Citrus Sinensis ID: 037414
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 577 | 2.2.26 [Sep-21-2011] | |||||||
| O81767 | 823 | Pentatricopeptide repeat- | yes | no | 0.904 | 0.634 | 0.397 | 1e-121 | |
| Q9LW32 | 659 | Pentatricopeptide repeat- | no | no | 0.892 | 0.781 | 0.406 | 1e-120 | |
| Q9LFL5 | 850 | Pentatricopeptide repeat- | no | no | 0.868 | 0.589 | 0.373 | 1e-117 | |
| Q9SUH6 | 792 | Pentatricopeptide repeat- | no | no | 0.861 | 0.627 | 0.398 | 1e-115 | |
| Q9LIQ7 | 633 | Pentatricopeptide repeat- | no | no | 0.899 | 0.819 | 0.377 | 1e-115 | |
| Q9SMZ2 | 990 | Pentatricopeptide repeat- | no | no | 0.861 | 0.502 | 0.378 | 1e-114 | |
| Q3E6Q1 | 809 | Pentatricopeptide repeat- | no | no | 0.935 | 0.667 | 0.385 | 1e-113 | |
| Q9LZ19 | 635 | Pentatricopeptide repeat- | no | no | 0.883 | 0.803 | 0.376 | 1e-113 | |
| Q9S7F4 | 825 | Putative pentatricopeptid | no | no | 0.864 | 0.604 | 0.383 | 1e-113 | |
| P0C899 | 686 | Putative pentatricopeptid | no | no | 0.876 | 0.737 | 0.408 | 1e-113 |
| >sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2 | Back alignment and function desciption |
|---|
Score = 436 bits (1121), Expect = e-121, Method: Compositional matrix adjust.
Identities = 231/581 (39%), Positives = 332/581 (57%), Gaps = 59/581 (10%)
Query: 56 RSVDPKFFISSLLSCRNIFQIRQ---VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAH 112
R++D +S L +C + +H+ + G + L V+NKL+ +YA L D
Sbjct: 243 RAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQ 302
Query: 113 ALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRK 172
+F+ M RD +SW+ ++ + + F+E +Q D TL +
Sbjct: 303 KVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLG 362
Query: 173 DIVMGRLIHDIVLKSGLDIDQFVCA-ALVDMYAKCKVIDDARQLFDQMPTRDLV------ 225
DI R + L+ G ++ A+V MYAK ++D AR +F+ +P D++
Sbjct: 363 DIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTII 422
Query: 226 ------------------------------TWTVMIGA-------------------NKF 236
TW ++ A N
Sbjct: 423 SGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGL 482
Query: 237 LLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPM 296
LDV + T++ DMY KCG ++ A +F ++ + N + W+ +IA +G+HG G+KA+ LF
Sbjct: 483 YLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKE 542
Query: 297 MLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAG 356
ML V P+ ITFV+LL ACSH+GLV+EG F M D+ + P +KHY CMVD+ GRAG
Sbjct: 543 MLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAG 602
Query: 357 RLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSN 416
+L+ ALK I+SMS++ D +WGALL ACR+H NVDL ++A++ L E +P++ G++VLLSN
Sbjct: 603 QLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSN 662
Query: 417 VYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVT 476
+YA+AG+W+ V +IR + + L+K PGW+ +EV+NK+ F G+ THP EE+YR L
Sbjct: 663 MYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTA 722
Query: 477 LSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRV 536
L KL++ GY+PD F L DV+++ K L SHSE+LAIAF LIATP T IRI KNLRV
Sbjct: 723 LQAKLKMIGYVPDHRFVLQDVEDDEKEHILMSHSERLAIAFALIATPAKTTIRIFKNLRV 782
Query: 537 CGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
CGDCHS K +S IT R IIVRD+NRFHHF+ G CSC DYW
Sbjct: 783 CGDCHSVTKFISKITEREIIVRDSNRFHHFKNGVCSCGDYW 823
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LW32|PP258_ARATH Pentatricopeptide repeat-containing protein At3g26782, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 433 bits (1114), Expect = e-120, Method: Compositional matrix adjust.
Identities = 236/581 (40%), Positives = 333/581 (57%), Gaps = 66/581 (11%)
Query: 63 FISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK 119
F ++ +C ++F I +Q H Q G +++ V++ L+ +Y+ L DA +F+ +
Sbjct: 79 FPCAIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIP 138
Query: 120 ERDSVSWSVMVGGFSKVADFINCFETFREFI------RCGMQLDSYTLPFVIRACRDRKD 173
+R+ VSW+ M+ G+ + ++ F++ + M LDS L VI AC
Sbjct: 139 KRNIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPA 198
Query: 174 IVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKC---------KVID-------------- 210
+ IH V+K G D V L+D YAK K+ D
Sbjct: 199 KGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIM 258
Query: 211 ----------DARQLFDQMPTRDLVTWTVMIGANKFLL---------------------- 238
+A ++F ++ +VT+ + + L
Sbjct: 259 SVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGL 318
Query: 239 --DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPM 296
DVI+GT++IDMY KCG +++AR+ FDRM+ KNV SW+AMIA YG HG KAL+LFP
Sbjct: 319 EDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPA 378
Query: 297 MLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAG 356
M+ S V PN ITFVS+L ACSH GL EG R F++M F V P ++HY CMVDLLGRAG
Sbjct: 379 MIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAG 438
Query: 357 RLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSN 416
L +A LI+ M ++ D +W +LL ACRIHKNV+LAE++ L E N G+Y+LLS+
Sbjct: 439 FLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLLSH 498
Query: 417 VYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVT 476
+YA+AGRW+DV ++R +M R L K PG++ +E+ ++H F +GD HPQ E+IY L
Sbjct: 499 IYADAGRWKDVERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAE 558
Query: 477 LSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRV 536
L+ KL AGY+ +T+ HDVDEE K L HSEKLAIAFG++ T G+ + ++KNLRV
Sbjct: 559 LNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRV 618
Query: 537 CGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
C DCH+ IK +S I R +VRDA RFHHF+ G CSC DYW
Sbjct: 619 CSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGGCSCGDYW 659
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 422 bits (1086), Expect = e-117, Method: Compositional matrix adjust.
Identities = 225/602 (37%), Positives = 329/602 (54%), Gaps = 101/602 (16%)
Query: 77 RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
+Q+H V + N+ V N L+ +YA + +A+ +F+ M +D VSW+ MV G+S++
Sbjct: 249 KQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQI 308
Query: 137 ADFINCFETF-----------------------------------REFIRCGMQLDSYTL 161
F + F R+ + G++ + TL
Sbjct: 309 GRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTL 368
Query: 162 PFVIRACRDRKDIVMGRLIHDIVLKSGLDI-------DQFVCAALVDMYAKCKVIDDARQ 214
V+ C ++ G+ IH +K +D+ + V L+DMYAKCK +D AR
Sbjct: 369 ISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARA 428
Query: 215 LFDQMPT--RDLVTWTVMIG-------ANKFL---------------------------- 237
+FD + RD+VTWTVMIG ANK L
Sbjct: 429 MFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACA 488
Query: 238 ----------------------LDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWS 275
+ + + +IDMYAKCGSI AR +FD M KN ++W+
Sbjct: 489 SLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWT 548
Query: 276 AMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDD 335
+++ YG HG G++AL +F M + +T + +LYACSH+G++++G+ F+ M
Sbjct: 549 SLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTV 608
Query: 336 FAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEM 395
F V P +HY C+VDLLGRAGRL+ AL+LIE M +E +W A L CRIH V+L E
Sbjct: 609 FGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEY 668
Query: 396 AAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIH 455
AA+ + E + G Y LLSN+YANAGRW+DV +IR LM + +KK PG +W+E
Sbjct: 669 AAEKITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEGIKGTT 728
Query: 456 QFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAI 515
F VGD THP ++EIY++L+ ++++ GY+P+T F LHDVD+E K L+ HSEKLA+
Sbjct: 729 TFFVGDKTHPHAKEIYQVLLDHMQRIKDIGYVPETGFALHDVDDEEKDDLLFEHSEKLAL 788
Query: 516 AFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRD 575
A+G++ TP+G IRI KNLRVCGDCH+ ++S I II+RD++RFHHF+ G+CSC+
Sbjct: 789 AYGILTTPQGAAIRITKNLRVCGDCHTAFTYMSRIIDHDIILRDSSRFHHFKNGSCSCKG 848
Query: 576 YW 577
YW
Sbjct: 849 YW 850
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 416 bits (1069), Expect = e-115, Method: Compositional matrix adjust.
Identities = 221/554 (39%), Positives = 310/554 (55%), Gaps = 57/554 (10%)
Query: 78 QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVA 137
Q+H+ G ++ V + +Y+ + ALF ++ D V+++ M+ G++
Sbjct: 242 QIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNG 301
Query: 138 DFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCA 197
+ F+E + G +L S TL ++ +++ IH LKS V
Sbjct: 302 ETELSLSLFKELMLSGARLRSSTLVSLVPVS---GHLMLIYAIHGYCLKSNFLSHASVST 358
Query: 198 ALVDMYAKCKVIDDARQLFDQMPTRDL--------------------------------- 224
AL +Y+K I+ AR+LFD+ P + L
Sbjct: 359 ALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSP 418
Query: 225 --VTWTVMIGA-------------------NKFLLDVILGTAVIDMYAKCGSIDSAREIF 263
VT T ++ A F + + TA+I MYAKCGSI AR +F
Sbjct: 419 NPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLF 478
Query: 264 DRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVE 323
D M +KN ++W+ MI+ YG HGQG++AL++F ML+S + P +TF+ +LYACSH GLV+
Sbjct: 479 DLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVK 538
Query: 324 EGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
EG +F+SM + P VKHY CMVD+LGRAG L AL+ IE+MS+E +W LLGA
Sbjct: 539 EGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGA 598
Query: 384 CRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIP 443
CRIHK+ +LA ++ L E P N G++VLLSN+++ + A +R +R+L K P
Sbjct: 599 CRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAP 658
Query: 444 GWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKV 503
G+T IE+ H F+ GD +HPQ +EIY L L K+ AGY P+T LHDV+EE +
Sbjct: 659 GYTLIEIGETPHVFTSGDQSHPQVKEIYEKLEKLEGKMREAGYQPETELALHDVEEEERE 718
Query: 504 GNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRF 563
+ HSE+LAIAFGLIAT GT IRI+KNLRVC DCH+ K +S IT RVI+VRDANRF
Sbjct: 719 LMVKVHSERLAIAFGLIATEPGTEIRIIKNLRVCLDCHTVTKLISKITERVIVVRDANRF 778
Query: 564 HHFEGGACSCRDYW 577
HHF+ G CSC DYW
Sbjct: 779 HHFKDGVCSCGDYW 792
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 416 bits (1069), Expect = e-115, Method: Compositional matrix adjust.
Identities = 218/577 (37%), Positives = 324/577 (56%), Gaps = 58/577 (10%)
Query: 58 VDPKFFISSLLSC---RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHAL 114
D +F+ + L C + + Q R VHA I+ ++++ N LL +YA +L +A +
Sbjct: 58 ADRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKV 117
Query: 115 FNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDI 174
F M +RD V+W+ ++ G+S+ + F + +R G + +TL VI+A +
Sbjct: 118 FEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRG 177
Query: 175 VMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI--- 231
G +H +K G D + V +AL+D+Y + ++DDA+ +FD + +R+ V+W +I
Sbjct: 178 CCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGH 237
Query: 232 ----GANKFL-----------------------------------------------LDV 240
G K L L
Sbjct: 238 ARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVA 297
Query: 241 ILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSS 300
G ++DMYAK GSI AR+IFDR+ +++V+SW++++ AY HG GK+A+ F M
Sbjct: 298 FAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRV 357
Query: 301 RVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDE 360
+ PN I+F+S+L ACSH+GL++EG + M D + P+ HY +VDLLGRAG L+
Sbjct: 358 GIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKD-GIVPEAWHYVTVVDLLGRAGDLNR 416
Query: 361 ALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYAN 420
AL+ IE M +E +W ALL ACR+HKN +L AA+ + E P +PG +V+L N+YA+
Sbjct: 417 ALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYAS 476
Query: 421 AGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEK 480
GRW D A++R M +KK P +W+E+EN IH F D HPQ EEI R + K
Sbjct: 477 GGRWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAK 536
Query: 481 LELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDC 540
++ GY+PDT+ + VD++ + NL HSEK+A+AF L+ TP G+ I I KN+RVCGDC
Sbjct: 537 IKELGYVPDTSHVIVHVDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVCGDC 596
Query: 541 HSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
H+ IK S + R IIVRD NRFHHF+ G CSC+DYW
Sbjct: 597 HTAIKLASKVVGREIIVRDTNRFHHFKDGNCSCKDYW 633
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein At4g33170 OS=Arabidopsis thaliana GN=PCMP-H53 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 412 bits (1059), Expect = e-114, Method: Compositional matrix adjust.
Identities = 211/558 (37%), Positives = 319/558 (57%), Gaps = 61/558 (10%)
Query: 77 RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKER---DSVSWSVMVGGF 133
+QVH + +++ V+ L+ Y+ ++ + +A LF ER D V+W+ M+ G+
Sbjct: 437 KQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILF----ERHNFDLVAWNAMMAGY 492
Query: 134 SKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQ 193
++ D + F + G + D +TL V + C I G+ +H +KSG D+D
Sbjct: 493 TQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDL 552
Query: 194 FVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG--------------------- 232
+V + ++DMY KC + A+ FD +P D V WT MI
Sbjct: 553 WVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLM 612
Query: 233 -----------------------------ANKFLL----DVILGTAVIDMYAKCGSIDSA 259
AN L D +GT+++DMYAKCGSID A
Sbjct: 613 GVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGSIDDA 672
Query: 260 REIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHT 319
+F R+ N+ +W+AM+ HG+GK+ L LF M S + P+++TF+ +L ACSH+
Sbjct: 673 YCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSACSHS 732
Query: 320 GLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGA 379
GLV E + SM D+ ++P+++HY+C+ D LGRAG + +A LIESMS+E ++
Sbjct: 733 GLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQAENLIESMSMEASASMYRT 792
Query: 380 LLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRL 439
LL ACR+ + + + A LLE +P + YVLLSN+YA A +W ++ R +M ++
Sbjct: 793 LLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKV 852
Query: 440 KKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDE 499
KK PG++WIEV+NKIH F V D ++ Q+E IYR + + ++ GY+P+T+F L DV+E
Sbjct: 853 KKDPGFSWIEVKNKIHIFVVDDRSNRQTELIYRKVKDMIRDIKQEGYVPETDFTLVDVEE 912
Query: 500 EVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRD 559
E K LY HSEKLA+AFGL++TP T IR++KNLRVCGDCH+ +K+++ + R I++RD
Sbjct: 913 EEKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYIAKVYNREIVLRD 972
Query: 560 ANRFHHFEGGACSCRDYW 577
ANRFH F+ G CSC DYW
Sbjct: 973 ANRFHRFKDGICSCGDYW 990
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290 OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 409 bits (1052), Expect = e-113, Method: Compositional matrix adjust.
Identities = 233/604 (38%), Positives = 346/604 (57%), Gaps = 64/604 (10%)
Query: 34 GHEQNPMNPRVPMQMGPD-CQFTRSVDPKFF-ISSLLSCRNIFQI----RQVHAQIVAGG 87
G+ QN M R+ ++M C+ ++ P F I S+L + ++ +++H + G
Sbjct: 210 GYSQNGM-ARMALEMVKSMCE--ENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSG 266
Query: 88 TLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFR 147
+ + ++ L+ +YA +L A LF+GM ER+ VSW+ M+ + + + F+
Sbjct: 267 FDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQ 326
Query: 148 EFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCK 207
+ + G++ ++ + AC D D+ GR IH + ++ GLD + V +L+ MY KCK
Sbjct: 327 KMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCK 386
Query: 208 VID-------------------------------DARQLFDQMPTR----DLVTWTVMIG 232
+D DA F QM +R D T+ +I
Sbjct: 387 EVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVIT 446
Query: 233 ANKFL-----------------LD--VILGTAVIDMYAKCGSIDSAREIFDRMRQKNVIS 273
A L LD V + TA++DMYAKCG+I AR IFD M +++V +
Sbjct: 447 AIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTT 506
Query: 274 WSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMW 333
W+AMI YG HG GK AL+LF M + PN +TF+S++ ACSH+GLVE GL+ F M
Sbjct: 507 WNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMK 566
Query: 334 DDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLA 393
+++++ + HY MVDLLGRAGRL+EA I M V+ ++GA+LGAC+IHKNV+ A
Sbjct: 567 ENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFA 626
Query: 394 EMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENK 453
E AA+ L E P + G++VLL+N+Y A W+ V ++R M R+ L+K PG + +E++N+
Sbjct: 627 EKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNE 686
Query: 454 IHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKL 513
+H F G + HP S++IY L L ++ AGY+PDTN L V+ +VK L +HSEKL
Sbjct: 687 VHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVPDTNLVL-GVENDVKEQLLSTHSEKL 745
Query: 514 AIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSC 573
AI+FGL+ T GT I + KNLRVC DCH+ K++S +T R I+VRD RFHHF+ GACSC
Sbjct: 746 AISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGREIVVRDMQRFHHFKNGACSC 805
Query: 574 RDYW 577
DYW
Sbjct: 806 GDYW 809
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LZ19|PP364_ARATH Pentatricopeptide repeat-containing protein At5g04780 OS=Arabidopsis thaliana GN=PCMP-H16 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 409 bits (1052), Expect = e-113, Method: Compositional matrix adjust.
Identities = 213/566 (37%), Positives = 321/566 (56%), Gaps = 56/566 (9%)
Query: 68 LSCRN--IFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVS 125
L RN + + + H +I+ ++ + N L+ Y+ + A +F+GM ER VS
Sbjct: 70 LCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERSLVS 129
Query: 126 WSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVL 185
W+ M+G +++ + F E G + +T+ V+ AC D + + +H + +
Sbjct: 130 WNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKLHCLSV 189
Query: 186 KSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA------------ 233
K+ +D++ +V AL+D+YAKC +I DA Q+F+ M + VTW+ M+
Sbjct: 190 KTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALL 249
Query: 234 ------------NKFLL------------------------------DVILGTAVIDMYA 251
N+F L +V + ++ +DMYA
Sbjct: 250 LYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYA 309
Query: 252 KCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVS 311
KCGS+ + IF +++KN+ W+ +I+ + H + K+ + LF M + PN +TF S
Sbjct: 310 KCGSLRESYIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSS 369
Query: 312 LLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVE 371
LL C HTGLVEEG R F M + + P+V HY+CMVD+LGRAG L EA +LI+S+ +
Sbjct: 370 LLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFD 429
Query: 372 KDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIR 431
+WG+LL +CR++KN++LAE+AA+ L E +P+N G++VLLSN+YA +W+++AK R
Sbjct: 430 PTASIWGSLLASCRVYKNLELAEVAAEKLFELEPENAGNHVLLSNIYAANKQWEEIAKSR 489
Query: 432 DLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTN 491
L+ +KK+ G +WI++++K+H FSVG+S HP+ EI L L K GY P
Sbjct: 490 KLLRDCDVKKVRGKSWIDIKDKVHTFSVGESGHPRIREICSTLDNLVIKFRKFGYKPSVE 549
Query: 492 FELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAIT 551
ELHDV+ K L HSEKLA+ FGL+ PE + +RIMKNLR+C DCH F+K S T
Sbjct: 550 HELHDVEIGKKEELLMQHSEKLALVFGLMCLPESSPVRIMKNLRICVDCHEFMKAASMAT 609
Query: 552 RRVIIVRDANRFHHFEGGACSCRDYW 577
RR IIVRD NRFHHF G CSC D+W
Sbjct: 610 RRFIIVRDVNRFHHFSDGHCSCGDFW 635
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9S7F4|PP206_ARATH Putative pentatricopeptide repeat-containing protein At2g01510 OS=Arabidopsis thaliana GN=PCMP-H36 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 409 bits (1052), Expect = e-113, Method: Compositional matrix adjust.
Identities = 214/558 (38%), Positives = 316/558 (56%), Gaps = 59/558 (10%)
Query: 77 RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
+Q+HA V G + V N++L Y+ H + + LF+ M E D VS++V++ +S+
Sbjct: 270 QQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQA 329
Query: 137 ADFINCFETFREFIRCGMQLDSYTLPF--VIRACRDRKDIVMGRLIHDIVLKSGLDIDQF 194
+ FRE ++C M D PF ++ + + MGR +H L + D
Sbjct: 330 DQYEASLHFFRE-MQC-MGFDRRNFPFATMLSIAANLSSLQMGRQLHCQALLATADSILH 387
Query: 195 VCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTV--------------------MIGAN 234
V +LVDMYAKC++ ++A +F +P R V+WT M G+N
Sbjct: 388 VGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSN 447
Query: 235 ----------------------------KFLL------DVILGTAVIDMYAKCGSIDSAR 260
F++ +V G+ ++DMYAKCGSI A
Sbjct: 448 LRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAV 507
Query: 261 EIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTG 320
++F+ M +N +SW+A+I+A+ +G G+ A+ F M+ S + P+ ++ + +L ACSH G
Sbjct: 508 QVFEEMPDRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSHCG 567
Query: 321 LVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGAL 380
VE+G F +M + + P KHY CM+DLLGR GR EA KL++ M E DE +W ++
Sbjct: 568 FVEQGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSV 627
Query: 381 LGACRIHKNVDLAEMAAKSLLERQP-QNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRL 439
L ACRIHKN LAE AA+ L + ++ YV +SN+YA AG W+ V ++ M R +
Sbjct: 628 LNACRIHKNQSLAERAAEKLFSMEKLRDAAAYVSMSNIYAAAGEWEKVRDVKKAMRERGI 687
Query: 440 KKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDE 499
KK+P ++W+EV +KIH FS D THP +EI R + L+ ++E GY PDT+ + DVDE
Sbjct: 688 KKVPAYSWVEVNHKIHVFSSNDQTHPNGDEIVRKINELTAEIEREGYKPDTSSVVQDVDE 747
Query: 500 EVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRD 559
++K+ +L HSE+LA+AF LI+TPEG I +MKNLR C DCH+ IK +S I +R I VRD
Sbjct: 748 QMKIESLKYHSERLAVAFALISTPEGCPIVVMKNLRACRDCHAAIKLISKIVKREITVRD 807
Query: 560 ANRFHHFEGGACSCRDYW 577
+RFHHF G CSC DYW
Sbjct: 808 TSRFHHFSEGVCSCGDYW 825
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing protein At3g49142 OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 409 bits (1051), Expect = e-113, Method: Compositional matrix adjust.
Identities = 220/539 (40%), Positives = 319/539 (59%), Gaps = 33/539 (6%)
Query: 69 SCRNIFQI-RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWS 127
SC I R++H G + L V N L+ +Y L++A + + M RD VSW+
Sbjct: 151 SCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWN 210
Query: 128 VMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRK-DIVMGRLIHDIVLK 186
+V G+++ F + E RE + D+ T+ ++ A + + VM + D+ K
Sbjct: 211 SLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVM--YVKDMFFK 268
Query: 187 SGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR----DLVTWTVMIGA--------- 233
G ++ +Y K + +A +L+ +M D V+ T ++ A
Sbjct: 269 MGKK-SLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSL 327
Query: 234 ----------NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGY 283
K + +++L A+IDMYAKCG ++ AR++F+ M+ ++V+SW+AMI+AYG+
Sbjct: 328 GKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGF 387
Query: 284 HGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVK 343
G+G A+ LF + S ++P+ I FV+ L ACSH GL+EEG F M D + + P ++
Sbjct: 388 SGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLE 447
Query: 344 HYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLER 403
H CMVDLLGRAG++ EA + I+ MS+E +E +WGALLGACR+H + D+ +AA L +
Sbjct: 448 HLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQL 507
Query: 404 QPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDST 463
P+ G+YVLLSN+YA AGRW++V IR++M + LKK PG + +EV IH F VGD +
Sbjct: 508 APEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRS 567
Query: 464 HPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATP 523
HPQS+EIYR L L +K++ GY+PD+ LHDV+EE K +L HSEKLAI F L+ T
Sbjct: 568 HPQSDEIYRELDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHSEKLAIVFALMNTK 627
Query: 524 E-----GTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
E IRI KNLR+CGDCH K +S IT R II+RD NRFH F G CSC DYW
Sbjct: 628 EEEEDSNNTIRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVFRFGVCSCGDYW 686
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 577 | ||||||
| 356498743 | 573 | PREDICTED: pentatricopeptide repeat-cont | 0.890 | 0.897 | 0.661 | 0.0 | |
| 147841045 | 1309 | hypothetical protein VITISV_014227 [Viti | 0.876 | 0.386 | 0.680 | 0.0 | |
| 224140095 | 574 | predicted protein [Populus trichocarpa] | 0.901 | 0.905 | 0.646 | 0.0 | |
| 449462994 | 624 | PREDICTED: pentatricopeptide repeat-cont | 0.987 | 0.913 | 0.591 | 0.0 | |
| 297740136 | 861 | unnamed protein product [Vitis vinifera] | 0.863 | 0.578 | 0.685 | 0.0 | |
| 225440839 | 705 | PREDICTED: pentatricopeptide repeat-cont | 0.844 | 0.690 | 0.643 | 0.0 | |
| 255578965 | 1530 | Bipolar kinesin KRP-130, putative [Ricin | 0.771 | 0.290 | 0.580 | 1e-168 | |
| 297743497 | 832 | unnamed protein product [Vitis vinifera] | 0.896 | 0.621 | 0.425 | 1e-130 | |
| 328774757 | 1161 | pentatricopeptide repeat protein 77 [Fun | 0.899 | 0.447 | 0.416 | 1e-128 | |
| 359482718 | 1088 | PREDICTED: putative pentatricopeptide re | 0.922 | 0.488 | 0.383 | 1e-127 |
| >gi|356498743|ref|XP_003518209.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 788 bits (2035), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/567 (66%), Positives = 443/567 (78%), Gaps = 53/567 (9%)
Query: 64 ISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDS 123
I LL CRN+F IRQVHA +VA GTL +L++ANKLLY YA HKA+ DA++LF+G+ RDS
Sbjct: 7 IDLLLRCRNVFHIRQVHAHVVANGTLQDLVIANKLLYTYAQHKAIDDAYSLFDGLTMRDS 66
Query: 124 VSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDI 183
+WSVMVGGF+K D C+ TFRE +RCG+ D+YTLPFVIR CRDR D+ +GR+IHD+
Sbjct: 67 KTWSVMVGGFAKAGDHAGCYATFRELLRCGVTPDNYTLPFVIRTCRDRTDLQIGRVIHDV 126
Query: 184 VLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA---------- 233
VLK GL D FVCA+LVDMYAKC V++DA++LF++M ++DLVTWTVMIGA
Sbjct: 127 VLKHGLLSDHFVCASLVDMYAKCIVVEDAQRLFERMLSKDLVTWTVMIGAYADCNAYESL 186
Query: 234 -------------------------------------------NKFLLDVILGTAVIDMY 250
N F LDVILGTA+IDMY
Sbjct: 187 VLFDRMREEGVVPDKVAMVTVVNACAKLGAMHRARFANDYIVRNGFSLDVILGTAMIDMY 246
Query: 251 AKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFV 310
AKCGS++SARE+FDRM++KNVISWSAMIAAYGYHG+GK A+DLF MMLS +LPNR+TFV
Sbjct: 247 AKCGSVESAREVFDRMKEKNVISWSAMIAAYGYHGRGKDAIDLFHMMLSCAILPNRVTFV 306
Query: 311 SLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSV 370
SLLYACSH GL+EEGLR F+SMW++ AVRPDVKHYTCMVDLLGRAGRLDEAL+LIE+M+V
Sbjct: 307 SLLYACSHAGLIEEGLRFFNSMWEEHAVRPDVKHYTCMVDLLGRAGRLDEALRLIEAMTV 366
Query: 371 EKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKI 430
EKDE LW ALLGACRIH ++LAE AA SLLE QPQNPGHYVLLSN+YA AG+W+ VAK
Sbjct: 367 EKDERLWSALLGACRIHSKMELAEKAANSLLELQPQNPGHYVLLSNIYAKAGKWEKVAKF 426
Query: 431 RDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDT 490
RD+MT+R+LKKIPGWTWIEV+NK +QFSVGD +HPQS+EIY ML++L +KLE+AGY+PDT
Sbjct: 427 RDMMTQRKLKKIPGWTWIEVDNKTYQFSVGDRSHPQSKEIYEMLMSLIKKLEMAGYVPDT 486
Query: 491 NFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAI 550
+F L DV+EEVK LY+HSEKLAIAFGLIA PEG IRI KNLRVCGDCH+F K VS+I
Sbjct: 487 DFVLQDVEEEVKQEMLYTHSEKLAIAFGLIAIPEGEPIRISKNLRVCGDCHTFSKMVSSI 546
Query: 551 TRRVIIVRDANRFHHFEGGACSCRDYW 577
RR IIVRDANRFHHF G CSC DYW
Sbjct: 547 MRRSIIVRDANRFHHFNDGTCSCGDYW 573
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147841045|emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 776 bits (2004), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/560 (68%), Positives = 434/560 (77%), Gaps = 54/560 (9%)
Query: 72 NIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVG 131
N+ Q+RQVH Q G L NLIVANKL+ Y+ ++AL DA+ LF+GM RDSVSWSVMVG
Sbjct: 750 NLTQVRQVHXQASVHGMLQNLIVANKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSVMVG 809
Query: 132 GFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDI 191
GF+KV D++NCF TFRE IRCG + D+YTLPFVIRACRD K++ MGRLIH IV K GLD+
Sbjct: 810 GFAKVGDYMNCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDL 869
Query: 192 DQFVCAALVDMYAKCKVIDDARQLF----------------------------------- 216
D FVCAALVDMY KC+ I+DAR LF
Sbjct: 870 DHFVCAALVDMYGKCREIEDARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLFDKMR 929
Query: 217 ------DQMPTRDLVTWTVMIGA-------------NKFLLDVILGTAVIDMYAKCGSID 257
D++ +V +GA KF LDVILGTA+IDM+AKCG ++
Sbjct: 930 EEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVE 989
Query: 258 SAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACS 317
SAREIFDRM +KNVISWSAMIAAYGYHGQG+KALDLFPMML S +LPN+IT VSLLYACS
Sbjct: 990 SAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACS 1049
Query: 318 HTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLW 377
H GLVEEGLR FS MW+D++VR DVKHYTC+VDLLGRAGRLDEALKLI SM+ EKDEGLW
Sbjct: 1050 HAGLVEEGLRFFSXMWEDYSVRXDVKHYTCVVDLLGRAGRLDEALKLIXSMTXEKDEGLW 1109
Query: 378 GALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRR 437
GA LGACR HK+V LAE AA SLLE QPQNPGHY+LLSN+YANAGRW+DVAKIRDLM++R
Sbjct: 1110 GAFLGACRTHKDVXLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKIRDLMSQR 1169
Query: 438 RLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDV 497
RLKKIPGWTWIEV+NK HQFSVGD+THP+S+EIY ML +L KLEL GY+PDTNF LHDV
Sbjct: 1170 RLKKIPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLGNKLELVGYVPDTNFVLHDV 1229
Query: 498 DEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIV 557
DEE+K+G LY+HSEKLAIAFGLIATPE T IRI+KNLRVCGDCH+F K VSAIT RVIIV
Sbjct: 1230 DEELKIGILYTHSEKLAIAFGLIATPEHTPIRIIKNLRVCGDCHTFCKLVSAITGRVIIV 1289
Query: 558 RDANRFHHFEGGACSCRDYW 577
RDANRFHHF+ GACSC DYW
Sbjct: 1290 RDANRFHHFKEGACSCGDYW 1309
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224140095|ref|XP_002323422.1| predicted protein [Populus trichocarpa] gi|222868052|gb|EEF05183.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 763 bits (1970), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/574 (64%), Positives = 440/574 (76%), Gaps = 54/574 (9%)
Query: 58 VDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNG 117
+DP FFIS+L CRNIFQI+QVHAQ+ G + +LIVANKLLY+ A HK L AH LFN
Sbjct: 1 MDPDFFISTLFKCRNIFQIKQVHAQVTTTGIIHDLIVANKLLYMCAKHKDLVTAHLLFNK 60
Query: 118 MKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMG 177
M+ERD VSWSVM+GGF K D+ CF+TFRE IR G + D+++LPFVI+ACRD ++MG
Sbjct: 61 MEERDPVSWSVMIGGFVKNGDYERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGLIMG 120
Query: 178 RLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVT----------- 226
RLIH VLK+GL +D FVC+ LVDMYAKC +ID+A+QLFD+MP +DLVT
Sbjct: 121 RLIHSTVLKNGLHLDNFVCSTLVDMYAKCGMIDNAKQLFDRMPKKDLVTRTVMIAGYAEC 180
Query: 227 ------WTVM-------------------------------------IGANKFLLDVILG 243
W + + A ++ LDV LG
Sbjct: 181 GKPNESWVLFDQMRRDGFVPDKVAMVTIVNACAKLGAMNKARLVHDYVCARRYSLDVELG 240
Query: 244 TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVL 303
TA+IDMYAKCGSIDS+REIFDRM QKNVISWSAMI AYGYHGQG++AL+LF MML+S ++
Sbjct: 241 TAMIDMYAKCGSIDSSREIFDRMEQKNVISWSAMIGAYGYHGQGREALELFHMMLNSGII 300
Query: 304 PNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALK 363
PNRITF+SLLYACSH GLV++GL+LFS M + VRPDVKHYTCMVDLLGRAGRLD+AL+
Sbjct: 301 PNRITFISLLYACSHAGLVDDGLQLFSLMSVSYGVRPDVKHYTCMVDLLGRAGRLDQALR 360
Query: 364 LIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGR 423
LIE+M VEKDEG+W A LGACRIH+ VDLAE AAK LL Q QNPGHY+LLSN+YANAGR
Sbjct: 361 LIENMEVEKDEGIWCAFLGACRIHRQVDLAEKAAKLLLSLQTQNPGHYILLSNIYANAGR 420
Query: 424 WQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLEL 483
W+DVAKIR+LM +RRLKKIPG+TWIEV+N I++F GD++H +S EIY ML +LS+KLE
Sbjct: 421 WKDVAKIRNLMAKRRLKKIPGYTWIEVDNIIYRFGAGDNSHLRSNEIYEMLKSLSQKLES 480
Query: 484 AGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSF 543
AGY+PDTN LHDVDEEVK+G L++HSEKLAIAFGLIATP+GT IRI KNLRVCGDCHSF
Sbjct: 481 AGYVPDTNSVLHDVDEEVKLGILHAHSEKLAIAFGLIATPDGTPIRITKNLRVCGDCHSF 540
Query: 544 IKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
K VSAIT+R IIVRDANRFHHF+ G CSC DYW
Sbjct: 541 CKLVSAITQRDIIVRDANRFHHFKEGICSCGDYW 574
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449462994|ref|XP_004149219.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290-like [Cucumis sativus] gi|449500964|ref|XP_004161240.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 735 bits (1898), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/631 (59%), Positives = 439/631 (69%), Gaps = 61/631 (9%)
Query: 1 MSKLKKHGFLVSISAKLRFFSSSTTAAIALEPHGHEQNPMNPRVPMQMGPDCQFTRSVDP 60
M K K H ++ KLRF S+S + + + +E P + +C D
Sbjct: 1 MLKSKCHHIFINY-GKLRFSSASLSWQFDVNCNSNEPTPCSQE------SECSHVLHYDT 53
Query: 61 KFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKE 120
K F SSLLSCRN+FQ+RQVHAQI G NL VANKLLY+Y AL DA LF+GM +
Sbjct: 54 KRFRSSLLSCRNLFQVRQVHAQIATNGAFRNLAVANKLLYMYVERGALEDAQELFDGMSK 113
Query: 121 RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLI 180
R SWSV+VGG++KV +F +CF FRE +R G LD Y+ P VIRACRD KD+ GRLI
Sbjct: 114 RHPYSWSVIVGGYAKVGNFFSCFWMFRELLRSGAPLDDYSAPVVIRACRDLKDLKCGRLI 173
Query: 181 HDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQM--------------------P 220
H I LK GLD FVCA LVDMYA+CKV++DA Q+F +M P
Sbjct: 174 HCITLKCGLDYGHFVCATLVDMYARCKVVEDAHQIFVKMWKRDLATWTVMIGALAESGVP 233
Query: 221 TRDLVTWTVM----------------------------------IGANKFLLDVILGTAV 246
LV + M I + LDVILGTA+
Sbjct: 234 VESLVFFDRMRNQGIVPDKVALVTVVYACAKLGAMNKAKAIHAYINGTGYSLDVILGTAM 293
Query: 247 IDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNR 306
IDMYAKCGS++SAR IFDRM+ +NVI+WSAMIAAYGYHGQG+KAL+LFPMML S +LPNR
Sbjct: 294 IDMYAKCGSVESARWIFDRMQVRNVITWSAMIAAYGYHGQGEKALELFPMMLRSGILPNR 353
Query: 307 ITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIE 366
ITFVSLLYACSH GL+EEG R FSSMWD++ V PDVKHYTCMVDLLGRAGRLDEAL++IE
Sbjct: 354 ITFVSLLYACSHAGLIEEGQRFFSSMWDEYGVTPDVKHYTCMVDLLGRAGRLDEALEMIE 413
Query: 367 SMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQD 426
M VEKDE LWGALLGACRIH+++DLAE A+SLL+ Q Q PGHYVLLSN+YANAG+W+D
Sbjct: 414 GMPVEKDEVLWGALLGACRIHRHLDLAERVARSLLKLQSQKPGHYVLLSNIYANAGKWED 473
Query: 427 VAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGY 486
+AK RDLMT+ L+KIPG TWIEV K++QF VGD THP+S EIY+ML L EKLE+AGY
Sbjct: 474 MAKTRDLMTKGGLRKIPGRTWIEVGEKLYQFGVGDKTHPRSNEIYKMLKRLGEKLEVAGY 533
Query: 487 IPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKH 546
PDTN L+DVDEEVK G LYSHSEKLAIAFGL+ P+G IRI KNLRVCGDCH+F K
Sbjct: 534 HPDTNDVLYDVDEEVKQGLLYSHSEKLAIAFGLLVLPQGHPIRITKNLRVCGDCHTFCKF 593
Query: 547 VSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
VS I ++ IIVRDA RFHHF+ G CSCRDYW
Sbjct: 594 VSLIEQKTIIVRDAKRFHHFKEGVCSCRDYW 624
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297740136|emb|CBI30318.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 727 bits (1876), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/521 (68%), Positives = 418/521 (80%), Gaps = 23/521 (4%)
Query: 61 KFFISSLL----SCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFN 116
K ++SLL +CRN+ Q+RQVHAQ G L NLIVANKL++ Y+ ++AL DA+ LF+
Sbjct: 360 KITLASLLYACINCRNLTQVRQVHAQASVHGMLQNLIVANKLVHFYSYYRALDDAYGLFD 419
Query: 117 GMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVM 176
GM RDSVSWSVMVGGF+KV D++NCF TFRE IRCG + D+YTLPF C + + +
Sbjct: 420 GMCVRDSVSWSVMVGGFAKVGDYMNCFGTFRELIRCGARPDNYTLPF----CGNANESL- 474
Query: 177 GRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKF 236
++ D + + G+ D+ +V AK + AR + D + + KF
Sbjct: 475 --VLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRK------------KF 520
Query: 237 LLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPM 296
LDVILGTA+IDM+AKCG ++SAREIFDRM +KNVISWSAMIAAYGYHGQG+KALDLFPM
Sbjct: 521 QLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPM 580
Query: 297 MLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAG 356
ML S +LPN+IT VSLLYACSH GLVEEGLR FS MW+D++VR DVKHYTC+VDLLGRAG
Sbjct: 581 MLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLLGRAG 640
Query: 357 RLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSN 416
RLDEALKLIESM+VEKDEGLWGA LGACR HK+V LAE AA SLLE QPQNPGHY+LLSN
Sbjct: 641 RLDEALKLIESMTVEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQPQNPGHYILLSN 700
Query: 417 VYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVT 476
+YANAGRW+DVAK RDLM++RRLKKIPGWTWIEV+NK HQFSVGD+THP+S+EIY ML +
Sbjct: 701 IYANAGRWEDVAKTRDLMSQRRLKKIPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKS 760
Query: 477 LSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRV 536
L KLEL GY+PDTNF LHDVDEE+K+G LYSHSEKLAIAFGLIATPE T IRI+KNLRV
Sbjct: 761 LGNKLELVGYVPDTNFVLHDVDEELKIGILYSHSEKLAIAFGLIATPEHTPIRIIKNLRV 820
Query: 537 CGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
CGDCH+F K VSAIT RVIIVRDANRFHHF+ GACSC DYW
Sbjct: 821 CGDCHTFCKLVSAITGRVIIVRDANRFHHFKEGACSCGDYW 861
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 704 bits (1818), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/541 (64%), Positives = 404/541 (74%), Gaps = 54/541 (9%)
Query: 91 NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
++I+ ++ +YA + A +F+ M+E++ +SWS M+ + + FR +
Sbjct: 165 DVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMML 224
Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID 210
GM D TL ++ AC D K++ MGRLIH IV K GLD+D FVCAALVDMY KC+ I+
Sbjct: 225 SSGMLPDKITLASLLYACSDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIE 284
Query: 211 DARQLFDQMPTRDLVTWTVM---------------------------------------- 230
DAR LFD+MP RDLVTWTVM
Sbjct: 285 DARFLFDKMPERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACA 344
Query: 231 -IGA-------------NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSA 276
+GA KF LDVILGTA+IDM+AKCG ++SAREIFDRM +KNVISWSA
Sbjct: 345 KLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSA 404
Query: 277 MIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDF 336
MIAAYGYHGQG+KALDLFPMML S +LPN+IT VSLLYACSH GLVEEGLR FS MW+D+
Sbjct: 405 MIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDY 464
Query: 337 AVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMA 396
+VR DVKHYTC+VDLLGRAGRLDEALKLIESM+VEKDEGLWGA LGACR HK+V LAE A
Sbjct: 465 SVRADVKHYTCVVDLLGRAGRLDEALKLIESMTVEKDEGLWGAFLGACRTHKDVVLAEKA 524
Query: 397 AKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQ 456
A SLLE QPQNPGHY+LLSN+YANAGRW+DVAK RDLM++RRLKKIPGWTWIEV+NK HQ
Sbjct: 525 ATSLLELQPQNPGHYILLSNIYANAGRWEDVAKTRDLMSQRRLKKIPGWTWIEVDNKSHQ 584
Query: 457 FSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIA 516
FSVGD+THP+S+EIY ML +L KLEL GY+PDTNF LHDVDEE+K+G LYSHSEKLAIA
Sbjct: 585 FSVGDTTHPRSKEIYEMLKSLGNKLELVGYVPDTNFVLHDVDEELKIGILYSHSEKLAIA 644
Query: 517 FGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDY 576
FGLIATPE T IRI+KNLRVCGDCH+F K VSAIT RVIIVRDANRFHHF+ GACSC DY
Sbjct: 645 FGLIATPEHTPIRIIKNLRVCGDCHTFCKLVSAITGRVIIVRDANRFHHFKEGACSCGDY 704
Query: 577 W 577
W
Sbjct: 705 W 705
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255578965|ref|XP_002530335.1| Bipolar kinesin KRP-130, putative [Ricinus communis] gi|223530139|gb|EEF32051.1| Bipolar kinesin KRP-130, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 597 bits (1539), Expect = e-168, Method: Compositional matrix adjust.
Identities = 297/512 (58%), Positives = 365/512 (71%), Gaps = 67/512 (13%)
Query: 6 KHGFLVSIS----AKLRFFSSSTTAAIA---LEPHGHEQNPMNPRVPMQM---GPDCQFT 55
KHG + + LRF S+S AA++ +P H++ ++P V + PD F+
Sbjct: 1020 KHGIQTTRNILNHVNLRFLSTSMAAALSDTISQPQFHQEATIDPPVTQILKISNPD--FS 1077
Query: 56 RSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTL-TNLIVANKLLYIYALHKALTDAHAL 114
+DP IS+LL+C+NI QI+Q+HA I L NL VANKLLY+Y HK LTDA+AL
Sbjct: 1078 FFMDPNCLISTLLNCKNICQIKQLHALITTNSVLYNNLTVANKLLYVYVHHKCLTDAYAL 1137
Query: 115 FNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDI 174
F+ M +++ VSWS+M+GGF KV +F+ C++TF+E IR G+Q D+YTLPFVI+ACRD +
Sbjct: 1138 FDEMPQKNPVSWSIMIGGFVKVGEFMQCYKTFKELIRNGVQPDNYTLPFVIKACRDTVAL 1197
Query: 175 VMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDL---------- 224
MGRLIH +VLK GL +D FVCAALVDMYAKCKVI+DA+ LFD MP++DL
Sbjct: 1198 DMGRLIHCVVLKYGLHLDHFVCAALVDMYAKCKVIEDAKLLFDVMPSKDLVTWTVMIGGY 1257
Query: 225 -------------------------------VTWTVMIGA-------------NKFLLDV 240
V +GA N+F LDV
Sbjct: 1258 AECGNAKESLVLFDHLREEGFVPDKIAMVSIVNACAKLGAMNKARFVHEYVNRNRFSLDV 1317
Query: 241 ILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSS 300
ILGTA+IDMYAKCG +DSAREIFD M KNVISWSAMIAAYGYHGQGKKAL+LFPMMLSS
Sbjct: 1318 ILGTAMIDMYAKCGDVDSAREIFDNMHHKNVISWSAMIAAYGYHGQGKKALELFPMMLSS 1377
Query: 301 RVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDE 360
+LPN ITFVSLLYACSH GLVE+GL L S MW+ F VRPD+KH+TCMVDLLGRAG+L E
Sbjct: 1378 GILPNNITFVSLLYACSHAGLVEDGLTLLSLMWESFGVRPDIKHHTCMVDLLGRAGQLTE 1437
Query: 361 ALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYAN 420
A + IE+M+VEKDEGLW +LLGACRIHK +DLAE AAKSLLE QPQNPG+Y+LLSN+YAN
Sbjct: 1438 AFRFIENMTVEKDEGLWSSLLGACRIHKRIDLAEKAAKSLLELQPQNPGNYILLSNIYAN 1497
Query: 421 AGRWQDVAKIRDLMTRRRLKKIPGWTWIEVEN 452
AG+W+DVAKIRDLMT+R+LKKIPG+TWIE+++
Sbjct: 1498 AGQWKDVAKIRDLMTKRKLKKIPGYTWIELKS 1529
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297743497|emb|CBI36364.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 471 bits (1213), Expect = e-130, Method: Compositional matrix adjust.
Identities = 236/555 (42%), Positives = 348/555 (62%), Gaps = 38/555 (6%)
Query: 61 KFFISSLLSC----RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFN 116
+F ++LL+ RN Q RQ+HA ++ N+IV +L+++Y+ L A +FN
Sbjct: 278 QFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFN 337
Query: 117 GMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVM 176
M ER++ SW+ M+ G+ + + F++ G++ D ++L ++ +C D
Sbjct: 338 RMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQK 397
Query: 177 GRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVT--WTVMIG-- 232
GR +H+ ++++ ++ + + LVDMYAKC +D A +++DQ +D T W ++
Sbjct: 398 GRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDRNTALWNSILAGY 457
Query: 233 ANKFL-----------------LDV----------ILGTAVIDMYAKCGSIDSAREIFDR 265
ANK L DV +L TA++DMY+KCG+I AR +FD
Sbjct: 458 ANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLLVLETALVDMYSKCGAITKARTVFDN 517
Query: 266 MRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEG 325
M KN++SW+AMI+ Y HG K+AL L+ M + PN +TF+++L ACSHTGLVEEG
Sbjct: 518 MNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEG 577
Query: 326 LRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACR 385
LR+F+SM +D+ + +HYTCMVDLLGRAGRL++A + +E M +E + WGALLGACR
Sbjct: 578 LRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTWGALLGACR 637
Query: 386 IHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGW 445
+HK++D+ +AA+ L E PQNPG YV++SN+YA AGRW++V IR +M + +KK PG
Sbjct: 638 VHKDMDMGRLAAQRLFELDPQNPGPYVIMSNIYAAAGRWKEVEDIRQMMKMKGVKKDPGV 697
Query: 446 TWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELH---DVDEEVK 502
+WIE+ ++I F G THP++EEIY L L+ + + GYIPDT+F L D+ EE +
Sbjct: 698 SWIEINSEIQIFHAGSKTHPKTEEIYNNLRHLTLQSKGLGYIPDTSFILQNVKDIKEEEE 757
Query: 503 VGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANR 562
L HSE+LA++ GLI+ P+ + IR+ KNLR+CGDCH+ K +S IT R II RD NR
Sbjct: 758 EEYLLQHSERLALSLGLISLPKKSTIRVFKNLRICGDCHTATKFISKITGRRIIARDTNR 817
Query: 563 FHHFEGGACSCRDYW 577
FHHFE G CSC DYW
Sbjct: 818 FHHFENGKCSCGDYW 832
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica] | Back alignment and taxonomy information |
|---|
Score = 466 bits (1200), Expect = e-128, Method: Compositional matrix adjust.
Identities = 240/576 (41%), Positives = 335/576 (58%), Gaps = 57/576 (9%)
Query: 59 DPKFFISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALF 115
D F S L+ C+N + RQ+H I+ G ++ + N L+ +Y +L DA+ +F
Sbjct: 586 DKITFASVLVGCKNPEALELGRQIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVF 645
Query: 116 NGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIV 175
+ ++ R+ +SW+ M+GGF+ + FE F + G + T +++AC +
Sbjct: 646 HSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQNDGFKPVKSTFSSILKACMSSACLD 705
Query: 176 MGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA-- 233
G+ + +L SG ++D V AL+ Y+K + DAR++FD+MP RD+++W MI
Sbjct: 706 EGKKVIAHILNSGYELDTGVGNALISAYSKSGSMTDARKVFDKMPNRDIMSWNKMIAGYA 765
Query: 234 ----------------------NKFLL------------------------------DVI 241
NKF DV
Sbjct: 766 QNGLGGTALQFAYQMQEQGVVLNKFSFVSILNACSSFSALEEGKRVHAEIVKRKMQGDVR 825
Query: 242 LGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR 301
+G A+I MYAKCGS++ A+E+FD +KNV++W+AMI AY HG KALD F M
Sbjct: 826 VGAALISMYAKCGSLEEAQEVFDNFTEKNVVTWNAMINAYAQHGLASKALDFFNCMDKEG 885
Query: 302 VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEA 361
+ P+ TF S+L AC+H+GLV EG R+FSS+ + P ++HY C+V LLGRAGR EA
Sbjct: 886 IKPDGSTFTSILSACNHSGLVMEGNRIFSSLESQHGLSPTIEHYGCLVGLLGRAGRFQEA 945
Query: 362 LKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANA 421
LI M D +W LLGACRIH NV LAE AA + L+ +NP YVLLSNVYA A
Sbjct: 946 ETLINQMPFPPDAAVWETLLGACRIHGNVALAEHAANNALKLNARNPAVYVLLSNVYAAA 1005
Query: 422 GRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKL 481
GRW DVAKIR +M R ++K PG +WIEV+N IH+F D +HP++ EIY L LS ++
Sbjct: 1006 GRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAADRSHPETAEIYEELKRLSLEM 1065
Query: 482 ELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCH 541
E AGY PDT + LH++D+E + +L +HSE+LAIA+GL+ TP GT IRI KNLR+CGDCH
Sbjct: 1066 ERAGYSPDTQYVLHNLDKEHQETSLCTHSERLAIAYGLLKTPPGTPIRIFKNLRICGDCH 1125
Query: 542 SFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
+ K +S + R II RD+NRFH F+ G CSC D+W
Sbjct: 1126 TASKFISKLVGREIIARDSNRFHTFKNGKCSCEDFW 1161
|
Source: Funaria hygrometrica Species: Funaria hygrometrica Genus: Funaria Family: Funariaceae Order: Funariales Class: Bryopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein At5g09950-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 463 bits (1191), Expect = e-127, Method: Compositional matrix adjust.
Identities = 240/626 (38%), Positives = 354/626 (56%), Gaps = 94/626 (15%)
Query: 46 MQMGPDCQFTRSVDP-KFFISSLLSC----RNIFQIRQVHAQIVAGGTLTNLIVANKLLY 100
+++ D Q + P +F ++LL+ RN Q RQ+HA ++ N+IV +L++
Sbjct: 463 LELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVH 522
Query: 101 IYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYT 160
+Y+ L A +FN M ER++ SW+ M+ G+ + + F++ G++ D ++
Sbjct: 523 MYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFS 582
Query: 161 LPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID---------- 210
L ++ +C D GR +H+ ++++ ++ + + LVDMYAKC +D
Sbjct: 583 LSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTI 642
Query: 211 ---------------------DARQLFDQMPTRDLVTWTVMIGA-----------NKFL- 237
DA+ LFDQM R+ W ++ N FL
Sbjct: 643 KKDVILNNVMVSAFVNSGRANDAKNLFDQMEQRNTALWNSILAGYANKGLKKESFNHFLE 702
Query: 238 -------------------------------------------LDVILGTAVIDMYAKCG 254
V+L TA++DMY+KCG
Sbjct: 703 MLESDIEYDVLTMVTIVNLCSSLPALEHGDQLHSLIIKKGFVNCSVVLETALVDMYSKCG 762
Query: 255 SIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLY 314
+I AR +FD M KN++SW+AMI+ Y HG K+AL L+ M + PN +TF+++L
Sbjct: 763 AITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILS 822
Query: 315 ACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDE 374
ACSHTGLVEEGLR+F+SM +D+ + +HYTCMVDLLGRAGRL++A + +E M +E +
Sbjct: 823 ACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPEV 882
Query: 375 GLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLM 434
WGALLGACR+HK++D+ +AA+ L E PQNPG YV++SN+YA AGRW++V IR +M
Sbjct: 883 STWGALLGACRVHKDMDMGRLAAQRLFELDPQNPGPYVIMSNIYAAAGRWKEVEDIRQMM 942
Query: 435 TRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFEL 494
+ +KK PG +WIE+ ++I F G THP++EEIY L L+ + + GYIPDT+F L
Sbjct: 943 KMKGVKKDPGVSWIEINSEIQIFHAGSKTHPKTEEIYNNLRHLTLQSKGLGYIPDTSFIL 1002
Query: 495 H---DVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAIT 551
D+ EE + L HSE+LA++ GLI+ P+ + IR+ KNLR+CGDCH+ K +S IT
Sbjct: 1003 QNVKDIKEEEEEEYLLQHSERLALSLGLISLPKKSTIRVFKNLRICGDCHTATKFISKIT 1062
Query: 552 RRVIIVRDANRFHHFEGGACSCRDYW 577
R II RD NRFHHFE G CSC DYW
Sbjct: 1063 GRRIIARDTNRFHHFENGKCSCGDYW 1088
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 577 | ||||||
| TAIR|locus:2118964 | 823 | EMB2758 "embryo defective 2758 | 0.596 | 0.417 | 0.531 | 2.1e-124 | |
| TAIR|locus:2102852 | 657 | CRR2 "AT3G46790" [Arabidopsis | 0.589 | 0.517 | 0.491 | 2.6e-117 | |
| TAIR|locus:2103483 | 890 | OTP84 "ORGANELLE TRANSCRIPT PR | 0.596 | 0.386 | 0.495 | 5.3e-117 | |
| TAIR|locus:2131939 | 792 | MEF29 "AT4G30700" [Arabidopsis | 0.623 | 0.454 | 0.506 | 1.4e-116 | |
| TAIR|locus:2202074 | 809 | CRR22 "CHLORORESPIRATORY REDUC | 0.585 | 0.417 | 0.501 | 7.8e-114 | |
| TAIR|locus:2056794 | 630 | REME1 "required for efficiency | 0.594 | 0.544 | 0.483 | 7e-113 | |
| TAIR|locus:505006130 | 970 | AT1G18485 [Arabidopsis thalian | 0.597 | 0.355 | 0.468 | 1.5e-110 | |
| TAIR|locus:2125899 | 990 | AT4G33170 [Arabidopsis thalian | 0.587 | 0.342 | 0.471 | 2.4e-110 | |
| TAIR|locus:2057574 | 583 | AT2G33760 [Arabidopsis thalian | 0.587 | 0.581 | 0.491 | 3.9e-110 | |
| TAIR|locus:2178188 | 995 | MEF7 "AT5G09950" [Arabidopsis | 0.587 | 0.340 | 0.472 | 2.1e-109 |
| TAIR|locus:2118964 EMB2758 "embryo defective 2758" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1001 (357.4 bits), Expect = 2.1e-124, Sum P(2) = 2.1e-124
Identities = 183/344 (53%), Positives = 247/344 (71%)
Query: 234 NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDL 293
N LDV + T++ DMY KCG ++ A +F ++ + N + W+ +IA +G+HG G+KA+ L
Sbjct: 480 NGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVML 539
Query: 294 FPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLG 353
F ML V P+ ITFV+LL ACSH+GLV+EG F M D+ + P +KHY CMVD+ G
Sbjct: 540 FKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYG 599
Query: 354 RAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVL 413
RAG+L+ ALK I+SMS++ D +WGALL ACR+H NVDL ++A++ L E +P++ G++VL
Sbjct: 600 RAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVL 659
Query: 414 LSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRM 473
LSN+YA+AG+W+ V +IR + + L+K PGW+ +EV+NK+ F G+ THP EE+YR
Sbjct: 660 LSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRE 719
Query: 474 LVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKN 533
L L KL++ GY+PD F L DV+++ K L SHSE+LAIAF LIATP T IRI KN
Sbjct: 720 LTALQAKLKMIGYVPDHRFVLQDVEDDEKEHILMSHSERLAIAFALIATPAKTTIRIFKN 779
Query: 534 LRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
LRVCGDCHS K +S IT R IIVRD+NRFHHF+ G CSC DYW
Sbjct: 780 LRVCGDCHSVTKFISKITEREIIVRDSNRFHHFKNGVCSCGDYW 823
|
|
| TAIR|locus:2102852 CRR2 "AT3G46790" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 932 (333.1 bits), Expect = 2.6e-117, Sum P(2) = 2.6e-117
Identities = 168/342 (49%), Positives = 238/342 (69%)
Query: 238 LDVILG--TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFP 295
LD IL +A++ MY +CG ++ + +FDRM ++V+SW+++I++YG HG GKKA+ +F
Sbjct: 316 LDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFE 375
Query: 296 MMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRA 355
ML++ P +TFVS+L ACSH GLVEEG RLF +MW D ++P ++HY CMVDLLGRA
Sbjct: 376 EMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRA 435
Query: 356 GRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLS 415
RLDEA K+++ M E +WG+LLG+CRIH NV+LAE A++ L +P+N G+YVLL+
Sbjct: 436 NRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGNYVLLA 495
Query: 416 NVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLV 475
++YA A W +V +++ L+ R L+K+PG W+EV K++ F D +P E+I+ LV
Sbjct: 496 DIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSVDEFNPLMEQIHAFLV 555
Query: 476 TLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLR 535
L+E ++ GYIP T L++++ E K + HSEKLA+AFGLI T +G IRI KNLR
Sbjct: 556 KLAEDMKEKGYIPQTKGVLYELETEEKERIVLGHSEKLALAFGLINTSKGEPIRITKNLR 615
Query: 536 VCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
+C DCH F K +S + I+VRD NRFH F+ G CSC DYW
Sbjct: 616 LCEDCHLFTKFISKFMEKEILVRDVNRFHRFKNGVCSCGDYW 657
|
|
| TAIR|locus:2103483 OTP84 "ORGANELLE TRANSCRIPT PROCESSING 84" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 944 (337.4 bits), Expect = 5.3e-117, Sum P(2) = 5.3e-117
Identities = 171/345 (49%), Positives = 243/345 (70%)
Query: 234 NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDL 293
N DV +G+A++DMYAKCG + +R++FD++ QKNVI+W+ +I AYG HG G++A+DL
Sbjct: 546 NNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDL 605
Query: 294 FPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLG 353
MM+ V PN +TF+S+ ACSH+G+V+EGLR+F M D+ V P HY C+VDLLG
Sbjct: 606 LRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLG 665
Query: 354 RAGRLDEALKLIESMSVEKDE-GLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYV 412
RAGR+ EA +L+ M + ++ G W +LLGA RIH N+++ E+AA++L++ +P HYV
Sbjct: 666 RAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYV 725
Query: 413 LLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYR 472
LL+N+Y++AG W ++R M + ++K PG +WIE +++H+F GDS+HPQSE++
Sbjct: 726 LLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSG 785
Query: 473 MLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMK 532
L TL E++ GY+PDT+ LH+V+E+ K L HSEKLAIAFG++ T GT IR+ K
Sbjct: 786 YLETLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAK 845
Query: 533 NLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
NLRVC DCH K +S I R II+RD RFH F+ G CSC DYW
Sbjct: 846 NLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNGTCSCGDYW 890
|
|
| TAIR|locus:2131939 MEF29 "AT4G30700" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 965 (344.8 bits), Expect = 1.4e-116, Sum P(2) = 1.4e-116
Identities = 183/361 (50%), Positives = 243/361 (67%)
Query: 218 QMPTRDLVTWTV-MIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSA 276
Q+ L W ++ + F + + TA+I MYAKCGSI AR +FD M +KN ++W+
Sbjct: 432 QLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNT 491
Query: 277 MIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDF 336
MI+ YG HGQG++AL++F ML+S + P +TF+ +LYACSH GLV+EG +F+SM +
Sbjct: 492 MISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRY 551
Query: 337 AVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMA 396
P VKHY CMVD+LGRAG L AL+ IE+MS+E +W LLGACRIHK+ +LA
Sbjct: 552 GFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACRIHKDTNLARTV 611
Query: 397 AKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQ 456
++ L E P N G++VLLSN+++ + A +R +R+L K PG+T IE+ H
Sbjct: 612 SEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHV 671
Query: 457 FSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIA 516
F+ GD +HPQ +EIY L L K+ AGY P+T LHDV+EE + + HSE+LAIA
Sbjct: 672 FTSGDQSHPQVKEIYEKLEKLEGKMREAGYQPETELALHDVEEEERELMVKVHSERLAIA 731
Query: 517 FGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDY 576
FGLIAT GT IRI+KNLRVC DCH+ K +S IT RVI+VRDANRFHHF+ G CSC DY
Sbjct: 732 FGLIATEPGTEIRIIKNLRVCLDCHTVTKLISKITERVIVVRDANRFHHFKDGVCSCGDY 791
Query: 577 W 577
W
Sbjct: 792 W 792
|
|
| TAIR|locus:2202074 CRR22 "CHLORORESPIRATORY REDUCTION22" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 900 (321.9 bits), Expect = 7.8e-114, Sum P(2) = 7.8e-114
Identities = 170/339 (50%), Positives = 236/339 (69%)
Query: 239 DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMML 298
+V + TA++DMYAKCG+I AR IFD M +++V +W+AMI YG HG GK AL+LF M
Sbjct: 472 NVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQ 531
Query: 299 SSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRL 358
+ PN +TF+S++ ACSH+GLVE GL+ F M +++++ + HY MVDLLGRAGRL
Sbjct: 532 KGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRL 591
Query: 359 DEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVY 418
+EA I M V+ ++GA+LGAC+IHKNV+ AE AA+ L E P + G++VLL+N+Y
Sbjct: 592 NEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIY 651
Query: 419 ANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLS 478
A W+ V ++R M R+ L+K PG + +E++N++H F G + HP S++IY L L
Sbjct: 652 RAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLI 711
Query: 479 EKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCG 538
++ AGY+PDTN L V+ +VK L +HSEKLAI+FGL+ T GT I + KNLRVC
Sbjct: 712 CHIKEAGYVPDTNLVL-GVENDVKEQLLSTHSEKLAISFGLLNTTAGTTIHVRKNLRVCA 770
Query: 539 DCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
DCH+ K++S +T R I+VRD RFHHF+ GACSC DYW
Sbjct: 771 DCHNATKYISLVTGREIVVRDMQRFHHFKNGACSCGDYW 809
|
|
| TAIR|locus:2056794 REME1 "required for efficiency of mitochondrial editing 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 891 (318.7 bits), Expect = 7.0e-113, Sum P(2) = 7.0e-113
Identities = 166/343 (48%), Positives = 230/343 (67%)
Query: 235 KFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLF 294
K+ D+IL A++DMY KCGS++ A +F++M++++VI+WS MI+ +G ++AL LF
Sbjct: 288 KYDQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLF 347
Query: 295 PMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGR 354
M SS PN IT V +L+ACSH GL+E+G F SM + + P +HY CM+DLLG+
Sbjct: 348 ERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGK 407
Query: 355 AGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLL 414
AG+LD+A+KL+ M E D W LLGACR+ +N+ LAE AAK ++ P++ G Y LL
Sbjct: 408 AGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLL 467
Query: 415 SNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRML 474
SN+YAN+ +W V +IR M R +KK PG +WIEV +IH F +GD++HPQ E+ + L
Sbjct: 468 SNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVSKKL 527
Query: 475 VTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNL 534
L +L GY+P+TNF L D++ E +L HSEKLA+AFGL+ P IRI KNL
Sbjct: 528 NQLIHRLTGIGYVPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTLPIEKVIRIRKNL 587
Query: 535 RVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
R+CGDCH F K S + R I++RD R+HHF+ G CSC DYW
Sbjct: 588 RICGDCHVFCKLASKLEIRSIVIRDPIRYHHFQDGKCSCGDYW 630
|
|
| TAIR|locus:505006130 AT1G18485 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 872 (312.0 bits), Expect = 1.5e-110, Sum P(2) = 1.5e-110
Identities = 163/348 (46%), Positives = 229/348 (65%)
Query: 233 ANKFLL--DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKA 290
A K LL D + ++IDMYAK GSI + ++F+ +++K+ SW+AMI YG HG K+A
Sbjct: 623 ALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEA 682
Query: 291 LDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVD 350
+ LF M + P+ +TF+ +L AC+H+GL+ EGLR M F ++P++KHY C++D
Sbjct: 683 IKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVID 742
Query: 351 LLGRAGRLDEALKLI-ESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPG 409
+LGRAG+LD+AL+++ E MS E D G+W +LL +CRIH+N+++ E A L E +P+ P
Sbjct: 743 MLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPE 802
Query: 410 HYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEE 469
+YVLLSN+YA G+W+DV K+R M L+K G +WIE+ K+ F VG+ EE
Sbjct: 803 NYVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNRKVFSFVVGERFLDGFEE 862
Query: 470 IYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIR 529
I + L K+ GY PDT HD+ EE K+ L HSEKLA+ +GLI T EGT IR
Sbjct: 863 IKSLWSILEMKISKMGYRPDTMSVQHDLSEEEKIEQLRGHSEKLALTYGLIKTSEGTTIR 922
Query: 530 IMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
+ KNLR+C DCH+ K +S + R I+VRD RFHHF+ G CSC DYW
Sbjct: 923 VYKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFKNGVCSCGDYW 970
|
|
| TAIR|locus:2125899 AT4G33170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 897 (320.8 bits), Expect = 2.4e-110, Sum P(2) = 2.4e-110
Identities = 160/339 (47%), Positives = 234/339 (69%)
Query: 239 DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMML 298
D +GT+++DMYAKCGSID A +F R+ N+ +W+AM+ HG+GK+ L LF M
Sbjct: 652 DPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMK 711
Query: 299 SSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRL 358
S + P+++TF+ +L ACSH+GLV E + SM D+ ++P+++HY+C+ D LGRAG +
Sbjct: 712 SLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLV 771
Query: 359 DEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVY 418
+A LIESMS+E ++ LL ACR+ + + + A LLE +P + YVLLSN+Y
Sbjct: 772 KQAENLIESMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMY 831
Query: 419 ANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLS 478
A A +W ++ R +M ++KK PG++WIEV+NKIH F V D ++ Q+E IYR + +
Sbjct: 832 AAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHIFVVDDRSNRQTELIYRKVKDMI 891
Query: 479 EKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCG 538
++ GY+P+T+F L DV+EE K LY HSEKLA+AFGL++TP T IR++KNLRVCG
Sbjct: 892 RDIKQEGYVPETDFTLVDVEEEEKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCG 951
Query: 539 DCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
DCH+ +K+++ + R I++RDANRFH F+ G CSC DYW
Sbjct: 952 DCHNAMKYIAKVYNREIVLRDANRFHRFKDGICSCGDYW 990
|
|
| TAIR|locus:2057574 AT2G33760 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 889 (318.0 bits), Expect = 3.9e-110, Sum P(2) = 3.9e-110
Identities = 169/344 (49%), Positives = 237/344 (68%)
Query: 238 LDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMM 297
L+V LGTA+I++Y++CG + ARE+FD+M++ NV +W+AMI+AYG HG G++A++LF M
Sbjct: 241 LNVKLGTALINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAYGTHGYGQQAVELFNKM 300
Query: 298 LSS-RVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAG 356
+PN +TFV++L AC+H GLVEEG ++ M + + P V+H+ CMVD+LGRAG
Sbjct: 301 EDDCGPIPNNVTFVAVLSACAHAGLVEEGRSVYKRMTKSYRLIPGVEHHVCMVDMLGRAG 360
Query: 357 RLDEALKLIESMSVEKDE---GLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVL 413
LDEA K I + LW A+LGAC++H+N DL AK L+ +P NPGH+V+
Sbjct: 361 FLDEAYKFIHQLDATGKATAPALWTAMLGACKMHRNYDLGVEIAKRLIALEPDNPGHHVM 420
Query: 414 LSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRM 473
LSN+YA +G+ +V+ IRD M R L+K G++ IEVENK + FS+GD +H ++ EIYR
Sbjct: 421 LSNIYALSGKTDEVSHIRDGMMRNNLRKQVGYSVIEVENKTYMFSMGDESHQETGEIYRY 480
Query: 474 LVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKN 533
L TL + + GY P + +H V+EE K L HSEKLA+AFGL+ T + I I+KN
Sbjct: 481 LETLISRCKEIGYAPVSEEVMHQVEEEEKEFALRYHSEKLAVAFGLLKTVD-VAITIVKN 539
Query: 534 LRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
LR+C DCHS K++S ++ R I VRD RFHHF+ G+CSC DYW
Sbjct: 540 LRICEDCHSAFKYISIVSNRQITVRDKLRFHHFQNGSCSCLDYW 583
|
|
| TAIR|locus:2178188 MEF7 "AT5G09950" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 867 (310.3 bits), Expect = 2.1e-109, Sum P(2) = 2.1e-109
Identities = 162/343 (47%), Positives = 233/343 (67%)
Query: 239 DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMM- 297
DV++G+A++DMY+KCG +D A F+ M +N SW++MI+ Y HGQG++AL LF M
Sbjct: 653 DVVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFETMK 712
Query: 298 LSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGR 357
L + P+ +TFV +L ACSH GL+EEG + F SM D + + P ++H++CM D+LGRAG
Sbjct: 713 LDGQTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADVLGRAGE 772
Query: 358 LDEALKLIESMSVEKDEGLWGALLGAC-RIH-KNVDLAEMAAKSLLERQPQNPGHYVLLS 415
LD+ IE M ++ + +W +LGAC R + + +L + AA+ L + +P+N +YVLL
Sbjct: 773 LDKLEDFIEKMPMKPNVLIWRTVLGACCRANGRKAELGKKAAEMLFQLEPENAVNYVLLG 832
Query: 416 NVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLV 475
N+YA GRW+D+ K R M +KK G++W+ +++ +H F GD +HP ++ IY+ L
Sbjct: 833 NMYAAGGRWEDLVKARKKMKDADVKKEAGYSWVTMKDGVHMFVAGDKSHPDADVIYKKLK 892
Query: 476 TLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGT-HIRIMKNL 534
L+ K+ AGY+P T F L+D+++E K L HSEKLA+AF L A T IRIMKNL
Sbjct: 893 ELNRKMRDAGYVPQTGFALYDLEQENKEEILSYHSEKLAVAFVLAAQRSSTLPIRIMKNL 952
Query: 535 RVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
RVCGDCHS K++S I R II+RD+NRFHHF+ GACSC D+W
Sbjct: 953 RVCGDCHSAFKYISKIEGRQIILRDSNRFHHFQDGACSCSDFW 995
|
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00021587001 | SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (633 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 577 | |||
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-133 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-119 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 6e-33 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-32 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-26 | |
| pfam14432 | 116 | pfam14432, DYW_deaminase, DYW family of nucleic ac | 2e-26 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-10 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-08 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.002 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.003 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 403 bits (1036), Expect = e-133
Identities = 185/506 (36%), Positives = 287/506 (56%), Gaps = 49/506 (9%)
Query: 73 IFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGG 132
+Q+H ++ G + + V+ L+ +Y+ + DA +F+GM E+ +V+W+ M+ G
Sbjct: 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAG 299
Query: 133 FSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDID 192
++ + E G+ +D +T +IR + + H ++++G
Sbjct: 300 YALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFP-- 357
Query: 193 QFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAK 252
LD++ TA++D+Y+K
Sbjct: 358 ---------------------------------------------LDIVANTALVDLYSK 372
Query: 253 CGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSL 312
G ++ AR +FDRM +KN+ISW+A+IA YG HG+G KA+++F M++ V PN +TF+++
Sbjct: 373 WGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAV 432
Query: 313 LYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEK 372
L AC ++GL E+G +F SM ++ ++P HY CM++LLGR G LDEA +I +
Sbjct: 433 LSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKP 492
Query: 373 DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRD 432
+W ALL ACRIHKN++L +AA+ L P+ +YV+L N+Y ++GR + AK+ +
Sbjct: 493 TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVE 552
Query: 433 LMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNF 492
+ R+ L P TWIEV+ + H F GD HPQS EIY+ L L +++ GY+ + N
Sbjct: 553 TLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENE 612
Query: 493 ELHDVDE-EVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAIT 551
L DVDE E KV Y HSEKLAIAFGLI T E T ++I ++ R+C DCH IK ++ +T
Sbjct: 613 LLPDVDEDEEKVSGRY-HSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVT 671
Query: 552 RRVIIVRDANRFHHFEGGACSCRDYW 577
+R I+VRDA+RFHHF+ G CSC DYW
Sbjct: 672 KREIVVRDASRFHHFKLGKCSCGDYW 697
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 372 bits (957), Expect = e-119
Identities = 181/503 (35%), Positives = 282/503 (56%), Gaps = 60/503 (11%)
Query: 78 QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVA 137
++H G ++ ++VAN L+ +Y+ K + A +F+ + E+D +SW+ ++ G
Sbjct: 410 KLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLR--- 466
Query: 138 DFIN--CFET---FREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDID 192
+N CFE FR+ + ++ +S TL + AC ++ G+ IH VL++G+ D
Sbjct: 467 --LNNRCFEALIFFRQML-LTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFD 523
Query: 193 QFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAK 252
F L A++D+Y +
Sbjct: 524 GF-----------------------------------------------LPNALLDLYVR 536
Query: 253 CGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSL 312
CG ++ A F+ +K+V+SW+ ++ Y HG+G A++LF M+ S V P+ +TF+SL
Sbjct: 537 CGRMNYAWNQFN-SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISL 595
Query: 313 LYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEK 372
L ACS +G+V +GL F SM + +++ P++KHY C+VDLLGRAG+L EA I M +
Sbjct: 596 LCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITP 655
Query: 373 DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRD 432
D +WGALL ACRIH++V+L E+AA+ + E P + G+Y+LL N+YA+AG+W +VA++R
Sbjct: 656 DPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRK 715
Query: 433 LMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNF 492
M L PG +W+EV+ K+H F D +HPQ +EI +L EK++ +G +
Sbjct: 716 TMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESS 775
Query: 493 ELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITR 552
+ + E K HSE+LAIAFGLI T G I + KNL +C +CH+ +K +S I R
Sbjct: 776 SMDE-IEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVR 834
Query: 553 RVIIVRDANRFHHFEGGACSCRD 575
R I VRD +FHHF+ G CSC D
Sbjct: 835 REISVRDTEQFHHFKDGECSCGD 857
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 133 bits (337), Expect = 6e-33
Identities = 91/385 (23%), Positives = 160/385 (41%), Gaps = 72/385 (18%)
Query: 64 ISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDS 123
+ + ++ ++I ++ V+ + + G + + N++L ++ L DA LF+ M ER+
Sbjct: 130 VEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNL 189
Query: 124 VSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDI 183
SW ++GG ++ F FRE G + T ++RA G+ +H
Sbjct: 190 ASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCC 249
Query: 184 VLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILG 243
VLK+G+ D FV AL+DMY+KC I+DAR +FD MP
Sbjct: 250 VLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----------------------- 286
Query: 244 TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVL 303
+K ++W++M+A Y HG ++AL L+ M S V
Sbjct: 287 ------------------------EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS 322
Query: 304 PNRITFVSLLYACS-----------HTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLL 352
++ TF ++ S H GL+ G L D+ T +VDL
Sbjct: 323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPL------------DIVANTALVDLY 370
Query: 353 GRAGRLDEALKLIESMSVEKDEGLWGALLGACRIH-KNVDLAEMAAKSLLERQPQNPGHY 411
+ GR+++A + + M K+ W AL+ H + EM + + E N +
Sbjct: 371 SKWGRMEDARNVFDRMPR-KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTF 429
Query: 412 VLLSNVYANAGRWQDVAKIRDLMTR 436
+ + + +G + +I M+
Sbjct: 430 LAVLSACRYSGLSEQGWEIFQSMSE 454
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 132 bits (333), Expect = 3e-32
Identities = 93/382 (24%), Positives = 157/382 (41%), Gaps = 65/382 (17%)
Query: 10 LVSISAKLRFFSSSTTAAIALEPHGHEQNPMNPRVPMQMGPDCQFTRSVDPKFFISSLLS 69
L ++ S + AL HG + + MQ + VD +++
Sbjct: 41 LSVAASSSSSTHDSNSQLRALCSHGQLEQALKLLESMQ-----ELRVPVDEDAYVALFRL 95
Query: 70 C---RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSW 126
C R + + +V ++ ++ + + N +L ++ L A +F M ERD SW
Sbjct: 96 CEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSW 155
Query: 127 SVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLK 186
+V+VGG++K F + + G++ D YT P V+R C D+ GR +H V++
Sbjct: 156 NVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVR 215
Query: 187 SGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAV 246
G ++D +DV+ A+
Sbjct: 216 FGFELD---------------------------------------------VDVV--NAL 228
Query: 247 IDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNR 306
I MY KCG + SAR +FDRM +++ ISW+AMI+ Y +G+ + L+LF M V P+
Sbjct: 229 ITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDL 288
Query: 307 ITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP----DVKHYTCMVDLLGRAGRLDEAL 362
+T S++ AC G G + + V+ DV ++ + G EA
Sbjct: 289 MTITSVISACELLGDERLGREMHG-----YVVKTGFAVDVSVCNSLIQMYLSLGSWGEAE 343
Query: 363 KLIESMSVEKDEGLWGALLGAC 384
K+ M KD W A++
Sbjct: 344 KVFSRMET-KDAVSWTAMISGY 364
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 1e-26
Identities = 79/323 (24%), Positives = 140/323 (43%), Gaps = 63/323 (19%)
Query: 77 RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
R++H +V G ++ V N L+ +Y + +A +F+ M+ +D+VSW+ M+ G+ K
Sbjct: 308 REMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKN 367
Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
ET+ + + D T+ V+ AC D+ +G +H++ + G
Sbjct: 368 GLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKG-------- 419
Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSI 256
+ V++ A+I+MY+KC I
Sbjct: 420 ---------------------------------------LISYVVVANALIEMYSKCKCI 440
Query: 257 DSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYAC 316
D A E+F + +K+VISW+++IA + + +AL F ML + + PN +T ++ L AC
Sbjct: 441 DKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSAC 499
Query: 317 SHTGLVEEGLRLFSSM------WDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSV 370
+ G + G + + + +D F P+ ++DL R GR++ A S
Sbjct: 500 ARIGALMCGKEIHAHVLRTGIGFDGFL--PNA-----LLDLYVRCGRMNYAWNQFNSH-- 550
Query: 371 EKDEGLWGALLGACRIHKNVDLA 393
EKD W LL H +A
Sbjct: 551 EKDVVSWNILLTGYVAHGKGSMA 573
|
Length = 857 |
| >gnl|CDD|222749 pfam14432, DYW_deaminase, DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Score = 104 bits (260), Expect = 2e-26
Identities = 49/131 (37%), Positives = 68/131 (51%), Gaps = 21/131 (16%)
Query: 443 PGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVK 502
PG W E + GD +HP S L +++++ G +P+T HDVD E
Sbjct: 1 PGCVWSE----GKKTLSGDGSHPTS------KEELFQRIKVEGVVPETKEIGHDVDAEEF 50
Query: 503 VGN------LYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVII 556
N L SH+EK A+A+GL T I R+CGDCH F ++++ T R II
Sbjct: 51 RDNGIKGKLLASHAEKQALAYGL-----LTTRIIKVLKRMCGDCHEFFRYIAKYTGREII 105
Query: 557 VRDANRFHHFE 567
VRD +RFHHF+
Sbjct: 106 VRDPSRFHHFK 116
|
A family of nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members of this family are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. The classical DYW family contain an additional C-terminal metal-binding cluster composed of 2 histidines and a CxC motif and are often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems. Length = 116 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 63.4 bits (154), Expect = 2e-10
Identities = 37/135 (27%), Positives = 65/135 (48%), Gaps = 5/135 (3%)
Query: 239 DVILGTAVIDMYAKCGSIDSAREIFDRMR----QKNVISWSAMIAAYGYHGQGKKALDLF 294
D L T +I AK G +D+ E+F M + NV ++ A+I GQ KA +
Sbjct: 471 DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAY 530
Query: 295 PMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSM-WDDFAVRPDVKHYTCMVDLLG 353
+M S V P+R+ F +L+ AC +G V+ + + M + + PD ++
Sbjct: 531 GIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACA 590
Query: 354 RAGRLDEALKLIESM 368
AG++D A ++ + +
Sbjct: 591 NAGQVDRAKEVYQMI 605
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 2e-09
Identities = 64/274 (23%), Positives = 117/274 (42%), Gaps = 35/274 (12%)
Query: 168 CRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTW 227
C +DI + +V ++GL D + L+ AK +D ++F +M V
Sbjct: 447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEM-----VNA 501
Query: 228 TVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNV----ISWSAMIAAYGY 283
V + F A+ID A+ G + A + MR KNV + ++A+I+A G
Sbjct: 502 GVEANVHTF-------GALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQ 554
Query: 284 HGQGKKALDLFPMMLSSR--VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD 341
G +A D+ M + + P+ IT +L+ AC++ G V+ ++ + ++ ++
Sbjct: 555 SGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI-HEYNIKGT 613
Query: 342 VKHYTCMVDLLGRAGRLDEALKLIESMS---VEKDEGLWGALLGACRIHKNVD-----LA 393
+ YT V+ + G D AL + + M V+ DE + AL+ ++D L
Sbjct: 614 PEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQ 673
Query: 394 EMAAKSLLERQPQNPG--HYVLLSNVYANAGRWQ 425
+ + + G Y L +NA W+
Sbjct: 674 DARKQGI------KLGTVSYSSLMGACSNAKNWK 701
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 48.2 bits (116), Expect = 9e-08
Identities = 13/50 (26%), Positives = 25/50 (50%)
Query: 269 KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSH 318
+V++++ +I Y G+ ++AL LF M + PN T+ L+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 1e-05
Identities = 51/217 (23%), Positives = 90/217 (41%), Gaps = 29/217 (13%)
Query: 159 YTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQ 218
YT+ + +C + D I+D + K G+ D+ +ALVD+ +D A ++
Sbjct: 617 YTI--AVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQD 674
Query: 219 MPTRDLVTWTVMIGANKFLLDVILGTAVID--MYAKCGSID--SAREIFDRMR----QKN 270
+ + LGT M A + + A E+++ ++ +
Sbjct: 675 ARKQGIK----------------LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPT 718
Query: 271 VISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFS 330
V + +A+I A Q KAL++ M + PN IT+ LL A + GL L S
Sbjct: 719 VSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLS 778
Query: 331 SMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIES 367
+D ++P++ C+ L R R ++A L E
Sbjct: 779 QAKED-GIKPNLVMCRCITGLCLR--RFEKACALGEP 812
|
Length = 1060 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.5 bits (91), Expect = 2e-04
Identities = 15/32 (46%), Positives = 24/32 (75%)
Query: 338 VRPDVKHYTCMVDLLGRAGRLDEALKLIESMS 369
++PDV Y ++D L RAGR+DEA++L++ M
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 4e-04
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Query: 239 DVILGTAVIDMYAKCGSIDSAREIFDRMRQK----NVISWSAMIAAY 281
DV+ +ID Y K G ++ A ++F+ M+++ NV ++S +I
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 35.8 bits (84), Expect = 0.002
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 340 PDVKHYTCMVDLLGRAGRLDEALKLIESM 368
PDV Y ++D + G+++EALKL M
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEM 29
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.002
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 244 TAVIDMYAKCGSIDSAREIFDRMRQKNV 271
++I Y K G ++ A E+F M++K V
Sbjct: 4 NSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.003
Identities = 9/31 (29%), Positives = 20/31 (64%)
Query: 272 ISWSAMIAAYGYHGQGKKALDLFPMMLSSRV 302
++++++I+ Y G+ ++AL+LF M V
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 577 | |||
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PF14432 | 116 | DYW_deaminase: DYW family of nucleic acid deaminas | 99.96 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.94 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.93 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.87 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.86 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.84 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.82 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.8 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.79 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.79 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.79 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.78 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.78 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.77 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.75 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.74 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.69 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.66 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.58 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.57 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.57 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.56 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.55 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.52 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.5 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.49 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.45 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.42 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.42 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.41 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.4 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.4 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.39 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.39 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.37 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.36 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.34 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.34 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.33 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.31 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.3 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.3 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.29 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.29 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.28 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.24 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.22 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.21 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.19 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.19 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.19 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.18 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.15 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.14 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.11 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.09 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.05 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.0 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.96 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.95 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.94 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.94 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 98.91 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.91 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 98.88 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.86 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.84 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.83 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.8 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.79 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.78 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.78 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.77 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.77 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.77 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.74 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.73 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.7 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.68 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.68 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.67 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.63 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.62 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.6 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.58 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.58 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.58 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.53 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.52 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.51 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.49 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.45 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.42 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.39 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.38 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.37 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.36 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.35 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.35 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.34 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.34 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.32 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.29 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.28 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.27 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.27 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.25 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.23 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.23 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.23 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.22 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.21 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.19 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.16 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.15 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.15 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.11 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.08 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.07 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.06 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.05 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.05 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.04 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.03 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.02 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.01 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.01 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.0 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.0 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 97.98 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.95 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 97.95 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.94 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.91 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.81 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.79 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.79 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.77 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.73 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.7 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.68 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.67 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.65 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.62 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.61 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.6 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.51 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.48 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.44 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.41 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.39 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.39 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.39 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.37 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.36 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.33 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.33 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.32 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.26 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.26 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.25 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.25 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.23 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.23 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.23 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.23 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.18 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.15 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.09 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.08 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.07 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.05 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.03 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.01 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.01 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.0 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.99 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.98 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 96.97 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.96 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.94 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.88 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.88 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 96.86 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.86 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.85 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.81 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.78 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.76 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.74 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.74 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.72 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.7 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.68 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.68 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.65 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 96.63 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.62 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.59 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.58 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.56 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.45 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.3 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.29 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.28 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.28 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.27 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.24 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.24 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.23 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.06 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.06 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 96.03 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.93 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.92 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.75 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.59 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.52 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.51 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.5 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.42 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.29 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 95.27 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.08 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 95.07 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.85 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 94.72 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 94.53 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.45 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.33 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.31 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.23 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 94.14 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.05 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.05 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 94.01 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.0 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 93.82 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 93.76 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 93.7 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 93.59 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 93.56 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 93.53 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 93.49 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 93.38 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 93.23 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.14 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 92.93 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 92.78 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 92.47 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 92.28 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 92.06 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 92.02 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 92.0 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 91.95 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 91.91 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 91.81 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 91.74 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 91.73 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 91.67 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 91.45 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 91.38 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 91.09 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 91.06 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 90.88 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 90.61 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 90.53 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 90.52 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 90.28 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 89.87 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 89.71 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 89.53 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 89.5 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 89.24 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 89.02 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 88.9 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 88.62 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 88.59 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 88.38 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 88.12 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 87.78 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 87.47 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 87.22 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 87.13 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 86.94 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 86.82 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 86.8 | |
| PRK09687 | 280 | putative lyase; Provisional | 86.63 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 86.58 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 86.55 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 86.54 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 86.43 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 86.42 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 86.2 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 86.19 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 85.15 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 84.89 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 84.6 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 84.52 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 84.05 | |
| KOG1498 | 439 | consensus 26S proteasome regulatory complex, subun | 83.41 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 83.33 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 83.12 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 83.04 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 82.02 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 81.81 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 81.7 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 81.7 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 81.03 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 80.93 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 80.86 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 80.75 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 80.09 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 80.08 |
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-112 Score=926.25 Aligned_cols=555 Identities=39% Similarity=0.689 Sum_probs=543.4
Q ss_pred cccchhhHHHhhccCCCCCCCCCcccCccCCCCCCCCCCCChhhHHHHHHhccC---hHHHHHHHHHHHHcCCCCCHHHH
Q 037414 19 FFSSSTTAAIALEPHGHEQNPMNPRVPMQMGPDCQFTRSVDPKFFISSLLSCRN---IFQIRQVHAQIVAGGTLTNLIVA 95 (577)
Q Consensus 19 ~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~a~~~---~~~a~~~~~~~~~~g~~~~~~~~ 95 (577)
...+|+++|.++.+.|++++|+++|.+|.... +..||..||+.+|.+|.+ ++.+.++|..|.+.|+.||+.+|
T Consensus 86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~----~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~ 161 (697)
T PLN03081 86 SGVSLCSQIEKLVACGRHREALELFEILEAGC----PFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMM 161 (697)
T ss_pred CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcC----CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHH
Confidence 44589999999999999999999999998652 357999999999999998 88999999999999999999999
Q ss_pred HHHHHHHHcCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCChH
Q 037414 96 NKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIV 175 (577)
Q Consensus 96 ~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 175 (577)
|.|+++|+++|++++|.++|++|++||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|..+
T Consensus 162 n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~ 241 (697)
T PLN03081 162 NRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSAR 241 (697)
T ss_pred HHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhc----------------------
Q 037414 176 MGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA---------------------- 233 (577)
Q Consensus 176 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~---------------------- 233 (577)
.+.+++..+.+.|+.+|..++|+||++|+++|++++|.++|++|.++|+++||++|.+
T Consensus 242 ~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~ 321 (697)
T PLN03081 242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGV 321 (697)
T ss_pred HHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999999999999999999988
Q ss_pred --------------------------------CCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHH
Q 037414 234 --------------------------------NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAY 281 (577)
Q Consensus 234 --------------------------------~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 281 (577)
.|++||..+||+||++|+++|++++|.++|++|.+||+++||+||.+|
T Consensus 322 ~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y 401 (697)
T PLN03081 322 SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGY 401 (697)
T ss_pred CCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHH
Confidence 788999999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 037414 282 GYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEA 361 (577)
Q Consensus 282 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 361 (577)
+++|+.++|+++|++|.+.|+.||..||++++.+|++.|++++|.++|+.|.+++|+.|+..+|++++++|++.|++++|
T Consensus 402 ~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA 481 (697)
T PLN03081 402 GNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA 481 (697)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHH
Confidence 99999999999999999999999999999999999999999999999999988889999999999999999999999999
Q ss_pred HHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCCCcc
Q 037414 362 LKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKK 441 (577)
Q Consensus 362 ~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~ 441 (577)
.+++++|+..|+..+|++|+.+|..+|+++.|..+++++.+.+|++..+|..|+++|++.|+|++|.++++.|+++|+++
T Consensus 482 ~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k 561 (697)
T PLN03081 482 YAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSM 561 (697)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEEEECCEEEEEEecCCCCcccHHHHHHHHHHHHHHHHCCcccCCCccccccchhhhhccccccchHhHHHhcccc
Q 037414 442 IPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIA 521 (577)
Q Consensus 442 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 521 (577)
.||+||+++++.+|.|++||..||+.++++..+.++..+|++.||.||+.++++++++++|+..++.|||+||++|||+.
T Consensus 562 ~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~ 641 (697)
T PLN03081 562 HPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLIN 641 (697)
T ss_pred CCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeEEEEecccccCCchhhHHhhhhccCceEEEecCCcccccccccccCCCCC
Q 037414 522 TPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577 (577)
Q Consensus 522 ~~~~~~~~~~~~l~~~~~~~~~~~~is~~~~~~~~~~~~~~~h~~~~g~~s~~~~w 577 (577)
+|+|.||||+||||+|+|||+|+|+||++++|+|||||.+|||||+||+|||+|||
T Consensus 642 ~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 642 TSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred CCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 99999999999999999999999999999999999999999999999999999999
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-109 Score=923.39 Aligned_cols=551 Identities=37% Similarity=0.667 Sum_probs=536.1
Q ss_pred ccccchhhHHHhhccCCCCCCCCCcccCccCCCCCCCCCCCChhhHHHHHHhccC---hHHHHHHHHHHHHcCCCCCHHH
Q 037414 18 RFFSSSTTAAIALEPHGHEQNPMNPRVPMQMGPDCQFTRSVDPKFFISSLLSCRN---IFQIRQVHAQIVAGGTLTNLIV 94 (577)
Q Consensus 18 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~a~~~---~~~a~~~~~~~~~~g~~~~~~~ 94 (577)
++..+|+++|.+|.+.|++++|+++|..|... |..||..||+++|.+|.+ ++.|.++|..+.+.|+.||..+
T Consensus 251 ~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~-----g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~ 325 (857)
T PLN03077 251 RDCISWNAMISGYFENGECLEGLELFFTMREL-----SVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSV 325 (857)
T ss_pred CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHc-----CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHH
Confidence 46778999999999999999999999999876 789999999999999998 8999999999999999999999
Q ss_pred HHHHHHHHHcCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCCh
Q 037414 95 ANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDI 174 (577)
Q Consensus 95 ~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 174 (577)
||+||.+|+++|++++|.++|++|.+||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++
T Consensus 326 ~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~ 405 (857)
T PLN03077 326 CNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDL 405 (857)
T ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhc---------------------
Q 037414 175 VMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA--------------------- 233 (577)
Q Consensus 175 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~--------------------- 233 (577)
+.|.++|+.+.+.|+.|+..++|+||++|+++|++++|.++|++|.++|+++||++|.+
T Consensus 406 ~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~ 485 (857)
T PLN03077 406 DVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTL 485 (857)
T ss_pred HHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999976
Q ss_pred --------------------------------CCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHH
Q 037414 234 --------------------------------NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAY 281 (577)
Q Consensus 234 --------------------------------~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 281 (577)
.|+.+|..++|+||++|+++|++++|.++|+++ .+|+++||+||.+|
T Consensus 486 ~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~ 564 (857)
T PLN03077 486 KPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGY 564 (857)
T ss_pred CCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHH
Confidence 456667777788889999999999999999999 99999999999999
Q ss_pred HHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 037414 282 GYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEA 361 (577)
Q Consensus 282 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 361 (577)
+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+++|+.|+..+|++++++|++.|++++|
T Consensus 565 ~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA 644 (857)
T PLN03077 565 VAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEA 644 (857)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999987889999999999999999999999999
Q ss_pred HHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCCCcc
Q 037414 362 LKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKK 441 (577)
Q Consensus 362 ~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~ 441 (577)
.+++++|+++||..+|++|+.+|..+|+.+.++.+.+++.+++|+++..|..|+++|+..|+|++|.++++.|+++|+++
T Consensus 645 ~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k 724 (857)
T PLN03077 645 YNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTV 724 (857)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEEEECCEEEEEEecCCCCcccHHHHHHHHHHHHHHHHCCcccCCCccccccchhhhhccccccchHhHHHhcccc
Q 037414 442 IPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIA 521 (577)
Q Consensus 442 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 521 (577)
.||+||+++++++|.|.+||.+||+.++||.+|+++..+|++.||.||+..++ ++++++|+..++.|||+||++|||++
T Consensus 725 ~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~-~~~~~~k~~~~~~hse~la~a~~l~~ 803 (857)
T PLN03077 725 DPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSM-DEIEVSKDDIFCGHSERLAIAFGLIN 803 (857)
T ss_pred CCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhc-cccHHHHHHHHHhccHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999998877 55778899999999999999999999
Q ss_pred CCCCCeEEEEecccccCCchhhHHhhhhccCceEEEecCCcccccccccccCCC
Q 037414 522 TPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRD 575 (577)
Q Consensus 522 ~~~~~~~~~~~~l~~~~~~~~~~~~is~~~~~~~~~~~~~~~h~~~~g~~s~~~ 575 (577)
+|+|.||||+||||+|+|||+++|+||++++|+|||||.+|||||++|+|||+|
T Consensus 804 ~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 804 TVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred CCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 999999999999999999999999999999999999999999999999999997
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-68 Score=589.98 Aligned_cols=536 Identities=23% Similarity=0.376 Sum_probs=483.7
Q ss_pred ccccchhhHHHhhccCCCCCCCCCcccCccCCCCCCCCCCCChhhHHHHHHhccC---hHHHHHHHHHHHHcCCCCCHHH
Q 037414 18 RFFSSSTTAAIALEPHGHEQNPMNPRVPMQMGPDCQFTRSVDPKFFISSLLSCRN---IFQIRQVHAQIVAGGTLTNLIV 94 (577)
Q Consensus 18 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~a~~~---~~~a~~~~~~~~~~g~~~~~~~ 94 (577)
...+.++.++.++.+.|++++|+++|..|... |..|+..+|..++.+|.. +..|.++|..+.+.|..++..+
T Consensus 49 ~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~-----g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 123 (857)
T PLN03077 49 SSTHDSNSQLRALCSHGQLEQALKLLESMQEL-----RVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRL 123 (857)
T ss_pred cchhhHHHHHHHHHhCCCHHHHHHHHHHHHhc-----CCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchH
Confidence 34555789999999999999999999999876 678999999999999987 8899999999999999999999
Q ss_pred HHHHHHHHHcCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCCh
Q 037414 95 ANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDI 174 (577)
Q Consensus 95 ~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 174 (577)
+|+|+.+|+++|+++.|.++|++|++||+++||++|.+|++.|++++|+++|++|...|+.||..||+.++++|+..+++
T Consensus 124 ~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~ 203 (857)
T PLN03077 124 GNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDL 203 (857)
T ss_pred HHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhc---------------------
Q 037414 175 VMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA--------------------- 233 (577)
Q Consensus 175 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~--------------------- 233 (577)
..+.+++..+.+.|+.||..++|+||++|+++|++++|.++|++|+++|+++||++|.+
T Consensus 204 ~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g 283 (857)
T PLN03077 204 ARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELS 283 (857)
T ss_pred hhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999987
Q ss_pred ---------------------------------CCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHH
Q 037414 234 ---------------------------------NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAA 280 (577)
Q Consensus 234 ---------------------------------~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 280 (577)
.|+.||..+||+|+++|+++|++++|.++|++|.+||.++||+||.+
T Consensus 284 ~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~ 363 (857)
T PLN03077 284 VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISG 363 (857)
T ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHH
Confidence 57889999999999999999999999999999999999999999999
Q ss_pred HHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHH
Q 037414 281 YGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDE 360 (577)
Q Consensus 281 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 360 (577)
|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+. |+.|+..+|++||++|+++|++++
T Consensus 364 ~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~-g~~~~~~~~n~Li~~y~k~g~~~~ 442 (857)
T PLN03077 364 YEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERK-GLISYVVVANALIEMYSKCKCIDK 442 (857)
T ss_pred HHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHh-CCCcchHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999999999999999999999999999999999999999754 999999999999999999999999
Q ss_pred HHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCCCc
Q 037414 361 ALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLK 440 (577)
Q Consensus 361 A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 440 (577)
|.++|++|. +||..+|++++.+|.+.|+.++|..+|++|.+..+++..+|..++.+|++.|..+.+.+++..|.+.|+.
T Consensus 443 A~~vf~~m~-~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~ 521 (857)
T PLN03077 443 ALEVFHNIP-EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIG 521 (857)
T ss_pred HHHHHHhCC-CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCC
Confidence 999999997 6899999999999999999999999999998766777788888888777777777777777777777664
Q ss_pred cCCc-----------------------------eeEEEECCEEEEEEecCCCCcccHHHHHHHHHHHHHHHHCCcccCCC
Q 037414 441 KIPG-----------------------------WTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTN 491 (577)
Q Consensus 441 ~~~~-----------------------------~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~ 491 (577)
++.. .+|..+ +.|+..|++.+++. +++++|++.|+.||..
T Consensus 522 ~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~l-------I~~~~~~G~~~~A~----~lf~~M~~~g~~Pd~~ 590 (857)
T PLN03077 522 FDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNIL-------LTGYVAHGKGSMAV----ELFNRMVESGVNPDEV 590 (857)
T ss_pred ccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHH-------HHHHHHcCCHHHHH----HHHHHHHHcCCCCCcc
Confidence 4321 223222 44566677777766 7899999999999999
Q ss_pred ccccccchhhhhccc---cccchHhHHHhccccCCCCCeEEEEecccccCCchhhHHhhhhccCce------EEEecCCc
Q 037414 492 FELHDVDEEVKVGNL---YSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRV------IIVRDANR 562 (577)
Q Consensus 492 ~~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~is~~~~~~------~~~~~~~~ 562 (577)
++...+..+.+.+.+ ....+.|.-.+|+.|...++. ++++.+..+|+..+|.++|.+|+.++ .++..|+.
T Consensus 591 T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~-~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~ 669 (857)
T PLN03077 591 TFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYA-CVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRI 669 (857)
T ss_pred cHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHH-HHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Confidence 998888888877765 445677776789887766555 79999999999999999999997554 55667777
Q ss_pred cccccccccc
Q 037414 563 FHHFEGGACS 572 (577)
Q Consensus 563 ~h~~~~g~~s 572 (577)
+.+.+.|+..
T Consensus 670 ~~~~e~~e~~ 679 (857)
T PLN03077 670 HRHVELGELA 679 (857)
T ss_pred cCChHHHHHH
Confidence 7777766543
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-59 Score=512.04 Aligned_cols=514 Identities=15% Similarity=0.177 Sum_probs=430.4
Q ss_pred ccccchhhHHHhhccCCCCCCCCCcccCccCCCCCCCCCCCChhhHHHHHHhccC---hHHHHHHHHHHHHcCCCCCHHH
Q 037414 18 RFFSSSTTAAIALEPHGHEQNPMNPRVPMQMGPDCQFTRSVDPKFFISSLLSCRN---IFQIRQVHAQIVAGGTLTNLIV 94 (577)
Q Consensus 18 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~a~~~---~~~a~~~~~~~~~~g~~~~~~~ 94 (577)
.....+..++..+.+.|++++|+++|+.|.... -..|+..+++.++.+|.+ ...|..++..|.. ||..+
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~g----vv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~T 439 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRG----LLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLST 439 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCC----CCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHH
Confidence 345567788888899999999999999998762 135777788888888876 8888888888863 99999
Q ss_pred HHHHHHHHHcCCChHHHHHHHhcCCC----CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhc
Q 037414 95 ANKLLYIYALHKALTDAHALFNGMKE----RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRD 170 (577)
Q Consensus 95 ~~~li~~~~~~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 170 (577)
||.||.+|++.|++++|.++|+.|.+ ||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++
T Consensus 440 yn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k 519 (1060)
T PLN03218 440 FNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCAR 519 (1060)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999974 68999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHH
Q 037414 171 RKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMY 250 (577)
Q Consensus 171 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~ 250 (577)
.|++++|.++|+.|.+.|+.||..+|+.||.+|++.|++++|.++|++|.... .|+.||..+|++||.+|
T Consensus 520 ~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~----------~gi~PD~vTynaLI~ay 589 (1060)
T PLN03218 520 AGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAET----------HPIDPDHITVGALMKAC 589 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhc----------CCCCCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999997531 46789999999999999
Q ss_pred HhcCCHHHHHHHHHhccC----CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 037414 251 AKCGSIDSAREIFDRMRQ----KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGL 326 (577)
Q Consensus 251 ~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 326 (577)
+++|++++|.++|++|.+ |+..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.
T Consensus 590 ~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~ 669 (1060)
T PLN03218 590 ANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAF 669 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHH
Confidence 999999999999999975 6779999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC---CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 037414 327 RLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM---SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLER 403 (577)
Q Consensus 327 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 403 (577)
++|+.|.+. |+.|+..+|++||++|+++|++++|.++|++| ++.||..+|++||.+|++.|++++|.++|++|.+.
T Consensus 670 ~l~~eM~k~-G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~ 748 (1060)
T PLN03218 670 EILQDARKQ-GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL 748 (1060)
T ss_pred HHHHHHHHc-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 999999754 99999999999999999999999999999998 67899999999999999999999999999999887
Q ss_pred C-CCCchhHHHHHHHHhccCChhHHHHHHHHHhhCCCccCCceeEEEE-------------CCEEEEEEecCCCCcccH-
Q 037414 404 Q-PQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEV-------------ENKIHQFSVGDSTHPQSE- 468 (577)
Q Consensus 404 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~s~~~~-------------~~~~~~~~~~~~~~~~~~- 468 (577)
+ .++..+|..++.+|.+.|++++|.+++++|.+.|+.++.......+ ...+..|-.+ ++...
T Consensus 749 Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g---~~~~~n 825 (1060)
T PLN03218 749 GLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSG---RPQIEN 825 (1060)
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcc---cccccc
Confidence 6 6677899999999999999999999999999999977652211111 0011111111 11100
Q ss_pred HHHHHHHHHHHHHHHCCcccCCCccccccchhhhhccccccchHhHHHhccccCCCCCeE--EEEecccccCCchhhHHh
Q 037414 469 EIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHI--RIMKNLRVCGDCHSFIKH 546 (577)
Q Consensus 469 ~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ 546 (577)
.-..+...++++|.+.|+.||..++...+....+.+. ......+--.+++.+.+++... .+++.+ |..-++|..+
T Consensus 826 ~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~-~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~--~~~~~~A~~l 902 (1060)
T PLN03218 826 KWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHD-ATLRNRLIENLGISADSQKQSNLSTLVDGF--GEYDPRAFSL 902 (1060)
T ss_pred chHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccccc-HHHHHHHHHHhccCCCCcchhhhHHHHHhh--ccChHHHHHH
Confidence 0112344899999999999999887665522222221 2334566666787777776443 244543 1112578888
Q ss_pred hhhccCceEE
Q 037414 547 VSAITRRVII 556 (577)
Q Consensus 547 is~~~~~~~~ 556 (577)
+.+|..+.|+
T Consensus 903 ~~em~~~Gi~ 912 (1060)
T PLN03218 903 LEEAASLGVV 912 (1060)
T ss_pred HHHHHHcCCC
Confidence 8888777643
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-57 Score=496.59 Aligned_cols=400 Identities=15% Similarity=0.180 Sum_probs=374.5
Q ss_pred chhhHHHhhccCCCCCCCCCcccCccCCCCCCCCCCCChhhHHHHHHhccC---hHHHHHHHHHHHHcCCCCCHHHHHHH
Q 037414 22 SSTTAAIALEPHGHEQNPMNPRVPMQMGPDCQFTRSVDPKFFISSLLSCRN---IFQIRQVHAQIVAGGTLTNLIVANKL 98 (577)
Q Consensus 22 ~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~a~~~---~~~a~~~~~~~~~~g~~~~~~~~~~l 98 (577)
.++.++.+|.+.|..++|+++|..|. .||..+|+.+|.+|.+ ++.|.++|+.|.+.|+.||..+||+|
T Consensus 408 ~~~~li~~~~~~g~~~eAl~lf~~M~---------~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsL 478 (1060)
T PLN03218 408 YHAKFFKACKKQRAVKEAFRFAKLIR---------NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTL 478 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHcC---------CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 34566777999999999999999885 3899999999999998 99999999999999999999999999
Q ss_pred HHHHHcCCChHHHHHHHhcCC----CCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCCh
Q 037414 99 LYIYALHKALTDAHALFNGMK----ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDI 174 (577)
Q Consensus 99 i~~~~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 174 (577)
|.+|+++|++++|.++|++|. .||..+||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++
T Consensus 479 I~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~ 558 (1060)
T PLN03218 479 ISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAV 558 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCH
Confidence 999999999999999999998 4799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH--cCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHh
Q 037414 175 VMGRLIHDIVLK--SGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAK 252 (577)
Q Consensus 175 ~~a~~~~~~~~~--~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~ 252 (577)
++|.++|++|.+ .|+.||..+|++||.+|+++|++++|.++|++|.+ .|+.|+..+||.+|.+|++
T Consensus 559 deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e------------~gi~p~~~tynsLI~ay~k 626 (1060)
T PLN03218 559 DRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHE------------YNIKGTPEVYTIAVNSCSQ 626 (1060)
T ss_pred HHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------cCCCCChHHHHHHHHHHHh
Confidence 999999999987 67899999999999999999999999999999988 4678899999999999999
Q ss_pred cCCHHHHHHHHHhccC----CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 037414 253 CGSIDSAREIFDRMRQ----KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRL 328 (577)
Q Consensus 253 ~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 328 (577)
.|++++|.++|++|.+ ||..+|+++|.+|++.|+.++|.++|++|.+.|+.||..+|++++.+|++.|++++|.++
T Consensus 627 ~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~l 706 (1060)
T PLN03218 627 KGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALEL 706 (1060)
T ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 9999999999999974 899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC---CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-
Q 037414 329 FSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM---SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQ- 404 (577)
Q Consensus 329 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~- 404 (577)
|++|.+ .|+.|+..+|++||.+|++.|++++|.++|++| ++.||..+|++++.+|.+.|++++|.+++++|.+.+
T Consensus 707 f~eM~~-~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi 785 (1060)
T PLN03218 707 YEDIKS-IKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGI 785 (1060)
T ss_pred HHHHHH-cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 999965 599999999999999999999999999999998 789999999999999999999999999999999987
Q ss_pred CCCchhHHHHHHHHhc----c-------------------CChhHHHHHHHHHhhCCCccCC
Q 037414 405 PQNPGHYVLLSNVYAN----A-------------------GRWQDVAKIRDLMTRRRLKKIP 443 (577)
Q Consensus 405 p~~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~m~~~g~~~~~ 443 (577)
.++..+|..|+.+|.+ + +..++|..+|++|.+.|+.|+.
T Consensus 786 ~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~ 847 (1060)
T PLN03218 786 KPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTM 847 (1060)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCH
Confidence 5567889998876432 2 1236799999999999998764
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-53 Score=461.80 Aligned_cols=482 Identities=18% Similarity=0.199 Sum_probs=412.1
Q ss_pred CChhhHHHHHHhccC---hHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHcCCChHHHHHHHhcCC----CCCcchHHHH
Q 037414 58 VDPKFFISSLLSCRN---IFQIRQVHAQIVAGG-TLTNLIVANKLLYIYALHKALTDAHALFNGMK----ERDSVSWSVM 129 (577)
Q Consensus 58 p~~~~~~~ll~a~~~---~~~a~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~----~~~~~~~~~l 129 (577)
++..++++++.++.+ +++|.++|..|.+.+ +.||..+|++++.++++.++++.|.+++..|. .||..+||.+
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 455688888887766 999999999998865 78999999999999999999999999999986 3799999999
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCH
Q 037414 130 VGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVI 209 (577)
Q Consensus 130 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 209 (577)
+..|++.|++++|.++|++|.+ ||..+|++++.+|++.|++++|.++|++|.+.|+.||..+|+.++.++++.|..
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~ 240 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcH
Confidence 9999999999999999999964 899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHH
Q 037414 210 DDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKK 289 (577)
Q Consensus 210 ~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 289 (577)
+.+.+++..+.+ .|+.||..+||+||++|+++|++++|.++|++|.++|+++||+||.+|++.|+.++
T Consensus 241 ~~~~~l~~~~~~------------~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~e 308 (697)
T PLN03081 241 RAGQQLHCCVLK------------TGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEE 308 (697)
T ss_pred HHHHHHHHHHHH------------hCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHH
Confidence 999999988766 57788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Q 037414 290 ALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMS 369 (577)
Q Consensus 290 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 369 (577)
|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+. |+.|+..+|++||++|+++|++++|.++|++|.
T Consensus 309 A~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~ 387 (697)
T PLN03081 309 ALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT-GFPLDIVANTALVDLYSKWGRMEDARNVFDRMP 387 (697)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHh-CCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999765 999999999999999999999999999999997
Q ss_pred CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCchhHHHHHHHHhccCChhHHHHHHHHHhh-CCCccCCceeE
Q 037414 370 VEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQ-PQNPGHYVLLSNVYANAGRWQDVAKIRDLMTR-RRLKKIPGWTW 447 (577)
Q Consensus 370 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~g~~~~~~~s~ 447 (577)
+||..+|++||.+|.++|+.++|.++|++|.+.+ .+|..+|..++.+|.+.|++++|.++|+.|.+ .|+.|... .|
T Consensus 388 -~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~-~y 465 (697)
T PLN03081 388 -RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAM-HY 465 (697)
T ss_pred -CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcc-ch
Confidence 6899999999999999999999999999999876 56788999999999999999999999999986 47765431 22
Q ss_pred EEECCEEEEEEecCCCCcccHHHHHHHHHHHHHHHHCCcccCCCccccccchhhhhccccccchHhHHHhccccCCCCCe
Q 037414 448 IEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTH 527 (577)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~ 527 (577)
..+ +.+....+..++++ +.+++.++.||..+|...+..+.+.+.+-.--+-....+++.|...+..
T Consensus 466 ~~l-------i~~l~r~G~~~eA~-------~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y 531 (697)
T PLN03081 466 ACM-------IELLGREGLLDEAY-------AMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNY 531 (697)
T ss_pred HhH-------HHHHHhcCCHHHHH-------HHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcch
Confidence 111 22333445555554 3345668999988776666666554443111111112245555545566
Q ss_pred EEEEecccccCCchhhHHhhhhccCceEEE-------ecCCccccccccccc
Q 037414 528 IRIMKNLRVCGDCHSFIKHVSAITRRVIIV-------RDANRFHHFEGGACS 572 (577)
Q Consensus 528 ~~~~~~l~~~~~~~~~~~~is~~~~~~~~~-------~~~~~~h~~~~g~~s 572 (577)
+.+++-...+|+..+|.++..+|..+.+.. --.+..|.|-.|..+
T Consensus 532 ~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~ 583 (697)
T PLN03081 532 VVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRL 583 (697)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCC
Confidence 667778889999999999999998886421 222455667655433
|
|
| >PF14432 DYW_deaminase: DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.9e-30 Score=207.12 Aligned_cols=106 Identities=67% Similarity=1.066 Sum_probs=96.2
Q ss_pred ceeEEEECCEEEEEEecCCCCcccHHHHHHHHHHHHHHHHCCcccCCCccccccchhhh--------hccccccchHhHH
Q 037414 444 GWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVK--------VGNLYSHSEKLAI 515 (577)
Q Consensus 444 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~--------~~~~~~~~~~la~ 515 (577)
|++|+++ |.|++||.+||+. ++..++...||.|++..+.++++++++ ...++.|||+||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 6899987 9999999999988 456677889999999988888877655 4578999999999
Q ss_pred HhccccCCCCCeEEEEecc-cccCCchhhHHhhhhccCceEEEecCCcccccc
Q 037414 516 AFGLIATPEGTHIRIMKNL-RVCGDCHSFIKHVSAITRRVIIVRDANRFHHFE 567 (577)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~is~~~~~~~~~~~~~~~h~~~ 567 (577)
+||++++ +|+||+ |+|+|||+|+|+||++++|+|+|||++|||||+
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999998 899999 999999999999999999999999999999996
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-23 Score=237.27 Aligned_cols=395 Identities=12% Similarity=0.023 Sum_probs=242.1
Q ss_pred cchhhHHHhhccCCCCCCCCCcccCccCCCCCCCCCCCChhhHHHHHHhccChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 037414 21 SSSTTAAIALEPHGHEQNPMNPRVPMQMGPDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLY 100 (577)
Q Consensus 21 ~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~a~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 100 (577)
..+..+...+...|++++|.+.|..+... .+........+..+....++++.|.+.+..+.+.+ +.+..++..+..
T Consensus 466 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 541 (899)
T TIGR02917 466 SLHNLLGAIYLGKGDLAKAREAFEKALSI---EPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAG 541 (899)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHH
Confidence 34555555566666666666666655433 11111111112222222333666666666666554 445566666666
Q ss_pred HHHcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCChHHH
Q 037414 101 IYALHKALTDAHALFNGMKE---RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMG 177 (577)
Q Consensus 101 ~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 177 (577)
.|.+.|+.++|...|+++.. .+...+..++..|.+.|++++|.++++.+.+. .+.+..+|..+...+...|++++|
T Consensus 542 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A 620 (899)
T TIGR02917 542 LYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADA-APDSPEAWLMLGRAQLAAGDLNKA 620 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 66666666666666666533 13445566666666666666776666666653 233455666666666666777777
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHH
Q 037414 178 RLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSID 257 (577)
Q Consensus 178 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~ 257 (577)
...++.+.+.. +.+...+..+..+|.+.|++++|..+|+++.+.+ +.+...+..++..+.+.|+++
T Consensus 621 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------------~~~~~~~~~l~~~~~~~~~~~ 686 (899)
T TIGR02917 621 VSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-------------PDNTEAQIGLAQLLLAAKRTE 686 (899)
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------------CCCHHHHHHHHHHHHHcCCHH
Confidence 77776666553 3455566666666767777777777666654322 224556666777777777777
Q ss_pred HHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhH
Q 037414 258 SAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWD 334 (577)
Q Consensus 258 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 334 (577)
+|..+++.+.+ .+...+..+...+...|++++|.+.|+++...+ |+..++..+..++.+.|+.++|.+.++.+.+
T Consensus 687 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 764 (899)
T TIGR02917 687 SAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLK 764 (899)
T ss_pred HHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77777777654 344556666677777777777777777776643 3445555666677777777777777777664
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHH
Q 037414 335 DFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVE-KDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYV 412 (577)
Q Consensus 335 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 412 (577)
. .+.+...+..+...|.+.|++++|.+.|+++ ... ++..++..+...+...|+ ++|+..++++.+..|+++..+.
T Consensus 765 ~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~ 841 (899)
T TIGR02917 765 T--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILD 841 (899)
T ss_pred h--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHH
Confidence 3 3345666666777777777777777777666 222 345566666666666666 6677777777666666666666
Q ss_pred HHHHHHhccCChhHHHHHHHHHhhCCC
Q 037414 413 LLSNVYANAGRWQDVAKIRDLMTRRRL 439 (577)
Q Consensus 413 ~l~~~~~~~g~~~~A~~~~~~m~~~g~ 439 (577)
.+..+|...|++++|.++++++.+.+.
T Consensus 842 ~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 842 TLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 666667777777777777766666543
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-22 Score=228.27 Aligned_cols=412 Identities=11% Similarity=-0.016 Sum_probs=288.6
Q ss_pred cccchhhHHHhhccCCCCCCCCCcccCccCCCCCCCCCCCChhhHHHHHHhccChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 037414 19 FFSSSTTAAIALEPHGHEQNPMNPRVPMQMGPDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKL 98 (577)
Q Consensus 19 ~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~a~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 98 (577)
....+..+...+.+.|++++|++.|..+.... +....-...+..+....++.+.|...+..+.+.. +.+......+
T Consensus 362 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 437 (899)
T TIGR02917 362 DPAALSLLGEAYLALGDFEKAAEYLAKATELD---PENAAARTQLGISKLSQGDPSEAIADLETAAQLD-PELGRADLLL 437 (899)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC-CcchhhHHHH
Confidence 34456667777788888888888887765431 1111111112222223333666666666666554 2233444555
Q ss_pred HHHHHcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCChH
Q 037414 99 LYIYALHKALTDAHALFNGMKE---RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIV 175 (577)
Q Consensus 99 i~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 175 (577)
+..|.+.|++++|.++++.+.. .+..+|+.+...+...|++++|.+.|+++.+.. +.+...+..+...+...|+++
T Consensus 438 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~ 516 (899)
T TIGR02917 438 ILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPD 516 (899)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHH
Confidence 6666666666666666666543 244556666666666666666666666666532 123344555555566666666
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCCh---hHHHHHHhc------------------C
Q 037414 176 MGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDL---VTWTVMIGA------------------N 234 (577)
Q Consensus 176 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~~~~~~i~~------------------~ 234 (577)
+|.+.++.+.+.+ +.+..++..+...|.+.|+.++|...|+++.+.++ ..+..+... .
T Consensus 517 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 595 (899)
T TIGR02917 517 DAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAAD 595 (899)
T ss_pred HHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6666666666553 34555666666666666666666666665533221 111111110 2
Q ss_pred CCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHH
Q 037414 235 KFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVS 311 (577)
Q Consensus 235 g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 311 (577)
..+.+..++..+..+|.+.|++++|...|+++.+ .+...|..+...|.+.|++++|...|+++.+.. +.+..++..
T Consensus 596 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 674 (899)
T TIGR02917 596 AAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIG 674 (899)
T ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHH
Confidence 3345677888999999999999999999998764 356678888999999999999999999988752 445678888
Q ss_pred HHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHHhcCCH
Q 037414 312 LLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEKDEGLWGALLGACRIHKNV 390 (577)
Q Consensus 312 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~ 390 (577)
+...+...|++++|.++++.+.+. .+++...+..+...+.+.|++++|.+.|+++ ...|+..++..+...+...|+.
T Consensus 675 l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 752 (899)
T TIGR02917 675 LAQLLLAAKRTESAKKIAKSLQKQ--HPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNT 752 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--CcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCH
Confidence 889999999999999999999654 3456777888889999999999999999987 5567778888899999999999
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCCC
Q 037414 391 DLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRL 439 (577)
Q Consensus 391 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 439 (577)
++|...++++++..|+++..+..++..|...|++++|.+.++++.+...
T Consensus 753 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 801 (899)
T TIGR02917 753 AEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP 801 (899)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999987653
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-19 Score=184.92 Aligned_cols=296 Identities=14% Similarity=0.118 Sum_probs=227.1
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCc---HHHHHHHHHHHHhCC
Q 037414 131 GGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDID---QFVCAALVDMYAKCK 207 (577)
Q Consensus 131 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g 207 (577)
..+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+++.+..++ ..++..+...|.+.|
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 34566777888888888887752 12344677777777788888888888887776532221 246777888888888
Q ss_pred CHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccCC--C------hhhHHHHHH
Q 037414 208 VIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQK--N------VISWSAMIA 279 (577)
Q Consensus 208 ~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~--~------~~~~~~li~ 279 (577)
++++|..+|+++.+.+ +.+..+++.++..|.+.|++++|.+.|+.+.+. + ...|..+..
T Consensus 122 ~~~~A~~~~~~~l~~~-------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~ 188 (389)
T PRK11788 122 LLDRAEELFLQLVDEG-------------DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQ 188 (389)
T ss_pred CHHHHHHHHHHHHcCC-------------cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 8888888888886532 224567778888888888888888888887642 1 123556777
Q ss_pred HHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC--HHHHHHHHHHHHHcCC
Q 037414 280 AYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD--VKHYTCMVDLLGRAGR 357 (577)
Q Consensus 280 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~ 357 (577)
.+.+.|++++|...|+++.+.. +.+...+..+...+.+.|++++|.++++++.+. .|+ ...++.++.+|.+.|+
T Consensus 189 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~ 264 (389)
T PRK11788 189 QALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGD 264 (389)
T ss_pred HHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCC
Confidence 8888999999999999988753 234556777888899999999999999998743 343 4567888999999999
Q ss_pred HHHHHHHHHhC-CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhc---cCChhHHHHHHHH
Q 037414 358 LDEALKLIESM-SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYAN---AGRWQDVAKIRDL 433 (577)
Q Consensus 358 ~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~ 433 (577)
+++|.+.++++ ...|+...+..+...+.+.|++++|..+++++++..|++. .+..++..+.. .|+.+++..++++
T Consensus 265 ~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~ 343 (389)
T PRK11788 265 EAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRD 343 (389)
T ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHH
Confidence 99999999987 4567777778888899999999999999999999988875 56666665553 5689999999999
Q ss_pred HhhCCCccCCce
Q 037414 434 MTRRRLKKIPGW 445 (577)
Q Consensus 434 m~~~g~~~~~~~ 445 (577)
|.+++++++|.+
T Consensus 344 ~~~~~~~~~p~~ 355 (389)
T PRK11788 344 LVGEQLKRKPRY 355 (389)
T ss_pred HHHHHHhCCCCE
Confidence 999999888863
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-19 Score=184.39 Aligned_cols=293 Identities=12% Similarity=0.058 Sum_probs=238.9
Q ss_pred HHHHcCCChHHHHHHHhcCCCC---CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC---cchHHHHHHHHhcCCC
Q 037414 100 YIYALHKALTDAHALFNGMKER---DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLD---SYTLPFVIRACRDRKD 173 (577)
Q Consensus 100 ~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~~~ 173 (577)
..+...|++++|...|.++.+. +..+|..+...+.+.|++++|..+++.+...+..++ ..++..+...+...|+
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3456789999999999998753 455788899999999999999999999987532222 2457788888999999
Q ss_pred hHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhc
Q 037414 174 IVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKC 253 (577)
Q Consensus 174 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~ 253 (577)
++.|..++.++.+.. +.+..+++.++.+|.+.|++++|.+.|+.+.+.+...... .....+..+...+.+.
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--------~~~~~~~~la~~~~~~ 193 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRV--------EIAHFYCELAQQALAR 193 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchH--------HHHHHHHHHHHHHHhC
Confidence 999999999998763 5678899999999999999999999999986543221000 0123456788889999
Q ss_pred CCHHHHHHHHHhccC--C-ChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 037414 254 GSIDSAREIFDRMRQ--K-NVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFS 330 (577)
Q Consensus 254 g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 330 (577)
|++++|...|+++.+ | +...+..+...|.+.|++++|.++|+++...+......++..+..+|...|++++|...++
T Consensus 194 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 273 (389)
T PRK11788 194 GDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLR 273 (389)
T ss_pred CCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999864 3 4557888899999999999999999999876433334567889999999999999999999
Q ss_pred HhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHHh---cCCHHHHHHHHHHHHhcC
Q 037414 331 SMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEKDEGLWGALLGACRI---HKNVDLAEMAAKSLLERQ 404 (577)
Q Consensus 331 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~ 404 (577)
.+.+ ..|+...+..++..|.+.|++++|.++++++ ...|+...+..++..+.. .|+.+++..+++++++..
T Consensus 274 ~~~~---~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~ 348 (389)
T PRK11788 274 RALE---EYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQ 348 (389)
T ss_pred HHHH---hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHH
Confidence 9974 3577777788999999999999999999876 667999999988887664 568899999999888754
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3e-19 Score=174.73 Aligned_cols=390 Identities=13% Similarity=0.112 Sum_probs=291.4
Q ss_pred eecccccccccchhhHHHhhccCCCCCCCCCcccCccCCCCCCCCCCCChhhHHHHHHhccChHHHHHHHHHHHHcCCCC
Q 037414 11 VSISAKLRFFSSSTTAAIALEPHGHEQNPMNPRVPMQMGPDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLT 90 (577)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~a~~~~~~a~~~~~~~~~~g~~~ 90 (577)
..+.-.+.+...+..+...+-..|.+++|+++++.|.+.. +...--.....+.+..-++.+.|.+.|...++. .|
T Consensus 107 ~a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~---p~fida~inla~al~~~~~~~~a~~~~~~alql--nP 181 (966)
T KOG4626|consen 107 LAIRKNPQGAEAYSNLANILKERGQLQDALALYRAAIELK---PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NP 181 (966)
T ss_pred hhhhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC---chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Cc
Confidence 3344445566666777777788888888888888887651 111111222344444445577777777777664 34
Q ss_pred CHHHH-HHHHHHHHcCCChHHHHHHHhcCCC--C-CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-cchHHHHH
Q 037414 91 NLIVA-NKLLYIYALHKALTDAHALFNGMKE--R-DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLD-SYTLPFVI 165 (577)
Q Consensus 91 ~~~~~-~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll 165 (577)
+.+.. +.+-..+-..|++++|...+.+..+ | =.+.|+.|...+-..|+...|+..|++... +.|+ ...|..|-
T Consensus 182 ~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLG 259 (966)
T KOG4626|consen 182 DLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLG 259 (966)
T ss_pred chhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHH
Confidence 44433 3344444456888888877766543 3 355788888888888888888888888876 4554 45677888
Q ss_pred HHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHH
Q 037414 166 RACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTA 245 (577)
Q Consensus 166 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~ 245 (577)
..|...+.+++|...+.+..... +....++..|...|...|.+|-|...+++..+.++ .-...|+.
T Consensus 260 nV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P-------------~F~~Ay~N 325 (966)
T KOG4626|consen 260 NVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQP-------------NFPDAYNN 325 (966)
T ss_pred HHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCC-------------CchHHHhH
Confidence 88888888888888888777653 44567777888888888999999888888766432 12668889
Q ss_pred HHHHHHhcCCHHHHHHHHHhccC--C-ChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHhccCC
Q 037414 246 VIDMYAKCGSIDSAREIFDRMRQ--K-NVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPN-RITFVSLLYACSHTGL 321 (577)
Q Consensus 246 Li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~ 321 (577)
|..++-..|++.+|.+.|.+... | -..+.+.+...|...|.+++|..+|....+ +.|. ...++.|...|-+.|+
T Consensus 326 lanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgn 403 (966)
T KOG4626|consen 326 LANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGN 403 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhccc
Confidence 99999999999999999998765 3 345778889999999999999999988876 4454 3567888888999999
Q ss_pred HHHHHHHHHHhhHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHh-HHHHHHHHHHhcCCHHHHHHHHH
Q 037414 322 VEEGLRLFSSMWDDFAVRPD-VKHYTCMVDLLGRAGRLDEALKLIESM-SVEKDEG-LWGALLGACRIHKNVDLAEMAAK 398 (577)
Q Consensus 322 ~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~ 398 (577)
+++|...+++.+ .++|+ ...|+-+...|-..|+.+.|.+.+.+. .+.|.-. ..+.|...+...|++.+|+..++
T Consensus 404 l~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~ 480 (966)
T KOG4626|consen 404 LDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYR 480 (966)
T ss_pred HHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHH
Confidence 999999999887 57887 578888888899999999999988876 6667543 78888899999999999999999
Q ss_pred HHHhcCCCCchhHHHHHHHHhccCChhH
Q 037414 399 SLLERQPQNPGHYVLLSNVYANAGRWQD 426 (577)
Q Consensus 399 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 426 (577)
..+++.|+.+.+|..++-+..--.+|.+
T Consensus 481 ~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 481 TALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 9999999999999888877666555555
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2e-18 Score=169.11 Aligned_cols=405 Identities=14% Similarity=0.102 Sum_probs=287.5
Q ss_pred hhhHHHhhccCCCCCCCCCcccCccCCCCCCCCCCCChhhHHHHHHhccChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 037414 23 STTAAIALEPHGHEQNPMNPRVPMQMGPDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIY 102 (577)
Q Consensus 23 ~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~a~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 102 (577)
...+.+-..+.|++++|++.-...... .+...+..-...+..-.+.+.+...+--...++.. +.-..+|+.+.+.+
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~---d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ 126 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQE---DPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANIL 126 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhcc---CCCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHH
Confidence 346777888999999998876655544 22333333334444444444333333222222222 44566788888888
Q ss_pred HcCCChHHHHHHHhcCCCC---CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHH-HHhcCCChHHHH
Q 037414 103 ALHKALTDAHALFNGMKER---DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIR-ACRDRKDIVMGR 178 (577)
Q Consensus 103 ~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~-~~~~~~~~~~a~ 178 (577)
-..|++++|+.+++.+.+. .+..|..+..++...|+.+.|.+.|.+.++ +.|+.....+-+. ..-..|++.+|.
T Consensus 127 kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~ 204 (966)
T KOG4626|consen 127 KERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAK 204 (966)
T ss_pred HHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhH
Confidence 8888888888888877653 556788888888888888888888877776 3455443322222 233456666666
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHH--------------------hcCCCCc
Q 037414 179 LIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI--------------------GANKFLL 238 (577)
Q Consensus 179 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i--------------------~~~g~~~ 238 (577)
..+.+.++.. +-=..+|+.|...+-..|++..|...|++...-|+---.+-+ .+....|
T Consensus 205 ~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrp 283 (966)
T KOG4626|consen 205 ACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRP 283 (966)
T ss_pred HHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCC
Confidence 6666665542 112345666666666666666666666665443221100000 0012222
Q ss_pred -chhhHHHHHHHHHhcCCHHHHHHHHHhccC--CC-hhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCC-HHHHHHHH
Q 037414 239 -DVILGTAVIDMYAKCGSIDSAREIFDRMRQ--KN-VISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPN-RITFVSLL 313 (577)
Q Consensus 239 -~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll 313 (577)
...++..|...|-..|.+|-|...|++..+ |+ ...|+.|..++-..|+..+|.+.|.+.... .|+ ....+.|.
T Consensus 284 n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLg 361 (966)
T KOG4626|consen 284 NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLG 361 (966)
T ss_pred cchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHHH
Confidence 355666666777788888888888888764 33 468999999999999999999999998875 444 45778899
Q ss_pred HHHhccCCHHHHHHHHHHhhHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHh-HHHHHHHHHHhcCCH
Q 037414 314 YACSHTGLVEEGLRLFSSMWDDFAVRPD-VKHYTCMVDLLGRAGRLDEALKLIESM-SVEKDEG-LWGALLGACRIHKNV 390 (577)
Q Consensus 314 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~~ 390 (577)
..+...|.+++|..+|.... .+.|. ....+-|...|-+.|++++|...+++. .++|+.. .++.+...|...|+.
T Consensus 362 ni~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v 438 (966)
T KOG4626|consen 362 NIYREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDV 438 (966)
T ss_pred HHHHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhH
Confidence 99999999999999999887 35565 567888999999999999999999887 7888765 899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCCC
Q 037414 391 DLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRL 439 (577)
Q Consensus 391 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 439 (577)
+.|.+.+.+++..+|.-..++..|..+|-..|+..+|.+-+++..+...
T Consensus 439 ~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 439 SAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP 487 (966)
T ss_pred HHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence 9999999999999999999999999999999999999999998876543
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.2e-16 Score=167.89 Aligned_cols=347 Identities=11% Similarity=0.034 Sum_probs=269.2
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHhcCCCC---CcchHHHHHHHHHhCCChhHHHHHHHHH
Q 037414 73 IFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKER---DSVSWSVMVGGFSKVADFINCFETFREF 149 (577)
Q Consensus 73 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m 149 (577)
++.|...+...++. .|+...|..+...|.+.|++++|+..++...+. +...|..+..+|...|++++|+..|...
T Consensus 143 ~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~ 220 (615)
T TIGR00990 143 FNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTAS 220 (615)
T ss_pred HHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88899999988764 567888999999999999999999999887653 5567888999999999999998766443
Q ss_pred HHCC----------------------------CCC-CcchHHHHHHH---------------------------------
Q 037414 150 IRCG----------------------------MQL-DSYTLPFVIRA--------------------------------- 167 (577)
Q Consensus 150 ~~~g----------------------------~~p-~~~t~~~ll~~--------------------------------- 167 (577)
...+ ..| +...+..+...
T Consensus 221 ~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 300 (615)
T TIGR00990 221 CIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLK 300 (615)
T ss_pred HHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHH
Confidence 2211 011 11111111000
Q ss_pred ---HhcCCChHHHHHHHHHHHHcC-C-CCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhh
Q 037414 168 ---CRDRKDIVMGRLIHDIVLKSG-L-DIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVIL 242 (577)
Q Consensus 168 ---~~~~~~~~~a~~~~~~~~~~g-~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~ 242 (577)
....+++++|.+.++..++.+ . +.....++.+...|...|++++|...|++..+.++. +...
T Consensus 301 ~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-------------~~~~ 367 (615)
T TIGR00990 301 SPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-------------VTQS 367 (615)
T ss_pred HHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-------------cHHH
Confidence 011256778889999888765 2 334567888889999999999999999988764321 3557
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcc
Q 037414 243 GTAVIDMYAKCGSIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHT 319 (577)
Q Consensus 243 ~~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 319 (577)
|..+...|...|++++|...|++..+ .+...|..+...+...|++++|+..|++..+.. +.+...+..+...+.+.
T Consensus 368 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~ 446 (615)
T TIGR00990 368 YIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKE 446 (615)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHC
Confidence 77889999999999999999998764 456789999999999999999999999998753 33456777788899999
Q ss_pred CCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-h-------HHHHHHHHHHhcCCH
Q 037414 320 GLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEKDE-G-------LWGALLGACRIHKNV 390 (577)
Q Consensus 320 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~-------~~~~ll~~~~~~g~~ 390 (577)
|++++|...|+..++. .+.+...++.+...|...|++++|.+.|++. .+.|+. . .++..+..+...|++
T Consensus 447 g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~ 524 (615)
T TIGR00990 447 GSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDF 524 (615)
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhH
Confidence 9999999999999753 3334778889999999999999999999986 444431 1 122222334456999
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhC
Q 037414 391 DLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRR 437 (577)
Q Consensus 391 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 437 (577)
++|..+++++++.+|++...+..++.+|.+.|++++|.+.+++..+.
T Consensus 525 ~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 525 IEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 99999999999999999889999999999999999999999987653
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.4e-15 Score=162.97 Aligned_cols=370 Identities=9% Similarity=0.024 Sum_probs=244.7
Q ss_pred HHHHHHhccChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHhcCCC--C-CcchHHHHHHHHHhCCCh
Q 037414 63 FISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKE--R-DSVSWSVMVGGFSKVADF 139 (577)
Q Consensus 63 ~~~ll~a~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~ 139 (577)
|..+..-.++.+.|.+++....... +.+...+..+...+.+.|++++|..+|++..+ | +...+..+...+...|++
T Consensus 21 ~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~ 99 (765)
T PRK10049 21 WLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQY 99 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence 4555555555666666666665422 34444566666666666666666666666422 2 344455666666666666
Q ss_pred hHHHHHHHHHHHCCCCC-CcchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhh
Q 037414 140 INCFETFREFIRCGMQL-DSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQ 218 (577)
Q Consensus 140 ~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 218 (577)
++|+..+++..+. .| +.. +..+..++...|+.++|...++++++.. |.+..++..+..++...|..++|.+.++.
T Consensus 100 ~eA~~~l~~~l~~--~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~ 175 (765)
T PRK10049 100 DEALVKAKQLVSG--APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDD 175 (765)
T ss_pred HHHHHHHHHHHHh--CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHh
Confidence 6666666666654 23 233 5555555666666666666666666653 33444555566666666666666666655
Q ss_pred CCCCChhH------------------------------------HHHHHhcCCCCcchh-----hHHHHHHHHHhcCCHH
Q 037414 219 MPTRDLVT------------------------------------WTVMIGANKFLLDVI-----LGTAVIDMYAKCGSID 257 (577)
Q Consensus 219 m~~~~~~~------------------------------------~~~~i~~~g~~~~~~-----~~~~Li~~~~~~g~~~ 257 (577)
... ++.. +..++......|+.. .....+..+...|+++
T Consensus 176 ~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~ 254 (765)
T PRK10049 176 ANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYK 254 (765)
T ss_pred CCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHH
Confidence 443 1000 000000001112111 1111123445779999
Q ss_pred HHHHHHHhccCCC--hh--hHHHHHHHHHHcCChHHHHHHHHHhhhCCCCC---CHHHHHHHHHHHhccCCHHHHHHHHH
Q 037414 258 SAREIFDRMRQKN--VI--SWSAMIAAYGYHGQGKKALDLFPMMLSSRVLP---NRITFVSLLYACSHTGLVEEGLRLFS 330 (577)
Q Consensus 258 ~A~~~~~~~~~~~--~~--~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~ 330 (577)
+|...|+.+.+.+ .. .-..+...|...|++++|+..|+++.+..... .......+..++...|++++|.++++
T Consensus 255 eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~ 334 (765)
T PRK10049 255 DVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTA 334 (765)
T ss_pred HHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 9999999998632 11 12225778999999999999999987643211 12445666778899999999999999
Q ss_pred HhhHhcC----------CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHH
Q 037414 331 SMWDDFA----------VRPD---VKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEM 395 (577)
Q Consensus 331 ~m~~~~~----------~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~ 395 (577)
.+.+... -.|+ ...+..+...+...|++++|++.++++ ...| +...+..+...+...|+.++|+.
T Consensus 335 ~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~ 414 (765)
T PRK10049 335 HTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAEN 414 (765)
T ss_pred HHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 9975311 1122 234566778899999999999999997 3345 56688899999999999999999
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCC
Q 037414 396 AAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 396 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
.++++++.+|+++..+..++..+...|++++|.++++.+.+..
T Consensus 415 ~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 415 ELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred HHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999998654
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3e-16 Score=168.61 Aligned_cols=325 Identities=10% Similarity=-0.018 Sum_probs=228.3
Q ss_pred HHHHHHhccChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHhcCCC--C-CcchHHHHHHHHHhCCCh
Q 037414 63 FISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKE--R-DSVSWSVMVGGFSKVADF 139 (577)
Q Consensus 63 ~~~ll~a~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~ 139 (577)
+..-+..-+++..|..++..++..... +......+.......|++++|...|+++.. | +...|..+...+.+.|++
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~ 126 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQY 126 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH
Confidence 333333344478888888887776533 344444455566668888888888888754 3 455677778888888888
Q ss_pred hHHHHHHHHHHHCCCCC-CcchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhh
Q 037414 140 INCFETFREFIRCGMQL-DSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQ 218 (577)
Q Consensus 140 ~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 218 (577)
++|++.|++..+. .| +...+..+...+...|+.++|...+..+.... +.+...+..+ ..+...|++++|...+++
T Consensus 127 ~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~ 202 (656)
T PRK15174 127 ATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLARA 202 (656)
T ss_pred HHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHH
Confidence 8888888888774 44 35566777777888888888888888776654 2233333333 347778888888888887
Q ss_pred CCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHH----HH
Q 037414 219 MPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKK----AL 291 (577)
Q Consensus 219 m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~----A~ 291 (577)
+.+.+. .++......+...+.+.|++++|...|++..+ .+...+..+...|.+.|++++ |+
T Consensus 203 ~l~~~~------------~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~ 270 (656)
T PRK15174 203 LLPFFA------------LERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAA 270 (656)
T ss_pred HHhcCC------------CcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHH
Confidence 765321 12334445566778888888888888887764 345667778888888888875 78
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhC-C
Q 037414 292 DLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD-VKHYTCMVDLLGRAGRLDEALKLIESM-S 369 (577)
Q Consensus 292 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~ 369 (577)
..|++..+.. +.+...+..+...+...|++++|...++..++. .|+ ...+..+...|.+.|++++|.+.++++ .
T Consensus 271 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l---~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~ 346 (656)
T PRK15174 271 EHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT---HPDLPYVRAMYARALRQVGQYTAASDEFVQLAR 346 (656)
T ss_pred HHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8888887652 234557777888888888888888888888643 343 455666778888888888888888877 3
Q ss_pred CCCCHhH-HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 037414 370 VEKDEGL-WGALLGACRIHKNVDLAEMAAKSLLERQPQNP 408 (577)
Q Consensus 370 ~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 408 (577)
..|+... +..+..++...|+.++|...++++++..|++.
T Consensus 347 ~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 347 EKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred hCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 4565443 33345667888888888888888888887753
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.9e-16 Score=180.12 Aligned_cols=355 Identities=12% Similarity=0.054 Sum_probs=230.5
Q ss_pred hccChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHhcCCC--CCc---chHHHH------------HH
Q 037414 69 SCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKE--RDS---VSWSVM------------VG 131 (577)
Q Consensus 69 a~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~---~~~~~l------------i~ 131 (577)
..++++.|...+...++.. +.+..++..|...|.+.|++++|+..|++..+ |+. ..|..+ ..
T Consensus 281 ~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~ 359 (1157)
T PRK11447 281 DSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGD 359 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHH
Confidence 3444888999999888765 55788888899999999999999999988754 221 123222 33
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHH
Q 037414 132 GFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDD 211 (577)
Q Consensus 132 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 211 (577)
.+.+.|++++|++.|++..+.. +.+...+..+...+...|++++|.+.++++++.. +.+...+..+...|. .++.++
T Consensus 360 ~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~ 436 (1157)
T PRK11447 360 AALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEK 436 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHH
Confidence 5678899999999999998852 2245566677788888999999999999988764 445566666777664 456788
Q ss_pred HHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC--C-ChhhHHHHHHHHHHcCChH
Q 037414 212 ARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ--K-NVISWSAMIAAYGYHGQGK 288 (577)
Q Consensus 212 A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~ 288 (577)
|...++.+............. ......+..+...+...|++++|.+.|++..+ | +...+..+...|.+.|+++
T Consensus 437 A~~~l~~l~~~~~~~~~~~~~----~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~ 512 (1157)
T PRK11447 437 ALAFIASLSASQRRSIDDIER----SLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRS 512 (1157)
T ss_pred HHHHHHhCCHHHHHHHHHHHH----HhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 888777765432111110000 00122344556666666666666666666543 2 2344555666666666666
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHH--------------------------------------------HHHHhccCCHHH
Q 037414 289 KALDLFPMMLSSRVLPNRITFVSL--------------------------------------------LYACSHTGLVEE 324 (577)
Q Consensus 289 ~A~~l~~~m~~~g~~p~~~t~~~l--------------------------------------------l~a~~~~g~~~~ 324 (577)
+|...|+++.+.. +.+...+..+ ...+...|+.++
T Consensus 513 ~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~e 591 (1157)
T PRK11447 513 QADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAE 591 (1157)
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHH
Confidence 6666666665431 1122222222 233444445555
Q ss_pred HHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037414 325 GLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLE 402 (577)
Q Consensus 325 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 402 (577)
|..+++. .+++...+..+...|.+.|++++|++.|++. ...| +...+..+...+...|+.++|+..++++.+
T Consensus 592 A~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~ 665 (1157)
T PRK11447 592 AEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPA 665 (1157)
T ss_pred HHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 5544441 1234455566777777888888888887776 3345 455777777778888888888888888777
Q ss_pred cCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCC
Q 037414 403 RQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 403 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
..|+++..+..+..++...|++++|.++++.+....
T Consensus 666 ~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 666 TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 777777777777788888888888888888776543
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.6e-16 Score=177.80 Aligned_cols=382 Identities=10% Similarity=-0.001 Sum_probs=271.4
Q ss_pred HhhccCCCCCCCCCcccCccCCCCCCCCCCC-ChhhH---HHHHHhccChHHHHHHHHHHHHcCCCC-CHHHHH------
Q 037414 28 IALEPHGHEQNPMNPRVPMQMGPDCQFTRSV-DPKFF---ISSLLSCRNIFQIRQVHAQIVAGGTLT-NLIVAN------ 96 (577)
Q Consensus 28 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p-~~~~~---~~ll~a~~~~~~a~~~~~~~~~~g~~~-~~~~~~------ 96 (577)
..+...|++++|+..|+..... .| +...+ ..++...++.++|...+...++..-.. ....+.
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~-------~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~ 349 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRA-------NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVN 349 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhh
Confidence 3466788888888888887754 22 23333 333334444888888888887754221 111121
Q ss_pred ------HHHHHHHcCCChHHHHHHHhcCCCC---CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-cchHHHH--
Q 037414 97 ------KLLYIYALHKALTDAHALFNGMKER---DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLD-SYTLPFV-- 164 (577)
Q Consensus 97 ------~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l-- 164 (577)
.+...+.+.|++++|...|+++.+. +...+..+...+...|++++|++.|++..+. .|+ ...+..+
T Consensus 350 ~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~--~p~~~~a~~~L~~ 427 (1157)
T PRK11447 350 RYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRM--DPGNTNAVRGLAN 427 (1157)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 2234566788888888888877542 5556777888888888899998888888764 333 2222222
Q ss_pred ----------------------------------------HHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 037414 165 ----------------------------------------IRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYA 204 (577)
Q Consensus 165 ----------------------------------------l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 204 (577)
...+...|++++|.+.+++.++.. +.+..++..+...|.
T Consensus 428 l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~ 506 (1157)
T PRK11447 428 LYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLR 506 (1157)
T ss_pred HHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 223445678888888888877764 445667777888888
Q ss_pred hCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccCC----Ch---------
Q 037414 205 KCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQK----NV--------- 271 (577)
Q Consensus 205 ~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~----~~--------- 271 (577)
+.|++++|...|+++.+.++ .+...+..+...+.+.|+.++|...++.+... +.
T Consensus 507 ~~G~~~~A~~~l~~al~~~P-------------~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~ 573 (1157)
T PRK11447 507 QAGQRSQADALMRRLAQQKP-------------NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQS 573 (1157)
T ss_pred HcCCHHHHHHHHHHHHHcCC-------------CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhh
Confidence 88888888888887654221 13344445555667788888888888887532 11
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHH
Q 037414 272 ISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDL 351 (577)
Q Consensus 272 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 351 (577)
..+..+...+...|+.++|.++++. .+++...+..+...+.+.|+.++|...|+..++. -+.+...+..+...
T Consensus 574 ~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~ 646 (1157)
T PRK11447 574 DQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEV 646 (1157)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 1123456678889999999998872 2445556777888999999999999999999853 23357888899999
Q ss_pred HHHcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc------hhHHHHHHHHhccCC
Q 037414 352 LGRAGRLDEALKLIESM-SVEKD-EGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNP------GHYVLLSNVYANAGR 423 (577)
Q Consensus 352 ~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~ 423 (577)
|...|++++|++.++.. ...|+ ...+..+..++...|++++|.++++++++..|+++ ..+..+...+...|+
T Consensus 647 ~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~ 726 (1157)
T PRK11447 647 DIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQ 726 (1157)
T ss_pred HHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCC
Confidence 99999999999999987 34454 45677788889999999999999999998876544 356667899999999
Q ss_pred hhHHHHHHHHHhh-CCC
Q 037414 424 WQDVAKIRDLMTR-RRL 439 (577)
Q Consensus 424 ~~~A~~~~~~m~~-~g~ 439 (577)
+++|.+.++.... .|+
T Consensus 727 ~~~A~~~y~~Al~~~~~ 743 (1157)
T PRK11447 727 PQQALETYKDAMVASGI 743 (1157)
T ss_pred HHHHHHHHHHHHhhcCC
Confidence 9999999987753 344
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-15 Score=163.87 Aligned_cols=321 Identities=10% Similarity=-0.005 Sum_probs=229.3
Q ss_pred HHHHHHHcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CcchHHHHHHHHhcCC
Q 037414 97 KLLYIYALHKALTDAHALFNGMKE---RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQL-DSYTLPFVIRACRDRK 172 (577)
Q Consensus 97 ~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~ 172 (577)
.++..+.+.|++++|..+++.... .+...+..++.+....|++++|++.|+++... .| +...+..+...+...|
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~--~P~~~~a~~~la~~l~~~g 124 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAV--NVCQPEDVLLVASVLLKSK 124 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcC
Confidence 345566678888888888777643 24445556666777788888888888888874 44 4455666777778888
Q ss_pred ChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHh
Q 037414 173 DIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAK 252 (577)
Q Consensus 173 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~ 252 (577)
++++|...++++++.. +.+...+..+...|...|++++|...++.+...++ .+...+..+ ..+..
T Consensus 125 ~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P-------------~~~~a~~~~-~~l~~ 189 (656)
T PRK15174 125 QYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP-------------PRGDMIATC-LSFLN 189 (656)
T ss_pred CHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-------------CCHHHHHHH-HHHHH
Confidence 8888888888887763 44567777888888888888888888876643211 122223223 23677
Q ss_pred cCCHHHHHHHHHhccCC----ChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHH----
Q 037414 253 CGSIDSAREIFDRMRQK----NVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEE---- 324 (577)
Q Consensus 253 ~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~---- 324 (577)
.|++++|...++.+.+. +...+..+...+.+.|++++|+..|+++.+.. +.+...+..+..++...|++++
T Consensus 190 ~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~ 268 (656)
T PRK15174 190 KSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQ 268 (656)
T ss_pred cCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHH
Confidence 88888888888876542 22334445667778888888888888887653 3345566677778888888875
Q ss_pred HHHHHHHhhHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037414 325 GLRLFSSMWDDFAVRP-DVKHYTCMVDLLGRAGRLDEALKLIESM-SVEKD-EGLWGALLGACRIHKNVDLAEMAAKSLL 401 (577)
Q Consensus 325 a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 401 (577)
|...++..++ +.| +...+..+...+.+.|++++|...+++. ...|+ ...+..+...+...|++++|...++++.
T Consensus 269 A~~~~~~Al~---l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al 345 (656)
T PRK15174 269 AAEHWRHALQ---FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLA 345 (656)
T ss_pred HHHHHHHHHh---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 7888888764 334 4567778888888888888888888876 34454 4466677777888888888888888888
Q ss_pred hcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCC
Q 037414 402 ERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 402 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
+.+|.++..+..+..++...|++++|.+.+++..+..
T Consensus 346 ~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 346 REKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 8888876666666777888888888888888776553
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.5e-15 Score=165.22 Aligned_cols=398 Identities=10% Similarity=-0.017 Sum_probs=248.8
Q ss_pred ccchhhHHHhhccCCCCCCCCCcccCccCCCCCCCCCCCChhhHHHHHHhccChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 037414 20 FSSSTTAAIALEPHGHEQNPMNPRVPMQMGPDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLL 99 (577)
Q Consensus 20 ~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~a~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 99 (577)
......+...|.+.|+.++|+...+..... .|+...|..++....+...|..+++.+.+.. +.+..++..+.
T Consensus 78 ~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l-------dP~n~~~~~~La~i~~~~kA~~~ye~l~~~~-P~n~~~~~~la 149 (987)
T PRK09782 78 IPLTLYLAEAYRHFGHDDRARLLLEDQLKR-------HPGDARLERSLAAIPVEVKSVTTVEELLAQQ-KACDAVPTLRC 149 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-------CcccHHHHHHHHHhccChhHHHHHHHHHHhC-CCChhHHHHHH
Confidence 334466777778888888888887777644 4555555555555555777778888887765 45566666666
Q ss_pred HH--------HHcCCChHHHHHHHhcCCCCC--cchHHH-HHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHH
Q 037414 100 YI--------YALHKALTDAHALFNGMKERD--SVSWSV-MVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRAC 168 (577)
Q Consensus 100 ~~--------~~~~g~~~~A~~~f~~m~~~~--~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 168 (577)
.. |.+.++..+|++ .+...++ ...... +...|.+.|++++|++++.++.+.+.. +..-...|-.+|
T Consensus 150 ~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay 226 (987)
T PRK09782 150 RSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVL 226 (987)
T ss_pred HHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHH
Confidence 65 777666666666 3333333 333333 378899999999999999999987533 333355566666
Q ss_pred hc-CCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCC-----CChhHHHHHHhc---------
Q 037414 169 RD-RKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPT-----RDLVTWTVMIGA--------- 233 (577)
Q Consensus 169 ~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~~i~~--------- 233 (577)
.. .++ +.+..++.. .+..+..+...+++.|.+.|+.++|.+++++++. ++..+|--.+..
T Consensus 227 ~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~ 301 (987)
T PRK09782 227 LAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQAL 301 (987)
T ss_pred HHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhc
Confidence 66 355 666666443 3346788899999999999999999999998863 222333222221
Q ss_pred --------------------------------------------------------------------------------
Q 037414 234 -------------------------------------------------------------------------------- 233 (577)
Q Consensus 234 -------------------------------------------------------------------------------- 233 (577)
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q 381 (987)
T PRK09782 302 ANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQ 381 (987)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHH
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 037414 234 -------------------------------------------------------------------------------- 233 (577)
Q Consensus 234 -------------------------------------------------------------------------------- 233 (577)
T Consensus 382 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 461 (987)
T PRK09782 382 LTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNC 461 (987)
T ss_pred HHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhH
Confidence
Q ss_pred ------CCC-Cc--chhhHHHHHHHHHhcCCHHHHHHHHHhccC--CC--------------------------------
Q 037414 234 ------NKF-LL--DVILGTAVIDMYAKCGSIDSAREIFDRMRQ--KN-------------------------------- 270 (577)
Q Consensus 234 ------~g~-~~--~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~--~~-------------------------------- 270 (577)
.+. ++ +...+..+..++.. |+.++|...|.+... |+
T Consensus 462 ~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p 540 (987)
T PRK09782 462 PAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLHDM 540 (987)
T ss_pred HHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC
Confidence 111 22 34445544444443 444445554443322 22
Q ss_pred -hhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHH
Q 037414 271 -VISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMV 349 (577)
Q Consensus 271 -~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 349 (577)
...+..+...+.+.|+.++|...+++..+.. +++...+..+.......|++++|...++..+ .+.|+...|..+.
T Consensus 541 ~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL---~l~P~~~a~~~LA 616 (987)
T PRK09782 541 SNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSL---NIAPSANAYVARA 616 (987)
T ss_pred CcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHH---HhCCCHHHHHHHH
Confidence 2223333344444455555555554444432 1111122222223334466666666666665 2456667777777
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHH
Q 037414 350 DLLGRAGRLDEALKLIESM-SVEKD-EGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDV 427 (577)
Q Consensus 350 ~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 427 (577)
..+.+.|+.++|+..+++. ...|+ ...+..+...+...|+.++|+..++++++..|.++..+..+..+|...|++++|
T Consensus 617 ~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA 696 (987)
T PRK09782 617 TIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAAT 696 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 7777888888888877776 44554 446666666777888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhhCC
Q 037414 428 AKIRDLMTRRR 438 (577)
Q Consensus 428 ~~~~~~m~~~g 438 (577)
...+++..+..
T Consensus 697 ~~~l~~Al~l~ 707 (987)
T PRK09782 697 QHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHhcC
Confidence 88887776543
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.5e-14 Score=156.01 Aligned_cols=413 Identities=11% Similarity=0.031 Sum_probs=300.6
Q ss_pred cccchhhHHHhhccCCCCCCCCCcccCccCCCCCCCCCCCChhhHHHHHHhccChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 037414 19 FFSSSTTAAIALEPHGHEQNPMNPRVPMQMGPDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKL 98 (577)
Q Consensus 19 ~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~a~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 98 (577)
.+...-.-+....+.|+++.|++.|+..... .|...|-..-+..++...++.+.|...++..+... ..+.....++
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~---~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llal 108 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKA---GPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASA 108 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhh---CccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHH
Confidence 3333334455678999999999999998765 22222223344445555566888988888887211 2233344444
Q ss_pred HHHHHcCCChHHHHHHHhcCCCC---CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCChH
Q 037414 99 LYIYALHKALTDAHALFNGMKER---DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIV 175 (577)
Q Consensus 99 i~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 175 (577)
...|...|++++|.++|+++.+. +...+..++..+...++.++|++.++++... .|+...+..++..+...++..
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~ 186 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNY 186 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHH
Confidence 66888889999999999998763 4556777788899999999999999998874 566666644444444456666
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCC---Ch------------h---------------
Q 037414 176 MGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR---DL------------V--------------- 225 (577)
Q Consensus 176 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~------------~--------------- 225 (577)
+|.+.++++++.. |.+...+..++....+.|-...|.++..+-+.- .. +
T Consensus 187 ~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~ 265 (822)
T PRK14574 187 DALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFD 265 (822)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHH
Confidence 6999999999885 567888888999999999988888887765520 00 0
Q ss_pred -------HHHHHHhc-CCCCcchhh-HHH---HHHHHHhcCCHHHHHHHHHhccCC----ChhhHHHHHHHHHHcCChHH
Q 037414 226 -------TWTVMIGA-NKFLLDVIL-GTA---VIDMYAKCGSIDSAREIFDRMRQK----NVISWSAMIAAYGYHGQGKK 289 (577)
Q Consensus 226 -------~~~~~i~~-~g~~~~~~~-~~~---Li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~ 289 (577)
-+..++.. ...++.... ..+ -+-++.+.|++.++.+.|+.+..+ ....--++.++|...+++++
T Consensus 266 ~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~k 345 (822)
T PRK14574 266 IADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEK 345 (822)
T ss_pred HHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHH
Confidence 00111110 122322222 222 244567889999999999999842 23455678899999999999
Q ss_pred HHHHHHHhhhCC-----CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcC----------CCCC---HHHHHHHHHH
Q 037414 290 ALDLFPMMLSSR-----VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFA----------VRPD---VKHYTCMVDL 351 (577)
Q Consensus 290 A~~l~~~m~~~g-----~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~----------~~p~---~~~~~~li~~ 351 (577)
|+.+|+++.... ..++......|.-++...+++++|..+++.+.+... -.|+ ...+..++..
T Consensus 346 A~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~ 425 (822)
T PRK14574 346 AAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQS 425 (822)
T ss_pred HHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHH
Confidence 999999987643 123344456788999999999999999999965211 0122 2445567788
Q ss_pred HHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHH
Q 037414 352 LGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAK 429 (577)
Q Consensus 352 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 429 (577)
+...|++.+|++.++++ ...| |...+..+...+...|.+.+|+..++.+...+|.+..+....+..+...|+|.+|.+
T Consensus 426 ~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~ 505 (822)
T PRK14574 426 LVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMEL 505 (822)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHH
Confidence 89999999999999998 3345 777888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCC
Q 037414 430 IRDLMTRRR 438 (577)
Q Consensus 430 ~~~~m~~~g 438 (577)
+.+.+.+..
T Consensus 506 ~~~~l~~~~ 514 (822)
T PRK14574 506 LTDDVISRS 514 (822)
T ss_pred HHHHHHhhC
Confidence 998776544
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.5e-15 Score=159.93 Aligned_cols=360 Identities=9% Similarity=-0.042 Sum_probs=271.4
Q ss_pred hhhHHHhhccCCCCCCCCCcccCccCCCCCCCCCCCChhhHHHH---HHhccChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 037414 23 STTAAIALEPHGHEQNPMNPRVPMQMGPDCQFTRSVDPKFFISS---LLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLL 99 (577)
Q Consensus 23 ~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~l---l~a~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 99 (577)
+...-..+...|++++|+..|...... .|+...|..+ ....++.+.|...+...++.. +.+...+..+.
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~-------~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a 201 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC-------KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRA 201 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc-------CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHH
Confidence 334556688899999999999998754 4555555444 333344889999999988875 55677888899
Q ss_pred HHHHcCCChHHHHHHHhcCCC---------------------------------CCcchHHHHHHHH-------------
Q 037414 100 YIYALHKALTDAHALFNGMKE---------------------------------RDSVSWSVMVGGF------------- 133 (577)
Q Consensus 100 ~~~~~~g~~~~A~~~f~~m~~---------------------------------~~~~~~~~li~~~------------- 133 (577)
.+|...|++++|..-|..... .+..++..+...+
T Consensus 202 ~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (615)
T TIGR00990 202 NAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLE 281 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhh
Confidence 999999999999765533210 0111111111100
Q ss_pred -----------------------HhCCChhHHHHHHHHHHHCC-CCC-CcchHHHHHHHHhcCCChHHHHHHHHHHHHcC
Q 037414 134 -----------------------SKVADFINCFETFREFIRCG-MQL-DSYTLPFVIRACRDRKDIVMGRLIHDIVLKSG 188 (577)
Q Consensus 134 -----------------------~~~g~~~~A~~~~~~m~~~g-~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 188 (577)
...+++++|++.|+.....+ ..| +...+..+...+...|++++|...+++.++..
T Consensus 282 ~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~ 361 (615)
T TIGR00990 282 DSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD 361 (615)
T ss_pred cccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 11257889999999998765 334 34556777777888999999999999998864
Q ss_pred CCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC
Q 037414 189 LDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ 268 (577)
Q Consensus 189 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~ 268 (577)
+.....|..+...|...|++++|...|++..+.+ +.+..++..+...|...|++++|...|++..+
T Consensus 362 -P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~ 427 (615)
T TIGR00990 362 -PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-------------SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID 427 (615)
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3446788899999999999999999999876533 23567888899999999999999999999865
Q ss_pred --C-ChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCH---
Q 037414 269 --K-NVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDV--- 342 (577)
Q Consensus 269 --~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--- 342 (577)
| +...|..+...+.+.|++++|+..|++.... .+-+...+..+...+...|++++|...|+..++ +.|+.
T Consensus 428 l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~---l~p~~~~~ 503 (615)
T TIGR00990 428 LDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE---LEKETKPM 503 (615)
T ss_pred cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh---cCCccccc
Confidence 3 4567888889999999999999999998875 233467888889999999999999999999874 33321
Q ss_pred -----HHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 037414 343 -----KHYTCMVDLLGRAGRLDEALKLIESM-SVEKDE-GLWGALLGACRIHKNVDLAEMAAKSLLERQPQNP 408 (577)
Q Consensus 343 -----~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 408 (577)
..++.....+...|++++|.+++++. ...|+. ..+..+...+...|++++|...++++.++.+...
T Consensus 504 ~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~ 576 (615)
T TIGR00990 504 YMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEG 576 (615)
T ss_pred cccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHH
Confidence 11222223344579999999999986 555644 4788899999999999999999999998876543
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.3e-13 Score=149.59 Aligned_cols=332 Identities=11% Similarity=0.051 Sum_probs=248.5
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CcchHHHH
Q 037414 89 LTNLIVANKLLYIYALHKALTDAHALFNGMKE---RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQL-DSYTLPFV 164 (577)
Q Consensus 89 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l 164 (577)
+.++....-.+......|+.++|++++.+... .+...+..+...+.+.|++++|.++|++..+. .| +...+..+
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 89 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGL 89 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 45666667778888899999999999998764 24445899999999999999999999999875 44 45566777
Q ss_pred HHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHH
Q 037414 165 IRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGT 244 (577)
Q Consensus 165 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~ 244 (577)
...+...|+.++|...++++++.. +.+.. +..+..++...|+.++|...++++.+.++. +..++.
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-------------~~~~~~ 154 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-------------TQQYPT 154 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-------------CHHHHH
Confidence 788899999999999999999874 55666 888999999999999999999998753321 122222
Q ss_pred HHHHHHHhcCCH----------------------------------------------HHHHHHHHhccC-----CChh-
Q 037414 245 AVIDMYAKCGSI----------------------------------------------DSAREIFDRMRQ-----KNVI- 272 (577)
Q Consensus 245 ~Li~~~~~~g~~----------------------------------------------~~A~~~~~~~~~-----~~~~- 272 (577)
.+..++.+.|.. ++|.+.++.+.+ |+..
T Consensus 155 ~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~ 234 (765)
T PRK10049 155 EYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATA 234 (765)
T ss_pred HHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccch
Confidence 233333333332 455555555542 2211
Q ss_pred hHH----HHHHHHHHcCChHHHHHHHHHhhhCCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC--CHHHH
Q 037414 273 SWS----AMIAAYGYHGQGKKALDLFPMMLSSRVL-PNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP--DVKHY 345 (577)
Q Consensus 273 ~~~----~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p--~~~~~ 345 (577)
.+. ..+..+...|++++|+..|+++.+.+.+ |+.. -..+..+|...|++++|...|+.+.+.....+ .....
T Consensus 235 ~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a-~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~ 313 (765)
T PRK10049 235 DYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWA-QRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEEL 313 (765)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHH-HHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHH
Confidence 111 1133456779999999999999987632 4432 22256789999999999999999875321111 13456
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC-CCCC-------------CH---hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 037414 346 TCMVDLLGRAGRLDEALKLIESM-SVEK-------------DE---GLWGALLGACRIHKNVDLAEMAAKSLLERQPQNP 408 (577)
Q Consensus 346 ~~li~~~~~~g~~~~A~~~~~~m-~~~p-------------~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 408 (577)
..+..++...|++++|.++++++ ...| +. ..+..+...+...|+.++|+..++++.+..|.++
T Consensus 314 ~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~ 393 (765)
T PRK10049 314 ADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQ 393 (765)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 66777889999999999999988 2223 21 2445666778899999999999999999999999
Q ss_pred hhHHHHHHHHhccCChhHHHHHHHHHhhCC
Q 037414 409 GHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 409 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
..+..++.++...|++++|++.+++..+..
T Consensus 394 ~l~~~lA~l~~~~g~~~~A~~~l~~al~l~ 423 (765)
T PRK10049 394 GLRIDYASVLQARGWPRAAENELKKAEVLE 423 (765)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Confidence 999999999999999999999999887654
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.7e-12 Score=140.34 Aligned_cols=358 Identities=11% Similarity=0.034 Sum_probs=262.5
Q ss_pred hHHHHHHhccC--hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHhcCCCCCcchHH-HH--HHHHHhC
Q 037414 62 FFISSLLSCRN--IFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWS-VM--VGGFSKV 136 (577)
Q Consensus 62 ~~~~ll~a~~~--~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~-~l--i~~~~~~ 136 (577)
.|...+..... ...|...+.++++......+.++ .++..+...|+.++|+..+++...|+...+. .+ ...|...
T Consensus 37 ~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~ 115 (822)
T PRK14574 37 QYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNE 115 (822)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHc
Confidence 35555544444 88999999999877522213445 8899999999999999999999877544443 33 4477888
Q ss_pred CChhHHHHHHHHHHHCCCCC-CcchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHH
Q 037414 137 ADFINCFETFREFIRCGMQL-DSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQL 215 (577)
Q Consensus 137 g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 215 (577)
|++++|+++|+++.+. .| |...+..++..+...++.++|.+.++.+.+. .|+...+..++..+...++..+|.+.
T Consensus 116 gdyd~Aiely~kaL~~--dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~ 191 (822)
T PRK14574 116 KRWDQALALWQSSLKK--DPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQA 191 (822)
T ss_pred CCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHH
Confidence 9999999999999986 34 4566677778889999999999999999876 45555665565666556777679999
Q ss_pred HhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCH---------------------------------------
Q 037414 216 FDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSI--------------------------------------- 256 (577)
Q Consensus 216 ~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~--------------------------------------- 256 (577)
++++.+.++. +...+..++....+.|-.
T Consensus 192 ~ekll~~~P~-------------n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~ 258 (822)
T PRK14574 192 SSEAVRLAPT-------------SEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTR 258 (822)
T ss_pred HHHHHHhCCC-------------CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccc
Confidence 9998754321 222222223333333322
Q ss_pred ---------HHHHHHHHhccC-----CChh-hH----HHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHh
Q 037414 257 ---------DSAREIFDRMRQ-----KNVI-SW----SAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACS 317 (577)
Q Consensus 257 ---------~~A~~~~~~~~~-----~~~~-~~----~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 317 (577)
+.|+.-++.+.. |... .| --.+-++...|+..++++.|+.|...|.+.-..+-..+.++|.
T Consensus 259 ~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl 338 (822)
T PRK14574 259 SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYI 338 (822)
T ss_pred cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Confidence 223333333322 2111 11 1235677889999999999999999886645557788999999
Q ss_pred ccCCHHHHHHHHHHhhHhcC----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhCCC-C-------------CCHh---H
Q 037414 318 HTGLVEEGLRLFSSMWDDFA----VRPDVKHYTCMVDLLGRAGRLDEALKLIESMSV-E-------------KDEG---L 376 (577)
Q Consensus 318 ~~g~~~~a~~~~~~m~~~~~----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~-------------p~~~---~ 376 (577)
..+++++|..+++.+....+ ..++......|.-+|...+++++|..+++++.- . ||.. .
T Consensus 339 ~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~ 418 (822)
T PRK14574 339 DRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEG 418 (822)
T ss_pred hcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHH
Confidence 99999999999999976432 233455567889999999999999999998821 1 2222 3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhC
Q 037414 377 WGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRR 437 (577)
Q Consensus 377 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 437 (577)
...++..+.-.|+..+|++.++++....|.|+.....+..++...|.+.+|++.++.....
T Consensus 419 ~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 419 QTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESL 479 (822)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 3445666889999999999999999999999999999999999999999999999776543
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=6e-12 Score=138.87 Aligned_cols=344 Identities=10% Similarity=0.007 Sum_probs=253.5
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHhcCCC-C-----CcchHHHHHHHHHhCCC---hhHHH
Q 037414 73 IFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKE-R-----DSVSWSVMVGGFSKVAD---FINCF 143 (577)
Q Consensus 73 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-~-----~~~~~~~li~~~~~~g~---~~~A~ 143 (577)
..++.+.+..+.+.. +-+....-.+--...+.|+.++|.++|..... + +...-+-++..|.+.+. ..+++
T Consensus 358 ~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 436 (987)
T PRK09782 358 KAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVA 436 (987)
T ss_pred hhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHH
Confidence 556666677776653 33555555555666778888888888887655 2 22234466677777665 33333
Q ss_pred HH----------------------HHHHHH-CCC-CC--CcchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHH
Q 037414 144 ET----------------------FREFIR-CGM-QL--DSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCA 197 (577)
Q Consensus 144 ~~----------------------~~~m~~-~g~-~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 197 (577)
.+ ...... .+. ++ +...|..+..++.. ++.++|...+.+..... |+.....
T Consensus 437 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L 513 (987)
T PRK09782 437 ILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHR 513 (987)
T ss_pred HhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHH
Confidence 33 111111 112 22 44556666666655 78888999888777663 5555444
Q ss_pred HHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHH
Q 037414 198 ALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAM 277 (577)
Q Consensus 198 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 277 (577)
.+...+...|++++|...|+++... +|+...+..+...+.+.|+.++|...|++..+.++..++..
T Consensus 514 ~lA~al~~~Gr~eeAi~~~rka~~~--------------~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~ 579 (987)
T PRK09782 514 AVAYQAYQVEDYATALAAWQKISLH--------------DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALY 579 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhcc--------------CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHH
Confidence 5556667999999999999987542 23334456678889999999999999998876443333333
Q ss_pred ---HHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC-HHHHHHHHHHHH
Q 037414 278 ---IAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD-VKHYTCMVDLLG 353 (577)
Q Consensus 278 ---i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~ 353 (577)
.......|++++|+..+++..+. .|+...+..+..++.+.|+.++|...++..++ ..|+ ...++.+...+.
T Consensus 580 ~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~---l~Pd~~~a~~nLG~aL~ 654 (987)
T PRK09782 580 WWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALE---LEPNNSNYQAALGYALW 654 (987)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHH
Confidence 33334559999999999999875 56788888999999999999999999999974 4554 677788888999
Q ss_pred HcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHH
Q 037414 354 RAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIR 431 (577)
Q Consensus 354 ~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 431 (577)
..|++++|+..+++. ...| +...+..+..++...|++++|+..++++++..|++..+.........+..+++.|.+.+
T Consensus 655 ~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~ 734 (987)
T PRK09782 655 DSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEV 734 (987)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHH
Confidence 999999999999987 5556 55689999999999999999999999999999999988888899999999999999888
Q ss_pred HHHhhCCC
Q 037414 432 DLMTRRRL 439 (577)
Q Consensus 432 ~~m~~~g~ 439 (577)
++--..++
T Consensus 735 ~r~~~~~~ 742 (987)
T PRK09782 735 GRRWTFSF 742 (987)
T ss_pred HHHhhcCc
Confidence 76655444
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.3e-12 Score=119.51 Aligned_cols=332 Identities=11% Similarity=0.054 Sum_probs=191.6
Q ss_pred hhHHHHHHhccC---hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHhcCC----CCCcchHHHHHHHH
Q 037414 61 KFFISSLLSCRN---IFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK----ERDSVSWSVMVGGF 133 (577)
Q Consensus 61 ~~~~~ll~a~~~---~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~ 133 (577)
.|+++++.+..+ .+.|++++..........+..++|.+|.+-.-.-+ .++..+|. .||..++|+++++.
T Consensus 208 et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL~c~ 283 (625)
T KOG4422|consen 208 ETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALLSCA 283 (625)
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHHHHH
Confidence 344444444433 44444444444444334455555555443221111 23333332 24555555555555
Q ss_pred HhCCChh----HHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCChHH-HHHHHHHHHHc----CC----CCcHHHHHHHH
Q 037414 134 SKVADFI----NCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVM-GRLIHDIVLKS----GL----DIDQFVCAALV 200 (577)
Q Consensus 134 ~~~g~~~----~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~-a~~~~~~~~~~----g~----~~~~~~~~~li 200 (577)
.+.|+++ .|++++.+|++-|+.|...+|..++..+.+.++..+ +..++.++... .+ +.|...+...+
T Consensus 284 akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM 363 (625)
T KOG4422|consen 284 AKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAM 363 (625)
T ss_pred HHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHH
Confidence 5555443 346777888888888888888888888877777644 33444444331 12 23456667777
Q ss_pred HHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCc---chhhHHHHHHHHHhcCCHHHHHHHHHhccC----CChhh
Q 037414 201 DMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLL---DVILGTAVIDMYAKCGSIDSAREIFDRMRQ----KNVIS 273 (577)
Q Consensus 201 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~---~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~----~~~~~ 273 (577)
+.|....+.+-|.++-.-....+.. - -+.| ...-|..+....|....++.-..+|+.|.. |+..+
T Consensus 364 ~Ic~~l~d~~LA~~v~~ll~tg~N~--~------~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~ 435 (625)
T KOG4422|consen 364 SICSSLRDLELAYQVHGLLKTGDNW--K------FIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQT 435 (625)
T ss_pred HHHHHhhhHHHHHHHHHHHHcCCch--h------hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchh
Confidence 8888888888888876655432211 0 1112 234566778888888899999999999874 77777
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccC-C--------HHH-----HHHHHHHh---h-Hh
Q 037414 274 WSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTG-L--------VEE-----GLRLFSSM---W-DD 335 (577)
Q Consensus 274 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g-~--------~~~-----a~~~~~~m---~-~~ 335 (577)
..-++.+..-.|+++-.-+++..|+..|..-+...-..++.-+++.. . +.. |..+++.. . +.
T Consensus 436 m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~ 515 (625)
T KOG4422|consen 436 MIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQ 515 (625)
T ss_pred HHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 77888888888998888888888888774444433333333333322 0 000 00111100 0 00
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 037414 336 FAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-------SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQ 404 (577)
Q Consensus 336 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 404 (577)
...+-.....++..-.+.|.|+.++|.+++.-+ +..|......-++....+.++...|..+++-+...+
T Consensus 516 r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 516 RAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred HhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 022334455666667777888888887777654 223333344455556666677777777777776554
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.8e-12 Score=130.50 Aligned_cols=330 Identities=14% Similarity=0.124 Sum_probs=253.0
Q ss_pred cCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CcchHHHHHHHHhcCCChHHHHH
Q 037414 104 LHKALTDAHALFNGMKE---RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQL-DSYTLPFVIRACRDRKDIVMGRL 179 (577)
Q Consensus 104 ~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~ 179 (577)
-.|++++|.+++.++.. ++...|.+|...|-+.|+.++++..+-..-. +.| |...|..+.....+.|+++.|.-
T Consensus 151 arg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAH--L~p~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAH--LNPKDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred HhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHh--cCCCChHHHHHHHHHHHhcccHHHHHH
Confidence 34999999999999865 3677899999999999999999888744444 444 66778888888899999999999
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCCh-hHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHH
Q 037414 180 IHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDL-VTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDS 258 (577)
Q Consensus 180 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~ 258 (577)
.|.++++.. |++....-.-+.+|-+.|+...|..-|.++.+.++ +.|-- ....--..+..|...++.+.
T Consensus 229 cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er---------~~d~i~~~~~~~~~~~~~e~ 298 (895)
T KOG2076|consen 229 CYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIER---------IEDLIRRVAHYFITHNERER 298 (895)
T ss_pred HHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHH---------HHHHHHHHHHHHHHhhHHHH
Confidence 999999986 67777777788999999999999999988876443 11111 11222335667778888899
Q ss_pred HHHHHHhccC-----CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCC---------------------------CCCH
Q 037414 259 AREIFDRMRQ-----KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRV---------------------------LPNR 306 (577)
Q Consensus 259 A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---------------------------~p~~ 306 (577)
|.+.++.... -+...++.++..|.+...++.|......+..... .++.
T Consensus 299 a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l 378 (895)
T KOG2076|consen 299 AAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDL 378 (895)
T ss_pred HHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccc
Confidence 9999888764 3445688999999999999999999888876222 2222
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHhCC---CCCCHhHHHHHH
Q 037414 307 ITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP--DVKHYTCMVDLLGRAGRLDEALKLIESMS---VEKDEGLWGALL 381 (577)
Q Consensus 307 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~p~~~~~~~ll 381 (577)
..+ .+.-++.+....+...-+.....++ .+.| +...|.-+.++|...|++.+|.++|..+- ...+...|-.+.
T Consensus 379 ~v~-rl~icL~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a 456 (895)
T KOG2076|consen 379 RVI-RLMICLVHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLA 456 (895)
T ss_pred hhH-hHhhhhhcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHH
Confidence 221 2223344444444444444444433 4333 46788889999999999999999999982 223567999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCCCccCCceeE
Q 037414 382 GACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTW 447 (577)
Q Consensus 382 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~s~ 447 (577)
.++...|..++|.+.+++++...|.+..+-..|...|.+.|+.++|.+++..|..-+-...+++.|
T Consensus 457 ~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~ 522 (895)
T KOG2076|consen 457 RCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAW 522 (895)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccc
Confidence 999999999999999999999999999999999999999999999999999887433333345555
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.1e-12 Score=130.58 Aligned_cols=368 Identities=15% Similarity=0.125 Sum_probs=265.7
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHhcCCCCC------cchHHHHHHHHHhCCChhHHHHHH
Q 037414 73 IFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERD------SVSWSVMVGGFSKVADFINCFETF 146 (577)
Q Consensus 73 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~------~~~~~~li~~~~~~g~~~~A~~~~ 146 (577)
...|.+++...-... ..++.+.+.|.+.|.-.|++..+..+...+...+ ..+|--+.++|-..|++++|...|
T Consensus 252 ~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY 330 (1018)
T KOG2002|consen 252 YKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYY 330 (1018)
T ss_pred HHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 445555555554443 5678889999999999999999998887765432 335777889999999999999999
Q ss_pred HHHHHCCCCCCcch--HHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCC----CHHHHHHHHhhCC
Q 037414 147 REFIRCGMQLDSYT--LPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCK----VIDDARQLFDQMP 220 (577)
Q Consensus 147 ~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~ 220 (577)
.+..+. .||.++ +.-+...+...|+++.+...|+.+.+.. +.+..+...|...|...+ ..+.|..+..+..
T Consensus 331 ~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~ 407 (1018)
T KOG2002|consen 331 MESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVL 407 (1018)
T ss_pred HHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHH
Confidence 777654 455544 4556777899999999999999998874 666788888888888775 5677777777766
Q ss_pred CCChhHHHHHHhc-------------------------CCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC-------
Q 037414 221 TRDLVTWTVMIGA-------------------------NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ------- 268 (577)
Q Consensus 221 ~~~~~~~~~~i~~-------------------------~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~------- 268 (577)
++.++..++.|.- .+.++.+.+.|.+...+...|++++|...|.+...
T Consensus 408 ~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n 487 (1018)
T KOG2002|consen 408 EQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVAN 487 (1018)
T ss_pred hcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcC
Confidence 5443322222211 55557788899999999999999999999987653
Q ss_pred CCh------hhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC
Q 037414 269 KNV------ISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRI-TFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD 341 (577)
Q Consensus 269 ~~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 341 (577)
+|. .+-..+...+-..++.+.|.+.|...... .|.-+ .|..++..-...+...+|...+...+. ....+
T Consensus 488 ~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~--~d~~n 563 (1018)
T KOG2002|consen 488 KDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALN--IDSSN 563 (1018)
T ss_pred ccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHh--cccCC
Confidence 222 12223556666778899999999998875 45543 344444333445778888888888875 34455
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCCHhHHHHHHHHHHh------------cCCHHHHHHHHHHHHhcCC
Q 037414 342 VKHYTCMVDLLGRAGRLDEALKLIESM----SVEKDEGLWGALLGACRI------------HKNVDLAEMAAKSLLERQP 405 (577)
Q Consensus 342 ~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~ll~~~~~------------~g~~~~a~~~~~~~~~~~p 405 (577)
+..++.+...+.+...+..|.+-|+.+ ...+|..+.-+|.+.|.. .+..+.|+++|.++++.+|
T Consensus 564 p~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dp 643 (1018)
T KOG2002|consen 564 PNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDP 643 (1018)
T ss_pred cHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCc
Confidence 566666777888888888888755444 334677777667665542 2347889999999999999
Q ss_pred CCchhHHHHHHHHhccCChhHHHHHHHHHhhCCCccCCceeEEEE
Q 037414 406 QNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEV 450 (577)
Q Consensus 406 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~s~~~~ 450 (577)
.|..+-+-+.-+++..|++.+|..+|.+.++......+ .|+-+
T Consensus 644 kN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~d--v~lNl 686 (1018)
T KOG2002|consen 644 KNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFED--VWLNL 686 (1018)
T ss_pred chhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCc--eeeeH
Confidence 99888888899999999999999999999887653222 46544
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.9e-14 Score=138.12 Aligned_cols=256 Identities=16% Similarity=0.155 Sum_probs=111.9
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHcC-CCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchh
Q 037414 163 FVIRACRDRKDIVMGRLIHDIVLKSG-LDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVI 241 (577)
Q Consensus 163 ~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~ 241 (577)
.+...+.+.|++++|.+++....... .+.|...|..+...+...++.+.|.+.++++...+.. +..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-------------~~~ 79 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-------------NPQ 79 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-------------ccc
Confidence 34555667778888887775444333 2345555666666777778888888888877664322 334
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhccC--CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCC-CCCCHHHHHHHHHHHhc
Q 037414 242 LGTAVIDMYAKCGSIDSAREIFDRMRQ--KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR-VLPNRITFVSLLYACSH 318 (577)
Q Consensus 242 ~~~~Li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~ 318 (577)
.+..++.. ...+++++|.++++..-+ ++...+..++..+.+.++++++.++++++.... .+++...|..+...+.+
T Consensus 80 ~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~ 158 (280)
T PF13429_consen 80 DYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQ 158 (280)
T ss_dssp ---------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHH
T ss_pred cccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHH
Confidence 45556666 677888888888776643 566677888888999999999999999977543 34566778888888999
Q ss_pred cCCHHHHHHHHHHhhHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHhHHHHHHHHHHhcCCHHHHHH
Q 037414 319 TGLVEEGLRLFSSMWDDFAVRPD-VKHYTCMVDLLGRAGRLDEALKLIESM--SVEKDEGLWGALLGACRIHKNVDLAEM 395 (577)
Q Consensus 319 ~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~ 395 (577)
.|+.++|...++..++. .|+ ......++..+...|+.+++.++++.. ....|...|..+..++...|+.++|..
T Consensus 159 ~G~~~~A~~~~~~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~ 235 (280)
T PF13429_consen 159 LGDPDKALRDYRKALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALE 235 (280)
T ss_dssp CCHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHH
T ss_pred cCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccc
Confidence 99999999999999853 564 777888999999999999988888776 123466688999999999999999999
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHh
Q 037414 396 AAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMT 435 (577)
Q Consensus 396 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 435 (577)
.+++..+.+|+|+.....++.++...|+.++|.+++.+.-
T Consensus 236 ~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 236 YLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHSTT-HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999999999987653
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.5e-10 Score=106.63 Aligned_cols=372 Identities=13% Similarity=0.135 Sum_probs=200.1
Q ss_pred hHHHHHHhccC--hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--cCCCh-------------------------HHHH
Q 037414 62 FFISSLLSCRN--IFQIRQVHAQIVAGGTLTNLIVANKLLYIYA--LHKAL-------------------------TDAH 112 (577)
Q Consensus 62 ~~~~ll~a~~~--~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~--~~g~~-------------------------~~A~ 112 (577)
+=+++++-.+. +.++.-+++.|.+.|.+.+..+--.|...-+ ...++ +-|.
T Consensus 118 ~E~nL~kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAd 197 (625)
T KOG4422|consen 118 TENNLLKMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVAD 197 (625)
T ss_pred chhHHHHHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHH
Confidence 33444443333 7777778888887777777666555544322 11111 1122
Q ss_pred HHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCc
Q 037414 113 ALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDID 192 (577)
Q Consensus 113 ~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 192 (577)
-+|+.. .++..+|..||.++|+--..++|.+++++-.....+.+..+||.++.+..- ..++++..+|+...+.||
T Consensus 198 L~~E~~-PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pn 272 (625)
T KOG4422|consen 198 LLFETL-PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPN 272 (625)
T ss_pred HHHhhc-CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCc
Confidence 222222 235567777788877777777777777777666666667777777665322 223566667776667777
Q ss_pred HHHHHHHHHHHHhCCCHHHHHH----HHhhCCC----CChhHHHHHHhc------------------------C---CC-
Q 037414 193 QFVCAALVDMYAKCKVIDDARQ----LFDQMPT----RDLVTWTVMIGA------------------------N---KF- 236 (577)
Q Consensus 193 ~~~~~~li~~~~~~g~~~~A~~----~~~~m~~----~~~~~~~~~i~~------------------------~---g~- 236 (577)
..|+|+++.+..+.|+++.|.+ ++.+|++ |...+|.-+|.- . ..
T Consensus 273 l~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~ 352 (625)
T KOG4422|consen 273 LFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPIT 352 (625)
T ss_pred hHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCC
Confidence 7777777777777776665443 3334432 222222222111 1 11
Q ss_pred CcchhhHHHHHHHHHhcCCHHHHHHHHHhccC--------CC---hhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCC
Q 037414 237 LLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ--------KN---VISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPN 305 (577)
Q Consensus 237 ~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~--------~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 305 (577)
+.|...+..-++.|....+.+-|.++-.-... ++ .+-|..+....++....+.....|+.|+-.-+-|+
T Consensus 353 p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~ 432 (625)
T KOG4422|consen 353 PTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPH 432 (625)
T ss_pred CchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCC
Confidence 11233444455555566666666665544432 11 12344556666666677777777777776666677
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcC-C--------HHH-----HHHHHH-----
Q 037414 306 RITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAG-R--------LDE-----ALKLIE----- 366 (577)
Q Consensus 306 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g-~--------~~~-----A~~~~~----- 366 (577)
..+...++.|....+.++-..++|..++ .+|..-....-.-+...+++.. + +.. |..+++
T Consensus 433 ~~~m~~~lrA~~v~~~~e~ipRiw~D~~-~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~ 511 (625)
T KOG4422|consen 433 SQTMIHLLRALDVANRLEVIPRIWKDSK-EYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQ 511 (625)
T ss_pred chhHHHHHHHHhhcCcchhHHHHHHHHH-HhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7777777777777777776666666664 3343322222222223333222 0 000 111111
Q ss_pred --hC-CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCCc--hhHHHHHHHHhccCChhHHHHHHHHHhhCC
Q 037414 367 --SM-SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQ---PQNP--GHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 367 --~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
+| ...-.....+..+-.+.+.|..++|.+++..+.+.+ |..+ .+..-+.+.-........|...++-|...+
T Consensus 512 ~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 512 PIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred HHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 11 112233445555555677777777777777775443 3322 122344444555666777777777776555
Q ss_pred C
Q 037414 439 L 439 (577)
Q Consensus 439 ~ 439 (577)
.
T Consensus 592 ~ 592 (625)
T KOG4422|consen 592 L 592 (625)
T ss_pred c
Confidence 4
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.2e-11 Score=120.85 Aligned_cols=285 Identities=11% Similarity=0.012 Sum_probs=197.1
Q ss_pred CCChHHHHHHHhcCCCC--Ccch-HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHH--HHHHHHhcCCChHHHHH
Q 037414 105 HKALTDAHALFNGMKER--DSVS-WSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLP--FVIRACRDRKDIVMGRL 179 (577)
Q Consensus 105 ~g~~~~A~~~f~~m~~~--~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~~~~~~a~~ 179 (577)
.|+++.|++.+...++. ++.. |-.......+.|+++.|.+.|.++.+. .|+..... .....+...|+.+.|.+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 59999999999877653 2333 333344558899999999999999874 56655443 33456788999999999
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHH
Q 037414 180 IHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSA 259 (577)
Q Consensus 180 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A 259 (577)
.++.+.+.. |.+..+...+...|.+.|++++|.+++..+.+....+-...- .....+|..++.......+.+..
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~-----~l~~~a~~~l~~~~~~~~~~~~l 248 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRA-----MLEQQAWIGLMDQAMADQGSEGL 248 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHH-----HHHHHHHHHHHHHHHHhcCHHHH
Confidence 999998876 667889999999999999999999999998764332100000 00002333444444455556666
Q ss_pred HHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhc
Q 037414 260 REIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDF 336 (577)
Q Consensus 260 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 336 (577)
.++++.+++ .++.....+...+...|+.++|.+++++..+. .||.... ++.+....++.+++.+..+...++
T Consensus 249 ~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~- 323 (398)
T PRK10747 249 KRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ- 323 (398)
T ss_pred HHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh-
Confidence 666666653 45667777778888888888888888777763 4444221 233344557777777777777653
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 037414 337 AVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLER 403 (577)
Q Consensus 337 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 403 (577)
.+-|...+.++...+.+.|++++|.+.|+.. ...|+...+..+...+...|+.++|.+++++.+.+
T Consensus 324 -~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 324 -HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred -CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 2234555667777777778888888777776 55677777777777777777777777777777654
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.7e-11 Score=121.92 Aligned_cols=277 Identities=12% Similarity=0.057 Sum_probs=209.6
Q ss_pred CCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHH--HHHHHHHHhCCCHHHHH
Q 037414 136 VADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC--AALVDMYAKCKVIDDAR 213 (577)
Q Consensus 136 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~--~~li~~~~~~g~~~~A~ 213 (577)
.|++++|.+.+....+.+-.| ...|.....+..+.|+.+.+.+.+.++.+. .|+.... ......+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 699999998887765542111 222333344457899999999999999875 4554333 34477899999999999
Q ss_pred HHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccCCCh-----------hhHHHHHHHHH
Q 037414 214 QLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNV-----------ISWSAMIAAYG 282 (577)
Q Consensus 214 ~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~~~li~~~~ 282 (577)
+.++++.+.++ .+..+...+...|.+.|++++|.+++..+.+... ..|..++....
T Consensus 174 ~~l~~~~~~~P-------------~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~ 240 (398)
T PRK10747 174 HGVDKLLEVAP-------------RHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAM 240 (398)
T ss_pred HHHHHHHhcCC-------------CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999876432 3577888999999999999999999999875221 13344444444
Q ss_pred HcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 037414 283 YHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEAL 362 (577)
Q Consensus 283 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 362 (577)
...+.+...++++.+.+. .+.+......+..++...|+.++|.++++...+ ..|+.... ++.+....++.+++.
T Consensus 241 ~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al 314 (398)
T PRK10747 241 ADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERLV--LLIPRLKTNNPEQLE 314 (398)
T ss_pred HhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHH--HHHhhccCCChHHHH
Confidence 555666777777776543 455777888899999999999999999999875 34554322 233334569999999
Q ss_pred HHHHhC-CCCCCH-hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHh
Q 037414 363 KLIESM-SVEKDE-GLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMT 435 (577)
Q Consensus 363 ~~~~~m-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 435 (577)
+..++. ...|+. ..+..+...|...+++++|.+.|+++.+..|++ ..|..+..++.+.|+.++|.+++++-.
T Consensus 315 ~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 315 KVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999887 445654 467788889999999999999999999999886 567899999999999999999997653
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.3e-10 Score=118.53 Aligned_cols=286 Identities=12% Similarity=0.051 Sum_probs=197.2
Q ss_pred cCCChHHHHHHHhcCCCC--Cc-chHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcc--hHHHHHHHHhcCCChHHHH
Q 037414 104 LHKALTDAHALFNGMKER--DS-VSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSY--TLPFVIRACRDRKDIVMGR 178 (577)
Q Consensus 104 ~~g~~~~A~~~f~~m~~~--~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~~~~~~a~ 178 (577)
..|+++.|.+.+.+..+. +. ..+-.....+.+.|+++.|.+.+.+..+. .|+.. .-......+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 479999999999887653 22 23444456788889999999999998764 35553 3333466778899999999
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhH---HHHHHhcCCCCcchhhHHHHHHHHHhcCC
Q 037414 179 LIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVT---WTVMIGANKFLLDVILGTAVIDMYAKCGS 255 (577)
Q Consensus 179 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~---~~~~i~~~g~~~~~~~~~~Li~~~~~~g~ 255 (577)
..++.+.+.. |-+..+...+..+|...|++++|.+.+..+.+..+.. +..+ ....+..++..-.....
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l--------~~~a~~~~l~~~~~~~~ 244 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADL--------EQKAEIGLLDEAMADEG 244 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHH--------HHHHHHHHHHHHHHhcC
Confidence 9999999886 5677889999999999999999999999987643211 0000 00112222222122223
Q ss_pred HHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHH--H-HHHHHHHhccCCHHHHHHHH
Q 037414 256 IDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRIT--F-VSLLYACSHTGLVEEGLRLF 329 (577)
Q Consensus 256 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~-~~ll~a~~~~g~~~~a~~~~ 329 (577)
.+...+.++..++ .+...+..+...+...|+.++|.+++++..+. .||... + ..........++.+.+.+.+
T Consensus 245 ~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~ 322 (409)
T TIGR00540 245 IDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLI 322 (409)
T ss_pred HHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHH
Confidence 3444555555543 47788888899999999999999999998875 344331 1 11112223456777788888
Q ss_pred HHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh--C-CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037414 330 SSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIES--M-SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLE 402 (577)
Q Consensus 330 ~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~--m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 402 (577)
+...+...-.|+.....++...+.+.|++++|.+.|+. . ...|+...+..+...+.+.|+.++|.+++++.+.
T Consensus 323 e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 323 EKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77765433333224556777788888888888888883 2 5578887777888888888888888888887654
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.42 E-value=9e-13 Score=127.70 Aligned_cols=254 Identities=17% Similarity=0.167 Sum_probs=97.2
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCCcchH-HHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCC
Q 037414 129 MVGGFSKVADFINCFETFREFIRCGMQLDSYTL-PFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCK 207 (577)
Q Consensus 129 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 207 (577)
+...+.+.|++++|++++++-.....+|+...| ..+...+...++.+.|.+.++++...+ +.+...+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-cccc
Confidence 355566777777777777554433223443333 334444556677788888888777665 2355566666666 6777
Q ss_pred CHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhcc-----CCChhhHHHHHHHHH
Q 037414 208 VIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMR-----QKNVISWSAMIAAYG 282 (577)
Q Consensus 208 ~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~ 282 (577)
++++|.+++.+.-+++ ++...+..++..|.+.|+++++..+++.+. +.+...|..+...+.
T Consensus 92 ~~~~A~~~~~~~~~~~--------------~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~ 157 (280)
T PF13429_consen 92 DPEEALKLAEKAYERD--------------GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYE 157 (280)
T ss_dssp ----------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHH
T ss_pred cccccccccccccccc--------------cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHH
Confidence 8888877776654322 234455566777788888888888877754 245667778888888
Q ss_pred HcCChHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 037414 283 YHGQGKKALDLFPMMLSSRVLPN-RITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEA 361 (577)
Q Consensus 283 ~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 361 (577)
+.|+.++|++.+++..+. .|+ ......++..+...|+.+++.+++....+. .+.+...+..+..+|...|+.++|
T Consensus 158 ~~G~~~~A~~~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~A 233 (280)
T PF13429_consen 158 QLGDPDKALRDYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEA 233 (280)
T ss_dssp HCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHH
T ss_pred HcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CcCHHHHHHHHHHHhccccccccc
Confidence 888888888888888875 454 556777888888888888888888887654 245566777888888888888888
Q ss_pred HHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037414 362 LKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLE 402 (577)
Q Consensus 362 ~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 402 (577)
..+|++. ...| |......+..++...|+.++|..+.+++.+
T Consensus 234 l~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 234 LEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccc
Confidence 8888887 3244 666777777888888888888888777654
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2e-11 Score=122.25 Aligned_cols=259 Identities=14% Similarity=0.033 Sum_probs=188.8
Q ss_pred hHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCC------ChhHHHHHHhc--------------
Q 037414 174 IVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR------DLVTWTVMIGA-------------- 233 (577)
Q Consensus 174 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~~~~~~i~~-------------- 233 (577)
..+|...|..+.+. +.-+..+..-+..+|...+++++|+++|+.+... +...|.+.+--
T Consensus 335 ~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~L 413 (638)
T KOG1126|consen 335 CREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDL 413 (638)
T ss_pred HHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHH
Confidence 44555555553322 2334456666666777777777777777666432 22233322211
Q ss_pred -CCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccCC---ChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCH-HH
Q 037414 234 -NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQK---NVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNR-IT 308 (577)
Q Consensus 234 -~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t 308 (577)
.--+..+.+|.++.++|.-.++.+.|.+.|++..+- ...+|+.+..-+.....+|.|...|+..+.. .|.. -.
T Consensus 414 i~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--~~rhYnA 491 (638)
T KOG1126|consen 414 IDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--DPRHYNA 491 (638)
T ss_pred HhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--CchhhHH
Confidence 222335788999999999999999999999998763 5578888888888899999999999987643 3332 34
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHH
Q 037414 309 FVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD-VKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACR 385 (577)
Q Consensus 309 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~ 385 (577)
|-.+...|.+.++++.|+-.|+.++ .+.|. ......+...+-+.|+.|+|++++++. ..+| |+..--.-...+.
T Consensus 492 wYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~ 568 (638)
T KOG1126|consen 492 WYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILF 568 (638)
T ss_pred HHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHH
Confidence 5567778999999999999999886 46665 455566777888999999999999988 3344 4433334455567
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCC
Q 037414 386 IHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 386 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
..+++++|...++++.+.-|++...|..++..|.+.|+.+.|..-|.-+.+..
T Consensus 569 ~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 569 SLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred hhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 78899999999999999999999999999999999999999998887776543
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.1e-10 Score=103.36 Aligned_cols=305 Identities=13% Similarity=0.137 Sum_probs=220.8
Q ss_pred CCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHcC-CCCc--HHHHHHHHHHHHhCCCHHHH
Q 037414 136 VADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSG-LDID--QFVCAALVDMYAKCKVIDDA 212 (577)
Q Consensus 136 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~--~~~~~~li~~~~~~g~~~~A 212 (577)
+.++++|+++|-+|.+.. +-+..+-.+|-+.|.+.|..++|.++|+.+.++. .+-+ ....-.|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 578999999999999842 1133444567778999999999999999988752 1111 34456677889999999999
Q ss_pred HHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccCCChhh--------HHHHHHHHHHc
Q 037414 213 RQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVIS--------WSAMIAAYGYH 284 (577)
Q Consensus 213 ~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~--------~~~li~~~~~~ 284 (577)
+.+|..+.+.+...- ....-|+..|-+..+|++|.++-+++.+-+... |.-+...+...
T Consensus 127 E~~f~~L~de~efa~-------------~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~ 193 (389)
T COG2956 127 EDIFNQLVDEGEFAE-------------GALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALAS 193 (389)
T ss_pred HHHHHHHhcchhhhH-------------HHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhh
Confidence 999999887544433 344568999999999999999998876533333 44555566667
Q ss_pred CChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 037414 285 GQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKL 364 (577)
Q Consensus 285 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 364 (577)
.+.+.|..++.+..+...+. ...-..+-......|+++.|.+.++.+.+. +..--..+...|..+|...|+.++...+
T Consensus 194 ~~~d~A~~~l~kAlqa~~~c-vRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~f 271 (389)
T COG2956 194 SDVDRARELLKKALQADKKC-VRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGLNF 271 (389)
T ss_pred hhHHHHHHHHHHHHhhCccc-eehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 89999999999988764222 222234566788899999999999999754 4333467788899999999999999999
Q ss_pred HHhC-CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH---hccCChhHHHHHHHHHhhCCCc
Q 037414 365 IESM-SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVY---ANAGRWQDVAKIRDLMTRRRLK 440 (577)
Q Consensus 365 ~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~---~~~g~~~~A~~~~~~m~~~g~~ 440 (577)
+.++ ...++...-..+...-....-.+.|...+.+-+...|.-. .+..|+..- +..|++.+....+..|....++
T Consensus 272 L~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~-gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~ 350 (389)
T COG2956 272 LRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMR-GFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLR 350 (389)
T ss_pred HHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHH-HHHHHHHhhhccccccchhhhHHHHHHHHHHHHh
Confidence 9887 4455555555555555566667778888777777777754 444455443 2446688888899999888887
Q ss_pred cCCceeEEEECCEEEEE
Q 037414 441 KIPGWTWIEVENKIHQF 457 (577)
Q Consensus 441 ~~~~~s~~~~~~~~~~~ 457 (577)
..|.+..-..+-..|.|
T Consensus 351 ~~~~YRC~~CGF~a~~l 367 (389)
T COG2956 351 RKPRYRCQNCGFTAHTL 367 (389)
T ss_pred hcCCceecccCCcceee
Confidence 77766555444444443
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.8e-10 Score=116.16 Aligned_cols=283 Identities=12% Similarity=0.026 Sum_probs=203.3
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCCcch-HHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHH
Q 037414 134 SKVADFINCFETFREFIRCGMQLDSYT-LPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDA 212 (577)
Q Consensus 134 ~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 212 (577)
...|+++.|.+.+.+..+. .|+... +-....+....|+.+.+.+.+.+..+....++..+.-.....+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 4579999999999887764 455433 3344556778899999999999987764222234555568899999999999
Q ss_pred HHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccCC---ChhhHHH----HHHHHHHcC
Q 037414 213 RQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQK---NVISWSA----MIAAYGYHG 285 (577)
Q Consensus 213 ~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~----li~~~~~~g 285 (577)
...++.+.+..+ .+..+...+...|...|++++|.+.+..+.+. +...+.. ...++...+
T Consensus 173 l~~l~~l~~~~P-------------~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~ 239 (409)
T TIGR00540 173 RHGVDKLLEMAP-------------RHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEA 239 (409)
T ss_pred HHHHHHHHHhCC-------------CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999876432 25678889999999999999999999998752 3322321 112223333
Q ss_pred ChHHHHHHHHHhhhCCC---CCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHH-HHHHHH--HHHcCCHH
Q 037414 286 QGKKALDLFPMMLSSRV---LPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHY-TCMVDL--LGRAGRLD 359 (577)
Q Consensus 286 ~~~~A~~l~~~m~~~g~---~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~-~~li~~--~~~~g~~~ 359 (577)
..+++.+.+..+..... +.+...+..+...+...|+.++|.+++++.+++ .|+.... ..++.. ....++.+
T Consensus 240 ~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~ 316 (409)
T TIGR00540 240 MADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNE 316 (409)
T ss_pred HHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChH
Confidence 33334445555554321 237778888889999999999999999999864 3443311 012222 23457788
Q ss_pred HHHHHHHhC-CCCCCH---hHHHHHHHHHHhcCCHHHHHHHHHH--HHhcCCCCchhHHHHHHHHhccCChhHHHHHHHH
Q 037414 360 EALKLIESM-SVEKDE---GLWGALLGACRIHKNVDLAEMAAKS--LLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDL 433 (577)
Q Consensus 360 ~A~~~~~~m-~~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~--~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 433 (577)
.+.+.+++. ...|+. ....++...+.+.|++++|.+.|++ ..+..|++ ..+..+...+.+.|+.++|.+++++
T Consensus 317 ~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~-~~~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 317 KLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDA-NDLAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888888776 334533 5667888899999999999999994 66667765 4577999999999999999999986
Q ss_pred Hh
Q 037414 434 MT 435 (577)
Q Consensus 434 m~ 435 (577)
-.
T Consensus 396 ~l 397 (409)
T TIGR00540 396 SL 397 (409)
T ss_pred HH
Confidence 53
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.8e-10 Score=109.91 Aligned_cols=276 Identities=14% Similarity=0.158 Sum_probs=210.8
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCCcchHHH--HHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCC
Q 037414 131 GGFSKVADFINCFETFREFIRCGMQLDSYTLPF--VIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKV 208 (577)
Q Consensus 131 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~--ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 208 (577)
..|.++|+++.|++++.-+.+..-+.-...-+. .+......+++..|.+.-+..+... .-+....+.--+.-...|+
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd 505 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGD 505 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCc
Confidence 357889999999999988876533322222222 2333334556777777776665432 2233333333344556799
Q ss_pred HHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhcc---CCChhhHHHHHHHHHHcC
Q 037414 209 IDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMR---QKNVISWSAMIAAYGYHG 285 (577)
Q Consensus 209 ~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g 285 (577)
+++|.+.+.+....|.....+ .|| +.-.+-+.|++++|+..|-++. ..++.....+.+.|-...
T Consensus 506 ~dka~~~ykeal~ndasc~ea------------lfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~le 572 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDASCTEA------------LFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLE 572 (840)
T ss_pred HHHHHHHHHHHHcCchHHHHH------------HHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 999999999988876554222 222 3445778999999999998875 367777788889999999
Q ss_pred ChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 037414 286 QGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLI 365 (577)
Q Consensus 286 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 365 (577)
++.+|++++.+.... ++-|+....-|...|-+.|+-.+|.+.+-.--+ -++-+.++..-|..-|....-+++|...|
T Consensus 573 d~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ 649 (840)
T KOG2003|consen 573 DPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYF 649 (840)
T ss_pred CHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999999877654 566777888899999999999999998765532 34557888888888899999999999999
Q ss_pred HhC-CCCCCHhHHHHHHHHH-HhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCC
Q 037414 366 ESM-SVEKDEGLWGALLGAC-RIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGR 423 (577)
Q Consensus 366 ~~m-~~~p~~~~~~~ll~~~-~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 423 (577)
++. -++|+..-|..++..| ++.|++..|..+++...+..|.+......|++.+...|.
T Consensus 650 ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 650 EKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 998 5789999999998775 778999999999999999999999999999999988874
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.7e-09 Score=104.27 Aligned_cols=379 Identities=14% Similarity=0.098 Sum_probs=278.0
Q ss_pred CChhhHHHHHHhccChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHhcCCC---CCcchHHHHHHHHH
Q 037414 58 VDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKE---RDSVSWSVMVGGFS 134 (577)
Q Consensus 58 p~~~~~~~ll~a~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~ 134 (577)
|+++.+-.........+.|+.++...++.- +.+...|.+ |++..-++.|.+++++..+ .+...|-+-...=-
T Consensus 377 P~sv~LWKaAVelE~~~darilL~rAvecc-p~s~dLwlA----larLetYenAkkvLNkaRe~iptd~~IWitaa~LEE 451 (913)
T KOG0495|consen 377 PRSVRLWKAAVELEEPEDARILLERAVECC-PQSMDLWLA----LARLETYENAKKVLNKAREIIPTDREIWITAAKLEE 451 (913)
T ss_pred CchHHHHHHHHhccChHHHHHHHHHHHHhc-cchHHHHHH----HHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHH
Confidence 444444443333444666777777776653 445555554 4555667888888887655 37777877777677
Q ss_pred hCCChhHHHHHHHH----HHHCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCc--HHHHHHHHHHHHhCCC
Q 037414 135 KVADFINCFETFRE----FIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDID--QFVCAALVDMYAKCKV 208 (577)
Q Consensus 135 ~~g~~~~A~~~~~~----m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~ 208 (577)
.+|+.+...++..+ +...|+..+..-|..=..+|-..|..-....+....+..|++.. ..+|+.-.+.|.+.+.
T Consensus 452 ~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~ 531 (913)
T KOG0495|consen 452 ANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPA 531 (913)
T ss_pred hcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcch
Confidence 78888887777654 34567777777777777777777777777777777777775432 4577777777888888
Q ss_pred HHHHHHHHhhCCCC---ChhHHHHHHhc------------------CCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhcc
Q 037414 209 IDDARQLFDQMPTR---DLVTWTVMIGA------------------NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMR 267 (577)
Q Consensus 209 ~~~A~~~~~~m~~~---~~~~~~~~i~~------------------~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~ 267 (577)
++-|+.+|....+- +...|...... ...+.....|-.....+...|++..|+.++.+.-
T Consensus 532 ~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af 611 (913)
T KOG0495|consen 532 IECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAF 611 (913)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 88887777665431 22334322221 3344456667777778888999999999998876
Q ss_pred C---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC-HH
Q 037414 268 Q---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD-VK 343 (577)
Q Consensus 268 ~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~ 343 (577)
+ .+...|-+-+.....+.+++.|..+|.+... ..|+...|.--+..-.-.++.++|.+++++.++. -|+ ..
T Consensus 612 ~~~pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~---fp~f~K 686 (913)
T KOG0495|consen 612 EANPNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKS---FPDFHK 686 (913)
T ss_pred HhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh---CCchHH
Confidence 5 3456788888999999999999999999876 4677777766666666679999999999999864 344 56
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhcc
Q 037414 344 HYTCMVDLLGRAGRLDEALKLIESM-SVEKDE-GLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANA 421 (577)
Q Consensus 344 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 421 (577)
.|-.+.+.+-+.++++.|.+.|..- ..-|+. ..|-.|...-.+.|++-.|..++++..-.+|.+...|...+.+-.+.
T Consensus 687 l~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~ 766 (913)
T KOG0495|consen 687 LWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRA 766 (913)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHc
Confidence 7777888899999999999988765 445654 48888888888999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHhhCCCccCCceeEE
Q 037414 422 GRWQDVAKIRDLMTRRRLKKIPGWTWI 448 (577)
Q Consensus 422 g~~~~A~~~~~~m~~~g~~~~~~~s~~ 448 (577)
|+.+.|..+..+..+.- |..|.-|.
T Consensus 767 gn~~~a~~lmakALQec--p~sg~LWa 791 (913)
T KOG0495|consen 767 GNKEQAELLMAKALQEC--PSSGLLWA 791 (913)
T ss_pred CCHHHHHHHHHHHHHhC--CccchhHH
Confidence 99999998877665432 23344453
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.9e-10 Score=106.60 Aligned_cols=257 Identities=12% Similarity=0.133 Sum_probs=202.6
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhH
Q 037414 164 VIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILG 243 (577)
Q Consensus 164 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~ 243 (577)
+..++......+++.+-.......|++.....-+-...++-...++|+|+.+|+++.+.|+.-. .|..+|
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl----------~dmdly 302 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRL----------DDMDLY 302 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcc----------hhHHHH
Confidence 3445666667788888888888889888877777777778888999999999999988776532 255666
Q ss_pred HHHHHHHHhcCCHH-HHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHhccCC
Q 037414 244 TAVIDMYAKCGSID-SAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPN-RITFVSLLYACSHTGL 321 (577)
Q Consensus 244 ~~Li~~~~~~g~~~-~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~ 321 (577)
+.++-.--++.++. -|..+++ +-+--+.|...+.+.|+-.++.++|...|++.++.+ |. ...++.+.+-|....+
T Consensus 303 SN~LYv~~~~skLs~LA~~v~~-idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN--p~~~~aWTLmGHEyvEmKN 379 (559)
T KOG1155|consen 303 SNVLYVKNDKSKLSYLAQNVSN-IDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN--PKYLSAWTLMGHEYVEMKN 379 (559)
T ss_pred hHHHHHHhhhHHHHHHHHHHHH-hccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC--cchhHHHHHhhHHHHHhcc
Confidence 66653332222222 2222222 223334567778888999999999999999998753 33 4567777788999999
Q ss_pred HHHHHHHHHHhhHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHH
Q 037414 322 VEEGLRLFSSMWDDFAVRP-DVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAK 398 (577)
Q Consensus 322 ~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~ 398 (577)
...|.+-++..++ +.| |-..|-.|.++|.-.+...-|+-.|++. ..+| |...|.+|..+|.+.++.++|+..|.
T Consensus 380 t~AAi~sYRrAvd---i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCyk 456 (559)
T KOG1155|consen 380 THAAIESYRRAVD---INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYK 456 (559)
T ss_pred cHHHHHHHHHHHh---cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHH
Confidence 9999999999974 444 6788999999999999999999999998 5667 67799999999999999999999999
Q ss_pred HHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhh
Q 037414 399 SLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTR 436 (577)
Q Consensus 399 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 436 (577)
++...+..+...|..|.++|.+.++.++|.+.++.-.+
T Consensus 457 rai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 457 RAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999887888999999999999999999999987664
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.6e-11 Score=117.84 Aligned_cols=280 Identities=15% Similarity=0.089 Sum_probs=216.5
Q ss_pred ChHHHHHHHhcCCCC--Ccc-hHHHHHHHHHhCCChhHHHHHHHHHHHCC--CCCCcchHHHHHHHHhcCCChHHHHHHH
Q 037414 107 ALTDAHALFNGMKER--DSV-SWSVMVGGFSKVADFINCFETFREFIRCG--MQLDSYTLPFVIRACRDRKDIVMGRLIH 181 (577)
Q Consensus 107 ~~~~A~~~f~~m~~~--~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 181 (577)
+..+|...|...++. |+- .-.-+..+|...+++++|.++|+...+.. -.-+...|.+.+--+-+. -+...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 467899999987653 333 33456788999999999999999998742 112567788877654321 122222
Q ss_pred -HHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHH
Q 037414 182 -DIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAR 260 (577)
Q Consensus 182 -~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~ 260 (577)
+.+++.. +..+.+|.++.++|.-.++.+.|.+.|++..+-|+. ...+|+.+..-+.....+|.|.
T Consensus 410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-------------faYayTLlGhE~~~~ee~d~a~ 475 (638)
T KOG1126|consen 410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-------------FAYAYTLLGHESIATEEFDKAM 475 (638)
T ss_pred HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-------------cchhhhhcCChhhhhHHHHhHH
Confidence 2333332 556889999999999999999999999998875531 5678888888899999999999
Q ss_pred HHHHhccCCChhhHHH---HHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcC
Q 037414 261 EIFDRMRQKNVISWSA---MIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFA 337 (577)
Q Consensus 261 ~~~~~~~~~~~~~~~~---li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 337 (577)
..|+.....|+..||+ +...|.+.++++.|+-.|++..+-+ +-+.+....+...+-+.|+.|+|.++++++. .
T Consensus 476 ~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~---~ 551 (638)
T KOG1126|consen 476 KSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAI---H 551 (638)
T ss_pred HHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHH---h
Confidence 9999999888877666 5678999999999999999998753 2345556667778888999999999999987 3
Q ss_pred CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 037414 338 VRPD-VKHYTCMVDLLGRAGRLDEALKLIESM-SVEKDE-GLWGALLGACRIHKNVDLAEMAAKSLLERQPQNP 408 (577)
Q Consensus 338 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 408 (577)
+.|. +..---.+..+...++.++|+..++++ .+.|+. ..+..+...|.+.|+.+.|+.-|.-+.+++|+-.
T Consensus 552 ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 552 LDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred cCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 4443 333334456677889999999999999 456755 4777788889999999999999999999998743
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.7e-10 Score=109.06 Aligned_cols=189 Identities=16% Similarity=0.174 Sum_probs=148.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCC-CHHHHHHHHHHHh
Q 037414 242 LGTAVIDMYAKCGSIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLP-NRITFVSLLYACS 317 (577)
Q Consensus 242 ~~~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~ 317 (577)
.|--+..+|....+-++..+.|++..+ .|..+|.--...+.-.+++++|..=|++.+.. .| +...|.-+..+.-
T Consensus 362 lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--~pe~~~~~iQl~~a~Y 439 (606)
T KOG0547|consen 362 LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL--DPENAYAYIQLCCALY 439 (606)
T ss_pred HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--ChhhhHHHHHHHHHHH
Confidence 366666777888888888888877654 34456666666666677888999999888764 34 4557777777778
Q ss_pred ccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC---------HhHHHHHHHHHHhc
Q 037414 318 HTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEKD---------EGLWGALLGACRIH 387 (577)
Q Consensus 318 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~---------~~~~~~ll~~~~~~ 387 (577)
+.+.++++...|++..++ ++..+++|+.....+...+++++|.+.|+.. .++|+ +.+-.+++..-- .
T Consensus 440 r~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qw-k 516 (606)
T KOG0547|consen 440 RQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQW-K 516 (606)
T ss_pred HHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhch-h
Confidence 889999999999999764 6666889999999999999999999999876 44443 222233333322 3
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHh
Q 037414 388 KNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMT 435 (577)
Q Consensus 388 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 435 (577)
+++..|+++++++.+.+|....+|..|...-.+.|+.++|.++|++-.
T Consensus 517 ~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 517 EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999998754
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.7e-10 Score=116.26 Aligned_cols=407 Identities=13% Similarity=0.076 Sum_probs=282.3
Q ss_pred HhhccCCCCCCCCCcccCccCCCCCCCCCCCChhh-HHHHHHhccChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 037414 28 IALEPHGHEQNPMNPRVPMQMGPDCQFTRSVDPKF-FISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHK 106 (577)
Q Consensus 28 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~-~~~ll~a~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 106 (577)
......|++..|+.+|...... +|...||+.. ..-.+.-|...+.|+..|....+.. +.++.++-.|--.-....
T Consensus 172 ~i~ynkkdY~~al~yyk~al~i---np~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLd-p~~v~alv~L~~~~l~~~ 247 (1018)
T KOG2002|consen 172 RIAYNKKDYRGALKYYKKALRI---NPACKADVRIGIGHCFWKLGMSEKALLAFERALQLD-PTCVSALVALGEVDLNFN 247 (1018)
T ss_pred HHHhccccHHHHHHHHHHHHhc---CcccCCCccchhhhHHHhccchhhHHHHHHHHHhcC-hhhHHHHHHHHHHHHHcc
Confidence 3355677888999998886655 4456677643 2334455666888888888887654 233333333322222222
Q ss_pred ---ChHHHHHHHhcCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCC--CCcchHHHHHHHHhcCCChHHHH
Q 037414 107 ---ALTDAHALFNGMKE---RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQ--LDSYTLPFVIRACRDRKDIVMGR 178 (577)
Q Consensus 107 ---~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~t~~~ll~~~~~~~~~~~a~ 178 (577)
.+..+..++...-. .|++..+.|..-|.-.|++..++.+...+...... .-...|-.+.+++-..|+++.|.
T Consensus 248 d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~ 327 (1018)
T KOG2002|consen 248 DSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAF 327 (1018)
T ss_pred chHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHH
Confidence 34455555554432 48888999999999999999999999888775311 12345777888888999999999
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcC----
Q 037414 179 LIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCG---- 254 (577)
Q Consensus 179 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g---- 254 (577)
+.|.+..+..-..-+..+-.|..+|.+.|+++.|...|+.+.... +.+..+...|...|+..+
T Consensus 328 ~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-------------p~~~etm~iLG~Lya~~~~~~~ 394 (1018)
T KOG2002|consen 328 KYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-------------PNNYETMKILGCLYAHSAKKQE 394 (1018)
T ss_pred HHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-------------cchHHHHHHHHhHHHhhhhhhH
Confidence 999887766422113445568899999999999999999886532 234566677788887765
Q ss_pred CHHHHHHHHHhccCC---ChhhHHHHHHHHHHcCChHHHHHHHHHhh----hCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 037414 255 SIDSAREIFDRMRQK---NVISWSAMIAAYGYHGQGKKALDLFPMML----SSRVLPNRITFVSLLYACSHTGLVEEGLR 327 (577)
Q Consensus 255 ~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~----~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 327 (577)
..+.|..+..+..++ |...|-.+...+-+ +++..++..|.... ..+-.+.....|.+.......|++++|..
T Consensus 395 ~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~ 473 (1018)
T KOG2002|consen 395 KRDKASNVLGKVLEQTPVDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALE 473 (1018)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHH
Confidence 567777777777653 45567666666654 44445576666543 44555777889999999999999999999
Q ss_pred HHHHhhHhcC--CCCCH------HHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHh-HHHHHHHHHHhcCCHHHHHHHH
Q 037414 328 LFSSMWDDFA--VRPDV------KHYTCMVDLLGRAGRLDEALKLIESM-SVEKDEG-LWGALLGACRIHKNVDLAEMAA 397 (577)
Q Consensus 328 ~~~~m~~~~~--~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~ 397 (577)
.|........ ..++. .+---+...+-..++.+.|.+.|..+ ...|.-+ .|--++......++..+|...+
T Consensus 474 ~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~l 553 (1018)
T KOG2002|consen 474 HFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLL 553 (1018)
T ss_pred HHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHH
Confidence 9998864311 12222 11223344555677899999999988 3355543 5555554556668899999999
Q ss_pred HHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCCCccCCceeEEEECC
Q 037414 398 KSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVEN 452 (577)
Q Consensus 398 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~s~~~~~~ 452 (577)
+.++..+..+|..+..+.+.|.+...|..|.+-|....++-......++.+.+++
T Consensus 554 k~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN 608 (1018)
T KOG2002|consen 554 KDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGN 608 (1018)
T ss_pred HHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhH
Confidence 9999999999999999999999999999999988877766555544566666665
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1e-08 Score=102.53 Aligned_cols=365 Identities=13% Similarity=0.090 Sum_probs=250.7
Q ss_pred hHHHHHHhccC---hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHh
Q 037414 62 FFISSLLSCRN---IFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKE---RDSVSWSVMVGGFSK 135 (577)
Q Consensus 62 ~~~~ll~a~~~---~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~ 135 (577)
|+...-+.|.+ ++.++.||...++- ++.+..+|...+..=-..|..++-..+|.+... .....|-.....+..
T Consensus 518 tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~ 596 (913)
T KOG0495|consen 518 TWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWK 596 (913)
T ss_pred HHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHh
Confidence 44444444444 66666777766654 355566666666655566666766666666543 244456666666666
Q ss_pred CCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHH
Q 037414 136 VADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQL 215 (577)
Q Consensus 136 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 215 (577)
.|+...|..++...-+... -+...|...+..-.....+++|+.++.+.... .|+..+|.--+..---.|..++|.++
T Consensus 597 agdv~~ar~il~~af~~~p-nseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rl 673 (913)
T KOG0495|consen 597 AGDVPAARVILDQAFEANP-NSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRL 673 (913)
T ss_pred cCCcHHHHHHHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHH
Confidence 7777777777766666421 14455666666666777777777777766543 45666666666665566777777777
Q ss_pred HhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC--CC-hhhHHHHHHHHHHcCChHHHHH
Q 037414 216 FDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ--KN-VISWSAMIAAYGYHGQGKKALD 292 (577)
Q Consensus 216 ~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~ 292 (577)
+++..+. ++.-...|-.+...+-+.++++.|...|..-.+ |+ +..|-.+...--+.|++-.|..
T Consensus 674 lEe~lk~-------------fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ 740 (913)
T KOG0495|consen 674 LEEALKS-------------FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARS 740 (913)
T ss_pred HHHHHHh-------------CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHH
Confidence 7665432 222345667777777777788887777776554 33 3457666666667778888888
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCC
Q 037414 293 LFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEK 372 (577)
Q Consensus 293 l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p 372 (577)
+|++....+ +-|...|...|..=.+.|+.+.|..+..+.+++ ++.+...|..-|.+..+.++-..+.+.+++.. .
T Consensus 741 ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~DALkkce--~ 815 (913)
T KOG0495|consen 741 ILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--H 815 (913)
T ss_pred HHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhccCcccchHHHHHHHhcc--C
Confidence 888776654 345667777777778888888888887777764 45566677777777777777666666666553 4
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCCCccCCceeEEEE
Q 037414 373 DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEV 450 (577)
Q Consensus 373 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~s~~~~ 450 (577)
|..+.-++...+-...+++.|...|.+..+.+|++..+|..+...+.+.|.-++-.+++....... |.-|..|..+
T Consensus 816 dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~E--P~hG~~W~av 891 (913)
T KOG0495|consen 816 DPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAE--PTHGELWQAV 891 (913)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCCCcHHHHH
Confidence 566666777778888899999999999999999999999999999999999999999998876543 4456677655
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.1e-10 Score=105.01 Aligned_cols=197 Identities=14% Similarity=0.107 Sum_probs=165.9
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 037414 239 DVILGTAVIDMYAKCGSIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYA 315 (577)
Q Consensus 239 ~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 315 (577)
....+..+...|...|++++|...|++..+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 356778889999999999999999998764 346678888999999999999999999998764 3355677778889
Q ss_pred HhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHH
Q 037414 316 CSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLA 393 (577)
Q Consensus 316 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a 393 (577)
+...|++++|.+.++...+..........+..+...+...|++++|.+.+++. ...| +...+..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999754222334566777888999999999999999887 3344 456788888999999999999
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhh
Q 037414 394 EMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTR 436 (577)
Q Consensus 394 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 436 (577)
...+++..+..|.++..+..++..+...|+.++|..+.+.+.+
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999998888888888999999999999999999887764
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.8e-08 Score=94.91 Aligned_cols=283 Identities=11% Similarity=0.132 Sum_probs=213.1
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHcCC--CCcHHHHHHHHHHHHhCCCH
Q 037414 132 GFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGL--DIDQFVCAALVDMYAKCKVI 209 (577)
Q Consensus 132 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~ 209 (577)
++-...+.++++.-.......|..-+...-+....+.-...++++|..+|+++.+... -.|..+|+.++-.--.+.++
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skL 315 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKL 315 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHH
Confidence 3444445666777677777776654444333344445677899999999999998742 12567777765433322222
Q ss_pred H-HHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccCC---ChhhHHHHHHHHHHcC
Q 037414 210 D-DARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQK---NVISWSAMIAAYGYHG 285 (577)
Q Consensus 210 ~-~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g 285 (577)
. -|..+++-=+ + -+.|...+.+-|+-.++.++|...|++..+- ....|+.|..-|....
T Consensus 316 s~LA~~v~~idK---------------y--R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmK 378 (559)
T KOG1155|consen 316 SYLAQNVSNIDK---------------Y--RPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMK 378 (559)
T ss_pred HHHHHHHHHhcc---------------C--CccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhc
Confidence 2 2333332211 1 2345667788999999999999999998763 3567999999999999
Q ss_pred ChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Q 037414 286 QGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP-DVKHYTCMVDLLGRAGRLDEALKL 364 (577)
Q Consensus 286 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~ 364 (577)
+...|++-++..++-. +-|-..|-.|..+|.-.+...-|.-+|++.. .++| |...|.+|.+.|.+.+++++|.+.
T Consensus 379 Nt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~---~~kPnDsRlw~aLG~CY~kl~~~~eAiKC 454 (559)
T KOG1155|consen 379 NTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKAL---ELKPNDSRLWVALGECYEKLNRLEEAIKC 454 (559)
T ss_pred ccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHH---hcCCCchHHHHHHHHHHHHhccHHHHHHH
Confidence 9999999999999863 5577899999999999999999999999986 4566 588999999999999999999999
Q ss_pred HHhC--CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCCCchhHHHHHHHHhccCChhHHHHHHHHHh
Q 037414 365 IESM--SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLER-------QPQNPGHYVLLSNVYANAGRWQDVAKIRDLMT 435 (577)
Q Consensus 365 ~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 435 (577)
|.+. .-+.+...+..|...+.+.++.++|...+++-++. +|....+-..|..-+.+.+++++|........
T Consensus 455 ykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 455 YKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred HHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 9988 22345578999999999999999999999988763 23334455568888999999999988765543
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.9e-09 Score=98.40 Aligned_cols=287 Identities=11% Similarity=0.022 Sum_probs=217.8
Q ss_pred CCChHHHHHHHhcCCCC---CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCChHHHHHHH
Q 037414 105 HKALTDAHALFNGMKER---DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIH 181 (577)
Q Consensus 105 ~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 181 (577)
.|++..|+++..+-.+. ....|-.-+.+.-+.|+.+.+-.++.+..+.--.++...+.+........|+.+.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 59999999999876543 344566666778889999999999999887533344445555566688899999999999
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHH
Q 037414 182 DIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSARE 261 (577)
Q Consensus 182 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~ 261 (577)
.++.+.+ +-+..+......+|.+.|++.....+..++.+....+-.-+. .....+|+.+++-....+..+.-..
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~-----~le~~a~~glL~q~~~~~~~~gL~~ 250 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA-----RLEQQAWEGLLQQARDDNGSEGLKT 250 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH-----HHHHHHHHHHHHHHhccccchHHHH
Confidence 9888876 667889999999999999999999999999875443211110 1134466677776666666666666
Q ss_pred HHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCC
Q 037414 262 IFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAV 338 (577)
Q Consensus 262 ~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 338 (577)
.++..++ .++..-.+++.-+.+.|+.++|.++..+..+.+..|+.. .+-.+.+.++.+.-.+..+.-.+.++.
T Consensus 251 ~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h~~ 326 (400)
T COG3071 251 WWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQHPE 326 (400)
T ss_pred HHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHhCCC
Confidence 7777763 456667778888889999999999999888887777632 233566777777777777777766565
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 037414 339 RPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLER 403 (577)
Q Consensus 339 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 403 (577)
.| ..+.+|...|.+.+.|.+|.+.|+.. +.+|+..+|+-+..++.+.|+.++|.+..++.+-+
T Consensus 327 ~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 327 DP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred Ch--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 55 66778888888888899988888876 67788888888888888888888888888887644
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.4e-12 Score=85.95 Aligned_cols=50 Identities=24% Similarity=0.446 Sum_probs=46.8
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhc
Q 037414 269 KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSH 318 (577)
Q Consensus 269 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 318 (577)
||+++||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.29 E-value=8.9e-11 Score=120.67 Aligned_cols=270 Identities=14% Similarity=0.148 Sum_probs=170.0
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHH
Q 037414 180 IHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSA 259 (577)
Q Consensus 180 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A 259 (577)
++..+...|+.|+..||..||.-||..|+++.|- +|.-|.-++. +.+..+++.++......++.+.+
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksL------------pv~e~vf~~lv~sh~~And~Enp 78 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSL------------PVREGVFRGLVASHKEANDAENP 78 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccc------------cccchhHHHHHhcccccccccCC
Confidence 4455666677777777777777777777777666 6666665432 33556666677766666666655
Q ss_pred HHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCC
Q 037414 260 REIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVR 339 (577)
Q Consensus 260 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 339 (577)
. +|...+|+.+..+|.++||..- ++..++ -...+...++..|....-..++..+.-..+.-
T Consensus 79 k-------ep~aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~l 139 (1088)
T KOG4318|consen 79 K-------EPLADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSL 139 (1088)
T ss_pred C-------CCchhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccc
Confidence 4 5666778888888888887654 222222 11223344455555555555555442222344
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 037414 340 PDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHK-NVDLAEMAAKSLLERQPQNPGHYVLLSNVY 418 (577)
Q Consensus 340 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 418 (577)
||.. ..+..+.-.|.++.+.+++..+|...-......+++-+.... .+++-....+...+ ..++.+|..++..-
T Consensus 140 pda~---n~illlv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e--~~~s~~l~a~l~~a 214 (1088)
T KOG4318|consen 140 PDAE---NAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE--APTSETLHAVLKRA 214 (1088)
T ss_pred hhHH---HHHHHHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc--CCChHHHHHHHHHH
Confidence 4543 344445566778888888888753321112222344443332 33444444444444 45678999999999
Q ss_pred hccCChhHHHHHHHHHhhCCCccCCceeEEEECCEEEEEEecCCCCcccHHHHHHHHHHHHHHHHCCcccCCCccccccc
Q 037414 419 ANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVD 498 (577)
Q Consensus 419 ~~~g~~~~A~~~~~~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~ 498 (577)
..+|+.+-|..++.+|+++|+...+.+.|..+.+ ... ...++.+.+-|++.|+.|++.+....+.
T Consensus 215 laag~~d~Ak~ll~emke~gfpir~HyFwpLl~g--------~~~-------~q~~e~vlrgmqe~gv~p~seT~adyvi 279 (1088)
T KOG4318|consen 215 LAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG--------INA-------AQVFEFVLRGMQEKGVQPGSETQADYVI 279 (1088)
T ss_pred HhcCchhhHHHHHHHHHHcCCCcccccchhhhhc--------Ccc-------chHHHHHHHHHHHhcCCCCcchhHHHHH
Confidence 9999999999999999999999999999987633 111 1234467889999999999988665554
Q ss_pred hhh
Q 037414 499 EEV 501 (577)
Q Consensus 499 ~~~ 501 (577)
++-
T Consensus 280 p~l 282 (1088)
T KOG4318|consen 280 PQL 282 (1088)
T ss_pred hhh
Confidence 443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.5e-10 Score=106.14 Aligned_cols=233 Identities=14% Similarity=0.108 Sum_probs=167.6
Q ss_pred HHHhCCCHHHHHHHHhhCCCCChhHHHHH---------Hh-c---------CCCCcchhhHHHH-----HHHHHhcCCHH
Q 037414 202 MYAKCKVIDDARQLFDQMPTRDLVTWTVM---------IG-A---------NKFLLDVILGTAV-----IDMYAKCGSID 257 (577)
Q Consensus 202 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~---------i~-~---------~g~~~~~~~~~~L-----i~~~~~~g~~~ 257 (577)
-|.+.|+++.|.+++.-..++|..+-++. +. | ..+..+..-||.- .+.-...|+++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~d 507 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLD 507 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHH
Confidence 46788899988888776665543322111 11 1 1112222222221 12233578999
Q ss_pred HHHHHHHhccCCChhhHHHH---HHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhH
Q 037414 258 SAREIFDRMRQKNVISWSAM---IAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWD 334 (577)
Q Consensus 258 ~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 334 (577)
+|.+.|.+....|...-.++ .-.+-..|+.++|++.|-++..- +.-+......+...|....+..+|++++.+...
T Consensus 508 ka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s 586 (840)
T KOG2003|consen 508 KAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS 586 (840)
T ss_pred HHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc
Confidence 99999999988776543333 33466789999999999887653 344566777788889889999999999988742
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHH
Q 037414 335 DFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYV 412 (577)
Q Consensus 335 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 412 (577)
-++.|+...+-|.+.|-+.|+-.+|.+..-.- ..-| |..+..-|...|....-+++++..|+++.-..|+......
T Consensus 587 --lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwql 664 (840)
T KOG2003|consen 587 --LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQL 664 (840)
T ss_pred --cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHH
Confidence 34556888999999999999999999875443 3334 5666666777888888899999999999888888766566
Q ss_pred HHHHHHhccCChhHHHHHHHHHhhC
Q 037414 413 LLSNVYANAGRWQDVAKIRDLMTRR 437 (577)
Q Consensus 413 ~l~~~~~~~g~~~~A~~~~~~m~~~ 437 (577)
.+..++.+.|++.+|..+++...++
T Consensus 665 miasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 665 MIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHh
Confidence 6667788999999999999998764
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.6e-12 Score=85.59 Aligned_cols=50 Identities=26% Similarity=0.567 Sum_probs=45.5
Q ss_pred CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhc
Q 037414 121 RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRD 170 (577)
Q Consensus 121 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 170 (577)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||++++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68889999999999999999999999999999999999999999998874
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.24 E-value=8.4e-09 Score=104.68 Aligned_cols=247 Identities=17% Similarity=0.160 Sum_probs=165.4
Q ss_pred cchHHHHHHHHhcCCChHHHHHHHHHHHHc-----CC-CCcH-HHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHH
Q 037414 158 SYTLPFVIRACRDRKDIVMGRLIHDIVLKS-----GL-DIDQ-FVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM 230 (577)
Q Consensus 158 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g~-~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 230 (577)
..+...+...|...|+++.|..++++.++. |. .|.+ ...+.+...|...+++++|..+|+++..--..+
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~---- 274 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV---- 274 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh----
Confidence 346667888899999999999999987765 21 2232 333457778999999999999998775310000
Q ss_pred HhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHhhhCC-CCCCHH-H
Q 037414 231 IGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR-VLPNRI-T 308 (577)
Q Consensus 231 i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~-t 308 (577)
.|...+--..+++.|...|.+.|++++|...++. |++++++ ..| ..|... -
T Consensus 275 -~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~------------------------Al~I~~~--~~~~~~~~v~~~ 327 (508)
T KOG1840|consen 275 -FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCER------------------------ALEIYEK--LLGASHPEVAAQ 327 (508)
T ss_pred -cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHH------------------------HHHHHHH--hhccChHHHHHH
Confidence 0000111234566677777888888777766543 3333333 111 122222 3
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhhHhcC--CCC----CHHHHHHHHHHHHHcCCHHHHHHHHHhC---------CCCCC
Q 037414 309 FVSLLYACSHTGLVEEGLRLFSSMWDDFA--VRP----DVKHYTCMVDLLGRAGRLDEALKLIESM---------SVEKD 373 (577)
Q Consensus 309 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~ 373 (577)
++.+...|...+.+++|..+++...+.+. +.+ ...+++.|...|...|++++|++++++. +..+.
T Consensus 328 l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~ 407 (508)
T KOG1840|consen 328 LSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYG 407 (508)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChh
Confidence 44555667777777777777776654332 112 1467888889999999999999988876 11222
Q ss_pred -HhHHHHHHHHHHhcCCHHHHHHHHHHHHh----cCCC---CchhHHHHHHHHhccCChhHHHHHHHHHh
Q 037414 374 -EGLWGALLGACRIHKNVDLAEMAAKSLLE----RQPQ---NPGHYVLLSNVYANAGRWQDVAKIRDLMT 435 (577)
Q Consensus 374 -~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 435 (577)
...++.|...|.+.++.++|.++|.+... .+|+ ...+|..|+..|.+.|++++|.++.+...
T Consensus 408 ~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 408 VGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 33677788889999999989888887643 3444 44678899999999999999999988775
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.22 E-value=8e-09 Score=95.07 Aligned_cols=283 Identities=13% Similarity=0.122 Sum_probs=206.5
Q ss_pred CCChHHHHHHHhcCCCCCcchH---HHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcc------hHHHHHHHHhcCCChH
Q 037414 105 HKALTDAHALFNGMKERDSVSW---SVMVGGFSKVADFINCFETFREFIRCGMQLDSY------TLPFVIRACRDRKDIV 175 (577)
Q Consensus 105 ~g~~~~A~~~f~~m~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------t~~~ll~~~~~~~~~~ 175 (577)
..+.++|..+|-+|.+-|..++ -+|.+.|-+.|..++|+.+-+.+.++ ||.. ..-.|..-|-..|-+|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 4678999999999987665554 46778889999999999999988875 4422 2334455577889999
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCC
Q 037414 176 MGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGS 255 (577)
Q Consensus 176 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~ 255 (577)
.|+.+|..+.+.| .--.....-|+..|-+..++++|.++-+++..-+.-.++.-| ...|.-|...+....+
T Consensus 125 RAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eI--------AqfyCELAq~~~~~~~ 195 (389)
T COG2956 125 RAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEI--------AQFYCELAQQALASSD 195 (389)
T ss_pred HHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHH--------HHHHHHHHHHHhhhhh
Confidence 9999999988755 334567788999999999999999988877654433333322 2456677777778889
Q ss_pred HHHHHHHHHhccCCC---hhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 037414 256 IDSAREIFDRMRQKN---VISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSM 332 (577)
Q Consensus 256 ~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 332 (577)
++.|..++.+..+.| +..--.+...+...|++++|.+.++...+.+..--..+...|..+|.+.|+.+++...+..+
T Consensus 196 ~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~ 275 (389)
T COG2956 196 VDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRA 275 (389)
T ss_pred HHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 999999999887533 33344456788899999999999999998865555667888999999999999999999988
Q ss_pred hHhcCCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHhCCCCCCHhHHHHHHHHHHhc---CCHHHHHHHHHHHHh
Q 037414 333 WDDFAVRPDVKHYTCMVDLLGRAGRLDEALK-LIESMSVEKDEGLWGALLGACRIH---KNVDLAEMAAKSLLE 402 (577)
Q Consensus 333 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~-~~~~m~~~p~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~ 402 (577)
.+. .++...-..+.+.-....-.+.|.. +.+.+..+|+...+..|+..-... |...+....++.|..
T Consensus 276 ~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 276 MET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred HHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 653 3444444455554444444555554 455567789999999999875433 334555555666654
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.5e-09 Score=109.24 Aligned_cols=246 Identities=13% Similarity=0.087 Sum_probs=137.6
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHhcCCCC----CcchHHHHHHHHHhCCChhHHHHHHHHHHHCC
Q 037414 78 QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKER----DSVSWSVMVGGFSKVADFINCFETFREFIRCG 153 (577)
Q Consensus 78 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 153 (577)
.++..+...|+.|+.++|.+||.-|+..|+.+.|- +|.-|.-+ +...++.++.+..+.++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 35666778899999999999999999999999888 88877654 4556888888888888776665
Q ss_pred CCCCcchHHHHHHHHhcCCChHH---HHHHHHHHHH----cCCC-Cc-------------HHHHHHHHHHHHhCCCHHHH
Q 037414 154 MQLDSYTLPFVIRACRDRKDIVM---GRLIHDIVLK----SGLD-ID-------------QFVCAALVDMYAKCKVIDDA 212 (577)
Q Consensus 154 ~~p~~~t~~~ll~~~~~~~~~~~---a~~~~~~~~~----~g~~-~~-------------~~~~~~li~~~~~~g~~~~A 212 (577)
.|...||+.|+.+|+..||+.. .++.+..+.. .|+- +. ..-...++....-.|.++.+
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaql 158 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQL 158 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHH
Confidence 6788889999999999888654 2332222221 1211 00 11112334445556777777
Q ss_pred HHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHH-hcCCHHHHHHHHHhccC-CChhhHHHHHHHHHHcCChHHH
Q 037414 213 RQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYA-KCGSIDSAREIFDRMRQ-KNVISWSAMIAAYGYHGQGKKA 290 (577)
Q Consensus 213 ~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~-~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A 290 (577)
.+++..++... |+. |..+ .++-.. ....+++-...-....+ ++..+|.+.+..-..+|+.+.|
T Consensus 159 lkll~~~Pvsa---~~~--------p~~v----fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~A 223 (1088)
T KOG4318|consen 159 LKLLAKVPVSA---WNA--------PFQV----FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGA 223 (1088)
T ss_pred HHHHhhCCccc---ccc--------hHHH----HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhH
Confidence 77777766311 100 0000 011111 11112222222222222 5555555555555555555555
Q ss_pred HHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHH
Q 037414 291 LDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGR 354 (577)
Q Consensus 291 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 354 (577)
..++.+|.+.|++.+..-|-.|+-+ .++..-+..++..|. ..|+.|+.+|+...+-.+..
T Consensus 224 k~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmq-e~gv~p~seT~adyvip~l~ 283 (1088)
T KOG4318|consen 224 KNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQ-EKGVQPGSETQADYVIPQLS 283 (1088)
T ss_pred HHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHH-HhcCCCCcchhHHHHHhhhc
Confidence 5555555555555555555444433 444445555555553 23555555555544444433
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.1e-07 Score=99.02 Aligned_cols=361 Identities=11% Similarity=0.092 Sum_probs=262.6
Q ss_pred HHHHHhccChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHhcC---CCCCcchHHHHHHHHHhCCChh
Q 037414 64 ISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGM---KERDSVSWSVMVGGFSKVADFI 140 (577)
Q Consensus 64 ~~ll~a~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m---~~~~~~~~~~li~~~~~~g~~~ 140 (577)
+..+-+.++.+.|..++..+++.. +.+...|-.|...|-..|+.+++...+-.. ...|..-|-.+..-..+.|+++
T Consensus 146 AN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHH
Confidence 334555566999999999999987 678889999999999999999998876543 3347788999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHH----HHHHHHHhCCCHHHHHHHH
Q 037414 141 NCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCA----ALVDMYAKCKVIDDARQLF 216 (577)
Q Consensus 141 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~----~li~~~~~~g~~~~A~~~~ 216 (577)
+|.-.|.+.++.. +++...+---...|-+.|+...|...+.++.....+.|..-.. ..+..|...++-+.|.+.+
T Consensus 225 qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 225 QARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999999863 3354445555667889999999999999999875433433333 3455667777778888888
Q ss_pred hhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC----C----------------------C
Q 037414 217 DQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ----K----------------------N 270 (577)
Q Consensus 217 ~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~----~----------------------~ 270 (577)
+..... .+-.-+...++.++..|.+...++.|......+.. + +
T Consensus 304 e~~~s~-----------~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~ 372 (895)
T KOG2076|consen 304 EGALSK-----------EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGK 372 (895)
T ss_pred HHHHhh-----------ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCC
Confidence 776541 11123556778899999999999988877765532 1 1
Q ss_pred hhhHHH----HHHHHHHcCChHHHHHHHHHhhhCCC--CCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHH
Q 037414 271 VISWSA----MIAAYGYHGQGKKALDLFPMMLSSRV--LPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKH 344 (577)
Q Consensus 271 ~~~~~~----li~~~~~~g~~~~A~~l~~~m~~~g~--~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~ 344 (577)
..+|.. +.-++......+....+........+ .-+...|.-+..++...|.+.+|..+|..+... ...-+...
T Consensus 373 ~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~-~~~~~~~v 451 (895)
T KOG2076|consen 373 ELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNR-EGYQNAFV 451 (895)
T ss_pred CCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcC-ccccchhh
Confidence 112221 22233344444444444555555553 334567888999999999999999999999754 22334778
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-hHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---------CCCchhHHH
Q 037414 345 YTCMVDLLGRAGRLDEALKLIESM-SVEKDE-GLWGALLGACRIHKNVDLAEMAAKSLLERQ---------PQNPGHYVL 413 (577)
Q Consensus 345 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---------p~~~~~~~~ 413 (577)
|--+..+|...|..++|.+.|+.. ...|+. ..--+|-..+.+.|+.++|.+.++.+.--+ +++......
T Consensus 452 w~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~ 531 (895)
T KOG2076|consen 452 WYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAH 531 (895)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHH
Confidence 999999999999999999999988 556643 355566677899999999999998876322 222344566
Q ss_pred HHHHHhccCChhHHHHHHHHHhhCC
Q 037414 414 LSNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 414 l~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
....|...|+.++=..+-..|....
T Consensus 532 r~d~l~~~gk~E~fi~t~~~Lv~~~ 556 (895)
T KOG2076|consen 532 RCDILFQVGKREEFINTASTLVDDF 556 (895)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 7788899999998777777776544
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.5e-09 Score=111.49 Aligned_cols=258 Identities=14% Similarity=0.046 Sum_probs=184.5
Q ss_pred CcchHHHHHHHHh-----cCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH---------hCCCHHHHHHHHhhCCCC
Q 037414 157 DSYTLPFVIRACR-----DRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYA---------KCKVIDDARQLFDQMPTR 222 (577)
Q Consensus 157 ~~~t~~~ll~~~~-----~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~---------~~g~~~~A~~~~~~m~~~ 222 (577)
+...|...+.+-. ..+++++|.+.+++.++.. |.+...+..+..+|. ..+++++|...+++..+.
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 4445556666532 1245678999999998874 334566666666554 234588999999988765
Q ss_pred ChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC--C-ChhhHHHHHHHHHHcCChHHHHHHHHHhhh
Q 037414 223 DLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ--K-NVISWSAMIAAYGYHGQGKKALDLFPMMLS 299 (577)
Q Consensus 223 ~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 299 (577)
++ .+...+..+...+...|++++|...|++..+ | +...|..+...+...|++++|+..+++..+
T Consensus 334 dP-------------~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~ 400 (553)
T PRK12370 334 DH-------------NNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK 400 (553)
T ss_pred CC-------------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 43 2567788888999999999999999999865 4 356788889999999999999999999988
Q ss_pred CCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHh-
Q 037414 300 SRVLPNR-ITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP-DVKHYTCMVDLLGRAGRLDEALKLIESM-SVEKDEG- 375 (577)
Q Consensus 300 ~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~- 375 (577)
.. |+. ..+..++..+...|++++|...++++.+. ..| +...+..+...|...|++++|...++++ +..|+..
T Consensus 401 l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~ 476 (553)
T PRK12370 401 LD--PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLI 476 (553)
T ss_pred cC--CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHH
Confidence 64 432 23333444566689999999999988653 234 3455677888899999999999999987 4445444
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCCchhHHHHHHHHhccCChhHHHHHHHHHhhCC
Q 037414 376 LWGALLGACRIHKNVDLAEMAAKSLLERQ---PQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 376 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
.++.+...+...| +.|...++.+.+.. |.++. .+...|.-.|+.+.+... +++.+.|
T Consensus 477 ~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 477 AVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPG---LLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCch---HHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 4555555667666 47888788777653 44433 366667777787777766 7777654
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.9e-08 Score=95.41 Aligned_cols=277 Identities=13% Similarity=0.099 Sum_probs=210.3
Q ss_pred CCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHH
Q 037414 136 VADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQL 215 (577)
Q Consensus 136 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 215 (577)
.|+|.+|.++..+-.+.+-.| ...|..-..+....|+.+.+-+.+.++-+..-.++..++-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 699999999999877765443 2345555666788999999999999998874467788888888999999999999988
Q ss_pred HhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccCCCh-----------hhHHHHHHHHHHc
Q 037414 216 FDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNV-----------ISWSAMIAAYGYH 284 (577)
Q Consensus 216 ~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~~~li~~~~~~ 284 (577)
.+++.+.. +.++.+......+|.+.|++.....+...+.+... .+|+.++.-....
T Consensus 176 v~~ll~~~-------------pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~ 242 (400)
T COG3071 176 VDQLLEMT-------------PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDD 242 (400)
T ss_pred HHHHHHhC-------------cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhcc
Confidence 87776532 23677888999999999999999999999986322 3577676665555
Q ss_pred CChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 037414 285 GQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKL 364 (577)
Q Consensus 285 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 364 (577)
+..+.-...+++.... .+-++..-.+++.-+.+.|+.++|.++..+..++ +..|+.. .++ ...+-++...-.+.
T Consensus 243 ~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L~---~~~-~~l~~~d~~~l~k~ 316 (400)
T COG3071 243 NGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRLC---RLI-PRLRPGDPEPLIKA 316 (400)
T ss_pred ccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhHH---HHH-hhcCCCCchHHHHH
Confidence 5555555566655443 4555556667788888999999999999998876 6666621 122 23344554444444
Q ss_pred H----HhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHh
Q 037414 365 I----ESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMT 435 (577)
Q Consensus 365 ~----~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 435 (577)
. ...+..| ..+.+|...|.+++.+.+|...|+..++..|.. ..|..+..++.+.|+.++|.+.+++-.
T Consensus 317 ~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~-~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 317 AEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSA-SDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh-hhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 3 3334344 678899999999999999999999999888874 689999999999999999999998765
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.1e-07 Score=91.79 Aligned_cols=357 Identities=13% Similarity=0.118 Sum_probs=188.4
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHhcCCC--CC-cchHHHHHHHHHhCCChhHHHHHHHHH
Q 037414 73 IFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKE--RD-SVSWSVMVGGFSKVADFINCFETFREF 149 (577)
Q Consensus 73 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m 149 (577)
.+.|+.||+..+... ..+...|-.-+.+=.++..+..|+.+|++... |- -..|--.+-.=-..|+...|.++|++-
T Consensus 89 ~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW 167 (677)
T KOG1915|consen 89 IQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERW 167 (677)
T ss_pred HHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 667888888877765 55677777778888888888888888887543 21 112433333334457778888888777
Q ss_pred HHCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCC---CChhH
Q 037414 150 IRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPT---RDLVT 226 (577)
Q Consensus 150 ~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~ 226 (577)
.+ ..|+...|.+.++.=.+-+.++.|+.++++.+-. .|++..|--....-.++|....|..+|+...+ .+-..
T Consensus 168 ~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~ 243 (677)
T KOG1915|consen 168 ME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEA 243 (677)
T ss_pred Hc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHH
Confidence 65 4678888888888777777888888888777653 47777777777777778887777777766532 11100
Q ss_pred ---HHHHHhc------------------CCCCcc--hhhHHHHHHHHHhcCCHHHHHHH--------HHhccCC---Chh
Q 037414 227 ---WTVMIGA------------------NKFLLD--VILGTAVIDMYAKCGSIDSAREI--------FDRMRQK---NVI 272 (577)
Q Consensus 227 ---~~~~i~~------------------~g~~~~--~~~~~~Li~~~~~~g~~~~A~~~--------~~~~~~~---~~~ 272 (577)
+.+...- ..++.+ ..+|..+...=-+-|+...-..+ ++.+... |-.
T Consensus 244 e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYD 323 (677)
T KOG1915|consen 244 EILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYD 323 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCch
Confidence 0000000 011111 12222222222222222111111 1111111 222
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHH-------HHHHHHHHH---hccCCHHHHHHHHHHhhHhcCCCCCH
Q 037414 273 SWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRI-------TFVSLLYAC---SHTGLVEEGLRLFSSMWDDFAVRPDV 342 (577)
Q Consensus 273 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-------t~~~ll~a~---~~~g~~~~a~~~~~~m~~~~~~~p~~ 342 (577)
+|--.+..-...|+.+...++|++.+.. ++|-.. .|.-+=-+| ....+++.+.++++..++ -++...
T Consensus 324 sWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~--lIPHkk 400 (677)
T KOG1915|consen 324 SWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD--LIPHKK 400 (677)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hcCccc
Confidence 3444444444556666666666666543 444211 111111111 223455555555555542 122222
Q ss_pred HHHHHHHHH----HHHcCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 037414 343 KHYTCMVDL----LGRAGRLDEALKLIESM-SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNV 417 (577)
Q Consensus 343 ~~~~~li~~----~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 417 (577)
.|+.-+=-+ -.++.++..|.+++... |.-|-..++...|..-.+.++++....++++.++-+|.+..+|.-....
T Consensus 401 FtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaEl 480 (677)
T KOG1915|consen 401 FTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAEL 480 (677)
T ss_pred chHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHH
Confidence 333322222 22455555555555444 5455555555555555555555555555555555555555555555555
Q ss_pred HhccCChhHHHHHHHHHhhC
Q 037414 418 YANAGRWQDVAKIRDLMTRR 437 (577)
Q Consensus 418 ~~~~g~~~~A~~~~~~m~~~ 437 (577)
-...|+++.|..+|....+.
T Consensus 481 E~~LgdtdRaRaifelAi~q 500 (677)
T KOG1915|consen 481 ETSLGDTDRARAIFELAISQ 500 (677)
T ss_pred HHHhhhHHHHHHHHHHHhcC
Confidence 55555555555555554443
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.15 E-value=9.8e-09 Score=96.20 Aligned_cols=196 Identities=13% Similarity=0.020 Sum_probs=114.4
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 037414 123 SVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDM 202 (577)
Q Consensus 123 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 202 (577)
...+..+...+...|++++|.+.|++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 3456666677777777777777777776542 2234455666666777777777777777776654 3445566667777
Q ss_pred HHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHH
Q 037414 203 YAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ---KNVISWSAMIA 279 (577)
Q Consensus 203 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~ 279 (577)
|...|++++|.+.|++...... .+.....+..+...|...|++++|...|++..+ .+...|..+..
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~ 177 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPL-----------YPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAE 177 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccc-----------cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHH
Confidence 7777777777777776543210 011223444455556666666666666665543 22344555555
Q ss_pred HHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 037414 280 AYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSM 332 (577)
Q Consensus 280 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 332 (577)
.+...|++++|...+++.... .+.+...+..+...+...|+.++|..+.+.+
T Consensus 178 ~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 178 LYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 666666666666666665544 2233344444445555555666655555544
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.14 E-value=9.9e-08 Score=92.21 Aligned_cols=368 Identities=12% Similarity=0.143 Sum_probs=264.1
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHhcCC--CCCcchHHHHHHHHHhCCChhHHHHHHHHHH
Q 037414 73 IFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK--ERDSVSWSVMVGGFSKVADFINCFETFREFI 150 (577)
Q Consensus 73 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 150 (577)
+..|+.+++..+..- +.--..|-..+.+=-..|++..|+++|++-. +|+...|++.|.-=.+-...+.|..++++..
T Consensus 123 vNhARNv~dRAvt~l-PRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV 201 (677)
T KOG1915|consen 123 VNHARNVWDRAVTIL-PRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFV 201 (677)
T ss_pred HhHHHHHHHHHHHhc-chHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 778888888887653 3333455555666667788889999988754 4788889998888888888888888888887
Q ss_pred HCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHc-CC-CCcHHHHHHHHHHHHhCCCHHHHHHHHhh----CCCCCh
Q 037414 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKS-GL-DIDQFVCAALVDMYAKCKVIDDARQLFDQ----MPTRDL 224 (577)
Q Consensus 151 ~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~~~ 224 (577)
- +.|+..+|.-....=-+.|....+++++...++. |- ..+...+.+....-.++..++.|.-+|.- +++...
T Consensus 202 ~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~ra 279 (677)
T KOG1915|consen 202 L--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRA 279 (677)
T ss_pred e--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccH
Confidence 6 4688888887777777888888888888877764 11 11234445555555566677777776643 332110
Q ss_pred -----------------hHHHHHHhc----------CCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC--CChh---
Q 037414 225 -----------------VTWTVMIGA----------NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ--KNVI--- 272 (577)
Q Consensus 225 -----------------~~~~~~i~~----------~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~--~~~~--- 272 (577)
..-...|.+ ...+-|-.+|--.+..-...|+.+...++|++... |...
T Consensus 280 eeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr 359 (677)
T KOG1915|consen 280 EELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKR 359 (677)
T ss_pred HHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHH
Confidence 000011111 44555677788888888889999999999998764 2221
Q ss_pred hHHHHH--------HHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHH----hccCCHHHHHHHHHHhhHhcCCCC
Q 037414 273 SWSAMI--------AAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYAC----SHTGLVEEGLRLFSSMWDDFAVRP 340 (577)
Q Consensus 273 ~~~~li--------~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~----~~~g~~~~a~~~~~~m~~~~~~~p 340 (577)
.|.--| -.-....+.+.+.++|+..++. ++-...||.-+=-.| .+..++..|.+++...+ |.-|
T Consensus 360 ~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI---G~cP 435 (677)
T KOG1915|consen 360 YWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI---GKCP 435 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh---ccCC
Confidence 122211 1123467899999999999884 454566776554433 45678999999999887 8899
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc--hhHHHHHH
Q 037414 341 DVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNP--GHYVLLSN 416 (577)
Q Consensus 341 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~--~~~~~l~~ 416 (577)
...++...|+.=.+.+.+|...+++++. ...| |-.+|......-...|+.+.|..+|+-++.....+. ..|...+.
T Consensus 436 K~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYId 515 (677)
T KOG1915|consen 436 KDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYID 515 (677)
T ss_pred chhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhh
Confidence 9999999999999999999999999987 5566 667999998888999999999999999887653322 34556666
Q ss_pred HHhccCChhHHHHHHHHHhhCCCccCCceeEEEE
Q 037414 417 VYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEV 450 (577)
Q Consensus 417 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~s~~~~ 450 (577)
.-...|.++.|..+++.+.++.-.. -.|+..
T Consensus 516 FEi~~~E~ekaR~LYerlL~rt~h~---kvWisF 546 (677)
T KOG1915|consen 516 FEIEEGEFEKARALYERLLDRTQHV---KVWISF 546 (677)
T ss_pred hhhhcchHHHHHHHHHHHHHhcccc---hHHHhH
Confidence 6678999999999999998765321 157653
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.11 E-value=2e-08 Score=99.15 Aligned_cols=250 Identities=13% Similarity=0.044 Sum_probs=179.6
Q ss_pred HhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHH
Q 037414 168 CRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVI 247 (577)
Q Consensus 168 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li 247 (577)
|-...++.+..++.+.+.+.. ++....+..-|..+...|+..+-..+=.++. ...|....+|-++.
T Consensus 254 ~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV-------------~~yP~~a~sW~aVg 319 (611)
T KOG1173|consen 254 LYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLV-------------DLYPSKALSWFAVG 319 (611)
T ss_pred HHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHH-------------HhCCCCCcchhhHH
Confidence 344455555555555555442 4444444444455555555443333322222 22334566788888
Q ss_pred HHHHhcCCHHHHHHHHHhccCCC---hhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHH
Q 037414 248 DMYAKCGSIDSAREIFDRMRQKN---VISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEE 324 (577)
Q Consensus 248 ~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 324 (577)
--|.-.|+..+|++.|.+...-| ...|-.....|+-.|..++|+..+...-+. ++-...-+.-+.--|.+.++.+.
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHH
Confidence 88888999999999999876533 357999999999999999999988876654 11122222334456788899999
Q ss_pred HHHHHHHhhHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhCC-----C---CC-CHhHHHHHHHHHHhcCCHHHHH
Q 037414 325 GLRLFSSMWDDFAVRPD-VKHYTCMVDLLGRAGRLDEALKLIESMS-----V---EK-DEGLWGALLGACRIHKNVDLAE 394 (577)
Q Consensus 325 a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~---~p-~~~~~~~ll~~~~~~g~~~~a~ 394 (577)
|.++|.+.. ++-|+ +...+-+.-..-..+.+.+|..+|+..- + .+ -..+++.|..+|++.+.+++|+
T Consensus 399 Ae~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 399 AEKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 999999886 56664 5555555555667788999999988761 1 11 2346888889999999999999
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHh
Q 037414 395 MAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMT 435 (577)
Q Consensus 395 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 435 (577)
..+++.+.+.|.++.+|..+.-+|...|+++.|.+.|.+-.
T Consensus 476 ~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 476 DYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998765
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.2e-08 Score=106.25 Aligned_cols=258 Identities=10% Similarity=-0.027 Sum_probs=179.6
Q ss_pred CcchHHHHHHHHHh-----CCChhHHHHHHHHHHHCCCCCCc-chHHHHHHHHh---------cCCChHHHHHHHHHHHH
Q 037414 122 DSVSWSVMVGGFSK-----VADFINCFETFREFIRCGMQLDS-YTLPFVIRACR---------DRKDIVMGRLIHDIVLK 186 (577)
Q Consensus 122 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~---------~~~~~~~a~~~~~~~~~ 186 (577)
+...|...+.+-.. .+..++|+++|++..+. .|+. ..|..+..++. ..+++++|...++++++
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 44556666665322 23467899999998874 5654 34444443332 23457899999999998
Q ss_pred cCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhc
Q 037414 187 SGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRM 266 (577)
Q Consensus 187 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~ 266 (577)
.. +.+...+..+..++...|++++|...|++..+.++ .+...+..+...|...|++++|...+++.
T Consensus 333 ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P-------------~~~~a~~~lg~~l~~~G~~~eAi~~~~~A 398 (553)
T PRK12370 333 LD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSP-------------ISADIKYYYGWNLFMAGQLEEALQTINEC 398 (553)
T ss_pred cC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 75 55788888899999999999999999999876432 24567788899999999999999999998
Q ss_pred cC--CChh-hHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC-
Q 037414 267 RQ--KNVI-SWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPN-RITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD- 341 (577)
Q Consensus 267 ~~--~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~- 341 (577)
.+ |+.. .+..++..+...|++++|+..+++..... .|+ ...+..+..++...|+.++|...+..+.. ..|+
T Consensus 399 l~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~---~~~~~ 474 (553)
T PRK12370 399 LKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEIST---QEITG 474 (553)
T ss_pred HhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh---ccchh
Confidence 75 4322 33444555777899999999999987653 343 44466677788899999999999988753 2444
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 037414 342 VKHYTCMVDLLGRAGRLDEALKLIESM----SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQ 404 (577)
Q Consensus 342 ~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 404 (577)
....+.+...|...| ++|...++.+ ...|....+.. ..+.-+|+.+.+... +++.+.+
T Consensus 475 ~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 475 LIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLP--LVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHH--HHHHHHhhhHHHHHH-HHhhccc
Confidence 344455556677777 4777766665 23344344433 335556777777666 7766654
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.8e-08 Score=92.70 Aligned_cols=230 Identities=12% Similarity=0.054 Sum_probs=189.8
Q ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC--C
Q 037414 192 DQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ--K 269 (577)
Q Consensus 192 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~--~ 269 (577)
|..--+-+..+|.+.|.+.+|.+.|+.-.+. .|.+.+|..|-..|.+..+.+.|+.+|.+-.+ |
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--------------~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP 287 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--------------FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFP 287 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--------------CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCC
Confidence 4444467889999999999999999876542 35667888899999999999999999998875 5
Q ss_pred ChhhH-HHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHH
Q 037414 270 NVISW-SAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCM 348 (577)
Q Consensus 270 ~~~~~-~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 348 (577)
..+|| .-+...+-..++.++|.++|+...+. -+.+......+...|.-.++++-|..+++.+++- |+ .+.+.|+.+
T Consensus 288 ~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~-~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~-~speLf~Ni 364 (478)
T KOG1129|consen 288 FDVTYLLGQARIHEAMEQQEDALQLYKLVLKL-HPINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GA-QSPELFCNI 364 (478)
T ss_pred chhhhhhhhHHHHHHHHhHHHHHHHHHHHHhc-CCccceeeeeeeeccccCCChHHHHHHHHHHHHh-cC-CChHHHhhH
Confidence 44444 45778888899999999999998876 2445566667777888889999999999999864 65 456677777
Q ss_pred HHHHHHcCCHHHHHHHHHhC---CCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCC
Q 037414 349 VDLLGRAGRLDEALKLIESM---SVEKD--EGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGR 423 (577)
Q Consensus 349 i~~~~~~g~~~~A~~~~~~m---~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 423 (577)
.-.+.-.+++|-++.-|++. .-+|+ ..+|-.+.......||+..|.+.|+-.+..+|++..+++.|.-.-.+.|+
T Consensus 365 gLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~ 444 (478)
T KOG1129|consen 365 GLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGD 444 (478)
T ss_pred HHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCc
Confidence 77777789999999888876 22344 34898898889999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhhCC
Q 037414 424 WQDVAKIRDLMTRRR 438 (577)
Q Consensus 424 ~~~A~~~~~~m~~~g 438 (577)
+++|..++....+..
T Consensus 445 i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 445 ILGARSLLNAAKSVM 459 (478)
T ss_pred hHHHHHHHHHhhhhC
Confidence 999999998876544
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.1e-07 Score=96.70 Aligned_cols=237 Identities=14% Similarity=0.113 Sum_probs=157.2
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHC-----C-CCCCcchH-HHHHHHHhcCCChHHHHHHHHHHHHc-----C--CCC
Q 037414 126 WSVMVGGFSKVADFINCFETFREFIRC-----G-MQLDSYTL-PFVIRACRDRKDIVMGRLIHDIVLKS-----G--LDI 191 (577)
Q Consensus 126 ~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~-----g--~~~ 191 (577)
...+...|...|+++.|..+++...+. | ..|...+. +.+...|...+++++|..+|+.++.. | .+.
T Consensus 202 ~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~ 281 (508)
T KOG1840|consen 202 LRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPA 281 (508)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHH
Confidence 444888999999999999999888764 2 12343333 33556788899999999999988763 3 122
Q ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhcc---C
Q 037414 192 DQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMR---Q 268 (577)
Q Consensus 192 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~---~ 268 (577)
-..+++.|..+|.+.|++++|...+++..+ +++... .
T Consensus 282 va~~l~nLa~ly~~~GKf~EA~~~~e~Al~----------------------------------------I~~~~~~~~~ 321 (508)
T KOG1840|consen 282 VAATLNNLAVLYYKQGKFAEAEEYCERALE----------------------------------------IYEKLLGASH 321 (508)
T ss_pred HHHHHHHHHHHHhccCChHHHHHHHHHHHH----------------------------------------HHHHhhccCh
Confidence 246677788899999999999988765432 222211 1
Q ss_pred CChh-hHHHHHHHHHHcCChHHHHHHHHHhhhC---CCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHhhHhc----
Q 037414 269 KNVI-SWSAMIAAYGYHGQGKKALDLFPMMLSS---RVLPN----RITFVSLLYACSHTGLVEEGLRLFSSMWDDF---- 336 (577)
Q Consensus 269 ~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---- 336 (577)
+.+. .++.++..+...+++++|..+++...+. -+.++ ..+++.+...|.+.|++++|.++|++.++..
T Consensus 322 ~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~ 401 (508)
T KOG1840|consen 322 PEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELL 401 (508)
T ss_pred HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcc
Confidence 1111 2334445555556666666555544321 12222 2467777777777888888877777776532
Q ss_pred C-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhC--------CCCCCHh-HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037414 337 A-VRPD-VKHYTCMVDLLGRAGRLDEALKLIESM--------SVEKDEG-LWGALLGACRIHKNVDLAEMAAKSLLE 402 (577)
Q Consensus 337 ~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~ 402 (577)
+ ..+. ...++-|...|.+.++.++|.++|.+. +-.|+.. +|..|...|...|+++.|+++.+.+..
T Consensus 402 ~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 402 GKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred cCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 1 1122 355667777788888888887777665 2345544 899999999999999999999988763
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.7e-06 Score=82.56 Aligned_cols=268 Identities=10% Similarity=0.028 Sum_probs=177.5
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchH-HHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 037414 122 DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTL-PFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALV 200 (577)
Q Consensus 122 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 200 (577)
|+.....+...+...|+.++|+..|+..+.. .|+..+- ..-.-.+.+.|+.+....+...+.... .-+...|-.-.
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~ 307 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHA 307 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhh
Confidence 6666777888888888888888888877653 3433221 111122345667776666666554432 12223333333
Q ss_pred HHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHH
Q 037414 201 DMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ---KNVISWSAM 277 (577)
Q Consensus 201 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l 277 (577)
.......++..|..+-++..+.+.. +...+-.-...+...|+.++|.-.|+.... -+..+|..+
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~~~r-------------~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL 374 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDSEPR-------------NHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGL 374 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhccCcc-------------cchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHH
Confidence 4444566777777777766554332 222333335566778888888888887653 467788899
Q ss_pred HHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHH-HHHh-ccCCHHHHHHHHHHhhHhcCCCCC-HHHHHHHHHHHHH
Q 037414 278 IAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLL-YACS-HTGLVEEGLRLFSSMWDDFAVRPD-VKHYTCMVDLLGR 354 (577)
Q Consensus 278 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~a~~-~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~ 354 (577)
+..|...|.+.+|..+-+...+. ++.+..+...+- ..|. ...--++|.+++++.+ .+.|+ ....+.+...+..
T Consensus 375 ~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~ 450 (564)
T KOG1174|consen 375 FHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQV 450 (564)
T ss_pred HHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHh
Confidence 99999999988888776665443 333444544331 2222 2223477888888775 45666 4556677788888
Q ss_pred cCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 037414 355 AGRLDEALKLIESM-SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPG 409 (577)
Q Consensus 355 ~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 409 (577)
.|+.+++..++++. ...||....+.|...++..+.+++|...|..++..+|++..
T Consensus 451 Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~ 506 (564)
T KOG1174|consen 451 EGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKR 506 (564)
T ss_pred hCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchH
Confidence 89999999988886 56788888888888888888999999999999999988754
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=8.9e-08 Score=93.12 Aligned_cols=191 Identities=14% Similarity=0.099 Sum_probs=142.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCC-HHHHHHHHHH
Q 037414 240 VILGTAVIDMYAKCGSIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPN-RITFVSLLYA 315 (577)
Q Consensus 240 ~~~~~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a 315 (577)
...|..+...|...|+.++|...|++..+ .+...|+.+...+...|++++|.+.|++..+. .|+ ..++..+..+
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~ 141 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIA 141 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 45677888899999999999999998864 45678999999999999999999999999875 454 5677788888
Q ss_pred HhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHhHHHHHHHHHHhcCCHHHH
Q 037414 316 CSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM--SVEKDEGLWGALLGACRIHKNVDLA 393 (577)
Q Consensus 316 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a 393 (577)
+...|++++|.+.|+...+ ..|+..........+...++.++|...|++. ...|+...| .+ .....|+...+
T Consensus 142 l~~~g~~~eA~~~~~~al~---~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~-~~--~~~~lg~~~~~ 215 (296)
T PRK11189 142 LYYGGRYELAQDDLLAFYQ---DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWGW-NI--VEFYLGKISEE 215 (296)
T ss_pred HHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccHH-HH--HHHHccCCCHH
Confidence 8999999999999999975 3555432222233345678899999999665 223333222 22 22334555443
Q ss_pred HHHHHHHH-------hcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCCC
Q 037414 394 EMAAKSLL-------ERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRL 439 (577)
Q Consensus 394 ~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 439 (577)
..++.+. +..|..+.+|..+...|.+.|++++|...|++..+.++
T Consensus 216 -~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 216 -TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred -HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 3444444 34456678999999999999999999999999886553
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.94 E-value=9.8e-06 Score=77.47 Aligned_cols=325 Identities=12% Similarity=0.042 Sum_probs=173.0
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHhcCCCCC-cchHHHHHHHHHhCCC--hhH-------------HHHHHHHHHHCC---
Q 037414 93 IVANKLLYIYALHKALTDAHALFNGMKERD-SVSWSVMVGGFSKVAD--FIN-------------CFETFREFIRCG--- 153 (577)
Q Consensus 93 ~~~~~li~~~~~~g~~~~A~~~f~~m~~~~-~~~~~~li~~~~~~g~--~~~-------------A~~~~~~m~~~g--- 153 (577)
..---.+..|.-.++-+.|.....+.+.+- ..--|.|+.-+-+.|. .++ |++.+.-..+.+
T Consensus 98 e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~g 177 (564)
T KOG1174|consen 98 EQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVNG 177 (564)
T ss_pred HHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhcc
Confidence 334456777777888889998888887653 3334444443333332 111 222222222222
Q ss_pred ------------CCCCcchHHHHHHHHhc--CCChHHHHHHHHHHHH-cCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhh
Q 037414 154 ------------MQLDSYTLPFVIRACRD--RKDIVMGRLIHDIVLK-SGLDIDQFVCAALVDMYAKCKVIDDARQLFDQ 218 (577)
Q Consensus 154 ------------~~p~~~t~~~ll~~~~~--~~~~~~a~~~~~~~~~-~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 218 (577)
+.|+..+....+.+++. .++-..+.+.+-.+.+ .-++.++.....+.+.|...|+.++|...|++
T Consensus 178 ~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~ 257 (564)
T KOG1174|consen 178 NEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSS 257 (564)
T ss_pred hhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHH
Confidence 23444455555555433 3343444444443333 33677889999999999999999999999999
Q ss_pred CCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccCC---ChhhHHHHHHHHHHcCChHHHHHHHH
Q 037414 219 MPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQK---NVISWSAMIAAYGYHGQGKKALDLFP 295 (577)
Q Consensus 219 m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~ 295 (577)
...-|+.+..+| | .|..| +...|+.++-..+...+... ....|-.-....-...+++.|+.+-.
T Consensus 258 ~~~~dpy~i~~M--------D--~Ya~L---L~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~e 324 (564)
T KOG1174|consen 258 TLCANPDNVEAM--------D--LYAVL---LGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVE 324 (564)
T ss_pred HhhCChhhhhhH--------H--HHHHH---HHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHH
Confidence 887776655444 1 22222 33455555555555544322 22334333444444556666666666
Q ss_pred HhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCC
Q 037414 296 MMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP-DVKHYTCMVDLLGRAGRLDEALKLIESM--SVEK 372 (577)
Q Consensus 296 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p 372 (577)
+.++.. +-+...|..--.++...+++++|.-.|+... .+.| +...|..|+..|...|++.||.-+-+.. .+..
T Consensus 325 K~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq---~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~ 400 (564)
T KOG1174|consen 325 KCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQ---MLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQN 400 (564)
T ss_pred HHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHH---hcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhc
Confidence 655432 1122233333344555666666666666653 3443 4566666666666666666655433322 1112
Q ss_pred CHhHHHHHH-HHH-HhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHH
Q 037414 373 DEGLWGALL-GAC-RIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLM 434 (577)
Q Consensus 373 ~~~~~~~ll-~~~-~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 434 (577)
+..+...+. ..| -...--++|..++++.++++|.-..+.+.+...+...|+.+++..+++.-
T Consensus 401 sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~ 464 (564)
T KOG1174|consen 401 SARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKH 464 (564)
T ss_pred chhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHH
Confidence 222332221 111 11122355666666666666665556666666666666666666655543
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=6.2e-08 Score=89.32 Aligned_cols=228 Identities=11% Similarity=0.055 Sum_probs=174.2
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchh
Q 037414 162 PFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVI 241 (577)
Q Consensus 162 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~ 241 (577)
+-+-++|.+.|-+.+|.+.++.-++. .|-+.||-.|-.+|.+..+++.|+.+|.+-.+. ++-|+.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-------------fP~~VT 291 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-------------FPFDVT 291 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-------------CCchhh
Confidence 34556677778888887777776665 455566777777888888888888887765542 233444
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhc
Q 037414 242 LGTAVIDMYAKCGSIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSH 318 (577)
Q Consensus 242 ~~~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 318 (577)
........+-..++.++|.++|+...+ .++.+..++..+|.-.++++-|+.+|+++.+.|+. +...|+.+.-+|.-
T Consensus 292 ~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~y 370 (478)
T KOG1129|consen 292 YLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLY 370 (478)
T ss_pred hhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHh
Confidence 555667777788888888888888765 45666777778888899999999999999999866 56678888888888
Q ss_pred cCCHHHHHHHHHHhhHhcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHH
Q 037414 319 TGLVEEGLRLFSSMWDDFAVRPD--VKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAE 394 (577)
Q Consensus 319 ~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~ 394 (577)
.+++|-+..-|+..+.. .-.|+ ..+|-.+-......|++.-|.+.|+-. ...| +...++.|.-.-.+.|+++.|.
T Consensus 371 aqQ~D~~L~sf~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Ar 449 (478)
T KOG1129|consen 371 AQQIDLVLPSFQRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGAR 449 (478)
T ss_pred hcchhhhHHHHHHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHH
Confidence 99999999888887643 33344 456777777778889999999999876 3234 4558888888889999999999
Q ss_pred HHHHHHHhcCCC
Q 037414 395 MAAKSLLERQPQ 406 (577)
Q Consensus 395 ~~~~~~~~~~p~ 406 (577)
.++..+....|.
T Consensus 450 sll~~A~s~~P~ 461 (478)
T KOG1129|consen 450 SLLNAAKSVMPD 461 (478)
T ss_pred HHHHHhhhhCcc
Confidence 999999888876
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.91 E-value=8.8e-07 Score=87.81 Aligned_cols=278 Identities=15% Similarity=0.058 Sum_probs=209.8
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 037414 122 DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVD 201 (577)
Q Consensus 122 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 201 (577)
++..--.-..-+-..+++.+..++++...+. .+++...+..-|..+...|+..+-..+=.++++. .|....+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHH
Confidence 3333444455677789999999999999886 4556677777777888888887776666677776 4667889999999
Q ss_pred HHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHH
Q 037414 202 MYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ---KNVISWSAMI 278 (577)
Q Consensus 202 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li 278 (577)
-|...|+..+|++.|.+...-|.. -...|-.+...|+-.|..|.|...+....+ .....+--+.
T Consensus 321 YYl~i~k~seARry~SKat~lD~~-------------fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlg 387 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPT-------------FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLG 387 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCcc-------------ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHH
Confidence 999999999999999887654321 244677789999999999999888876543 1111222244
Q ss_pred HHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhc-CCCC----CHHHHHHHHHHHH
Q 037414 279 AAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDF-AVRP----DVKHYTCMVDLLG 353 (577)
Q Consensus 279 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-~~~p----~~~~~~~li~~~~ 353 (577)
--|.+.++.+.|.+.|.+.... .+-|+...+-+.-..-..+.+.+|..+|+..+..- .+.+ ...+++-|..+|.
T Consensus 388 mey~~t~n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~R 466 (611)
T KOG1173|consen 388 MEYMRTNNLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYR 466 (611)
T ss_pred HHHHHhccHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHH
Confidence 5677889999999999988764 23455666666666667889999999999886311 1111 3456788889999
Q ss_pred HcCCHHHHHHHHHhC-CC-CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 037414 354 RAGRLDEALKLIESM-SV-EKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLS 415 (577)
Q Consensus 354 ~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 415 (577)
+.+++++|+..+++. .. ..|..++.++.-.+...|+++.|...|.+.+-+.|++..+-..|.
T Consensus 467 kl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 467 KLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLK 530 (611)
T ss_pred HHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 999999999999987 33 347789999999999999999999999999999999865444443
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.9e-07 Score=88.65 Aligned_cols=227 Identities=15% Similarity=0.029 Sum_probs=143.5
Q ss_pred CChHHHHHHHHHHHHcC-CCC--cHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHH
Q 037414 172 KDIVMGRLIHDIVLKSG-LDI--DQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVID 248 (577)
Q Consensus 172 ~~~~~a~~~~~~~~~~g-~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~ 248 (577)
+..+.+..-+.+++... ..| ....|..+...|.+.|+.++|...|++..+.+ +.+...|+.+..
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-------------P~~~~a~~~lg~ 106 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-------------PDMADAYNYLGI 106 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-------------CCCHHHHHHHHH
Confidence 34455555666666432 112 13456677777888888888888887765533 224667788888
Q ss_pred HHHhcCCHHHHHHHHHhccC--C-ChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHH
Q 037414 249 MYAKCGSIDSAREIFDRMRQ--K-NVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEG 325 (577)
Q Consensus 249 ~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 325 (577)
.|...|++++|...|++..+ | +...|..+...+...|++++|++.|++..+. .|+..........+...++.++|
T Consensus 107 ~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A 184 (296)
T PRK11189 107 YLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQA 184 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHH
Confidence 88888888888888888754 3 3567777888888889999999999888774 44432222222233456788899
Q ss_pred HHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHH--HHHHHhC-CC----CC-CHhHHHHHHHHHHhcCCHHHHHHHH
Q 037414 326 LRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEA--LKLIESM-SV----EK-DEGLWGALLGACRIHKNVDLAEMAA 397 (577)
Q Consensus 326 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A--~~~~~~m-~~----~p-~~~~~~~ll~~~~~~g~~~~a~~~~ 397 (577)
...|..... ...|+...+ .++.. ..|++.++ .+.+.+- .. .| ....|..+...+...|+.++|+..|
T Consensus 185 ~~~l~~~~~--~~~~~~~~~-~~~~~--~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~ 259 (296)
T PRK11189 185 KENLKQRYE--KLDKEQWGW-NIVEF--YLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALF 259 (296)
T ss_pred HHHHHHHHh--hCCccccHH-HHHHH--HccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 888876543 223333222 23332 34444333 3222221 11 12 2347888899999999999999999
Q ss_pred HHHHhcCCCCc-hhHHHHHHHH
Q 037414 398 KSLLERQPQNP-GHYVLLSNVY 418 (577)
Q Consensus 398 ~~~~~~~p~~~-~~~~~l~~~~ 418 (577)
+++++.+|++. ..-..++...
T Consensus 260 ~~Al~~~~~~~~e~~~~~~e~~ 281 (296)
T PRK11189 260 KLALANNVYNFVEHRYALLELA 281 (296)
T ss_pred HHHHHhCCchHHHHHHHHHHHH
Confidence 99999997543 3333344433
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.88 E-value=8e-07 Score=86.51 Aligned_cols=216 Identities=10% Similarity=0.011 Sum_probs=170.0
Q ss_pred hcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHH
Q 037414 169 RDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVID 248 (577)
Q Consensus 169 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~ 248 (577)
.-.|+.-.+.+-++..++.... +...|--+..+|....+.++-.+.|+....-|+. |..+|.--..
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-------------n~dvYyHRgQ 402 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-------------NPDVYYHRGQ 402 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-------------CCchhHhHHH
Confidence 3467888888999998887533 3344777888899999999999999988765432 5677888888
Q ss_pred HHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHH
Q 037414 249 MYAKCGSIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEG 325 (577)
Q Consensus 249 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 325 (577)
++.-.+++++|..=|++... .++..|-.+..+.-+.++++++...|++..+. ++--...|+.....+...+++++|
T Consensus 403 m~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A 481 (606)
T KOG0547|consen 403 MRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKA 481 (606)
T ss_pred HHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHH
Confidence 88889999999999999876 34566777777777888999999999999876 555667888889999999999999
Q ss_pred HHHHHHhhHhcCCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHH
Q 037414 326 LRLFSSMWDDFAVRPD---------VKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAE 394 (577)
Q Consensus 326 ~~~~~~m~~~~~~~p~---------~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~ 394 (577)
.+.|+..++ +.|+ +.+.-+++..-. .+++..|.+++++. .+.| ....+..|...-.+.|+.++|+
T Consensus 482 ~k~YD~ai~---LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAi 557 (606)
T KOG0547|consen 482 VKQYDKAIE---LEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAI 557 (606)
T ss_pred HHHHHHHHh---hccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHH
Confidence 999998863 3443 222223332223 38999999999987 5666 4458999999999999999999
Q ss_pred HHHHHHHhc
Q 037414 395 MAAKSLLER 403 (577)
Q Consensus 395 ~~~~~~~~~ 403 (577)
++|++...+
T Consensus 558 elFEksa~l 566 (606)
T KOG0547|consen 558 ELFEKSAQL 566 (606)
T ss_pred HHHHHHHHH
Confidence 999998765
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.86 E-value=8.7e-06 Score=83.81 Aligned_cols=338 Identities=15% Similarity=0.106 Sum_probs=206.7
Q ss_pred HHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHhcCCCC---CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcch
Q 037414 84 VAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKER---DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYT 160 (577)
Q Consensus 84 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 160 (577)
....+.-|..+|-.|.-+..++|+++.+-+.|++...- ....|+.+-..|...|.-..|+.+.+.-....-.|+..+
T Consensus 315 r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s 394 (799)
T KOG4162|consen 315 RLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDIS 394 (799)
T ss_pred HHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcch
Confidence 33445678999999999999999999999999987542 455799999999999999999999988765433354444
Q ss_pred HHHH-HHHHh-cCCChHHHHHHHHHHHHc--CC--CCcHHHHHHHHHHHHhCC-----------CHHHHHHHHhhCCCCC
Q 037414 161 LPFV-IRACR-DRKDIVMGRLIHDIVLKS--GL--DIDQFVCAALVDMYAKCK-----------VIDDARQLFDQMPTRD 223 (577)
Q Consensus 161 ~~~l-l~~~~-~~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~li~~~~~~g-----------~~~~A~~~~~~m~~~~ 223 (577)
--.+ -..|. +.+..+++..+-.++++. +. ......|-.+.-+|...- ...++.+.+++..+.|
T Consensus 395 ~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d 474 (799)
T KOG4162|consen 395 VLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD 474 (799)
T ss_pred HHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC
Confidence 3333 33343 457777777777666662 11 122344444444444321 2345666677665443
Q ss_pred hhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC----CChhhHHHHHHHHHHcCChHHHHHHHHHhhh
Q 037414 224 LVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ----KNVISWSAMIAAYGYHGQGKKALDLFPMMLS 299 (577)
Q Consensus 224 ~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 299 (577)
... |++.. -|.--|+-.++++.|.+...+..+ .+...|..+.-.+...+++.+|+.+.+...+
T Consensus 475 ~~d-----------p~~if--~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~ 541 (799)
T KOG4162|consen 475 PTD-----------PLVIF--YLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALE 541 (799)
T ss_pred CCC-----------chHHH--HHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 321 11111 122224444455555444443322 2334444444444444444444444333222
Q ss_pred C-CC----------------------------------------------------------------------------
Q 037414 300 S-RV---------------------------------------------------------------------------- 302 (577)
Q Consensus 300 ~-g~---------------------------------------------------------------------------- 302 (577)
. |.
T Consensus 542 E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a 621 (799)
T KOG4162|consen 542 EFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVA 621 (799)
T ss_pred HhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHH
Confidence 1 00
Q ss_pred -------------------CCCH------HHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-CHHHHHHHHHHHHHcC
Q 037414 303 -------------------LPNR------ITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP-DVKHYTCMVDLLGRAG 356 (577)
Q Consensus 303 -------------------~p~~------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g 356 (577)
.|+. ..+......+...+..++|...+.+.. ++.| ....|......+...|
T Consensus 622 ~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~---~~~~l~~~~~~~~G~~~~~~~ 698 (799)
T KOG4162|consen 622 SQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS---KIDPLSASVYYLRGLLLEVKG 698 (799)
T ss_pred hhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH---hcchhhHHHHHHhhHHHHHHH
Confidence 0010 001122223333444445544444442 2222 2344555555666778
Q ss_pred CHHHHHHHHHhC-CCCCCHh-HHHHHHHHHHhcCCHHHHHH--HHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHH
Q 037414 357 RLDEALKLIESM-SVEKDEG-LWGALLGACRIHKNVDLAEM--AAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRD 432 (577)
Q Consensus 357 ~~~~A~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 432 (577)
++++|.+.|... .+.|+.+ +..++...+.+.|+...|.. ++..+++.+|.++..|..|...+.+.|+.++|.+.|.
T Consensus 699 ~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~ 778 (799)
T KOG4162|consen 699 QLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQ 778 (799)
T ss_pred hhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHH
Confidence 888888877766 6677554 88888889999998888887 9999999999999999999999999999999999998
Q ss_pred HHhhC
Q 037414 433 LMTRR 437 (577)
Q Consensus 433 ~m~~~ 437 (577)
...+-
T Consensus 779 aa~qL 783 (799)
T KOG4162|consen 779 AALQL 783 (799)
T ss_pred HHHhh
Confidence 77654
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.84 E-value=4e-07 Score=80.40 Aligned_cols=162 Identities=16% Similarity=0.100 Sum_probs=126.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC-HHHHHHHHHHH
Q 037414 274 WSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD-VKHYTCMVDLL 352 (577)
Q Consensus 274 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~ 352 (577)
...+.-+|.+.|+...|..-+++.++.. +-+..++..+...|.+.|..+.|.+.|+..+ .+.|+ ..+.|-...-+
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~FL 113 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhHHH
Confidence 4456677888888888888888888752 2234577777888888888888888888876 34554 45666666777
Q ss_pred HHcCCHHHHHHHHHhCCCCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHH
Q 037414 353 GRAGRLDEALKLIESMSVEKD----EGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVA 428 (577)
Q Consensus 353 ~~~g~~~~A~~~~~~m~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 428 (577)
|..|++++|...|++.-..|+ ..+|..+.-+..+.|+.+.|...+++.++.+|+.+.+...+.....+.|++..|.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence 888888888888888732332 3478888888888899999999999999999999888889999999999999999
Q ss_pred HHHHHHhhCCC
Q 037414 429 KIRDLMTRRRL 439 (577)
Q Consensus 429 ~~~~~m~~~g~ 439 (577)
..++.....+.
T Consensus 194 ~~~~~~~~~~~ 204 (250)
T COG3063 194 LYLERYQQRGG 204 (250)
T ss_pred HHHHHHHhccc
Confidence 98888876654
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.83 E-value=9.5e-06 Score=81.73 Aligned_cols=269 Identities=13% Similarity=0.142 Sum_probs=159.0
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHcCCCCc---HHHHHHHHHHHHhCCCHHHHHHHHhhCCC---CCh-hHHHHHHhc
Q 037414 161 LPFVIRACRDRKDIVMGRLIHDIVLKSGLDID---QFVCAALVDMYAKCKVIDDARQLFDQMPT---RDL-VTWTVMIGA 233 (577)
Q Consensus 161 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~-~~~~~~i~~ 233 (577)
|..+.+.|-..|+++.|+.+|++..+-.++.- ..+|.....+-.+..+++.|+++.+.... +.. .-|.
T Consensus 390 w~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd----- 464 (835)
T KOG2047|consen 390 WVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYD----- 464 (835)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhc-----
Confidence 44455555666666666666666655443221 34455555555555566666666555421 100 0000
Q ss_pred CCCCc------chhhHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHH---HHHHHHHcCChHHHHHHHHHhhhCCCCC
Q 037414 234 NKFLL------DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSA---MIAAYGYHGQGKKALDLFPMMLSSRVLP 304 (577)
Q Consensus 234 ~g~~~------~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---li~~~~~~g~~~~A~~l~~~m~~~g~~p 304 (577)
.+.++ +..+|...++.--..|-++....+|+++.+--+.|=-. -..-+-.+.-++++.+.+++-+..=-.|
T Consensus 465 ~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p 544 (835)
T KOG2047|consen 465 NSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWP 544 (835)
T ss_pred CCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCc
Confidence 12222 33455556666667888888888998887622222111 1122334566889999988766653445
Q ss_pred CHH-HHHHHHHHH---hccCCHHHHHHHHHHhhHhcCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHhC--CCCCC--H
Q 037414 305 NRI-TFVSLLYAC---SHTGLVEEGLRLFSSMWDDFAVRPDVKH--YTCMVDLLGRAGRLDEALKLIESM--SVEKD--E 374 (577)
Q Consensus 305 ~~~-t~~~ll~a~---~~~g~~~~a~~~~~~m~~~~~~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~m--~~~p~--~ 374 (577)
+.. .++..+.-+ .....++.|..+|++.++ |.+|...- |-...+.=-+.|-...|..++++. ++++. .
T Consensus 545 ~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l 622 (835)
T KOG2047|consen 545 NVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRL 622 (835)
T ss_pred cHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHH
Confidence 553 344433322 233468999999999986 66665322 222222223468888899999998 34443 2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc--hhHHHHHHHHhccCChhHHHHHHHHHhh
Q 037414 375 GLWGALLGACRIHKNVDLAEMAAKSLLERQPQNP--GHYVLLSNVYANAGRWQDVAKIRDLMTR 436 (577)
Q Consensus 375 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 436 (577)
..|+..|.-....=.+..-..+++++++.-|++. ....-.+..-.+.|..+.|..++..-.+
T Consensus 623 ~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq 686 (835)
T KOG2047|consen 623 DMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQ 686 (835)
T ss_pred HHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh
Confidence 3888888665554446667789999998877643 2333455666788999999999876543
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.4e-05 Score=78.79 Aligned_cols=300 Identities=9% Similarity=-0.063 Sum_probs=156.0
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHCCC-CCCcchHH-HHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHH---H
Q 037414 125 SWSVMVGGFSKVADFINCFETFREFIRCGM-QLDSYTLP-FVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAA---L 199 (577)
Q Consensus 125 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~-~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~---l 199 (577)
.|..+...+...|+++.+.+.+....+... .++..... .....+...|++++|..++++..+.. |.|...+.. +
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~ 86 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGA 86 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHH
Confidence 344455555555666665555554443211 11111111 11122445667777777777666653 334333331 1
Q ss_pred HHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHH
Q 037414 200 VDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ---KNVISWSA 276 (577)
Q Consensus 200 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ 276 (577)
.......|..+.+.+.++..... .+........+...+...|++++|...+++..+ .+...+..
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~ 153 (355)
T cd05804 87 FGLGDFSGMRDHVARVLPLWAPE-------------NPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHA 153 (355)
T ss_pred HHhcccccCchhHHHHHhccCcC-------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 11222234445555554432111 111233444556667777777777777777654 33455666
Q ss_pred HHHHHHHcCChHHHHHHHHHhhhCCC-CCCH--HHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHH-H--HHHH
Q 037414 277 MIAAYGYHGQGKKALDLFPMMLSSRV-LPNR--ITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHY-T--CMVD 350 (577)
Q Consensus 277 li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~-~--~li~ 350 (577)
+...|...|++++|..++++...... .|+. ..+..+...+...|+.++|..+++.........+..... + .++.
T Consensus 154 la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 233 (355)
T cd05804 154 VAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLW 233 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHH
Confidence 77777777788888877777665421 1222 233456666777788888888777764221111111111 1 2223
Q ss_pred HHHHcCCHHHHHHH---HHhC-CCCC---CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-C--------CCchhHHHH
Q 037414 351 LLGRAGRLDEALKL---IESM-SVEK---DEGLWGALLGACRIHKNVDLAEMAAKSLLERQ-P--------QNPGHYVLL 414 (577)
Q Consensus 351 ~~~~~g~~~~A~~~---~~~m-~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p--------~~~~~~~~l 414 (577)
-+...|..+.+.++ .... +..| ..........++...|+.+.|..+++.+.... . .........
T Consensus 234 ~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~ 313 (355)
T cd05804 234 RLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAE 313 (355)
T ss_pred HHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHH
Confidence 33333432222222 1111 1001 11222245566778888999988888876532 1 123344566
Q ss_pred HHHHhccCChhHHHHHHHHHhhCC
Q 037414 415 SNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 415 ~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
..++...|++++|.+.+.......
T Consensus 314 A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 314 ALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHH
Confidence 667889999999999998776543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.1e-06 Score=88.43 Aligned_cols=148 Identities=14% Similarity=0.084 Sum_probs=110.3
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhc-------------CCCCCHH--HHHHHHHHHH
Q 037414 289 KALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDF-------------AVRPDVK--HYTCMVDLLG 353 (577)
Q Consensus 289 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-------------~~~p~~~--~~~~li~~~~ 353 (577)
.+..++..+...|+++ +|+.|-..|......+-..+++....... .-.|+.. ++..+...|-
T Consensus 129 ~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd 205 (517)
T PF12569_consen 129 RLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYD 205 (517)
T ss_pred HHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHH
Confidence 4556667777788664 56666666665555555555555543321 1124443 4456678888
Q ss_pred HcCCHHHHHHHHHhC-CCCCCH-hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHH
Q 037414 354 RAGRLDEALKLIESM-SVEKDE-GLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIR 431 (577)
Q Consensus 354 ~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 431 (577)
..|++++|++++++. ...|+. ..|..-...+...|++++|.+.++.+.++++.|...-.-.+..+.++|+.++|.+++
T Consensus 206 ~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~ 285 (517)
T PF12569_consen 206 YLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTA 285 (517)
T ss_pred HhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999976 556764 477778888999999999999999999999998777777788889999999999999
Q ss_pred HHHhhCCC
Q 037414 432 DLMTRRRL 439 (577)
Q Consensus 432 ~~m~~~g~ 439 (577)
....+.+.
T Consensus 286 ~~Ftr~~~ 293 (517)
T PF12569_consen 286 SLFTREDV 293 (517)
T ss_pred HhhcCCCC
Confidence 98877765
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.78 E-value=7.3e-05 Score=75.60 Aligned_cols=337 Identities=15% Similarity=0.141 Sum_probs=200.6
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHhcCCCC----------CcchHHHHHHHHHhCCChh---HHHHHHHHHHHCCCCCCc
Q 037414 92 LIVANKLLYIYALHKALTDAHALFNGMKER----------DSVSWSVMVGGFSKVADFI---NCFETFREFIRCGMQLDS 158 (577)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~----------~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~ 158 (577)
+..-+--|..+++.+++++|.+.+..+... +-..|+.+-...+++-+.- ....+++.+.. .-+|.
T Consensus 169 P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~--rftDq 246 (835)
T KOG2047|consen 169 PEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIR--RFTDQ 246 (835)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcc--cCcHH
Confidence 344556677777888888888877776542 3335666666666554432 23334444433 23453
Q ss_pred --chHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCC----------------------HHHHHH
Q 037414 159 --YTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKV----------------------IDDARQ 214 (577)
Q Consensus 159 --~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~----------------------~~~A~~ 214 (577)
..|++|.+-|.+.|.++.|..++++.+..- .++.-++.+-+.|+.... ++-...
T Consensus 247 ~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a 324 (835)
T KOG2047|consen 247 LGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMA 324 (835)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHH
Confidence 457888888888888888888888877652 333344444444443211 122222
Q ss_pred HHhhCCCCChhHHHHHHhc-------------------------------CCCCc------chhhHHHHHHHHHhcCCHH
Q 037414 215 LFDQMPTRDLVTWTVMIGA-------------------------------NKFLL------DVILGTAVIDMYAKCGSID 257 (577)
Q Consensus 215 ~~~~m~~~~~~~~~~~i~~-------------------------------~g~~~------~~~~~~~Li~~~~~~g~~~ 257 (577)
-|+.+.++-+..-|+.+-. ..+.| -...|..+.+.|-..|+++
T Consensus 325 ~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~ 404 (835)
T KOG2047|consen 325 RFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLD 404 (835)
T ss_pred HHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHH
Confidence 2333322111111111111 11111 2457788999999999999
Q ss_pred HHHHHHHhccCCC-------hhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCC-----------CCH------HHHHHHH
Q 037414 258 SAREIFDRMRQKN-------VISWSAMIAAYGYHGQGKKALDLFPMMLSSRVL-----------PNR------ITFVSLL 313 (577)
Q Consensus 258 ~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-----------p~~------~t~~~ll 313 (577)
.|..+|++..+-+ ...|..-...-.++.+++.|+++.+......-. +.. ..+...+
T Consensus 405 ~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~ 484 (835)
T KOG2047|consen 405 DARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYA 484 (835)
T ss_pred HHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHH
Confidence 9999999987632 235666667777888999999998887643111 111 1233334
Q ss_pred HHHhccCCHHHHHHHHHHhhHhcCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHhC-C-C-CCCHh-HHHHHHHHHHh--
Q 037414 314 YACSHTGLVEEGLRLFSSMWDDFAVRPDVK-HYTCMVDLLGRAGRLDEALKLIESM-S-V-EKDEG-LWGALLGACRI-- 386 (577)
Q Consensus 314 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m-~-~-~p~~~-~~~~ll~~~~~-- 386 (577)
+.--..|-++....+++.++.-.-..|... .|.. .+-...-++++.+++++- + + -|++. .|+..+.-+.+
T Consensus 485 DleEs~gtfestk~vYdriidLriaTPqii~NyAm---fLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ry 561 (835)
T KOG2047|consen 485 DLEESLGTFESTKAVYDRIIDLRIATPQIIINYAM---FLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRY 561 (835)
T ss_pred HHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHH---HHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHh
Confidence 444445677777788888764322233321 2222 234556689999999986 2 2 34554 88888876543
Q ss_pred -cCCHHHHHHHHHHHHhcCCCCc--hhHHHHHHHHhccCChhHHHHHHHHHh
Q 037414 387 -HKNVDLAEMAAKSLLERQPQNP--GHYVLLSNVYANAGRWQDVAKIRDLMT 435 (577)
Q Consensus 387 -~g~~~~a~~~~~~~~~~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~ 435 (577)
....+.|..+|+++++.-|+.. ..|...+..-.+-|.-..|+.++++..
T Consensus 562 gg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 562 GGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3468999999999999777532 233333333445577777888887753
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.3e-07 Score=87.13 Aligned_cols=79 Identities=15% Similarity=0.192 Sum_probs=41.4
Q ss_pred CHHHHHHHHHhC--CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCCh-hHHHHHHHH
Q 037414 357 RLDEALKLIESM--SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRW-QDVAKIRDL 433 (577)
Q Consensus 357 ~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~ 433 (577)
.+.+|..+|+++ ...+++.+.+.+..+....|++++|+.+++++++.+|.++.+...++.+....|+. +.+.+.+.+
T Consensus 182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 455555555555 22244445555555555666666666666666555566655555555555555555 444455555
Q ss_pred Hh
Q 037414 434 MT 435 (577)
Q Consensus 434 m~ 435 (577)
++
T Consensus 262 L~ 263 (290)
T PF04733_consen 262 LK 263 (290)
T ss_dssp CH
T ss_pred HH
Confidence 44
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.8e-07 Score=87.51 Aligned_cols=253 Identities=11% Similarity=0.051 Sum_probs=145.3
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHH
Q 037414 133 FSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDA 212 (577)
Q Consensus 133 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 212 (577)
+.-.|++..++.-.+ .....-..+......+.+++...|..+.+ +.++.+.. .|.......+...+...++-+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~v---l~ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSV---LSEIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHH---HHHS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHH---HHHhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 334566666665444 11111111223344556666666665532 23332222 45544444444333333444555
Q ss_pred HHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHH
Q 037414 213 RQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALD 292 (577)
Q Consensus 213 ~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 292 (577)
..-+++....... ..+..+......+|...|++++|+++++.. .+.......+..|.+.++++.|.+
T Consensus 86 l~~l~~~~~~~~~-----------~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k 152 (290)
T PF04733_consen 86 LEELKELLADQAG-----------ESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEK 152 (290)
T ss_dssp HHHHHHCCCTS--------------CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHhccc-----------cccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHH
Confidence 5545443322111 112233333445566778888888777765 455556667788888888888888
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 037414 293 LFPMMLSSRVLPNRITFVSLLYACSH----TGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM 368 (577)
Q Consensus 293 l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 368 (577)
.++.|.+. ..| .+...+..++.. ...+.+|..+|+++.+ ...+++.+.+.+.-+....|++++|.+++++.
T Consensus 153 ~l~~~~~~--~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~a 227 (290)
T PF04733_consen 153 ELKNMQQI--DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEA 227 (290)
T ss_dssp HHHHHHCC--SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHhc--CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 88888764 333 334445554433 2357888888888854 34577788888888888888999998888775
Q ss_pred -CCCC-CHhHHHHHHHHHHhcCCH-HHHHHHHHHHHhcCCCCc
Q 037414 369 -SVEK-DEGLWGALLGACRIHKNV-DLAEMAAKSLLERQPQNP 408 (577)
Q Consensus 369 -~~~p-~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~~p~~~ 408 (577)
...| |..+...++......|+. +.+.+.+.++....|..+
T Consensus 228 l~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 228 LEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp CCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred HHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 3344 445677777777777777 777888888888888865
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.77 E-value=5.4e-06 Score=85.52 Aligned_cols=124 Identities=17% Similarity=0.149 Sum_probs=72.2
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHh
Q 037414 310 VSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD-VKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRI 386 (577)
Q Consensus 310 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~ 386 (577)
.-+...|...|+.++|.++.+..++ ..|+ ++.|..-...|-+.|++++|.+.++.. .+.+ |-..-+.....+.+
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~---htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR 274 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIE---HTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLR 274 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH
Confidence 3344556666777777777766653 2444 556666666666777777776666665 2222 33444445555666
Q ss_pred cCCHHHHHHHHHHHHhcC--CCC-------chhHHHHHHHHhccCChhHHHHHHHHHhh
Q 037414 387 HKNVDLAEMAAKSLLERQ--PQN-------PGHYVLLSNVYANAGRWQDVAKIRDLMTR 436 (577)
Q Consensus 387 ~g~~~~a~~~~~~~~~~~--p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 436 (577)
.|++++|..++....+.+ |.. .......+.+|.+.|++..|++-+..+.+
T Consensus 275 a~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 275 AGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred CCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 677777776666654443 111 01223456677777877777776665543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.3e-07 Score=92.22 Aligned_cols=220 Identities=16% Similarity=0.097 Sum_probs=170.4
Q ss_pred HHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHH
Q 037414 202 MYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ---KNVISWSAMI 278 (577)
Q Consensus 202 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li 278 (577)
-+.+.|++.+|.-.|+.....|+. +...|.-|...-...++-..|...+.+..+ .|....-+|.
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~-------------haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLA 360 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQ-------------HAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALA 360 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChH-------------HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 356778888888888887766543 566777778888888888888888888765 3456667777
Q ss_pred HHHHHcCChHHHHHHHHHhhhCCCC--------CCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHH
Q 037414 279 AAYGYHGQGKKALDLFPMMLSSRVL--------PNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVD 350 (577)
Q Consensus 279 ~~~~~~g~~~~A~~l~~~m~~~g~~--------p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 350 (577)
-.|...|.-.+|+..++..+....+ ++..+-.. ..+.....+....++|-.+....+..+|..++.+|.-
T Consensus 361 VSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGV 438 (579)
T KOG1125|consen 361 VSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGV 438 (579)
T ss_pred HHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHH
Confidence 7888888888999999888654211 00000000 1222333455666777777666676678888889999
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHH
Q 037414 351 LLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVA 428 (577)
Q Consensus 351 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 428 (577)
.|--.|.+++|.+.|+.. .++| |..+||.|...++...+.++|+..|.+++++.|.-..+...|.-.|...|.+++|.
T Consensus 439 Ly~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~ 518 (579)
T KOG1125|consen 439 LYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAV 518 (579)
T ss_pred HHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHH
Confidence 999999999999999988 6778 55699999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhh
Q 037414 429 KIRDLMTR 436 (577)
Q Consensus 429 ~~~~~m~~ 436 (577)
+.|-....
T Consensus 519 ~hlL~AL~ 526 (579)
T KOG1125|consen 519 KHLLEALS 526 (579)
T ss_pred HHHHHHHH
Confidence 99876543
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.7e-05 Score=77.02 Aligned_cols=392 Identities=13% Similarity=0.127 Sum_probs=231.5
Q ss_pred hHHHhhccCCCCCCCCCcccCccCCCCCCCCCCCC-hhhHHHHHHhccChHHHHHHHHHHHHcCCCCCHHHHHH--HHHH
Q 037414 25 TAAIALEPHGHEQNPMNPRVPMQMGPDCQFTRSVD-PKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANK--LLYI 101 (577)
Q Consensus 25 ~~~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~-~~~~~~ll~a~~~~~~a~~~~~~~~~~g~~~~~~~~~~--li~~ 101 (577)
+-++-+...|.+++|+..-...... .|| ...+..=+.+....+.-...+..+...+. ..+++. +=.+
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~-------~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~---~~~~~~~~fEKA 86 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSI-------VPDDEDAIRCKVVALIQLDKYEDALKLIKKNGA---LLVINSFFFEKA 86 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhc-------CCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch---hhhcchhhHHHH
Confidence 3445567788888888888777644 233 33343333333343333333333333331 111222 2344
Q ss_pred HH--cCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCC------------------------
Q 037414 102 YA--LHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQ------------------------ 155 (577)
Q Consensus 102 ~~--~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~------------------------ 155 (577)
|+ +.+..|+|+..++....-+...-..-...+-+.|++++|+++|+.+.+.+..
T Consensus 87 Yc~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~ 166 (652)
T KOG2376|consen 87 YCEYRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQS 166 (652)
T ss_pred HHHHHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHh
Confidence 54 6789999999998665555556666677888999999999999998554321
Q ss_pred -C--CcchHHHHHHH---HhcCCChHHHHHHHHHHHHcCC-------CC--cH-----HHHHHHHHHHHhCCCHHHHHHH
Q 037414 156 -L--DSYTLPFVIRA---CRDRKDIVMGRLIHDIVLKSGL-------DI--DQ-----FVCAALVDMYAKCKVIDDARQL 215 (577)
Q Consensus 156 -p--~~~t~~~ll~~---~~~~~~~~~a~~~~~~~~~~g~-------~~--~~-----~~~~~li~~~~~~g~~~~A~~~ 215 (577)
| ...+|..+.+. +...|++..|++++....+.+. .. +. .+---|.-++-..|+.++|..+
T Consensus 167 v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~i 246 (652)
T KOG2376|consen 167 VPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSI 246 (652)
T ss_pred ccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 1 12355555443 4578999999999988843211 00 11 1222344566778999999998
Q ss_pred HhhCCCCCh-------hHHHHHHhcCCCCc--c-----------------------------hhhHHHHHHHHHhcCCHH
Q 037414 216 FDQMPTRDL-------VTWTVMIGANKFLL--D-----------------------------VILGTAVIDMYAKCGSID 257 (577)
Q Consensus 216 ~~~m~~~~~-------~~~~~~i~~~g~~~--~-----------------------------~~~~~~Li~~~~~~g~~~ 257 (577)
+..+...+. +.-|-+++..+..+ | ..--+.|+.+| .+..+
T Consensus 247 y~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk~~ 324 (652)
T KOG2376|consen 247 YVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--TNKMD 324 (652)
T ss_pred HHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHH
Confidence 887764322 11222222211110 0 00111222222 23334
Q ss_pred HHHHHHHhccCCC-hhhHHHHHHHHH--HcCChHHHHHHHHHhhhCCCCCCH--HHHHHHHHHHhccCCHHHHHHHHH--
Q 037414 258 SAREIFDRMRQKN-VISWSAMIAAYG--YHGQGKKALDLFPMMLSSRVLPNR--ITFVSLLYACSHTGLVEEGLRLFS-- 330 (577)
Q Consensus 258 ~A~~~~~~~~~~~-~~~~~~li~~~~--~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~-- 330 (577)
.+.++-...+... ...+.+++.... +...+.+|.+++...-+. .|+. ......+......|+++.|.+++.
T Consensus 325 q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~ 402 (652)
T KOG2376|consen 325 QVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILSLF 402 (652)
T ss_pred HHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4444444443311 233444443332 223466777777776554 3333 344455666788999999999998
Q ss_pred ------HhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC--------CCCCC-HhHHHHHHHHHHhcCCHHHHHH
Q 037414 331 ------SMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM--------SVEKD-EGLWGALLGACRIHKNVDLAEM 395 (577)
Q Consensus 331 ------~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~-~~~~~~ll~~~~~~g~~~~a~~ 395 (577)
.+. +.+.. +.+..+++..|.+.++-+.|..++.+. .-.+. ..+|.-+...-.++|+.++|..
T Consensus 403 ~~~~~ss~~-~~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s 479 (652)
T KOG2376|consen 403 LESWKSSIL-EAKHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASS 479 (652)
T ss_pred hhhhhhhhh-hhccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHH
Confidence 443 22333 445567888888888766666666554 11222 2244445555567899999999
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHH
Q 037414 396 AAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLM 434 (577)
Q Consensus 396 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 434 (577)
+++++.+.+|++..+...++.+|++. +.+.|..+-+.+
T Consensus 480 ~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 480 LLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 99999999999999999999999876 567777665444
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.9e-06 Score=75.05 Aligned_cols=194 Identities=13% Similarity=0.073 Sum_probs=162.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhccCC---ChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhc
Q 037414 242 LGTAVIDMYAKCGSIDSAREIFDRMRQK---NVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSH 318 (577)
Q Consensus 242 ~~~~Li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 318 (577)
+...|.-.|...|+...|..-+++..+. +..+|..+...|.+.|+.+.|.+.|++..... +-+....|..-.-+|.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 4556788899999999999999998863 34589999999999999999999999998752 2245567777777889
Q ss_pred cCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCCHHHHHHH
Q 037414 319 TGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEKD-EGLWGALLGACRIHKNVDLAEMA 396 (577)
Q Consensus 319 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~ 396 (577)
.|.+++|.+.|+..+.......-..+|.-+.-.-.+.|+.+.|.+.|++. ...|+ ..+...+.......|++-.|...
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHH
Confidence 99999999999999876444444678888888888999999999999887 44553 44777888888999999999999
Q ss_pred HHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhh
Q 037414 397 AKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTR 436 (577)
Q Consensus 397 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 436 (577)
++......+.+.......+.+-...|+-+.+.+.=..+.+
T Consensus 196 ~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 196 LERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 9999998888888888999999999999988888776654
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.70 E-value=4.9e-05 Score=77.00 Aligned_cols=301 Identities=11% Similarity=0.020 Sum_probs=160.8
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHHHHCC-CCCCcchHHHHHH------HHhcCCChHHHHHHHHHHHHcCCCCcHH
Q 037414 122 DSVSWSVMVGGFSKVADFINCFETFREFIRCG-MQLDSYTLPFVIR------ACRDRKDIVMGRLIHDIVLKSGLDIDQF 194 (577)
Q Consensus 122 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~------~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 194 (577)
....|..+..++.-.|++..|..+.++..+.. -.|+...|..... ...+.|.++.|.+.+..-... +.....
T Consensus 142 ~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla 220 (700)
T KOG1156|consen 142 QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLA 220 (700)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHH
Confidence 34456666666666666666666666665543 1344443322211 234455555555555433222 122223
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHH-HHHHhccCCC-hh
Q 037414 195 VCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAR-EIFDRMRQKN-VI 272 (577)
Q Consensus 195 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~-~~~~~~~~~~-~~ 272 (577)
.-..-.+.+.+.+++++|..++..+..+++. +...|-.+..++.+--+.-++. .+|....+.- ..
T Consensus 221 ~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPd-------------n~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~ 287 (700)
T KOG1156|consen 221 FEETKADLLMKLGQLEEAVKVYRRLLERNPD-------------NLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRH 287 (700)
T ss_pred HhhhHHHHHHHHhhHHhHHHHHHHHHhhCch-------------hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCccc
Confidence 3334455666667777777766666554322 2333334444444333333333 4444443200 00
Q ss_pred h-HHHHHHHHHH-cCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhh---HhcC----------
Q 037414 273 S-WSAMIAAYGY-HGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMW---DDFA---------- 337 (577)
Q Consensus 273 ~-~~~li~~~~~-~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~---~~~~---------- 337 (577)
. -.-+--...+ ..-.+..-.++..+.+.|+++- |..+.+-|-.....+--+++.-.+. ...|
T Consensus 288 e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~ 364 (700)
T KOG1156|consen 288 ECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQ 364 (700)
T ss_pred ccchhccHHHhCcchhHHHHHHHHHHHhhcCCCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCccccccc
Confidence 0 0000000111 1122334455666677776643 3334433333222221122221111 1111
Q ss_pred CCCCHHH--HHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHh-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHH
Q 037414 338 VRPDVKH--YTCMVDLLGRAGRLDEALKLIESM-SVEKDEG-LWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVL 413 (577)
Q Consensus 338 ~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 413 (577)
-+|+... +-.++..|-+.|+++.|+..++.. +..|+.+ .|..-.+.+...|++++|...++++.+++-.|...-.-
T Consensus 365 E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsK 444 (700)
T KOG1156|consen 365 EPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSK 444 (700)
T ss_pred CCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHH
Confidence 1455444 446778889999999999999987 5556654 55555577889999999999999999998666433224
Q ss_pred HHHHHhccCChhHHHHHHHHHhhCCC
Q 037414 414 LSNVYANAGRWQDVAKIRDLMTRRRL 439 (577)
Q Consensus 414 l~~~~~~~g~~~~A~~~~~~m~~~g~ 439 (577)
-+.-..++.+.++|.++.....+.|.
T Consensus 445 cAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 445 CAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHccccHHHHHHHHHhhhccc
Confidence 45566788999999999988887764
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.9e-05 Score=78.15 Aligned_cols=295 Identities=12% Similarity=0.029 Sum_probs=169.0
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHhcCCC---CCcch---HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCc-chHHH-
Q 037414 92 LIVANKLLYIYALHKALTDAHALFNGMKE---RDSVS---WSVMVGGFSKVADFINCFETFREFIRCGMQLDS-YTLPF- 163 (577)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~- 163 (577)
...+..+...|...|+.+++.+.+....+ .+... .......+...|++++|.+.+++..+. .|+. ..+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDLLALKLH 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHh
Confidence 33455555566666767665555544322 12222 222233566788999999999888875 3433 33331
Q ss_pred --HHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchh
Q 037414 164 --VIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVI 241 (577)
Q Consensus 164 --ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~ 241 (577)
........+..+.+.+.+... ....+........+...+...|++++|.+.+++..+.+ +.+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-------------p~~~~ 149 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLW-APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-------------PDDAW 149 (355)
T ss_pred HHHHHhcccccCchhHHHHHhcc-CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------------CCCcH
Confidence 111112234455555555441 11122334455566678888999999999998876543 22456
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhccC--C---Ch--hhHHHHHHHHHHcCChHHHHHHHHHhhhCCC-CCCHHHH-H--
Q 037414 242 LGTAVIDMYAKCGSIDSAREIFDRMRQ--K---NV--ISWSAMIAAYGYHGQGKKALDLFPMMLSSRV-LPNRITF-V-- 310 (577)
Q Consensus 242 ~~~~Li~~~~~~g~~~~A~~~~~~~~~--~---~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~-~-- 310 (577)
.+..+...|...|++++|...+++..+ + +. ..|..+...+...|++++|..++++...... .+..... +
T Consensus 150 ~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 229 (355)
T cd05804 150 AVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAA 229 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHH
Confidence 777888889999999999999988764 1 21 2355678888999999999999999864322 1222211 1
Q ss_pred HHHHHHhccCCHHHHHHH--HHHhhHhcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHhCC--CCC---CH----hHH
Q 037414 311 SLLYACSHTGLVEEGLRL--FSSMWDDFAVRPD--VKHYTCMVDLLGRAGRLDEALKLIESMS--VEK---DE----GLW 377 (577)
Q Consensus 311 ~ll~a~~~~g~~~~a~~~--~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p---~~----~~~ 377 (577)
.++.-+...|..+.+.+. +...... ..... .........++...|+.++|..+++.+. ... .. .+-
T Consensus 230 ~~l~~~~~~g~~~~~~~w~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~ 308 (355)
T cd05804 230 SLLWRLELAGHVDVGDRWEDLADYAAW-HFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVG 308 (355)
T ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhh
Confidence 223333333433333222 1111111 11111 1222245567778899999999998871 111 11 122
Q ss_pred HHHHHH--HHhcCCHHHHHHHHHHHHhc
Q 037414 378 GALLGA--CRIHKNVDLAEMAAKSLLER 403 (577)
Q Consensus 378 ~~ll~~--~~~~g~~~~a~~~~~~~~~~ 403 (577)
..++.+ +...|+.+.|.+.+..++..
T Consensus 309 ~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 309 LPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 223333 56889999999998887754
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.2e-05 Score=73.68 Aligned_cols=301 Identities=14% Similarity=0.130 Sum_probs=178.0
Q ss_pred HHHHHHHHHcCCChHHHHHHHhcCCCC---CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHH-HHHHHhc
Q 037414 95 ANKLLYIYALHKALTDAHALFNGMKER---DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPF-VIRACRD 170 (577)
Q Consensus 95 ~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~~~~~ 170 (577)
+++.+..+.+..++++|++++..-.++ +......|..+|-...++..|-+.++++-.. .|...-|.. -...+-+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYK 90 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHH
Confidence 455555566777777887777665554 3344566666777777777887777777653 444443322 2233445
Q ss_pred CCChHHHHHHHHHHHHcCCCCcHHHHHHHHH--HHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHH
Q 037414 171 RKDIVMGRLIHDIVLKSGLDIDQFVCAALVD--MYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVID 248 (577)
Q Consensus 171 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~ 248 (577)
.+.+..|.++...|... ++...-..-+. .....+++..+..+.++.+..+ +..+.+...-
T Consensus 91 A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---------------~Ad~~in~gC 152 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---------------EADGQINLGC 152 (459)
T ss_pred hcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---------------ccchhccchh
Confidence 56677777776665432 22111111111 2234566666777777766322 2223334444
Q ss_pred HHHhcCCHHHHHHHHHhccC----CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHH
Q 037414 249 MYAKCGSIDSAREIFDRMRQ----KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEE 324 (577)
Q Consensus 249 ~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 324 (577)
...+.|+++.|.+-|+...+ .....||..+..| +.|+++.|+++..+.++.|++-.+. ++ .|...+
T Consensus 153 llykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPE-lg--------IGm~te 222 (459)
T KOG4340|consen 153 LLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPE-LG--------IGMTTE 222 (459)
T ss_pred eeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCc-cC--------ccceec
Confidence 55677777777777777654 3445566544433 4567777777777777776553221 00 011111
Q ss_pred HH---------HHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhCC----CCCCHhHHHHHHHHHHhcCCHH
Q 037414 325 GL---------RLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMS----VEKDEGLWGALLGACRIHKNVD 391 (577)
Q Consensus 325 a~---------~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~p~~~~~~~ll~~~~~~g~~~ 391 (577)
+. .+....+ ++.+|.-...+.+.|+++.|.+-+..|| .+.|++|...+.-. -..+++.
T Consensus 223 giDvrsvgNt~~lh~Sal--------~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~ 293 (459)
T KOG4340|consen 223 GIDVRSVGNTLVLHQSAL--------VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPT 293 (459)
T ss_pred cCchhcccchHHHHHHHH--------HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCcc
Confidence 11 1111110 1223333334568899999999999994 23466666554322 2345667
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHH
Q 037414 392 LAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLM 434 (577)
Q Consensus 392 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 434 (577)
.+.+-+.-+++.+|-.+.++..++-.|++..-++-|..++-+-
T Consensus 294 ~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 294 EGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred ccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhhC
Confidence 7777777888889988899999999999999999999887543
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.67 E-value=7.6e-05 Score=69.85 Aligned_cols=200 Identities=12% Similarity=0.049 Sum_probs=138.4
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHhcCCCCCcchHHHHH---HHHHhCCChhHHHHHHHHHHHCCCCCCcchHHH-HHH
Q 037414 91 NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMV---GGFSKVADFINCFETFREFIRCGMQLDSYTLPF-VIR 166 (577)
Q Consensus 91 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~ 166 (577)
++.-.--|-..+...|++.+|+.-|....+-|+..|.++. ..|...|+...|+.=|...++ ++||-..-.. --.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhch
Confidence 4444445566777789999999999999888888888775 478889999999999988887 5777432211 112
Q ss_pred HHhcCCChHHHHHHHHHHHHcCCCC--cHHHH------------HHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHh
Q 037414 167 ACRDRKDIVMGRLIHDIVLKSGLDI--DQFVC------------AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG 232 (577)
Q Consensus 167 ~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~------------~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~ 232 (577)
.+.+.|.++.|..-|+.+++..... ...++ ...+..+.-.|+...|......+.+-
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi---------- 184 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI---------- 184 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc----------
Confidence 3678899999999999998874211 11111 22233455567777777777766653
Q ss_pred cCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhc---cCCChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHH
Q 037414 233 ANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRM---RQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRI 307 (577)
Q Consensus 233 ~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 307 (577)
.+.|...+..-..+|...|++..|..=+... ...++...--+-..+-..|+.+.++...++.++ +.||..
T Consensus 185 ---~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK 257 (504)
T KOG0624|consen 185 ---QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHK 257 (504)
T ss_pred ---CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchh
Confidence 2346667777788888888888886555544 345666666677777788888888888887776 456654
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.63 E-value=5.5e-08 Score=59.70 Aligned_cols=34 Identities=35% Similarity=0.567 Sum_probs=30.1
Q ss_pred cCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCC
Q 037414 187 SGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMP 220 (577)
Q Consensus 187 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 220 (577)
.|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3788999999999999999999999999999884
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.62 E-value=5.4e-08 Score=59.74 Aligned_cols=34 Identities=26% Similarity=0.404 Sum_probs=30.0
Q ss_pred cCCCCCHHHHHHHHHHHHcCCChHHHHHHHhcCC
Q 037414 86 GGTLTNLIVANKLLYIYALHKALTDAHALFNGMK 119 (577)
Q Consensus 86 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~ 119 (577)
.|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4788999999999999999999999999999884
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.1e-05 Score=72.67 Aligned_cols=353 Identities=13% Similarity=0.062 Sum_probs=196.6
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 037414 73 IFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRC 152 (577)
Q Consensus 73 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 152 (577)
.++|..++..+.... .++..++-.|.-.+.-.|.+.+|..+-...++ ++..-..|.....+.++-++-..+-..+...
T Consensus 73 Y~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-~pL~~RLlfhlahklndEk~~~~fh~~LqD~ 150 (557)
T KOG3785|consen 73 YEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKAPK-TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT 150 (557)
T ss_pred HHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh
Confidence 555666665555533 33444444444444444566666665554432 2222333334444455544444443333321
Q ss_pred CCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHH-HHHHhCCCHHHHHHHHhhCCC--CC-hhHHH
Q 037414 153 GMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALV-DMYAKCKVIDDARQLFDQMPT--RD-LVTWT 228 (577)
Q Consensus 153 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~--~~-~~~~~ 228 (577)
..---+|.+..-..-.+++|..++.+++..+ |+....|.-+ -+|.|..-++-+.++++--.+ +| ++.-|
T Consensus 151 -----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~N 223 (557)
T KOG3785|consen 151 -----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKN 223 (557)
T ss_pred -----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHH
Confidence 1111223333333345778888888877653 4444444333 356677766666665543221 11 11111
Q ss_pred H-------HHhc--------------------------------CC------CCc-----chhhHHHHHHHHHhcCCHHH
Q 037414 229 V-------MIGA--------------------------------NK------FLL-----DVILGTAVIDMYAKCGSIDS 258 (577)
Q Consensus 229 ~-------~i~~--------------------------------~g------~~~-----~~~~~~~Li~~~~~~g~~~~ 258 (577)
. ++.| .+ +-| =+..--.|+-.|.+.+++.+
T Consensus 224 Lkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqe 303 (557)
T KOG3785|consen 224 LKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQE 303 (557)
T ss_pred HHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHH
Confidence 1 1111 00 111 12233456667889999999
Q ss_pred HHHHHHhccCCChhhHHHHHHHHHHcC-------ChHHHHHHHHHhhhCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHH
Q 037414 259 AREIFDRMRQKNVISWSAMIAAYGYHG-------QGKKALDLFPMMLSSRVLPNRI-TFVSLLYACSHTGLVEEGLRLFS 330 (577)
Q Consensus 259 A~~~~~~~~~~~~~~~~~li~~~~~~g-------~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~ 330 (577)
|..+.+++...++.-|-.-.-.++..| +..-|.+.|+-.-.++..-|.+ --.++.+++.-..++++...++.
T Consensus 304 A~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~Yln 383 (557)
T KOG3785|consen 304 AISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLN 383 (557)
T ss_pred HHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 999998886655444433333334443 3455777776665665554432 12234444445567888888888
Q ss_pred HhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CC-CCHhHHHHHH-HHHHhcCCHHHHHHHHHHHHhcC-CC
Q 037414 331 SMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMS-VE-KDEGLWGALL-GACRIHKNVDLAEMAAKSLLERQ-PQ 406 (577)
Q Consensus 331 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~-p~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~~~-p~ 406 (577)
.+ +.+=...|...+ -+.++++..|.+.+|+++|-.+. .+ .|..+|.+++ ++|.+.+..+.|..+ +++.+ |.
T Consensus 384 Si-~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~---~lk~~t~~ 458 (557)
T KOG3785|consen 384 SI-ESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDM---MLKTNTPS 458 (557)
T ss_pred HH-HHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHH---HHhcCCch
Confidence 88 444444444444 46788999999999999998873 11 3566777666 456778888877655 45554 33
Q ss_pred Cc-hhHHHHHHHHhccCChhHHHHHHHHHhhCCC
Q 037414 407 NP-GHYVLLSNVYANAGRWQDVAKIRDLMTRRRL 439 (577)
Q Consensus 407 ~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 439 (577)
+. .....+.+-|.+++.+--|.+.|+.+...+.
T Consensus 459 e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 459 ERFSLLQLIANDCYKANEFYYAAKAFDELEILDP 492 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC
Confidence 32 3345567789999999999999998876554
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=0.00012 Score=83.54 Aligned_cols=330 Identities=10% Similarity=-0.000 Sum_probs=209.6
Q ss_pred HHcCCChHHHHHHHhcCCC----CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCC--C----CCCcc--hHHHHHHHHh
Q 037414 102 YALHKALTDAHALFNGMKE----RDSVSWSVMVGGFSKVADFINCFETFREFIRCG--M----QLDSY--TLPFVIRACR 169 (577)
Q Consensus 102 ~~~~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~----~p~~~--t~~~ll~~~~ 169 (577)
....|+++.+...++.++. .+..........+...|++++|...+......- . .|... ....+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 4455777777777777642 133333344455667899999999988775431 1 11111 1112223356
Q ss_pred cCCChHHHHHHHHHHHHcCCCCc----HHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHH
Q 037414 170 DRKDIVMGRLIHDIVLKSGLDID----QFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTA 245 (577)
Q Consensus 170 ~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~ 245 (577)
..|+++.|...++...+.-...+ ....+.+...+...|++++|...+++........ ............
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~-------g~~~~~~~~~~~ 536 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQH-------DVYHYALWSLLQ 536 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh-------cchHHHHHHHHH
Confidence 78999999999988776321122 1344666677888999999999988765310000 000012235566
Q ss_pred HHHHHHhcCCHHHHHHHHHhccC-------CC----hhhHHHHHHHHHHcCChHHHHHHHHHhhhCC--CCCC--HHHHH
Q 037414 246 VIDMYAKCGSIDSAREIFDRMRQ-------KN----VISWSAMIAAYGYHGQGKKALDLFPMMLSSR--VLPN--RITFV 310 (577)
Q Consensus 246 Li~~~~~~g~~~~A~~~~~~~~~-------~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~--~~t~~ 310 (577)
+...+...|++++|...+++..+ ++ ...+..+...+...|++++|...+++..... ..+. ...+.
T Consensus 537 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 616 (903)
T PRK04841 537 QSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLA 616 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHH
Confidence 77888999999999998887543 11 1234455566777899999999998876531 1122 23444
Q ss_pred HHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHH-----HHHHHHHHHcCCHHHHHHHHHhCCC-C-CCH----hHHHH
Q 037414 311 SLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHY-----TCMVDLLGRAGRLDEALKLIESMSV-E-KDE----GLWGA 379 (577)
Q Consensus 311 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~-~-p~~----~~~~~ 379 (577)
.+.......|+.++|...+.....-.........+ ...+..+...|+.+.|.+++..... . ... ..+..
T Consensus 617 ~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~ 696 (903)
T PRK04841 617 MLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRN 696 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHH
Confidence 45667778899999999988875321111111111 1122445668999999999877621 1 111 12345
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcC------CCCchhHHHHHHHHhccCChhHHHHHHHHHhhCC
Q 037414 380 LLGACRIHKNVDLAEMAAKSLLERQ------PQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 380 ll~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
+..++...|+.++|...++++.+.. +....++..+..+|.+.|+.++|...+.+..+..
T Consensus 697 ~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 697 IARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 6667888999999999999987652 1123467778889999999999999999887643
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.2e-05 Score=75.92 Aligned_cols=362 Identities=11% Similarity=0.055 Sum_probs=210.0
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHhcCCC--CC-cchHHHHHHHHHhCCChhHHHHHHHHH
Q 037414 73 IFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKE--RD-SVSWSVMVGGFSKVADFINCFETFREF 149 (577)
Q Consensus 73 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m 149 (577)
++.|...|...+... ++|...|+.=..+|++.|++++|++=-.+-.+ |+ ...|+-...++.-.|++++|+.-|.+=
T Consensus 18 ~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~G 96 (539)
T KOG0548|consen 18 FETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSEG 96 (539)
T ss_pred HHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHHH
Confidence 888888888888776 66888888888999999999888775554433 32 336888888888889999999999887
Q ss_pred HHCCCCC-CcchHHHHHHHHhcCC---ChHHHHHHHHHHHHcC---CCCcHHHHHHHHHH----------HHhCCCHHHH
Q 037414 150 IRCGMQL-DSYTLPFVIRACRDRK---DIVMGRLIHDIVLKSG---LDIDQFVCAALVDM----------YAKCKVIDDA 212 (577)
Q Consensus 150 ~~~g~~p-~~~t~~~ll~~~~~~~---~~~~a~~~~~~~~~~g---~~~~~~~~~~li~~----------~~~~g~~~~A 212 (577)
++. .| |...++.+..++.... +.-..-.++..+...- .......|..++.. |....++..|
T Consensus 97 L~~--d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a 174 (539)
T KOG0548|consen 97 LEK--DPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKA 174 (539)
T ss_pred hhc--CCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHH
Confidence 764 34 4556666776661110 0000001111111100 00011122222222 2222223333
Q ss_pred HHHHhhCCCCChhHHHHHHhcCCCCc------------c----------hhhHHHHHHHHHhcCCHHHHHHHHHhccC--
Q 037414 213 RQLFDQMPTRDLVTWTVMIGANKFLL------------D----------VILGTAVIDMYAKCGSIDSAREIFDRMRQ-- 268 (577)
Q Consensus 213 ~~~~~~m~~~~~~~~~~~i~~~g~~~------------~----------~~~~~~Li~~~~~~g~~~~A~~~~~~~~~-- 268 (577)
..++......-...-..++...+..| | ..-...|.++.-+..+++.|.+-+....+
T Consensus 175 ~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~ 254 (539)
T KOG0548|consen 175 DGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA 254 (539)
T ss_pred HHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh
Confidence 33322211100000000000001111 1 11234566777777788888888877654
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCC--CH----HHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCH
Q 037414 269 KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLP--NR----ITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDV 342 (577)
Q Consensus 269 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~ 342 (577)
.++.-++....+|...|.+.+....-....+.|-.- |. ..+..+-.+|.+.++.+.+...|...+..+ ..|+.
T Consensus 255 ~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~-Rt~~~ 333 (539)
T KOG0548|consen 255 TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEH-RTPDL 333 (539)
T ss_pred hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhh-cCHHH
Confidence 344446666778888888877777766666654221 11 122223346666778888888888876553 23332
Q ss_pred HHHH-------------------------HHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHH
Q 037414 343 KHYT-------------------------CMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEM 395 (577)
Q Consensus 343 ~~~~-------------------------~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~ 395 (577)
..-. .-...+.+.|++..|.+.|.++ ...| |...|..-..+|.+.|.+..|+.
T Consensus 334 ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~ 413 (539)
T KOG0548|consen 334 LSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALK 413 (539)
T ss_pred HHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHH
Confidence 1100 0122345667788888877776 3345 55577777777888888888888
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCC
Q 037414 396 AAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 396 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
-.+..++++|+....|.-=..++....+|++|.+.|.+-.+.+
T Consensus 414 Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 414 DAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8888888888877777777777777778888887777665443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.6e-06 Score=90.73 Aligned_cols=199 Identities=15% Similarity=0.149 Sum_probs=170.2
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHhccC--------CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHH
Q 037414 239 DVILGTAVIDMYAKCGSIDSAREIFDRMRQ--------KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFV 310 (577)
Q Consensus 239 ~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 310 (577)
....|-..+......+++++|++++++... .-.-.|.++++.-...|.-+...++|+++.+.. -....|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 456777888889999999999999999864 123478899988888898899999999998752 1234678
Q ss_pred HHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC---CHhHHHHHHHHHHh
Q 037414 311 SLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK---DEGLWGALLGACRI 386 (577)
Q Consensus 311 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~~~~~~ll~~~~~ 386 (577)
.|...|.+.+..++|.++++.|.++++ -....|...++.+.+..+-++|..++.+. ..-| ........+..-.+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 899999999999999999999999876 66788999999999999999999999876 2233 44566667777789
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCCCcc
Q 037414 387 HKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKK 441 (577)
Q Consensus 387 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~ 441 (577)
+||.+.+..+|+..+...|.....|...++.-.+.|+.+.++.+|++....++.+
T Consensus 1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 9999999999999999999999999999999999999999999999999887743
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.9e-06 Score=85.83 Aligned_cols=222 Identities=15% Similarity=0.067 Sum_probs=176.4
Q ss_pred CCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhcc
Q 037414 188 GLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMR 267 (577)
Q Consensus 188 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~ 267 (577)
+++|-...-..+...+.+.|-...|..+|+++. .+..+|.+|...|+..+|..+..+-.
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erle---------------------mw~~vi~CY~~lg~~~kaeei~~q~l 451 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERLE---------------------MWDPVILCYLLLGQHGKAEEINRQEL 451 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------------------HHHHHHHHHHHhcccchHHHHHHHHh
Confidence 345666677788899999999999999999864 34557899999999999998887665
Q ss_pred C--CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHH
Q 037414 268 Q--KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHY 345 (577)
Q Consensus 268 ~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~ 345 (577)
+ ||...|..+.+......-+++|.++++..-.. .-..+.....+.++++++.+.|+.-.+-+.+ ...+|
T Consensus 452 ek~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl--q~~~w 522 (777)
T KOG1128|consen 452 EKDPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPL--QLGTW 522 (777)
T ss_pred cCCCcchhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCcc--chhHH
Confidence 4 77788888888887777888999988865432 1111222223478999999999877653222 35678
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC-CCCCCHh-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCC
Q 037414 346 TCMVDLLGRAGRLDEALKLIESM-SVEKDEG-LWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGR 423 (577)
Q Consensus 346 ~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 423 (577)
-.+-.+..+.++++.|.+.|... ...||.. .||.+-.+|.+.++-.+|...+.++++-+-.+...|...+-.-.+.|.
T Consensus 523 f~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge 602 (777)
T KOG1128|consen 523 FGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGE 602 (777)
T ss_pred HhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhccc
Confidence 88888888999999999999876 6678654 999999999999999999999999999887777777777888889999
Q ss_pred hhHHHHHHHHHhhCCC
Q 037414 424 WQDVAKIRDLMTRRRL 439 (577)
Q Consensus 424 ~~~A~~~~~~m~~~g~ 439 (577)
|++|.+.+.+|.+...
T Consensus 603 ~eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 603 FEDAIKAYHRLLDLRK 618 (777)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 9999999998876544
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.3e-05 Score=80.85 Aligned_cols=132 Identities=18% Similarity=0.176 Sum_probs=104.9
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC-HHHHHHHHHH
Q 037414 273 SWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD-VKHYTCMVDL 351 (577)
Q Consensus 273 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~ 351 (577)
.|......+...++.++|...+.+.... .+-....|......+...|..++|.+.|...+ .+.|+ +....++..+
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~~ 727 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAEL 727 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHHH
Confidence 3666677888889999998888777654 23334455555566777899999999999886 56776 6788899999
Q ss_pred HHHcCCHHHHHH--HHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 037414 352 LGRAGRLDEALK--LIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNP 408 (577)
Q Consensus 352 ~~~~g~~~~A~~--~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 408 (577)
+.+.|+..-|.+ ++..+ .+.| +...|-.+...+.+.|+.+.|.+.|.-..++++.+|
T Consensus 728 lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 728 LLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred HHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 999998877777 77777 5566 667999999999999999999999999999987665
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.51 E-value=0.00056 Score=69.57 Aligned_cols=358 Identities=11% Similarity=0.045 Sum_probs=223.8
Q ss_pred hHHHHHHhccC--hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhC
Q 037414 62 FFISSLLSCRN--IFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKE---RDSVSWSVMVGGFSKV 136 (577)
Q Consensus 62 ~~~~ll~a~~~--~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~ 136 (577)
-|-.++.++-. ...+......+++ +++-...+....--.+...|+-++|......-.. ++.+.|..+.-.+-..
T Consensus 10 lF~~~lk~yE~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~d 88 (700)
T KOG1156|consen 10 LFRRALKCYETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSD 88 (700)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhh
Confidence 35556665554 5566666666665 3343344444433445567899999888776554 3677899999888888
Q ss_pred CChhHHHHHHHHHHHCCCCCC-cchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHH
Q 037414 137 ADFINCFETFREFIRCGMQLD-SYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQL 215 (577)
Q Consensus 137 g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 215 (577)
.++++|++.|+..... .|| ...+.-+--.-++.++++.......++.+.. +.....|..+.-++.-.|+...|..+
T Consensus 89 K~Y~eaiKcy~nAl~~--~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~i 165 (700)
T KOG1156|consen 89 KKYDEAIKCYRNALKI--EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEI 165 (700)
T ss_pred hhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999874 454 4445444444466778887777777776653 45567788888888889999999998
Q ss_pred HhhCCCCChhHHHHHHhcCCCCcchhhHHHH------HHHHHhcCCHHHHHHHHHhccC--CChh-hHHHHHHHHHHcCC
Q 037414 216 FDQMPTRDLVTWTVMIGANKFLLDVILGTAV------IDMYAKCGSIDSAREIFDRMRQ--KNVI-SWSAMIAAYGYHGQ 286 (577)
Q Consensus 216 ~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~L------i~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~g~ 286 (577)
.++..+... ..|+...+.-. .....+.|..++|.+.+..-.. -|-. .--+....+.+.++
T Consensus 166 l~ef~~t~~-----------~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~ 234 (700)
T KOG1156|consen 166 LEEFEKTQN-----------TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQ 234 (700)
T ss_pred HHHHHHhhc-----------cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhh
Confidence 877654211 01222222211 2234567777887777766543 1222 22334566777888
Q ss_pred hHHHHHHHHHhhhCCCCCCHHHHHHHHH-HHh-ccCCHHHHHHHHHHhhHhc----------------------------
Q 037414 287 GKKALDLFPMMLSSRVLPNRITFVSLLY-ACS-HTGLVEEGLRLFSSMWDDF---------------------------- 336 (577)
Q Consensus 287 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~-a~~-~~g~~~~a~~~~~~m~~~~---------------------------- 336 (577)
.++|..++..++.. .||..-|...+. ++. -.+..+.-..+|....+.+
T Consensus 235 lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~ 312 (700)
T KOG1156|consen 235 LEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLR 312 (700)
T ss_pred HHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHH
Confidence 88888888888775 466655544433 332 2222222223344332211
Q ss_pred -----CCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHhC-C------------CCCCHhHHHHH--HHHHHhcCCHHH
Q 037414 337 -----AVRPDVKHYTCMVDLLGRAGRLDE----ALKLIESM-S------------VEKDEGLWGAL--LGACRIHKNVDL 392 (577)
Q Consensus 337 -----~~~p~~~~~~~li~~~~~~g~~~~----A~~~~~~m-~------------~~p~~~~~~~l--l~~~~~~g~~~~ 392 (577)
|+++ ++..+...|-.-...+- +..+...+ + -.|....|... ...+-..|+++.
T Consensus 313 ~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~ 389 (700)
T KOG1156|consen 313 PLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEV 389 (700)
T ss_pred HHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHH
Confidence 2221 12222222221111111 11122222 1 14566666554 455788999999
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCCC
Q 037414 393 AEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRL 439 (577)
Q Consensus 393 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 439 (577)
|....+.++..-|.-++.|..-++++...|.+++|..++++.++.+.
T Consensus 390 A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~ 436 (700)
T KOG1156|consen 390 ALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT 436 (700)
T ss_pred HHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999887553
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.6e-05 Score=74.83 Aligned_cols=182 Identities=11% Similarity=0.027 Sum_probs=121.9
Q ss_pred cchhhHHHHHHHHHhcCCHHHHHHHHHhccC--CCh----hhHHHHHHHHHHcCChHHHHHHHHHhhhCCCC-CCH-HHH
Q 037414 238 LDVILGTAVIDMYAKCGSIDSAREIFDRMRQ--KNV----ISWSAMIAAYGYHGQGKKALDLFPMMLSSRVL-PNR-ITF 309 (577)
Q Consensus 238 ~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~-~t~ 309 (577)
.....+..+...|.+.|++++|...|+++.. |+. ..+..+...|.+.|++++|...++++.+.... |.. .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 4566777788888888888888888887764 321 35667778888888888888888888765321 111 133
Q ss_pred HHHHHHHhcc--------CCHHHHHHHHHHhhHhcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHH
Q 037414 310 VSLLYACSHT--------GLVEEGLRLFSSMWDDFAVRPDV-KHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGAL 380 (577)
Q Consensus 310 ~~ll~a~~~~--------g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l 380 (577)
..+..++... |+.++|.+.++.+++. .|+. ..+..+... +...... ......+
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~~-----------~~~~~~~ 172 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNRL-----------AGKELYV 172 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHHH-----------HHHHHHH
Confidence 3444444443 6677788888877643 3432 222222111 0011000 0011245
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCC---chhHHHHHHHHhccCChhHHHHHHHHHhhC
Q 037414 381 LGACRIHKNVDLAEMAAKSLLERQPQN---PGHYVLLSNVYANAGRWQDVAKIRDLMTRR 437 (577)
Q Consensus 381 l~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 437 (577)
...+...|++++|...++++++..|++ +..+..++.+|.+.|++++|..+++.+..+
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 566888999999999999999987765 468899999999999999999999888754
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.00048 Score=78.67 Aligned_cols=326 Identities=8% Similarity=-0.009 Sum_probs=194.6
Q ss_pred HHcCCChHHHHHHHhcCCCCCcch--HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCChHHHHH
Q 037414 102 YALHKALTDAHALFNGMKERDSVS--WSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRL 179 (577)
Q Consensus 102 ~~~~g~~~~A~~~f~~m~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 179 (577)
|...|++.+|..........+... ...........|+++.+...++.+.......+..........+...++++++..
T Consensus 351 ~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~ 430 (903)
T PRK04841 351 WLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNT 430 (903)
T ss_pred HHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHH
Confidence 344455555555444443321111 111122344567777777766665322111222333334444567789999998
Q ss_pred HHHHHHHcCC------CCc--HHHHHHHHHHHHhCCCHHHHHHHHhhCCCC--ChhHHHHHHhcCCCCcchhhHHHHHHH
Q 037414 180 IHDIVLKSGL------DID--QFVCAALVDMYAKCKVIDDARQLFDQMPTR--DLVTWTVMIGANKFLLDVILGTAVIDM 249 (577)
Q Consensus 180 ~~~~~~~~g~------~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~i~~~g~~~~~~~~~~Li~~ 249 (577)
.+....+.-- .+. ......+...+...|++++|...+++..+. ....+. -....+.+...
T Consensus 431 ~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----------~~~a~~~lg~~ 500 (903)
T PRK04841 431 LLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYS----------RIVATSVLGEV 500 (903)
T ss_pred HHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHH----------HHHHHHHHHHH
Confidence 8887755311 111 122233445667899999999998875431 100000 12245667778
Q ss_pred HHhcCCHHHHHHHHHhccC-------CC--hhhHHHHHHHHHHcCChHHHHHHHHHhhhC----CCC--C-CHHHHHHHH
Q 037414 250 YAKCGSIDSAREIFDRMRQ-------KN--VISWSAMIAAYGYHGQGKKALDLFPMMLSS----RVL--P-NRITFVSLL 313 (577)
Q Consensus 250 ~~~~g~~~~A~~~~~~~~~-------~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~--p-~~~t~~~ll 313 (577)
+...|++++|...+++... +. ..++..+...+...|++++|...+++.... |.. | ....+..+.
T Consensus 501 ~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 580 (903)
T PRK04841 501 HHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRA 580 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence 8899999999999988753 11 234555667788899999999998886652 221 1 223344455
Q ss_pred HHHhccCCHHHHHHHHHHhhHhcC-CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCCHhHHH-----HHH
Q 037414 314 YACSHTGLVEEGLRLFSSMWDDFA-VRP--DVKHYTCMVDLLGRAGRLDEALKLIESM----SVEKDEGLWG-----ALL 381 (577)
Q Consensus 314 ~a~~~~g~~~~a~~~~~~m~~~~~-~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~-----~ll 381 (577)
..+...|++++|...+........ ..+ ....+..+...+...|+.++|.+.+++. ........+. ..+
T Consensus 581 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 660 (903)
T PRK04841 581 QLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRL 660 (903)
T ss_pred HHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHH
Confidence 566778999999999888754211 112 2334445566788899999999888776 1111111111 122
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCchh----HHHHHHHHhccCChhHHHHHHHHHhhC
Q 037414 382 GACRIHKNVDLAEMAAKSLLERQPQNPGH----YVLLSNVYANAGRWQDVAKIRDLMTRR 437 (577)
Q Consensus 382 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~----~~~l~~~~~~~g~~~~A~~~~~~m~~~ 437 (577)
..+...|+.+.|...+.......+..... +..+..++...|++++|...+.+....
T Consensus 661 ~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 661 IYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNEN 720 (903)
T ss_pred HHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34556889999998877765433222211 456788899999999999999887653
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00038 Score=73.95 Aligned_cols=309 Identities=13% Similarity=0.094 Sum_probs=167.2
Q ss_pred HHHHHHHHHHcCCC--CCHHHHHHHHHHHHcCCChHHHHHHHhcCC-CCCcc-----hHHHHHHHHHhCCChhHHHHHHH
Q 037414 76 IRQVHAQIVAGGTL--TNLIVANKLLYIYALHKALTDAHALFNGMK-ERDSV-----SWSVMVGGFSKVADFINCFETFR 147 (577)
Q Consensus 76 a~~~~~~~~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~f~~m~-~~~~~-----~~~~li~~~~~~g~~~~A~~~~~ 147 (577)
-+++.++.++.+++ .|+.-.+.-+.++...+-..+-.++++++. +++++ .-|.||-...+. +..++.+..+
T Consensus 966 rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~ 1044 (1666)
T KOG0985|consen 966 RRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYIN 1044 (1666)
T ss_pred HHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHH
Confidence 35777888877763 467777778899999999999999998874 33222 344444443333 3345555555
Q ss_pred HHHHCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHcC---------------------CCCcHHHHHHHHHHHHhC
Q 037414 148 EFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSG---------------------LDIDQFVCAALVDMYAKC 206 (577)
Q Consensus 148 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g---------------------~~~~~~~~~~li~~~~~~ 206 (577)
++-... .|+ +...+...+-+++|..+|......+ -.....+|+.+..+-.+.
T Consensus 1045 rLdnyD-a~~------ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~ 1117 (1666)
T KOG0985|consen 1045 RLDNYD-APD------IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQG 1117 (1666)
T ss_pred HhccCC-chh------HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhc
Confidence 544321 112 2222333344455555554321000 001223444555555555
Q ss_pred CCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC--CChhhHHHHHHHHHHc
Q 037414 207 KVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ--KNVISWSAMIAAYGYH 284 (577)
Q Consensus 207 g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~ 284 (577)
|.+.+|.+-|-+.. |+..|..+++...+.|.+++-.+.+....+ +....=+.+|-+|++.
T Consensus 1118 ~~v~dAieSyikad------------------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt 1179 (1666)
T KOG0985|consen 1118 GLVKDAIESYIKAD------------------DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKT 1179 (1666)
T ss_pred CchHHHHHHHHhcC------------------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHh
Confidence 55555544443322 334455566666666666666655544432 2222334566666666
Q ss_pred CChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 037414 285 GQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKL 364 (577)
Q Consensus 285 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 364 (577)
++..+..+++ .-||......+-+-|...|.++.|.-+|... ..|..|...+...|.++.|.+.
T Consensus 1180 ~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v----------SN~a~La~TLV~LgeyQ~AVD~ 1242 (1666)
T KOG0985|consen 1180 NRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV----------SNFAKLASTLVYLGEYQGAVDA 1242 (1666)
T ss_pred chHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh----------hhHHHHHHHHHHHHHHHHHHHH
Confidence 6655544443 2455555555666666666666666555544 2355566666667777766665
Q ss_pred HHhCCCCCCHhHHH------------------------------HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 037414 365 IESMSVEKDEGLWG------------------------------ALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLL 414 (577)
Q Consensus 365 ~~~m~~~p~~~~~~------------------------------~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 414 (577)
-++.. +..+|. -|+..|...|-+++.+.+++..+.++......|..|
T Consensus 1243 aRKAn---s~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTEL 1319 (1666)
T KOG0985|consen 1243 ARKAN---STKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTEL 1319 (1666)
T ss_pred hhhcc---chhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHH
Confidence 55442 333444 445555556666666666666666666666677777
Q ss_pred HHHHhccCChhHHHHHH
Q 037414 415 SNVYANAGRWQDVAKIR 431 (577)
Q Consensus 415 ~~~~~~~g~~~~A~~~~ 431 (577)
.-.|++- ++++..+-+
T Consensus 1320 aiLYsky-kp~km~EHl 1335 (1666)
T KOG0985|consen 1320 AILYSKY-KPEKMMEHL 1335 (1666)
T ss_pred HHHHHhc-CHHHHHHHH
Confidence 7777654 334433333
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.00029 Score=74.80 Aligned_cols=310 Identities=15% Similarity=0.171 Sum_probs=209.9
Q ss_pred HHHHhccChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHhcC-----CC-CCcchHHHHHHHHHhCCC
Q 037414 65 SSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGM-----KE-RDSVSWSVMVGGFSKVAD 138 (577)
Q Consensus 65 ~ll~a~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m-----~~-~~~~~~~~li~~~~~~g~ 138 (577)
-+++.|..-...+..-+.+++ ..|...|+.++.- .-.--+++.++. ++ .|+..-..-+.++...+-
T Consensus 928 elI~vcNeNSlfK~~aRYlv~---R~D~~LW~~VL~e-----~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadL 999 (1666)
T KOG0985|consen 928 ELINVCNENSLFKSQARYLVE---RSDPDLWAKVLNE-----ENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADL 999 (1666)
T ss_pred HHHHhcCchhHHHHHHHHHHh---ccChHHHHHHHhc-----cChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCC
Confidence 356666653333344444544 3467777776631 111112233332 22 366667778899999999
Q ss_pred hhHHHHHHHHHHHCC-CCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHh
Q 037414 139 FINCFETFREFIRCG-MQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFD 217 (577)
Q Consensus 139 ~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 217 (577)
+.+-++++++..-.. .-........|+-.-+-.-+..++....+++.... .|+ ........+-+++|..+|+
T Consensus 1000 p~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyD-a~~------ia~iai~~~LyEEAF~ifk 1072 (1666)
T KOG0985|consen 1000 PNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYD-APD------IAEIAIENQLYEEAFAIFK 1072 (1666)
T ss_pred cHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCC-chh------HHHHHhhhhHHHHHHHHHH
Confidence 999999999987432 11112223333333333445666777777665543 222 3344556677899999998
Q ss_pred hCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHh
Q 037414 218 QMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMM 297 (577)
Q Consensus 218 ~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 297 (577)
+..- +....+.||+ ..+.+|.|.+.-++..+|. .|..+..+-.+.|...+|++-|-+.
T Consensus 1073 kf~~-----------------n~~A~~VLie---~i~~ldRA~efAe~~n~p~--vWsqlakAQL~~~~v~dAieSyika 1130 (1666)
T KOG0985|consen 1073 KFDM-----------------NVSAIQVLIE---NIGSLDRAYEFAERCNEPA--VWSQLAKAQLQGGLVKDAIESYIKA 1130 (1666)
T ss_pred Hhcc-----------------cHHHHHHHHH---HhhhHHHHHHHHHhhCChH--HHHHHHHHHHhcCchHHHHHHHHhc
Confidence 7543 3333444443 4678899988888887664 6899999999999999999988654
Q ss_pred hhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHH
Q 037414 298 LSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLW 377 (577)
Q Consensus 298 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~ 377 (577)
-|+..|..++..+.+.|.+++-.+++....++ .-.|.+. +.||-+|++.+++.+-++++. -||..-.
T Consensus 1131 ------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i 1197 (1666)
T KOG0985|consen 1131 ------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANI 1197 (1666)
T ss_pred ------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhH
Confidence 26678999999999999999999988877554 5556554 578999999999999887764 3777777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHH
Q 037414 378 GALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRD 432 (577)
Q Consensus 378 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 432 (577)
..+..-|...|.++.|.-++..+ +.|..|...+...|.+..|...-+
T Consensus 1198 ~~vGdrcf~~~~y~aAkl~y~~v--------SN~a~La~TLV~LgeyQ~AVD~aR 1244 (1666)
T KOG0985|consen 1198 QQVGDRCFEEKMYEAAKLLYSNV--------SNFAKLASTLVYLGEYQGAVDAAR 1244 (1666)
T ss_pred HHHhHHHhhhhhhHHHHHHHHHh--------hhHHHHHHHHHHHHHHHHHHHHhh
Confidence 78888888888888888777643 466777777777777777765543
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.8e-05 Score=69.63 Aligned_cols=118 Identities=9% Similarity=0.058 Sum_probs=87.6
Q ss_pred cCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHH-HHhcCC--HHHH
Q 037414 319 TGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGA-CRIHKN--VDLA 393 (577)
Q Consensus 319 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~-~~~~g~--~~~a 393 (577)
.++.+++...++..++. -+.+...|..+...|...|++++|...|++. ...| +...+..+..+ +...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 55566666666666542 2445777888888888888888888888877 4455 45566666665 356666 4888
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCC
Q 037414 394 EMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 394 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
.++++++++.+|+++.++..+...+...|++++|...++++.+..
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 888888888888888888888888888888888888888887644
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00011 Score=75.17 Aligned_cols=166 Identities=18% Similarity=0.273 Sum_probs=88.2
Q ss_pred HHHHHhcCCHHHHHHHHHhccCCChhh--HHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHH
Q 037414 247 IDMYAKCGSIDSAREIFDRMRQKNVIS--WSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEE 324 (577)
Q Consensus 247 i~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 324 (577)
|.+......+.+|..+++.+++.++.+ |..+...|+..|+++.|.++|.+.- .|+-.|..|.+.|.++.
T Consensus 739 ieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHH
Confidence 334444555666666666555433332 4445556666666666666664431 13334555666666666
Q ss_pred HHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHh---------------------------HH
Q 037414 325 GLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEG---------------------------LW 377 (577)
Q Consensus 325 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~---------------------------~~ 377 (577)
|.++-.+.. |-......|-+-..-+-+.|++.+|++++-.++ .|+.. |-
T Consensus 810 a~kla~e~~---~~e~t~~~yiakaedldehgkf~eaeqlyiti~-~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~ 885 (1636)
T KOG3616|consen 810 AFKLAEECH---GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG-EPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTH 885 (1636)
T ss_pred HHHHHHHhc---CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-CchHHHHHHHhhCcchHHHHHHHHhChhhhhHHH
Confidence 655554432 333444455444455555555555555555444 33321 22
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHH
Q 037414 378 GALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDL 433 (577)
Q Consensus 378 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 433 (577)
..+..-+...|+...|+..|-+ ..-|..-+++|...+.|++|.++-+.
T Consensus 886 ~~f~~e~e~~g~lkaae~~fle--------a~d~kaavnmyk~s~lw~dayriakt 933 (1636)
T KOG3616|consen 886 KHFAKELEAEGDLKAAEEHFLE--------AGDFKAAVNMYKASELWEDAYRIAKT 933 (1636)
T ss_pred HHHHHHHHhccChhHHHHHHHh--------hhhHHHHHHHhhhhhhHHHHHHHHhc
Confidence 2233333444444444443322 23466778888888999988887653
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.00011 Score=76.11 Aligned_cols=286 Identities=12% Similarity=0.098 Sum_probs=183.0
Q ss_pred CCHHHHHHHHH--HHHcCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHC-C--------CCCCc
Q 037414 90 TNLIVANKLLY--IYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRC-G--------MQLDS 158 (577)
Q Consensus 90 ~~~~~~~~li~--~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g--------~~p~~ 158 (577)
-|..+-.++++ .|..-|++|.|.+-..-++ +-..|..|.+.+.+..+.+-|.-.+-.|... | -.|+
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~- 800 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE- 800 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-
Confidence 35666667664 5778899999988877765 4567999999999998888887777666431 1 1232
Q ss_pred chHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCc
Q 037414 159 YTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLL 238 (577)
Q Consensus 159 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~ 238 (577)
.+=.-+.-.....|.+++|+.+|.+-.+. ..|=..|-..|++++|.++-+.= |.+.
T Consensus 801 e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~---DRiH------------ 856 (1416)
T KOG3617|consen 801 EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETK---DRIH------------ 856 (1416)
T ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhc---ccee------------
Confidence 22223333356778999999999987764 33456788899999999886532 2211
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHhccC-----------------------CChhhHHHHHHHHHHcCChHHHHHHHH
Q 037414 239 DVILGTAVIDMYAKCGSIDSAREIFDRMRQ-----------------------KNVISWSAMIAAYGYHGQGKKALDLFP 295 (577)
Q Consensus 239 ~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~-----------------------~~~~~~~~li~~~~~~g~~~~A~~l~~ 295 (577)
=..+|.....-+-..++.+.|++.|++... +|...|.-....+-..|+.+.|+.+|.
T Consensus 857 Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~ 936 (1416)
T KOG3617|consen 857 LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYS 936 (1416)
T ss_pred hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHH
Confidence 112444555556667888888888877542 344445555555666778888887777
Q ss_pred HhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHh
Q 037414 296 MMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEG 375 (577)
Q Consensus 296 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~ 375 (577)
.... |-+++...|-.|+.++|-++-++- -|......|...|-..|++.+|..+|.+..
T Consensus 937 ~A~D---------~fs~VrI~C~qGk~~kAa~iA~es-------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq------ 994 (1416)
T KOG3617|consen 937 SAKD---------YFSMVRIKCIQGKTDKAARIAEES-------GDKAACYHLARMYENDGDVVKAVKFFTRAQ------ 994 (1416)
T ss_pred Hhhh---------hhhheeeEeeccCchHHHHHHHhc-------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH------
Confidence 6653 445666667778888887776644 233444567788888888888888887752
Q ss_pred HHHHHHHHHHhcCCHH---------------HHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHH
Q 037414 376 LWGALLGACRIHKNVD---------------LAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIR 431 (577)
Q Consensus 376 ~~~~ll~~~~~~g~~~---------------~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 431 (577)
++...|+.|..++--+ .|-++|++. +....-.+..|-++|.+.+|+++-
T Consensus 995 afsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~-------g~~~~~AVmLYHkAGm~~kALelA 1058 (1416)
T KOG3617|consen 995 AFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL-------GGYAHKAVMLYHKAGMIGKALELA 1058 (1416)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc-------chhhhHHHHHHHhhcchHHHHHHH
Confidence 2333444444333222 222222221 112334556788888888887763
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.35 E-value=8.2e-05 Score=68.32 Aligned_cols=394 Identities=10% Similarity=-0.021 Sum_probs=217.3
Q ss_pred hhhHHHhhccCCCCCCCCCcccCccCCCCCCCCCCCChhhHHHHHHhccC----hHHHHHHHHHHHHcCCCCCHHHHHH-
Q 037414 23 STTAAIALEPHGHEQNPMNPRVPMQMGPDCQFTRSVDPKFFISSLLSCRN----IFQIRQVHAQIVAGGTLTNLIVANK- 97 (577)
Q Consensus 23 ~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~a~~~----~~~a~~~~~~~~~~g~~~~~~~~~~- 97 (577)
+++.+-.+.+..+++.|++++..-.+. .|....=.++|.-|-- +..|...++++-.. .|...-|.-
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er-------~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY 83 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELER-------SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLY 83 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhc-------CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHH
Confidence 445566667777888888877665544 4433334445555543 66677777777543 233222221
Q ss_pred HHHHHHcCCChHHHHHHHhcCCCC-CcchHHHHHH--HHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCCh
Q 037414 98 LLYIYALHKALTDAHALFNGMKER-DSVSWSVMVG--GFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDI 174 (577)
Q Consensus 98 li~~~~~~g~~~~A~~~f~~m~~~-~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 174 (577)
-...+-+.+.+.+|+++...|... +...-..-+. ..-+.+++..+..+.++....| +..+.+......-+.|+.
T Consensus 84 ~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqy 160 (459)
T KOG4340|consen 84 QAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQY 160 (459)
T ss_pred HHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccH
Confidence 123344677888999988888763 2222111122 2334677778888877766432 334444444444678999
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhc---CCCC----cc--------
Q 037414 175 VMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA---NKFL----LD-------- 239 (577)
Q Consensus 175 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~---~g~~----~~-------- 239 (577)
+.|.+-|+...+-+--.....||.-+ +..+.|+.+.|.+...++.++++....-+--| .|+. .|
T Consensus 161 EaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sa 239 (459)
T KOG4340|consen 161 EAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSA 239 (459)
T ss_pred HHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHH
Confidence 99999998877754333345666544 45567889999988877754322110000000 0000 00
Q ss_pred -hhhHHHHHHHHHhcCCHHHHHHHHHhccC-----CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 037414 240 -VILGTAVIDMYAKCGSIDSAREIFDRMRQ-----KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLL 313 (577)
Q Consensus 240 -~~~~~~Li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 313 (577)
+..+|.-...+.+.|+.+.|.+.+-.|+. .|++|...+.-.- ..+++.+..+-+.-+...+. ....||..++
T Consensus 240 l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlL 317 (459)
T KOG4340|consen 240 LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLL 317 (459)
T ss_pred HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHH
Confidence 22344445557789999999999999974 4677765553322 24455555555555555533 3457899999
Q ss_pred HHHhccCCHHHHHHHHHHhhHhcCCC-CCHHHHHHHHHHHHH-cCCHHHHHHHHHhCCCCCC--HhHHHHHHHHHHhcCC
Q 037414 314 YACSHTGLVEEGLRLFSSMWDDFAVR-PDVKHYTCMVDLLGR-AGRLDEALKLIESMSVEKD--EGLWGALLGACRIHKN 389 (577)
Q Consensus 314 ~a~~~~g~~~~a~~~~~~m~~~~~~~-p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~p~--~~~~~~ll~~~~~~g~ 389 (577)
-.||+..-++.|-.++.+-.. ...+ .+...|+ |++++.- .-..++|++-++.+...-. ......-+.--...++
T Consensus 318 llyCKNeyf~lAADvLAEn~~-lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~d 395 (459)
T KOG4340|consen 318 LLYCKNEYFDLAADVLAENAH-LTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRD 395 (459)
T ss_pred HHHhhhHHHhHHHHHHhhCcc-hhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999888887764321 1111 1233333 3333332 3456667665555410000 0011111111111221
Q ss_pred ---HHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhh
Q 037414 390 ---VDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTR 436 (577)
Q Consensus 390 ---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 436 (577)
...+.+-+++.+++.-+ ....-...|.+..++..+.++|..-.+
T Consensus 396 d~a~R~ai~~Yd~~LE~YLP---VlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 396 DEAIRKAVNEYDETLEKYLP---VLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHhhccccccHHHHHHHHHHHh
Confidence 11222333344433221 334455678889999999999977654
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.35 E-value=7.9e-05 Score=81.58 Aligned_cols=218 Identities=14% Similarity=0.101 Sum_probs=171.3
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHhcCCCC--------CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCc-c
Q 037414 89 LTNLIVANKLLYIYALHKALTDAHALFNGMKER--------DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDS-Y 159 (577)
Q Consensus 89 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~ 159 (577)
+.+...|-.-|......++.+.|++++++.... -...|.+++..-..-|.-+...++|++..+.. |+ .
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc---d~~~ 1531 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC---DAYT 1531 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc---chHH
Confidence 566778988999999999999999999987642 24468888888888888889999999998852 33 3
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcc
Q 037414 160 TLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLD 239 (577)
Q Consensus 160 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~ 239 (577)
.|..|...|.+.+..++|-++++.|.+. +.....+|...++.+.+..+-+.|..++.+..+--+ -.-.
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lP-----------k~eH 1599 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLP-----------KQEH 1599 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcc-----------hhhh
Confidence 4778888899999999999999999886 446788999999999999999999999887643100 0113
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHH--HHHHHHH
Q 037414 240 VILGTAVIDMYAKCGSIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRI--TFVSLLY 314 (577)
Q Consensus 240 ~~~~~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~ 314 (577)
.......+.+-.++|+.+.++.+|+.... +-.-.|+..|+.-.++|+.+.+..+|++....++.|-.. .|.-.+.
T Consensus 1600 v~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLe 1679 (1710)
T KOG1070|consen 1600 VEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLE 1679 (1710)
T ss_pred HHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHH
Confidence 44556677788899999999999999874 345689999999999999999999999999988777543 3444443
Q ss_pred HHhccCC
Q 037414 315 ACSHTGL 321 (577)
Q Consensus 315 a~~~~g~ 321 (577)
.=.+.|+
T Consensus 1680 yEk~~Gd 1686 (1710)
T KOG1070|consen 1680 YEKSHGD 1686 (1710)
T ss_pred HHHhcCc
Confidence 3333343
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.34 E-value=5.1e-05 Score=71.39 Aligned_cols=144 Identities=17% Similarity=0.107 Sum_probs=98.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhccC--CC-hh---hHHHHHHHHHHc--------CChHHHHHHHHHhhhCCCCCCH
Q 037414 241 ILGTAVIDMYAKCGSIDSAREIFDRMRQ--KN-VI---SWSAMIAAYGYH--------GQGKKALDLFPMMLSSRVLPNR 306 (577)
Q Consensus 241 ~~~~~Li~~~~~~g~~~~A~~~~~~~~~--~~-~~---~~~~li~~~~~~--------g~~~~A~~l~~~m~~~g~~p~~ 306 (577)
..+..+..+|.+.|++++|...|+++.+ |+ .. .+..+...+.+. |+.++|.+.|+++... .|+.
T Consensus 71 ~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~ 148 (235)
T TIGR03302 71 QAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNS 148 (235)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCC
Confidence 4678889999999999999999999864 32 22 455555666654 7789999999999875 3443
Q ss_pred H-HHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC----CCCC-CHhHHHHH
Q 037414 307 I-TFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM----SVEK-DEGLWGAL 380 (577)
Q Consensus 307 ~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~l 380 (577)
. ....+... +... ... . .....+...|.+.|++++|...+++. +-.| ....|..+
T Consensus 149 ~~~~~a~~~~----~~~~------~~~-~--------~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l 209 (235)
T TIGR03302 149 EYAPDAKKRM----DYLR------NRL-A--------GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARL 209 (235)
T ss_pred hhHHHHHHHH----HHHH------HHH-H--------HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHH
Confidence 2 22111111 0000 000 0 11124556788999999999988887 2223 24588889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCC
Q 037414 381 LGACRIHKNVDLAEMAAKSLLERQP 405 (577)
Q Consensus 381 l~~~~~~g~~~~a~~~~~~~~~~~p 405 (577)
..++...|+.++|...++.+....|
T Consensus 210 ~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 210 VEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 9999999999999999888877665
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=4.5e-05 Score=81.82 Aligned_cols=131 Identities=11% Similarity=0.067 Sum_probs=72.1
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC-HHHHHHH
Q 037414 271 VISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNR-ITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD-VKHYTCM 348 (577)
Q Consensus 271 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l 348 (577)
+..+-.|.....+.|.+++|..+++...+ +.||. .....+...+.+.+.+++|....+..+. ..|+ ......+
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~~~ 160 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREILLE 160 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHHHH
Confidence 44455555555566666666666666555 24443 2344455556666666666666665542 2332 4444555
Q ss_pred HHHHHHcCCHHHHHHHHHhCC-CCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 037414 349 VDLLGRAGRLDEALKLIESMS-VEKD-EGLWGALLGACRIHKNVDLAEMAAKSLLERQPQ 406 (577)
Q Consensus 349 i~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 406 (577)
..++.+.|++++|..+|++.- ..|+ ..+|.++..++...|+.++|...|+++++...+
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~ 220 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGD 220 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc
Confidence 555666666666666666651 2232 345555666666666666666666666655433
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00032 Score=71.96 Aligned_cols=289 Identities=12% Similarity=0.109 Sum_probs=197.6
Q ss_pred HHHHcCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCChHHHHH
Q 037414 100 YIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRL 179 (577)
Q Consensus 100 ~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 179 (577)
.-+...|+++.|..-|-+.. ..-..|.+......+.+|+.+++.+..... -.-.|..+.+-|+..|+++.|.+
T Consensus 714 ~hl~~~~q~daainhfiea~-----~~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~ 786 (1636)
T KOG3616|consen 714 DHLEQIGQLDAAINHFIEAN-----CLIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEE 786 (1636)
T ss_pred HHHHHHHhHHHHHHHHHHhh-----hHHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHH
Confidence 33445688888888775432 122345566778899999999998887533 34457788888999999999999
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHH
Q 037414 180 IHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSA 259 (577)
Q Consensus 180 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A 259 (577)
+|.+. + .++-.|++|.+.|++++|.++-.+...|.. ....|-+-..-.-+.|++.+|
T Consensus 787 lf~e~---~------~~~dai~my~k~~kw~da~kla~e~~~~e~--------------t~~~yiakaedldehgkf~ea 843 (1636)
T KOG3616|consen 787 LFTEA---D------LFKDAIDMYGKAGKWEDAFKLAEECHGPEA--------------TISLYIAKAEDLDEHGKFAEA 843 (1636)
T ss_pred HHHhc---c------hhHHHHHHHhccccHHHHHHHHHHhcCchh--------------HHHHHHHhHHhHHhhcchhhh
Confidence 98643 2 356688999999999999999888765432 334566666777789999999
Q ss_pred HHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCC
Q 037414 260 REIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVR 339 (577)
Q Consensus 260 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 339 (577)
.++|-.+..|+. .|..|-++|..+..+++..+-.-. .-..|-..+..-+...|++..|..-|-+.-
T Consensus 844 eqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~------ 909 (1636)
T KOG3616|consen 844 EQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAG------ 909 (1636)
T ss_pred hheeEEccCchH-----HHHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhh------
Confidence 999998888874 578899999999998888764321 112455667777888899999988777652
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCC---C-CHhHHHHH------HHHHHhcCCHHH-------------HHHH
Q 037414 340 PDVKHYTCMVDLLGRAGRLDEALKLIESMSVE---K-DEGLWGAL------LGACRIHKNVDL-------------AEMA 396 (577)
Q Consensus 340 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---p-~~~~~~~l------l~~~~~~g~~~~-------------a~~~ 396 (577)
-|.+-+.+|-..+.|++|.++-+.-+-. . -...|..- +..+.++|-.+. |..+
T Consensus 910 ----d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdl 985 (1636)
T KOG3616|consen 910 ----DFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDL 985 (1636)
T ss_pred ----hHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHH
Confidence 2566778888888999998887665211 0 11133221 122334444333 3333
Q ss_pred HHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCC
Q 037414 397 AKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 397 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
.+-..+.. -+....-+..-+...|++++|.+-+-+..+.+
T Consensus 986 ari~~k~k--~~~vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 986 ARIAAKDK--MGEVHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred HHHhhhcc--CccchhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence 33332222 23345556667788899999988777666544
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.3e-05 Score=68.58 Aligned_cols=90 Identities=11% Similarity=-0.083 Sum_probs=54.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCCh
Q 037414 347 CMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRW 424 (577)
Q Consensus 347 ~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 424 (577)
.+...+...|++++|...|+.. ...| +...|..+..++...|++++|...++++.+.+|.++.++..+..++...|++
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~ 108 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEP 108 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCH
Confidence 3445555666666666666555 3333 3445566666666666666666666666666666666666666666666666
Q ss_pred hHHHHHHHHHhh
Q 037414 425 QDVAKIRDLMTR 436 (577)
Q Consensus 425 ~~A~~~~~~m~~ 436 (577)
++|...++...+
T Consensus 109 ~eAi~~~~~Al~ 120 (144)
T PRK15359 109 GLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHHH
Confidence 666666665554
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00013 Score=79.17 Aligned_cols=147 Identities=14% Similarity=0.159 Sum_probs=92.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhc
Q 037414 242 LGTAVIDMYAKCGSIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSH 318 (577)
Q Consensus 242 ~~~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 318 (577)
.+..|..+|-+.|+.++|..+++++.+ .|+...|.+...|+.. +.++|.+++.+.+.. +..
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~ 181 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FIK 181 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HHh
Confidence 445566666666777777766666654 3455666666666666 666666666665432 334
Q ss_pred cCCHHHHHHHHHHhhHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHH
Q 037414 319 TGLVEEGLRLFSSMWDDFAVRPD-VKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAA 397 (577)
Q Consensus 319 ~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 397 (577)
..++..+.++|..++.. .|+ ...+--+.. ++...++...-..++-.+-..|...++++++..++
T Consensus 182 ~kq~~~~~e~W~k~~~~---~~~d~d~f~~i~~------------ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iL 246 (906)
T PRK14720 182 KKQYVGIEEIWSKLVHY---NSDDFDFFLRIER------------KVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYIL 246 (906)
T ss_pred hhcchHHHHHHHHHHhc---CcccchHHHHHHH------------HHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 45666666666666531 222 111111111 11112222334556777778889999999999999
Q ss_pred HHHHhcCCCCchhHHHHHHHHh
Q 037414 398 KSLLERQPQNPGHYVLLSNVYA 419 (577)
Q Consensus 398 ~~~~~~~p~~~~~~~~l~~~~~ 419 (577)
+.+++.+|.|..+..-++..|.
T Consensus 247 K~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 247 KKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHhcCCcchhhHHHHHHHHH
Confidence 9999999999888888888887
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.0002 Score=69.83 Aligned_cols=217 Identities=13% Similarity=0.085 Sum_probs=139.1
Q ss_pred HHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcC-CHHHHHHHHHhccC---CChhhHHHHH
Q 037414 203 YAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCG-SIDSAREIFDRMRQ---KNVISWSAMI 278 (577)
Q Consensus 203 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li 278 (577)
+...++.++|..+.+++.+.++. +..+|+....++.+.| ++++++..++++.+ ++...|+...
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~-------------~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~ 113 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPG-------------NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRR 113 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCch-------------hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHH
Confidence 33445666666666665543332 2234444444555556 56788888877664 4455676555
Q ss_pred HHHHHcCCh--HHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHc-
Q 037414 279 AAYGYHGQG--KKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRA- 355 (577)
Q Consensus 279 ~~~~~~g~~--~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~- 355 (577)
..+.+.|+. ++++.+++++.+.. +-|..++....-++...|+++++.+.++.+++. + ..+...|+...-.+.+.
T Consensus 114 ~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~-d-~~N~sAW~~R~~vl~~~~ 190 (320)
T PLN02789 114 WLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE-D-VRNNSAWNQRYFVITRSP 190 (320)
T ss_pred HHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-C-CCchhHHHHHHHHHHhcc
Confidence 555555653 66788888887653 235667777777777778888888888888754 2 23345555544444433
Q ss_pred --CCH----HHHHHHHHhC-CCCC-CHhHHHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccC-
Q 037414 356 --GRL----DEALKLIESM-SVEK-DEGLWGALLGACRIH----KNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAG- 422 (577)
Q Consensus 356 --g~~----~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g- 422 (577)
|.. +++.+...++ ...| |...|+-+...+... +...+|...+.++.+.+|+++.+...|+..|....
T Consensus 191 ~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~ 270 (320)
T PLN02789 191 LLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQ 270 (320)
T ss_pred ccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhc
Confidence 222 4556665343 4456 566888888888773 34567888999988888999999999999998643
Q ss_pred -----------------ChhHHHHHHHHHh
Q 037414 423 -----------------RWQDVAKIRDLMT 435 (577)
Q Consensus 423 -----------------~~~~A~~~~~~m~ 435 (577)
..++|.++++.+.
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 271 PTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred cchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 2356777777773
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.001 Score=65.69 Aligned_cols=116 Identities=19% Similarity=0.183 Sum_probs=70.2
Q ss_pred hccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCCHHHHH
Q 037414 317 SHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEKD-EGLWGALLGACRIHKNVDLAE 394 (577)
Q Consensus 317 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~ 394 (577)
...|+.++|+..++.+++. .+-|........+.+.+.++.++|.+.++++ ...|+ ...+-.+..++.+.|+..+|+
T Consensus 317 ~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai 394 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAI 394 (484)
T ss_pred HHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHH
Confidence 3456666666666666542 2233444455556666666666666666666 44554 335555566666666666666
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHH
Q 037414 395 MAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLM 434 (577)
Q Consensus 395 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 434 (577)
.+++.....+|+++..|..|..+|...|+..++.....++
T Consensus 395 ~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 395 RILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 6666666666666666666666666665555555544443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=5.7e-05 Score=64.69 Aligned_cols=121 Identities=13% Similarity=0.070 Sum_probs=94.6
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhC-C
Q 037414 292 DLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP-DVKHYTCMVDLLGRAGRLDEALKLIESM-S 369 (577)
Q Consensus 292 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~ 369 (577)
.+|++..+ +.|+. +..+..++...|++++|...|+..+. +.| +...|..+..++.+.|++++|...|++. .
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 45555554 34443 44566777888999999999998874 344 5778888888999999999999999888 4
Q ss_pred CCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHh
Q 037414 370 VEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYA 419 (577)
Q Consensus 370 ~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 419 (577)
..| +...|..+..++...|+.++|+..++++++..|+++..+.....+..
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 455 56688888889999999999999999999999999888876665543
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00015 Score=65.81 Aligned_cols=156 Identities=10% Similarity=0.115 Sum_probs=120.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHH
Q 037414 245 AVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEE 324 (577)
Q Consensus 245 ~Li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 324 (577)
.-+-.|...|+++......+.+..+. . .|...++.+++...+++..+.. +.|...+..+...|...|++++
T Consensus 21 ~~~~~Y~~~g~~~~v~~~~~~~~~~~-~-------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~ 91 (198)
T PRK10370 21 LCVGSYLLSPKWQAVRAEYQRLADPL-H-------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDN 91 (198)
T ss_pred HHHHHHHHcchHHHHHHHHHHHhCcc-c-------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 34667999999998876665443321 0 1223567788888888877753 5577789999999999999999
Q ss_pred HHHHHHHhhHhcCCCC-CHHHHHHHHHH-HHHcCC--HHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHH
Q 037414 325 GLRLFSSMWDDFAVRP-DVKHYTCMVDL-LGRAGR--LDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAK 398 (577)
Q Consensus 325 a~~~~~~m~~~~~~~p-~~~~~~~li~~-~~~~g~--~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~ 398 (577)
|...|+...+ +.| +...+..+..+ |.+.|+ .++|.+++++. ...| +...+..+...+...|++++|+..++
T Consensus 92 A~~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 92 ALLAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999974 445 57777888876 467787 59999999998 4556 55688888889999999999999999
Q ss_pred HHHhcCCCCchhHH
Q 037414 399 SLLERQPQNPGHYV 412 (577)
Q Consensus 399 ~~~~~~p~~~~~~~ 412 (577)
++++..|++..-+.
T Consensus 169 ~aL~l~~~~~~r~~ 182 (198)
T PRK10370 169 KVLDLNSPRVNRTQ 182 (198)
T ss_pred HHHhhCCCCccHHH
Confidence 99999988765443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.23 E-value=6.2e-05 Score=77.34 Aligned_cols=234 Identities=11% Similarity=0.069 Sum_probs=139.2
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHH
Q 037414 89 LTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRAC 168 (577)
Q Consensus 89 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 168 (577)
+|--..--.+...+.+.|-...|..+|++. ..|.-.|-.|+..|+..+|..+..+-.+ -+||...|..+.+..
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVL 467 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhc
Confidence 333344455666777777777777777664 3566677777777777777777666665 356777777776666
Q ss_pred hcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHH
Q 037414 169 RDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVID 248 (577)
Q Consensus 169 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~ 248 (577)
....-++.|.++.+..-.. .-..+.....+.++++++.+.|+.-.+-++. -..+|-.+..
T Consensus 468 ~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl-------------q~~~wf~~G~ 527 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPL-------------QLGTWFGLGC 527 (777)
T ss_pred cChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCcc-------------chhHHHhccH
Confidence 5555556666555543221 1111222223356777777777665443221 3445666666
Q ss_pred HHHhcCCHHHHHHHHHhccC--CC-hhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHH
Q 037414 249 MYAKCGSIDSAREIFDRMRQ--KN-VISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEG 325 (577)
Q Consensus 249 ~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 325 (577)
++.++++++.|.+.|..-.. || ..+||.+-.+|.+.|+-.+|...+.+..+.+ .-+...+-..+....+.|.+++|
T Consensus 528 ~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda 606 (777)
T KOG1128|consen 528 AALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDA 606 (777)
T ss_pred HHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHH
Confidence 67777777777777776542 43 4567777777777777777777777777665 32333444444555667777777
Q ss_pred HHHHHHhhHhcCCCCCHHHHHHHHH
Q 037414 326 LRLFSSMWDDFAVRPDVKHYTCMVD 350 (577)
Q Consensus 326 ~~~~~~m~~~~~~~p~~~~~~~li~ 350 (577)
++.+.++........|..+-..++.
T Consensus 607 ~~A~~rll~~~~~~~d~~vl~~iv~ 631 (777)
T KOG1128|consen 607 IKAYHRLLDLRKKYKDDEVLLIIVR 631 (777)
T ss_pred HHHHHHHHHhhhhcccchhhHHHHH
Confidence 7777766543222334444444443
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.23 E-value=2e-06 Score=53.46 Aligned_cols=35 Identities=23% Similarity=0.565 Sum_probs=32.1
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCc
Q 037414 124 VSWSVMVGGFSKVADFINCFETFREFIRCGMQLDS 158 (577)
Q Consensus 124 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 158 (577)
++||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999984
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.009 Score=60.52 Aligned_cols=329 Identities=12% Similarity=0.098 Sum_probs=193.7
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHhcCCCCCcchHHH--HHHHHH--hCCChhHHHHHHHH
Q 037414 73 IFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSV--MVGGFS--KVADFINCFETFRE 148 (577)
Q Consensus 73 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~--li~~~~--~~g~~~~A~~~~~~ 148 (577)
+++|.+....++..+ +.+...+..=+-+....+++++|+++.+.-... .+++. +=.+|| +.+..++|+..++
T Consensus 28 ~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~Dealk~~~- 103 (652)
T KOG2376|consen 28 YEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKLDEALKTLK- 103 (652)
T ss_pred HHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccHHHHHHHHh-
Confidence 888999999988876 666666666677778889999999777654321 12222 234444 5788999999887
Q ss_pred HHHCCCCCCcc-hHHHHHHHHhcCCChHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhH
Q 037414 149 FIRCGMQLDSY-TLPFVIRACRDRKDIVMGRLIHDIVLKSGLDI-DQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVT 226 (577)
Q Consensus 149 m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 226 (577)
|..++.. +...-...|-+.++++++..+|+.+.+.+.+. |...-..++.+-. .-.+. +.+..+.....+
T Consensus 104 ----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a----~l~~~-~~q~v~~v~e~s 174 (652)
T KOG2376|consen 104 ----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA----ALQVQ-LLQSVPEVPEDS 174 (652)
T ss_pred ----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH----hhhHH-HHHhccCCCcch
Confidence 4444433 55555566889999999999999998876432 2222222222211 11111 333333322112
Q ss_pred HHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhcc--------CCC-----hhh-----HHHHHHHHHHcCChH
Q 037414 227 WTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMR--------QKN-----VIS-----WSAMIAAYGYHGQGK 288 (577)
Q Consensus 227 ~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~--------~~~-----~~~-----~~~li~~~~~~g~~~ 288 (577)
-..+-...-.+...|++.+|+++++... +.| ... ---|.-.+...|+..
T Consensus 175 -------------yel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ 241 (652)
T KOG2376|consen 175 -------------YELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTA 241 (652)
T ss_pred -------------HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence 2223334556778999999999999872 111 111 223455677899999
Q ss_pred HHHHHHHHhhhCCCCCCHH----HHHHHHHHHhccCCHHH--HHHHHHHhhHhc----------CCCCCHHHHHHHHHHH
Q 037414 289 KALDLFPMMLSSRVLPNRI----TFVSLLYACSHTGLVEE--GLRLFSSMWDDF----------AVRPDVKHYTCMVDLL 352 (577)
Q Consensus 289 ~A~~l~~~m~~~g~~p~~~----t~~~ll~a~~~~g~~~~--a~~~~~~m~~~~----------~~~p~~~~~~~li~~~ 352 (577)
+|..++...+... .+|.. .-|.|+ +...-.++-. +...++...... .-.....--++++.+|
T Consensus 242 ea~~iy~~~i~~~-~~D~~~~Av~~NNLv-a~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~ 319 (652)
T KOG2376|consen 242 EASSIYVDIIKRN-PADEPSLAVAVNNLV-ALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF 319 (652)
T ss_pred HHHHHHHHHHHhc-CCCchHHHHHhcchh-hhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998874 44442 222233 2222222111 111222111000 0001112223444444
Q ss_pred HHcCCHHHHHHHHHhCC-CCCCHhHHHHHHHHHH-h-cCCHHHHHHHHHHHHhcCCCC-chhHHHHHHHHhccCChhHHH
Q 037414 353 GRAGRLDEALKLIESMS-VEKDEGLWGALLGACR-I-HKNVDLAEMAAKSLLERQPQN-PGHYVLLSNVYANAGRWQDVA 428 (577)
Q Consensus 353 ~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~~-~-~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~ 428 (577)
.+..+.+.++-...+ ..|.. .+..++..+. . ......+.+++....+..|.+ ......++.....+|+++.|.
T Consensus 320 --tnk~~q~r~~~a~lp~~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~ 396 (652)
T KOG2376|consen 320 --TNKMDQVRELSASLPGMSPES-LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVAL 396 (652)
T ss_pred --hhhHHHHHHHHHhCCccCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHH
Confidence 455677777777774 33433 4445554432 2 224777888888888888887 445566777788999999999
Q ss_pred HHHH
Q 037414 429 KIRD 432 (577)
Q Consensus 429 ~~~~ 432 (577)
+++.
T Consensus 397 ~il~ 400 (652)
T KOG2376|consen 397 EILS 400 (652)
T ss_pred HHHH
Confidence 9998
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.21 E-value=6.8e-05 Score=75.10 Aligned_cols=86 Identities=10% Similarity=0.025 Sum_probs=71.4
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHH
Q 037414 132 GFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDD 211 (577)
Q Consensus 132 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 211 (577)
-+.++|+..+|.-.|+..++... -+...|..|-...+..++-..|...+.+.++.. +.+..+.-+|.-.|...|.-.+
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP-~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDP-QHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhCh-HHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence 46788999999999998887632 267788888888888888889999999998875 5578888899999999999999
Q ss_pred HHHHHhhC
Q 037414 212 ARQLFDQM 219 (577)
Q Consensus 212 A~~~~~~m 219 (577)
|.+.++.-
T Consensus 372 Al~~L~~W 379 (579)
T KOG1125|consen 372 ALKMLDKW 379 (579)
T ss_pred HHHHHHHH
Confidence 99988764
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=5e-05 Score=64.19 Aligned_cols=95 Identities=14% Similarity=0.077 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHh
Q 037414 342 VKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYA 419 (577)
Q Consensus 342 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 419 (577)
....-.+...+...|++++|.++|+-+ .+.| +...|-.|...|...|++++|+..+..+..++|++|.++..+..+|.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 344445556677899999999999988 4456 55688889999999999999999999999999999999999999999
Q ss_pred ccCChhHHHHHHHHHhh
Q 037414 420 NAGRWQDVAKIRDLMTR 436 (577)
Q Consensus 420 ~~g~~~~A~~~~~~m~~ 436 (577)
..|+.+.|.+.|+....
T Consensus 115 ~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 115 ACDNVCYAIKALKAVVR 131 (157)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999999988764
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.16 E-value=3.2e-06 Score=52.52 Aligned_cols=34 Identities=26% Similarity=0.534 Sum_probs=31.0
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCC
Q 037414 272 ISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPN 305 (577)
Q Consensus 272 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 305 (577)
++||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 4799999999999999999999999999999987
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00031 Score=69.33 Aligned_cols=144 Identities=17% Similarity=0.166 Sum_probs=114.4
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHH-HHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC-HHHHHHHHH
Q 037414 273 SWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITF-VSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD-VKHYTCMVD 350 (577)
Q Consensus 273 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~ 350 (577)
.+....-.+...|++++|+..++.+... .||...| ......+...++.++|.+.++.++ ...|+ ....-.+.+
T Consensus 308 a~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal---~l~P~~~~l~~~~a~ 382 (484)
T COG4783 308 AQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKAL---ALDPNSPLLQLNLAQ 382 (484)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH---hcCCCccHHHHHHHH
Confidence 3334444556789999999999998875 5555544 455678899999999999999997 45676 555667788
Q ss_pred HHHHcCCHHHHHHHHHhC--CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHH
Q 037414 351 LLGRAGRLDEALKLIESM--SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVA 428 (577)
Q Consensus 351 ~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 428 (577)
+|.+.|++.+|.+++++. ...-|+..|..|..+|...|+..++.... ...|...|+|++|.
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~~G~~~~A~ 445 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYALAGRLEQAI 445 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHhCCCHHHHH
Confidence 999999999999999987 33347779999999999999988876553 45677899999999
Q ss_pred HHHHHHhhCC
Q 037414 429 KIRDLMTRRR 438 (577)
Q Consensus 429 ~~~~~m~~~g 438 (577)
..+....++.
T Consensus 446 ~~l~~A~~~~ 455 (484)
T COG4783 446 IFLMRASQQV 455 (484)
T ss_pred HHHHHHHHhc
Confidence 9998887654
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.0004 Score=63.16 Aligned_cols=154 Identities=13% Similarity=0.118 Sum_probs=88.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHH
Q 037414 275 SAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGR 354 (577)
Q Consensus 275 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 354 (577)
...-..+...|+-+....+..+.... ..-|......+.....+.|++.+|...+.+... .-++|...|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 33445555566666555555553322 122333333455566666666666666666642 344556666666666666
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHH
Q 037414 355 AGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIR 431 (577)
Q Consensus 355 ~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 431 (577)
.|++++|..-|.+. .+.| +....+.|...+.-.|+.+.|..++.......+.++..-..|.......|++++|.++.
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 66666666655554 3333 33455566666666666666666666666666656666666666666666666666554
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.002 Score=60.89 Aligned_cols=176 Identities=9% Similarity=0.029 Sum_probs=95.3
Q ss_pred HHHHHcCCChHHHHHHHhcCCCC---CcchHHH-HHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCCh
Q 037414 99 LYIYALHKALTDAHALFNGMKER---DSVSWSV-MVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDI 174 (577)
Q Consensus 99 i~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 174 (577)
+.-+....++..|+.+++--..- ...+-+. +...+.+.|++++|+..+....+. -.|+...+..|.-...-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHHH
Confidence 44455667888888887644321 1112222 334667789999999998887775 345555565555555556777
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcC
Q 037414 175 VMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCG 254 (577)
Q Consensus 175 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g 254 (577)
.+|+++-... +.++-....|...--+.|+-++-..+-+.+.. ...---+|..+....-
T Consensus 108 ~eA~~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD-----------------~~EdqLSLAsvhYmR~ 165 (557)
T KOG3785|consen 108 IEAKSIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQD-----------------TLEDQLSLASVHYMRM 165 (557)
T ss_pred HHHHHHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-----------------hHHHHHhHHHHHHHHH
Confidence 7777765432 33333444555666677777666655544432 1111223444444445
Q ss_pred CHHHHHHHHHhccC--CChhhHHH-HHHHHHHcCChHHHHHHHHHh
Q 037414 255 SIDSAREIFDRMRQ--KNVISWSA-MIAAYGYHGQGKKALDLFPMM 297 (577)
Q Consensus 255 ~~~~A~~~~~~~~~--~~~~~~~~-li~~~~~~g~~~~A~~l~~~m 297 (577)
.+++|.+++.++.. |+....|. |.-+|.+..-++-+.+++.--
T Consensus 166 HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vY 211 (557)
T KOG3785|consen 166 HYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVY 211 (557)
T ss_pred HHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHH
Confidence 56667777766654 32233332 222334444444444444433
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00014 Score=72.33 Aligned_cols=127 Identities=14% Similarity=0.170 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCC
Q 037414 93 IVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRK 172 (577)
Q Consensus 93 ~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 172 (577)
....+|+..+...++++.|..+|+++.+.++..+-.++..+...++..+|++++++..+.. +-|...+......+.+.+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 3455666777778999999999999999888888889999999999999999999998752 225555666666788999
Q ss_pred ChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCC
Q 037414 173 DIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPT 221 (577)
Q Consensus 173 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 221 (577)
+.+.|..+.+++++.. |.+..+|..|..+|.+.|+++.|+..++.++-
T Consensus 249 ~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 249 KYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred CHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 9999999999999874 55677999999999999999999999999873
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.07 E-value=6.5e-06 Score=50.77 Aligned_cols=34 Identities=15% Similarity=0.263 Sum_probs=29.1
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 037414 123 SVSWSVMVGGFSKVADFINCFETFREFIRCGMQL 156 (577)
Q Consensus 123 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 156 (577)
+.+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3578888888888888888888888888888877
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0011 Score=70.60 Aligned_cols=132 Identities=11% Similarity=0.034 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHhcCCCC---CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-Ccch--HHHHH
Q 037414 92 LIVANKLLYIYALHKALTDAHALFNGMKER---DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQL-DSYT--LPFVI 165 (577)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t--~~~ll 165 (577)
...|..|-..|....+...|.+.|+...+- |..++......|++..+++.|..+.-..-+. .| -... |..+-
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qk--a~a~~~k~nW~~rG 569 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQK--APAFACKENWVQRG 569 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhh--chHHHHHhhhhhcc
Confidence 357888888888888888999999887653 6778999999999999999998883222221 11 1112 22222
Q ss_pred HHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhH
Q 037414 166 RACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVT 226 (577)
Q Consensus 166 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 226 (577)
-.+.+.++...+..-++...+.. |.|...|..|..+|..+|++..|.++|++...-++.+
T Consensus 570 ~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s 629 (1238)
T KOG1127|consen 570 PYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLS 629 (1238)
T ss_pred ccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHh
Confidence 23667788888888888877765 6688999999999999999999999998876655444
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00043 Score=62.96 Aligned_cols=134 Identities=19% Similarity=0.125 Sum_probs=111.2
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHhHHHHH
Q 037414 303 LPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM--SVEKDEGLWGAL 380 (577)
Q Consensus 303 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~l 380 (577)
.|+......+-.++...|+-+....+...... .-..+......++....+.|++.+|...|++. .-.+|...|+.+
T Consensus 63 ~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l 140 (257)
T COG5010 63 NPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL 140 (257)
T ss_pred CcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence 44433225566777788888888888777642 33445566667899999999999999999998 434578899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCC
Q 037414 381 LGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 381 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
..+|-+.|+.+.|...+.+++++.|.++..++.|...|.-.|+++.|..++..-...+
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999998876544
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.012 Score=55.58 Aligned_cols=302 Identities=10% Similarity=0.011 Sum_probs=191.0
Q ss_pred CCHHHHHHH---HHHHHcCCChHHHHHHHhcCCCCCcchHHHHH---HHHHhCCChhHHHHHHHHHHHCCCCCC------
Q 037414 90 TNLIVANKL---LYIYALHKALTDAHALFNGMKERDSVSWSVMV---GGFSKVADFINCFETFREFIRCGMQLD------ 157 (577)
Q Consensus 90 ~~~~~~~~l---i~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~------ 157 (577)
.|+..|-++ ...|...|+-..|+.-|++..+--+.-+.+-| ..+.+.|.+++|..=|+..+.....-+
T Consensus 67 ~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaq 146 (504)
T KOG0624|consen 67 GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQ 146 (504)
T ss_pred CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHH
Confidence 344444444 34566677777777777666543222333333 357789999999999999887532111
Q ss_pred ------cc--hHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHH
Q 037414 158 ------SY--TLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTV 229 (577)
Q Consensus 158 ------~~--t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 229 (577)
.. .....+..+...|+...|......+++.. +.|...+..-..+|...|++..|..=+....+-.
T Consensus 147 skl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs------ 219 (504)
T KOG0624|consen 147 SKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS------ 219 (504)
T ss_pred HHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc------
Confidence 11 12233445667899999999999998875 6799999999999999999999987665543311
Q ss_pred HHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHH
Q 037414 230 MIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITF 309 (577)
Q Consensus 230 ~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 309 (577)
..++...--+-..+...|+.+.++...++..+-|+..-. +|..-....+..+.++.|.+
T Consensus 220 -------~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~----Cf~~YKklkKv~K~les~e~---------- 278 (504)
T KOG0624|consen 220 -------QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKL----CFPFYKKLKKVVKSLESAEQ---------- 278 (504)
T ss_pred -------ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhh----HHHHHHHHHHHHHHHHHHHH----------
Confidence 124555666778888999999999998887763332211 11111122333333333332
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HhHHHHHHH
Q 037414 310 VSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD-----VKHYTCMVDLLGRAGRLDEALKLIESM-SVEKD-EGLWGALLG 382 (577)
Q Consensus 310 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~ 382 (577)
....+.+.++.+-.+...+. .|. ...+..+-..|...|++.+|++.-.+. .+.|| +.++.-=..
T Consensus 279 ------~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAe 349 (504)
T KOG0624|consen 279 ------AIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAE 349 (504)
T ss_pred ------HHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 12334444555555555432 333 233445566777888888888877766 56665 557777778
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCC
Q 037414 383 ACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 383 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
+|.....++.|+.-|+.+.+.++++..+-.- .+.|.++.+...+++
T Consensus 350 A~l~dE~YD~AI~dye~A~e~n~sn~~~reG----------le~Akrlkkqs~kRD 395 (504)
T KOG0624|consen 350 AYLGDEMYDDAIHDYEKALELNESNTRAREG----------LERAKRLKKQSGKRD 395 (504)
T ss_pred HHhhhHHHHHHHHHHHHHHhcCcccHHHHHH----------HHHHHHHHHHhccch
Confidence 8888888999999999999998887643222 345555555544443
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.019 Score=57.66 Aligned_cols=375 Identities=13% Similarity=0.157 Sum_probs=215.3
Q ss_pred CCCChhhHHHHHHhccC--hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHhcCCCC--CcchHHHHHH
Q 037414 56 RSVDPKFFISSLLSCRN--IFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKER--DSVSWSVMVG 131 (577)
Q Consensus 56 ~~p~~~~~~~ll~a~~~--~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~--~~~~~~~li~ 131 (577)
++.|..+|..+++-... .++++..++++... ++.++..|..-|..-.+..+++...++|.+.... +...|..-|+
T Consensus 16 nP~di~sw~~lire~qt~~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~ 94 (656)
T KOG1914|consen 16 NPYDIDSWSQLIREAQTQPIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLS 94 (656)
T ss_pred CCccHHHHHHHHHHHccCCHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHH
Confidence 45688899999987776 89999999999864 4667888999999999999999999999987654 7778888886
Q ss_pred HHHh-CCChh----HHHHHHHHHH-HCCCCCCcc-hHHHHHHH---------HhcCCChHHHHHHHHHHHHcCCCCcHHH
Q 037414 132 GFSK-VADFI----NCFETFREFI-RCGMQLDSY-TLPFVIRA---------CRDRKDIVMGRLIHDIVLKSGLDIDQFV 195 (577)
Q Consensus 132 ~~~~-~g~~~----~A~~~~~~m~-~~g~~p~~~-t~~~ll~~---------~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 195 (577)
.--+ +|... ...+.|+-.. +.|+.+-.. .|+.-+.. +....+++..++++++++..-+..=...
T Consensus 95 YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkL 174 (656)
T KOG1914|consen 95 YVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKL 174 (656)
T ss_pred HHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHH
Confidence 4333 23322 2233344333 445544332 23433332 2334456677888888875432222333
Q ss_pred HHHHHH------H-------HHhCCCHHHHHHHHhhCCC------CCh---------------hHHHHHHhc--------
Q 037414 196 CAALVD------M-------YAKCKVIDDARQLFDQMPT------RDL---------------VTWTVMIGA-------- 233 (577)
Q Consensus 196 ~~~li~------~-------~~~~g~~~~A~~~~~~m~~------~~~---------------~~~~~~i~~-------- 233 (577)
|+-... . --+...+-.|+++++++.. ++. ..|--+|.=
T Consensus 175 W~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t 254 (656)
T KOG1914|consen 175 WKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRT 254 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCccc
Confidence 322211 0 0112335556666665421 111 114222221
Q ss_pred --------------------CCCCcchhhHH-----HHHHHHHhcCC-------HHHHHHHHHhcc--------------
Q 037414 234 --------------------NKFLLDVILGT-----AVIDMYAKCGS-------IDSAREIFDRMR-------------- 267 (577)
Q Consensus 234 --------------------~g~~~~~~~~~-----~Li~~~~~~g~-------~~~A~~~~~~~~-------------- 267 (577)
.+..|++.... ..-+.+...|+ -+++..+++...
T Consensus 255 ~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~ 334 (656)
T KOG1914|consen 255 LDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFAL 334 (656)
T ss_pred ccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111000 00011111222 122223332221
Q ss_pred ------------------------C----CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCC-CHHHHHHHHHHHhc
Q 037414 268 ------------------------Q----KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLP-NRITFVSLLYACSH 318 (577)
Q Consensus 268 ------------------------~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~ 318 (577)
. .-..+|...+..-.+..-...|..+|.+..+.+..+ +...+++++.-+|
T Consensus 335 a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c- 413 (656)
T KOG1914|consen 335 ADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC- 413 (656)
T ss_pred HhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-
Confidence 1 112345556666666666777888888888777777 5666677777665
Q ss_pred cCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC---CCCCC--HhHHHHHHHHHHhcCCHHHH
Q 037414 319 TGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM---SVEKD--EGLWGALLGACRIHKNVDLA 393 (577)
Q Consensus 319 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~--~~~~~~ll~~~~~~g~~~~a 393 (577)
.++.+-|.++|+.=++++|- +..--...++-+...++-..|..+|++. .+.|| ..+|..+|..-..-|+...+
T Consensus 414 skD~~~AfrIFeLGLkkf~d--~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si 491 (656)
T KOG1914|consen 414 SKDKETAFRIFELGLKKFGD--SPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSI 491 (656)
T ss_pred cCChhHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHH
Confidence 46777888888877665443 3334456677777778878888888777 22333 34888888888888888888
Q ss_pred HHHHHHHHhcCCCC----chhHHHHHHHHhccCChhHHHHHHHHH
Q 037414 394 EMAAKSLLERQPQN----PGHYVLLSNVYANAGRWQDVAKIRDLM 434 (577)
Q Consensus 394 ~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m 434 (577)
..+-++.....|.+ ...-..+++-|.-.+.+..-..-++.|
T Consensus 492 ~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 492 LKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred HHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 88877776655521 123345566666666555444444433
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.002 Score=62.93 Aligned_cols=31 Identities=19% Similarity=0.213 Sum_probs=16.3
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHhhhC
Q 037414 270 NVISWSAMIAAYGYHGQGKKALDLFPMMLSS 300 (577)
Q Consensus 270 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 300 (577)
|..+|+-....+...|+++++++.++++++.
T Consensus 141 Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~ 171 (320)
T PLN02789 141 NYHAWSHRQWVLRTLGGWEDELEYCHQLLEE 171 (320)
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555554
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0017 Score=69.24 Aligned_cols=126 Identities=14% Similarity=0.100 Sum_probs=79.9
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCCHhHHH
Q 037414 307 ITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD-VKHYTCMVDLLGRAGRLDEALKLIESM-------SVEKDEGLWG 378 (577)
Q Consensus 307 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~~~ 378 (577)
.+|..+--.|....+++.|...|.... .+.|+ ...|-...-.....|+.-++..+|..- +-.|+...|-
T Consensus 851 ~~W~NlgvL~l~n~d~E~A~~af~~~q---SLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~ 927 (1238)
T KOG1127|consen 851 CQWLNLGVLVLENQDFEHAEPAFSSVQ---SLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWL 927 (1238)
T ss_pred hheeccceeEEecccHHHhhHHHHhhh---hcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHH
Confidence 344444444555667888888888774 45554 444444444444567777777777652 3345666665
Q ss_pred HHHHHHHhcCCHHHHHH----------HHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHh
Q 037414 379 ALLGACRIHKNVDLAEM----------AAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMT 435 (577)
Q Consensus 379 ~ll~~~~~~g~~~~a~~----------~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 435 (577)
....-...+|+.++-+. ..++.....|+...+|........+.+.+++|.....+..
T Consensus 928 c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 928 CATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred HHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 55555566666555444 3444455678888899999888888888888887766543
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00011 Score=62.34 Aligned_cols=101 Identities=22% Similarity=0.309 Sum_probs=76.2
Q ss_pred CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 037414 338 VRPD-VKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLL 414 (577)
Q Consensus 338 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 414 (577)
..|+ ......+...+...|++++|.+.++.. ...| +...|..+...+...|+++.|...++++.+.+|+++..+..+
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 91 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHA 91 (135)
T ss_pred CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 3443 344556667777888888888888776 3344 556777777778888888888888888888888888888888
Q ss_pred HHHHhccCChhHHHHHHHHHhhCC
Q 037414 415 SNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 415 ~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
..+|...|++++|.+.++...+..
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhc
Confidence 888888888888888887776543
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.01 E-value=9.3e-06 Score=50.05 Aligned_cols=33 Identities=30% Similarity=0.438 Sum_probs=26.9
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCC
Q 037414 272 ISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLP 304 (577)
Q Consensus 272 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 304 (577)
.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888776
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00022 Score=71.02 Aligned_cols=129 Identities=12% Similarity=0.126 Sum_probs=105.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcc
Q 037414 240 VILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHT 319 (577)
Q Consensus 240 ~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 319 (577)
-.....|+..+...++++.|..+|+++.+.++..+..++..+...++..+|++++.+.... .+-|......-...|.+.
T Consensus 169 NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 169 NYLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSK 247 (395)
T ss_pred hHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhc
Confidence 3444567777778899999999999998877777777888888899999999999998865 233555666666778899
Q ss_pred CCHHHHHHHHHHhhHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhCCCCC
Q 037414 320 GLVEEGLRLFSSMWDDFAVRPD-VKHYTCMVDLLGRAGRLDEALKLIESMSVEK 372 (577)
Q Consensus 320 g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p 372 (577)
++.+.|.++.+++.+ ..|+ ..+|..|...|.+.|++++|+-.++.+|..|
T Consensus 248 ~~~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 248 KKYELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred CCHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 999999999999973 4565 5699999999999999999999999987554
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00068 Score=70.62 Aligned_cols=242 Identities=13% Similarity=0.099 Sum_probs=165.5
Q ss_pred CCCcchHHHHHH--HHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHc--------CC
Q 037414 120 ERDSVSWSVMVG--GFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKS--------GL 189 (577)
Q Consensus 120 ~~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--------g~ 189 (577)
.-|..+-.+++. -|..-|+.+.|.+-.+..+. ...|..+.+.|.+..+++-|+-.+..|... ..
T Consensus 723 ~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~IkS------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~ 796 (1416)
T KOG3617|consen 723 NCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQ 796 (1416)
T ss_pred ccCHHHHHhhhceeEEEEeccHHHHHHHHHHHhh------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHH
Confidence 347777777774 57788999999888877654 367999999999999998887777665532 11
Q ss_pred CCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC-
Q 037414 190 DIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ- 268 (577)
Q Consensus 190 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~- 268 (577)
+.+...-....-.....|.+++|..+|++.+.-| .|=..|-..|.+++|.++-+.--+
T Consensus 797 q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------------------LlNKlyQs~g~w~eA~eiAE~~DRi 855 (1416)
T KOG3617|consen 797 QNGEEDEAKVAVLAIELGMLEEALILYRQCKRYD---------------------LLNKLYQSQGMWSEAFEIAETKDRI 855 (1416)
T ss_pred hCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------------------HHHHHHHhcccHHHHHHHHhhccce
Confidence 1111233333444567899999999999887643 345667889999999988765432
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCC-------------------CCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 037414 269 KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR-------------------VLPNRITFVSLLYACSHTGLVEEGLRLF 329 (577)
Q Consensus 269 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-------------------~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 329 (577)
.=-.||..-...+-..++.+.|++.|++..... -.-|...|.--...+...|+++.|..++
T Consensus 856 HLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y 935 (1416)
T KOG3617|consen 856 HLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFY 935 (1416)
T ss_pred ehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHH
Confidence 111245555555566777778877776542210 0122333333344455667778887777
Q ss_pred HHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037414 330 SSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLL 401 (577)
Q Consensus 330 ~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 401 (577)
.... -|-+++...+-.|+.++|-++-++-+ |....-.|.+-|...|++.+|..+|.++.
T Consensus 936 ~~A~----------D~fs~VrI~C~qGk~~kAa~iA~esg---d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 936 SSAK----------DYFSMVRIKCIQGKTDKAARIAEESG---DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HHhh----------hhhhheeeEeeccCchHHHHHHHhcc---cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 7663 25577777788899999999888865 66666678888999999999998888764
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.015 Score=58.27 Aligned_cols=370 Identities=11% Similarity=0.029 Sum_probs=208.5
Q ss_pred hhccCCCCCCCCCcccCccCCCCCCCCCCCChhhHHHHHHhccChHHHHHHHHHHHH-cCCCCC-HHHHHHHHHHHHcCC
Q 037414 29 ALEPHGHEQNPMNPRVPMQMGPDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVA-GGTLTN-LIVANKLLYIYALHK 106 (577)
Q Consensus 29 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~a~~~~~~a~~~~~~~~~-~g~~~~-~~~~~~li~~~~~~g 106 (577)
+....|+++.|+..|....... +++...|+.=..+.+........+....+ ..+.|+ +--|+-+-.++.-.|
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~------p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg 84 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLS------PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLG 84 (539)
T ss_pred hhcccccHHHHHHHHHHHHccC------CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcc
Confidence 4567899999999999887651 23444454444444443333333333322 234454 557888888888899
Q ss_pred ChHHHHHHHhcCCCC---CcchHHHHHHHHHhCCChhHHH---HHHHHHHHC---CCCCCcchHHHHHHHHhcC------
Q 037414 107 ALTDAHALFNGMKER---DSVSWSVMVGGFSKVADFINCF---ETFREFIRC---GMQLDSYTLPFVIRACRDR------ 171 (577)
Q Consensus 107 ~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~---~~~~~m~~~---g~~p~~~t~~~ll~~~~~~------ 171 (577)
++++|+.-|.+-.+. |...++.+..++.......+.. .++...... ........|..++...-+.
T Consensus 85 ~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~ 164 (539)
T KOG0548|consen 85 DYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKL 164 (539)
T ss_pred cHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhc
Confidence 999999999987653 5556777777762211000000 000000000 0000111233332222110
Q ss_pred -CChHHHHHHHHHHHHc--------C-------CCC------------c----------HHHHHHHHHHHHhCCCHHHHH
Q 037414 172 -KDIVMGRLIHDIVLKS--------G-------LDI------------D----------QFVCAALVDMYAKCKVIDDAR 213 (577)
Q Consensus 172 -~~~~~a~~~~~~~~~~--------g-------~~~------------~----------~~~~~~li~~~~~~g~~~~A~ 213 (577)
.+.+...+.+..+... | ..| | ..-...|.++..+..+++.|.
T Consensus 165 ~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~ 244 (539)
T KOG0548|consen 165 YLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAI 244 (539)
T ss_pred ccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHH
Confidence 0111112222111110 0 011 0 011234455555566666666
Q ss_pred HHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccCCCh---h-------hHHHHHHHHHH
Q 037414 214 QLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNV---I-------SWSAMIAAYGY 283 (577)
Q Consensus 214 ~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~---~-------~~~~li~~~~~ 283 (577)
+-++...+-+ .+..-++....+|...|.+......-+...+..- . ....+..+|.+
T Consensus 245 q~y~~a~el~--------------~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k 310 (539)
T KOG0548|consen 245 QHYAKALELA--------------TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTK 310 (539)
T ss_pred HHHHHHHhHh--------------hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhh
Confidence 6665554422 1344455666667777766666555554433111 1 12223345666
Q ss_pred cCChHHHHHHHHHhhhCCCCCCHHHH-------------------------HHHHHHHhccCCHHHHHHHHHHhhHhcCC
Q 037414 284 HGQGKKALDLFPMMLSSRVLPNRITF-------------------------VSLLYACSHTGLVEEGLRLFSSMWDDFAV 338 (577)
Q Consensus 284 ~g~~~~A~~l~~~m~~~g~~p~~~t~-------------------------~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 338 (577)
.++++.|+..|.+....-..||..+= ..-...+.+.|++..|...+.++++. -
T Consensus 311 ~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr--~ 388 (539)
T KOG0548|consen 311 REDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR--D 388 (539)
T ss_pred HHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--C
Confidence 67777777777776554444443321 11134456779999999999999864 2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 037414 339 RPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEKDE-GLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSN 416 (577)
Q Consensus 339 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 416 (577)
+-|...|.-..-+|.+.|.+..|++-.+.. ...|+. ..|.-=..++....+++.|.+.|++.++.+|.+...-..+.+
T Consensus 389 P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~r 468 (539)
T KOG0548|consen 389 PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRR 468 (539)
T ss_pred CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 446788998999999999999998876655 445543 356555666777789999999999999999998776655555
Q ss_pred HHhc
Q 037414 417 VYAN 420 (577)
Q Consensus 417 ~~~~ 420 (577)
++..
T Consensus 469 c~~a 472 (539)
T KOG0548|consen 469 CVEA 472 (539)
T ss_pred HHHH
Confidence 5543
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0056 Score=55.90 Aligned_cols=84 Identities=17% Similarity=0.170 Sum_probs=37.0
Q ss_pred HHhcCCHHHHHHHHHhccCC-ChhhHHHHHHHHHH----cCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHH
Q 037414 250 YAKCGSIDSAREIFDRMRQK-NVISWSAMIAAYGY----HGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEE 324 (577)
Q Consensus 250 ~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 324 (577)
+.+..+.+-|.+.+++|.+- +..+.+.|..++.+ .+...+|.-+|++|-+. ..|+..+.+....++...|++++
T Consensus 147 ~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~ee 225 (299)
T KOG3081|consen 147 LLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEE 225 (299)
T ss_pred HHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHH
Confidence 33444444455555554442 22233333333322 22344455555554432 34444445444444555555555
Q ss_pred HHHHHHHhhH
Q 037414 325 GLRLFSSMWD 334 (577)
Q Consensus 325 a~~~~~~m~~ 334 (577)
|..+++..+.
T Consensus 226 Ae~lL~eaL~ 235 (299)
T KOG3081|consen 226 AESLLEEALD 235 (299)
T ss_pred HHHHHHHHHh
Confidence 5555554443
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0011 Score=71.53 Aligned_cols=140 Identities=11% Similarity=0.056 Sum_probs=114.6
Q ss_pred cchhhHHHHHHHHHhcCCHHHHHHHHHhccC--CC-hhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCC-HHHHHHHH
Q 037414 238 LDVILGTAVIDMYAKCGSIDSAREIFDRMRQ--KN-VISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPN-RITFVSLL 313 (577)
Q Consensus 238 ~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll 313 (577)
.++..+-.|.......|.+++|+.+++...+ || ...+..++..+.+.+++++|+..+++.... .|+ ......+.
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~a 161 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLEA 161 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHHH
Confidence 3677888999999999999999999999875 54 556778899999999999999999999885 455 44566777
Q ss_pred HHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHhHHHHHH
Q 037414 314 YACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM--SVEKDEGLWGALL 381 (577)
Q Consensus 314 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll 381 (577)
.++.+.|+.++|..+|+++... ..-+...+..+...+...|+.++|...|++. ...|....|+..+
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 7889999999999999999852 2234778888899999999999999999988 3345555555544
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0043 Score=56.59 Aligned_cols=114 Identities=11% Similarity=0.093 Sum_probs=63.7
Q ss_pred ccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHH----HcCCHHHHHHHHHhC--CCCCCHhHHHHHHHHHHhcCCHH
Q 037414 318 HTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLG----RAGRLDEALKLIESM--SVEKDEGLWGALLGACRIHKNVD 391 (577)
Q Consensus 318 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~----~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~ 391 (577)
+..+++-|.+.++.|.+ + .+..+.+-|..++. -.+.+.+|.-+|++| +..|+..+.+-...++...|+++
T Consensus 149 k~~r~d~A~~~lk~mq~---i-ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~e 224 (299)
T KOG3081|consen 149 KMHRFDLAEKELKKMQQ---I-DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYE 224 (299)
T ss_pred HHHHHHHHHHHHHHHHc---c-chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHH
Confidence 44455555555555531 1 12223333333322 234566666677666 24566666666666666677777
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHH-HHHHHHHh
Q 037414 392 LAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDV-AKIRDLMT 435 (577)
Q Consensus 392 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 435 (577)
+|+.+++.++..+++++.+...++-.-...|+..++ .+.+.+++
T Consensus 225 eAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 225 EAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 777777777777777666666666666666655443 33444444
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0027 Score=69.24 Aligned_cols=235 Identities=9% Similarity=0.067 Sum_probs=159.0
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHhcCCC--CC-cchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHH
Q 037414 89 LTNLIVANKLLYIYALHKALTDAHALFNGMKE--RD-SVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVI 165 (577)
Q Consensus 89 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 165 (577)
+.+...+..|+..|...+++++|.++.+...+ |+ ...|-.+...+.+.++..++..+ .++
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l 90 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-----------------NLI 90 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-----------------hhh
Confidence 34567888999999999999999999886544 33 22333333366666765555444 334
Q ss_pred HHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHH
Q 037414 166 RACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTA 245 (577)
Q Consensus 166 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~ 245 (577)
.......++..+..++..+.+. ..+...+..|..+|-+.|+.++|..+++++.+-|+ .|+.+.|.
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~-------------~n~~aLNn 155 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADR-------------DNPEIVKK 155 (906)
T ss_pred hhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCc-------------ccHHHHHH
Confidence 4444444555555555566654 34556888899999999999999999999987653 37888999
Q ss_pred HHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHH-HHHHHHHHHhccCCHHH
Q 037414 246 VIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRI-TFVSLLYACSHTGLVEE 324 (577)
Q Consensus 246 Li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~ 324 (577)
+...|+.. ++++|.+++.+... .|....++.++.++|.++... .|+.. .|..++.
T Consensus 156 ~AY~~ae~-dL~KA~~m~~KAV~-----------~~i~~kq~~~~~e~W~k~~~~--~~~d~d~f~~i~~---------- 211 (906)
T PRK14720 156 LATSYEEE-DKEKAITYLKKAIY-----------RFIKKKQYVGIEEIWSKLVHY--NSDDFDFFLRIER---------- 211 (906)
T ss_pred HHHHHHHh-hHHHHHHHHHHHHH-----------HHHhhhcchHHHHHHHHHHhc--CcccchHHHHHHH----------
Confidence 99999999 99999998877533 377778999999999999875 33333 2222222
Q ss_pred HHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHH
Q 037414 325 GLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACR 385 (577)
Q Consensus 325 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~ 385 (577)
.+....+..--+.++-.+..-|-..++++++..+++.+ ...| |.....-++..|.
T Consensus 212 ------ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 212 ------KVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred ------HHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 22222233333455556667777888888998888887 4444 4445555555554
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.81 E-value=2.6e-05 Score=46.80 Aligned_cols=31 Identities=26% Similarity=0.659 Sum_probs=24.9
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHHHHCCC
Q 037414 124 VSWSVMVGGFSKVADFINCFETFREFIRCGM 154 (577)
Q Consensus 124 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 154 (577)
++||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4688888888888888888888888887764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0025 Score=57.67 Aligned_cols=168 Identities=15% Similarity=0.139 Sum_probs=125.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHH---HHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhc
Q 037414 242 LGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAM---IAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSH 318 (577)
Q Consensus 242 ~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 318 (577)
+|..+.-+...+|+.+.|...++.+.++-+-++... ..-+-..|++++|+++++.+.+.. +-|.+++..-+...-.
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka 132 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKA 132 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHH
Confidence 555667777889999999999999875333333322 122445799999999999999875 5567777766666667
Q ss_pred cCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHH---HhcCCHHHH
Q 037414 319 TGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEKD-EGLWGALLGAC---RIHKNVDLA 393 (577)
Q Consensus 319 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~---~~~g~~~~a 393 (577)
.|.--+|++-+....+ .+..|.+.|.-+.+.|...|++++|.-.++++ -+.|. ...+..+...+ ....+.+.+
T Consensus 133 ~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred cCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 7877788888877776 46788999999999999999999999999998 44564 34444454442 334467889
Q ss_pred HHHHHHHHhcCCCCchhHH
Q 037414 394 EMAAKSLLERQPQNPGHYV 412 (577)
Q Consensus 394 ~~~~~~~~~~~p~~~~~~~ 412 (577)
.+.+.+.++..|.+...+.
T Consensus 211 rkyy~~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 211 RKYYERALKLNPKNLRALF 229 (289)
T ss_pred HHHHHHHHHhChHhHHHHH
Confidence 9999999999996654443
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00097 Score=56.42 Aligned_cols=113 Identities=14% Similarity=0.079 Sum_probs=84.5
Q ss_pred HHHHhhhCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CC
Q 037414 293 LFPMMLSSRVLPN-RITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SV 370 (577)
Q Consensus 293 l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~ 370 (577)
.|++.... .|+ ......+...+...|+.++|.+.++.+.+. .+.+...+..+...|.+.|++++|...+++. ..
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44555443 343 344556667778889999999999888643 2345677788888888899999999888877 33
Q ss_pred CC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 037414 371 EK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPG 409 (577)
Q Consensus 371 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 409 (577)
.| +...+..+...+...|+.+.|...++++++..|++..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 44 4567777788888999999999999999999988764
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.77 E-value=3e-05 Score=46.51 Aligned_cols=31 Identities=26% Similarity=0.510 Sum_probs=23.5
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHhhhCCC
Q 037414 272 ISWSAMIAAYGYHGQGKKALDLFPMMLSSRV 302 (577)
Q Consensus 272 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 302 (577)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4677788888888888888888888777663
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0004 Score=53.89 Aligned_cols=92 Identities=21% Similarity=0.244 Sum_probs=71.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccC
Q 037414 345 YTCMVDLLGRAGRLDEALKLIESM-SVEKD-EGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAG 422 (577)
Q Consensus 345 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 422 (577)
+..+...+...|++++|.+++++. ...|+ ...+..+...+...++++.|...++...+..|.++..+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445566677788888888888776 33443 3567777777888888888888888888888888778888888888888
Q ss_pred ChhHHHHHHHHHhh
Q 037414 423 RWQDVAKIRDLMTR 436 (577)
Q Consensus 423 ~~~~A~~~~~~m~~ 436 (577)
++++|...+....+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 88888888877654
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00094 Score=54.89 Aligned_cols=102 Identities=9% Similarity=0.093 Sum_probs=57.1
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HhHHHHHHH
Q 037414 309 FVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP-DVKHYTCMVDLLGRAGRLDEALKLIESM-SVEKD----EGLWGALLG 382 (577)
Q Consensus 309 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~ 382 (577)
+..+...+...|++++|.+.|..+.+.+.-.+ ....+..+...+.+.|++++|.+.++.+ ...|+ ..++..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 33444555556666666666666654321111 1234445566666666666666666655 22232 234555556
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCchh
Q 037414 383 ACRIHKNVDLAEMAAKSLLERQPQNPGH 410 (577)
Q Consensus 383 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 410 (577)
.+...|+.+.|...++++++..|+++..
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 6666677777777777777766665543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0017 Score=55.75 Aligned_cols=113 Identities=14% Similarity=0.096 Sum_probs=51.7
Q ss_pred cCCHHHHHHHHHHhhHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH----hHHHHHHHHHHhcCCHHH
Q 037414 319 TGLVEEGLRLFSSMWDDFAVRP-DVKHYTCMVDLLGRAGRLDEALKLIESM-SVEKDE----GLWGALLGACRIHKNVDL 392 (577)
Q Consensus 319 ~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~~~~~~g~~~~ 392 (577)
.++...+...++.+.++++-.| .....-.+...+...|++++|...|+.. ...||. .....|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4555555555555544321110 0112222334455555555555555554 111222 122333444555555665
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHH
Q 037414 393 AEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRD 432 (577)
Q Consensus 393 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 432 (577)
|+..++.. ...+..+..+..+.++|.+.|++++|...|+
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 55555442 1122233445556666666666666666554
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0034 Score=56.79 Aligned_cols=182 Identities=16% Similarity=0.173 Sum_probs=110.6
Q ss_pred cCCHHHHHHHHHhccC--------CCh-hhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHH-HHHHHhccCCH
Q 037414 253 CGSIDSAREIFDRMRQ--------KNV-ISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVS-LLYACSHTGLV 322 (577)
Q Consensus 253 ~g~~~~A~~~~~~~~~--------~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~-ll~a~~~~g~~ 322 (577)
..+.++..+++.++.. ++. ..|-.++-+....|+.+.|...++++... + |...-... -.--+-..|..
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhch
Confidence 3466777777776652 222 22444455556677777777777777665 2 33221111 11123345777
Q ss_pred HHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037414 323 EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM--SVEKDEGLWGALLGACRIHKNVDLAEMAAKSL 400 (577)
Q Consensus 323 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 400 (577)
++|.++++..+++ -+.|..+|---+-..-..|+--+|++-+... .+..|...|.-+...|...|+++.|.-.++++
T Consensus 103 ~~A~e~y~~lL~d--dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLED--DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhcc--CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 7888888777754 2334555555555555566655666555444 33457777888888888888888888888888
Q ss_pred HhcCCCCchhHHHHHHHHhccC---ChhHHHHHHHHHhhCC
Q 037414 401 LERQPQNPGHYVLLSNVYANAG---RWQDVAKIRDLMTRRR 438 (577)
Q Consensus 401 ~~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~~g 438 (577)
+=..|.++..+..+...+...| +.+-|.+++.+-.+..
T Consensus 181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 7777877777777777765554 3445666666655443
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00078 Score=55.38 Aligned_cols=97 Identities=14% Similarity=0.114 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---chhHHHH
Q 037414 343 KHYTCMVDLLGRAGRLDEALKLIESM-SVEKD----EGLWGALLGACRIHKNVDLAEMAAKSLLERQPQN---PGHYVLL 414 (577)
Q Consensus 343 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l 414 (577)
.++..+...+.+.|++++|.+.|+.+ ...|+ ...+..+...+...|+++.|...++.+.+..|.+ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 45667778889999999999999988 33343 3466678888999999999999999999988775 5678889
Q ss_pred HHHHhccCChhHHHHHHHHHhhCCC
Q 037414 415 SNVYANAGRWQDVAKIRDLMTRRRL 439 (577)
Q Consensus 415 ~~~~~~~g~~~~A~~~~~~m~~~g~ 439 (577)
..++.+.|++++|.+.++++.+...
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCc
Confidence 9999999999999999999987653
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0024 Score=54.75 Aligned_cols=85 Identities=16% Similarity=0.078 Sum_probs=35.0
Q ss_pred HHHHHcCChHHHHHHHHHhhhCCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcC
Q 037414 279 AAYGYHGQGKKALDLFPMMLSSRVLPNR--ITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAG 356 (577)
Q Consensus 279 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 356 (577)
..+...|++++|...|+........|+. .....+...+...|++++|...++... +-......+....+.|.+.|
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~---~~~~~~~~~~~~Gdi~~~~g 132 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIP---DEAFKALAAELLGDIYLAQG 132 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcc---CcchHHHHHHHHHHHHHHCC
Confidence 3444455555555555555444311111 122223344444455555554443321 11112223334444444555
Q ss_pred CHHHHHHHHH
Q 037414 357 RLDEALKLIE 366 (577)
Q Consensus 357 ~~~~A~~~~~ 366 (577)
++++|...|+
T Consensus 133 ~~~~A~~~y~ 142 (145)
T PF09976_consen 133 DYDEARAAYQ 142 (145)
T ss_pred CHHHHHHHHH
Confidence 5555544443
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.053 Score=53.33 Aligned_cols=128 Identities=16% Similarity=0.143 Sum_probs=88.9
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhhHhcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHhHH-HHHHHH
Q 037414 307 ITFVSLLYACSHTGLVEEGLRLFSSMWDDFA-VRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEKDEGLW-GALLGA 383 (577)
Q Consensus 307 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~-~~ll~~ 383 (577)
..|...+.+..+..-++.|..+|-+..+. + +.+++..+++++.-++ .|+..-|.++|+-- ..-||...| ...+.-
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~-~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~f 475 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKE-GIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLF 475 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhcc-CCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 34666777777777788888888888544 5 5677888888888665 57778888888754 334555433 445566
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCC--CchhHHHHHHHHhccCChhHHHHHHHHHhh
Q 037414 384 CRIHKNVDLAEMAAKSLLERQPQ--NPGHYVLLSNVYANAGRWQDVAKIRDLMTR 436 (577)
Q Consensus 384 ~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 436 (577)
+...++-+.|..+|+...+.-.. -...|..++.--..-|+...+..+-+.|.+
T Consensus 476 Li~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 476 LIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 67778888888888866543222 246778888777778888777776666654
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.60 E-value=9.2e-05 Score=56.80 Aligned_cols=78 Identities=18% Similarity=0.272 Sum_probs=46.2
Q ss_pred cCCHHHHHHHHHhC-CCCC---CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHH
Q 037414 355 AGRLDEALKLIESM-SVEK---DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKI 430 (577)
Q Consensus 355 ~g~~~~A~~~~~~m-~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 430 (577)
.|++++|+.+++++ ...| +...|-.+..++.+.|++++|..++++ .+.+|.++.....++.+|.+.|++++|.++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 35666666666665 1122 334455566666677777777777766 555555555555667777777777777776
Q ss_pred HHH
Q 037414 431 RDL 433 (577)
Q Consensus 431 ~~~ 433 (577)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 654
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00034 Score=51.23 Aligned_cols=64 Identities=16% Similarity=0.180 Sum_probs=58.2
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccC-ChhHHHHHHHHHhh
Q 037414 373 DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAG-RWQDVAKIRDLMTR 436 (577)
Q Consensus 373 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~ 436 (577)
+..+|..+...+...|++++|+..|+++++.+|+++..|..+..+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 45688888999999999999999999999999999999999999999999 79999999987664
|
... |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0051 Score=59.17 Aligned_cols=134 Identities=13% Similarity=0.133 Sum_probs=101.4
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHhhhCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHH
Q 037414 272 ISWSAMIAAYGYHGQGKKALDLFPMMLSSR-VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVD 350 (577)
Q Consensus 272 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 350 (577)
.+|..++...-+.+..+.|..+|.+..+.+ ...+.....+++.- ...++.+.|..+|+..++. +..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~-~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEY-YCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHH-HTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 467888888888888999999999998653 23444444444433 3357777899999999876 4556788899999
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCCCH----hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 037414 351 LLGRAGRLDEALKLIESM-SVEKDE----GLWGALLGACRIHKNVDLAEMAAKSLLERQPQNP 408 (577)
Q Consensus 351 ~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 408 (577)
.+.+.|+.+.|..+|++. ..-|.. ..|...+..-.+.|+.+....+.+++.+..|.+.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999987 323333 4999999999999999999999999999988754
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0015 Score=65.43 Aligned_cols=121 Identities=6% Similarity=0.026 Sum_probs=101.4
Q ss_pred cCCCCCHHHHHHHHHHHHcCCChHHHHHHHhcCCCC------CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcc
Q 037414 86 GGTLTNLIVANKLLYIYALHKALTDAHALFNGMKER------DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSY 159 (577)
Q Consensus 86 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 159 (577)
.+.+.+......+++......+++++..++.+.... -..+..++|+.|.+.|..++++.+++.=...|+-||.+
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 344667777777888888888888899888776542 23356799999999999999999999999999999999
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhC
Q 037414 160 TLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKC 206 (577)
Q Consensus 160 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 206 (577)
|++.||+.+.+.|++..|.++...|...+...+..|+...+.++.+.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999999998888777777777666666666
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00045 Score=49.87 Aligned_cols=58 Identities=22% Similarity=0.301 Sum_probs=44.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhC
Q 037414 380 LLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRR 437 (577)
Q Consensus 380 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 437 (577)
+...+...|++++|+..++++++..|.++..+..+..++...|++++|...+++..+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455677788888888888888888888888888888888888888888888777654
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.28 Score=52.61 Aligned_cols=387 Identities=12% Similarity=0.069 Sum_probs=210.7
Q ss_pred hccCCCCCCCCCcccCccCCCCCCCCCCCChhhHHHHHHhccC---hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 037414 30 LEPHGHEQNPMNPRVPMQMGPDCQFTRSVDPKFFISSLLSCRN---IFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHK 106 (577)
Q Consensus 30 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~a~~~---~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 106 (577)
+.|.|+.++|+.+++.....+ .-|..|+..+-..+.+ .+.+..+++...+. .|+......+..+|.|.+
T Consensus 53 l~r~gk~~ea~~~Le~~~~~~------~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~ 124 (932)
T KOG2053|consen 53 LFRLGKGDEALKLLEALYGLK------GTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREK 124 (932)
T ss_pred HHHhcCchhHHHHHhhhccCC------CCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHH
Confidence 678999999998887776431 1155555544444433 77888888887754 566888888899999988
Q ss_pred ChH----HHHHHHhcCCCCCcchHHHHHHHHHhC-CCh---------hHHHHHHHHHHHCCCCC-CcchHHHHHHHHhcC
Q 037414 107 ALT----DAHALFNGMKERDSVSWSVMVGGFSKV-ADF---------INCFETFREFIRCGMQL-DSYTLPFVIRACRDR 171 (577)
Q Consensus 107 ~~~----~A~~~f~~m~~~~~~~~~~li~~~~~~-g~~---------~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~ 171 (577)
++. .|.+++...+++--.-|+.+ +.+.+. ..+ .-|.+.++.+.+.+-+. +..-...-+......
T Consensus 125 ~yk~qQkaa~~LyK~~pk~~yyfWsV~-Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~ 203 (932)
T KOG2053|consen 125 SYKKQQKAALQLYKNFPKRAYYFWSVI-SLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQ 203 (932)
T ss_pred HHHHHHHHHHHHHHhCCcccchHHHHH-HHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhc
Confidence 765 57788887776555556543 333332 222 23555666666554111 122222223345567
Q ss_pred CChHHHHHHHH-HHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHH-
Q 037414 172 KDIVMGRLIHD-IVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDM- 249 (577)
Q Consensus 172 ~~~~~a~~~~~-~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~- 249 (577)
+..++|..++. ...+.-...+...-+--++.+...+++.+..++-.++..++...|...+. .++..|-..
T Consensus 204 ~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Ddy~~~~~--------sv~klLe~~~ 275 (932)
T KOG2053|consen 204 GKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDDYKIYTD--------SVFKLLELLN 275 (932)
T ss_pred ccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcchHHHHH--------HHHHHHHhcc
Confidence 88999999884 33333334455566677889999999988777666655433221222110 012222111
Q ss_pred -------HHhcCCHHHHHHHHHhccC-CChhhHHHHHHHHH---HcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhc
Q 037414 250 -------YAKCGSIDSAREIFDRMRQ-KNVISWSAMIAAYG---YHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSH 318 (577)
Q Consensus 250 -------~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~---~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 318 (577)
+...+.++...+...+... ..--.|-+-+.++. .-|+.+++.-.|-+- -|-.|- |..=+..|..
T Consensus 276 ~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~k--fg~kpc---c~~Dl~~yl~ 350 (932)
T KOG2053|consen 276 KEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFKK--FGDKPC---CAIDLNHYLG 350 (932)
T ss_pred cccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHHH--hCCCcH---hHhhHHHhhc
Confidence 2223333333333333322 12223334444443 347777765554332 232321 2222222222
Q ss_pred cCCHHHHHHHHHHhhHhcCCCCCHH-------HHHHHHHHHHHcCC-----HHHHHHHHHhC------C------CCCCH
Q 037414 319 TGLVEEGLRLFSSMWDDFAVRPDVK-------HYTCMVDLLGRAGR-----LDEALKLIESM------S------VEKDE 374 (577)
Q Consensus 319 ~g~~~~a~~~~~~m~~~~~~~p~~~-------~~~~li~~~~~~g~-----~~~A~~~~~~m------~------~~p~~ 374 (577)
.=..++-..++.... +..++.. -+.+.+....-.|. -+.-..++++. + .-|..
T Consensus 351 ~l~~~q~~~l~~~l~---~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE 427 (932)
T KOG2053|consen 351 HLNIDQLKSLMSKLV---LADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTE 427 (932)
T ss_pred cCCHHHHHHHHHHhh---ccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccc
Confidence 223333333333332 1122211 12222222222231 11222222211 1 11221
Q ss_pred ---------hHHHHHHHHHHhcCCH---HHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCCCcc
Q 037414 375 ---------GLWGALLGACRIHKNV---DLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKK 441 (577)
Q Consensus 375 ---------~~~~~ll~~~~~~g~~---~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~ 441 (577)
-+-+.|+..|.+.++. -+|+-+++..+...|.|..+-..|+.+|.-.|-+..|.+.++.|--+.|..
T Consensus 428 ~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~ 506 (932)
T KOG2053|consen 428 YSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQT 506 (932)
T ss_pred cccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhh
Confidence 1456777889888875 467777788888889998888999999999999999999999886555543
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.18 Score=54.07 Aligned_cols=217 Identities=13% Similarity=0.148 Sum_probs=135.9
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHH--HhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHH
Q 037414 133 FSKVADFINCFETFREFIRCGMQLDSYTLPFVIRA--CRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID 210 (577)
Q Consensus 133 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~--~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 210 (577)
....+++.+|+.....+.+. .||. .|..++.+ ..+.|..++|..+++.....+. .|..|...+-.+|...|+.+
T Consensus 19 ~ld~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhhhh
Confidence 34457788888888887764 3553 35555665 4677888888887777665553 37788888888888888888
Q ss_pred HHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHH----HHHHHHhccCCChhhHHHHHHHHHHcC-
Q 037414 211 DARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDS----AREIFDRMRQKNVISWSAMIAAYGYHG- 285 (577)
Q Consensus 211 ~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~li~~~~~~g- 285 (577)
+|..+|++....+ |+......+-.+|.+.+++.+ |.+++...++.--..|+. ++.+.+.-
T Consensus 95 ~~~~~Ye~~~~~~--------------P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV-~Slilqs~~ 159 (932)
T KOG2053|consen 95 EAVHLYERANQKY--------------PSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSV-ISLILQSIF 159 (932)
T ss_pred HHHHHHHHHHhhC--------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHH-HHHHHHhcc
Confidence 8888888876543 344455566667777666653 556666555555555554 33333321
Q ss_pred C---------hHHHHHHHHHhhhCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHc
Q 037414 286 Q---------GKKALDLFPMMLSSR-VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRA 355 (577)
Q Consensus 286 ~---------~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 355 (577)
. ..-|.+.++.+.+.+ -.-+..-....+......|..++|..++..-..+.-..-+...-+--++.+...
T Consensus 160 ~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l 239 (932)
T KOG2053|consen 160 SENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLL 239 (932)
T ss_pred CCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHh
Confidence 1 124566677776654 222222233334455677889999998843322212222334445667888889
Q ss_pred CCHHHHHHHHHhC
Q 037414 356 GRLDEALKLIESM 368 (577)
Q Consensus 356 g~~~~A~~~~~~m 368 (577)
+++.+..++-.++
T Consensus 240 ~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 240 NRWQELFELSSRL 252 (932)
T ss_pred cChHHHHHHHHHH
Confidence 9988877776665
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0016 Score=57.90 Aligned_cols=97 Identities=18% Similarity=0.278 Sum_probs=79.2
Q ss_pred HHHHHhc--cCCChhhHHHHHHHHHHc-----CChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcc-------------
Q 037414 260 REIFDRM--RQKNVISWSAMIAAYGYH-----GQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHT------------- 319 (577)
Q Consensus 260 ~~~~~~~--~~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~------------- 319 (577)
...|+.. ..+|-.+|..++..|.+. |+.+=....++.|.+.|+.-|..+|+.||+.+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 4566665 457888999999988764 77888889999999999999999999999987543
Q ss_pred ---CCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCC
Q 037414 320 ---GLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGR 357 (577)
Q Consensus 320 ---g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 357 (577)
.+-+-|.+++++| +.+|+-||.+++..+++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qM-E~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQM-ENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHH-HHcCCCCcHHHHHHHHHHhccccH
Confidence 2346688899999 567999999999999998877664
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0014 Score=65.48 Aligned_cols=104 Identities=12% Similarity=0.028 Sum_probs=84.6
Q ss_pred HHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCH
Q 037414 313 LYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNV 390 (577)
Q Consensus 313 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~ 390 (577)
...+...|++++|.++|..+++. -+.+...|..+..+|.+.|++++|+..+++. .+.| +...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 45566789999999999999853 2234677888888999999999999999888 5556 455888888899999999
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 037414 391 DLAEMAAKSLLERQPQNPGHYVLLSNVY 418 (577)
Q Consensus 391 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 418 (577)
++|+..++++++++|.++.....+..+.
T Consensus 87 ~eA~~~~~~al~l~P~~~~~~~~l~~~~ 114 (356)
T PLN03088 87 QTAKAALEKGASLAPGDSRFTKLIKECD 114 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 9999999999999999987766654443
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0029 Score=56.08 Aligned_cols=95 Identities=19% Similarity=0.132 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 037414 342 VKHYTCMVDLLGRAGRLDEALKLIESM-SVEKD----EGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSN 416 (577)
Q Consensus 342 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 416 (577)
...+..+...|...|++++|...|++. ...|+ ...|..+...+...|++++|...++++++..|.++..+..+..
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 345566666677777777777777765 22222 3467777777888888888888888888888888888888888
Q ss_pred HHhccCC--------------hhHHHHHHHHHhh
Q 037414 417 VYANAGR--------------WQDVAKIRDLMTR 436 (577)
Q Consensus 417 ~~~~~g~--------------~~~A~~~~~~m~~ 436 (577)
+|...|+ +++|.+++++..+
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~ 148 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR 148 (172)
T ss_pred HHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh
Confidence 8877766 4556666555544
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0033 Score=49.52 Aligned_cols=80 Identities=10% Similarity=0.047 Sum_probs=67.2
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCC-CCCcchHHHHHHHHhcCC--------ChHHHHHHHHHHHHcCCCCcHHHH
Q 037414 126 WSVMVGGFSKVADFINCFETFREFIRCGM-QLDSYTLPFVIRACRDRK--------DIVMGRLIHDIVLKSGLDIDQFVC 196 (577)
Q Consensus 126 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~~ 196 (577)
-...|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. .+-....+|+.|+..++.|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34556667777999999999999999999 999999999999876543 233567889999999999999999
Q ss_pred HHHHHHHHh
Q 037414 197 AALVDMYAK 205 (577)
Q Consensus 197 ~~li~~~~~ 205 (577)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999988765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0029 Score=49.81 Aligned_cols=81 Identities=11% Similarity=0.175 Sum_probs=65.4
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHhhhCCC-CCCHHHHHHHHHHHhccC--------CHHHHHHHHHHhhHhcCCCCCHH
Q 037414 273 SWSAMIAAYGYHGQGKKALDLFPMMLSSRV-LPNRITFVSLLYACSHTG--------LVEEGLRLFSSMWDDFAVRPDVK 343 (577)
Q Consensus 273 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~~~~g--------~~~~a~~~~~~m~~~~~~~p~~~ 343 (577)
|-...|..+...+++.....+|+.+++.|+ -|+..+|+.++.+.++.. .+-+...+++.|+.. +++|+.+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHH
Confidence 334556667777999999999999999999 899999999999887653 244567788888865 8999999
Q ss_pred HHHHHHHHHHH
Q 037414 344 HYTCMVDLLGR 354 (577)
Q Consensus 344 ~~~~li~~~~~ 354 (577)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 99999987765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0025 Score=56.23 Aligned_cols=94 Identities=16% Similarity=-0.013 Sum_probs=74.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 037414 341 DVKHYTCMVDLLGRAGRLDEALKLIESM-SVEKD----EGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLS 415 (577)
Q Consensus 341 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 415 (577)
....|..+...+...|++++|...|++. ...|+ ..+|..+...+...|+.++|+..++++++..|.....+..+.
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 3556677777788889999999988877 33332 247888888899999999999999999999998888888888
Q ss_pred HHHh-------ccCChhHHHHHHHHH
Q 037414 416 NVYA-------NAGRWQDVAKIRDLM 434 (577)
Q Consensus 416 ~~~~-------~~g~~~~A~~~~~~m 434 (577)
.+|. ..|++++|...+++-
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 8888 788888776666543
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0042 Score=47.89 Aligned_cols=57 Identities=21% Similarity=0.182 Sum_probs=25.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 037414 275 SAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSM 332 (577)
Q Consensus 275 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 332 (577)
..+...+...|++++|...+++..+.. +.+...+..+...+...+++++|.+.++..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 60 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKA 60 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555544431 112233333444444444444444444444
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.026 Score=56.68 Aligned_cols=124 Identities=19% Similarity=0.270 Sum_probs=73.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhccC-----CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 037414 242 LGTAVIDMYAKCGSIDSAREIFDRMRQ-----KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYAC 316 (577)
Q Consensus 242 ~~~~Li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 316 (577)
+|..+++.-.+..-+..|+.+|.+..+ ..+..+++++..||. ++..-|.++|+-=.+. ..-+..--...++-+
T Consensus 368 v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL 445 (656)
T KOG1914|consen 368 VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDFL 445 (656)
T ss_pred ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHHH
Confidence 455566666666666677777766653 245566666666653 4556666776653332 111222233455556
Q ss_pred hccCCHHHHHHHHHHhhHhcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 037414 317 SHTGLVEEGLRLFSSMWDDFAVRPD--VKHYTCMVDLLGRAGRLDEALKLIESM 368 (577)
Q Consensus 317 ~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m 368 (577)
.+.++-..++.+|+..+.. ++.|+ ...|..+++-=..-|++..+.++-+++
T Consensus 446 ~~lNdd~N~R~LFEr~l~s-~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~ 498 (656)
T KOG1914|consen 446 SHLNDDNNARALFERVLTS-VLSADKSKEIWDRMLEYESNVGDLNSILKLEKRR 498 (656)
T ss_pred HHhCcchhHHHHHHHHHhc-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 6666667777777777654 45544 466777777666677777776666554
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.015 Score=56.17 Aligned_cols=142 Identities=15% Similarity=0.164 Sum_probs=84.6
Q ss_pred HHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcc-CCHHHHHHHHHHhhHhcCCCCC----HHHHHHHHHH
Q 037414 277 MIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHT-GLVEEGLRLFSSMWDDFAVRPD----VKHYTCMVDL 351 (577)
Q Consensus 277 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~-g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~ 351 (577)
.+..|...|++..|-..+.+ +...|... |++++|.+.|+...+-+.-... ..++.-+...
T Consensus 100 A~~~y~~~G~~~~aA~~~~~---------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l 164 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLKE---------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADL 164 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHHH---------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHH---------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHH
Confidence 45566666666666555544 44566676 8888888888887653322222 3456667788
Q ss_pred HHHcCCHHHHHHHHHhCC---CC-----CCHh-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc-----hhHHHHHHH
Q 037414 352 LGRAGRLDEALKLIESMS---VE-----KDEG-LWGALLGACRIHKNVDLAEMAAKSLLERQPQNP-----GHYVLLSNV 417 (577)
Q Consensus 352 ~~~~g~~~~A~~~~~~m~---~~-----p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-----~~~~~l~~~ 417 (577)
+.+.|++++|.++|++.. .. .+.. .+-..+-.+...||...|.+.+++....+|.-. .....|+.+
T Consensus 165 ~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A 244 (282)
T PF14938_consen 165 YARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEA 244 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHH
Confidence 999999999999998871 11 1121 222333356677999999999999998887522 234456666
Q ss_pred Hhc--cCChhHHHHHHHH
Q 037414 418 YAN--AGRWQDVAKIRDL 433 (577)
Q Consensus 418 ~~~--~g~~~~A~~~~~~ 433 (577)
|-. ...+++|..-|+.
T Consensus 245 ~~~~D~e~f~~av~~~d~ 262 (282)
T PF14938_consen 245 YEEGDVEAFTEAVAEYDS 262 (282)
T ss_dssp HHTT-CCCHHHHCHHHTT
T ss_pred HHhCCHHHHHHHHHHHcc
Confidence 643 2344444444433
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0016 Score=47.00 Aligned_cols=61 Identities=26% Similarity=0.281 Sum_probs=48.5
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 037414 348 MVDLLGRAGRLDEALKLIESM-SVEKD-EGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNP 408 (577)
Q Consensus 348 li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 408 (577)
+...+.+.|++++|.+.|++. ...|+ ...|..+...+...|++++|...++++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 345677889999999999888 45564 45888888889999999999999999999988864
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.009 Score=52.93 Aligned_cols=130 Identities=15% Similarity=0.163 Sum_probs=86.0
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-CHHHHH
Q 037414 270 NVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPN--RITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP-DVKHYT 346 (577)
Q Consensus 270 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~ 346 (577)
....+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+.+.++. .| +...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---NPKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHH
Confidence 345677777788888888888888888876543332 346677777888888888888888887642 33 345555
Q ss_pred HHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCC
Q 037414 347 CMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGR 423 (577)
Q Consensus 347 ~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 423 (577)
.+...|...|+...+..-++.. ...+++|.++++++.+.+|++ |..++..+...|+
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 6666677766665554332221 112577888888888888876 5555555554443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.023 Score=54.87 Aligned_cols=214 Identities=12% Similarity=0.177 Sum_probs=113.7
Q ss_pred ChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCc-----chHHHHHHHHhcCCChHHHHHHH
Q 037414 107 ALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDS-----YTLPFVIRACRDRKDIVMGRLIH 181 (577)
Q Consensus 107 ~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~~~~~~~~~~~a~~~~ 181 (577)
++++|..+|++ ....|-..|++++|.+.|.+....-.+.+. ..|......+.+ .++++|..
T Consensus 30 ~~e~Aa~~y~~-----------Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-~~~~~Ai~-- 95 (282)
T PF14938_consen 30 DYEEAADLYEK-----------AANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-GDPDEAIE-- 95 (282)
T ss_dssp HHHHHHHHHHH-----------HHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TTHHHHHH--
T ss_pred CHHHHHHHHHH-----------HHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hCHHHHHH--
Confidence 55566555443 455677777777777777665432111000 011111111211 13333333
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhc-CCHHHHH
Q 037414 182 DIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKC-GSIDSAR 260 (577)
Q Consensus 182 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~-g~~~~A~ 260 (577)
.|...+..|...|++..|-+++.. +...|-+. |++++|.
T Consensus 96 -------------~~~~A~~~y~~~G~~~~aA~~~~~---------------------------lA~~ye~~~~d~e~Ai 135 (282)
T PF14938_consen 96 -------------CYEKAIEIYREAGRFSQAAKCLKE---------------------------LAEIYEEQLGDYEKAI 135 (282)
T ss_dssp -------------HHHHHHHHHHHCT-HHHHHHHHHH---------------------------HHHHHCCTT--HHHHH
T ss_pred -------------HHHHHHHHHHhcCcHHHHHHHHHH---------------------------HHHHHHHHcCCHHHHH
Confidence 344445667777777776665543 45566666 7777777
Q ss_pred HHHHhccC-----CC----hhhHHHHHHHHHHcCChHHHHHHHHHhhhCCC-----CCCHH-HHHHHHHHHhccCCHHHH
Q 037414 261 EIFDRMRQ-----KN----VISWSAMIAAYGYHGQGKKALDLFPMMLSSRV-----LPNRI-TFVSLLYACSHTGLVEEG 325 (577)
Q Consensus 261 ~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-----~p~~~-t~~~ll~a~~~~g~~~~a 325 (577)
+.|++..+ .. ...+..+...+.+.|++++|.++|++....-. +++.. .|...+-.+...|++..|
T Consensus 136 ~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A 215 (282)
T PF14938_consen 136 EYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAA 215 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHH
Confidence 77776542 11 12355667778888999999999988765422 22222 233333355567888888
Q ss_pred HHHHHHhhHh-cCCCCC--HHHHHHHHHHHHH--cCCHHHHHHHHHhCCCCCCHh
Q 037414 326 LRLFSSMWDD-FAVRPD--VKHYTCMVDLLGR--AGRLDEALKLIESMSVEKDEG 375 (577)
Q Consensus 326 ~~~~~~m~~~-~~~~p~--~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~p~~~ 375 (577)
...++..... .++..+ ......|++++-. ...+++|..-|+.+. +.|..
T Consensus 216 ~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~-~ld~w 269 (282)
T PF14938_consen 216 RKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS-RLDNW 269 (282)
T ss_dssp HHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS----HH
T ss_pred HHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC-ccHHH
Confidence 8888887532 122222 3445566676653 335777777777774 33443
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.013 Score=61.24 Aligned_cols=65 Identities=20% Similarity=0.135 Sum_probs=44.7
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCC
Q 037414 373 DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 373 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
+...|.++.-.....|++++|...++++++++| +...|..+...|...|+.++|.+.+++....+
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 345566665555566777777777777777777 35677777777777777777777777665544
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00053 Score=50.02 Aligned_cols=53 Identities=21% Similarity=0.407 Sum_probs=43.4
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhC
Q 037414 385 RIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRR 437 (577)
Q Consensus 385 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 437 (577)
...|++++|+..++++.+.+|.++..+..++.+|.+.|++++|.++++.+...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45788888888888888888888888888888888888888888888776654
|
... |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0067 Score=60.61 Aligned_cols=101 Identities=14% Similarity=0.056 Sum_probs=81.3
Q ss_pred HHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-CHHHHHHHHHHHHHc
Q 037414 277 MIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP-DVKHYTCMVDLLGRA 355 (577)
Q Consensus 277 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~ 355 (577)
-...+...|++++|+++|++.++.. +-+...|..+..+|...|++++|...++.+++ +.| +...|..+..+|...
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHHh
Confidence 3456678899999999999999863 33566788888899999999999999999974 445 567888888999999
Q ss_pred CCHHHHHHHHHhC-CCCCCHhHHHHHH
Q 037414 356 GRLDEALKLIESM-SVEKDEGLWGALL 381 (577)
Q Consensus 356 g~~~~A~~~~~~m-~~~p~~~~~~~ll 381 (577)
|++++|...|++. .+.|+.......+
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 9999999999987 5566655444444
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0036 Score=60.24 Aligned_cols=130 Identities=12% Similarity=0.132 Sum_probs=98.3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHhHHHHHHHHH
Q 037414 307 ITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM--SVEKDEGLWGALLGAC 384 (577)
Q Consensus 307 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~ 384 (577)
.+|..++....+.+..+.|+++|....+.......+....+++. |...++.+.|.++|+.. ....+...|...+.-+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 46788889999999999999999999754233334444444443 33356677799999988 3345777899999999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCc---hhHHHHHHHHhccCChhHHHHHHHHHhhC
Q 037414 385 RIHKNVDLAEMAAKSLLERQPQNP---GHYVLLSNVYANAGRWQDVAKIRDLMTRR 437 (577)
Q Consensus 385 ~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 437 (577)
...++.+.|..+|++.+..-|.+. ..|...++.=.+.|+++.+.++.+++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999998765543 58888999999999999999999888764
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.28 Score=51.07 Aligned_cols=90 Identities=19% Similarity=0.205 Sum_probs=50.2
Q ss_pred CCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC
Q 037414 189 LDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ 268 (577)
Q Consensus 189 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~ 268 (577)
++.+....-.+.+++...|.-++|.+.|-+-..+. +-+..|...+++.+|.++-+...-
T Consensus 848 Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk---------------------aAv~tCv~LnQW~~avelaq~~~l 906 (1189)
T KOG2041|consen 848 LPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK---------------------AAVHTCVELNQWGEAVELAQRFQL 906 (1189)
T ss_pred cCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH---------------------HHHHHHHHHHHHHHHHHHHHhccc
Confidence 34555666666677777777777766665543321 235556666677777776666554
Q ss_pred CChhhHHH--------------HHHHHHHcCChHHHHHHHHHhhh
Q 037414 269 KNVISWSA--------------MIAAYGYHGQGKKALDLFPMMLS 299 (577)
Q Consensus 269 ~~~~~~~~--------------li~~~~~~g~~~~A~~l~~~m~~ 299 (577)
|.+.+.-+ -|..+.+.|+.-.|.+++.+|.+
T Consensus 907 ~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 907 PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 44443221 13334445555555555555543
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0018 Score=49.59 Aligned_cols=80 Identities=21% Similarity=0.327 Sum_probs=40.4
Q ss_pred cCChHHHHHHHHHhhhCCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC-HHHHHHHHHHHHHcCCHHHH
Q 037414 284 HGQGKKALDLFPMMLSSRVL-PNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD-VKHYTCMVDLLGRAGRLDEA 361 (577)
Q Consensus 284 ~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A 361 (577)
.|+++.|+.+++++.+.... |+...+..+..++.+.|++++|..+++. . ...|+ ....-.+..+|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 45666666666666654321 1333333455666666666666666655 1 11222 22233335556666666666
Q ss_pred HHHHHh
Q 037414 362 LKLIES 367 (577)
Q Consensus 362 ~~~~~~ 367 (577)
.+.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 666553
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0058 Score=61.30 Aligned_cols=116 Identities=11% Similarity=0.123 Sum_probs=91.6
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHhccC-CC-----hhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHH
Q 037414 239 DVILGTAVIDMYAKCGSIDSAREIFDRMRQ-KN-----VISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSL 312 (577)
Q Consensus 239 ~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~-~~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 312 (577)
+......+++......+++.+..++.+... |+ ..|..++|..|.+.|..++++.+++.=...|+-||..||+.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 334445567777777788889888887753 21 235569999999999999999999999999999999999999
Q ss_pred HHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHc
Q 037414 313 LYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRA 355 (577)
Q Consensus 313 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 355 (577)
++.+.+.|++..|.++...|... ....+..++..-+.++.+.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQ-e~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQ-EEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHh
Confidence 99999999999999999888654 5555666666555555554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0046 Score=55.01 Aligned_cols=72 Identities=7% Similarity=0.084 Sum_probs=45.8
Q ss_pred ChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhc----------------CCChHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 037414 138 DFINCFETFREFIRCGMQLDSYTLPFVIRACRD----------------RKDIVMGRLIHDIVLKSGLDIDQFVCAALVD 201 (577)
Q Consensus 138 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----------------~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 201 (577)
..+=....+..|.+-|+.-|..+|+.||+.+=+ -.+-+-|.+++++|...|+-||..++..|++
T Consensus 67 HVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~ 146 (228)
T PF06239_consen 67 HVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLN 146 (228)
T ss_pred hHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 333334444455555555555555555554322 1234567888888888888889889988888
Q ss_pred HHHhCCCH
Q 037414 202 MYAKCKVI 209 (577)
Q Consensus 202 ~~~~~g~~ 209 (577)
.+++.+..
T Consensus 147 iFG~~s~p 154 (228)
T PF06239_consen 147 IFGRKSHP 154 (228)
T ss_pred HhccccHH
Confidence 88777653
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0024 Score=47.29 Aligned_cols=57 Identities=12% Similarity=0.156 Sum_probs=47.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCC
Q 037414 382 GACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 382 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
..+...++++.|.++++.+++.+|.++..+.....+|.+.|++++|.+.++...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 456778888888888888888888888888888888888888888888888877544
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.017 Score=60.37 Aligned_cols=139 Identities=17% Similarity=0.063 Sum_probs=100.6
Q ss_pred CChhhHHHHHHHHHHc--C---ChHHHHHHHHHhhhCCCCCCH-HHHHHHHHHHhcc--------CCHHHHHHHHHHhhH
Q 037414 269 KNVISWSAMIAAYGYH--G---QGKKALDLFPMMLSSRVLPNR-ITFVSLLYACSHT--------GLVEEGLRLFSSMWD 334 (577)
Q Consensus 269 ~~~~~~~~li~~~~~~--g---~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~--------g~~~~a~~~~~~m~~ 334 (577)
.|...|...+.+.... + +..+|..+|++..+. .||- ..+..+..++... .++..+.+.......
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 5778899888885543 2 367999999999985 6664 4455444444222 123344444444322
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 037414 335 DFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPG 409 (577)
Q Consensus 335 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 409 (577)
......+...|.++.-.+...|++++|...+++. ...|+...|..+...+...|+.++|...++++..++|.++.
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 1123334577877776677789999999999998 66788889999999999999999999999999999999884
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0068 Score=56.75 Aligned_cols=101 Identities=15% Similarity=0.105 Sum_probs=83.7
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHH---hcCCHHHHHHHHHHHHhcCCCCchhHHH
Q 037414 339 RPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACR---IHKNVDLAEMAAKSLLERQPQNPGHYVL 413 (577)
Q Consensus 339 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~---~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 413 (577)
+-|.+.|-.|...|.+.|+.+.|..-|.+. .+.| +...+..+..++. ......++..+++++++.+|.+..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 456899999999999999999999999887 3333 4455655555533 3335688999999999999999999999
Q ss_pred HHHHHhccCChhHHHHHHHHHhhCCC
Q 037414 414 LSNVYANAGRWQDVAKIRDLMTRRRL 439 (577)
Q Consensus 414 l~~~~~~~g~~~~A~~~~~~m~~~g~ 439 (577)
|...+...|++.+|...++.|.+...
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 99999999999999999999998654
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0029 Score=58.86 Aligned_cols=97 Identities=21% Similarity=0.173 Sum_probs=78.0
Q ss_pred HHhccCCHHHHHHHHHHhhHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHh-HHHHHHHHHHhcCCHH
Q 037414 315 ACSHTGLVEEGLRLFSSMWDDFAVRPD-VKHYTCMVDLLGRAGRLDEALKLIESM-SVEKDEG-LWGALLGACRIHKNVD 391 (577)
Q Consensus 315 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~~~ 391 (577)
-..+.+++++|...|...+ .+.|+ ...|.--..+|.+.|.++.|.+-.+.. .+.|... +|..|..+|...|+++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHH
Confidence 3567789999999999997 46665 455555678899999999999877766 6667544 9999999999999999
Q ss_pred HHHHHHHHHHhcCCCCchhHHHH
Q 037414 392 LAEMAAKSLLERQPQNPGHYVLL 414 (577)
Q Consensus 392 ~a~~~~~~~~~~~p~~~~~~~~l 414 (577)
+|++.|+++++++|++......|
T Consensus 167 ~A~~aykKaLeldP~Ne~~K~nL 189 (304)
T KOG0553|consen 167 EAIEAYKKALELDPDNESYKSNL 189 (304)
T ss_pred HHHHHHHhhhccCCCcHHHHHHH
Confidence 99999999999999987443333
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.067 Score=55.38 Aligned_cols=240 Identities=14% Similarity=0.093 Sum_probs=152.9
Q ss_pred CCCcchHHHHHHHHhcCCChHHHHHHHHHHHHc-CCC--------CcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChh
Q 037414 155 QLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKS-GLD--------IDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLV 225 (577)
Q Consensus 155 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 225 (577)
.|.+..|..+.......-.++.|++.|-+.... |++ .+...-.+=+.+| .|++++|++++-+|..+|.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrDL- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRDL- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhhh-
Confidence 366666776666655555666666655443221 111 0111112223333 5889999999999888774
Q ss_pred HHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC--C---ChhhHHHHHHHHHHcCChHHHHHHHHHhhhC
Q 037414 226 TWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ--K---NVISWSAMIAAYGYHGQGKKALDLFPMMLSS 300 (577)
Q Consensus 226 ~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~--~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 300 (577)
-|.++.+.|++-...++++.-.. . -...|+.+...++....+++|.+.|..-...
T Consensus 766 --------------------Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~ 825 (1189)
T KOG2041|consen 766 --------------------AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT 825 (1189)
T ss_pred --------------------hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 37888889999888888776432 1 1357888999998888899998888764321
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHH
Q 037414 301 RVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGAL 380 (577)
Q Consensus 301 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l 380 (577)
...+.++.+..++++-+.+-..+ +.+......+.+++.+.|.-++|.+.+-+-+ .|. +.
T Consensus 826 ---------e~~~ecly~le~f~~LE~la~~L------pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s-~pk-----aA 884 (1189)
T KOG2041|consen 826 ---------ENQIECLYRLELFGELEVLARTL------PEDSELLPVMADMFTSVGMCDQAVEAYLRRS-LPK-----AA 884 (1189)
T ss_pred ---------HhHHHHHHHHHhhhhHHHHHHhc------CcccchHHHHHHHHHhhchHHHHHHHHHhcc-CcH-----HH
Confidence 23556666666666655554444 3445566678889999999999988887765 332 34
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCC-----------CchhHHHHHHHHhccCChhHHHHHHHHHhhCC
Q 037414 381 LGACRIHKNVDLAEMAAKSLLERQPQ-----------NPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 381 l~~~~~~g~~~~a~~~~~~~~~~~p~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
+.+|...+++.+|.++.++..-.... ...-..--+..+.++|+.-+|.+++.+|.++.
T Consensus 885 v~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e 953 (1189)
T KOG2041|consen 885 VHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAERE 953 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHH
Confidence 56677777787777766542110000 00112335667888899999999988887653
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.065 Score=50.25 Aligned_cols=173 Identities=12% Similarity=0.050 Sum_probs=104.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhccC--CChh-h---HHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhc-
Q 037414 246 VIDMYAKCGSIDSAREIFDRMRQ--KNVI-S---WSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSH- 318 (577)
Q Consensus 246 Li~~~~~~g~~~~A~~~~~~~~~--~~~~-~---~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~- 318 (577)
....+.+.|++++|.+.|+++.. |+.. . .-.++.+|.+.+++++|...+++..+.-..-...-+...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 44556678888888888888865 3321 1 234566778888888888888888775322222333334444331
Q ss_pred -cC---------------C---HHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHH
Q 037414 319 -TG---------------L---VEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGA 379 (577)
Q Consensus 319 -~g---------------~---~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ 379 (577)
.+ + ..+|...|+.++++ |-...-..+|..-+..+...--. ---.
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~----------------yP~S~ya~~A~~rl~~l~~~la~-~e~~ 180 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG----------------YPNSQYTTDATKRLVFLKDRLAK-YELS 180 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH----------------CcCChhHHHHHHHHHHHHHHHHH-HHHH
Confidence 10 1 12333444444432 32233344444433333100000 0113
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCc---hhHHHHHHHHhccCChhHHHHHHHHHh
Q 037414 380 LLGACRIHKNVDLAEMAAKSLLERQPQNP---GHYVLLSNVYANAGRWQDVAKIRDLMT 435 (577)
Q Consensus 380 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~ 435 (577)
+..-|.+.|.+..|..-++.+++..|..+ .+...++.+|...|..++|.++...+.
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 44558889999999999999999987754 567788899999999999999887654
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0076 Score=56.16 Aligned_cols=100 Identities=16% Similarity=0.172 Sum_probs=80.1
Q ss_pred HHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC-HHHHHHHHHHHHHcC
Q 037414 278 IAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD-VKHYTCMVDLLGRAG 356 (577)
Q Consensus 278 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g 356 (577)
..-+.+.+++.+|+..|.+.++. .+-|.+-|..=..+|++.|.++.|.+-.+..+ .+.|. ...|..|-.+|...|
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l-~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIEL-DPTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHHHHHHHHHHHHHHccC
Confidence 34567789999999999999885 23456677778889999999999988888776 45665 678999999999999
Q ss_pred CHHHHHHHHHhC-CCCCCHhHHHHHH
Q 037414 357 RLDEALKLIESM-SVEKDEGLWGALL 381 (577)
Q Consensus 357 ~~~~A~~~~~~m-~~~p~~~~~~~ll 381 (577)
++++|.+.|++. .+.|+-.+|..=|
T Consensus 164 k~~~A~~aykKaLeldP~Ne~~K~nL 189 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPDNESYKSNL 189 (304)
T ss_pred cHHHHHHHHHhhhccCCCcHHHHHHH
Confidence 999999998887 7788777665444
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.027 Score=54.80 Aligned_cols=152 Identities=10% Similarity=0.065 Sum_probs=92.6
Q ss_pred HHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHH--HHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHH---H------
Q 037414 280 AYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLY--ACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTC---M------ 348 (577)
Q Consensus 280 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~--a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~---l------ 348 (577)
.+...|+.++|...-....+.. ++ ..+..++. ++-..++.+.|...|++.+ .+.|+-..-.. +
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld--~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le~ 251 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLD--AT-NAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLEV 251 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcc--cc-hhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHHH
Confidence 4445566666666555444331 11 11112222 2233455666666666654 34444221111 1
Q ss_pred ----HHHHHHcCCHHHHHHHHHhC-CCCC-----CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 037414 349 ----VDLLGRAGRLDEALKLIESM-SVEK-----DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVY 418 (577)
Q Consensus 349 ----i~~~~~~g~~~~A~~~~~~m-~~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 418 (577)
..-..+.|++.+|.+.|.+. .+.| +...|........+.|+..+|+.--+.+++++|.-...|..-.+++
T Consensus 252 ~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~ 331 (486)
T KOG0550|consen 252 KKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCH 331 (486)
T ss_pred HHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHH
Confidence 12345678888888888776 4444 4445555556677888888888888888888888777888888888
Q ss_pred hccCChhHHHHHHHHHhhC
Q 037414 419 ANAGRWQDVAKIRDLMTRR 437 (577)
Q Consensus 419 ~~~g~~~~A~~~~~~m~~~ 437 (577)
...++|++|.+-++...+.
T Consensus 332 l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 332 LALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 8888888888888766543
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.11 Score=48.87 Aligned_cols=61 Identities=7% Similarity=-0.068 Sum_probs=40.7
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchH----HHHHHHHhcCCChHHHHHHHHHHHHcC
Q 037414 126 WSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTL----PFVIRACRDRKDIVMGRLIHDIVLKSG 188 (577)
Q Consensus 126 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~----~~ll~~~~~~~~~~~a~~~~~~~~~~g 188 (577)
+-.....+.+.|++++|.+.|+.+... -|+.... -.+..++-+.++++.|...+++.++.-
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 333445566788888888888888774 3433222 234456677888888888888887764
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.071 Score=54.72 Aligned_cols=85 Identities=18% Similarity=0.077 Sum_probs=48.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCCHh-HHH------
Q 037414 307 ITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMS-VEKDEG-LWG------ 378 (577)
Q Consensus 307 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~-~~~------ 378 (577)
.+...+..-+-+...+..|-++|..|-. ...++++....++|++|..+-++.| ..||+. -|.
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~ 817 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAEN 817 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhh
Confidence 3444444445555666677777777621 2356777778888888888888874 334432 111
Q ss_pred ----HHHHHHHhcCCHHHHHHHHHHHH
Q 037414 379 ----ALLGACRIHKNVDLAEMAAKSLL 401 (577)
Q Consensus 379 ----~ll~~~~~~g~~~~a~~~~~~~~ 401 (577)
-.-.+|.+.|+-.+|.++++++.
T Consensus 818 DrFeEAqkAfhkAGr~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 818 DRFEEAQKAFHKAGRQREAVQVLEQLT 844 (1081)
T ss_pred hhHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 12234555555555555555543
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0072 Score=51.57 Aligned_cols=86 Identities=13% Similarity=0.082 Sum_probs=75.3
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHH
Q 037414 351 LLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVA 428 (577)
Q Consensus 351 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 428 (577)
-+-..|++++|..+|+-+ -..| |..-|..|..++...++++.|...+.....++++||.++.....+|...|+.+.|+
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHH
Confidence 345789999999999987 2233 56678888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhh
Q 037414 429 KIRDLMTR 436 (577)
Q Consensus 429 ~~~~~m~~ 436 (577)
..|....+
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 99988775
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.029 Score=47.68 Aligned_cols=98 Identities=5% Similarity=-0.082 Sum_probs=76.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhc
Q 037414 242 LGTAVIDMYAKCGSIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSH 318 (577)
Q Consensus 242 ~~~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 318 (577)
..-.+..-+...|++++|.++|+-+.. .+..-|..|...+-..|++++|+..|....... +-|...+-.+..++..
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHH
Confidence 344556667789999999999998764 345678888888999999999999999988765 3456677778888899
Q ss_pred cCCHHHHHHHHHHhhHhcCCCC
Q 037414 319 TGLVEEGLRLFSSMWDDFAVRP 340 (577)
Q Consensus 319 ~g~~~~a~~~~~~m~~~~~~~p 340 (577)
.|+.+.|++-|+..+...+-.|
T Consensus 116 lG~~~~A~~aF~~Ai~~~~~~~ 137 (157)
T PRK15363 116 CDNVCYAIKALKAVVRICGEVS 137 (157)
T ss_pred cCCHHHHHHHHHHHHHHhccCh
Confidence 9999999999998876544333
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.52 Score=46.03 Aligned_cols=112 Identities=16% Similarity=0.164 Sum_probs=89.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHh
Q 037414 307 ITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRI 386 (577)
Q Consensus 307 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~ 386 (577)
.+.+.-+.-|...|+...|.++-.+. .+ |+...|-..+.+|+..++|++-.++... +..+..|..++.+|..
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F----kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEF----KV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLK 249 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHc----CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHH
Confidence 34555566777789888888775554 55 8999999999999999999999887654 3356889999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHh
Q 037414 387 HKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMT 435 (577)
Q Consensus 387 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 435 (577)
.|+..+|..+..++ .+..-+..|.+.|+|.+|.+.--+.+
T Consensus 250 ~~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 250 YGNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred CCCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 99999999888771 23567889999999999988765443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.38 Score=46.73 Aligned_cols=288 Identities=12% Similarity=0.044 Sum_probs=173.4
Q ss_pred HHHHHHHHH--cCCChHHHHHHHhcCC---CCCcchHHHHHH--HHHhCCChhHHHHHHHHHHHCCCCCCcc--hHHHHH
Q 037414 95 ANKLLYIYA--LHKALTDAHALFNGMK---ERDSVSWSVMVG--GFSKVADFINCFETFREFIRCGMQLDSY--TLPFVI 165 (577)
Q Consensus 95 ~~~li~~~~--~~g~~~~A~~~f~~m~---~~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll 165 (577)
|.+|-..+. -.|+-..|++.-.+-. ..|....--++. +-.-.|+++.|.+-|+.|... |... -+..|.
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLy 161 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLY 161 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHH
Confidence 344444333 3577777777665543 235444444443 344579999999999999873 3222 123344
Q ss_pred HHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcch--hhH
Q 037414 166 RACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDV--ILG 243 (577)
Q Consensus 166 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~--~~~ 243 (577)
-...+.|+.+.|++.-+..-... +.-...+.+++...+..|+++.|+++.+.-.+..++. +++ ..-
T Consensus 162 leAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie-----------~~~aeR~r 229 (531)
T COG3898 162 LEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIE-----------KDVAERSR 229 (531)
T ss_pred HHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhc-----------hhhHHHHH
Confidence 44567899999988888776553 3346788899999999999999999998765422211 111 011
Q ss_pred HHHHHHHHh---cCCHHHHHHHHHhcc--CCChhhHH-HHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHh
Q 037414 244 TAVIDMYAK---CGSIDSAREIFDRMR--QKNVISWS-AMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACS 317 (577)
Q Consensus 244 ~~Li~~~~~---~g~~~~A~~~~~~~~--~~~~~~~~-~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 317 (577)
..|+.+-+. .-+...|...-.+.. .||.+.-. .-..++.+.|+..++-.+++.+-+....|+.- .+-...
T Consensus 230 AvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~a 305 (531)
T COG3898 230 AVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRA 305 (531)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHh
Confidence 112221111 123344444433333 35544332 33567888999999999999998875555532 222344
Q ss_pred ccCCHHHHHHHHHHhhHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHhHHHHHHHHH-HhcCCHHHHH
Q 037414 318 HTGLVEEGLRLFSSMWDDFAVRPD-VKHYTCMVDLLGRAGRLDEALKLIESM-SVEKDEGLWGALLGAC-RIHKNVDLAE 394 (577)
Q Consensus 318 ~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~-~~~g~~~~a~ 394 (577)
+.|+. +..-++...+-..++|+ .+..-.+..+-...|++..|..--+.. ...|....|..|...- ...||-.++.
T Consensus 306 r~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR 383 (531)
T COG3898 306 RSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVR 383 (531)
T ss_pred cCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHH
Confidence 55543 22222322222244554 456666777777888888777655554 4467788887777764 4458888888
Q ss_pred HHHHHHHhc
Q 037414 395 MAAKSLLER 403 (577)
Q Consensus 395 ~~~~~~~~~ 403 (577)
..+-+.++.
T Consensus 384 ~wlAqav~A 392 (531)
T COG3898 384 QWLAQAVKA 392 (531)
T ss_pred HHHHHHhcC
Confidence 888777653
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0023 Score=46.62 Aligned_cols=58 Identities=17% Similarity=0.269 Sum_probs=28.4
Q ss_pred ccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHhHH
Q 037414 318 HTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEKDEGLW 377 (577)
Q Consensus 318 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~ 377 (577)
..|++++|.++|+.+.+. .+-+...+..+...|.+.|++++|.++++++ ...|+...|
T Consensus 3 ~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 61 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEY 61 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHH
T ss_pred hccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHH
Confidence 345555555555555432 1123444445555555555555555555555 333443333
|
... |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.04 Score=47.60 Aligned_cols=123 Identities=13% Similarity=0.108 Sum_probs=52.2
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCC---CHhHH
Q 037414 303 LPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAV-RPDVKHYTCMVDLLGRAGRLDEALKLIESMS-VEK---DEGLW 377 (577)
Q Consensus 303 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p---~~~~~ 377 (577)
.|+...-..|..+....|+..+|...|++... |+ .-|....-.+.++....+++.+|...++.+. ..| .+.+.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 34444444444555555555555555554432 22 2233344444444444555555555544441 011 11122
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHH
Q 037414 378 GALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVA 428 (577)
Q Consensus 378 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 428 (577)
-.+.+.+...|....|+..|+.+....|. +..-......+.++|+..++.
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHH
Confidence 23334444555555555555555444433 122222333344444444443
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.051 Score=49.64 Aligned_cols=132 Identities=13% Similarity=0.093 Sum_probs=73.0
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchh
Q 037414 162 PFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVI 241 (577)
Q Consensus 162 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~ 241 (577)
..++..+...+.+.-....+..+++...+.++.....|..+-.+.|+.+.|...|++..+.+.-. .+..-+..
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL-------~~~q~~~~ 253 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKL-------DGLQGKIM 253 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhh-------hccchhHH
Confidence 34455555556666666666666666555566666666666667777777766666543211110 11122222
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhC
Q 037414 242 LGTAVIDMYAKCGSIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSS 300 (577)
Q Consensus 242 ~~~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 300 (577)
+.......|.-.+++..|...|.++.. .|++.-|.-.-+..-.|+...|++.++.|...
T Consensus 254 V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 254 VLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred HHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 333344455556666677777766654 33444444344444456777777777777664
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.014 Score=55.21 Aligned_cols=93 Identities=13% Similarity=0.123 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH----hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---chhHHHHH
Q 037414 344 HYTCMVDLLGRAGRLDEALKLIESM-SVEKDE----GLWGALLGACRIHKNVDLAEMAAKSLLERQPQN---PGHYVLLS 415 (577)
Q Consensus 344 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~ 415 (577)
.|...+..+.+.|++++|...|+.+ ...|+. ..+--+...+...|++++|...|+.+.+..|++ +.++..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 3444444444455666666555555 222322 244445555566666666666666666655543 23344445
Q ss_pred HHHhccCChhHHHHHHHHHhh
Q 037414 416 NVYANAGRWQDVAKIRDLMTR 436 (577)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~m~~ 436 (577)
.+|...|++++|.++++...+
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 556666666666666665554
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.27 Score=50.75 Aligned_cols=101 Identities=18% Similarity=0.150 Sum_probs=56.1
Q ss_pred HHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHh
Q 037414 256 IDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDD 335 (577)
Q Consensus 256 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 335 (577)
.|-+.++-+++...+..+...+...+-+...+.-|.++|.+|-.. ..++......+++++|..+-+..-
T Consensus 732 ~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hP-- 800 (1081)
T KOG1538|consen 732 VDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHP-- 800 (1081)
T ss_pred HHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCc--
Confidence 334444444444444444555555555566666777777766432 245556666777777776666553
Q ss_pred cCCCCCHHH-----------HHHHHHHHHHcCCHHHHHHHHHhC
Q 037414 336 FAVRPDVKH-----------YTCMVDLLGRAGRLDEALKLIESM 368 (577)
Q Consensus 336 ~~~~p~~~~-----------~~~li~~~~~~g~~~~A~~~~~~m 368 (577)
.+.|++.. +.-.-++|.++|+-.||.++++++
T Consensus 801 -e~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQL 843 (1081)
T KOG1538|consen 801 -EFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQL 843 (1081)
T ss_pred -cccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHh
Confidence 33444321 112224566777777777777776
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.034 Score=48.98 Aligned_cols=62 Identities=10% Similarity=0.080 Sum_probs=35.3
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhh
Q 037414 272 ISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPN--RITFVSLLYACSHTGLVEEGLRLFSSMW 333 (577)
Q Consensus 272 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 333 (577)
..|..+...+...|++++|+..|++.......|. ..++..+...+...|+.++|...++..+
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al 99 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQAL 99 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455555666666666666666666654322221 2345555566666666666666666654
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0058 Score=44.58 Aligned_cols=65 Identities=14% Similarity=0.143 Sum_probs=50.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCC
Q 037414 341 DVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHK-NVDLAEMAAKSLLERQP 405 (577)
Q Consensus 341 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p 405 (577)
+...|..+...+...|++++|+..|++. ...| +...|..+..++...| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3566777778888888888888888876 4445 4457888888888888 68899999988888876
|
... |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.078 Score=48.50 Aligned_cols=226 Identities=9% Similarity=0.031 Sum_probs=137.5
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHhcCC---CC----------------CcchHHH-HHHH--HHhCCChhHHHHHHHHHH
Q 037414 93 IVANKLLYIYALHKALTDAHALFNGMK---ER----------------DSVSWSV-MVGG--FSKVADFINCFETFREFI 150 (577)
Q Consensus 93 ~~~~~li~~~~~~g~~~~A~~~f~~m~---~~----------------~~~~~~~-li~~--~~~~g~~~~A~~~~~~m~ 150 (577)
..|+--+.++++....++|..-++... .| +.+.|.. +|.+ ....|.+.+.+.-+..++
T Consensus 70 q~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~L~ 149 (366)
T KOG2796|consen 70 QLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHKLK 149 (366)
T ss_pred HHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 456666777888888877765554432 22 2233322 2222 233566666555444443
Q ss_pred HCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHH
Q 037414 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM 230 (577)
Q Consensus 151 ~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 230 (577)
.. ..-.+.........+.-...+++-. ..+-+.++..+.-.|.+.-...++.+..+++..
T Consensus 150 ~~--------V~~ii~~~e~~~~~ESsv~lW~KRl-------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e----- 209 (366)
T KOG2796|consen 150 TV--------VSKILANLEQGLAEESSIRLWRKRL-------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPE----- 209 (366)
T ss_pred HH--------HHHHHHHHHhccchhhHHHHHHHHH-------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCc-----
Confidence 21 1122333322223344455555432 245667777777778888788888877766543
Q ss_pred HhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC----CChhhHHH-----HHHHHHHcCChHHHHHHHHHhhhCC
Q 037414 231 IGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ----KNVISWSA-----MIAAYGYHGQGKKALDLFPMMLSSR 301 (577)
Q Consensus 231 i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~-----li~~~~~~g~~~~A~~l~~~m~~~g 301 (577)
.++.....|..+-.+.||.+.|...|++..+ -|..+.+. +...|.-.+++..|...|.+.....
T Consensus 210 -------~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D 282 (366)
T KOG2796|consen 210 -------QEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD 282 (366)
T ss_pred -------ccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccC
Confidence 3667778899999999999999999996542 34333333 3445666778889999998887653
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHH
Q 037414 302 VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMV 349 (577)
Q Consensus 302 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 349 (577)
.-|.+..|.-.-...-.|+...|.+..+.|+ ...|...+-++++
T Consensus 283 -~~~~~a~NnKALcllYlg~l~DAiK~~e~~~---~~~P~~~l~es~~ 326 (366)
T KOG2796|consen 283 -PRNAVANNNKALCLLYLGKLKDALKQLEAMV---QQDPRHYLHESVL 326 (366)
T ss_pred -CCchhhhchHHHHHHHHHHHHHHHHHHHHHh---ccCCccchhhhHH
Confidence 2244444433333445689999999999997 3567665555443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.049 Score=44.55 Aligned_cols=92 Identities=20% Similarity=0.244 Sum_probs=61.5
Q ss_pred HHHHHHHcCChHHHHHHHHHhhhCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-CHHHHHHHHHHHH
Q 037414 277 MIAAYGYHGQGKKALDLFPMMLSSRVLPN--RITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP-DVKHYTCMVDLLG 353 (577)
Q Consensus 277 li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~ 353 (577)
+..++-..|+.++|+.+|++....|.... ...+..+.+++...|++++|..+++.....+.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 45667778888888888888888776654 23566677788888888888888888875432111 1222223334667
Q ss_pred HcCCHHHHHHHHHhC
Q 037414 354 RAGRLDEALKLIESM 368 (577)
Q Consensus 354 ~~g~~~~A~~~~~~m 368 (577)
..|+.++|.+.+-..
T Consensus 87 ~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 87 NLGRPKEALEWLLEA 101 (120)
T ss_pred HCCCHHHHHHHHHHH
Confidence 788888888776543
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.03 Score=45.76 Aligned_cols=81 Identities=22% Similarity=0.155 Sum_probs=38.8
Q ss_pred HHHcCCHHHHHHHHHhC---CCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CchhHHHHHHHHhccCC
Q 037414 352 LGRAGRLDEALKLIESM---SVEKD--EGLWGALLGACRIHKNVDLAEMAAKSLLERQPQ---NPGHYVLLSNVYANAGR 423 (577)
Q Consensus 352 ~~~~g~~~~A~~~~~~m---~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~ 423 (577)
+-..|+.++|..+|++. +.... ...+-.+.+.+...|++++|..++++..+..|+ +......+..++...|+
T Consensus 11 ~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr 90 (120)
T PF12688_consen 11 HDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGR 90 (120)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCC
Confidence 34445555555555543 11111 113334444555555555555555555555444 33334444445555555
Q ss_pred hhHHHHHHH
Q 037414 424 WQDVAKIRD 432 (577)
Q Consensus 424 ~~~A~~~~~ 432 (577)
.++|.+.+-
T Consensus 91 ~~eAl~~~l 99 (120)
T PF12688_consen 91 PKEALEWLL 99 (120)
T ss_pred HHHHHHHHH
Confidence 555555543
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0016 Score=39.74 Aligned_cols=33 Identities=30% Similarity=0.534 Sum_probs=30.6
Q ss_pred HHHHHhcCCCCchhHHHHHHHHhccCChhHHHH
Q 037414 397 AKSLLERQPQNPGHYVLLSNVYANAGRWQDVAK 429 (577)
Q Consensus 397 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 429 (577)
++++++.+|+++.+|..|..+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 678899999999999999999999999999863
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.4 Score=41.72 Aligned_cols=99 Identities=19% Similarity=0.299 Sum_probs=50.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC---CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CchhHH
Q 037414 338 VRPDVKHYTCMVDLLGRAGRLDEALKLIESM---SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQ--NPGHYV 412 (577)
Q Consensus 338 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~ 412 (577)
+.|++..--.|..++.+.|+..||...|++. ...-|....-.+.++....++...|...++++.+.+|. .|....
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 3455555555555555555555555555554 12234445555555555555555555555555555433 334444
Q ss_pred HHHHHHhccCChhHHHHHHHHHhh
Q 037414 413 LLSNVYANAGRWQDVAKIRDLMTR 436 (577)
Q Consensus 413 ~l~~~~~~~g~~~~A~~~~~~m~~ 436 (577)
.+.+.|...|++++|+..|+...+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHH
Confidence 555555555555555555554443
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.16 Score=50.18 Aligned_cols=159 Identities=19% Similarity=0.158 Sum_probs=93.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccCC---Chh----hHHHHHHHHHH---cCChHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 037414 245 AVIDMYAKCGSIDSAREIFDRMRQK---NVI----SWSAMIAAYGY---HGQGKKALDLFPMMLSSRVLPNRITFVSLLY 314 (577)
Q Consensus 245 ~Li~~~~~~g~~~~A~~~~~~~~~~---~~~----~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 314 (577)
.|+-.|....+++...++++.+... +.. .--...-++.+ .|+.++|++++..+......++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4555699999999999999999763 111 11123445556 7899999999999776667788888877666
Q ss_pred HHhc---------cCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHH----HHHHHH---HhC----C-C--C
Q 037414 315 ACSH---------TGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLD----EALKLI---ESM----S-V--E 371 (577)
Q Consensus 315 a~~~---------~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~----~A~~~~---~~m----~-~--~ 371 (577)
.|-. ...+++|...|.+.- .+.|+..+---++..+...|... +..++- ..+ + . .
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 5522 223566666666443 44555433333333333334311 222222 111 1 1 1
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 037414 372 KDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQ 406 (577)
Q Consensus 372 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 406 (577)
.|-.-+.+++.++.-.|+.+.|.+..+++.++.|+
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 23334456666666777777777777777766554
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.93 Score=47.90 Aligned_cols=117 Identities=15% Similarity=0.072 Sum_probs=89.4
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHH
Q 037414 301 RVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGAL 380 (577)
Q Consensus 301 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l 380 (577)
|......|.+--+.-+...|+..+|.++-.+.. -||...|-.-+.+++..+++++-+++-+++. .+.-|.-+
T Consensus 679 ~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PF 750 (829)
T KOG2280|consen 679 GGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPF 750 (829)
T ss_pred ccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhH
Confidence 334444556666667778899999988877662 4888888888999999999999988888764 25668888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHH
Q 037414 381 LGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDL 433 (577)
Q Consensus 381 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 433 (577)
..+|.+.|+.++|..++-+.-. +.-.+.+|.+.|++.+|.++--+
T Consensus 751 Ve~c~~~~n~~EA~KYiprv~~--------l~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 751 VEACLKQGNKDEAKKYIPRVGG--------LQEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHHHhcccHHHHhhhhhccCC--------hHHHHHHHHHhccHHHHHHHHHH
Confidence 8999999999999888765422 22578889999999999887544
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.86 Score=44.53 Aligned_cols=85 Identities=22% Similarity=0.216 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCC
Q 037414 344 HYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGR 423 (577)
Q Consensus 344 ~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 423 (577)
+.+.-|.-+...|+...|.++..+..+ ||...|...+.+++..+++++-..+... ..+|..|...+.+|.+.|+
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv-~dkrfw~lki~aLa~~~~w~eL~~fa~s-----kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKV-PDKRFWWLKIKALAENKDWDELEKFAKS-----KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC-----CCCCCChHHHHHHHHHCCC
Confidence 344445666788999999999999984 8999999999999999999988876542 3456789999999999999
Q ss_pred hhHHHHHHHHH
Q 037414 424 WQDVAKIRDLM 434 (577)
Q Consensus 424 ~~~A~~~~~~m 434 (577)
..+|.++...+
T Consensus 253 ~~eA~~yI~k~ 263 (319)
T PF04840_consen 253 KKEASKYIPKI 263 (319)
T ss_pred HHHHHHHHHhC
Confidence 99999998774
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.13 Score=41.79 Aligned_cols=139 Identities=15% Similarity=0.200 Sum_probs=84.5
Q ss_pred HcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 037414 283 YHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEAL 362 (577)
Q Consensus 283 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 362 (577)
-.|..++..++..+.... .+..-++.++.-....-+-+-..+.++.+-+-+ | ...+|++....
T Consensus 14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiF----D----------is~C~NlKrVi 76 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIF----D----------ISKCGNLKRVI 76 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS---------------GGG-S-THHHH
T ss_pred HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhc----C----------chhhcchHHHH
Confidence 356666666666666543 244555656555444444444555555442221 1 12456666666
Q ss_pred HHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCCCc
Q 037414 363 KLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLK 440 (577)
Q Consensus 363 ~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 440 (577)
..+-.++ .+.......+......|+-+.-.++...+.+.+..+|....-+.++|.+.|+..++.+++.+.-++|++
T Consensus 77 ~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 77 ECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 6665554 244556667788899999999999999998877778899999999999999999999999999999974
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.30 E-value=1.4 Score=44.01 Aligned_cols=72 Identities=17% Similarity=0.203 Sum_probs=55.9
Q ss_pred HHHHhCCCCC----CHhHHHHHHHH--HHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHh
Q 037414 363 KLIESMSVEK----DEGLWGALLGA--CRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMT 435 (577)
Q Consensus 363 ~~~~~m~~~p----~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 435 (577)
.++++.++.| +...-|.|..| +..+|++.++...-.-+.+..| ++.+|..+.-+.....++++|..++..+.
T Consensus 445 ~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 445 DFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 3445556555 33345555555 5678999999988888888888 78999999999999999999999997764
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.018 Score=42.43 Aligned_cols=62 Identities=19% Similarity=0.242 Sum_probs=50.8
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhH
Q 037414 350 DLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHY 411 (577)
Q Consensus 350 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 411 (577)
..|.+.+++++|.++++++ ...| +...|......+...|++++|...+++.++..|+++...
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 4678889999999999888 4555 445777788889999999999999999999999876543
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.011 Score=38.71 Aligned_cols=42 Identities=29% Similarity=0.355 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 037414 375 GLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSN 416 (577)
Q Consensus 375 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 416 (577)
.+|..+...+...|++++|+++++++++..|+++..+..|..
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 357788899999999999999999999999999988877653
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.28 E-value=1.2 Score=43.36 Aligned_cols=285 Identities=16% Similarity=0.146 Sum_probs=185.8
Q ss_pred hHHHHHHHHHh--CCChhHHHHHHHHHHHCCCCCCcchHHHHHHHH--hcCCChHHHHHHHHHHHHcCCCCcHH--HHHH
Q 037414 125 SWSVMVGGFSK--VADFINCFETFREFIRCGMQLDSYTLPFVIRAC--RDRKDIVMGRLIHDIVLKSGLDIDQF--VCAA 198 (577)
Q Consensus 125 ~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~--~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~ 198 (577)
.|.+|-.++.. .|+-..|.++-.+-.+. +.-|...+..|+.+- .-.|+.+.|++-|+.|... |... -...
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRg 159 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRG 159 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHH
Confidence 45555555544 56777777766555433 556777777787764 3469999999999999753 3222 2233
Q ss_pred HHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC-----CChh-
Q 037414 199 LVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ-----KNVI- 272 (577)
Q Consensus 199 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~-----~~~~- 272 (577)
|.-.--+.|..+.|...-+..-+.-+. -.....+++...+..|+++.|+++.+.-.. +++.
T Consensus 160 LyleAqr~GareaAr~yAe~Aa~~Ap~-------------l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~ae 226 (531)
T COG3898 160 LYLEAQRLGAREAARHYAERAAEKAPQ-------------LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAE 226 (531)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhhccC-------------CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHH
Confidence 333345678888888776655432111 234556789999999999999999987653 4442
Q ss_pred -hHHHHHHHHHH---cCChHHHHHHHHHhhhCCCCCCHHH-HHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHH
Q 037414 273 -SWSAMIAAYGY---HGQGKKALDLFPMMLSSRVLPNRIT-FVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTC 347 (577)
Q Consensus 273 -~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ 347 (577)
.-..|+.+-+. ..+...|...-.+..+ +.||..- -..-..++.+.|++.++-.+++.+-+ ..|....+..
T Consensus 227 R~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK---~ePHP~ia~l 301 (531)
T COG3898 227 RSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWK---AEPHPDIALL 301 (531)
T ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHh---cCCChHHHHH
Confidence 22233333222 2345566655554443 5666542 23445688999999999999999974 4566665544
Q ss_pred HHHHHHHcCCHHH--HHH--HHHhCCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhc-c
Q 037414 348 MVDLLGRAGRLDE--ALK--LIESMSVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYAN-A 421 (577)
Q Consensus 348 li~~~~~~g~~~~--A~~--~~~~m~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-~ 421 (577)
.+ +.+.|+... ..+ -++.| +| +..+.-.+..+....|++..|..-.+.+....|.. ..|..|.++-.. .
T Consensus 302 Y~--~ar~gdta~dRlkRa~~L~sl--k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~~lLlAdIeeAet 376 (531)
T COG3898 302 YV--RARSGDTALDRLKRAKKLESL--KPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE-SAYLLLADIEEAET 376 (531)
T ss_pred HH--HhcCCCcHHHHHHHHHHHHhc--CccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh-hHHHHHHHHHhhcc
Confidence 44 456665322 211 23333 45 45577778888889999999999998888888875 578888888654 4
Q ss_pred CChhHHHHHHHHHhh
Q 037414 422 GRWQDVAKIRDLMTR 436 (577)
Q Consensus 422 g~~~~A~~~~~~m~~ 436 (577)
|+-.++...+.+-.+
T Consensus 377 GDqg~vR~wlAqav~ 391 (531)
T COG3898 377 GDQGKVRQWLAQAVK 391 (531)
T ss_pred CchHHHHHHHHHHhc
Confidence 998888888766554
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.041 Score=53.39 Aligned_cols=128 Identities=12% Similarity=0.070 Sum_probs=92.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhh---HhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhC-------CC-CCCHh
Q 037414 308 TFVSLLYACSHTGLVEEGLRLFSSMW---DDFAVRP-DVKHYTCMVDLLGRAGRLDEALKLIESM-------SV-EKDEG 375 (577)
Q Consensus 308 t~~~ll~a~~~~g~~~~a~~~~~~m~---~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~-~p~~~ 375 (577)
.|..|-..|.-.|+++.|+..++.-+ +++|-.. ....+.-+..++.-.|+++.|.+.|... +- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 45556666666788999987766432 3444332 2356677778888889999999888764 21 22445
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh----cC--CCCchhHHHHHHHHhccCChhHHHHHHHHHh
Q 037414 376 LWGALLGACRIHKNVDLAEMAAKSLLE----RQ--PQNPGHYVLLSNVYANAGRWQDVAKIRDLMT 435 (577)
Q Consensus 376 ~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 435 (577)
+.-+|.++|....+++.|+.++.+-+. ++ .....++.+|.++|...|..++|+.+.+.-.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 777888999999999999998877543 22 2345789999999999999999988876544
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.33 Score=47.51 Aligned_cols=154 Identities=16% Similarity=0.124 Sum_probs=105.7
Q ss_pred HHHHHhcCCHHHHHHHHHhccCCChh-hHHHHHHH--HHHcCChHHHHHHHHHhhhCCCCCCHHHHHHH---HHH-----
Q 037414 247 IDMYAKCGSIDSAREIFDRMRQKNVI-SWSAMIAA--YGYHGQGKKALDLFPMMLSSRVLPNRITFVSL---LYA----- 315 (577)
Q Consensus 247 i~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~li~~--~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l---l~a----- 315 (577)
..++.-.|+.++|..+--.+.+-|.. .+...+.+ +--.++.+.|...|++.+.. .||...-... ...
T Consensus 176 a~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k 253 (486)
T KOG0550|consen 176 AECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKK 253 (486)
T ss_pred hhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHH
Confidence 45677789999999888777765443 33333443 33477889999999988764 5655433222 111
Q ss_pred -----HhccCCHHHHHHHHHHhhHhcCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHh-HHHHHHH--
Q 037414 316 -----CSHTGLVEEGLRLFSSMWDDFAVRPD-----VKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEG-LWGALLG-- 382 (577)
Q Consensus 316 -----~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~-~~~~ll~-- 382 (577)
..+.|.+..|.+.+.+.+ ++.|+ ...|.-......+.|++.+|+.--++.- .-|.. ++..+.+
T Consensus 254 ~~gN~~fk~G~y~~A~E~Yteal---~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al-~iD~syikall~ra~ 329 (486)
T KOG0550|consen 254 ERGNDAFKNGNYRKAYECYTEAL---NIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL-KIDSSYIKALLRRAN 329 (486)
T ss_pred hhhhhHhhccchhHHHHHHHHhh---cCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh-hcCHHHHHHHHHHHH
Confidence 246789999999999887 55554 5566666677889999999998877662 23443 3333333
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCC
Q 037414 383 ACRIHKNVDLAEMAAKSLLERQPQ 406 (577)
Q Consensus 383 ~~~~~g~~~~a~~~~~~~~~~~p~ 406 (577)
++...+++++|.+-+++..+....
T Consensus 330 c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 330 CHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccc
Confidence 356778999999999999887644
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.063 Score=44.37 Aligned_cols=96 Identities=14% Similarity=0.199 Sum_probs=57.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcc
Q 037414 240 VILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHT 319 (577)
Q Consensus 240 ~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 319 (577)
..++.+++-++++.|+++....+.+..-..|+. +-...+. --......|+..+..+++.+|+..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~-------~~~~~~~---------~~~~spl~Pt~~lL~AIv~sf~~n 65 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVN-------GKKKEGD---------YPPSSPLYPTSRLLIAIVHSFGYN 65 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCC-------CccccCc---------cCCCCCCCCCHHHHHHHHHHHHhc
Confidence 445556666666666666666665544321110 0000000 112234667777777888888888
Q ss_pred CCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHH
Q 037414 320 GLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDL 351 (577)
Q Consensus 320 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 351 (577)
|++..|.++.+...+.|+++-+...|..|++-
T Consensus 66 ~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 66 GDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred ccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 88888888888777777777777777777753
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.12 Score=49.01 Aligned_cols=102 Identities=9% Similarity=0.085 Sum_probs=69.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HhHHHHHH
Q 037414 308 TFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP-DVKHYTCMVDLLGRAGRLDEALKLIESM-SVEKD----EGLWGALL 381 (577)
Q Consensus 308 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll 381 (577)
.|...+......|++++|...|+.+++.+.-.+ ....+..+...|...|++++|...|+.+ ...|+ ...+-.+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 444444444556788888888888876532111 0245566777888888888888888877 22232 33555556
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 037414 382 GACRIHKNVDLAEMAAKSLLERQPQNPG 409 (577)
Q Consensus 382 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 409 (577)
..+...|+.+.|..+++++++..|++..
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 6677889999999999999999888653
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.41 Score=43.62 Aligned_cols=167 Identities=13% Similarity=0.105 Sum_probs=93.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhccC--CC----hhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcc
Q 037414 246 VIDMYAKCGSIDSAREIFDRMRQ--KN----VISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHT 319 (577)
Q Consensus 246 Li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 319 (577)
....+...|++++|.+.|+.+.. |+ ....-.++.++-+.|++++|...+++..+.-..-...-+...+.+.+..
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence 44556677888888888888764 32 1234556777888888888888888876642111111222222222211
Q ss_pred -------------CCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHh
Q 037414 320 -------------GLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRI 386 (577)
Q Consensus 320 -------------g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~ 386 (577)
+...+|...| ..++.-|=......+|...+..+...- ..---.+..-|.+
T Consensus 91 ~~~~~~~~~~~D~~~~~~A~~~~----------------~~li~~yP~S~y~~~A~~~l~~l~~~l-a~~e~~ia~~Y~~ 153 (203)
T PF13525_consen 91 KQIPGILRSDRDQTSTRKAIEEF----------------EELIKRYPNSEYAEEAKKRLAELRNRL-AEHELYIARFYYK 153 (203)
T ss_dssp HHHHHHH-TT---HHHHHHHHHH----------------HHHHHH-TTSTTHHHHHHHHHHHHHHH-HHHHHHHHHHHHC
T ss_pred HhCccchhcccChHHHHHHHHHH----------------HHHHHHCcCchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 1112233333 333444444444555554444431000 0011124456889
Q ss_pred cCCHHHHHHHHHHHHhcCCCCc---hhHHHHHHHHhccCChhHHHH
Q 037414 387 HKNVDLAEMAAKSLLERQPQNP---GHYVLLSNVYANAGRWQDVAK 429 (577)
Q Consensus 387 ~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~ 429 (577)
.|.+..|..-++.+++..|+.+ .+...++.+|.+.|..+.|..
T Consensus 154 ~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 154 RGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp TT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred cccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 9999999999999999999865 456778889999998885543
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.031 Score=55.80 Aligned_cols=96 Identities=10% Similarity=0.051 Sum_probs=56.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHh----HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 037414 341 DVKHYTCMVDLLGRAGRLDEALKLIESM-SVEKDEG----LWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLS 415 (577)
Q Consensus 341 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 415 (577)
+...++.+..+|.+.|++++|...|++. .+.|+.. +|..+..+|...|+.++|+..++++++..+. .|..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~---~f~~i~ 150 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL---KFSTIL 150 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch---hHHHHH
Confidence 3556666777777777777777777664 5556532 4677777777777777777777777775321 121111
Q ss_pred H--HHhccCChhHHHHHHHHHhhCCC
Q 037414 416 N--VYANAGRWQDVAKIRDLMTRRRL 439 (577)
Q Consensus 416 ~--~~~~~g~~~~A~~~~~~m~~~g~ 439 (577)
. .+....+.++..++++...+-|.
T Consensus 151 ~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 151 NDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred hCcchhhhcccHHHHHHHHHHHHhCC
Confidence 1 11122333456666666666554
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.05 Score=50.21 Aligned_cols=109 Identities=15% Similarity=0.166 Sum_probs=85.4
Q ss_pred HHHHHHhcc--CCChhhHHHHHHHHHHc-----CChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccC-----------
Q 037414 259 AREIFDRMR--QKNVISWSAMIAAYGYH-----GQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTG----------- 320 (577)
Q Consensus 259 A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g----------- 320 (577)
.++.|.... ++|-.+|-+++..|..+ ++.+-....++.|.+.|+.-|..+|+.||..+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 355677776 57888999999888764 567778888999999999999999999998875542
Q ss_pred -----CHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHhC
Q 037414 321 -----LVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRL-DEALKLIESM 368 (577)
Q Consensus 321 -----~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m 368 (577)
+-+=++.++++| +.+|+.||.++-..|+.++++.+.. .+..++.--|
T Consensus 133 ~HYP~QQ~C~I~vLeqM-E~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQM-EWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred hhCchhhhHHHHHHHHH-HHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 224578999999 6789999999999999999998864 3334443333
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.04 Score=47.23 Aligned_cols=61 Identities=20% Similarity=0.181 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhh
Q 037414 376 LWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTR 436 (577)
Q Consensus 376 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 436 (577)
....++..+...|+++.|....+.++..+|-+...|..++.+|...|+..+|.++++.+.+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 5566777788999999999999999999999999999999999999999999999988753
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.088 Score=43.50 Aligned_cols=62 Identities=21% Similarity=0.403 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhh--------------HhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 037414 306 RITFVSLLYACSHTGLVEEGLRLFSSMW--------------DDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIES 367 (577)
Q Consensus 306 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~--------------~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 367 (577)
..++..++.++++.|+++....+.+..- ....+.|+..+..+++.+|+..|++..|.++++.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~ 77 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDF 77 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 4455566666666666666655554331 1123334444444444444444444444444443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.59 Score=42.55 Aligned_cols=57 Identities=11% Similarity=0.001 Sum_probs=28.3
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCC--CcchHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 037414 131 GGFSKVADFINCFETFREFIRCGMQL--DSYTLPFVIRACRDRKDIVMGRLIHDIVLKS 187 (577)
Q Consensus 131 ~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 187 (577)
..+.+.|++.+|.+.|+.+...-... -....-.+..++-+.|+++.|...++..++.
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34555666666666666666531110 0112334444555666666666666665554
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.12 Score=50.57 Aligned_cols=64 Identities=13% Similarity=-0.016 Sum_probs=57.4
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhC
Q 037414 374 EGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRR 437 (577)
Q Consensus 374 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 437 (577)
..++..+..++.+.+++..|++...++++.+|+|..+..--..+|...|+++.|+..|+++.+.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 3466777788899999999999999999999999999999999999999999999999998753
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.52 E-value=1.9 Score=39.25 Aligned_cols=197 Identities=19% Similarity=0.145 Sum_probs=145.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhccC-----CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 037414 240 VILGTAVIDMYAKCGSIDSAREIFDRMRQ-----KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLY 314 (577)
Q Consensus 240 ~~~~~~Li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 314 (577)
...+......+...+++..+...+..... .....+......+...++..++...+.........+.. .......
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDL-AEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcch-HHHHHHH
Confidence 34566778888889999999888887642 34456777777888888899999999998875444422 2222223
Q ss_pred -HHhccCCHHHHHHHHHHhhHhcCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC--HhHHHHHHHHHHhcC
Q 037414 315 -ACSHTGLVEEGLRLFSSMWDDFAV--RPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEKD--EGLWGALLGACRIHK 388 (577)
Q Consensus 315 -a~~~~g~~~~a~~~~~~m~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~--~~~~~~ll~~~~~~g 388 (577)
.+...|+.+.+...+..... ... ......+......+...++.++|...+.+. ...++ ...+..+...+...+
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 138 GALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence 78889999999999998853 111 123444445555577889999999999887 33344 567888888889999
Q ss_pred CHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCC
Q 037414 389 NVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 389 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
+.+.+...+....+..|.....+..+...+...+.++++...+....+..
T Consensus 217 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 217 KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999988865666677777777778999998888776543
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.028 Score=42.11 Aligned_cols=57 Identities=14% Similarity=0.234 Sum_probs=30.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhccC---------CC-hhhHHHHHHHHHHcCChHHHHHHHHHh
Q 037414 241 ILGTAVIDMYAKCGSIDSAREIFDRMRQ---------KN-VISWSAMIAAYGYHGQGKKALDLFPMM 297 (577)
Q Consensus 241 ~~~~~Li~~~~~~g~~~~A~~~~~~~~~---------~~-~~~~~~li~~~~~~g~~~~A~~l~~~m 297 (577)
.+++.+...|...|++++|+..|++..+ ++ ..+++.+...|...|++++|++.+++.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3556666666667776666666665432 11 234444555555555555555555543
|
... |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.83 Score=45.18 Aligned_cols=71 Identities=14% Similarity=0.073 Sum_probs=38.3
Q ss_pred HHHHHHcCCChHHHHHHHhcCCCC---C----cchHHHHHHHHHh---CCChhHHHHHHHHHHHCCCCCCcchHHHHHHH
Q 037414 98 LLYIYALHKALTDAHALFNGMKER---D----SVSWSVMVGGFSK---VADFINCFETFREFIRCGMQLDSYTLPFVIRA 167 (577)
Q Consensus 98 li~~~~~~g~~~~A~~~f~~m~~~---~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 167 (577)
|+-.|-...+++...++.+.+... + ...--...-++-+ .|+.++|++++..+....-.++..||..+.+.
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 333466666677777777666543 1 1111122223444 56677777777665554455566666655554
Q ss_pred H
Q 037414 168 C 168 (577)
Q Consensus 168 ~ 168 (577)
|
T Consensus 227 y 227 (374)
T PF13281_consen 227 Y 227 (374)
T ss_pred H
Confidence 3
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.031 Score=41.83 Aligned_cols=60 Identities=13% Similarity=0.087 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCC---CchhHHHHHHHHhccCChhHHHHHHHHHh
Q 037414 376 LWGALLGACRIHKNVDLAEMAAKSLLER----QPQ---NPGHYVLLSNVYANAGRWQDVAKIRDLMT 435 (577)
Q Consensus 376 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 435 (577)
+++.+...+...|++++|+..+++.++. +++ ...++..++.+|...|++++|.+.+++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6677777788888888888888877654 222 23567788888888888888888887654
|
... |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.33 Score=41.47 Aligned_cols=53 Identities=23% Similarity=0.217 Sum_probs=23.6
Q ss_pred HHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 037414 279 AAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSM 332 (577)
Q Consensus 279 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 332 (577)
..+...|++++|..+.+.+... -+.|...+..++.++...|+..+|.+.|+.+
T Consensus 70 ~~~~~~~~~~~a~~~~~~~l~~-dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 70 EALLEAGDYEEALRLLQRALAL-DPYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHH-STT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 3344455555555555554443 1233444445555555555555555444433
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.1 Score=50.85 Aligned_cols=259 Identities=13% Similarity=0.051 Sum_probs=141.3
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCc----chHHHHHHHHhcCCChHHHHHHHHHHH--Hc--CCC-CcHHHHHHHHHH
Q 037414 132 GFSKVADFINCFETFREFIRCGMQLDS----YTLPFVIRACRDRKDIVMGRLIHDIVL--KS--GLD-IDQFVCAALVDM 202 (577)
Q Consensus 132 ~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~--~~--g~~-~~~~~~~~li~~ 202 (577)
-+|+.|+....+.+|+..++.|-. |. ..|..|-++|.-.+++++|.+.|..=+ .. |-. -.......|-+.
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 467788888888888888777643 32 234455556666677777777654211 10 100 011122223333
Q ss_pred HHhCCCHHHHHHHHhh-CC---C-CChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCC--------------------HH
Q 037414 203 YAKCKVIDDARQLFDQ-MP---T-RDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGS--------------------ID 257 (577)
Q Consensus 203 ~~~~g~~~~A~~~~~~-m~---~-~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~--------------------~~ 257 (577)
+--.|.+++|...-.+ +. + .|.+. ....+-.|.+.|-..|+ ++
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~------------e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~ 172 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVL------------ESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALE 172 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHh------------hhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHH
Confidence 3344555555432111 10 0 01010 11222334444433321 23
Q ss_pred HHHHHHHhccC---------CChhhHHHHHHHHHHcCChHHHHHHHHHhh----hCCCCC-CHHHHHHHHHHHhccCCHH
Q 037414 258 SAREIFDRMRQ---------KNVISWSAMIAAYGYHGQGKKALDLFPMML----SSRVLP-NRITFVSLLYACSHTGLVE 323 (577)
Q Consensus 258 ~A~~~~~~~~~---------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~----~~g~~p-~~~t~~~ll~a~~~~g~~~ 323 (577)
.|.++|.+=.+ .--..|..+...|.-.|+++.|+..-+.-. +.|-+. ....+..+..++.-.|+++
T Consensus 173 ~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe 252 (639)
T KOG1130|consen 173 NAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFE 252 (639)
T ss_pred HHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccH
Confidence 34444443211 112345555566666788888887654322 223222 2245667778888889999
Q ss_pred HHHHHHHHhhH---hcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-------C-CCCCHhHHHHHHHHHHhcCCHH
Q 037414 324 EGLRLFSSMWD---DFA-VRPDVKHYTCMVDLLGRAGRLDEALKLIESM-------S-VEKDEGLWGALLGACRIHKNVD 391 (577)
Q Consensus 324 ~a~~~~~~m~~---~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~-~~p~~~~~~~ll~~~~~~g~~~ 391 (577)
.|.+.++.... +.| -.....+..+|...|.-...+++|+..+.+- + .--....+.+|..++...|..+
T Consensus 253 ~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~ 332 (639)
T KOG1130|consen 253 LAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHR 332 (639)
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHH
Confidence 99888876532 111 1223455556777777777888888777653 1 1124557888999999999999
Q ss_pred HHHHHHHHHHhc
Q 037414 392 LAEMAAKSLLER 403 (577)
Q Consensus 392 ~a~~~~~~~~~~ 403 (577)
.|..+.+..++.
T Consensus 333 kAl~fae~hl~~ 344 (639)
T KOG1130|consen 333 KALYFAELHLRS 344 (639)
T ss_pred HHHHHHHHHHHH
Confidence 998888776553
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.16 Score=46.94 Aligned_cols=113 Identities=13% Similarity=0.182 Sum_probs=85.7
Q ss_pred HHHHHHHhcCC--CCCcchHHHHHHHHHhC-----CChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCC---------
Q 037414 109 TDAHALFNGMK--ERDSVSWSVMVGGFSKV-----ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRK--------- 172 (577)
Q Consensus 109 ~~A~~~f~~m~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~--------- 172 (577)
-..++.|.... ++|-.+|-+.+..|... +..+=.-..++.|.+.|+.-|..+|..|++.+-+..
T Consensus 51 v~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~ 130 (406)
T KOG3941|consen 51 VHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQK 130 (406)
T ss_pred cchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHH
Confidence 34456677766 67888888888877653 455666667788999999999999999998765433
Q ss_pred -------ChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCH-HHHHHHHhhCCC
Q 037414 173 -------DIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVI-DDARQLFDQMPT 221 (577)
Q Consensus 173 -------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~ 221 (577)
.-+-+..++++|...|+.||..+-..|++++.+.+.. .+..++.-.|++
T Consensus 131 ~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 131 VFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred HHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 2335788999999999999999999999999998874 345555555543
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.42 Score=45.06 Aligned_cols=30 Identities=23% Similarity=0.327 Sum_probs=16.0
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHhhh
Q 037414 270 NVISWSAMIAAYGYHGQGKKALDLFPMMLS 299 (577)
Q Consensus 270 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 299 (577)
|...|-.|...|...|+++.|..-|.+..+
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r 184 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALR 184 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 444555555555555555555555555444
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.63 Score=47.70 Aligned_cols=156 Identities=16% Similarity=0.108 Sum_probs=89.1
Q ss_pred hcCCChHHHHHHHH--HHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHH
Q 037414 169 RDRKDIVMGRLIHD--IVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAV 246 (577)
Q Consensus 169 ~~~~~~~~a~~~~~--~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~L 246 (577)
.-.++++.+.++.+ .+. ..+ +..-.+.++..+-+.|..+.|+.+-..-. .-
T Consensus 272 v~~~d~~~v~~~i~~~~ll-~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------------------~r 324 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLL-PNI--PKDQGQSIARFLEKKGYPELALQFVTDPD------------------------HR 324 (443)
T ss_dssp HHTT-HHH-----HHHHTG-GG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------------------HH
T ss_pred HHcCChhhhhhhhhhhhhc-ccC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH------------------------HH
Confidence 34566666555543 111 111 24447777788888888888887743211 12
Q ss_pred HHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 037414 247 IDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGL 326 (577)
Q Consensus 247 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 326 (577)
-+...++|+++.|.++.++.. +...|..|.....+.|+.+-|.+.|.+... |..|+-.|...|+.+.-.
T Consensus 325 FeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~ 393 (443)
T PF04053_consen 325 FELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLS 393 (443)
T ss_dssp HHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHH
T ss_pred hHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHH
Confidence 455667888888877766654 555788888888888888888888877643 445555666677776666
Q ss_pred HHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Q 037414 327 RLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMS 369 (577)
Q Consensus 327 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 369 (577)
++.+...++ | -++....++.-.|+.++..+++.+.+
T Consensus 394 kl~~~a~~~-~------~~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 394 KLAKIAEER-G------DINIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp HHHHHHHHT-T-------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred HHHHHHHHc-c------CHHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 666555322 2 13444444555677777777776665
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.72 E-value=1.6 Score=43.39 Aligned_cols=126 Identities=17% Similarity=0.196 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC--CCh
Q 037414 194 FVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ--KNV 271 (577)
Q Consensus 194 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~--~~~ 271 (577)
.+|..+++.-.+..-++.|+++|-+..+... +.+++.++++.+..|+ .|+...|.++|+.-.. +|.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~-----------~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~ 465 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGI-----------VGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDS 465 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCC-----------CCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCc
Confidence 3444444444444444455555544443211 1234444444444333 3444444444443221 333
Q ss_pred hhH-HHHHHHHHHcCChHHHHHHHHHhhhCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHh
Q 037414 272 ISW-SAMIAAYGYHGQGKKALDLFPMMLSSRVLPN--RITFVSLLYACSHTGLVEEGLRLFSSM 332 (577)
Q Consensus 272 ~~~-~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m 332 (577)
..| +-.+.-+...++-+.|..+|+..+.. +..+ ...|..+|+-=+.-|++..+..+=+.|
T Consensus 466 ~~y~~kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf 528 (660)
T COG5107 466 TLYKEKYLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERF 528 (660)
T ss_pred hHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHH
Confidence 222 12233333444444455555433222 1111 223444444444445555554444444
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.53 E-value=3.9 Score=37.87 Aligned_cols=58 Identities=14% Similarity=0.097 Sum_probs=47.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCc---hhHHHHHHHHhccCChhHHHHHHHHHhhC
Q 037414 380 LLGACRIHKNVDLAEMAAKSLLERQPQNP---GHYVLLSNVYANAGRWQDVAKIRDLMTRR 437 (577)
Q Consensus 380 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 437 (577)
+..-|.+.|.+..|..-++.+++.-|+.+ ..+..+.++|.+.|-.++|.+.-+-+...
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 34568899999999999999999876654 45667888999999999999988777543
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.45 E-value=1.1 Score=42.89 Aligned_cols=112 Identities=11% Similarity=0.140 Sum_probs=49.8
Q ss_pred cCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHH--HH--HHHHHHHhccCCHHHH
Q 037414 253 CGSIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRI--TF--VSLLYACSHTGLVEEG 325 (577)
Q Consensus 253 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~--~~ll~a~~~~g~~~~a 325 (577)
.|+..+|-..++++.+ .|..+++-.=.+|..+|+.+.-...+++.... -.||.. +| ..+.-++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 4444454444444443 34445555555555555555555555555433 122221 11 1222233344555555
Q ss_pred HHHHHHhhHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 037414 326 LRLFSSMWDDFAVRP-DVKHYTCMVDLLGRAGRLDEALKLIESM 368 (577)
Q Consensus 326 ~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 368 (577)
++.-++.++ +.| |.-.-.++...+--.|+..++.++..+-
T Consensus 195 Ek~A~ralq---iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 195 EKQADRALQ---INRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred HHHHHhhcc---CCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 555544432 222 2223334444444555555555555544
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.59 Score=43.50 Aligned_cols=57 Identities=11% Similarity=0.123 Sum_probs=27.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCC---CchhHHHHHHHHhccCChhHHHHHHHHHhh
Q 037414 380 LLGACRIHKNVDLAEMAAKSLLERQPQ---NPGHYVLLSNVYANAGRWQDVAKIRDLMTR 436 (577)
Q Consensus 380 ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 436 (577)
|..++...|+++.|..+|..+.+..|+ -|..+.-|..+..+.|+.++|..+++++.+
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 344444455555555555555444333 233444444445555555555555554443
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.31 E-value=2.8 Score=35.32 Aligned_cols=125 Identities=11% Similarity=0.074 Sum_probs=58.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHH
Q 037414 275 SAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGR 354 (577)
Q Consensus 275 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 354 (577)
..++..+.+.+.+.....+++.+...+ ..+...++.++..|++.. .++..+.+.. .++......++..+.+
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHHHHH
Confidence 345555555556666666666665554 244445555666555432 2233333331 0112222334555555
Q ss_pred cCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHh
Q 037414 355 AGRLDEALKLIESMSVEKDEGLWGALLGACRIH-KNVDLAEMAAKSLLERQPQNPGHYVLLSNVYA 419 (577)
Q Consensus 355 ~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 419 (577)
.+.++++.-++.+++. |...+..+..+ ++.+.|.+++.+ +.++..|..++..+.
T Consensus 82 ~~l~~~~~~l~~k~~~------~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 82 AKLYEEAVELYKKDGN------FKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred cCcHHHHHHHHHhhcC------HHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 5666666666665542 11122222223 556666655543 223445555554443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.49 Score=38.53 Aligned_cols=89 Identities=19% Similarity=0.144 Sum_probs=69.1
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCc---hhHHHHHHHHhccCCh
Q 037414 351 LLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQ-PQNP---GHYVLLSNVYANAGRW 424 (577)
Q Consensus 351 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p~~~---~~~~~l~~~~~~~g~~ 424 (577)
++...|+++.|++.|.+. .+-| ....||.=..+++-.|+.++|..-+++++++- |... .+|+.-...|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 567788999999888776 3333 66788888889999999999999999888874 4422 3566777788889999
Q ss_pred hHHHHHHHHHhhCCC
Q 037414 425 QDVAKIRDLMTRRRL 439 (577)
Q Consensus 425 ~~A~~~~~~m~~~g~ 439 (577)
+.|..-|+...+.|-
T Consensus 132 d~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 132 DAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhHHHHHHhCC
Confidence 999988888777664
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.36 Score=48.41 Aligned_cols=62 Identities=15% Similarity=0.127 Sum_probs=51.0
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHhC
Q 037414 304 PNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDV----KHYTCMVDLLGRAGRLDEALKLIESM 368 (577)
Q Consensus 304 p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m 368 (577)
.+...++.+..+|...|++++|...|+..++ +.|+. ..|..+..+|...|++++|.+.+++.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3456788888899999999999999998873 56764 34788888999999999999988886
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.05 E-value=1.6 Score=36.63 Aligned_cols=56 Identities=21% Similarity=0.237 Sum_probs=38.3
Q ss_pred HHcCCHHHHHHHHHhC----CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 037414 353 GRAGRLDEALKLIESM----SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNP 408 (577)
Q Consensus 353 ~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 408 (577)
.+.|++++|.+.|+.+ +..| ....--.++.++.+.+++++|...+++.++++|.++
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp 81 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP 81 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Confidence 3567777777777777 2222 223555567777788888888888888888877765
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.05 E-value=3.1 Score=42.19 Aligned_cols=99 Identities=15% Similarity=0.189 Sum_probs=69.9
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-C-CCCH--hHHHHHHHHHH
Q 037414 310 VSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMS-V-EKDE--GLWGALLGACR 385 (577)
Q Consensus 310 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~-~p~~--~~~~~ll~~~~ 385 (577)
..+..++.+.|+.++|.+.+++|.+++...........|+..|...+++.++..++.+-. + .|.. ..|++.+-.++
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 345666778899999999999998765433345677789999999999999999998873 1 2333 36666654444
Q ss_pred hcCCH---------------HHHHHHHHHHHhcCCCCc
Q 037414 386 IHKNV---------------DLAEMAAKSLLERQPQNP 408 (577)
Q Consensus 386 ~~g~~---------------~~a~~~~~~~~~~~p~~~ 408 (577)
..++. ..|.+.+.++.+.+|..+
T Consensus 343 av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 343 AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 44431 235577888888887654
|
The molecular function of this protein is uncertain. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.73 Score=45.27 Aligned_cols=138 Identities=14% Similarity=0.014 Sum_probs=95.0
Q ss_pred HHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCC
Q 037414 278 IAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGR 357 (577)
Q Consensus 278 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 357 (577)
.+.|.+.|++..|...|++.+.. |. +.+.-+.++...... .-..++.-+.-.|.+.++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~------------l~-~~~~~~~ee~~~~~~---------~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF------------LE-YRRSFDEEEQKKAEA---------LKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH------------hh-ccccCCHHHHHHHHH---------HHHHHhhHHHHHHHhhhh
Confidence 45677777787777777775532 11 111112222222111 113355667777889999
Q ss_pred HHHHHHHHHhC-CCC-CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHH-HHHHHHH
Q 037414 358 LDEALKLIESM-SVE-KDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDV-AKIRDLM 434 (577)
Q Consensus 358 ~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~m 434 (577)
+.+|++.-+.. ..+ +|....-.=..++...|+++.|+..|+++++.+|.|..+-..|+.+-.+..++.+. .++|..|
T Consensus 273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999887776 334 45556666678899999999999999999999999988888888887776666554 7788888
Q ss_pred hhC
Q 037414 435 TRR 437 (577)
Q Consensus 435 ~~~ 437 (577)
-.+
T Consensus 353 F~k 355 (397)
T KOG0543|consen 353 FAK 355 (397)
T ss_pred hhc
Confidence 654
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.98 Score=46.34 Aligned_cols=29 Identities=17% Similarity=0.074 Sum_probs=14.4
Q ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHhhCC
Q 037414 192 DQFVCAALVDMYAKCKVIDDARQLFDQMP 220 (577)
Q Consensus 192 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 220 (577)
+...|..|.+...+.|+++-|++.|.+..
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~ 374 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKAK 374 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHCT
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence 34455555555555555555555554443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.82 E-value=9.6 Score=39.67 Aligned_cols=357 Identities=13% Similarity=0.075 Sum_probs=200.4
Q ss_pred CCChhhHHHHHHhccC---hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHhcCCC---CCcchHHHHH
Q 037414 57 SVDPKFFISSLLSCRN---IFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKE---RDSVSWSVMV 130 (577)
Q Consensus 57 ~p~~~~~~~ll~a~~~---~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li 130 (577)
..+...+..++.--.. +..++.++..++.. +|..-.-|-.....=.+.|..+.+.++|++-.. .++..|....
T Consensus 42 ~~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k-yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 42 SLDFDAWTTLIQENDSIEDVDALREVYDIFLSK-YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYL 120 (577)
T ss_pred hhcccchHHHHhccCchhHHHHHHHHHHHHHhh-CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 3455556666665544 55666666666543 233333556666666678999999999998654 2555666665
Q ss_pred HHHH-hCCChhHHHHHHHHHHHC-CCCC-CcchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh--
Q 037414 131 GGFS-KVADFINCFETFREFIRC-GMQL-DSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAK-- 205 (577)
Q Consensus 131 ~~~~-~~g~~~~A~~~~~~m~~~-g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-- 205 (577)
.-+. ..|+.+...+.|+..... |..- ....|...+.--...+++....++++++++.- ..-++..-.-|.+
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP----~~~~~~~f~~f~~~l 196 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIP----LHQLNRHFDRFKQLL 196 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhh----hhHhHHHHHHHHHHH
Confidence 5443 467888888888888763 3322 33456666766677888999999999988642 2223322222221
Q ss_pred -C------CCHHHHHHHHhhCCC--------CChhHHHHHHhc-------------------------------------
Q 037414 206 -C------KVIDDARQLFDQMPT--------RDLVTWTVMIGA------------------------------------- 233 (577)
Q Consensus 206 -~------g~~~~A~~~~~~m~~--------~~~~~~~~~i~~------------------------------------- 233 (577)
. -..+++.++=..... .....+..-+..
T Consensus 197 ~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~ 276 (577)
T KOG1258|consen 197 NQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRW 276 (577)
T ss_pred hcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHH
Confidence 1 122222222111110 011111111110
Q ss_pred -------------CC-CCcchhhHHHHHHHHHhcCCHHHHHHHHHhccCC---ChhhHHHHHHHHHHcCChHHHHHHHHH
Q 037414 234 -------------NK-FLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQK---NVISWSAMIAAYGYHGQGKKALDLFPM 296 (577)
Q Consensus 234 -------------~g-~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~ 296 (577)
.+ .+++..+|..-++.-.+.|+.+.+.-+|++..-| =...|--.+.-.-..|+.+-|..++..
T Consensus 277 ~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~ 356 (577)
T KOG1258|consen 277 GFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLAR 356 (577)
T ss_pred hhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHh
Confidence 11 1223445555555555556666665555555432 112233333333344666666666555
Q ss_pred hhhCCC--CCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCH-HHHHHHHHHHHHcCCHHHHH---HHHHhC-C
Q 037414 297 MLSSRV--LPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDV-KHYTCMVDLLGRAGRLDEAL---KLIESM-S 369 (577)
Q Consensus 297 m~~~g~--~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~---~~~~~m-~ 369 (577)
..+--+ .|....+.+.+ +-..|+.+.|..+++...++ . |+. ..-..-+....+.|..+.+. .++... .
T Consensus 357 ~~~i~~k~~~~i~L~~a~f--~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~ 431 (577)
T KOG1258|consen 357 ACKIHVKKTPIIHLLEARF--EESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYE 431 (577)
T ss_pred hhhhcCCCCcHHHHHHHHH--HHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcc
Confidence 443322 23333333333 34568999999999999765 3 553 33334456667788888877 444443 1
Q ss_pred CCCCHhHHHHHHH-----HHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCC
Q 037414 370 VEKDEGLWGALLG-----ACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGR 423 (577)
Q Consensus 370 ~~p~~~~~~~ll~-----~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 423 (577)
-.-+..+...+.- -+...++.+.|..++.++.+..|++...|..+++.....+.
T Consensus 432 ~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 432 GKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred cccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 1223323332222 14556889999999999999999999999999888776653
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=93.76 E-value=3.3 Score=34.05 Aligned_cols=138 Identities=14% Similarity=0.072 Sum_probs=72.2
Q ss_pred hcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCC-ChhHHHHHHhcCCCCcchhhHHHHH
Q 037414 169 RDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTVMIGANKFLLDVILGTAVI 247 (577)
Q Consensus 169 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~i~~~g~~~~~~~~~~Li 247 (577)
.-.|.++++.++..+..++. +..-+|..|--....-+-+...++++.+-.- |... ..-...++
T Consensus 13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~-------------C~NlKrVi 76 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISK-------------CGNLKRVI 76 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG--------------S-THHHH
T ss_pred HHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCchh-------------hcchHHHH
Confidence 44577888888888777653 3333343333333333334444444443220 1100 00011234
Q ss_pred HHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 037414 248 DMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLR 327 (577)
Q Consensus 248 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 327 (577)
.+|++.|... ......+......|.-++-.+++.++.+ +-+|++.....+..||.+.|+..++.+
T Consensus 77 ~C~~~~n~~s--------------e~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~e 141 (161)
T PF09205_consen 77 ECYAKRNKLS--------------EYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANE 141 (161)
T ss_dssp HHHHHTT-----------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHhcchH--------------HHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHH
Confidence 4444444332 2344566777888888888888888765 346777777788888888888888888
Q ss_pred HHHHhhHhcCC
Q 037414 328 LFSSMWDDFAV 338 (577)
Q Consensus 328 ~~~~m~~~~~~ 338 (577)
++.++.++ |+
T Consensus 142 ll~~ACek-G~ 151 (161)
T PF09205_consen 142 LLKEACEK-GL 151 (161)
T ss_dssp HHHHHHHT-T-
T ss_pred HHHHHHHh-ch
Confidence 88888754 55
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.70 E-value=4.9 Score=37.28 Aligned_cols=55 Identities=18% Similarity=0.161 Sum_probs=33.2
Q ss_pred HHHHHHHcCChHHHHHHHHHhhhCCCCCCH---HHHHHHHHHHhccCCHHHHHHHHHHh
Q 037414 277 MIAAYGYHGQGKKALDLFPMMLSSRVLPNR---ITFVSLLYACSHTGLVEEGLRLFSSM 332 (577)
Q Consensus 277 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~m 332 (577)
+..-|.+.|.+..|..-+++|++. .+-+. ..+-.+..+|...|..++|...-.-+
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl 230 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVL 230 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 445677777777777777777765 22122 23444556666677766666655544
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.59 E-value=12 Score=40.02 Aligned_cols=100 Identities=16% Similarity=0.183 Sum_probs=50.1
Q ss_pred HHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 037414 249 MYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRL 328 (577)
Q Consensus 249 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 328 (577)
-+...|+..+|.++-.+.+-||-..|-.-+.+++..+++++-+++-+.+.. +.-|.-+..+|.+.|+.++|.++
T Consensus 693 ~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c~~~~n~~EA~KY 766 (829)
T KOG2280|consen 693 TLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEACLKQGNKDEAKKY 766 (829)
T ss_pred HHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHHHhcccHHHHhhh
Confidence 344455555555555555555555555555555555555554444433321 12233455555555666555555
Q ss_pred HHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 037414 329 FSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKL 364 (577)
Q Consensus 329 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 364 (577)
+-..- |.. -.+.+|.+.|++.+|.++
T Consensus 767 iprv~---~l~-------ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 767 IPRVG---GLQ-------EKVKAYLRVGDVKEAADL 792 (829)
T ss_pred hhccC---ChH-------HHHHHHHHhccHHHHHHH
Confidence 54431 111 244555555555555544
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=93.56 E-value=1.6 Score=44.14 Aligned_cols=77 Identities=9% Similarity=0.079 Sum_probs=49.9
Q ss_pred HHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHh
Q 037414 359 DEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMT 435 (577)
Q Consensus 359 ~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 435 (577)
.+|.++.++. .+.| |......+..+....++.+.|...|+++..++|+.+.+|........-.|+.++|.+.+++-.
T Consensus 321 ~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 321 QKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 3444444443 3333 455555555555666667777777777777777777777777777777777777777776643
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.53 E-value=6.9 Score=37.07 Aligned_cols=142 Identities=15% Similarity=0.073 Sum_probs=80.7
Q ss_pred HHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC-HHHHHHHHHHHHHcC
Q 037414 278 IAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD-VKHYTCMVDLLGRAG 356 (577)
Q Consensus 278 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g 356 (577)
.......|+..+|..+|+........ +...-..+..+|...|+++.|..++..+-.+ ..-+ .....+-|..+.+..
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~--~~~~~~~~l~a~i~ll~qaa 217 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQ--AQDKAAHGLQAQIELLEQAA 217 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCccc--chhhHHHHHHHHHHHHHHHh
Confidence 34455677777777777777665322 2333445667777777777777777766322 1111 111122344555555
Q ss_pred CHHHHHHHHHhCCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCchhHHHHHHHHhccC
Q 037414 357 RLDEALKLIESMSVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQ--PQNPGHYVLLSNVYANAG 422 (577)
Q Consensus 357 ~~~~A~~~~~~m~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g 422 (577)
...+...+-++..-.| |...--.+...+...|+.+.|.+.+=.+++.+ -.+...-..|+..+.-.|
T Consensus 218 ~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 218 ATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred cCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 5554444555553345 44455556666777777777777666665543 445556666666666655
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=93.49 E-value=16 Score=41.24 Aligned_cols=32 Identities=9% Similarity=-0.056 Sum_probs=19.3
Q ss_pred CCCCcchHHHHHHHHhcCC--ChHHHHHHHHHHHH
Q 037414 154 MQLDSYTLPFVIRACRDRK--DIVMGRLIHDIVLK 186 (577)
Q Consensus 154 ~~p~~~t~~~ll~~~~~~~--~~~~a~~~~~~~~~ 186 (577)
..|+ .-.-.+|.++.+.+ .++.+.+....+..
T Consensus 787 ~~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 787 RAPD-KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred cCcc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 3455 34456777777766 56666666555553
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.38 E-value=3.6 Score=34.56 Aligned_cols=112 Identities=15% Similarity=0.153 Sum_probs=50.7
Q ss_pred HHHHcCChHHHHHHHHHhhhCC--CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCC
Q 037414 280 AYGYHGQGKKALDLFPMMLSSR--VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGR 357 (577)
Q Consensus 280 ~~~~~g~~~~A~~l~~~m~~~g--~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 357 (577)
...+.|++++|.+.|+.+...= -+-....-..++.+|...+++++|...++..++-+.-.|+ ..|...+.+++.-..
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL~~~~~ 97 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGLSYYEQ 97 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHHHHHHH
Confidence 3344555555555555555431 0111223334555555555555555555555543322222 223333333332221
Q ss_pred HHHHHHHHHhC-CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 037414 358 LDEALKLIESM-SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNP 408 (577)
Q Consensus 358 ~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 408 (577)
.+ ..|..+ +.+.|. +....|...|+++++..|++.
T Consensus 98 ~~---~~~~~~~~~drD~-------------~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 98 DE---GSLQSFFRSDRDP-------------TPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred hh---hHHhhhcccccCc-------------HHHHHHHHHHHHHHHHCcCCh
Confidence 11 111111 111111 224577788888888888864
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=93.23 E-value=2.2 Score=41.29 Aligned_cols=191 Identities=8% Similarity=0.042 Sum_probs=111.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHh-c------cC--CChhhHHHHHHHHHHcCChHHHHHHHHHhhhC-CCCCC---HHH
Q 037414 242 LGTAVIDMYAKCGSIDSAREIFDR-M------RQ--KNVISWSAMIAAYGYHGQGKKALDLFPMMLSS-RVLPN---RIT 308 (577)
Q Consensus 242 ~~~~Li~~~~~~g~~~~A~~~~~~-~------~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~---~~t 308 (577)
++..+.++.++.|.+++++..--. | .+ .-...|..+..++-+..++.+++.+-..-... |..|- ...
T Consensus 45 ~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~ 124 (518)
T KOG1941|consen 45 VLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQV 124 (518)
T ss_pred HhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchh
Confidence 455566777777777766543221 1 11 11245666666666666666666665543332 22231 122
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhhHhcCCC--C--CHHHHHHHHHHHHHcCCHHHHHHHHHh-------CCCCCCHhHH
Q 037414 309 FVSLLYACSHTGLVEEGLRLFSSMWDDFAVR--P--DVKHYTCMVDLLGRAGRLDEALKLIES-------MSVEKDEGLW 377 (577)
Q Consensus 309 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~--p--~~~~~~~li~~~~~~g~~~~A~~~~~~-------m~~~p~~~~~ 377 (577)
..++-.|....+.++++.+.|+...+-..-. | ...+|-.|-..|.+..++++|.-+..+ .++..-..-|
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 3345566666777888888888775421111 1 246777888888888888876644433 3322111122
Q ss_pred H-----HHHHHHHhcCCHHHHHHHHHHHHhcC------CCCchhHHHHHHHHhccCChhHHHHHHH
Q 037414 378 G-----ALLGACRIHKNVDLAEMAAKSLLERQ------PQNPGHYVLLSNVYANAGRWQDVAKIRD 432 (577)
Q Consensus 378 ~-----~ll~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 432 (577)
. .|.-+++..|..-.|.+.-++..++- +-.......+.++|...|+.+.|..-++
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe 270 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYE 270 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHH
Confidence 2 33456788888888888877776542 2233445678888888888887766554
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.14 E-value=4.7 Score=33.98 Aligned_cols=42 Identities=10% Similarity=-0.009 Sum_probs=18.2
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhc
Q 037414 128 VMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRD 170 (577)
Q Consensus 128 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 170 (577)
.++..+.+.+.+.....+++.+...+. .+...++.++..+++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~ 53 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence 344444444444444444444444331 233344444444443
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=92.93 E-value=5.8 Score=34.48 Aligned_cols=32 Identities=9% Similarity=0.105 Sum_probs=16.8
Q ss_pred HHHHHHHHCCCCCCcchHHHHHHHHhcCCChH
Q 037414 144 ETFREFIRCGMQLDSYTLPFVIRACRDRKDIV 175 (577)
Q Consensus 144 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 175 (577)
+.++.+.+.+++|+...+..+++.+.+.|.+.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~ 46 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFS 46 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Confidence 33444444555555555555555555555544
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=92.78 E-value=7.2 Score=40.65 Aligned_cols=161 Identities=15% Similarity=0.140 Sum_probs=108.6
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHhhhCC-CCCCH-----HHHHHHHHHHhc----cCCHHHHHHHHHHhhHhcCCCCCH
Q 037414 273 SWSAMIAAYGYHGQGKKALDLFPMMLSSR-VLPNR-----ITFVSLLYACSH----TGLVEEGLRLFSSMWDDFAVRPDV 342 (577)
Q Consensus 273 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~-----~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~ 342 (577)
....+++...-.|+-+.+++++.+..+.+ +.-.. .+|..++..++. ....+.+.+++..+.++ -|+.
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s 266 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNS 266 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCc
Confidence 34456666666788888888888766542 22211 234444444433 45788999999999754 4776
Q ss_pred HHHHHH-HHHHHHcCCHHHHHHHHHhCC-CC-----CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 037414 343 KHYTCM-VDLLGRAGRLDEALKLIESMS-VE-----KDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLS 415 (577)
Q Consensus 343 ~~~~~l-i~~~~~~g~~~~A~~~~~~m~-~~-----p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 415 (577)
..|... ...+...|++++|.+.|++.- .+ -....+--+.-.+....++++|...|.++.+.+.-+...|..+.
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~ 346 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 655443 356677899999999999752 11 12233444555677889999999999999998766666665444
Q ss_pred -HHHhccCCh-------hHHHHHHHHHhh
Q 037414 416 -NVYANAGRW-------QDVAKIRDLMTR 436 (577)
Q Consensus 416 -~~~~~~g~~-------~~A~~~~~~m~~ 436 (577)
-+|...|+. ++|.+++.+...
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 445677888 888888877754
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.47 E-value=9.9 Score=36.05 Aligned_cols=51 Identities=10% Similarity=0.135 Sum_probs=23.6
Q ss_pred hcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCC
Q 037414 169 RDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMP 220 (577)
Q Consensus 169 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 220 (577)
...+++.++..++....... +-+....-.|+.+|...|+.+.|..+++.++
T Consensus 145 ~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 34455555555555444432 2223334444445555555555555555444
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=92.28 E-value=2.3 Score=41.15 Aligned_cols=142 Identities=10% Similarity=0.143 Sum_probs=96.3
Q ss_pred CCChhhHHHHHHhccC-----hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--CC----ChHHHHHHHhcCCCC----
Q 037414 57 SVDPKFFISSLLSCRN-----IFQIRQVHAQIVAGGTLTNLIVANKLLYIYAL--HK----ALTDAHALFNGMKER---- 121 (577)
Q Consensus 57 ~p~~~~~~~ll~a~~~-----~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~--~g----~~~~A~~~f~~m~~~---- 121 (577)
.....+++++|..-.. ++....+++.|.+.|+..+.+++-+....... .. ....|..+|+.|++.
T Consensus 57 ~~~~~~la~~l~~~~~~p~~~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fL 136 (297)
T PF13170_consen 57 GNHRFILAALLDISFEDPEEAFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFL 136 (297)
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccc
Confidence 3456677777777666 77888999999999999888777664443333 22 345788999999863
Q ss_pred ---CcchHHHHHHHHHhCCC----hhHHHHHHHHHHHCCCCCCcc--hHHHHHHHHhcCCC--hHHHHHHHHHHHHcCCC
Q 037414 122 ---DSVSWSVMVGGFSKVAD----FINCFETFREFIRCGMQLDSY--TLPFVIRACRDRKD--IVMGRLIHDIVLKSGLD 190 (577)
Q Consensus 122 ---~~~~~~~li~~~~~~g~----~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~~~--~~~a~~~~~~~~~~g~~ 190 (577)
+-.++..|+.. ...+ .+.+..+|+.+...|...+.. ....++..+..... ..++..+++.+.+.|++
T Consensus 137 Ts~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~k 214 (297)
T PF13170_consen 137 TSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVK 214 (297)
T ss_pred cCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCc
Confidence 44456666654 3333 356788899999888776443 34444444433333 34678889999999988
Q ss_pred CcHHHHHHHH
Q 037414 191 IDQFVCAALV 200 (577)
Q Consensus 191 ~~~~~~~~li 200 (577)
+....|..+.
T Consensus 215 ik~~~yp~lG 224 (297)
T PF13170_consen 215 IKYMHYPTLG 224 (297)
T ss_pred cccccccHHH
Confidence 8777666543
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=92.06 E-value=8.8 Score=38.94 Aligned_cols=156 Identities=15% Similarity=0.124 Sum_probs=101.1
Q ss_pred hhH--HHHHHHHHHcC-----ChHHHHHHHHHhhh-CCCCCCHH-HHHHHHHHHhc---------cCCHHHHHHHHHHhh
Q 037414 272 ISW--SAMIAAYGYHG-----QGKKALDLFPMMLS-SRVLPNRI-TFVSLLYACSH---------TGLVEEGLRLFSSMW 333 (577)
Q Consensus 272 ~~~--~~li~~~~~~g-----~~~~A~~l~~~m~~-~g~~p~~~-t~~~ll~a~~~---------~g~~~~a~~~~~~m~ 333 (577)
..| ...+.+..... ..+.|+.+|.+... +.+.|+-. .|..+..++.. .....+|.++-+..+
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 456 66666655422 34678889999882 23566643 33333222211 234556677777665
Q ss_pred HhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHh-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchh
Q 037414 334 DDFAVRP-DVKHYTCMVDLLGRAGRLDEALKLIESM-SVEKDEG-LWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGH 410 (577)
Q Consensus 334 ~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 410 (577)
+ +.| |......+..++.-.|+++.|..+|++. .+.||.. +|....-.+.-.|+.++|.+.+++.++++|....+
T Consensus 332 e---ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 332 D---ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred h---cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 3 334 4566666666677788899999999998 5677654 66655566777899999999999999999986543
Q ss_pred --HHHHHHHHhccCChhHHHHHH
Q 037414 411 --YVLLSNVYANAGRWQDVAKIR 431 (577)
Q Consensus 411 --~~~l~~~~~~~g~~~~A~~~~ 431 (577)
....+..|... ..++|.+++
T Consensus 409 ~~~~~~~~~~~~~-~~~~~~~~~ 430 (458)
T PRK11906 409 VVIKECVDMYVPN-PLKNNIKLY 430 (458)
T ss_pred HHHHHHHHHHcCC-chhhhHHHH
Confidence 33344466655 456666665
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.02 E-value=0.36 Score=29.09 Aligned_cols=32 Identities=19% Similarity=0.010 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 037414 375 GLWGALLGACRIHKNVDLAEMAAKSLLERQPQ 406 (577)
Q Consensus 375 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 406 (577)
.+|..+...+...|++++|+..++++++.+|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35677777788888888888888888887775
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.00 E-value=3.3 Score=33.92 Aligned_cols=53 Identities=21% Similarity=0.147 Sum_probs=25.8
Q ss_pred HHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhH
Q 037414 281 YGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWD 334 (577)
Q Consensus 281 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 334 (577)
.+..|+.++|++.|.+.+.. .+-....||.-..++.-.|+.++|.+-+.+.++
T Consensus 53 laE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 34445555555555554443 222344455555555555555555555554443
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.95 E-value=0.51 Score=28.26 Aligned_cols=32 Identities=28% Similarity=0.157 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 037414 376 LWGALLGACRIHKNVDLAEMAAKSLLERQPQN 407 (577)
Q Consensus 376 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 407 (577)
.|..+...+...|++++|++.++++++++|++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 45566677777777777877777777777764
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.91 E-value=10 Score=34.90 Aligned_cols=85 Identities=13% Similarity=0.094 Sum_probs=45.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhCC-------CCCCH-hHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCchhHHH
Q 037414 346 TCMVDLLGRAGRLDEALKLIESMS-------VEKDE-GLWGALLGACRIHKNVDLAEMAAKSLLER----QPQNPGHYVL 413 (577)
Q Consensus 346 ~~li~~~~~~g~~~~A~~~~~~m~-------~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~~~~~~~~ 413 (577)
...-..|.+..++++|-..|.+-+ --|+. ..+-+.|-.+....|+..|+..++.--+. .|.+..+...
T Consensus 154 gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~len 233 (308)
T KOG1585|consen 154 GKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLEN 233 (308)
T ss_pred HHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHH
Confidence 333445556666666655554431 11222 12334444455556777777777664433 2555566666
Q ss_pred HHHHHhccCChhHHHHHH
Q 037414 414 LSNVYANAGRWQDVAKIR 431 (577)
Q Consensus 414 l~~~~~~~g~~~~A~~~~ 431 (577)
|+.+|- .|+.+++.++.
T Consensus 234 LL~ayd-~gD~E~~~kvl 250 (308)
T KOG1585|consen 234 LLTAYD-EGDIEEIKKVL 250 (308)
T ss_pred HHHHhc-cCCHHHHHHHH
Confidence 776664 46666665554
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=91.81 E-value=13 Score=35.79 Aligned_cols=17 Identities=24% Similarity=-0.162 Sum_probs=10.6
Q ss_pred HHhcCCHHHHHHHHHHH
Q 037414 384 CRIHKNVDLAEMAAKSL 400 (577)
Q Consensus 384 ~~~~g~~~~a~~~~~~~ 400 (577)
+.+.++++.|...++-.
T Consensus 256 ~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHhhcCHHHHHHHHHHH
Confidence 45566677776666643
|
It is also involved in sporulation []. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=91.74 E-value=14 Score=38.47 Aligned_cols=172 Identities=14% Similarity=0.108 Sum_probs=100.6
Q ss_pred HHHHHHHHHHCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHcC-CCCc-----HHHHHHHHHHHHh----CCCHHH
Q 037414 142 CFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSG-LDID-----QFVCAALVDMYAK----CKVIDD 211 (577)
Q Consensus 142 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~-----~~~~~~li~~~~~----~g~~~~ 211 (577)
..-+|.-+... ++|. +..++...+=.||-+.+.+.+.+..+.+ +... .-+|...+..++. ....+.
T Consensus 176 G~G~f~L~lSl-LPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~ 251 (468)
T PF10300_consen 176 GFGLFNLVLSL-LPPK---VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEE 251 (468)
T ss_pred HHHHHHHHHHh-CCHH---HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHH
Confidence 34455555553 3333 4456666666677777877777665533 1111 1223333333332 456778
Q ss_pred HHHHHhhCCC--CChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC-------CChhhHHHHHHHHH
Q 037414 212 ARQLFDQMPT--RDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ-------KNVISWSAMIAAYG 282 (577)
Q Consensus 212 A~~~~~~m~~--~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~li~~~~ 282 (577)
|.++++.+.+ |+..-|.- .-...+...|++++|.+.|+.... -....+--+.-.+.
T Consensus 252 a~~lL~~~~~~yP~s~lfl~---------------~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~ 316 (468)
T PF10300_consen 252 AEELLEEMLKRYPNSALFLF---------------FEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHM 316 (468)
T ss_pred HHHHHHHHHHhCCCcHHHHH---------------HHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHH
Confidence 8888888766 44433332 235667778888888888886542 12233444566677
Q ss_pred HcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHH-HhccCCH-------HHHHHHHHHhh
Q 037414 283 YHGQGKKALDLFPMMLSSRVLPNRITFVSLLYA-CSHTGLV-------EEGLRLFSSMW 333 (577)
Q Consensus 283 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~-------~~a~~~~~~m~ 333 (577)
-.+++++|.+.|..+.+.. .....+|.-+..+ +...|+. ++|.++|.++.
T Consensus 317 ~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 317 FQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 7888888888888888753 3344444433332 3345555 77888887764
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=91.73 E-value=7.3 Score=33.44 Aligned_cols=90 Identities=19% Similarity=0.156 Sum_probs=59.0
Q ss_pred HHHhccCCHHHHHHHHHHhhHhcCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHHhcCCHH
Q 037414 314 YACSHTGLVEEGLRLFSSMWDDFAVRPDVKHY-TCMVDLLGRAGRLDEALKLIESM-SVEKDEGLWGALLGACRIHKNVD 391 (577)
Q Consensus 314 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~ 391 (577)
..-...++.+++..++..+. -+.|..... ..-...+.+.|++.+|.++|+++ .-.|....-.+|+..|....+-.
T Consensus 18 ~~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP 94 (160)
T ss_pred HHHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence 33456678888888888884 456653222 22233467889999999999998 33455555667777777665555
Q ss_pred HHHHHHHHHHhcCCC
Q 037414 392 LAEMAAKSLLERQPQ 406 (577)
Q Consensus 392 ~a~~~~~~~~~~~p~ 406 (577)
.=....+++++.+++
T Consensus 95 ~Wr~~A~evle~~~d 109 (160)
T PF09613_consen 95 SWRRYADEVLESGAD 109 (160)
T ss_pred HHHHHHHHHHhcCCC
Confidence 555666667766654
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.67 E-value=4.1 Score=38.10 Aligned_cols=102 Identities=14% Similarity=0.128 Sum_probs=61.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC-HhHHHHHH
Q 037414 308 TFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP-DVKHYTCMVDLLGRAGRLDEALKLIESM----SVEKD-EGLWGALL 381 (577)
Q Consensus 308 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~-~~~~~~ll 381 (577)
.|+.-+..+ ..|++..|.+.|...++++.-.+ ....+--|...+...|++++|..+|..+ |..|- +..+--|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 455555443 45667777777777765431111 1234445667777777777777777666 22222 23555566
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCchh
Q 037414 382 GACRIHKNVDLAEMAAKSLLERQPQNPGH 410 (577)
Q Consensus 382 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 410 (577)
......|+.++|...++++.+..|..+.+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 66677777888888888887777776543
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.45 E-value=10 Score=41.06 Aligned_cols=175 Identities=10% Similarity=0.069 Sum_probs=102.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccCCChhhHHH---HHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccC
Q 037414 244 TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSA---MIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTG 320 (577)
Q Consensus 244 ~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 320 (577)
..-+++..+-..++.|..+-+.-..+....-+. -.+.+-+.|++++|...|-+-... +.|.. ++.-|....
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s~-----Vi~kfLdaq 411 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPSE-----VIKKFLDAQ 411 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChHH-----HHHHhcCHH
Confidence 345777777777888877776654322222222 233455678888888888776543 34432 445555666
Q ss_pred CHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHH
Q 037414 321 LVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKD-EGLWGALLGACRIHKNVDLAEMAAKS 399 (577)
Q Consensus 321 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~ 399 (577)
...+-..+++.+.++ |+ .+..+-..|+.+|.+.++.++-.++++... +-. ..-....+..|.+.+-.++|..+..+
T Consensus 412 ~IknLt~YLe~L~~~-gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~e~al~Ilr~snyl~~a~~LA~k 488 (933)
T KOG2114|consen 412 RIKNLTSYLEALHKK-GL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDVETALEILRKSNYLDEAELLATK 488 (933)
T ss_pred HHHHHHHHHHHHHHc-cc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeHHHHHHHHHHhChHHHHHHHHHH
Confidence 666666777777554 55 455666788888888888888887777653 110 11234556666666666666666554
Q ss_pred HHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHH
Q 037414 400 LLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLM 434 (577)
Q Consensus 400 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 434 (577)
... +. ..|-..+...|++++|.+.++.|
T Consensus 489 ~~~----he---~vl~ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 489 FKK----HE---WVLDILLEDLHNYEEALRYISSL 516 (933)
T ss_pred hcc----CH---HHHHHHHHHhcCHHHHHHHHhcC
Confidence 332 11 12223344556666666665544
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=91.38 E-value=30 Score=39.29 Aligned_cols=110 Identities=17% Similarity=0.107 Sum_probs=53.1
Q ss_pred HHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 037414 248 DMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLR 327 (577)
Q Consensus 248 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 327 (577)
+.--+.|.+++|..++.-=.+.-...|.+-...+.+.+.+++|.-.|+..-+ ..-.+.+|...|++++|..
T Consensus 916 n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~ 986 (1265)
T KOG1920|consen 916 NYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALS 986 (1265)
T ss_pred HHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHH
Confidence 3333455555555444322222223333334444445566666655554322 1123456666666666666
Q ss_pred HHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 037414 328 LFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM 368 (577)
Q Consensus 328 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 368 (577)
+..++.. +-.--..+-..|+.-+...++.-+|-++..+.
T Consensus 987 ~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 987 LAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred HHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence 6665521 11111222345566666666666666666555
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=91.09 E-value=1.1 Score=38.49 Aligned_cols=82 Identities=10% Similarity=-0.007 Sum_probs=45.2
Q ss_pred cCCChHHHHHHHhcCC--CC-CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCChHHHHHH
Q 037414 104 LHKALTDAHALFNGMK--ER-DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLI 180 (577)
Q Consensus 104 ~~g~~~~A~~~f~~m~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 180 (577)
..|++++|..+|.-+. .+ |..-|..|..++-..+++++|+..|...-..+. -|...+-..-.++...|+.+.|+..
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~~~ 127 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKARQC 127 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHHHH
Confidence 4566666666665432 22 444455555556666666666666655544332 2334444455555566666666666
Q ss_pred HHHHHH
Q 037414 181 HDIVLK 186 (577)
Q Consensus 181 ~~~~~~ 186 (577)
|...++
T Consensus 128 f~~a~~ 133 (165)
T PRK15331 128 FELVNE 133 (165)
T ss_pred HHHHHh
Confidence 665554
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=91.06 E-value=12 Score=38.24 Aligned_cols=63 Identities=17% Similarity=0.062 Sum_probs=44.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CchhHHHHHHHHhccCChhHHHHHHHHHhhCCC
Q 037414 377 WGALLGACRIHKNVDLAEMAAKSLLERQPQ--NPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRL 439 (577)
Q Consensus 377 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 439 (577)
=..+..++.+.|+.++|++.++++++..|. +......|++.+...+++.++..++.+--+..+
T Consensus 262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~l 326 (539)
T PF04184_consen 262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISL 326 (539)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccC
Confidence 344666677788888888888888776654 344667788888888888888888776544333
|
The molecular function of this protein is uncertain. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.88 E-value=1.3 Score=42.05 Aligned_cols=61 Identities=18% Similarity=0.183 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhh
Q 037414 376 LWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTR 436 (577)
Q Consensus 376 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 436 (577)
++..++..+...|+.+.+.+.++++.+.+|-+...|..++.+|.+.|+...|...++.+.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 5556667777778888888888888888888888888888888888888888888877765
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.61 E-value=6.9 Score=37.62 Aligned_cols=148 Identities=11% Similarity=0.072 Sum_probs=95.3
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHH----HHHHHHHhCCCH
Q 037414 134 SKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCA----ALVDMYAKCKVI 209 (577)
Q Consensus 134 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~----~li~~~~~~g~~ 209 (577)
.-+|...+|-..++++++. .+.|...+...=.+|.-.|+...-+..+++++.. ..+|...|. .+.-++..+|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 3467778888888888775 4557777777777888888887777777777654 234443333 333344578888
Q ss_pred HHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC--CCh-----hhHHHHHHHHH
Q 037414 210 DDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ--KNV-----ISWSAMIAAYG 282 (577)
Q Consensus 210 ~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~--~~~-----~~~~~li~~~~ 282 (577)
++|++.-++..+-|.. |...-.++...+-..|+..++.++..+-.. ++. .-|=-..-.+.
T Consensus 192 ~dAEk~A~ralqiN~~-------------D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~i 258 (491)
T KOG2610|consen 192 DDAEKQADRALQINRF-------------DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHI 258 (491)
T ss_pred hhHHHHHHhhccCCCc-------------chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhh
Confidence 8888888877664432 444555667777778888888887776553 110 01112223345
Q ss_pred HcCChHHHHHHHHH
Q 037414 283 YHGQGKKALDLFPM 296 (577)
Q Consensus 283 ~~g~~~~A~~l~~~ 296 (577)
..+.++.|+++|+.
T Consensus 259 E~aeye~aleIyD~ 272 (491)
T KOG2610|consen 259 EGAEYEKALEIYDR 272 (491)
T ss_pred cccchhHHHHHHHH
Confidence 56788888888875
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.53 E-value=3.8 Score=35.40 Aligned_cols=120 Identities=17% Similarity=0.058 Sum_probs=75.3
Q ss_pred HcCCChHHHHHHHhcCCCCCcchHHHHH-----HHHHhCCChhHHHHHHHHHHHCCCCCCcc-hHHHHHHH--HhcCCCh
Q 037414 103 ALHKALTDAHALFNGMKERDSVSWSVMV-----GGFSKVADFINCFETFREFIRCGMQLDSY-TLPFVIRA--CRDRKDI 174 (577)
Q Consensus 103 ~~~g~~~~A~~~f~~m~~~~~~~~~~li-----~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~--~~~~~~~ 174 (577)
+..+..++|+.-|..+.+.+.-+|-.|. ....+.|+...|+..|.+.-...-.|-.. -..-|=.+ +...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 4556677777777777665555554443 34566788888888888876654333332 11112112 3456777
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCC
Q 037414 175 VMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR 222 (577)
Q Consensus 175 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 222 (577)
+......+-+-..+-+.....-.+|.-+-.+.|++.+|.+.|.++...
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 766666655544444445566677777778889999999998887653
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.52 E-value=13 Score=33.49 Aligned_cols=222 Identities=15% Similarity=0.048 Sum_probs=147.1
Q ss_pred CChHHHHHHHHHHHHcCCC-CcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHH
Q 037414 172 KDIVMGRLIHDIVLKSGLD-IDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMY 250 (577)
Q Consensus 172 ~~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~ 250 (577)
+....+...+......... .....+......+...+.+..+...+...... . ........+..+...+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---------~~~~~~~~~~~~~~~~ 105 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALEL--E---------LLPNLAEALLNLGLLL 105 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhh--h---------hccchHHHHHHHHHHH
Confidence 3444444555544443321 13566777777888888888888777765431 0 0122344556667777
Q ss_pred HhcCCHHHHHHHHHhccC--CCh-hhHHHHHH-HHHHcCChHHHHHHHHHhhhCCC--CCCHHHHHHHHHHHhccCCHHH
Q 037414 251 AKCGSIDSAREIFDRMRQ--KNV-ISWSAMIA-AYGYHGQGKKALDLFPMMLSSRV--LPNRITFVSLLYACSHTGLVEE 324 (577)
Q Consensus 251 ~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~-~~~~~g~~~~A~~l~~~m~~~g~--~p~~~t~~~ll~a~~~~g~~~~ 324 (577)
...+++..+...+..... ++. ........ .+...|+++.|...+.+...... ......+......+...++.+.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (291)
T COG0457 106 EALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEE 185 (291)
T ss_pred HHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHH
Confidence 778888888888887765 222 22333333 68889999999999999855221 1223344444445677889999
Q ss_pred HHHHHHHhhHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037414 325 GLRLFSSMWDDFAVRP-DVKHYTCMVDLLGRAGRLDEALKLIESM-SVEKD-EGLWGALLGACRIHKNVDLAEMAAKSLL 401 (577)
Q Consensus 325 a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 401 (577)
+...+....+. ... ....+..+...+...+++++|...+... ...|+ ...+..+...+...+..+.+...+.+..
T Consensus 186 a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (291)
T COG0457 186 ALELLEKALKL--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKAL 263 (291)
T ss_pred HHHHHHHHHhh--CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999988743 223 3677788888888899999999988887 44454 3455555555557778999999999999
Q ss_pred hcCCC
Q 037414 402 ERQPQ 406 (577)
Q Consensus 402 ~~~p~ 406 (577)
+..|.
T Consensus 264 ~~~~~ 268 (291)
T COG0457 264 ELDPD 268 (291)
T ss_pred HhCcc
Confidence 88886
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=90.28 E-value=0.56 Score=39.87 Aligned_cols=85 Identities=15% Similarity=0.229 Sum_probs=51.7
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhH
Q 037414 164 VIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILG 243 (577)
Q Consensus 164 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~ 243 (577)
++..+.+.+.+.....+++.+.+.+...+....+.|+..|++.++.++..++++....-|+
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~yd~------------------- 73 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNNYDL------------------- 73 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSSS-C-------------------
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccccCH-------------------
Confidence 4556666677777777777777666556677778888888888777777777764332221
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcc
Q 037414 244 TAVIDMYAKCGSIDSAREIFDRMR 267 (577)
Q Consensus 244 ~~Li~~~~~~g~~~~A~~~~~~~~ 267 (577)
..++..+.+.|.+++|.-++.++.
T Consensus 74 ~~~~~~c~~~~l~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 74 DKALRLCEKHGLYEEAVYLYSKLG 97 (143)
T ss_dssp THHHHHHHTTTSHHHHHHHHHCCT
T ss_pred HHHHHHHHhcchHHHHHHHHHHcc
Confidence 124455555555555555555543
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.87 E-value=2.3 Score=40.27 Aligned_cols=76 Identities=14% Similarity=0.193 Sum_probs=59.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhh-----CCCCCCHHHHHH
Q 037414 240 VILGTAVIDMYAKCGSIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLS-----SRVLPNRITFVS 311 (577)
Q Consensus 240 ~~~~~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t~~~ 311 (577)
..++..++..+..+|+.+.+...++++.. -+...|..+|.+|.+.|+...|+..|+++.. .|+.|-..+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 34667788889999999999999888875 3556899999999999999999999888765 367776665554
Q ss_pred HHHH
Q 037414 312 LLYA 315 (577)
Q Consensus 312 ll~a 315 (577)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4444
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=89.71 E-value=23 Score=35.18 Aligned_cols=148 Identities=11% Similarity=-0.026 Sum_probs=80.2
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC--HH
Q 037414 269 KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLP---NRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD--VK 343 (577)
Q Consensus 269 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~ 343 (577)
....+|..++..+.+.|+++.|...+.++...+..+ +......-....-..|+-++|...++..++. .+... ..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~ 222 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSI 222 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhccccc
Confidence 445678888899999999999999999887754211 2233334455566778888998888877652 11111 11
Q ss_pred HHHHHHHHHHHcCCHHHHHHHH-HhCCCCCCHhHHHHHHHHHHhc------CCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 037414 344 HYTCMVDLLGRAGRLDEALKLI-ESMSVEKDEGLWGALLGACRIH------KNVDLAEMAAKSLLERQPQNPGHYVLLSN 416 (577)
Q Consensus 344 ~~~~li~~~~~~g~~~~A~~~~-~~m~~~p~~~~~~~ll~~~~~~------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 416 (577)
....+...+.. ..+.....- .......-...+..+..-+... ++.+++...|..+.+..|.....|..+..
T Consensus 223 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 223 SNAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred cHHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 11111111100 000000000 0000000011222222223333 77888899999999998887777777666
Q ss_pred HHh
Q 037414 417 VYA 419 (577)
Q Consensus 417 ~~~ 419 (577)
.+.
T Consensus 301 ~~~ 303 (352)
T PF02259_consen 301 FND 303 (352)
T ss_pred HHH
Confidence 654
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=89.53 E-value=16 Score=36.26 Aligned_cols=181 Identities=14% Similarity=0.127 Sum_probs=104.1
Q ss_pred HHHHHhcCCHHHHHHHHHhccC--CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCC---CCC-CHHHHHHHHHHHhcc-
Q 037414 247 IDMYAKCGSIDSAREIFDRMRQ--KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR---VLP-NRITFVSLLYACSHT- 319 (577)
Q Consensus 247 i~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~p-~~~t~~~ll~a~~~~- 319 (577)
..+..+.|+++...+....... ++...+.++... ..|+.+++....+++...- ..+ ....|........+.
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~~~~~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~lq 82 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQSNEDSPEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVKLQ 82 (352)
T ss_pred HHHHHhcCChhhHHHHHhhccCCChhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence 5677788899887777776665 334444444443 7788888888877765531 000 111122222222222
Q ss_pred --CCHHHHHHHHHHhh--------------Hh-cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCCHhHHHHHH
Q 037414 320 --GLVEEGLRLFSSMW--------------DD-FAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMS-VEKDEGLWGALL 381 (577)
Q Consensus 320 --g~~~~a~~~~~~m~--------------~~-~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll 381 (577)
..++++.++..... ++ ....++..++..++..-. -++..+. ......+|..+.
T Consensus 83 ~L~Elee~~~~~~~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~---------~~l~~~~~~~~~~~~~l~~a 153 (352)
T PF02259_consen 83 QLVELEEIIELKSNLSQNPQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRR---------LVLSLILLPEELAETWLKFA 153 (352)
T ss_pred HHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH---------HHHhcccchhHHHHHHHHHH
Confidence 22333333331110 00 012223333333322100 0111111 123455899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCC----CCchhHHHHHHHHhccCChhHHHHHHHHHhhCC
Q 037414 382 GACRIHKNVDLAEMAAKSLLERQP----QNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 382 ~~~~~~g~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
..+++.|.++.|...+.++.+.++ ..+.....-+......|+..+|...++...+..
T Consensus 154 ~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~ 214 (352)
T PF02259_consen 154 KLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCR 214 (352)
T ss_pred HHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 999999999999999999988652 245677778889999999999999998888743
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=89.50 E-value=27 Score=35.80 Aligned_cols=175 Identities=11% Similarity=0.095 Sum_probs=122.1
Q ss_pred cchhhHHHHHHHHHhcCCHHHHHHHHHhccC--CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 037414 238 LDVILGTAVIDMYAKCGSIDSAREIFDRMRQ--KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYA 315 (577)
Q Consensus 238 ~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 315 (577)
.|....-+++..+.+.-+..-.+.+-.+|.. .+-..|..++..|.++ ..++-..+|+++.+.. .|...+..-+.-
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~d--fnDvv~~ReLa~ 140 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYD--FNDVVIGRELAD 140 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc--chhHHHHHHHHH
Confidence 3455566788888888888888888888875 6777899999999999 5678899999998864 344445544444
Q ss_pred HhccCCHHHHHHHHHHhhHhcCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCCHhHHHHHHHHHH
Q 037414 316 CSHTGLVEEGLRLFSSMWDDFAVRPD------VKHYTCMVDLLGRAGRLDEALKLIESM----SVEKDEGLWGALLGACR 385 (577)
Q Consensus 316 ~~~~g~~~~a~~~~~~m~~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~ll~~~~ 385 (577)
+...++.+.+..+|..++.. +-|. .+.|.-++..- ..+.+....+...+ +...-.+.+.-+-.-|.
T Consensus 141 ~yEkik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 141 KYEKIKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHhchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 44558888999999888643 3342 24566555432 34556666665555 33334556666667788
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHh
Q 037414 386 IHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYA 419 (577)
Q Consensus 386 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 419 (577)
...++++|++++..+++.+..+..+-..++.-+.
T Consensus 217 ~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lR 250 (711)
T COG1747 217 ENENWTEAIRILKHILEHDEKDVWARKEIIENLR 250 (711)
T ss_pred cccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHH
Confidence 8999999999999998887666555555554443
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.24 E-value=1.2 Score=42.06 Aligned_cols=102 Identities=11% Similarity=0.127 Sum_probs=76.5
Q ss_pred HcCCCCCHHHHHHHHHHHHcCCChHHHHHHHhcCCCC-------CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC
Q 037414 85 AGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKER-------DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLD 157 (577)
Q Consensus 85 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 157 (577)
..|.+.+..+...++..-....+++++...+-++... +.. -.+.++. +-.-++++++.++..=...|+-||
T Consensus 57 ~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irl-llky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 57 ERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRL-LLKYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred hcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHH-HHccChHHHHHHHhCcchhccccc
Confidence 3455666667777777777778899998888777542 111 1222332 334567799999999899999999
Q ss_pred cchHHHHHHHHhcCCChHHHHHHHHHHHHcC
Q 037414 158 SYTLPFVIRACRDRKDIVMGRLIHDIVLKSG 188 (577)
Q Consensus 158 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 188 (577)
.++++.+|+.+.+.+++..|.++...|+...
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999888877664
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=89.02 E-value=67 Score=39.64 Aligned_cols=311 Identities=11% Similarity=0.026 Sum_probs=167.5
Q ss_pred HHHHHHHcCCChHHHHHHHhcC----CCC--CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhc
Q 037414 97 KLLYIYALHKALTDAHALFNGM----KER--DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRD 170 (577)
Q Consensus 97 ~li~~~~~~g~~~~A~~~f~~m----~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 170 (577)
.|..+-.+++.+..|.-.|++- .+. ...-|-.+...|..-++++....+...-.. .|+ +...+.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s---l~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS---LYQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc---HHHHHHHHHh
Confidence 3444555778888888888873 221 122344444588888888887776654111 122 3334444566
Q ss_pred CCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHH
Q 037414 171 RKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMY 250 (577)
Q Consensus 171 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~ 250 (577)
.|+++.|...|+.+.+.+ ++....++.++..-...|.+..+....+........- ....++.=+.+-
T Consensus 1462 ~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~------------~~~~~s~~~eaa 1528 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEE------------VDELNSLGVEAA 1528 (2382)
T ss_pred hccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhccCHH------------HHHHHHHHHHHH
Confidence 788888888898888765 3336667766666666777777776665554321110 011122234445
Q ss_pred HhcCCHHHHHHHHHhccCCChhhHHHH--HHHHHHcC--ChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 037414 251 AKCGSIDSAREIFDRMRQKNVISWSAM--IAAYGYHG--QGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGL 326 (577)
Q Consensus 251 ~~~g~~~~A~~~~~~~~~~~~~~~~~l--i~~~~~~g--~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 326 (577)
.+.+++|....... ..+..+|.+. +..+.+.. +.-.-.++.+.+.+.-+.| +.+|+..|.+..+.
T Consensus 1529 W~l~qwD~~e~~l~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~--------lsa~s~~~Sy~~~Y 1597 (2382)
T KOG0890|consen 1529 WRLSQWDLLESYLS---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIEN--------LSACSIEGSYVRSY 1597 (2382)
T ss_pred hhhcchhhhhhhhh---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhh--------HHHhhccchHHHHH
Confidence 77888887776655 5556666654 22222222 2111222333333221111 12222222221211
Q ss_pred HHHHHh----------hHhcCCCCCH------HHHHHHH---HHHHHcCCHHHHH-HHHHhCCCCC-----CHhHHHHHH
Q 037414 327 RLFSSM----------WDDFAVRPDV------KHYTCMV---DLLGRAGRLDEAL-KLIESMSVEK-----DEGLWGALL 381 (577)
Q Consensus 327 ~~~~~m----------~~~~~~~p~~------~~~~~li---~~~~~~g~~~~A~-~~~~~m~~~p-----~~~~~~~ll 381 (577)
++.-.+ ....+..++. ..|..-+ +.+.+....=-|. +.+.....+| -..+|-...
T Consensus 1598 ~~~~kLH~l~el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsA 1677 (2382)
T KOG0890|consen 1598 EILMKLHLLLELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSA 1677 (2382)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHH
Confidence 111110 0011222221 1222222 2222211111111 1111111122 234899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCCC
Q 037414 382 GACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRL 439 (577)
Q Consensus 382 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 439 (577)
+.++..|.++.|....-++.+..++ ..+...+......|+-..|..++++-.+...
T Consensus 1678 riaR~aG~~q~A~nall~A~e~r~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1678 RIARLAGHLQRAQNALLNAKESRLP--EIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHHhcccHHHHHHHHHhhhhcccc--hHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 9999999999999998888877744 6888999999999999999999998886543
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.90 E-value=38 Score=36.66 Aligned_cols=165 Identities=8% Similarity=0.049 Sum_probs=83.0
Q ss_pred HHHHHcCCChHHHHHHHhcCCCC-----CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCC
Q 037414 99 LYIYALHKALTDAHALFNGMKER-----DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKD 173 (577)
Q Consensus 99 i~~~~~~g~~~~A~~~f~~m~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 173 (577)
|+-+.+.+.+++|+..-+..... -...+...|..+...|++++|-...-.|... +..-|.-.+.-++..++
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccc
Confidence 45556667777777766655432 1234667777777777777777777666553 33444444444444444
Q ss_pred hHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhc-----CCCCcchhhHHHHHH
Q 037414 174 IVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA-----NKFLLDVILGTAVID 248 (577)
Q Consensus 174 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~-----~g~~~~~~~~~~Li~ 248 (577)
......+ +-......+..+|..++..+.. .+...=.++..+-+ .+..+-.+.+.+ ....-+..+...|+.
T Consensus 439 l~~Ia~~---lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp-~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~ 513 (846)
T KOG2066|consen 439 LTDIAPY---LPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWP-GHLYSVLTIISATEPQIKQNSESTALLEVLAH 513 (846)
T ss_pred cchhhcc---CCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCC-hhhhhhhHHHhhcchHHHhhccchhHHHHHHH
Confidence 3322111 1111111234455555554444 11111111111111 011111111111 011112334455999
Q ss_pred HHHhcCCHHHHHHHHHhccCCChh
Q 037414 249 MYAKCGSIDSAREIFDRMRQKNVI 272 (577)
Q Consensus 249 ~~~~~g~~~~A~~~~~~~~~~~~~ 272 (577)
.|...+++++|..++-..+++++.
T Consensus 514 LYl~d~~Y~~Al~~ylklk~~~vf 537 (846)
T KOG2066|consen 514 LYLYDNKYEKALPIYLKLQDKDVF 537 (846)
T ss_pred HHHHccChHHHHHHHHhccChHHH
Confidence 999999999999999998876554
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=88.62 E-value=9.4 Score=33.12 Aligned_cols=50 Identities=14% Similarity=0.045 Sum_probs=23.7
Q ss_pred HHcCCHHHHHHHHHhCCCCCC---HhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037414 353 GRAGRLDEALKLIESMSVEKD---EGLWGALLGACRIHKNVDLAEMAAKSLLE 402 (577)
Q Consensus 353 ~~~g~~~~A~~~~~~m~~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 402 (577)
...|.+++...-.+.+....+ ...-.+|.-+-.+.|++..|...|+++..
T Consensus 143 vD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 143 VDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 345555555555555421111 12333444444555666666666655544
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.59 E-value=1.9 Score=38.17 Aligned_cols=88 Identities=11% Similarity=0.061 Sum_probs=67.7
Q ss_pred HHHcCCHHHHHHHHHhC-CCCC------CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCCh
Q 037414 352 LGRAGRLDEALKLIESM-SVEK------DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRW 424 (577)
Q Consensus 352 ~~~~g~~~~A~~~~~~m-~~~p------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 424 (577)
+.+.|++++|..-|... ..-| -.+.|..-..++.+.+.++.|+.-..+.++++|....+..--..+|.+..++
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH
Confidence 55678888888777665 1112 1234444456678889999999999999999998877777778899999999
Q ss_pred hHHHHHHHHHhhCCC
Q 037414 425 QDVAKIRDLMTRRRL 439 (577)
Q Consensus 425 ~~A~~~~~~m~~~g~ 439 (577)
++|..-++.+.+...
T Consensus 185 eealeDyKki~E~dP 199 (271)
T KOG4234|consen 185 EEALEDYKKILESDP 199 (271)
T ss_pred HHHHHHHHHHHHhCc
Confidence 999999999887553
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=88.38 E-value=7.1 Score=34.52 Aligned_cols=58 Identities=17% Similarity=0.163 Sum_probs=36.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhccCCCh------hhHHHHHHHHHHcCChHHHHHHHHHhhh
Q 037414 242 LGTAVIDMYAKCGSIDSAREIFDRMRQKNV------ISWSAMIAAYGYHGQGKKALDLFPMMLS 299 (577)
Q Consensus 242 ~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~ 299 (577)
.+..+.+.|++.|+.+.|.+.|.++.+..+ ..+-.+|......+++..+.....+...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455667777777777777777777665321 2355566666666777666666665543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=88.12 E-value=8.6 Score=34.02 Aligned_cols=94 Identities=13% Similarity=0.006 Sum_probs=48.7
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC--cchHHHHHHHHhcCCChHHHHHHHHHHHHcCC---CCc----HHH
Q 037414 125 SWSVMVGGFSKVADFINCFETFREFIRCGMQLD--SYTLPFVIRACRDRKDIVMGRLIHDIVLKSGL---DID----QFV 195 (577)
Q Consensus 125 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~---~~~----~~~ 195 (577)
.+..+..-|++.|+.++|++.|.++.+....|. ...+..++..+...+++..+.....++...-- +++ ..+
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 345555555556666666666655555433332 22344455555555666655555544433211 111 223
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhCC
Q 037414 196 CAALVDMYAKCKVIDDARQLFDQMP 220 (577)
Q Consensus 196 ~~~li~~~~~~g~~~~A~~~~~~m~ 220 (577)
|..|. +...|++.+|-+.|-+..
T Consensus 118 ~~gL~--~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGLA--NLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHH--HHHhchHHHHHHHHHccC
Confidence 33333 234678999888887765
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=87.78 E-value=1.1 Score=27.51 Aligned_cols=24 Identities=13% Similarity=-0.069 Sum_probs=12.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 037414 377 WGALLGACRIHKNVDLAEMAAKSL 400 (577)
Q Consensus 377 ~~~ll~~~~~~g~~~~a~~~~~~~ 400 (577)
|..|...|...|++++|+.++++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444555555555555555555553
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.47 E-value=26 Score=33.18 Aligned_cols=59 Identities=15% Similarity=0.005 Sum_probs=52.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhh
Q 037414 378 GALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTR 436 (577)
Q Consensus 378 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 436 (577)
+.....|...|.+.+|.++.++++..+|-+...+..|++.++..|+--.|.+-++.+.+
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 33446789999999999999999999999999999999999999998888888887754
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=87.22 E-value=1.2 Score=27.25 Aligned_cols=24 Identities=17% Similarity=0.304 Sum_probs=13.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHh
Q 037414 274 WSAMIAAYGYHGQGKKALDLFPMM 297 (577)
Q Consensus 274 ~~~li~~~~~~g~~~~A~~l~~~m 297 (577)
|+.|...|.+.|++++|+++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455555566666666666666553
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=87.13 E-value=4.3 Score=34.82 Aligned_cols=69 Identities=22% Similarity=0.165 Sum_probs=35.6
Q ss_pred HcCCHHHHHHHHHhC-CCCCCHhHHHHHH-HHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccC
Q 037414 354 RAGRLDEALKLIESM-SVEKDEGLWGALL-GACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAG 422 (577)
Q Consensus 354 ~~g~~~~A~~~~~~m-~~~p~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 422 (577)
+.++.+++..+++.+ -++|.......+- ..+...|++.+|.++++.+.+..|..+..-..+..++...|
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~ 92 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALG 92 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcC
Confidence 456666666666666 2344433222221 12456667777777777766555555443333433333333
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.94 E-value=18 Score=39.29 Aligned_cols=118 Identities=17% Similarity=0.128 Sum_probs=75.4
Q ss_pred HHHHHHHHHcCCChHHHHHHHhcCCCCCcchHHHH----HHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhc
Q 037414 95 ANKLLYIYALHKALTDAHALFNGMKERDSVSWSVM----VGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRD 170 (577)
Q Consensus 95 ~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~l----i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 170 (577)
...-+++..+...++.|..+-+.-.. |...-..+ .+-+-+.|++++|...|-+-... +.|. .++.-+..
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLd 409 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLD 409 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcC
Confidence 34556777777788888877765433 22222222 23445678888888887665543 3332 24555555
Q ss_pred CCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCC
Q 037414 171 RKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMP 220 (577)
Q Consensus 171 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 220 (577)
......--.+++.+.+.|+. +...-+.|+.+|.+.++.++-.+..+...
T Consensus 410 aq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 55555556677777788754 44556778888888888888887777665
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.82 E-value=2.9 Score=39.71 Aligned_cols=98 Identities=13% Similarity=0.172 Sum_probs=71.0
Q ss_pred CCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC-------CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHH
Q 037414 236 FLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ-------KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRIT 308 (577)
Q Consensus 236 ~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 308 (577)
.+....+...++..-....+++++...+-++.. ++...+ +.+..+. .-++++++.++..=+..|+-||..|
T Consensus 60 ~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 60 LPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHHH-ccChHHHHHHHhCcchhccccchhh
Confidence 333444555566666667788888888777753 222211 2233222 3467899999999999999999999
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhhHh
Q 037414 309 FVSLLYACSHTGLVEEGLRLFSSMWDD 335 (577)
Q Consensus 309 ~~~ll~a~~~~g~~~~a~~~~~~m~~~ 335 (577)
++.+++.+.+.+++.+|.++...|...
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 999999999999999999888777654
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=86.80 E-value=24 Score=34.49 Aligned_cols=127 Identities=17% Similarity=0.065 Sum_probs=62.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHhhhCCC-----CCCHHHHHHHHHHHhccCCHHHHHHHHHHhh---HhcCCCCCHHHHHH
Q 037414 276 AMIAAYGYHGQGKKALDLFPMMLSSRV-----LPNRITFVSLLYACSHTGLVEEGLRLFSSMW---DDFAVRPDVKHYTC 347 (577)
Q Consensus 276 ~li~~~~~~g~~~~A~~l~~~m~~~g~-----~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~---~~~~~~p~~~~~~~ 347 (577)
+|..++...+.++++++.|+...+.-- ......+..|-+.|.+..+.++|.-+..... ..++++.-..-|.+
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 344555555566666666665543211 1112345556666666666666554443322 22233222222332
Q ss_pred H-----HHHHHHcCCHHHHHHHHHhC-------CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037414 348 M-----VDLLGRAGRLDEALKLIESM-------SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLE 402 (577)
Q Consensus 348 l-----i~~~~~~g~~~~A~~~~~~m-------~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 402 (577)
+ .-+|...|++.+|.+.-++. +.+| -......+...|+..|+.+.|..-++++..
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 2 23455556555555444432 3222 122445556667777777777776666543
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=86.63 E-value=31 Score=33.12 Aligned_cols=80 Identities=9% Similarity=0.012 Sum_probs=37.2
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCCh----hHHHHHHHHHHHCCCCCCcchHHHH
Q 037414 89 LTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADF----INCFETFREFIRCGMQLDSYTLPFV 164 (577)
Q Consensus 89 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~p~~~t~~~l 164 (577)
.+|..+.-..+..+...|..+-...+..-+..+|...-...+.++.+-|+. .+++..+..+... .|+...-...
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A 111 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASA 111 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHH
Confidence 445555555555565555433333333323334555545555556665553 3455555555322 2343333344
Q ss_pred HHHHhc
Q 037414 165 IRACRD 170 (577)
Q Consensus 165 l~~~~~ 170 (577)
+.+++.
T Consensus 112 ~~aLG~ 117 (280)
T PRK09687 112 INATGH 117 (280)
T ss_pred HHHHhc
Confidence 444433
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=86.58 E-value=2 Score=27.71 Aligned_cols=27 Identities=7% Similarity=0.279 Sum_probs=14.6
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHH
Q 037414 125 SWSVMVGGFSKVADFINCFETFREFIR 151 (577)
Q Consensus 125 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 151 (577)
.|..+...|.+.|++++|.++|++.++
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455555555555555555555555
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=86.55 E-value=1.5 Score=26.26 Aligned_cols=31 Identities=16% Similarity=0.004 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 037414 376 LWGALLGACRIHKNVDLAEMAAKSLLERQPQ 406 (577)
Q Consensus 376 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 406 (577)
+|..+...+...|+.++|...+++.++.+|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4556666677777777777777777777663
|
... |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=86.54 E-value=4.4 Score=34.19 Aligned_cols=52 Identities=12% Similarity=0.066 Sum_probs=28.3
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCC
Q 037414 387 HKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 387 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
.++.++++.+++.+.-+.|+.+..-..-...+...|+|++|.+++++..+.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 4555555555555555555555554455555555555555555555554443
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=86.43 E-value=13 Score=28.96 Aligned_cols=61 Identities=20% Similarity=0.243 Sum_probs=41.3
Q ss_pred HHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHH
Q 037414 247 IDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFV 310 (577)
Q Consensus 247 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 310 (577)
+..+.+.|++++|..+.+.+.-||...|-++-.. +.|..+++..-+.+|..+| .|...+|.
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 3445677888888888888877888888766543 4566666666676776665 44444444
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.42 E-value=53 Score=35.62 Aligned_cols=129 Identities=11% Similarity=0.129 Sum_probs=81.2
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhc
Q 037414 91 NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRD 170 (577)
Q Consensus 91 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 170 (577)
-..++...|+.+.-.|++++|-.+.-.|...+..-|.--+..+...++......+ +.......+...|..++..+..
T Consensus 391 i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 391 IKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred hHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 3457888899999999999999998888888888888888888877776544333 2221111234455555555544
Q ss_pred CCChHHH--------------HH----HHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChh
Q 037414 171 RKDIVMG--------------RL----IHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLV 225 (577)
Q Consensus 171 ~~~~~~a--------------~~----~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 225 (577)
.+...- .. +..+..+. .-+......|+..|...+++.+|..++-...+.++.
T Consensus 468 -~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~--Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~vf 537 (846)
T KOG2066|consen 468 -SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQN--SESTALLEVLAHLYLYDNKYEKALPIYLKLQDKDVF 537 (846)
T ss_pred -HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhh--ccchhHHHHHHHHHHHccChHHHHHHHHhccChHHH
Confidence 111110 00 01111111 112234455999999999999999999888776543
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=86.20 E-value=1.3 Score=26.76 Aligned_cols=32 Identities=9% Similarity=0.075 Sum_probs=24.9
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHH
Q 037414 181 HDIVLKSGLDIDQFVCAALVDMYAKCKVIDDAR 213 (577)
Q Consensus 181 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 213 (577)
+++.++.. |.+..+|+.|..+|...|++++|+
T Consensus 2 y~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 34555554 667889999999999999999886
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=86.19 E-value=31 Score=33.40 Aligned_cols=131 Identities=8% Similarity=0.139 Sum_probs=71.8
Q ss_pred hHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhc--cC----CHHHHHHHHHHhhHhcCCC--CCHHHHHHHHHHHHHcCCH
Q 037414 287 GKKALDLFPMMLSSRVLPNRITFVSLLYACSH--TG----LVEEGLRLFSSMWDDFAVR--PDVKHYTCMVDLLGRAGRL 358 (577)
Q Consensus 287 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~--~g----~~~~a~~~~~~m~~~~~~~--p~~~~~~~li~~~~~~g~~ 358 (577)
+++.+.+++.|.+.|++-+..+|.+....... .. ...++..+|+.|.+++.+- ++...+..|+.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44567788899999998888777654333322 22 3567899999998776553 334455555433 33333
Q ss_pred ----HHHHHHHHhC---CCCC-CH-hHHHHHHHHHHhcCC--HHHHHHHHHHHHhcCCCCchhHHHHHHHHh
Q 037414 359 ----DEALKLIESM---SVEK-DE-GLWGALLGACRIHKN--VDLAEMAAKSLLERQPQNPGHYVLLSNVYA 419 (577)
Q Consensus 359 ----~~A~~~~~~m---~~~p-~~-~~~~~ll~~~~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 419 (577)
+.++.+|+.+ ++.. |. .....++..+..... ...+.++++.+.+.+..-...+...+..++
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHH
Confidence 3344555544 4333 33 344444443332222 346677777777776432233333333333
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=85.15 E-value=46 Score=33.74 Aligned_cols=195 Identities=14% Similarity=0.134 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHH-HHHHhcCCCCcchhhHHHHHHHHHh----cCCHHHHHHHHHhccC
Q 037414 194 FVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTW-TVMIGANKFLLDVILGTAVIDMYAK----CGSIDSAREIFDRMRQ 268 (577)
Q Consensus 194 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~i~~~g~~~~~~~~~~Li~~~~~----~g~~~~A~~~~~~~~~ 268 (577)
.++..++....+.++...|.+.+.-+..-|+..| . ..+-.. -..|.++.+. .-+..+=..+++....
T Consensus 299 ~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs-----~Kllls---~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs 370 (549)
T PF07079_consen 299 DRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVS-----EKLLLS---PKVLQDIVCEDDESYTKLRDYLNLWEEIQS 370 (549)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhh-----hhhhcC---HHHHHHHHhcchHHHHHHHHHHHHHHHHHh
Confidence 4567777778888888888777665543222211 1 001011 1122222221 1122223344444443
Q ss_pred CCh-----hhHHHH-HHHHHHcCC-hHHHHHHHHHhhhCCCCCC-HH----HHHHHHHHHhcc---CCHHHHHHHHHHhh
Q 037414 269 KNV-----ISWSAM-IAAYGYHGQ-GKKALDLFPMMLSSRVLPN-RI----TFVSLLYACSHT---GLVEEGLRLFSSMW 333 (577)
Q Consensus 269 ~~~-----~~~~~l-i~~~~~~g~-~~~A~~l~~~m~~~g~~p~-~~----t~~~ll~a~~~~---g~~~~a~~~~~~m~ 333 (577)
.|+ +.|-.- ..-+=+.|. -++|+++++...+- .|. .. ++..+=.+|.++ ..+.+-..+-+-+
T Consensus 371 ~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi- 447 (549)
T PF07079_consen 371 YDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQF--TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFI- 447 (549)
T ss_pred hcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH-
Confidence 332 122111 122333444 66777777777653 222 22 222222233322 2233333333333
Q ss_pred HhcCCCCC----HHHHHHHHHH--HHHcCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 037414 334 DDFAVRPD----VKHYTCMVDL--LGRAGRLDEALKLIESM-SVEKDEGLWGALLGACRIHKNVDLAEMAAKS 399 (577)
Q Consensus 334 ~~~~~~p~----~~~~~~li~~--~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 399 (577)
++.|+.|- .+.-|.|.++ +-..|++.++.-.-.-+ .+.|++.+|..+.-......++++|..++..
T Consensus 448 ~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 448 TEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 44577663 4555666654 44567777776433333 4567777777777777777777777777654
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=84.89 E-value=6.7 Score=30.62 Aligned_cols=48 Identities=17% Similarity=0.218 Sum_probs=33.7
Q ss_pred CCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 037414 368 MSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLS 415 (577)
Q Consensus 368 m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 415 (577)
+.+-|++.+..+.+.+|++.+|+..|.++++-+...-.+....|-.++
T Consensus 39 ~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l 86 (108)
T PF02284_consen 39 YDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL 86 (108)
T ss_dssp SSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred cccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 356789999999999999999999999999988776544444665554
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=84.60 E-value=6.6 Score=30.30 Aligned_cols=48 Identities=17% Similarity=0.213 Sum_probs=35.7
Q ss_pred CCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 037414 368 MSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLS 415 (577)
Q Consensus 368 m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 415 (577)
+.+-|++.+..+.+++|++.+|+..|.++++-+...-..+...|-.++
T Consensus 36 ~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~l 83 (103)
T cd00923 36 YDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYIL 83 (103)
T ss_pred cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHH
Confidence 356788888999999999999999999999887755433444554443
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=84.52 E-value=8.2 Score=30.14 Aligned_cols=62 Identities=13% Similarity=0.225 Sum_probs=44.5
Q ss_pred hHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHH
Q 037414 287 GKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVD 350 (577)
Q Consensus 287 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 350 (577)
.-+..+-++.+....+.|++....+.+.||.+.+++..|.++|+.+..+.+ +....|..+++
T Consensus 26 ~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 26 GWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 346677777777788899999999999999999999999999998866544 33337777664
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=84.05 E-value=70 Score=34.91 Aligned_cols=52 Identities=8% Similarity=-0.035 Sum_probs=23.6
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHH
Q 037414 383 ACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLM 434 (577)
Q Consensus 383 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 434 (577)
.....++++.+...+..|-+.....+..+.-+.+++...|+.++|..+|+..
T Consensus 321 ~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 321 MALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3334455554444444443222223334444555544455555555555444
|
|
| >KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=83.41 E-value=42 Score=33.26 Aligned_cols=105 Identities=17% Similarity=0.265 Sum_probs=77.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHH------------HHHHHhcCCHHHHHHHHHHHHhcCCCC------
Q 037414 346 TCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGAL------------LGACRIHKNVDLAEMAAKSLLERQPQN------ 407 (577)
Q Consensus 346 ~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l------------l~~~~~~g~~~~a~~~~~~~~~~~p~~------ 407 (577)
..|.+.+-.+|++++|..++.+.+++ ||.++ ++.|...+|+-.|.-+-+++....-+.
T Consensus 135 k~L~~ike~~Gdi~~Aa~il~el~VE----Tygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~l 210 (439)
T KOG1498|consen 135 KMLAKIKEEQGDIAEAADILCELQVE----TYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQEL 210 (439)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhcchh----hhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHH
Confidence 34566777899999999999988643 33332 467888999999998888887654222
Q ss_pred -chhHHHHHHHHhccCChhHHHHHHHHHhhCCCccCCceeEEEECCEE
Q 037414 408 -PGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKI 454 (577)
Q Consensus 408 -~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~s~~~~~~~~ 454 (577)
...|..++....+.+.+=.+-+.++..-+-|-.+.....|+.+...+
T Consensus 211 KlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~i 258 (439)
T KOG1498|consen 211 KLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRSI 258 (439)
T ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhhh
Confidence 24688999999999999999999999988776555445576654433
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.33 E-value=35 Score=30.94 Aligned_cols=179 Identities=15% Similarity=0.133 Sum_probs=100.0
Q ss_pred CCHHHHHHHHHhcc--CCC-hhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 037414 254 GSIDSAREIFDRMR--QKN-VISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFS 330 (577)
Q Consensus 254 g~~~~A~~~~~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 330 (577)
|-++-|+-=|.+.. .|+ +..||-+.-.+...|+++.|.+.|+...+....-+-...|.-| ++--.|++.-|.+-+.
T Consensus 79 GL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~ 157 (297)
T COG4785 79 GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLL 157 (297)
T ss_pred hHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHH
Confidence 44444444444432 233 4578888888889999999999999888764333322333222 3334578887776555
Q ss_pred HhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--
Q 037414 331 SMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALK-LIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQN-- 407 (577)
Q Consensus 331 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~-~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-- 407 (577)
..-+.-.-.|-...|--++. +.-++.+|.. +.++.. ..|..-|...|-.+--..-.+ +.+++++.+.-.++
T Consensus 158 ~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yLgkiS~--e~l~~~~~a~a~~n~~ 231 (297)
T COG4785 158 AFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYLGKISE--ETLMERLKADATDNTS 231 (297)
T ss_pred HHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHHhhccH--HHHHHHHHhhccchHH
Confidence 54332122232333333332 3345666654 334432 334455555444432211111 22333333322222
Q ss_pred -----chhHHHHHHHHhccCChhHHHHHHHHHhhCCC
Q 037414 408 -----PGHYVLLSNVYANAGRWQDVAKIRDLMTRRRL 439 (577)
Q Consensus 408 -----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 439 (577)
.++|.-|..-|...|+.++|..+|+.....++
T Consensus 232 ~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 232 LAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 46899999999999999999999987765443
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=83.12 E-value=9.4 Score=29.50 Aligned_cols=63 Identities=13% Similarity=0.239 Sum_probs=48.0
Q ss_pred ChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHH
Q 037414 286 QGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVD 350 (577)
Q Consensus 286 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 350 (577)
+.-++.+-++.+....+.|++....+.+.||.+.+++..|.++|+....+.| .+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 4456777777777778889999999999999999999999999998854433 34556666654
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=83.04 E-value=11 Score=31.93 Aligned_cols=65 Identities=18% Similarity=0.288 Sum_probs=36.4
Q ss_pred hccCCHHHHHHHHHHhhHhcCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHhCCCCC-CHhHHHHHHHHHHh
Q 037414 317 SHTGLVEEGLRLFSSMWDDFAVRPDV---KHYTCMVDLLGRAGRLDEALKLIESMSVEK-DEGLWGALLGACRI 386 (577)
Q Consensus 317 ~~~g~~~~a~~~~~~m~~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~p-~~~~~~~ll~~~~~ 386 (577)
...++.+++..+++.|. -+.|+. .++... .+.+.|++++|.++|++..-.+ ....-..|+..|..
T Consensus 21 L~~~d~~D~e~lLdALr---vLrP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~ 89 (153)
T TIGR02561 21 LRSADPYDAQAMLDALR---VLRPNLKELDMFDGW--LLIARGNYDEAARILRELLSSAGAPPYGKALLALCLN 89 (153)
T ss_pred HhcCCHHHHHHHHHHHH---HhCCCccccchhHHH--HHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence 34677777777777774 345542 333333 3567777888888887773232 33333344444443
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.02 E-value=39 Score=35.48 Aligned_cols=139 Identities=17% Similarity=0.101 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccCCChhh
Q 037414 194 FVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVIS 273 (577)
Q Consensus 194 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~ 273 (577)
...+.++..+.+.|..++|+++-..-.+ --+...+.|+++.|.++..+. .+..-
T Consensus 615 ~~rt~va~Fle~~g~~e~AL~~s~D~d~------------------------rFelal~lgrl~iA~~la~e~--~s~~K 668 (794)
T KOG0276|consen 615 EIRTKVAHFLESQGMKEQALELSTDPDQ------------------------RFELALKLGRLDIAFDLAVEA--NSEVK 668 (794)
T ss_pred hhhhhHHhHhhhccchHhhhhcCCChhh------------------------hhhhhhhcCcHHHHHHHHHhh--cchHH
Confidence 3456677777777777777765221111 133455778888887776553 45667
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHH
Q 037414 274 WSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLG 353 (577)
Q Consensus 274 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~ 353 (577)
|..|..+..+.|++..|.+.|.+... |..|+-.+...|+-+.-..+-... ++.|. .|...-+|.
T Consensus 669 w~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~-~~~g~------~N~AF~~~~ 732 (794)
T KOG0276|consen 669 WRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLA-KKQGK------NNLAFLAYF 732 (794)
T ss_pred HHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHH-Hhhcc------cchHHHHHH
Confidence 88999999999999999988887654 445666666777765444444443 22232 223334566
Q ss_pred HcCCHHHHHHHHHhCCCCCCH
Q 037414 354 RAGRLDEALKLIESMSVEKDE 374 (577)
Q Consensus 354 ~~g~~~~A~~~~~~m~~~p~~ 374 (577)
..|+++++.+++.+-+.-|..
T Consensus 733 l~g~~~~C~~lLi~t~r~peA 753 (794)
T KOG0276|consen 733 LSGDYEECLELLISTQRLPEA 753 (794)
T ss_pred HcCCHHHHHHHHHhcCcCcHH
Confidence 788899988888877544443
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=81.81 E-value=3 Score=24.51 Aligned_cols=27 Identities=22% Similarity=0.149 Sum_probs=16.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 037414 380 LLGACRIHKNVDLAEMAAKSLLERQPQ 406 (577)
Q Consensus 380 ll~~~~~~g~~~~a~~~~~~~~~~~p~ 406 (577)
+..++...|+.++|.+.++++++..|+
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 344455566666666666666666664
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=81.70 E-value=23 Score=35.87 Aligned_cols=83 Identities=8% Similarity=0.026 Sum_probs=36.0
Q ss_pred HHcCCHHHHHHHHHhC--CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHH
Q 037414 353 GRAGRLDEALKLIESM--SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKI 430 (577)
Q Consensus 353 ~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 430 (577)
...|.++.+...+... -+.....+...+++.....|++++|....+.|+..+..+++........-...|-++++...
T Consensus 334 ~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~ 413 (831)
T PRK15180 334 SHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHY 413 (831)
T ss_pred HHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHH
Confidence 3444555554444433 11123334444445455555555555555555444433333332222223333444555555
Q ss_pred HHHHh
Q 037414 431 RDLMT 435 (577)
Q Consensus 431 ~~~m~ 435 (577)
++++.
T Consensus 414 wk~~~ 418 (831)
T PRK15180 414 WKRVL 418 (831)
T ss_pred HHHHh
Confidence 54444
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=81.70 E-value=23 Score=33.68 Aligned_cols=56 Identities=9% Similarity=0.198 Sum_probs=25.4
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhCC----CCCCHhHHHHHHHHHHhcCCHH
Q 037414 336 FAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMS----VEKDEGLWGALLGACRIHKNVD 391 (577)
Q Consensus 336 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~p~~~~~~~ll~~~~~~g~~~ 391 (577)
++-.++..+...+++.+++.+++.+-.++++... -..|...|..+|..-...||..
T Consensus 196 ~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~ 255 (292)
T PF13929_consen 196 FSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQE 255 (292)
T ss_pred cccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHH
Confidence 3344444444555555555555555555544431 1113344444444444444433
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=81.03 E-value=3.1 Score=24.83 Aligned_cols=27 Identities=22% Similarity=0.299 Sum_probs=14.9
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHhhh
Q 037414 273 SWSAMIAAYGYHGQGKKALDLFPMMLS 299 (577)
Q Consensus 273 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 299 (577)
+|..+...|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455555555666666666666655554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=80.93 E-value=54 Score=31.44 Aligned_cols=157 Identities=12% Similarity=0.065 Sum_probs=84.3
Q ss_pred hHHHHHHHHHHcCChH---HHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHH
Q 037414 273 SWSAMIAAYGYHGQGK---KALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMV 349 (577)
Q Consensus 273 ~~~~li~~~~~~g~~~---~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 349 (577)
+...++.+|...+..+ +|..+++.+...... ....+..-+..+.+.++.+.+.+.+..|+.... -....+...+
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~--~~e~~~~~~l 162 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD--HSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc--cccchHHHHH
Confidence 5667788888877654 566677777554222 234454566777778999999999999987533 1223333333
Q ss_pred HH---HHHcCCHHHHHHHHHhC---CCCCCHh-HHHH-HHHH---HHhcCC------HHHHHHHHHHHHhc--CCCCchh
Q 037414 350 DL---LGRAGRLDEALKLIESM---SVEKDEG-LWGA-LLGA---CRIHKN------VDLAEMAAKSLLER--QPQNPGH 410 (577)
Q Consensus 350 ~~---~~~~g~~~~A~~~~~~m---~~~p~~~-~~~~-ll~~---~~~~g~------~~~a~~~~~~~~~~--~p~~~~~ 410 (577)
.. +.... ...|...++.+ .+.|... .... ++.. ....++ ++....+++.+.+. .|-++.+
T Consensus 163 ~~i~~l~~~~-~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~ 241 (278)
T PF08631_consen 163 HHIKQLAEKS-PELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEA 241 (278)
T ss_pred HHHHHHHhhC-cHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 33 34333 34555555444 2233322 1111 1111 122222 34444445533332 2334333
Q ss_pred HHHH-------HHHHhccCChhHHHHHHHH
Q 037414 411 YVLL-------SNVYANAGRWQDVAKIRDL 433 (577)
Q Consensus 411 ~~~l-------~~~~~~~g~~~~A~~~~~~ 433 (577)
-..+ +..+.+.++|++|.+.++.
T Consensus 242 ~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 242 ASAIHTLLWNKGKKHYKAKNYDEAIEWYEL 271 (278)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 2222 3346678999999998874
|
It is also involved in sporulation []. |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.86 E-value=46 Score=30.61 Aligned_cols=89 Identities=15% Similarity=0.240 Sum_probs=47.2
Q ss_pred CCHHHHHHHHHHhhHhcC-CCCCHHHHHHHHH---HHHHcCCHHHHHHHHHhC---CCCCCHhHHHH---HHHH--HHhc
Q 037414 320 GLVEEGLRLFSSMWDDFA-VRPDVKHYTCMVD---LLGRAGRLDEALKLIESM---SVEKDEGLWGA---LLGA--CRIH 387 (577)
Q Consensus 320 g~~~~a~~~~~~m~~~~~-~~p~~~~~~~li~---~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~---ll~~--~~~~ 387 (577)
.++++|+..++..-+-+. -..+...--+++. .-+..+++.+|.++|++. .+..+..-|.. ++.+ |.-.
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~ 207 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLC 207 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHh
Confidence 445555555555532221 1122222223333 334678889999999887 22333333322 2222 3333
Q ss_pred -CCHHHHHHHHHHHHhcCCCCc
Q 037414 388 -KNVDLAEMAAKSLLERQPQNP 408 (577)
Q Consensus 388 -g~~~~a~~~~~~~~~~~p~~~ 408 (577)
.|.-.+.+.+++-.+.+|.-.
T Consensus 208 ~~D~v~a~~ALeky~~~dP~F~ 229 (288)
T KOG1586|consen 208 KADEVNAQRALEKYQELDPAFT 229 (288)
T ss_pred cccHHHHHHHHHHHHhcCCccc
Confidence 666677788888888888743
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=80.75 E-value=70 Score=32.64 Aligned_cols=112 Identities=11% Similarity=0.061 Sum_probs=76.4
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHH
Q 037414 73 IFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKE---RDSVSWSVMVGGFSKVADFINCFETFREF 149 (577)
Q Consensus 73 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m 149 (577)
....+++++.+.+..-.|+....-+.| +...|+++.+.+.+..... ....+-..+++...+.|++++|..+-.-|
T Consensus 306 ~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~ 383 (831)
T PRK15180 306 IAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMM 383 (831)
T ss_pred HHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHH
Confidence 455677777777665566655554443 5567999999998876644 35567788899999999999999999888
Q ss_pred HHCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 037414 150 IRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKS 187 (577)
Q Consensus 150 ~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 187 (577)
+...++ +..............+-++++...++++...
T Consensus 384 l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 384 LSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred hccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 877655 3333333333334456677777777776654
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.09 E-value=50 Score=30.58 Aligned_cols=53 Identities=21% Similarity=0.146 Sum_probs=23.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhhhCC---CCCCHHHHHHHHHHHhccCCHHHHHH
Q 037414 274 WSAMIAAYGYHGQGKKALDLFPMMLSSR---VLPNRITFVSLLYACSHTGLVEEGLR 327 (577)
Q Consensus 274 ~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~p~~~t~~~ll~a~~~~g~~~~a~~ 327 (577)
|-+.|-.|....++..|...++.--+.+ -.-|..+...||.+|- .|+.++...
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~k 248 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKK 248 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHH
Confidence 3334444444555555555555532221 1122334555555542 344444443
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=80.08 E-value=1.3 Score=37.58 Aligned_cols=53 Identities=15% Similarity=0.129 Sum_probs=26.6
Q ss_pred HHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 037414 278 IAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFS 330 (577)
Q Consensus 278 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 330 (577)
|..+.+.+.+.....+++.+...+...+....+.++..|++.+..++..++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 44444455555555555555554444445555555555555554444444444
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 66.4 bits (161), Expect = 2e-11
Identities = 76/585 (12%), Positives = 179/585 (30%), Gaps = 162/585 (27%)
Query: 39 PMNPRVPMQMGPDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKL 98
P + +M + D + + + + N+ +++ A L L A +
Sbjct: 102 QRQPSMMTRM-----YIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA---LLELRPAKNV 153
Query: 99 LYIYALH------K-ALTDAHALFNGMKER--DSVSWSVMVGGFSKVADFINCFETFREF 149
L + K + L ++ + + W + + + + +
Sbjct: 154 L----IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW-LNLKNCNSPETVLEMLQKLLYQ 208
Query: 150 IRCGM--QLD-SYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDI--DQFVC-AALVDMY 203
I + D S + I + + RL+ ++ L + + V A + +
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELR----RLLKSKPYENCLLVLLN--VQNAKAWNAF 262
Query: 204 A-KCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREI 262
CK++ + TR K + D + + S+D
Sbjct: 263 NLSCKIL---------LTTRF-----------KQVTDFLSAATTTHI-----SLDHHSMT 297
Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRV--LPNRITFVSLLYACSHTG 320
+ L L R LP + +
Sbjct: 298 LTP----------------------DEVKSLLLKYLDCRPQDLPREVLTTNPR----RLS 331
Query: 321 LVEEGLRLFSSMWDDFAVRPDVKHYTCM---------VDLLGRAGRLDEALKLIESMSV- 370
++ E +R + WD++ KH C +++L E K+ + +SV
Sbjct: 332 IIAESIRDGLATWDNW------KHVNCDKLTTIIESSLNVL----EPAEYRKMFDRLSVF 381
Query: 371 EKD--------EGLWGALLGACRIHKNVDLAEMAAKSLLERQPQN-----PGHYVLLSNV 417
+W ++ + + V + ++ SL+E+QP+ P Y+ L
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVM---VVVNKLHKYSLVEKQPKESTISIPSIYLELKVK 438
Query: 418 YANAGRWQDVAKIRDLMTRRRL-KKIPGWTWI--EVENKIHQFSVG----DSTHPQSEEI 470
N + A R ++ + K I ++ + +G + HP+ +
Sbjct: 439 LEN-----EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH-IGHHLKNIEHPERMTL 492
Query: 471 YRMLVT----LSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGT 526
+RM+ L +K+ + + + + +++K Y I +
Sbjct: 493 FRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLK---FYK---------PYICDNDPK 540
Query: 527 HIR----IMKNLRVCGDC-----HSFIKHVSAITRRVIIVRDANR 562
+ R I+ L + ++ + ++ + I +A++
Sbjct: 541 YERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHK 585
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 2e-04
Identities = 50/392 (12%), Positives = 121/392 (30%), Gaps = 103/392 (26%)
Query: 189 LDID----QFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGT 244
+D + Q+ ++ ++ +D+ FD +D+ IL
Sbjct: 7 MDFETGEHQYQYKDILSVFED-AFVDN----FDCKDVQDM-------------PKSILSK 48
Query: 245 AVID-MYAKCGSIDSAREIFDRMR--QKNVI------------SWSAMIAAYGYHGQGKK 289
ID + ++ +F + Q+ ++ + +++ +
Sbjct: 49 EEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF--LMSPIKTEQRQPS 106
Query: 290 AL-DLF-----PMMLSSRVLP----NRITFVSLLYAC-----SHTGLVEEGLR------L 328
+ ++ + ++V +R+ L ++ +G+ +
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV 166
Query: 329 FSSMWDDFAVR---PDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACR 385
+ + V+ + ++ L + L++++ + + D +
Sbjct: 167 ALDVCLSYKVQCKMDFKIFW---LN-LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222
Query: 386 IHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQ--DV-AKIRDLMTRRRLKKI 442
I + + + LL + ++L NV NA W ++ KI L+T R
Sbjct: 223 IKLRIHSIQAELRRLL-KSKPYENCLLVLLNVQ-NAKAWNAFNLSCKI--LLTTRF---- 274
Query: 443 PGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLEL-AGYIPDTNFELHDVDEEV 501
+V + + S +TH + L T E L Y+ + D+ EV
Sbjct: 275 -----KQVTDFL---SAATTTHISLDHHSMTL-TPDEVKSLLLKYL---DCRPQDLPREV 322
Query: 502 KVGNLYSHSEKLAIAFGLIATPEGTHIRIMKN 533
N ++ +I IR
Sbjct: 323 LTTNP------RRLS--II----AESIRDGLA 342
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 64.1 bits (154), Expect = 8e-11
Identities = 22/200 (11%), Positives = 62/200 (31%), Gaps = 14/200 (7%)
Query: 160 TLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQM 219
L +++ + + + + ++ L Q A + A L
Sbjct: 94 QLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVH 153
Query: 220 PTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQK----NVISWS 275
+ + LL + + AV+ +A+ G+ + ++ +++S++
Sbjct: 154 HGQ---------RQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204
Query: 276 AMIAAYGYHGQGKKAL-DLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWD 334
A + G Q + M + + LL +++ ++ +
Sbjct: 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSL 264
Query: 335 DFAVRPDVKHYTCMVDLLGR 354
+ P V + D+ +
Sbjct: 265 PPQLPPPVNTSKLLRDVYAK 284
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 63.7 bits (153), Expect = 1e-10
Identities = 13/134 (9%), Positives = 41/134 (30%), Gaps = 7/134 (5%)
Query: 245 AVIDMYAKCGSIDSAREIFDRMRQK-------NVISWSAMIAAYGYHGQGKKALDLFPMM 297
A + A + + + ++A++ + G K+ + + M+
Sbjct: 132 AFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMV 191
Query: 298 LSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGR 357
+ + P+ +++ + L + ++ ++ RA
Sbjct: 192 KDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATV 251
Query: 358 LDEALKLIESMSVE 371
L K+ + S+
Sbjct: 252 LKAVHKVKPTFSLP 265
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 52.1 bits (124), Expect = 2e-07
Identities = 23/183 (12%), Positives = 51/183 (27%), Gaps = 14/183 (7%)
Query: 250 YAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITF 309
Y + + + H + + +S V TF
Sbjct: 44 YLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTF 103
Query: 310 VSLL-YACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM 368
+ + + + LR ++ V +L + RLD A K ++ M
Sbjct: 104 LLMAASIYFYDQNPDAALRTLHQG-------DSLECMAMTVQILLKLDRLDLARKELKKM 156
Query: 369 SVEKDEGLWGALLGACRIH-----KNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGR 423
++DE L + + + A + + ++ + + GR
Sbjct: 157 -QDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGR 215
Query: 424 WQD 426
W+
Sbjct: 216 WEA 218
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 9e-04
Identities = 27/186 (14%), Positives = 53/186 (28%), Gaps = 13/186 (6%)
Query: 250 YAKCGSIDSAREIFDRMRQKNVISWSAMIA-AYGYHGQGKKALDLFPMMLSSRVLPNRIT 308
Y + D A+E + + + A + + DL + S
Sbjct: 210 YTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAA 269
Query: 309 FVSLLY-----ACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALK 363
F+ LY SH + SS+ C D L R + L
Sbjct: 270 FLRSLYMLKLNKTSHEDELRRAEDYLSSINGLE---KSSDLLLCKADTLFVRSRFIDVLA 326
Query: 364 LIESMSVEKDEGLWGAL--LGACRIH-KNVDLAEMAAKSLLERQPQNPGHYVLLSNVYAN 420
+ + +E D A + + + L++R P+ ++ + Y
Sbjct: 327 ITTKI-LEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLC 385
Query: 421 AGRWQD 426
+ +
Sbjct: 386 VNKISE 391
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 577 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.95 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.91 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.88 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.88 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.86 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.85 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.84 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.83 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.81 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.78 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.78 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.77 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.74 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.74 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.73 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.71 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.7 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.7 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.7 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.7 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.69 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.69 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.69 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.67 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.67 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.66 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.65 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.65 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.61 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.58 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.56 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.56 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.54 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.53 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.51 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.51 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.49 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.49 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.48 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.48 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.47 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.47 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.45 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.45 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.45 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.45 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.45 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.44 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.43 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.43 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.43 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.42 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.4 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.38 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.37 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.37 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.35 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.35 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.34 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.33 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.3 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.3 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.3 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.29 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.26 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.25 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.22 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.21 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.2 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.2 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.19 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.18 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.17 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.17 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.15 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.08 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.06 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.06 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.01 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.01 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 98.99 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.96 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.93 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.93 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.91 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.91 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.91 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.87 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.87 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.85 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.82 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.8 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.8 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.74 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.72 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.7 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.69 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.67 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.67 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.66 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.65 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.65 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.64 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.63 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.61 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.6 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.56 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.55 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.52 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.52 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.5 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.48 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.47 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.47 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.47 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.45 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.44 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.44 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.42 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.42 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.41 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.41 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.4 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.4 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.39 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.39 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.33 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.33 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.32 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.31 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.29 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.29 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.28 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.28 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.27 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.26 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.25 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.24 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.24 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.24 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.24 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.23 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.22 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.21 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.19 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.19 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.18 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.16 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.13 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.13 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.11 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.11 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.09 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.09 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.08 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.08 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.07 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.04 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.04 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 97.96 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.96 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.96 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.96 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.95 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.95 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.94 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.94 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.92 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 97.9 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.9 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.9 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.9 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.88 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.88 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.84 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.83 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.83 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.82 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.82 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.8 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.77 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.74 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.73 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.67 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.64 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.63 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.59 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.59 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.58 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.57 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.56 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.52 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.4 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.36 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.25 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.21 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.21 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.17 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.11 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 96.98 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.87 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.87 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 96.86 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.8 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 96.78 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.77 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.76 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 96.67 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.56 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.55 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.45 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.43 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.39 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 96.34 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.29 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.18 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 95.71 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.57 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.41 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.37 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.32 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.29 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 94.39 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 94.12 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 93.56 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 92.7 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 91.66 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 91.65 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 90.56 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 89.94 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 89.85 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 89.67 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 88.59 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 87.63 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 87.1 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 87.03 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 86.69 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 86.62 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 86.55 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 86.36 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 85.85 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 85.73 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 85.08 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 83.9 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 83.84 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 82.8 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 82.23 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 81.67 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 80.57 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 80.26 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-34 Score=311.15 Aligned_cols=404 Identities=9% Similarity=-0.018 Sum_probs=344.2
Q ss_pred cccchhhHHHhhccCCCCCCCCCcccCccCCCCCCCCCCCChhhHHHHHHhccC---hHHHHHHHHHHHHcCCCCCHHHH
Q 037414 19 FFSSSTTAAIALEPHGHEQNPMNPRVPMQMGPDCQFTRSVDPKFFISSLLSCRN---IFQIRQVHAQIVAGGTLTNLIVA 95 (577)
Q Consensus 19 ~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~a~~~---~~~a~~~~~~~~~~g~~~~~~~~ 95 (577)
....|+.++..+.+.|++++|+++|+.|... .|+..++..+..++.. ++.|.+++..+... ++++.++
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~ 153 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYKCAAFVGEKVLDI-------TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACR 153 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHH
T ss_pred HHHHHHHHHHHHHHccCchHHHHHHHHHHhh-------CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHH
Confidence 4456889999999999999999999999743 5666777666666554 99999999987543 7889999
Q ss_pred HHHHHHHHcCCChHHHHHHHhcCCCC-------------------CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 037414 96 NKLLYIYALHKALTDAHALFNGMKER-------------------DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQL 156 (577)
Q Consensus 96 ~~li~~~~~~g~~~~A~~~f~~m~~~-------------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 156 (577)
+.++.+|.+.|++++|.++|+++... +..+|+.++.+|.+.|++++|+++|++|.+.+ |
T Consensus 154 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p 231 (597)
T 2xpi_A 154 YLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD--A 231 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T
T ss_pred HHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--c
Confidence 99999999999999999999965433 37899999999999999999999999999853 4
Q ss_pred Cc-chHHHH--------------------------------------HHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHH
Q 037414 157 DS-YTLPFV--------------------------------------IRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCA 197 (577)
Q Consensus 157 ~~-~t~~~l--------------------------------------l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 197 (577)
+. ..+..+ +..|.+.|++++|.++++++.+. +++..+++
T Consensus 232 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~ 309 (597)
T 2xpi_A 232 KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLL 309 (597)
T ss_dssp TCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHH
T ss_pred hhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHH
Confidence 32 222222 44456778888999999888765 57889999
Q ss_pred HHHHHHHhCCCHHHHHHHHhhCCC---CChhHHHHHHhc------------------CCCCcchhhHHHHHHHHHhcCCH
Q 037414 198 ALVDMYAKCKVIDDARQLFDQMPT---RDLVTWTVMIGA------------------NKFLLDVILGTAVIDMYAKCGSI 256 (577)
Q Consensus 198 ~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~~i~~------------------~g~~~~~~~~~~Li~~~~~~g~~ 256 (577)
.++.+|.+.|++++|.++|+++.+ .+..+|+.++.. ...+.+..+++.++.+|.+.|++
T Consensus 310 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 389 (597)
T 2xpi_A 310 CKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKI 389 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccH
Confidence 999999999999999999988853 345566655544 22355788999999999999999
Q ss_pred HHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhh
Q 037414 257 DSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMW 333 (577)
Q Consensus 257 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 333 (577)
++|.++|+++.+ .+..+|+.++.+|.+.|++++|+++|++|.+.+ +.+..++..++.+|.+.|++++|.++|+.+.
T Consensus 390 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 468 (597)
T 2xpi_A 390 SEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSY 468 (597)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999998863 567899999999999999999999999999864 4578899999999999999999999999998
Q ss_pred HhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 037414 334 DDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-------SVEKD--EGLWGALLGACRIHKNVDLAEMAAKSLLERQ 404 (577)
Q Consensus 334 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 404 (577)
+. .+.+..+|+.++..|.+.|++++|.++|+++ +..|+ ..+|..++.+|.+.|++++|...++++.+.+
T Consensus 469 ~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 546 (597)
T 2xpi_A 469 AL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS 546 (597)
T ss_dssp HH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred Hh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 64 2346889999999999999999999999988 44777 6799999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHhccCChhHHHHHHHHHhhCC
Q 037414 405 PQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 405 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
|+++.+|..++.+|.+.|++++|.+.++++.+..
T Consensus 547 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 547 TNDANVHTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999998754
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-31 Score=284.79 Aligned_cols=360 Identities=11% Similarity=-0.027 Sum_probs=313.2
Q ss_pred CChhhHHHHHHhccC---hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHhcC--CCCCcchHHHHHHH
Q 037414 58 VDPKFFISSLLSCRN---IFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGM--KERDSVSWSVMVGG 132 (577)
Q Consensus 58 p~~~~~~~ll~a~~~---~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m--~~~~~~~~~~li~~ 132 (577)
++...|..++..+.+ ++.|.+++..+.+. .|+..++..++.+|.+.|++++|..+|+++ ..++..+|+.++.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFC 159 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHH
Confidence 567778888887665 99999999999854 568889999999999999999999999998 45689999999999
Q ss_pred HHhCCChhHHHHHHHHHHHC---------------CCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHH
Q 037414 133 FSKVADFINCFETFREFIRC---------------GMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCA 197 (577)
Q Consensus 133 ~~~~g~~~~A~~~~~~m~~~---------------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 197 (577)
|.+.|++++|+++|+++... |.+++..+|+.++.+|.+.|++++|.+.|+++.+.+ +.+...+.
T Consensus 160 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~ 238 (597)
T 2xpi_A 160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFD 238 (597)
T ss_dssp HHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHH
Confidence 99999999999999853221 223457899999999999999999999999999875 22333333
Q ss_pred H--------------------------------------HHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcc
Q 037414 198 A--------------------------------------LVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLD 239 (577)
Q Consensus 198 ~--------------------------------------li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~ 239 (577)
. ++.+|.+.|++++|.++|+++.+. +++
T Consensus 239 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--------------~~~ 304 (597)
T 2xpi_A 239 QLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--------------EKS 304 (597)
T ss_dssp HHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--------------GGC
T ss_pred HHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--------------Cch
Confidence 3 356677889999999999999762 347
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 037414 240 VILGTAVIDMYAKCGSIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYAC 316 (577)
Q Consensus 240 ~~~~~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 316 (577)
..+++.++.+|.+.|++++|..+|+++.+ .+..+|+.++.+|.+.|++++|.++|+++.+. .+.+..++..+...|
T Consensus 305 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~ 383 (597)
T 2xpi_A 305 SDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDR-HPEKAVTWLAVGIYY 383 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHH
Confidence 78889999999999999999999999863 47789999999999999999999999999865 355788999999999
Q ss_pred hccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHH
Q 037414 317 SHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAE 394 (577)
Q Consensus 317 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~ 394 (577)
.+.|++++|.++|+.+.+. .+.+..+|+.++.+|.+.|++++|.++|+++ ...| +..+|..++.+|.+.|++++|.
T Consensus 384 ~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 461 (597)
T 2xpi_A 384 LCVNKISEARRYFSKSSTM--DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLAN 461 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHH
T ss_pred HHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999753 2345789999999999999999999999998 3334 7789999999999999999999
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhC
Q 037414 395 MAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRR 437 (577)
Q Consensus 395 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 437 (577)
++|+++.+..|.++.+|..++.+|.+.|++++|.++++++.+.
T Consensus 462 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 504 (597)
T 2xpi_A 462 EYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLL 504 (597)
T ss_dssp HHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999875
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=6e-29 Score=258.01 Aligned_cols=202 Identities=14% Similarity=0.209 Sum_probs=164.0
Q ss_pred HHHHHHHHHHHCCCCCCc-chHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCC---------HH
Q 037414 141 NCFETFREFIRCGMQLDS-YTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKV---------ID 210 (577)
Q Consensus 141 ~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---------~~ 210 (577)
.+..+.+++.+.++.+.+ ..++.+|++|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+. ++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 344555666666555443 34666777777777777777777777777777777777777777766554 78
Q ss_pred HHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC----CChhhHHHHHHHHHHcCC
Q 037414 211 DARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ----KNVISWSAMIAAYGYHGQ 286 (577)
Q Consensus 211 ~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~ 286 (577)
+|.++|++|.+ .|+.||..+||+||.+|++.|++++|.++|++|.+ ||..+||++|.+|++.|+
T Consensus 88 ~A~~lf~~M~~------------~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~ 155 (501)
T 4g26_A 88 RGFDIFKQMIV------------DKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGD 155 (501)
T ss_dssp HHHHHHHHHHH------------TTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHH------------hCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCC
Confidence 99999999976 57899999999999999999999999999999974 899999999999999999
Q ss_pred hHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHc
Q 037414 287 GKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRA 355 (577)
Q Consensus 287 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 355 (577)
.++|.++|++|.+.|+.||..||++||.+|++.|++++|.+++++|.+ .+..|+..||+.++..|...
T Consensus 156 ~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~-~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 156 ADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRD-LVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHH-hCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999965 59999999999999998753
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=9.7e-29 Score=256.43 Aligned_cols=199 Identities=13% Similarity=0.074 Sum_probs=173.9
Q ss_pred HHHHHHhcCCCC-----CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCC---------hH
Q 037414 110 DAHALFNGMKER-----DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKD---------IV 175 (577)
Q Consensus 110 ~A~~~f~~m~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~---------~~ 175 (577)
.+..++.++.++ ....++.+|.+|++.|++++|+++|++|.+.|++||..||++||.+|++.+. ++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 344444555433 2235888999999999999999999999999999999999999999987654 68
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCC
Q 037414 176 MGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGS 255 (577)
Q Consensus 176 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~ 255 (577)
.|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+ .|+.||..+||+||.+|++.|+
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~------------~g~~Pd~~tyn~lI~~~~~~g~ 155 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKA------------FGIQPRLRSYGPALFGFCRKGD 155 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH------------TTCCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH------------cCCCCccceehHHHHHHHHCCC
Confidence 8999999999999999999999999999999999999999999986 5788999999999999999999
Q ss_pred HHHHHHHHHhccC----CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccC
Q 037414 256 IDSAREIFDRMRQ----KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTG 320 (577)
Q Consensus 256 ~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 320 (577)
+++|.++|++|.+ ||..+|++||.+|++.|+.++|.++|++|.+.|..|+..||+.++..|+..+
T Consensus 156 ~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~ 224 (501)
T 4g26_A 156 ADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEV 224 (501)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHH
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCc
Confidence 9999999999974 8999999999999999999999999999999999999999999999987643
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-25 Score=226.94 Aligned_cols=343 Identities=13% Similarity=0.051 Sum_probs=150.2
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHH
Q 037414 73 IFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKE---RDSVSWSVMVGGFSKVADFINCFETFREF 149 (577)
Q Consensus 73 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m 149 (577)
++.|.+.+..+.+.. +.+...+..+...+...|++++|...++...+ .+..+|+.+...|.+.|++++|++.|+++
T Consensus 15 ~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 93 (388)
T 1w3b_A 15 FEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHA 93 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 444444444444432 23333444444444444444444444443321 13334444444444444444444444444
Q ss_pred HHCCCCCC-cchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHH
Q 037414 150 IRCGMQLD-SYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWT 228 (577)
Q Consensus 150 ~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 228 (577)
.+. .|+ ..+|..+..++...|++++|.+.+.++++.. +.+..++..+...|...|++++|.+.|+++.+.+
T Consensus 94 l~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----- 165 (388)
T 1w3b_A 94 LRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ----- 165 (388)
T ss_dssp HHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-----
T ss_pred HHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----
Confidence 442 222 2234444444444444444444444444432 2233344444444444444444444444443211
Q ss_pred HHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCC
Q 037414 229 VMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPN 305 (577)
Q Consensus 229 ~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 305 (577)
+.+..+++.+...|.+.|++++|...|+++.+ .+...|..+...+...|++++|...|++..... +.+
T Consensus 166 --------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~ 236 (388)
T 1w3b_A 166 --------PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNH 236 (388)
T ss_dssp --------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTC
T ss_pred --------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCC
Confidence 11233444444444444444444444444432 123334444444444444444444444444321 112
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHhHHHHHHH
Q 037414 306 RITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP-DVKHYTCMVDLLGRAGRLDEALKLIESM-SV-EKDEGLWGALLG 382 (577)
Q Consensus 306 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~ 382 (577)
..++..+..++...|++++|.+.|+.+++. .| +...|..+...|.+.|++++|.+.|+++ .. .++..+|..+..
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 313 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLAN 313 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHH
Confidence 334444444444444444444444444321 12 2334444444444444444444444444 11 123334444444
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhh
Q 037414 383 ACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTR 436 (577)
Q Consensus 383 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 436 (577)
.+...|++++|...++++++..|+++.++..++.+|.+.|++++|.+.++++.+
T Consensus 314 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 314 IKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 444444444444444444444444444444444444444444444444444443
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=3.3e-24 Score=217.36 Aligned_cols=371 Identities=12% Similarity=0.058 Sum_probs=316.5
Q ss_pred HHHhhccCCCCCCCCCcccCccCCCCCCCCCCCChhh----HHHHHHhccChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 037414 26 AAIALEPHGHEQNPMNPRVPMQMGPDCQFTRSVDPKF----FISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYI 101 (577)
Q Consensus 26 ~~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~----~~~ll~a~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 101 (577)
+...+.+.|++++|++.+..+... .|+... ...+...+++.+.|...+...++.. +.+...+..+...
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~-------~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~ 76 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQ-------EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNV 76 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHH
Confidence 456678899999999999887754 343332 3333444556999999999888875 7788999999999
Q ss_pred HHcCCChHHHHHHHhcCCC--C-CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcc-hHHHHHHHHhcCCChHHH
Q 037414 102 YALHKALTDAHALFNGMKE--R-DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSY-TLPFVIRACRDRKDIVMG 177 (577)
Q Consensus 102 ~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a 177 (577)
|.+.|++++|...|+++.+ | +..+|..+...+.+.|++++|++.|+++.+. .|+.. .+..+...+...|++++|
T Consensus 77 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A 154 (388)
T 1w3b_A 77 YKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEA 154 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHH
Confidence 9999999999999998753 4 5567999999999999999999999999985 46544 566677778899999999
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHH
Q 037414 178 RLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSID 257 (577)
Q Consensus 178 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~ 257 (577)
.+.+.++++.. +.+..++..+...|.+.|++++|...|+++.+.++ .+...+..+...+...|+++
T Consensus 155 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-------------~~~~~~~~lg~~~~~~~~~~ 220 (388)
T 1w3b_A 155 KACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-------------NFLDAYINLGNVLKEARIFD 220 (388)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-------------TCHHHHHHHHHHHHTTTCTT
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-------------CcHHHHHHHHHHHHHcCCHH
Confidence 99999999875 55688999999999999999999999999865332 24668899999999999999
Q ss_pred HHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhH
Q 037414 258 SAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWD 334 (577)
Q Consensus 258 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 334 (577)
+|...|++..+ .+..+|..+...|.+.|++++|++.|+++.+.. +.+..++..+..++.+.|++++|.+.++.+++
T Consensus 221 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 299 (388)
T 1w3b_A 221 RAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALR 299 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999998763 457889999999999999999999999999863 33567889999999999999999999999986
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHH
Q 037414 335 DFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYV 412 (577)
Q Consensus 335 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 412 (577)
. .+.+..++..+...|.+.|++++|.+.++++ ...| +..+|..+...+...|++++|...++++++..|+++..|.
T Consensus 300 ~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~ 377 (388)
T 1w3b_A 300 L--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYS 377 (388)
T ss_dssp H--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHH
T ss_pred h--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Confidence 4 3557889999999999999999999999998 4455 4668999999999999999999999999999999999999
Q ss_pred HHHHHHhccCC
Q 037414 413 LLSNVYANAGR 423 (577)
Q Consensus 413 ~l~~~~~~~g~ 423 (577)
.+...+...|+
T Consensus 378 ~lg~~~~~~~~ 388 (388)
T 1w3b_A 378 NMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHTCC
T ss_pred hHHHHHHHccC
Confidence 99998877663
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.91 E-value=4.6e-22 Score=205.56 Aligned_cols=325 Identities=13% Similarity=0.062 Sum_probs=272.8
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHH
Q 037414 89 LTNLIVANKLLYIYALHKALTDAHALFNGMKE---RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVI 165 (577)
Q Consensus 89 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 165 (577)
+.++..+..+...|.+.|++++|..+|+++.+ .+..+|..+...|.+.|++++|++.|+++.+.+ +.+..++..+.
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 56788899999999999999999999998753 367889999999999999999999999999864 23567888899
Q ss_pred HHHhcCCChHHHHHHHHHHHHcCCCCcH---HHHHHHH------------HHHHhCCCHHHHHHHHhhCCCCChhHHHHH
Q 037414 166 RACRDRKDIVMGRLIHDIVLKSGLDIDQ---FVCAALV------------DMYAKCKVIDDARQLFDQMPTRDLVTWTVM 230 (577)
Q Consensus 166 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~---~~~~~li------------~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 230 (577)
..+...|++++|...++++.+.. +.+. .++..++ ..|.+.|++++|...|+++.+.+
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------- 173 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC------- 173 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------
Confidence 99999999999999999998864 3344 5665554 44999999999999999876422
Q ss_pred HhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCC-H
Q 037414 231 IGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPN-R 306 (577)
Q Consensus 231 i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~ 306 (577)
+.+..++..++.+|.+.|++++|..+|+++.+ .+..+|..++..|...|++++|+..|+++... .|+ .
T Consensus 174 ------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~ 245 (450)
T 2y4t_A 174 ------VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHK 245 (450)
T ss_dssp ------TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred ------CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChH
Confidence 23567888999999999999999999999864 56889999999999999999999999999864 444 3
Q ss_pred HHHHHH------------HHHHhccCCHHHHHHHHHHhhHhcCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHhC-
Q 037414 307 ITFVSL------------LYACSHTGLVEEGLRLFSSMWDDFAVRPD-----VKHYTCMVDLLGRAGRLDEALKLIESM- 368 (577)
Q Consensus 307 ~t~~~l------------l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m- 368 (577)
..+..+ ...|.+.|++++|..+|+.+++. .|+ ..+|..+...|.+.|++++|.+.++++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 322 (450)
T 2y4t_A 246 RCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVL 322 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334333 78899999999999999999864 454 457889999999999999999999987
Q ss_pred CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHH------------HHHhccC-----ChhHHHHH
Q 037414 369 SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLS------------NVYANAG-----RWQDVAKI 430 (577)
Q Consensus 369 ~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~------------~~~~~~g-----~~~~A~~~ 430 (577)
...| +..+|..+..+|...|++++|...++++++..|.++..+..+. ..|...| +.+++.+.
T Consensus 323 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~ 402 (450)
T 2y4t_A 323 QMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKA 402 (450)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHH
T ss_pred HhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHH
Confidence 4445 6789999999999999999999999999999999999998888 4455556 45556666
Q ss_pred HHH
Q 037414 431 RDL 433 (577)
Q Consensus 431 ~~~ 433 (577)
+++
T Consensus 403 y~~ 405 (450)
T 2y4t_A 403 YRK 405 (450)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.7e-20 Score=193.69 Aligned_cols=307 Identities=11% Similarity=0.006 Sum_probs=257.1
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 037414 122 DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVD 201 (577)
Q Consensus 122 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 201 (577)
+...|..+...+.+.|++++|+.+|+++.+. .+.+..++..+..++...|++++|...++++++.+ +.+..++..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDG-DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 5667999999999999999999999999985 23467888999999999999999999999999986 557889999999
Q ss_pred HHHhCCCHHHHHHHHhhCCCCCh------hHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC---CChh
Q 037414 202 MYAKCKVIDDARQLFDQMPTRDL------VTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ---KNVI 272 (577)
Q Consensus 202 ~~~~~g~~~~A~~~~~~m~~~~~------~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~ 272 (577)
+|.+.|++++|.+.|+++.+.++ ..|..+... -....+..+...|.+.|++++|...|+++.+ .+..
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 178 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKS----DEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAE 178 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence 99999999999999999876433 222222100 0011123345669999999999999999864 4678
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC-HHHHHHH---
Q 037414 273 SWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD-VKHYTCM--- 348 (577)
Q Consensus 273 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l--- 348 (577)
.+..++..|.+.|++++|.+.|+++.+.. +.+..++..+...|...|++++|...|+.+.+. .|+ ...+..+
T Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~~~~ 254 (450)
T 2y4t_A 179 LRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQV 254 (450)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCChHHHHHHHHHH
Confidence 89999999999999999999999998753 446788999999999999999999999999753 444 4444444
Q ss_pred ---------HHHHHHcCCHHHHHHHHHhC-CCCCC-----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHH
Q 037414 349 ---------VDLLGRAGRLDEALKLIESM-SVEKD-----EGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVL 413 (577)
Q Consensus 349 ---------i~~~~~~g~~~~A~~~~~~m-~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 413 (577)
...|.+.|++++|.+.|+++ ...|+ ...|..+...+...|++++|...++++++..|+++.+|..
T Consensus 255 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~ 334 (450)
T 2y4t_A 255 KKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKD 334 (450)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 78899999999999999998 34454 3478888899999999999999999999999999999999
Q ss_pred HHHHHhccCChhHHHHHHHHHhhCC
Q 037414 414 LSNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 414 l~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
++.+|...|++++|.+.+++..+..
T Consensus 335 l~~~~~~~~~~~~A~~~~~~al~~~ 359 (450)
T 2y4t_A 335 RAEAYLIEEMYDEAIQDYETAQEHN 359 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 9999999999999999999998643
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.7e-20 Score=195.50 Aligned_cols=349 Identities=8% Similarity=-0.089 Sum_probs=269.3
Q ss_pred cChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHhcCCC--C-CcchHHHHHHHHHhCCChhHHHHHHH
Q 037414 71 RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKE--R-DSVSWSVMVGGFSKVADFINCFETFR 147 (577)
Q Consensus 71 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~ 147 (577)
++++.|...+..+++.. |+..++..+...|.+.|++++|...|+++.+ | +..+|..+..+|.+.|++++|+..|+
T Consensus 20 g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 97 (514)
T 2gw1_A 20 KKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLS 97 (514)
T ss_dssp SCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 33666666666666654 4666666666666666666666666665532 2 44556666666666666666666666
Q ss_pred HHHHCCCC------------------------------------------------------------------------
Q 037414 148 EFIRCGMQ------------------------------------------------------------------------ 155 (577)
Q Consensus 148 ~m~~~g~~------------------------------------------------------------------------ 155 (577)
++...+..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (514)
T 2gw1_A 98 VLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTF 177 (514)
T ss_dssp HHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCC
T ss_pred HHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHH
Confidence 66554310
Q ss_pred -----CC-cchHHHHHHHHh---cCCChHHHHHHHHHHHH-----cCC--------CCcHHHHHHHHHHHHhCCCHHHHH
Q 037414 156 -----LD-SYTLPFVIRACR---DRKDIVMGRLIHDIVLK-----SGL--------DIDQFVCAALVDMYAKCKVIDDAR 213 (577)
Q Consensus 156 -----p~-~~t~~~ll~~~~---~~~~~~~a~~~~~~~~~-----~g~--------~~~~~~~~~li~~~~~~g~~~~A~ 213 (577)
|+ ...+......+. +.|++++|...++++++ ..- +.+..++..+...|...|++++|.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 257 (514)
T 2gw1_A 178 ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAH 257 (514)
T ss_dssp SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHH
Confidence 00 112222222222 38999999999999988 311 234678888999999999999999
Q ss_pred HHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHH
Q 037414 214 QLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKA 290 (577)
Q Consensus 214 ~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 290 (577)
..|+++.+.+ |+..++..+...|...|++++|...|+++.+ .+...|..+...|...|++++|
T Consensus 258 ~~~~~~l~~~--------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 323 (514)
T 2gw1_A 258 EDIKKAIELF--------------PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQA 323 (514)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHH
T ss_pred HHHHHHHhhC--------------ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHH
Confidence 9999875422 2256788899999999999999999998865 4667899999999999999999
Q ss_pred HHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC--
Q 037414 291 LDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-- 368 (577)
Q Consensus 291 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-- 368 (577)
...|++..+.. +.+...+..+...+...|++++|...++.+.+. .+.+...+..+...|.+.|++++|.+.++++
T Consensus 324 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 400 (514)
T 2gw1_A 324 GKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIE 400 (514)
T ss_dssp HHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999998864 335668888999999999999999999999764 2335678889999999999999999999887
Q ss_pred --CCCCC----HhHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCC
Q 037414 369 --SVEKD----EGLWGALLGACRI---HKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 369 --~~~p~----~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
+..++ ...|..+...+.. .|++++|...++++++..|.++.++..++.+|...|++++|.+.+++..+..
T Consensus 401 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 401 LENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 22222 3388899999999 9999999999999999999999999999999999999999999999988654
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.2e-20 Score=194.99 Aligned_cols=370 Identities=9% Similarity=-0.061 Sum_probs=300.7
Q ss_pred cchhhHHHhhccCCCCCCCCCcccCccCCCCCCCCCCCChhhHHHHHHhcc---ChHHHHHHHHHHHHcCCCCCHHHHHH
Q 037414 21 SSSTTAAIALEPHGHEQNPMNPRVPMQMGPDCQFTRSVDPKFFISSLLSCR---NIFQIRQVHAQIVAGGTLTNLIVANK 97 (577)
Q Consensus 21 ~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~a~~---~~~~a~~~~~~~~~~g~~~~~~~~~~ 97 (577)
..+......+.+.|++++|+..|+.+... .|+..++..+-.++. +++.|.+.+..+++.. +.+..++..
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 78 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALEL-------KEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLR 78 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHH-------CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhc-------CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHH
Confidence 34556667789999999999999999865 367777766555544 3999999999999886 667889999
Q ss_pred HHHHHHcCCChHHHHHHHhcCCCCC-------------------------------------------------------
Q 037414 98 LLYIYALHKALTDAHALFNGMKERD------------------------------------------------------- 122 (577)
Q Consensus 98 li~~~~~~g~~~~A~~~f~~m~~~~------------------------------------------------------- 122 (577)
+..+|.+.|++++|...|+++...+
T Consensus 79 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (514)
T 2gw1_A 79 RASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENL 158 (514)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CC
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCC
Confidence 9999999999999999998763211
Q ss_pred ---------------------------cchHHHHHHHHHh---CCChhHHHHHHHHHHH-----CCCCC--------Ccc
Q 037414 123 ---------------------------SVSWSVMVGGFSK---VADFINCFETFREFIR-----CGMQL--------DSY 159 (577)
Q Consensus 123 ---------------------------~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~~p--------~~~ 159 (577)
...|......+.. .|++++|+..|+++.+ ..-.| +..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (514)
T 2gw1_A 159 PSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAI 238 (514)
T ss_dssp CCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHH
T ss_pred chhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHH
Confidence 2222333333333 8999999999999988 32222 245
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcc
Q 037414 160 TLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLD 239 (577)
Q Consensus 160 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~ 239 (577)
++..+...+...|++++|...++.+++.... ..++..+..+|...|++++|...|+++.+.+ +.+
T Consensus 239 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------------~~~ 303 (514)
T 2gw1_A 239 SLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-------------SNN 303 (514)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-------------TTC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-------------cCC
Confidence 6777888899999999999999999988633 8889999999999999999999999876543 225
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 037414 240 VILGTAVIDMYAKCGSIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYAC 316 (577)
Q Consensus 240 ~~~~~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 316 (577)
..++..+...|...|++++|...|++..+ .+...|..+...|...|++++|...|+++.+.. +.+..++..+...+
T Consensus 304 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 382 (514)
T 2gw1_A 304 SSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEIL 382 (514)
T ss_dssp THHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHH
Confidence 66888999999999999999999998753 456789999999999999999999999998753 33567788889999
Q ss_pred hccCCHHHHHHHHHHhhHhcCCCCC----HHHHHHHHHHHHH---cCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhc
Q 037414 317 SHTGLVEEGLRLFSSMWDDFAVRPD----VKHYTCMVDLLGR---AGRLDEALKLIESM-SVEK-DEGLWGALLGACRIH 387 (577)
Q Consensus 317 ~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~---~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~ 387 (577)
...|++++|...++.+.+...-.++ ...+..+...|.+ .|++++|.+.++++ ...| +..+|..+...+...
T Consensus 383 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 462 (514)
T 2gw1_A 383 TDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQ 462 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh
Confidence 9999999999999998764332333 4488899999999 99999999999987 3334 567889999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhHHHH
Q 037414 388 KNVDLAEMAAKSLLERQPQNPGHYVLL 414 (577)
Q Consensus 388 g~~~~a~~~~~~~~~~~p~~~~~~~~l 414 (577)
|++++|...++++++..|.++..+..+
T Consensus 463 g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 463 EDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp TCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 999999999999999999988776655
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=6.5e-18 Score=168.23 Aligned_cols=309 Identities=10% Similarity=-0.029 Sum_probs=237.6
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 037414 123 SVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDM 202 (577)
Q Consensus 123 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 202 (577)
+..|..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++.+++.. +.+..++..+..+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 4456677778888888888888888887752 2245677777777888888888888888888764 4466788888888
Q ss_pred HHhCCCHHHHHHHHhhCCCCCh---hHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHH
Q 037414 203 YAKCKVIDDARQLFDQMPTRDL---VTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ---KNVISWSA 276 (577)
Q Consensus 203 ~~~~g~~~~A~~~~~~m~~~~~---~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ 276 (577)
|.+.|++++|...|++..+.++ ........- +.......+..+...+...|++++|...|+++.+ .+...|..
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 159 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQL-VKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELREL 159 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHH-HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHH
Confidence 8888888888888888765433 111000000 0000011122336889999999999999999864 46778999
Q ss_pred HHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC-HHHHH---------
Q 037414 277 MIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD-VKHYT--------- 346 (577)
Q Consensus 277 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~--------- 346 (577)
+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++...+. .|+ ...+.
T Consensus 160 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~ 235 (359)
T 3ieg_A 160 RAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVKKLN 235 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CccchHHHHHHHHHHHHH
Confidence 9999999999999999999998863 456788889999999999999999999999754 333 33332
Q ss_pred ---HHHHHHHHcCCHHHHHHHHHhC-CCCCCHh-----HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 037414 347 ---CMVDLLGRAGRLDEALKLIESM-SVEKDEG-----LWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNV 417 (577)
Q Consensus 347 ---~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 417 (577)
.+...+.+.|++++|.+.+++. ...|+.. .+..+...+...|++++|...++++.+..|+++.++..++.+
T Consensus 236 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 315 (359)
T 3ieg_A 236 KLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEA 315 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 2366789999999999999987 3344422 355577889999999999999999999999999999999999
Q ss_pred HhccCChhHHHHHHHHHhhCC
Q 037414 418 YANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 418 ~~~~g~~~~A~~~~~~m~~~g 438 (577)
|...|++++|.+.+++..+..
T Consensus 316 ~~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 316 YLIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHcCCHHHHHHHHHHHHhcC
Confidence 999999999999999988643
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.9e-19 Score=190.25 Aligned_cols=394 Identities=9% Similarity=-0.022 Sum_probs=294.9
Q ss_pred cccchhhHHHhhccCCCCCCCCCcccCccCCCCCCCCCCCChhhHHHHH---HhccChHHHHHHHHHHHHcCCCCCHHHH
Q 037414 19 FFSSSTTAAIALEPHGHEQNPMNPRVPMQMGPDCQFTRSVDPKFFISSL---LSCRNIFQIRQVHAQIVAGGTLTNLIVA 95 (577)
Q Consensus 19 ~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll---~a~~~~~~a~~~~~~~~~~g~~~~~~~~ 95 (577)
....+......+.+.|++++|++.|+.+... . +.+..++..+- ...++.+.|.+.+..+++.. +.+...+
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~ 96 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIEL---D---PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKAL 96 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHH---C---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhh---C---CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHH
Confidence 4455667778899999999999999998765 1 12334443333 33345999999999999886 6678899
Q ss_pred HHHHHHHHcCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHC------CCCCCcch---------
Q 037414 96 NKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRC------GMQLDSYT--------- 160 (577)
Q Consensus 96 ~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~t--------- 160 (577)
..+...|...|++++|...|+.+. .+....+..+..+...+...+|+..++.+... ...|+...
T Consensus 97 ~~la~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (537)
T 3fp2_A 97 LRRASANESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFD 175 (537)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcC
Confidence 999999999999999999997443 23333334455556666677888888887543 11222221
Q ss_pred ---------------------HHHHHHHHhcC--------CChHHHHHHHHHHHHcCCCCc-------HHHHHHHHHHHH
Q 037414 161 ---------------------LPFVIRACRDR--------KDIVMGRLIHDIVLKSGLDID-------QFVCAALVDMYA 204 (577)
Q Consensus 161 ---------------------~~~ll~~~~~~--------~~~~~a~~~~~~~~~~g~~~~-------~~~~~~li~~~~ 204 (577)
...+...+... +++++|..+++.+++.. +.+ ..++..+...+.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~ 254 (537)
T 3fp2_A 176 SHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHF 254 (537)
T ss_dssp HHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHH
Confidence 11222222211 37888999999888764 223 235677778899
Q ss_pred hCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHH
Q 037414 205 KCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ---KNVISWSAMIAAY 281 (577)
Q Consensus 205 ~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 281 (577)
..|++++|...|++..+. .|+..++..+...|...|++++|...|+++.+ .+...|..+...|
T Consensus 255 ~~~~~~~A~~~~~~~~~~--------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 320 (537)
T 3fp2_A 255 LKNNLLDAQVLLQESINL--------------HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMY 320 (537)
T ss_dssp HTTCHHHHHHHHHHHHHH--------------CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHhc--------------CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 999999999999987642 23456788899999999999999999998864 4577899999999
Q ss_pred HHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 037414 282 GYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEA 361 (577)
Q Consensus 282 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 361 (577)
...|++++|...|++..+.. +.+...+..+...+...|++++|...++.+.+. .+.+...+..+...|.+.|++++|
T Consensus 321 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A 397 (537)
T 3fp2_A 321 FILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTA 397 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHH
T ss_pred HhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHH
Confidence 99999999999999998863 334567888999999999999999999999864 234567888999999999999999
Q ss_pred HHHHHhC----CCCC----CHhHHHHHHHHHHhc----------CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCC
Q 037414 362 LKLIESM----SVEK----DEGLWGALLGACRIH----------KNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGR 423 (577)
Q Consensus 362 ~~~~~~m----~~~p----~~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 423 (577)
.+.|+++ +..+ ....+..+...+... |++++|...++++++..|+++.++..++.+|...|+
T Consensus 398 ~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~ 477 (537)
T 3fp2_A 398 IKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEK 477 (537)
T ss_dssp HHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc
Confidence 9999887 1111 222344455667777 999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhhCC
Q 037414 424 WQDVAKIRDLMTRRR 438 (577)
Q Consensus 424 ~~~A~~~~~~m~~~g 438 (577)
+++|.+.+++..+..
T Consensus 478 ~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 478 IDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999988654
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.2e-18 Score=170.46 Aligned_cols=311 Identities=12% Similarity=0.028 Sum_probs=254.6
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHH
Q 037414 91 NLIVANKLLYIYALHKALTDAHALFNGMKE---RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRA 167 (577)
Q Consensus 91 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 167 (577)
|+..+..+...+.+.|++++|...|+++.+ .+...|..+...+...|++++|+..|+++.+.. +.+...+..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 456777888899999999999999998753 357788999999999999999999999998853 2256778888888
Q ss_pred HhcCCChHHHHHHHHHHHHcCCC---CcHHHHHHH------------HHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHh
Q 037414 168 CRDRKDIVMGRLIHDIVLKSGLD---IDQFVCAAL------------VDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG 232 (577)
Q Consensus 168 ~~~~~~~~~a~~~~~~~~~~g~~---~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~ 232 (577)
+...|++++|...++.+.+.. + .+...+..+ ...+...|++++|.+.|+++.+.+
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------- 150 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC--------- 150 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------
T ss_pred HHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---------
Confidence 999999999999999998764 3 345555555 588999999999999999876422
Q ss_pred cCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHH
Q 037414 233 ANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITF 309 (577)
Q Consensus 233 ~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 309 (577)
+.+..++..+...|.+.|++++|...|++..+ .+...|..+...|...|++++|...|++..+.. +.+...+
T Consensus 151 ----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~ 225 (359)
T 3ieg_A 151 ----VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCF 225 (359)
T ss_dssp ----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred ----CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHH
Confidence 23567888899999999999999999999865 467789999999999999999999999998753 2223332
Q ss_pred H------------HHHHHHhccCCHHHHHHHHHHhhHhcCCCCC-H----HHHHHHHHHHHHcCCHHHHHHHHHhC-CCC
Q 037414 310 V------------SLLYACSHTGLVEEGLRLFSSMWDDFAVRPD-V----KHYTCMVDLLGRAGRLDEALKLIESM-SVE 371 (577)
Q Consensus 310 ~------------~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~----~~~~~li~~~~~~g~~~~A~~~~~~m-~~~ 371 (577)
. .+...+...|++++|...++.+.+. .|+ . ..+..+...|.+.|++++|.+.+++. ...
T Consensus 226 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 302 (359)
T 3ieg_A 226 AHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME 302 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 2 2356688999999999999999864 233 2 33556778999999999999999988 334
Q ss_pred C-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhc
Q 037414 372 K-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYAN 420 (577)
Q Consensus 372 p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 420 (577)
| +..+|..+...+...|++++|...++++++.+|+++..+..+..++..
T Consensus 303 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 303 PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 5 677999999999999999999999999999999999888887776654
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.4e-17 Score=162.17 Aligned_cols=289 Identities=12% Similarity=0.037 Sum_probs=235.7
Q ss_pred CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 037414 121 RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALV 200 (577)
Q Consensus 121 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 200 (577)
.+...+..+...+...|++++|+++|+++.+.. +.+...+..+...+...|++++|...+.++++.. +.+..++..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 366677788888888899999999999988753 2345566677778888899999999999888875 55678888899
Q ss_pred HHHHhCC-CHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHH
Q 037414 201 DMYAKCK-VIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ---KNVISWSA 276 (577)
Q Consensus 201 ~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ 276 (577)
..|...| ++++|.+.|++..+.++ .+...+..+...|...|++++|...|++..+ .+...+..
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~-------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 164 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEK-------------TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLY 164 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCT-------------TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCC-------------ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHH
Confidence 9999999 89999999988765432 2466788889999999999999999998764 34677888
Q ss_pred HHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcC-------CCCCHHHHHHHH
Q 037414 277 MIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFA-------VRPDVKHYTCMV 349 (577)
Q Consensus 277 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-------~~p~~~~~~~li 349 (577)
+...|...|++++|...|++..+.. +.+...+..+...+...|++++|...++.+.+... .+.....+..+.
T Consensus 165 l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la 243 (330)
T 3hym_B 165 IGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLG 243 (330)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHH
Confidence 8999999999999999999998763 44567888889999999999999999998876421 133467888999
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH-hccCChh
Q 037414 350 DLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVY-ANAGRWQ 425 (577)
Q Consensus 350 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~ 425 (577)
..|.+.|++++|.+.+++. ...| +...|..+...+...|++++|...++++++..|+++..+..+..++ ...|+.+
T Consensus 244 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 244 HVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 9999999999999999887 3334 5668899999999999999999999999999999999999999988 4555543
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.9e-17 Score=160.72 Aligned_cols=267 Identities=13% Similarity=0.063 Sum_probs=227.5
Q ss_pred CCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhc
Q 037414 154 MQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA 233 (577)
Q Consensus 154 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~ 233 (577)
.+.+...+..+...+...|++++|..+++++.+.. +.+...+..++..+...|++++|...|+++.+.+
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---------- 86 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY---------- 86 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC----------
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC----------
Confidence 45567778888888889999999999999999875 5566677788899999999999999999876532
Q ss_pred CCCCcchhhHHHHHHHHHhcC-CHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHH
Q 037414 234 NKFLLDVILGTAVIDMYAKCG-SIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITF 309 (577)
Q Consensus 234 ~g~~~~~~~~~~Li~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 309 (577)
+.+..++..+...|...| ++++|...|++..+ .+...|..+...+...|++++|+..|+++.+.. +.+...+
T Consensus 87 ---~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~ 162 (330)
T 3hym_B 87 ---PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPM 162 (330)
T ss_dssp ---TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHH
T ss_pred ---cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHH
Confidence 225677888999999999 99999999999865 456789999999999999999999999998864 2345667
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CC----------CCCHhHHH
Q 037414 310 VSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SV----------EKDEGLWG 378 (577)
Q Consensus 310 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~----------~p~~~~~~ 378 (577)
..+...+...|++++|.+.++.+++. .+.+...+..+...|.+.|++++|.+.+++. .. ..+..+|.
T Consensus 163 ~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 240 (330)
T 3hym_B 163 LYIGLEYGLTNNSKLAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLN 240 (330)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHH
Confidence 77889999999999999999999743 2345788899999999999999999999877 11 22456899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhC
Q 037414 379 ALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRR 437 (577)
Q Consensus 379 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 437 (577)
.+...+...|++++|...++++++..|.++..+..+..+|...|++++|.+.+++..+.
T Consensus 241 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 241 NLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999999999999999999999877643
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.78 E-value=7.4e-19 Score=174.19 Aligned_cols=282 Identities=12% Similarity=0.101 Sum_probs=133.8
Q ss_pred cCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCChHHHHHHHHH
Q 037414 104 LHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDI 183 (577)
Q Consensus 104 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 183 (577)
+.|++++|.++++++..| .+|..|+.++.+.|++++|++.|.+ .+|..+|..++.++...|++++|...++.
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 678899999999999665 4899999999999999999999965 25777999999999999999999998887
Q ss_pred HHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHH
Q 037414 184 VLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIF 263 (577)
Q Consensus 184 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~ 263 (577)
..+. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+.+.|...|++++|...|
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~-------------------pn~~a~~~IGd~~~~~g~yeeA~~~Y 145 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING-------------------PNNAHIQQVGDRCYDEKMYDAAKLLY 145 (449)
T ss_dssp ------------------------CHHHHTTTTTC-------------------C----------------CTTTHHHHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC-------------------CcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 7764 45678899999999999999999888753 24447788899999999999999999
Q ss_pred HhccCCChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHH
Q 037414 264 DRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVK 343 (577)
Q Consensus 264 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~ 343 (577)
..+ ..|..++.++.+.|++++|.+.++++ .+..+|..++.+|...|+++.|......+ ...+.
T Consensus 146 ~~a-----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L------~~~ad 208 (449)
T 1b89_A 146 NNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI------VVHAD 208 (449)
T ss_dssp HHT-----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT------TTCHH
T ss_pred HHh-----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH------HhCHh
Confidence 988 47999999999999999999999988 27889999999999999999996544432 23444
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCC-----CCchhHHHH
Q 037414 344 HYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHK--NVDLAEMAAKSLLERQP-----QNPGHYVLL 414 (577)
Q Consensus 344 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~p-----~~~~~~~~l 414 (577)
....++..|.+.|++++|..+++.. +.++ ....|+-|.-++.+.+ +..+.++.|..-+...| .+...|..+
T Consensus 209 ~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~ 288 (449)
T 1b89_A 209 ELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAEL 288 (449)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHH
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 5667889999999999999999876 5554 4557877777777653 44444554443333334 467889999
Q ss_pred HHHHhccCChhHHHHHH
Q 037414 415 SNVYANAGRWQDVAKIR 431 (577)
Q Consensus 415 ~~~~~~~g~~~~A~~~~ 431 (577)
+..|.+-++|+.|..+.
T Consensus 289 ~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 289 VFLYDKYEEYDNAIITM 305 (449)
T ss_dssp HHHHHHTTCHHHHHHHH
T ss_pred HHHHHhhchHHHHHHHH
Confidence 99999999999887743
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1.4e-17 Score=166.95 Aligned_cols=296 Identities=10% Similarity=-0.047 Sum_probs=195.2
Q ss_pred cCCChHHHHH-HHhcCCCC-------CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCChH
Q 037414 104 LHKALTDAHA-LFNGMKER-------DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIV 175 (577)
Q Consensus 104 ~~g~~~~A~~-~f~~m~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 175 (577)
-.|++++|.. .|++.... +...|..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 3456666666 66644321 23456666666777777777777777776642 224455666666666667777
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCC
Q 037414 176 MGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGS 255 (577)
Q Consensus 176 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~ 255 (577)
+|...++++++.. +.+..++..+..+|...|++++|.+.|+++.+.++.. ...+..+...
T Consensus 116 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------------~~~~~~~~~~------ 175 (368)
T 1fch_A 116 LAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAY-------------AHLVTPAEEG------ 175 (368)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT-------------GGGCC-----------
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-------------HHHHHHHHHH------
Confidence 7777766666654 4455666666666666666666666666554322111 1111000000
Q ss_pred HHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhH
Q 037414 256 IDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLP-NRITFVSLLYACSHTGLVEEGLRLFSSMWD 334 (577)
Q Consensus 256 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 334 (577)
.. ...+ ...+..+...+ ..|++++|...|+++.+..... +..++..+...+...|++++|...++.+++
T Consensus 176 -~~-------~~~~-~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 245 (368)
T 1fch_A 176 -AG-------GAGL-GPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS 245 (368)
T ss_dssp -------------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -hh-------hhcc-cHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 00 0000 01111223333 7889999999999988753221 477888888999999999999999999875
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----
Q 037414 335 DFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQN----- 407 (577)
Q Consensus 335 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~----- 407 (577)
. .+.+...+..+...|.+.|++++|.+.|+++ ...| +..+|..+...+...|++++|...++++++..|++
T Consensus 246 ~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 323 (368)
T 1fch_A 246 V--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRG 323 (368)
T ss_dssp H--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC-----
T ss_pred h--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccc
Confidence 4 2335778889999999999999999999887 3344 56789999999999999999999999999988877
Q ss_pred ------chhHHHHHHHHhccCChhHHHHHHH
Q 037414 408 ------PGHYVLLSNVYANAGRWQDVAKIRD 432 (577)
Q Consensus 408 ------~~~~~~l~~~~~~~g~~~~A~~~~~ 432 (577)
..+|..++.+|...|++++|..++.
T Consensus 324 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 324 EGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp -CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred cccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 7899999999999999999998875
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.74 E-value=9.5e-16 Score=161.83 Aligned_cols=338 Identities=12% Similarity=0.071 Sum_probs=256.6
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHH
Q 037414 91 NLIVANKLLYIYALHKALTDAHALFNGMKE---RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRA 167 (577)
Q Consensus 91 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 167 (577)
....+..+...|.+.|++++|...|+++.+ .+...|..+...|.+.|++++|++.|++..+.+ +.+..++..+...
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 356678888899999999999999998754 367789999999999999999999999998863 2356778888888
Q ss_pred HhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCCh----------hHHHHHHhc----
Q 037414 168 CRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDL----------VTWTVMIGA---- 233 (577)
Q Consensus 168 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----------~~~~~~i~~---- 233 (577)
+...|++++|...++ .... .|+ .....+..+...+...+|...++++...++ ......+..
T Consensus 103 ~~~~g~~~~A~~~~~-~~~~--~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLS-VLSL--NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHcCCHHHHHHHHH-HHhc--CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 999999999999996 3322 222 223334556666667888888888755311 111111100
Q ss_pred -------CCCCcc---hhhHHHHHHHHHh--------cCCHHHHHHHHHhccC--CC--------hhhHHHHHHHHHHcC
Q 037414 234 -------NKFLLD---VILGTAVIDMYAK--------CGSIDSAREIFDRMRQ--KN--------VISWSAMIAAYGYHG 285 (577)
Q Consensus 234 -------~g~~~~---~~~~~~Li~~~~~--------~g~~~~A~~~~~~~~~--~~--------~~~~~~li~~~~~~g 285 (577)
.....+ ......+...+.. .|++++|..+|+++.+ |+ ..+|..+...+...|
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~ 257 (537)
T 3fp2_A 178 LEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKN 257 (537)
T ss_dssp HHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcc
Confidence 001111 1133444443332 2588999999999876 33 225677778889999
Q ss_pred ChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 037414 286 QGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLI 365 (577)
Q Consensus 286 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 365 (577)
++++|...|+++.+. .|+...+..+...+...|++++|...++.+.+. .+.+...+..+...|...|++++|.+.+
T Consensus 258 ~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 333 (537)
T 3fp2_A 258 NLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDL--NPEYPPTYYHRGQMYFILQDYKNAKEDF 333 (537)
T ss_dssp CHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhcc--CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 999999999999985 566778888999999999999999999999764 2345788999999999999999999999
Q ss_pred HhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCC
Q 037414 366 ESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 366 ~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
++. ...| +...|..+...+...|++++|...++++.+..|.++..+..++.+|...|++++|.+.+++..+..
T Consensus 334 ~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 334 QKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 987 3334 456899999999999999999999999999999999999999999999999999999999987654
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.2e-17 Score=164.32 Aligned_cols=273 Identities=10% Similarity=-0.099 Sum_probs=170.3
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 037414 123 SVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDM 202 (577)
Q Consensus 123 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 202 (577)
...|..+...+.+.|++++|++.|+++.+.. +.+..++..+...+...|++++|...++++++.. +.+..++..+..+
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3345555556666666666666666655532 1234455555555555555555555555555543 3334555555555
Q ss_pred HHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHH
Q 037414 203 YAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYG 282 (577)
Q Consensus 203 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 282 (577)
|...|++++|...|+++.+.++.. ...+..+. .....+..+...+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~-------------~~~~~~~~---------------------~~~~~~~~l~~~~~ 188 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKY-------------KYLVKNKK---------------------GSPGLTRRMSKSPV 188 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHH-------------HCC----------------------------------------
T ss_pred HHccccHHHHHHHHHHHHHhCccc-------------hHHHhhhc---------------------cchHHHHHHHHHHh
Confidence 555555555555555443211110 00000000 01223444567777
Q ss_pred HcCChHHHHHHHHHhhhCCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 037414 283 YHGQGKKALDLFPMMLSSRVL-PNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEA 361 (577)
Q Consensus 283 ~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 361 (577)
..|++++|...|+++.+.... ++..++..+...+...|++++|...++.+++. .+.+...|..+...|.+.|++++|
T Consensus 189 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A 266 (365)
T 4eqf_A 189 DSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEA 266 (365)
T ss_dssp CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 788888888888888775322 15677788888888888888888888888754 234577888888888889999999
Q ss_pred HHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------------CchhHHHHHHHHhccCChhHH
Q 037414 362 LKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQ------------NPGHYVLLSNVYANAGRWQDV 427 (577)
Q Consensus 362 ~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A 427 (577)
.+.|++. ...| +..+|..+...+...|++++|...++++++..|. +...|..+..++...|+.+.+
T Consensus 267 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 346 (365)
T 4eqf_A 267 VEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELF 346 (365)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHH
Confidence 9888877 3345 4668888889999999999999999999887765 357789999999999999988
Q ss_pred HHHHHH
Q 037414 428 AKIRDL 433 (577)
Q Consensus 428 ~~~~~~ 433 (577)
.++.+.
T Consensus 347 ~~~~~~ 352 (365)
T 4eqf_A 347 QAANLG 352 (365)
T ss_dssp HHHHTT
T ss_pred HHHHHh
Confidence 877643
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.6e-17 Score=164.65 Aligned_cols=312 Identities=13% Similarity=0.092 Sum_probs=149.8
Q ss_pred hhhHHHHHHhccChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCCh
Q 037414 60 PKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADF 139 (577)
Q Consensus 60 ~~~~~~ll~a~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~ 139 (577)
......+|..+++++.|.+.++.+ +++.+|..|..++.+.|++++|.+.|.+. +|...|..++.++...|++
T Consensus 6 ~~a~~~ll~~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~ 77 (449)
T 1b89_A 6 TSAVQVLIEHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNW 77 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCH
Confidence 344566788888899999998887 33459999999999999999999999764 5777999999999999999
Q ss_pred hHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhC
Q 037414 140 INCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQM 219 (577)
Q Consensus 140 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 219 (577)
++|+..++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+.+.|...|++++|...|..+
T Consensus 78 EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a 148 (449)
T 1b89_A 78 EELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 148 (449)
T ss_dssp ---------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT
T ss_pred HHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 9999977766663 4567889999999999999999988874 467789999999999999999999999987
Q ss_pred CCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHhhh
Q 037414 220 PTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLS 299 (577)
Q Consensus 220 ~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 299 (577)
. .|..|++++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+.
T Consensus 149 ~---------------------n~~~LA~~L~~Lg~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~- 204 (449)
T 1b89_A 149 S---------------------NFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLHIV- 204 (449)
T ss_dssp T---------------------CHHHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-
T ss_pred h---------------------hHHHHHHHHHHhccHHHHHHHHHHc--CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-
Confidence 3 4678899999999999999999999 488999999999999999999976655433
Q ss_pred CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-CHHHHHHHHHHHHHc--CCHHHHHHHHHhC-CCCC---
Q 037414 300 SRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP-DVKHYTCMVDLLGRA--GRLDEALKLIESM-SVEK--- 372 (577)
Q Consensus 300 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~--g~~~~A~~~~~~m-~~~p--- 372 (577)
+.|+. ...++..|.+.|.+++|..+++..+ |+.+ ....|+-|.-+|++- +++.+..+.|..- .+.|
T Consensus 205 --~~ad~--l~~lv~~Yek~G~~eEai~lLe~aL---~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~ 277 (449)
T 1b89_A 205 --VHADE--LEELINYYQDRGYFEELITMLEAAL---GLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLR 277 (449)
T ss_dssp --TCHHH--HHHHHHHHHHTTCHHHHHHHHHHHT---TSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHH
T ss_pred --hCHhh--HHHHHHHHHHCCCHHHHHHHHHHHh---CCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHH
Confidence 34544 4468899999999999999999887 4443 467778777777764 5677777777543 4333
Q ss_pred ---CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc------------CCCCchhHHHHHHHHh
Q 037414 373 ---DEGLWGALLGACRIHKNVDLAEMAAKSLLER------------QPQNPGHYVLLSNVYA 419 (577)
Q Consensus 373 ---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------------~p~~~~~~~~l~~~~~ 419 (577)
+...|..+...|...++++.|....-+-... .+.+...|.-.+.-|.
T Consensus 278 ~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl 339 (449)
T 1b89_A 278 AAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL 339 (449)
T ss_dssp HHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH
Confidence 4668999999999999999887643322111 3556677776666666
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.71 E-value=5.7e-16 Score=155.08 Aligned_cols=293 Identities=11% Similarity=0.015 Sum_probs=219.3
Q ss_pred hHHHHH-HHHHHHHcCC-CC--CHHHHHHHHHHHHcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhCCChhHHHHH
Q 037414 73 IFQIRQ-VHAQIVAGGT-LT--NLIVANKLLYIYALHKALTDAHALFNGMKE---RDSVSWSVMVGGFSKVADFINCFET 145 (577)
Q Consensus 73 ~~~a~~-~~~~~~~~g~-~~--~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~ 145 (577)
.+.|.. .+....+... .| +...+..+...|.+.|++++|...|+++.+ .+..+|..+...+.+.|++++|++.
T Consensus 41 ~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 120 (368)
T 1fch_A 41 YDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISA 120 (368)
T ss_dssp -----CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHH
Confidence 555555 5554433321 11 345677889999999999999999998754 3677899999999999999999999
Q ss_pred HHHHHHCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChh
Q 037414 146 FREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLV 225 (577)
Q Consensus 146 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 225 (577)
|+++.+.. +.+..++..+...+...|++++|...+..+++.. +.+...+..+... ... ...
T Consensus 121 ~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~-------~~~-------~~~--- 181 (368)
T 1fch_A 121 LRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEG-------AGG-------AGL--- 181 (368)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC----------------------------
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH-------hhh-------hcc---
Confidence 99999863 3367788899999999999999999999999875 2222222211110 000 000
Q ss_pred HHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC--C---ChhhHHHHHHHHHHcCChHHHHHHHHHhhhC
Q 037414 226 TWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ--K---NVISWSAMIAAYGYHGQGKKALDLFPMMLSS 300 (577)
Q Consensus 226 ~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~--~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 300 (577)
...+..+...+ ..|++++|...|+++.+ | +...|..+...|...|++++|...|+++...
T Consensus 182 --------------~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 246 (368)
T 1fch_A 182 --------------GPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV 246 (368)
T ss_dssp ------------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --------------cHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 00111223334 88999999999999864 3 4678999999999999999999999999875
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-------
Q 037414 301 RVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK------- 372 (577)
Q Consensus 301 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p------- 372 (577)
. +.+..++..+...+...|++++|...++.+++. .+.+...+..+...|.+.|++++|.+.|++. ...|
T Consensus 247 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 323 (368)
T 1fch_A 247 R-PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRG 323 (368)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC-----
T ss_pred C-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccc
Confidence 2 345778899999999999999999999999764 2345788999999999999999999999887 1122
Q ss_pred -----CHhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037414 373 -----DEGLWGALLGACRIHKNVDLAEMAAKSLLE 402 (577)
Q Consensus 373 -----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 402 (577)
...+|..+..++...|+.++|..++++.++
T Consensus 324 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 324 EGGAMSENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp -CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred cccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 157999999999999999999988775443
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.9e-16 Score=156.37 Aligned_cols=266 Identities=10% Similarity=0.031 Sum_probs=209.6
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHH
Q 037414 91 NLIVANKLLYIYALHKALTDAHALFNGMKE---RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRA 167 (577)
Q Consensus 91 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 167 (577)
+...+..+...|.+.|++++|...|+++.+ .+..+|..+...|.+.|++++|++.|++..+.. +.+..++..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 344588889999999999999999998754 367789999999999999999999999999863 2357788999999
Q ss_pred HhcCCChHHHHHHHHHHHHcCCCCcH-HHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHH
Q 037414 168 CRDRKDIVMGRLIHDIVLKSGLDIDQ-FVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAV 246 (577)
Q Consensus 168 ~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~L 246 (577)
+...|++++|...++++++.. |+. ..+..+. ....++..+
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~-------------------------------------~~~~~~~~l 183 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN--PKYKYLVKNKK-------------------------------------GSPGLTRRM 183 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--HHHHCC---------------------------------------------------
T ss_pred HHccccHHHHHHHHHHHHHhC--ccchHHHhhhc-------------------------------------cchHHHHHH
Confidence 999999999999999998863 221 1111110 022345567
Q ss_pred HHHHHhcCCHHHHHHHHHhccC--C---ChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCC
Q 037414 247 IDMYAKCGSIDSAREIFDRMRQ--K---NVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGL 321 (577)
Q Consensus 247 i~~~~~~g~~~~A~~~~~~~~~--~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 321 (577)
...|.+.|++++|...|+++.+ | +...|..+...|...|++++|++.|+++.+.. +.+..++..+..+|...|+
T Consensus 184 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 262 (365)
T 4eqf_A 184 SKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDR 262 (365)
T ss_dssp -----CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 8889999999999999999864 3 57789999999999999999999999998763 4467889999999999999
Q ss_pred HHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-------------CHhHHHHHHHHHHhc
Q 037414 322 VEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-------------DEGLWGALLGACRIH 387 (577)
Q Consensus 322 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-------------~~~~~~~ll~~~~~~ 387 (577)
+++|...|+.+++. .+.+...+..+...|.+.|++++|.+.|++. ...| +..+|..+..++...
T Consensus 263 ~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 340 (365)
T 4eqf_A 263 SEEAVEAYTRALEI--QPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLM 340 (365)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHc
Confidence 99999999999864 2334788999999999999999999999987 1111 256899999999999
Q ss_pred CCHHHHHHHHHH
Q 037414 388 KNVDLAEMAAKS 399 (577)
Q Consensus 388 g~~~~a~~~~~~ 399 (577)
|+.+.+..+.++
T Consensus 341 g~~~~a~~~~~~ 352 (365)
T 4eqf_A 341 DQPELFQAANLG 352 (365)
T ss_dssp TCHHHHHHHHTT
T ss_pred CcHHHHHHHHHh
Confidence 999988877665
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.5e-17 Score=177.37 Aligned_cols=129 Identities=11% Similarity=0.106 Sum_probs=115.3
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHhcc-------CCChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHH
Q 037414 239 DVILGTAVIDMYAKCGSIDSAREIFDRMR-------QKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVS 311 (577)
Q Consensus 239 ~~~~~~~Li~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 311 (577)
-..+||+||++|+++|++++|.++|++|. .||++|||+||.+|++.|+.++|.++|++|.+.|+.||.+||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 46689999999999999999999998764 48999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCC-HHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 037414 312 LLYACSHTGL-VEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM 368 (577)
Q Consensus 312 ll~a~~~~g~-~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 368 (577)
+|.++++.|+ .++|.++|++|.++ |+.||..+|++++....+.+-++.+.++...+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence 9999999998 57899999999765 99999999999998888776555555554433
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=9.5e-18 Score=178.87 Aligned_cols=155 Identities=13% Similarity=0.102 Sum_probs=127.1
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHhcCC-------CCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchH
Q 037414 89 LTNLIVANKLLYIYALHKALTDAHALFNGMK-------ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTL 161 (577)
Q Consensus 89 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 161 (577)
..-..+||+||++|+++|++++|.++|++|. .||+++||+||.+|++.|++++|.++|++|.+.|+.||.+||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 3345689999999999999999999997753 579999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCh-HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcch
Q 037414 162 PFVIRACRDRKDI-VMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDV 240 (577)
Q Consensus 162 ~~ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~ 240 (577)
+++|.++++.|+. ++|.+++++|.+.|+.||..+|++++..+.+.+-++...+++..+.-+ . .-.|..
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~-~----------~~~~~~ 272 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLP-P----------QLPPPV 272 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCC-C----------CCCCCC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCC-C----------CCcccc
Confidence 9999999999885 789999999999999999999999998887765555555554433221 0 011224
Q ss_pred hhHHHHHHHHHhcC
Q 037414 241 ILGTAVIDMYAKCG 254 (577)
Q Consensus 241 ~~~~~Li~~~~~~g 254 (577)
.+...|.+.|.+.+
T Consensus 273 ~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 273 NTSKLLRDVYAKDG 286 (1134)
T ss_dssp CCCTTTHHHHCCCS
T ss_pred cchHHHHHHHccCC
Confidence 44555777777655
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1.3e-15 Score=149.55 Aligned_cols=276 Identities=10% Similarity=-0.043 Sum_probs=193.1
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 037414 122 DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVD 201 (577)
Q Consensus 122 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 201 (577)
+...|..+...+...|++++|+.+|+++.+.. +.+..++..+...+...|++++|...++++++.. +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 34456666777777777777777777777642 2245566666666777777777777777776663 445666666777
Q ss_pred HHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHH--
Q 037414 202 MYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIA-- 279 (577)
Q Consensus 202 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~-- 279 (577)
.|...|++++|.+.|+++.+.++. +...+..+.... ++......+..
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~-------------~~~~~~~~~~~~------------------~~~~~~~~~~~~~ 146 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQ-------------YEQLGSVNLQAD------------------VDIDDLNVQSEDF 146 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTT-------------TTTC--------------------------------------C
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCc-------------cHHHHHHHhHHH------------------HHHHHHHHHHHhH
Confidence 777777777777776665432211 111111110000 01111111212
Q ss_pred HHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHH
Q 037414 280 AYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLD 359 (577)
Q Consensus 280 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 359 (577)
.+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+. .+.+...+..+...|.+.|+++
T Consensus 147 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~ 223 (327)
T 3cv0_A 147 FFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQ 223 (327)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHH
Confidence 2666788888888888887753 336677888888888999999999999988754 2345778888999999999999
Q ss_pred HHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------------CchhHHHHHHHHhccCChh
Q 037414 360 EALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQ------------NPGHYVLLSNVYANAGRWQ 425 (577)
Q Consensus 360 ~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~ 425 (577)
+|.+.++++ ...| +..+|..+...+...|++++|...++++++..|. ++..+..+..+|...|+++
T Consensus 224 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 303 (327)
T 3cv0_A 224 EALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPD 303 (327)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHH
Confidence 999999887 3334 5678999999999999999999999999999988 6889999999999999999
Q ss_pred HHHHHHHH
Q 037414 426 DVAKIRDL 433 (577)
Q Consensus 426 ~A~~~~~~ 433 (577)
+|..++++
T Consensus 304 ~A~~~~~~ 311 (327)
T 3cv0_A 304 LVELTYAQ 311 (327)
T ss_dssp HHHHHTTC
T ss_pred HHHHHHHH
Confidence 99998864
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.2e-15 Score=145.69 Aligned_cols=270 Identities=9% Similarity=0.020 Sum_probs=168.8
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCCc--chHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHH
Q 037414 133 FSKVADFINCFETFREFIRCGMQLDS--YTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID 210 (577)
Q Consensus 133 ~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 210 (577)
....|++..|+..++.... ..|+. .....+.+++...|+++.|...++. .-+|+..++..+...|...|+.+
T Consensus 9 ~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHH
Confidence 3345555555555544332 22222 2333445555556666555543322 12445555566666666666666
Q ss_pred HHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHH
Q 037414 211 DARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKA 290 (577)
Q Consensus 211 ~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 290 (577)
+|.+.++++...+. .+.+..++..+...|...|++++|.+.|++ ..+...+..++..|.+.|++++|
T Consensus 83 ~A~~~l~~ll~~~~-----------~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A 149 (291)
T 3mkr_A 83 AIVAELDREMSRSV-----------DVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLA 149 (291)
T ss_dssp HHHHHHHHHHHSCC-----------CCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhccc-----------CCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHH
Confidence 66666665432100 011344455556666666777777766666 34566777777778888888888
Q ss_pred HHHHHHhhhCCCCCCHHHH---HHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 037414 291 LDLFPMMLSSRVLPNRITF---VSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIES 367 (577)
Q Consensus 291 ~~l~~~m~~~g~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 367 (577)
.+.|+++.+.. |+.... ...+..+...|++++|..+|+++++. .+.+...++.+..+|.+.|++++|++.|++
T Consensus 150 ~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~ 225 (291)
T 3mkr_A 150 RKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQE 225 (291)
T ss_dssp HHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888877653 443211 12233344568889999999988765 345678888888889999999999999888
Q ss_pred C-CCCC-CHhHHHHHHHHHHhcCCHHH-HHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHH
Q 037414 368 M-SVEK-DEGLWGALLGACRIHKNVDL-AEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAK 429 (577)
Q Consensus 368 m-~~~p-~~~~~~~ll~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 429 (577)
. ...| +..+|..++..+...|+.++ +.++++++++.+|+++.+. +...+.+.++++..
T Consensus 226 al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 226 ALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVL 286 (291)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHH
Confidence 6 4445 56688888888888888865 5788899999999987543 34444444444443
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.3e-13 Score=143.85 Aligned_cols=335 Identities=14% Similarity=0.091 Sum_probs=279.2
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----CCChHHHHHHHhcCCCC-CcchHHHHHHHHHh----CCChhHH
Q 037414 72 NIFQIRQVHAQIVAGGTLTNLIVANKLLYIYAL----HKALTDAHALFNGMKER-DSVSWSVMVGGFSK----VADFINC 142 (577)
Q Consensus 72 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~f~~m~~~-~~~~~~~li~~~~~----~g~~~~A 142 (577)
+.+.|...+....+.| ++..+..|-.+|.. .++.++|.+.|++..+. +...+..|...|.. .+++++|
T Consensus 58 ~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A 134 (490)
T 2xm6_A 58 DLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAES 134 (490)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 3888999999988875 56778888899998 89999999999987654 67778888888888 8899999
Q ss_pred HHHHHHHHHCCCCCCcchHHHHHHHHhc----CCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh----CCCHHHHHH
Q 037414 143 FETFREFIRCGMQLDSYTLPFVIRACRD----RKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAK----CKVIDDARQ 214 (577)
Q Consensus 143 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~ 214 (577)
++.|++..+.| +...+..+...|.. .++.++|.+.+++..+.| +...+..|..+|.. .++.++|.+
T Consensus 135 ~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 208 (490)
T 2xm6_A 135 VKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQ 208 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHH
Confidence 99999998875 55667777777766 789999999999998875 67788889999998 899999999
Q ss_pred HHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHh----cCCHHHHHHHHHhccC-CChhhHHHHHHHHHH----cC
Q 037414 215 LFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAK----CGSIDSAREIFDRMRQ-KNVISWSAMIAAYGY----HG 285 (577)
Q Consensus 215 ~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g 285 (577)
.|++..+.+ +...+..|..+|.. .++.++|..+|++..+ .+...+..+...|.. .+
T Consensus 209 ~~~~a~~~~---------------~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~ 273 (490)
T 2xm6_A 209 WYRKSATSG---------------DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAK 273 (490)
T ss_dssp HHHHHHHTT---------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSC
T ss_pred HHHHHHHCC---------------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCC
Confidence 998865432 45567778888887 8999999999998765 566778888888888 89
Q ss_pred ChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcc-----CCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcC---C
Q 037414 286 QGKKALDLFPMMLSSRVLPNRITFVSLLYACSHT-----GLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAG---R 357 (577)
Q Consensus 286 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g---~ 357 (577)
+.++|+..|++..+.| +...+..+...|... ++.++|...++...+. + +...+..+...|.+.| +
T Consensus 274 d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~y~~~g~~~~ 346 (490)
T 2xm6_A 274 EPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---DATAQANLGAIYFRLGSEEE 346 (490)
T ss_dssp CHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHSCCHHH
T ss_pred CHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---CHHHHHHHHHHHHhCCCccc
Confidence 9999999999998775 445666677777776 8999999999999753 3 4567777888887766 7
Q ss_pred HHHHHHHHHhCCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhc----cCChhHHHH
Q 037414 358 LDEALKLIESMSVEKDEGLWGALLGACRI----HKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYAN----AGRWQDVAK 429 (577)
Q Consensus 358 ~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~ 429 (577)
+++|.++|++.-...+...+..|...+.. .++.++|...++++.+.+ ++.++..|..+|.. .+++++|..
T Consensus 347 ~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 424 (490)
T 2xm6_A 347 HKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWA 424 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 89999999987323577888889999888 899999999999998875 46789999999998 899999999
Q ss_pred HHHHHhhCCC
Q 037414 430 IRDLMTRRRL 439 (577)
Q Consensus 430 ~~~~m~~~g~ 439 (577)
.+++..+.+.
T Consensus 425 ~~~~A~~~~~ 434 (490)
T 2xm6_A 425 WFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHCCC
Confidence 9999988763
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.69 E-value=4e-15 Score=143.80 Aligned_cols=245 Identities=12% Similarity=0.026 Sum_probs=198.6
Q ss_pred HHhcCCChHHHHHHHHHHHHcCCCCcH--HHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHH
Q 037414 167 ACRDRKDIVMGRLIHDIVLKSGLDIDQ--FVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGT 244 (577)
Q Consensus 167 ~~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~ 244 (577)
.....|+++.|....+..... .|+. .....+..+|...|+++.|...++.. + +|+...+.
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~---~-------------~~~~~a~~ 69 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKPS---S-------------APELQAVR 69 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT---S-------------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhccc---C-------------ChhHHHHH
Confidence 344578999988887665432 3443 45566789999999999999877652 1 34667788
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccC----C-ChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcc
Q 037414 245 AVIDMYAKCGSIDSAREIFDRMRQ----K-NVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHT 319 (577)
Q Consensus 245 ~Li~~~~~~g~~~~A~~~~~~~~~----~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 319 (577)
.+...|...|+.++|.+.++++.. | +...+..+...+.+.|++++|++.+++ +.+...+..+...+.+.
T Consensus 70 ~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~ 143 (291)
T 3mkr_A 70 MFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKL 143 (291)
T ss_dssp HHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHC
Confidence 899999999999999999998742 4 455677778999999999999999987 45777888899999999
Q ss_pred CCHHHHHHHHHHhhHhcCCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHhHHHHHHHHHHhcCCHHHHH
Q 037414 320 GLVEEGLRLFSSMWDDFAVRPDVKH---YTCMVDLLGRAGRLDEALKLIESM--SVEKDEGLWGALLGACRIHKNVDLAE 394 (577)
Q Consensus 320 g~~~~a~~~~~~m~~~~~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~ 394 (577)
|++++|.+.++.+.+. .|+... ..+++..+...|++++|..+|+++ ....+...|+.+..++...|++++|+
T Consensus 144 g~~~~A~~~l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~ 220 (291)
T 3mkr_A 144 DRLDLARKELKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAE 220 (291)
T ss_dssp TCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999764 355321 223445555669999999999998 22347779999999999999999999
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHhccCChhH-HHHHHHHHhhCC
Q 037414 395 MAAKSLLERQPQNPGHYVLLSNVYANAGRWQD-VAKIRDLMTRRR 438 (577)
Q Consensus 395 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~g 438 (577)
..++++++.+|+++.++..++..+...|++++ +.++++++.+..
T Consensus 221 ~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 221 GVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999976 578888887644
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.67 E-value=1.6e-13 Score=144.76 Aligned_cols=367 Identities=9% Similarity=0.015 Sum_probs=226.0
Q ss_pred ChhhHHHHHHhc--cChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHhcCCC--CCcchHHHHHHHH-
Q 037414 59 DPKFFISSLLSC--RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKE--RDSVSWSVMVGGF- 133 (577)
Q Consensus 59 ~~~~~~~ll~a~--~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~- 133 (577)
|...|..++... ++.+.|+.+++.+++.- +.+...|..++..+.+.|++++|..+|++... |++..|...+...
T Consensus 12 ~~~~w~~l~~~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~ 90 (530)
T 2ooe_A 12 DLDAWSILIREAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVR 90 (530)
T ss_dssp CHHHHHHHHHHHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 455566555542 33888999999888763 66788899999999999999999999988765 5666677766532
Q ss_pred HhCCChhHHHH----HHHHHHH-CCCCCC-cchHHHHHHHHhc---------CCChHHHHHHHHHHHHcCCCCcHHHHHH
Q 037414 134 SKVADFINCFE----TFREFIR-CGMQLD-SYTLPFVIRACRD---------RKDIVMGRLIHDIVLKSGLDIDQFVCAA 198 (577)
Q Consensus 134 ~~~g~~~~A~~----~~~~m~~-~g~~p~-~~t~~~ll~~~~~---------~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 198 (577)
...|+.++|.+ +|+.... .|..|+ ...|...+....+ .|+++.|..+|++.++.........|..
T Consensus 91 ~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~ 170 (530)
T 2ooe_A 91 ETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRD 170 (530)
T ss_dssp HHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHH
T ss_pred HHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHH
Confidence 34677776655 6666654 355553 3455555554433 5778888999988887311111233433
Q ss_pred HHHHH-------------HhCCCHHHHHHHHhhC------CCCChhHHHHHHhcCCCCcc--------hhhHHHHHHHHH
Q 037414 199 LVDMY-------------AKCKVIDDARQLFDQM------PTRDLVTWTVMIGANKFLLD--------VILGTAVIDMYA 251 (577)
Q Consensus 199 li~~~-------------~~~g~~~~A~~~~~~m------~~~~~~~~~~~i~~~g~~~~--------~~~~~~Li~~~~ 251 (577)
..... .+.++++.|..++.++ .++.. ..++|+ ...|...+....
T Consensus 171 ~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~---------~~~~p~~~~~~~~~~~~w~~~~~~e~ 241 (530)
T 2ooe_A 171 YNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNA---------PSVPPQNTPQEAQQVDMWKKYIQWEK 241 (530)
T ss_dssp HHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSS---------CCCCCC--CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcccc---------ccCCCCCChhHHHHHHHHHHHHHHHH
Confidence 32211 1234566676655541 11100 001221 234444443332
Q ss_pred hc----CCH----HHHHHHHHhccC---CChhhHHHHHHHHHH-------cCChH-------HHHHHHHHhhhCCCCCCH
Q 037414 252 KC----GSI----DSAREIFDRMRQ---KNVISWSAMIAAYGY-------HGQGK-------KALDLFPMMLSSRVLPNR 306 (577)
Q Consensus 252 ~~----g~~----~~A~~~~~~~~~---~~~~~~~~li~~~~~-------~g~~~-------~A~~l~~~m~~~g~~p~~ 306 (577)
.. ++. +.|..+|++... .+...|...+..+.+ .|+.+ +|.++|++..+.-.+-+.
T Consensus 242 ~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~ 321 (530)
T 2ooe_A 242 SNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNM 321 (530)
T ss_dssp HCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCH
T ss_pred cCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccH
Confidence 21 222 355666666653 345667777666665 57766 777777777652122345
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HhHHHHHHH
Q 037414 307 ITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD--VKHYTCMVDLLGRAGRLDEALKLIESM-SVEKD-EGLWGALLG 382 (577)
Q Consensus 307 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~ 382 (577)
..+..++..+.+.|++++|..+|+.+++ +.|+ ...|..++..+.+.|++++|.++|++. ...|+ ...|.....
T Consensus 322 ~l~~~~~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~ 398 (530)
T 2ooe_A 322 LLYFAYADYEESRMKYEKVHSIYNRLLA---IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAAL 398 (530)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhC---ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHH
Confidence 6667777777777888888888887764 3443 246777777777777788888877776 32332 222222221
Q ss_pred H-HHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCC
Q 037414 383 A-CRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 383 ~-~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
. +...|+.++|..+|+++++..|+++..|..++..+.+.|+.++|..++++....+
T Consensus 399 ~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 399 MEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 2 2357778888888888877777777777777777777888888888887777653
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.67 E-value=2.3e-15 Score=147.70 Aligned_cols=275 Identities=10% Similarity=0.001 Sum_probs=213.5
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHH
Q 037414 91 NLIVANKLLYIYALHKALTDAHALFNGMKE---RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRA 167 (577)
Q Consensus 91 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 167 (577)
+...+..+...+...|++++|..+|+++.+ .+...|..+...+.+.|++++|.+.|+++.+.. +.+..++..+...
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 344566778889999999999999998753 367789999999999999999999999999863 3366788888899
Q ss_pred HhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHH
Q 037414 168 CRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVI 247 (577)
Q Consensus 168 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li 247 (577)
+...|++++|...++.+.+.. +.+...+..+.... |+......+.
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~ 143 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQAD----------------------------------VDIDDLNVQS 143 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTS-TTTTTC----------------------------------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHH----------------------------------HHHHHHHHHH
Confidence 999999999999999998864 22222222221110 0111111221
Q ss_pred H--HHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCH
Q 037414 248 D--MYAKCGSIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322 (577)
Q Consensus 248 ~--~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 322 (577)
. .+...|++++|...++++.+ .+...+..+...|...|++++|.+.++++.+.. +.+..++..+...+...|++
T Consensus 144 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 222 (327)
T 3cv0_A 144 EDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRP 222 (327)
T ss_dssp --CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCH
Confidence 2 36778999999999998764 467789999999999999999999999998763 34577888999999999999
Q ss_pred HHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-------------HhHHHHHHHHHHhcC
Q 037414 323 EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEKD-------------EGLWGALLGACRIHK 388 (577)
Q Consensus 323 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-------------~~~~~~ll~~~~~~g 388 (577)
++|...++.+++. .+.+...+..+...|.+.|++++|.+.+++. ...|+ ..+|..+..++...|
T Consensus 223 ~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 300 (327)
T 3cv0_A 223 QEALDAYNRALDI--NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMN 300 (327)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcC
Confidence 9999999999764 2345788899999999999999999999887 22333 568999999999999
Q ss_pred CHHHHHHHHHHHHhcC
Q 037414 389 NVDLAEMAAKSLLERQ 404 (577)
Q Consensus 389 ~~~~a~~~~~~~~~~~ 404 (577)
+.++|..++++.++..
T Consensus 301 ~~~~A~~~~~~~l~~~ 316 (327)
T 3cv0_A 301 RPDLVELTYAQNVEPF 316 (327)
T ss_dssp CHHHHHHHTTCCSHHH
T ss_pred CHHHHHHHHHHHHHhc
Confidence 9999999988766543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.66 E-value=2.7e-13 Score=142.96 Aligned_cols=349 Identities=11% Similarity=0.118 Sum_probs=245.4
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHhcCCC--C-CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 037414 80 HAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKE--R-DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQL 156 (577)
Q Consensus 80 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 156 (577)
++..++.. +-+...|..++. +.+.|++++|+.+|+++.+ | +...|...+..+.+.|++++|..+|++.... .|
T Consensus 2 le~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p 77 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VL 77 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CC
T ss_pred hhhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CC
Confidence 34444443 668889999998 4789999999999999866 3 5667999999999999999999999999985 47
Q ss_pred CcchHHHHHHH-HhcCCChHHHHH----HHHHHHHc-CCC-CcHHHHHHHHHHHHh---------CCCHHHHHHHHhhCC
Q 037414 157 DSYTLPFVIRA-CRDRKDIVMGRL----IHDIVLKS-GLD-IDQFVCAALVDMYAK---------CKVIDDARQLFDQMP 220 (577)
Q Consensus 157 ~~~t~~~ll~~-~~~~~~~~~a~~----~~~~~~~~-g~~-~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~ 220 (577)
+...|...+.. ....|+.+.|++ +|+..++. |.. ++...|...+....+ .|+++.|.++|++..
T Consensus 78 ~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al 157 (530)
T 2ooe_A 78 HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGC 157 (530)
T ss_dssp CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHH
Confidence 77777666653 234566666554 77776654 543 356788888887765 689999999999876
Q ss_pred CC-Ch---hHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhc------cC-------CC--------hhhHH
Q 037414 221 TR-DL---VTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRM------RQ-------KN--------VISWS 275 (577)
Q Consensus 221 ~~-~~---~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~------~~-------~~--------~~~~~ 275 (577)
+. .. ..|.....- ....+..+...++. .+.++++.|..++..+ .+ |+ ...|.
T Consensus 158 ~~P~~~~~~~~~~~~~~-e~~~~~~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~ 234 (530)
T 2ooe_A 158 VNPMINIEQLWRDYNKY-EEGINIHLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWK 234 (530)
T ss_dssp TSCCTTHHHHHHHHHHH-HHHHCHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHH
T ss_pred hchhhhHHHHHHHHHHH-HHhhchhHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHH
Confidence 52 10 112111000 00000000111111 1345677787776651 11 22 24566
Q ss_pred HHHHHHHHc----CCh----HHHHHHHHHhhhCCCCCCHHHHHHHHHHHhc-------cCCHH-------HHHHHHHHhh
Q 037414 276 AMIAAYGYH----GQG----KKALDLFPMMLSSRVLPNRITFVSLLYACSH-------TGLVE-------EGLRLFSSMW 333 (577)
Q Consensus 276 ~li~~~~~~----g~~----~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~-------~g~~~-------~a~~~~~~m~ 333 (577)
..+...... ++. .+|..+|++.... .+-+...|..+...+.+ .|+++ +|..+++..+
T Consensus 235 ~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al 313 (530)
T 2ooe_A 235 KYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAI 313 (530)
T ss_dssp HHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHH
Confidence 655443332 232 4788899998875 23456677777777765 68876 9999999997
Q ss_pred HhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-H-hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 037414 334 DDFAVRP-DVKHYTCMVDLLGRAGRLDEALKLIESM-SVEKD-E-GLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPG 409 (577)
Q Consensus 334 ~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 409 (577)
+ .+.| +...|..++..+.+.|++++|.++|+++ ...|+ . ..|..++..+.+.|+.++|..+|+++++..|.+..
T Consensus 314 ~--~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~ 391 (530)
T 2ooe_A 314 S--TLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHH 391 (530)
T ss_dssp T--TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTH
T ss_pred H--HhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchH
Confidence 4 2445 5888999999999999999999999988 44564 3 48999999999999999999999999999888777
Q ss_pred hHHHHHHH-HhccCChhHHHHHHHHHhhCC
Q 037414 410 HYVLLSNV-YANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 410 ~~~~l~~~-~~~~g~~~~A~~~~~~m~~~g 438 (577)
.|...+.. +...|++++|.++|+...+..
T Consensus 392 ~~~~~a~~~~~~~~~~~~A~~~~e~al~~~ 421 (530)
T 2ooe_A 392 VYVTAALMEYYCSKDKSVAFKIFELGLKKY 421 (530)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHC
Confidence 76655544 346899999999999887643
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.65 E-value=4.1e-13 Score=140.13 Aligned_cols=319 Identities=12% Similarity=0.052 Sum_probs=264.9
Q ss_pred CCHHHHHHHHHHHHc----CCChHHHHHHHhcCCCC-CcchHHHHHHHHHh----CCChhHHHHHHHHHHHCCCCCCcch
Q 037414 90 TNLIVANKLLYIYAL----HKALTDAHALFNGMKER-DSVSWSVMVGGFSK----VADFINCFETFREFIRCGMQLDSYT 160 (577)
Q Consensus 90 ~~~~~~~~li~~~~~----~g~~~~A~~~f~~m~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t 160 (577)
.++.....|-..|.. .++++.|...|++..+. +...+..|...|.. .+++++|++.|++..+.| +...
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a 113 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQA 113 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 367778888888888 89999999999876544 67788889999998 899999999999998865 5566
Q ss_pred HHHHHHHHhc----CCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh----CCCHHHHHHHHhhCCCCChhHHHHHHh
Q 037414 161 LPFVIRACRD----RKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAK----CKVIDDARQLFDQMPTRDLVTWTVMIG 232 (577)
Q Consensus 161 ~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~i~ 232 (577)
+..|-..+.. .+++++|...+++..+.| +...+..|..+|.. .++.++|.+.|++..+.+
T Consensus 114 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~--------- 181 (490)
T 2xm6_A 114 QQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG--------- 181 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---------
Confidence 7777777777 789999999999998876 56778888899987 889999999999865432
Q ss_pred cCCCCcchhhHHHHHHHHHh----cCCHHHHHHHHHhccC-CChhhHHHHHHHHHH----cCChHHHHHHHHHhhhCCCC
Q 037414 233 ANKFLLDVILGTAVIDMYAK----CGSIDSAREIFDRMRQ-KNVISWSAMIAAYGY----HGQGKKALDLFPMMLSSRVL 303 (577)
Q Consensus 233 ~~g~~~~~~~~~~Li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~ 303 (577)
+...+..|..+|.. .++.++|..+|++..+ .+...+..+...|.. .+++++|..+|++..+.|
T Consensus 182 ------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-- 253 (490)
T 2xm6_A 182 ------NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG-- 253 (490)
T ss_dssp ------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT--
T ss_pred ------CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--
Confidence 55677788999998 8999999999998765 567788888888886 889999999999998875
Q ss_pred CCHHHHHHHHHHHhc----cCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHhCCCCCCH
Q 037414 304 PNRITFVSLLYACSH----TGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRA-----GRLDEALKLIESMSVEKDE 374 (577)
Q Consensus 304 p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~p~~ 374 (577)
+...+..+...|.. .++.++|...|+...+. -+...+..+...|... +++++|.+.|++.-...+.
T Consensus 254 -~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~ 328 (490)
T 2xm6_A 254 -NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ----GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDA 328 (490)
T ss_dssp -CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT----TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCH
T ss_pred -CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCH
Confidence 44556666667766 89999999999998643 3456777788888887 8999999999987323466
Q ss_pred hHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCchhHHHHHHHHhc----cCChhHHHHHHHHHhhCC
Q 037414 375 GLWGALLGACRIHK---NVDLAEMAAKSLLERQPQNPGHYVLLSNVYAN----AGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 375 ~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g 438 (577)
..+..+...+...| +.++|...++++.+. .++..+..|..+|.. .+++++|.+.+++..+.|
T Consensus 329 ~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~ 397 (490)
T 2xm6_A 329 TAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG 397 (490)
T ss_dssp HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC
Confidence 67778888887766 889999999999987 457899999999999 899999999999998876
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.7e-14 Score=149.80 Aligned_cols=342 Identities=10% Similarity=-0.010 Sum_probs=190.3
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHhcCCC------------CCcchHHHHHHHHHhCCChhHHHHHHHHHHHC-----
Q 037414 90 TNLIVANKLLYIYALHKALTDAHALFNGMKE------------RDSVSWSVMVGGFSKVADFINCFETFREFIRC----- 152 (577)
Q Consensus 90 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----- 152 (577)
.....||.|...|...|++++|++.|++..+ ...++|+.+...|...|++++|...|++..+.
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 3456778888888888888888877765421 13456788888888888888888887776542
Q ss_pred C-CCCC-cchHHHHHHHHh--cCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHH---HHhCCCHHHHHHHHhhCCCCChh
Q 037414 153 G-MQLD-SYTLPFVIRACR--DRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDM---YAKCKVIDDARQLFDQMPTRDLV 225 (577)
Q Consensus 153 g-~~p~-~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~~~~ 225 (577)
+ ..++ ..++.....++. ..+++++|...|++.++.. |.+...+..+..+ +...++.++|.+.|++..+.+
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-- 205 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-- 205 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC--
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC--
Confidence 1 1111 233443333332 3456788888888887764 3345555555444 334566666666665543211
Q ss_pred HHHHHHhcCCCCcchhhHHHHHHHHHh----cCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhh
Q 037414 226 TWTVMIGANKFLLDVILGTAVIDMYAK----CGSIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMML 298 (577)
Q Consensus 226 ~~~~~i~~~g~~~~~~~~~~Li~~~~~----~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 298 (577)
+.+..++..+...+.. .|++++|.+.+++..+ .+...+..+...|...|++++|+..|++..
T Consensus 206 -----------p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 274 (472)
T 4g1t_A 206 -----------PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKAL 274 (472)
T ss_dssp -----------SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -----------CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence 1123344444433333 4566777777776543 445567777777888888888888888777
Q ss_pred hCCCCCCHHHHHHHHHHHhcc-------------------CCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHH
Q 037414 299 SSRVLPNRITFVSLLYACSHT-------------------GLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLD 359 (577)
Q Consensus 299 ~~g~~p~~~t~~~ll~a~~~~-------------------g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 359 (577)
+.. +-+..++..+...|... +..++|...++...+. -+.+...+..+...|...|+++
T Consensus 275 ~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~lg~~~~~~~~~~ 351 (472)
T 4g1t_A 275 EYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA--NDNLFRVCSILASLHALADQYE 351 (472)
T ss_dssp HHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH--CTTTCCCHHHHHHHHHHTTCHH
T ss_pred HhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc--CCchhhhhhhHHHHHHHhccHH
Confidence 642 22334444444443221 2245566666666532 1223455666777777888888
Q ss_pred HHHHHHHhC-CCCCCHhH----HHHHHHH-HHhcCCHHHHHHHHHHHHh------------------------cCCCCch
Q 037414 360 EALKLIESM-SVEKDEGL----WGALLGA-CRIHKNVDLAEMAAKSLLE------------------------RQPQNPG 409 (577)
Q Consensus 360 ~A~~~~~~m-~~~p~~~~----~~~ll~~-~~~~g~~~~a~~~~~~~~~------------------------~~p~~~~ 409 (577)
+|.+.|++. ...|+... +..+... ....|+.++|+..++++++ .+|+++.
T Consensus 352 ~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~ 431 (472)
T 4g1t_A 352 EAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSE 431 (472)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTT
T ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 888877765 33443321 2222221 3456777777776666554 4677888
Q ss_pred hHHHHHHHHhccCChhHHHHHHHHHhhCCCccCCceeEE
Q 037414 410 HYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWI 448 (577)
Q Consensus 410 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~s~~ 448 (577)
+|..|..+|...|++++|.+.+++..+.+-..+...+|+
T Consensus 432 ~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 432 ALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHHHHHHHCC-----------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 999999999999999999999999888765544445554
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.61 E-value=8e-13 Score=145.66 Aligned_cols=340 Identities=12% Similarity=0.067 Sum_probs=255.2
Q ss_pred hHHHhhccCCCCCCCCCcccCccCCCCCCCCCCCChhhHHHHHHhccChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 037414 25 TAAIALEPHGHEQNPMNPRVPMQMGPDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYAL 104 (577)
Q Consensus 25 ~~~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~a~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 104 (577)
.....+...|.+++|.++|+..... ......++....+++.|.++.+.+ .++.+|..+..++.+
T Consensus 1054 eIA~Iai~lglyEEAf~IYkKa~~~----------~~A~~VLie~i~nldrAiE~Aerv------n~p~vWsqLAKAql~ 1117 (1630)
T 1xi4_A 1054 DIANIAISNELFEEAFAIFRKFDVN----------TSAVQVLIEHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQ 1117 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCCH----------HHHHHHHHHHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHh
Confidence 3456678889999999998886422 344566677777788888777744 457889999999999
Q ss_pred CCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHH
Q 037414 105 HKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIV 184 (577)
Q Consensus 105 ~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 184 (577)
.|++++|...|.+. .|...|..++..+.+.|++++|++.|...++.. ++....+.+..+|++.+++++...+
T Consensus 1118 ~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f---- 1189 (1630)
T 1xi4_A 1118 KGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF---- 1189 (1630)
T ss_pred CCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH----
Confidence 99999999999765 577788889999999999999999998777653 4444444588889999888854433
Q ss_pred HHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHH
Q 037414 185 LKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFD 264 (577)
Q Consensus 185 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~ 264 (577)
++ .++...+..+.+.|...|++++|...|.... .|..+..+|.+.|++++|.+.++
T Consensus 1190 I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~---------------------ny~rLA~tLvkLge~q~AIEaar 1245 (1630)
T 1xi4_A 1190 IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------------------NFGRLASTLVHLGEYQAAVDGAR 1245 (1630)
T ss_pred Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhh---------------------HHHHHHHHHHHhCCHHHHHHHHH
Confidence 22 3455667779999999999999999998752 46778999999999999999999
Q ss_pred hccCCChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC-HH
Q 037414 265 RMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD-VK 343 (577)
Q Consensus 265 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~ 343 (577)
+. .+..+|..+-.+|...|++..|...... +..+...+..++..|.+.|.+++|+.+++..+ ++.+. ..
T Consensus 1246 KA--~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL---~LeraH~g 1315 (1630)
T 1xi4_A 1246 KA--NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAAL---GLERAHMG 1315 (1630)
T ss_pred Hh--CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh---ccChhHhH
Confidence 87 5568899999999999999888887654 33355567788999999999999999998776 44433 45
Q ss_pred HHHHHHHHHHHc--CCHHHHHHHHHhC-CCCC------CHhHHHHHHHHHHhcCCHHHHHHHHHHHHh------------
Q 037414 344 HYTCMVDLLGRA--GRLDEALKLIESM-SVEK------DEGLWGALLGACRIHKNVDLAEMAAKSLLE------------ 402 (577)
Q Consensus 344 ~~~~li~~~~~~--g~~~~A~~~~~~m-~~~p------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~------------ 402 (577)
.|+-|..+|++. +++.++.+.|.+- .+.| +...|..+...|.+.|+++.|....-+-..
T Consensus 1316 mftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i 1395 (1630)
T 1xi4_A 1316 MFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDII 1395 (1630)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHh
Confidence 566666666654 4666777776554 4333 456899999999999999988832221111
Q ss_pred cCCCCchhHHHHHHHHhccC
Q 037414 403 RQPQNPGHYVLLSNVYANAG 422 (577)
Q Consensus 403 ~~p~~~~~~~~l~~~~~~~g 422 (577)
..+.++..|.-.+.-|...+
T Consensus 1396 ~kv~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1396 TKVANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred cccccHHHHHHHHHHHHhhC
Confidence 13567777777777776655
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.6e-13 Score=126.38 Aligned_cols=195 Identities=15% Similarity=0.055 Sum_probs=158.6
Q ss_pred CcchhhHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 037414 237 LLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLL 313 (577)
Q Consensus 237 ~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 313 (577)
+++...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++..+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 45777888999999999999999999998865 456789999999999999999999999998863 33566788888
Q ss_pred HHHhcc-----------CCHHHHHHHHHHhhHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHhHHHHH
Q 037414 314 YACSHT-----------GLVEEGLRLFSSMWDDFAVRP-DVKHYTCMVDLLGRAGRLDEALKLIESM-SVEKDEGLWGAL 380 (577)
Q Consensus 314 ~a~~~~-----------g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l 380 (577)
.++... |++++|...++..++. .| +...+..+...|...|++++|...|++. ....+...|..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 899999 9999999999999853 45 4778888999999999999999999987 222678899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHh
Q 037414 381 LGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMT 435 (577)
Q Consensus 381 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 435 (577)
...+...|++++|+..++++++.+|+++..+..+..++...|++++|...+++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999887653
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.56 E-value=5e-12 Score=139.43 Aligned_cols=354 Identities=10% Similarity=0.102 Sum_probs=235.1
Q ss_pred hhhHHHhhccCCCCCCCCCcccCccCCCCCCCCCCCChhhHHHHHHhccC--hHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 037414 23 STTAAIALEPHGHEQNPMNPRVPMQMGPDCQFTRSVDPKFFISSLLSCRN--IFQIRQVHAQIVAGGTLTNLIVANKLLY 100 (577)
Q Consensus 23 ~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~a~~~--~~~a~~~~~~~~~~g~~~~~~~~~~li~ 100 (577)
-+..+.+|...|.+.+|+++++.....++ .|...+ ..-+.++.+..+ ...+.+....+-. .+ ..-+..
T Consensus 988 Vs~~vKaf~~aglp~EaieLLEKivl~~s-~fs~n~--~LqnlLi~tAIkaD~~Rv~eyI~kLd~----~d---~~eIA~ 1057 (1630)
T 1xi4_A 988 VSVTVKAFMTADLPNELIELLEKIVLDNS-VFSEHR--NLQNLLILTAIKADRTRVMEYINRLDN----YD---APDIAN 1057 (1630)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHcCCC-cccccH--HHHHHHHHHHHHhChhhHHHHHHHhhh----cc---HHHHHH
Confidence 35677889999999999999999875421 222222 222323333322 2222222222210 00 122333
Q ss_pred HHHcCCChHHHHHHHhcCCC-------------------------CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCC
Q 037414 101 IYALHKALTDAHALFNGMKE-------------------------RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQ 155 (577)
Q Consensus 101 ~~~~~g~~~~A~~~f~~m~~-------------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 155 (577)
.+...|.+++|..+|++... .+..+|..+..++...|++++|++.|.+.
T Consensus 1058 Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA------ 1131 (1630)
T 1xi4_A 1058 IAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA------ 1131 (1630)
T ss_pred HHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc------
Confidence 33334444444444443321 24556777778888888888888877442
Q ss_pred CCcchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCC
Q 037414 156 LDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANK 235 (577)
Q Consensus 156 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g 235 (577)
-|...|..++.+|.+.|+++++.+.+....+.. ++..+.+.++.+|++.+++++.....+ .
T Consensus 1132 dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI~---~-------------- 1192 (1630)
T 1xi4_A 1132 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFIN---G-------------- 1192 (1630)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHHh---C--------------
Confidence 356667777778888888888888887766653 333344457777888877775443321 1
Q ss_pred CCcchhhHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 037414 236 FLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYA 315 (577)
Q Consensus 236 ~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 315 (577)
++...+..+.+.|...|++++|..+|... ..|..+...|.+.|++++|.+.+++.. +..+|..+-.+
T Consensus 1193 --~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWkev~~a 1259 (1630)
T 1xi4_A 1193 --PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFA 1259 (1630)
T ss_pred --CCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHHHHHHH
Confidence 13334556888888899999999999885 478889999999999999999988762 55788888888
Q ss_pred HhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhc--CCHH
Q 037414 316 CSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIH--KNVD 391 (577)
Q Consensus 316 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~--g~~~ 391 (577)
|...|++..|...... +..+...+..++..|.+.|.+++|..+++.. +.+| ....|.-|...+.+. ++..
T Consensus 1260 cve~~Ef~LA~~cgl~------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklm 1333 (1630)
T 1xi4_A 1260 CVDGKEFRLAQMCGLH------IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMR 1333 (1630)
T ss_pred HhhhhHHHHHHHHHHh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHH
Confidence 8888888888876553 3345667788999999999999999999776 5555 334676666666654 4556
Q ss_pred HHHHHHHHHHhcCC-----CCchhHHHHHHHHhccCChhHHHHH
Q 037414 392 LAEMAAKSLLERQP-----QNPGHYVLLSNVYANAGRWQDVAKI 430 (577)
Q Consensus 392 ~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~~ 430 (577)
++.+.|..-....| .+...|.-++..|.+.|+|+.|...
T Consensus 1334 Ehlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1334 EHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred HHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 66666665444434 4667899999999999999999854
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.6e-13 Score=127.97 Aligned_cols=221 Identities=12% Similarity=0.048 Sum_probs=187.3
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC--C-
Q 037414 193 QFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ--K- 269 (577)
Q Consensus 193 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~--~- 269 (577)
...+..+...|...|++++|...|++..+.+ .+..++..+..+|...|++++|...|++..+ |
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~ 70 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--------------KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGRE 70 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------------CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--------------ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcc
Confidence 4567888889999999999999998875432 3667888899999999999999999998764 2
Q ss_pred ---C----hhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCH
Q 037414 270 ---N----VISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDV 342 (577)
Q Consensus 270 ---~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~ 342 (577)
+ ...|..+...|...|++++|...|++.... .|+. ..+...|++++|...++.+.+. .+.+.
T Consensus 71 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~--~~~~~ 139 (258)
T 3uq3_A 71 MRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYV--NPEKA 139 (258)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHC--CHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHc--CcchH
Confidence 1 578889999999999999999999999874 4553 3455678899999999998742 22346
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhc
Q 037414 343 KHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYAN 420 (577)
Q Consensus 343 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 420 (577)
..+..+...|...|++++|.+.+++. ...| +..+|..+...+...|++++|...++++++..|+++..|..+..+|..
T Consensus 140 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~ 219 (258)
T 3uq3_A 140 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 219 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 77888899999999999999999987 3334 577899999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHhhCC
Q 037414 421 AGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 421 ~g~~~~A~~~~~~m~~~g 438 (577)
.|++++|.+.+++..+..
T Consensus 220 ~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 220 VKEYASALETLDAARTKD 237 (258)
T ss_dssp TTCHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHhC
Confidence 999999999999887643
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.8e-13 Score=126.88 Aligned_cols=239 Identities=8% Similarity=-0.081 Sum_probs=179.8
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcc
Q 037414 160 TLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLD 239 (577)
Q Consensus 160 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~ 239 (577)
.+..+...+...|++++|...+.++++.. .+..++..+..+|...|++++|.+.|++..+.++..- ...+..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~------~~~~~~ 78 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMR------ADYKVI 78 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT------CCHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccc------cchHHH
Confidence 44555555666666666666666666665 5566667777777777777777777766543211000 000001
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhccC--CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHh
Q 037414 240 VILGTAVIDMYAKCGSIDSAREIFDRMRQ--KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACS 317 (577)
Q Consensus 240 ~~~~~~Li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 317 (577)
..++..+...|.+.|++++|...|++..+ |+ ...+...|++++|...++++.... +.+...+..+...+.
T Consensus 79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 150 (258)
T 3uq3_A 79 SKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-------ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYF 150 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch-------hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHH
Confidence 56788899999999999999999999875 44 345677889999999999998752 334567788888999
Q ss_pred ccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHH
Q 037414 318 HTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEM 395 (577)
Q Consensus 318 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~ 395 (577)
..|++++|...++.+++. .+.+...+..+...|.+.|++++|.+.+++. ...| +...|..+...+...|++++|..
T Consensus 151 ~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 228 (258)
T 3uq3_A 151 TKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALE 228 (258)
T ss_dssp HTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 999999999999999864 2345788999999999999999999999987 3344 56789999999999999999999
Q ss_pred HHHHHHhcC------CCCchhHHHHHH
Q 037414 396 AAKSLLERQ------PQNPGHYVLLSN 416 (577)
Q Consensus 396 ~~~~~~~~~------p~~~~~~~~l~~ 416 (577)
.++++++.. |.+...+..+..
T Consensus 229 ~~~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 229 TLDAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHhChhhcCCCchHHHHHHHHH
Confidence 999999988 777666655543
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.2e-12 Score=124.73 Aligned_cols=244 Identities=9% Similarity=-0.061 Sum_probs=147.3
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhh
Q 037414 163 FVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVIL 242 (577)
Q Consensus 163 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~ 242 (577)
.....+...|++++|...++++++.. +.+..++..+...|...|++++|...|++..+... ........
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~----------~~~~~~~~ 76 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVN----------ATKAKSAD 76 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSC----------TTTCCHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccC----------chhHHHHH
Confidence 33444455555555555555555543 22333555555555666666666665555443100 00001223
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcc
Q 037414 243 GTAVIDMYAKCGSIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHT 319 (577)
Q Consensus 243 ~~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 319 (577)
+..+...|...|++++|...|++..+ .+...|..+...|...|++++|+..|++..+. .+.+...+..+...+...
T Consensus 77 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~ 155 (272)
T 3u4t_A 77 FEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-TTTDPKVFYELGQAYYYN 155 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-SCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-CCCcHHHHHHHHHHHHHH
Confidence 55666666666777777766666543 34566777777777777777777777777765 223344555555233344
Q ss_pred CCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHhC----CCCCC------HhHHHHHHHHHHh
Q 037414 320 GLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGR---LDEALKLIESM----SVEKD------EGLWGALLGACRI 386 (577)
Q Consensus 320 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m----~~~p~------~~~~~~ll~~~~~ 386 (577)
+++++|.+.|+.+++. .+.+...+..+...+...|+ +++|...+++. ...|+ ..+|..+...+..
T Consensus 156 ~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 233 (272)
T 3u4t_A 156 KEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTI 233 (272)
T ss_dssp TCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH
Confidence 5888888888877653 12235666666777777776 66666666655 11233 2467778888999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhc
Q 037414 387 HKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYAN 420 (577)
Q Consensus 387 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 420 (577)
.|++++|...++++++.+|+++.+...+......
T Consensus 234 ~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~ 267 (272)
T 3u4t_A 234 NRDKVKADAAWKNILALDPTNKKAIDGLKMKLEH 267 (272)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHC-----
T ss_pred cCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcc
Confidence 9999999999999999999998777666555443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=2.4e-13 Score=129.78 Aligned_cols=240 Identities=13% Similarity=-0.034 Sum_probs=157.8
Q ss_pred CCChHHHHHHHHHHHHcCC---CCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHH
Q 037414 171 RKDIVMGRLIHDIVLKSGL---DIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVI 247 (577)
Q Consensus 171 ~~~~~~a~~~~~~~~~~g~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li 247 (577)
.+++++|...++++++... +.+..++..+...|...|++++|...|++..+.+ +.+..++..+.
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-------------~~~~~~~~~la 84 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-------------PDMPEVFNYLG 84 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------CCCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-------------CCcHHHHHHHH
Confidence 3555666666666555421 1134555666666666666666666666554321 12345566666
Q ss_pred HHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHH
Q 037414 248 DMYAKCGSIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEE 324 (577)
Q Consensus 248 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 324 (577)
..|...|++++|...|++..+ .+...|..+...|...|++++|...|+++.+. .|+.......+..+...|++++
T Consensus 85 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~ 162 (275)
T 1xnf_A 85 IYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQ 162 (275)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHH
Confidence 677777777777777766653 35667777888888888888888888888764 3444444444445566688888
Q ss_pred HHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-----HhHHHHHHHHHHhcCCHHHHHHHHH
Q 037414 325 GLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEKD-----EGLWGALLGACRIHKNVDLAEMAAK 398 (577)
Q Consensus 325 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~ 398 (577)
|...+...... .+++...+ .++..+...++.++|.+.+++. ...|+ ..+|..+...+...|++++|...++
T Consensus 163 A~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 239 (275)
T 1xnf_A 163 AKEVLKQHFEK--SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFK 239 (275)
T ss_dssp HHHHHHHHHHH--SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhc--CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 88888777654 23333333 3666677778888888888776 32332 4678888899999999999999999
Q ss_pred HHHhcCCCCchhHHHHHHHHhccCChhHHHHHH
Q 037414 399 SLLERQPQNPGHYVLLSNVYANAGRWQDVAKIR 431 (577)
Q Consensus 399 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 431 (577)
++++.+|++...+ ..++...|++++|.+.+
T Consensus 240 ~al~~~p~~~~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 240 LAVANNVHNFVEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHTTCCTTCHHH---HHHHHHHHHHHHC----
T ss_pred HHHhCCchhHHHH---HHHHHHHHHHHhhHHHH
Confidence 9999998775544 55677788888887665
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.6e-12 Score=118.37 Aligned_cols=199 Identities=13% Similarity=0.053 Sum_probs=173.4
Q ss_pred cchhhHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 037414 238 LDVILGTAVIDMYAKCGSIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLY 314 (577)
Q Consensus 238 ~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 314 (577)
.+..++..+...|...|++++|...|+++.+ .+...|..+...|...|++++|.+.|+++.... +.+..++..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 3567888999999999999999999998764 457789999999999999999999999998763 346778888999
Q ss_pred HHhcc-CCHHHHHHHHHHhhHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCH
Q 037414 315 ACSHT-GLVEEGLRLFSSMWDDFAVRPD-VKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNV 390 (577)
Q Consensus 315 a~~~~-g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~ 390 (577)
.+... |++++|...++.+.+ .+..|+ ...+..+...|...|++++|.+.++++ ...| +...|..+...+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCH
Confidence 99999 999999999999976 233443 678888999999999999999999887 3334 577899999999999999
Q ss_pred HHHHHHHHHHHhcCC-CCchhHHHHHHHHhccCChhHHHHHHHHHhhCC
Q 037414 391 DLAEMAAKSLLERQP-QNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 391 ~~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
++|...++++++..| .++..+..+...+...|+.++|..+++.+.+..
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 999999999999999 999999999999999999999999999987543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.49 E-value=3e-12 Score=120.55 Aligned_cols=203 Identities=11% Similarity=-0.019 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC---C
Q 037414 193 QFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ---K 269 (577)
Q Consensus 193 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~---~ 269 (577)
...+..+...|...|++++|.+.|+++.+.+ +.+..++..+...|.+.|++++|...|+++.+ .
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 103 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-------------PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR 103 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-------------CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 4556666667777777777777776654321 12345566666777777777777777766543 3
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHH
Q 037414 270 NVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLP-NRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCM 348 (577)
Q Consensus 270 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 348 (577)
+...|..+...|...|++++|.++|+++...+..| +...+..+...+...|++++|.+.++.+.+. .+.+...+..+
T Consensus 104 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l 181 (252)
T 2ho1_A 104 NARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--NRNQPSVALEM 181 (252)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcccHHHHHHH
Confidence 45566666677777777777777777766533334 3345556666666677777777777766543 12235566666
Q ss_pred HHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchh
Q 037414 349 VDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGH 410 (577)
Q Consensus 349 i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 410 (577)
...|.+.|++++|.+.++++ ...| +...+..+...+...|+.++|.+.++++.+..|+++..
T Consensus 182 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 245 (252)
T 2ho1_A 182 ADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEY 245 (252)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHH
Confidence 66666677777777666665 2233 34456666666666677777777777766666666543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.49 E-value=2.3e-12 Score=121.31 Aligned_cols=197 Identities=10% Similarity=-0.030 Sum_probs=173.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 037414 240 VILGTAVIDMYAKCGSIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYAC 316 (577)
Q Consensus 240 ~~~~~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 316 (577)
...+..+...|...|++++|...|+++.+ .+...|..+...|...|++++|.+.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 56788899999999999999999998864 467789999999999999999999999998763 34677888899999
Q ss_pred hccCCHHHHHHHHHHhhHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHH
Q 037414 317 SHTGLVEEGLRLFSSMWDDFAVRP-DVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLA 393 (577)
Q Consensus 317 ~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a 393 (577)
...|++++|.++++.+.+ .+..| +...+..+...|.+.|++++|.+.+++. ...| +...|..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999975 23445 4677888899999999999999999987 3334 577899999999999999999
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCC
Q 037414 394 EMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 394 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
...++++.+..|.++..+..+..+|...|++++|.+.++++.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999997654
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.48 E-value=4.8e-12 Score=116.53 Aligned_cols=209 Identities=11% Similarity=-0.003 Sum_probs=160.3
Q ss_pred CcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC--
Q 037414 191 IDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ-- 268 (577)
Q Consensus 191 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~-- 268 (577)
.+..++..+...|...|++++|.+.|+++.+.+ +.+..++..+...|...|++++|...|++..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 72 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-------------PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK 72 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-------------ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Confidence 345667777777777888888887777654321 12355667777788888888888888877653
Q ss_pred -CChhhHHHHHHHHHHc-CChHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHH
Q 037414 269 -KNVISWSAMIAAYGYH-GQGKKALDLFPMMLSSRVLPN-RITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHY 345 (577)
Q Consensus 269 -~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~ 345 (577)
.+...|..+...|... |++++|...++++.+.+..|+ ...+..+...+...|++++|...++.+.+. .+.+...+
T Consensus 73 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~ 150 (225)
T 2vq2_A 73 PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAF 150 (225)
T ss_dssp TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHH
T ss_pred CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHH
Confidence 4566788888888899 999999999999887433444 567778888899999999999999988754 23347788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC-CCC--CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 037414 346 TCMVDLLGRAGRLDEALKLIESM-SVE--KDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLL 414 (577)
Q Consensus 346 ~~li~~~~~~g~~~~A~~~~~~m-~~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 414 (577)
..+...|.+.|++++|.+.+++. ... .+...+..+...+...|+.+.+..+++.+.+..|+++.....+
T Consensus 151 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 151 KELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 88999999999999999999887 223 3566777777888999999999999999999999987665443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-11 Score=118.29 Aligned_cols=223 Identities=14% Similarity=0.010 Sum_probs=152.9
Q ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHh----cCCHHHHHHHHHhcc
Q 037414 192 DQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAK----CGSIDSAREIFDRMR 267 (577)
Q Consensus 192 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~----~g~~~~A~~~~~~~~ 267 (577)
+..++..+...|...|++++|...|++..+++ +...+..|...|.. .|++++|...|++..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~ 69 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---------------ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKAC 69 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---------------CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHH
Confidence 34455556666666666666666666554322 23345556666666 677777777776654
Q ss_pred C-CChhhHHHHHHHHHH----cCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHhhHhcCC
Q 037414 268 Q-KNVISWSAMIAAYGY----HGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSH----TGLVEEGLRLFSSMWDDFAV 338 (577)
Q Consensus 268 ~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~ 338 (577)
+ .+...+..+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...|+...+. +
T Consensus 70 ~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~- 144 (273)
T 1ouv_A 70 DLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N- 144 (273)
T ss_dssp HTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T-
T ss_pred HCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C-
Confidence 3 355666677777777 777777777777777664 55666667777777 77788888777777643 2
Q ss_pred CCCHHHHHHHHHHHHH----cCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCchh
Q 037414 339 RPDVKHYTCMVDLLGR----AGRLDEALKLIESMSVEKDEGLWGALLGACRI----HKNVDLAEMAAKSLLERQPQNPGH 410 (577)
Q Consensus 339 ~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~ 410 (577)
+...+..+...|.. .+++++|.+.|++.-...+...+..+...+.. .+++++|...++++.+.+| +..
T Consensus 145 --~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a 220 (273)
T 1ouv_A 145 --DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGG 220 (273)
T ss_dssp --CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHH
T ss_pred --cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHH
Confidence 45566666677776 77888888877776212355667777777777 7888888888888887766 567
Q ss_pred HHHHHHHHhc----cCChhHHHHHHHHHhhCC
Q 037414 411 YVLLSNVYAN----AGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 411 ~~~l~~~~~~----~g~~~~A~~~~~~m~~~g 438 (577)
+..+..+|.. .+++++|.+.+++..+.|
T Consensus 221 ~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 221 CFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 7778888887 888888888888777655
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=9.1e-13 Score=123.18 Aligned_cols=205 Identities=14% Similarity=0.079 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC---CC
Q 037414 194 FVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ---KN 270 (577)
Q Consensus 194 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~---~~ 270 (577)
..+..+...+...|++++|...|+++.+.++ .+..++..+...|.+.|++++|...|+++.+ .+
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 90 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEENK-------------EDAIPYINFANLLSSVNELERALAFYDKALELDSSA 90 (243)
T ss_dssp ------------------CCTTHHHHHTTCT-------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc-------------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3444444555555555555555555433211 1233444455555555555555555555432 23
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHH
Q 037414 271 VISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVD 350 (577)
Q Consensus 271 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 350 (577)
...|..+...|...|++++|.+.|+++.+.. +.+...+..+...+...|++++|...++.+.+. .+.+...+..+..
T Consensus 91 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~ 167 (243)
T 2q7f_A 91 ATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGM 167 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHH
Confidence 4455555555556666666666666555432 223444555555555666666666666655432 1223445555555
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 037414 351 LLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLL 414 (577)
Q Consensus 351 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 414 (577)
.|.+.|++++|.+.+++. ...| +..+|..+...+...|++++|...++++++..|+++..+..+
T Consensus 168 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 233 (243)
T 2q7f_A 168 CLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAK 233 (243)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHH
Confidence 566666666666655554 1122 344555555556666666666666666666666655544443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=2e-12 Score=120.88 Aligned_cols=198 Identities=11% Similarity=0.104 Sum_probs=156.3
Q ss_pred cchhhHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 037414 238 LDVILGTAVIDMYAKCGSIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLY 314 (577)
Q Consensus 238 ~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 314 (577)
.....+..+...+...|++++|...|+++.+ .+...|..+...|...|++++|++.|+++.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 3566778889999999999999999999865 456788889999999999999999999998763 346778888999
Q ss_pred HHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHH
Q 037414 315 ACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDL 392 (577)
Q Consensus 315 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~ 392 (577)
.+...|++++|.+.++.+.+. .+.+...+..+...|.+.|++++|.+.++++ ...| +...|..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999764 2346778889999999999999999999987 3333 67788999999999999999
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCC
Q 037414 393 AEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 393 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
|...++++.+..|.++..+..++.+|...|++++|.+.+++..+..
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 9999999999999999999999999999999999999999987644
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.8e-12 Score=119.33 Aligned_cols=194 Identities=12% Similarity=0.015 Sum_probs=120.2
Q ss_pred CcchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCC
Q 037414 157 DSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKF 236 (577)
Q Consensus 157 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~ 236 (577)
+...+..+...+.+.|++++|...+++.++.. |.+...+..+..+|.+.|++++|...|++..+.++
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P------------ 70 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTP------------ 70 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------------
Confidence 44445555555555566666666665555543 33455555566666666666666666655443211
Q ss_pred CcchhhHHHHHHHHHhc-----------CCHHHHHHHHHhccC--C-ChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCC
Q 037414 237 LLDVILGTAVIDMYAKC-----------GSIDSAREIFDRMRQ--K-NVISWSAMIAAYGYHGQGKKALDLFPMMLSSRV 302 (577)
Q Consensus 237 ~~~~~~~~~Li~~~~~~-----------g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 302 (577)
.+...+..+..+|.+. |++++|...|++..+ | +...|..+...|...|++++|+..|++..+..
T Consensus 71 -~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~- 148 (217)
T 2pl2_A 71 -RYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE- 148 (217)
T ss_dssp -TCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred -CcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-
Confidence 1334455555556555 888888888888764 3 45678888888888888888888888888776
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 037414 303 LPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM 368 (577)
Q Consensus 303 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 368 (577)
.+...+..+..++...|++++|...|+..++. -+.+...+..+...+.+.|++++|.+.+++.
T Consensus 149 -~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 149 -DTPEIRSALAELYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp -CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC--------------
T ss_pred -cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 67777778888888888888888888888753 2234667777788888888888888887765
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.45 E-value=9.8e-12 Score=118.37 Aligned_cols=123 Identities=5% Similarity=0.001 Sum_probs=58.4
Q ss_pred HHHHHHcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCc--chHHHHHHHHhcCC
Q 037414 98 LLYIYALHKALTDAHALFNGMKE---RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDS--YTLPFVIRACRDRK 172 (577)
Q Consensus 98 li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~ 172 (577)
....+...|++++|...|++..+ .+...|..+...|...|++++|++.|++..+.+..|+. ..|..+...+...|
T Consensus 9 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~ 88 (272)
T 3u4t_A 9 YADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKG 88 (272)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcc
Confidence 34444555555555555554422 13334555555555555555555555555542211111 11444444455555
Q ss_pred ChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCC
Q 037414 173 DIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPT 221 (577)
Q Consensus 173 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 221 (577)
++++|...++..++.. +.+..++..+...|...|++++|.+.|++..+
T Consensus 89 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 136 (272)
T 3u4t_A 89 QDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR 136 (272)
T ss_dssp CHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC
T ss_pred cHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 5555555555555443 23344455555555555555555555554443
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=3e-12 Score=129.45 Aligned_cols=269 Identities=13% Similarity=0.033 Sum_probs=191.9
Q ss_pred chHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCc----HHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcC
Q 037414 159 YTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDID----QFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGAN 234 (577)
Q Consensus 159 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~ 234 (577)
..+......+...|++++|...++++++.+ +.+ ..++..+...|...|++++|...|++..+.... .
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~--------~ 80 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLART--------I 80 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--------T
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh--------c
Confidence 334444555666777777777777776653 222 346677777788888888888777765321000 0
Q ss_pred CC-CcchhhHHHHHHHHHhcCCHHHHHHHHHhccC-----CC----hhhHHHHHHHHHHcCC------------------
Q 037414 235 KF-LLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ-----KN----VISWSAMIAAYGYHGQ------------------ 286 (577)
Q Consensus 235 g~-~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~------------------ 286 (577)
+. +....++..+...|...|++++|...|++..+ ++ ..++..+...|...|+
T Consensus 81 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~ 160 (406)
T 3sf4_A 81 GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVR 160 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHH
T ss_pred cccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHH
Confidence 00 11355677788888999999999988887753 22 3478888888889999
Q ss_pred --hHHHHHHHHHhhhC----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC----HHHHHHHHHHHHHc
Q 037414 287 --GKKALDLFPMMLSS----RVLPN-RITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD----VKHYTCMVDLLGRA 355 (577)
Q Consensus 287 --~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~ 355 (577)
+++|...+++.... +..|. ..++..+...+...|++++|...++..++...-.++ ...+..+...|...
T Consensus 161 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 240 (406)
T 3sf4_A 161 DALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFL 240 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHc
Confidence 89998888876542 21222 346777888889999999999999888653222222 34778888899999
Q ss_pred CCHHHHHHHHHhC----CCCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------chhHHHHHHHHhcc
Q 037414 356 GRLDEALKLIESM----SVEKD----EGLWGALLGACRIHKNVDLAEMAAKSLLERQPQN------PGHYVLLSNVYANA 421 (577)
Q Consensus 356 g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~ 421 (577)
|++++|.+.+++. +..++ ..++..+...+...|++++|...++++++..+.. ..++..+..+|...
T Consensus 241 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~ 320 (406)
T 3sf4_A 241 GEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTAL 320 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHc
Confidence 9999999998876 11122 4477888888999999999999999998764332 45788899999999
Q ss_pred CChhHHHHHHHHHhh
Q 037414 422 GRWQDVAKIRDLMTR 436 (577)
Q Consensus 422 g~~~~A~~~~~~m~~ 436 (577)
|++++|.+.+++..+
T Consensus 321 g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 321 GNHDQAMHFAEKHLE 335 (406)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999988764
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=6.3e-12 Score=130.26 Aligned_cols=324 Identities=10% Similarity=-0.046 Sum_probs=161.3
Q ss_pred cChHHHHHHHHHHHHc--------CCCCCHHHHHHHHHHHHcCCChHHHHHHHhcCCC-------C----CcchHHHHHH
Q 037414 71 RNIFQIRQVHAQIVAG--------GTLTNLIVANKLLYIYALHKALTDAHALFNGMKE-------R----DSVSWSVMVG 131 (577)
Q Consensus 71 ~~~~~a~~~~~~~~~~--------g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-------~----~~~~~~~li~ 131 (577)
++.++|.+.+...++. ..+....+|+.+...|...|++++|...|++..+ + ...+++.+..
T Consensus 65 G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~ 144 (472)
T 4g1t_A 65 GQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGW 144 (472)
T ss_dssp TCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHH
Confidence 4466666666554432 1122345667777777777777777766655421 1 2234444444
Q ss_pred HHHh--CCChhHHHHHHHHHHHCCCCCCc-chHHHHHHH---HhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Q 037414 132 GFSK--VADFINCFETFREFIRCGMQLDS-YTLPFVIRA---CRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAK 205 (577)
Q Consensus 132 ~~~~--~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~---~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 205 (577)
++.. .+++++|++.|++..+. .|+. ..+..+..+ +...++.++|.+.+++.++.. +.+..++..+...+..
T Consensus 145 ~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~ 221 (472)
T 4g1t_A 145 TRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHK 221 (472)
T ss_dssp HHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHH
T ss_pred HHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHH
Confidence 4443 34567777777777663 3433 233333222 334455666666666666654 3344555544444433
Q ss_pred ----CCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC--C-ChhhHHHHH
Q 037414 206 ----CKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ--K-NVISWSAMI 278 (577)
Q Consensus 206 ----~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li 278 (577)
.|++++|.+.+++....+ +.+..++..+...|.+.|++++|...|++..+ | +...|..+.
T Consensus 222 ~~~~~~~~~~a~~~~~~al~~~-------------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 288 (472)
T 4g1t_A 222 MREEGEEEGEGEKLVEEALEKA-------------PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIG 288 (472)
T ss_dssp CC------CHHHHHHHHHHHHC-------------SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHhC-------------ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 345566666666543221 12345566667777777777777777776643 2 334454444
Q ss_pred HHHHHc-------------------CChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCC
Q 037414 279 AAYGYH-------------------GQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVR 339 (577)
Q Consensus 279 ~~~~~~-------------------g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 339 (577)
..|... +..++|...|++..+.. +.+..++..+...+...|++++|...|++.++. .
T Consensus 289 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~---~ 364 (472)
T 4g1t_A 289 CCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK---E 364 (472)
T ss_dssp HHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS---C
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc---C
Confidence 444221 22445566666555432 222334555666666777777777777666532 2
Q ss_pred CCHH----HHHHHHH-HHHHcCCHHHHHHHHHhC-C------------------------CCC-CHhHHHHHHHHHHhcC
Q 037414 340 PDVK----HYTCMVD-LLGRAGRLDEALKLIESM-S------------------------VEK-DEGLWGALLGACRIHK 388 (577)
Q Consensus 340 p~~~----~~~~li~-~~~~~g~~~~A~~~~~~m-~------------------------~~p-~~~~~~~ll~~~~~~g 388 (577)
|+.. .+..+.. .+...|+.++|+..|++. . ..| +..+|..+...+...|
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g 444 (472)
T 4g1t_A 365 LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNE 444 (472)
T ss_dssp CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 2221 1122221 123456666666665543 1 123 4568999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCchhHHHH
Q 037414 389 NVDLAEMAAKSLLERQPQNPGHYVLL 414 (577)
Q Consensus 389 ~~~~a~~~~~~~~~~~p~~~~~~~~l 414 (577)
++++|++.++++++.+|.+|.++..+
T Consensus 445 ~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 445 KMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HCC-----------------------
T ss_pred CHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 99999999999999998887665443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=2e-12 Score=123.27 Aligned_cols=242 Identities=10% Similarity=-0.122 Sum_probs=153.8
Q ss_pred hCCChhHHHHHHHHHHHCCCC--C-CcchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHH
Q 037414 135 KVADFINCFETFREFIRCGMQ--L-DSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDD 211 (577)
Q Consensus 135 ~~g~~~~A~~~~~~m~~~g~~--p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 211 (577)
..|++++|++.|+++.+.... | +..++..+...+...|++++|...++++++.. +.+..++..+..+|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 346677777777777764211 1 34456666666777777777777777777664 4456777777777777777777
Q ss_pred HHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC--CChhhHHHHHHHHHHcCChHH
Q 037414 212 ARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ--KNVISWSAMIAAYGYHGQGKK 289 (577)
Q Consensus 212 A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~ 289 (577)
|.+.|++..+.+ +.+..++..+..+|.+.|++++|...|+++.+ |+...+...+..+...|++++
T Consensus 96 A~~~~~~al~~~-------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (275)
T 1xnf_A 96 AYEAFDSVLELD-------------PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQ 162 (275)
T ss_dssp HHHHHHHHHHHC-------------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHhcC-------------ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHH
Confidence 777777665321 12455667777777778888888877777653 444444444445566678888
Q ss_pred HHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC-----HHHHHHHHHHHHHcCCHHHHHHH
Q 037414 290 ALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD-----VKHYTCMVDLLGRAGRLDEALKL 364 (577)
Q Consensus 290 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~ 364 (577)
|...+++..... +++...+ .++..+...++.++|...+....+ ..|+ ...+..+...|.+.|++++|.+.
T Consensus 163 A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 237 (275)
T 1xnf_A 163 AKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADAT---DNTSLAEHLSETNFYLGKYYLSLGDLDSATAL 237 (275)
T ss_dssp HHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCC---SHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhc---ccccccccccHHHHHHHHHHHHcCCHHHHHHH
Confidence 888887766542 3333333 355666677777778777777652 2232 46677777888888888888888
Q ss_pred HHhC-CCCCCHhHHHHHHHHHHhcCCHHHHHHHH
Q 037414 365 IESM-SVEKDEGLWGALLGACRIHKNVDLAEMAA 397 (577)
Q Consensus 365 ~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 397 (577)
|++. ...|+. +.....++...|++++|+..+
T Consensus 238 ~~~al~~~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 238 FKLAVANNVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHTTCCTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHhCCchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 8877 445533 222344556666777766554
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=9.1e-13 Score=133.34 Aligned_cols=295 Identities=13% Similarity=0.004 Sum_probs=215.1
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCc-----chHHHHHHHHhcCCChHHHHHHHHHHHHc----CCCC-
Q 037414 122 DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDS-----YTLPFVIRACRDRKDIVMGRLIHDIVLKS----GLDI- 191 (577)
Q Consensus 122 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~~~- 191 (577)
....+......+...|++++|+..|++..+. .|+. ..+..+...+...|++++|...++++++. +..|
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 3445566677788888888888888888875 3332 45667777788888888888888876543 2112
Q ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCC----------------
Q 037414 192 DQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGS---------------- 255 (577)
Q Consensus 192 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~---------------- 255 (577)
...++..+...|...|++++|...|++..+..... ........++..+...|...|+
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~ 158 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL-------NDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEE 158 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-------TCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc-------ccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhh
Confidence 25677888889999999999999888765311110 0001124578889999999999
Q ss_pred ----HHHHHHHHHhccC-----CC----hhhHHHHHHHHHHcCChHHHHHHHHHhhhCCC-CCC----HHHHHHHHHHHh
Q 037414 256 ----IDSAREIFDRMRQ-----KN----VISWSAMIAAYGYHGQGKKALDLFPMMLSSRV-LPN----RITFVSLLYACS 317 (577)
Q Consensus 256 ----~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~ 317 (577)
+++|...+++..+ .+ ...|..+...|...|++++|...+++..+... .++ ..++..+...+.
T Consensus 159 a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 238 (406)
T 3sf4_A 159 VRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYI 238 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 9999998887643 22 34688889999999999999999998875311 112 236778888999
Q ss_pred ccCCHHHHHHHHHHhhHhcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC----HhHHHHHHHHHH
Q 037414 318 HTGLVEEGLRLFSSMWDDFAVRPD----VKHYTCMVDLLGRAGRLDEALKLIESM----SVEKD----EGLWGALLGACR 385 (577)
Q Consensus 318 ~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~ 385 (577)
..|++++|...++..++...-.++ ..++..+...|...|++++|.+.+++. +..++ ..++..+...+.
T Consensus 239 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 318 (406)
T 3sf4_A 239 FLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYT 318 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 999999999999988653211112 567788889999999999999999876 11122 447888888999
Q ss_pred hcCCHHHHHHHHHHHHhcCC------CCchhHHHHHHHHhccCChh
Q 037414 386 IHKNVDLAEMAAKSLLERQP------QNPGHYVLLSNVYANAGRWQ 425 (577)
Q Consensus 386 ~~g~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~ 425 (577)
..|++++|...++++++..+ ....++..+..+|...|+..
T Consensus 319 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 319 ALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 99999999999999987632 23456777888887777654
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.43 E-value=3.8e-12 Score=124.73 Aligned_cols=265 Identities=14% Similarity=0.036 Sum_probs=187.4
Q ss_pred HHHHhcCCChHHHHHHHHHHHHcCCCCc----HHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcch
Q 037414 165 IRACRDRKDIVMGRLIHDIVLKSGLDID----QFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDV 240 (577)
Q Consensus 165 l~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~ 240 (577)
...+...|++++|...++++++.. +.+ ..++..+...|...|++++|.+.|++..+..... ...+...
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~~~ 83 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI-------GDQLGEA 83 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-------TCHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc-------cccHHHH
Confidence 344556666777776666666653 222 3556667777777777777777776653210000 0001135
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhccC-----CC----hhhHHHHHHHHHHcCC--------------------hHHHH
Q 037414 241 ILGTAVIDMYAKCGSIDSAREIFDRMRQ-----KN----VISWSAMIAAYGYHGQ--------------------GKKAL 291 (577)
Q Consensus 241 ~~~~~Li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~ 291 (577)
.++..+...|...|++++|...|++..+ ++ ..++..+...|...|+ +++|.
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 5677888888999999999988887653 22 3367788888888998 88998
Q ss_pred HHHHHhhhC----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC----HHHHHHHHHHHHHcCCHHHHH
Q 037414 292 DLFPMMLSS----RVLPN-RITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD----VKHYTCMVDLLGRAGRLDEAL 362 (577)
Q Consensus 292 ~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~ 362 (577)
..+++.... +..|. ..++..+...+...|++++|...++...+...-.++ ...+..+...|...|++++|.
T Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 243 (338)
T 3ro2_A 164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 243 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 888876542 21222 346777788889999999999999888643211122 347778888999999999999
Q ss_pred HHHHhC----CCCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------chhHHHHHHHHhccCChhHHH
Q 037414 363 KLIESM----SVEKD----EGLWGALLGACRIHKNVDLAEMAAKSLLERQPQN------PGHYVLLSNVYANAGRWQDVA 428 (577)
Q Consensus 363 ~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~ 428 (577)
+.+++. +..++ ..++..+...+...|++++|...++++++..+.. ..++..+..+|...|++++|.
T Consensus 244 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 323 (338)
T 3ro2_A 244 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM 323 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 998876 11122 4477788888999999999999999998764332 347888999999999999999
Q ss_pred HHHHHHhhC
Q 037414 429 KIRDLMTRR 437 (577)
Q Consensus 429 ~~~~~m~~~ 437 (577)
+.+++..+.
T Consensus 324 ~~~~~a~~~ 332 (338)
T 3ro2_A 324 HFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 999988754
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.3e-12 Score=132.78 Aligned_cols=265 Identities=12% Similarity=0.012 Sum_probs=185.3
Q ss_pred HHHHhcCCChHHHHHHHHHHHHcCCCCcH----HHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcch
Q 037414 165 IRACRDRKDIVMGRLIHDIVLKSGLDIDQ----FVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDV 240 (577)
Q Consensus 165 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~ 240 (577)
...+...|++++|...++++++.+ +.+. .++..+...|...|++++|...|++..+..... ...+...
T Consensus 55 g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~~~ 126 (411)
T 4a1s_A 55 GERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM-------NDRLGEA 126 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT-------TCHHHHH
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc-------cCchHHH
Confidence 334555566666666666665553 2222 356666667777777777777766543210000 0001235
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhccC-----C----ChhhHHHHHHHHHHcCC-----------------hHHHHHHH
Q 037414 241 ILGTAVIDMYAKCGSIDSAREIFDRMRQ-----K----NVISWSAMIAAYGYHGQ-----------------GKKALDLF 294 (577)
Q Consensus 241 ~~~~~Li~~~~~~g~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~-----------------~~~A~~l~ 294 (577)
.++..+...|...|++++|...|++..+ . ....|..+...|...|+ +++|++.+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 5777888889999999999988887653 1 23467888888999999 89998888
Q ss_pred HHhhhC----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHH
Q 037414 295 PMMLSS----RVLP-NRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD----VKHYTCMVDLLGRAGRLDEALKLI 365 (577)
Q Consensus 295 ~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~ 365 (577)
++..+. +..| ...++..+...+...|++++|...+++.++...-.++ ...+..+...|...|++++|.+.+
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 876542 2122 2346777888899999999999999888653211122 237788888999999999999999
Q ss_pred HhC-CC---CCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------CchhHHHHHHHHhccCChhHHHHHH
Q 037414 366 ESM-SV---EKD----EGLWGALLGACRIHKNVDLAEMAAKSLLERQPQ------NPGHYVLLSNVYANAGRWQDVAKIR 431 (577)
Q Consensus 366 ~~m-~~---~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~ 431 (577)
++. .. ..+ ..++..+...+...|++++|...++++++..+. ...++..+..+|...|++++|.+.+
T Consensus 287 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 366 (411)
T 4a1s_A 287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYA 366 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 876 11 111 457788888899999999999999999876433 2357889999999999999999999
Q ss_pred HHHhhC
Q 037414 432 DLMTRR 437 (577)
Q Consensus 432 ~~m~~~ 437 (577)
++..+.
T Consensus 367 ~~al~~ 372 (411)
T 4a1s_A 367 EQHLQL 372 (411)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988653
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=3.3e-11 Score=115.04 Aligned_cols=224 Identities=13% Similarity=0.026 Sum_probs=142.2
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh----CCCHHHHHHHHhhCCCCChhHHHHHHhcCC
Q 037414 160 TLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAK----CKVIDDARQLFDQMPTRDLVTWTVMIGANK 235 (577)
Q Consensus 160 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g 235 (577)
++..+...+...+++++|...+++..+. .+...+..+..+|.. .|++++|...|++..+.+
T Consensus 8 a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~------------ 72 (273)
T 1ouv_A 8 ELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN------------ 72 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------------
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC------------
Confidence 3333444444445555555555544442 223344445555555 555555555555443221
Q ss_pred CCcchhhHHHHHHHHHh----cCCHHHHHHHHHhccC-CChhhHHHHHHHHHH----cCChHHHHHHHHHhhhCCCCCCH
Q 037414 236 FLLDVILGTAVIDMYAK----CGSIDSAREIFDRMRQ-KNVISWSAMIAAYGY----HGQGKKALDLFPMMLSSRVLPNR 306 (577)
Q Consensus 236 ~~~~~~~~~~Li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~ 306 (577)
+...+..|..+|.. .+++++|...|++..+ .+...+..+...|.. .+++++|+..|++..+.+ +.
T Consensus 73 ---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~ 146 (273)
T 1ouv_A 73 ---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DG 146 (273)
T ss_dssp ---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred ---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cH
Confidence 23344455555555 6666666666665543 355566777777777 778888888888777765 44
Q ss_pred HHHHHHHHHHhc----cCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHhCCCCCCHhHHH
Q 037414 307 ITFVSLLYACSH----TGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGR----AGRLDEALKLIESMSVEKDEGLWG 378 (577)
Q Consensus 307 ~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~ 378 (577)
..+..+...|.. .++.++|...|+...+. .+...+..+...|.. .+++++|.+.|++.-...+...+.
T Consensus 147 ~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~ 222 (273)
T 1ouv_A 147 DGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCF 222 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHH
Confidence 556666666666 78888888888887643 245667777788888 888888888888762122366777
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHhcCCCCc
Q 037414 379 ALLGACRI----HKNVDLAEMAAKSLLERQPQNP 408 (577)
Q Consensus 379 ~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~ 408 (577)
.+...+.. .++.++|...++++.+.+|++.
T Consensus 223 ~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a 256 (273)
T 1ouv_A 223 NLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGA 256 (273)
T ss_dssp HHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHH
Confidence 77788887 8899999999999999888753
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.42 E-value=6.2e-12 Score=125.71 Aligned_cols=242 Identities=9% Similarity=0.052 Sum_probs=148.7
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCC-HHHHHHHHhhCCCCChhHHHHHHhcCCCCcc
Q 037414 161 LPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKV-IDDARQLFDQMPTRDLVTWTVMIGANKFLLD 239 (577)
Q Consensus 161 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~ 239 (577)
|..+...+...|++++|...++++++.. +.+..+|+.+..+|.+.|+ +++|...|++..+.++ .+
T Consensus 100 ~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-------------~~ 165 (382)
T 2h6f_A 100 YDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-------------KN 165 (382)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-------------TC
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-------------CC
Confidence 3333344444555555555555555443 3344555555555555554 5555555555433211 13
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 037414 240 VILGTAVIDMYAKCGSIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYAC 316 (577)
Q Consensus 240 ~~~~~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 316 (577)
..+|+.+..+|.+.|++++|...|+++.+ .+...|..+..++.+.|++++|+..|+++++.. +-+...|+.+..++
T Consensus 166 ~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l 244 (382)
T 2h6f_A 166 YQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVI 244 (382)
T ss_dssp HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 44555555556666666666666665543 355667777777777777777777777777653 22455666666666
Q ss_pred hc-cCCHHHH-----HHHHHHhhHhcCCCC-CHHHHHHHHHHHHHcC--CHHHHHHHHHhCCCCC-CHhHHHHHHHHHHh
Q 037414 317 SH-TGLVEEG-----LRLFSSMWDDFAVRP-DVKHYTCMVDLLGRAG--RLDEALKLIESMSVEK-DEGLWGALLGACRI 386 (577)
Q Consensus 317 ~~-~g~~~~a-----~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~p-~~~~~~~ll~~~~~ 386 (577)
.. .|..++| ...++..++ +.| +...|..+...|.+.| ++++|.+.++++...| +...+..+...+..
T Consensus 245 ~~l~~~~~eA~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~ 321 (382)
T 2h6f_A 245 SNTTGYNDRAVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYED 321 (382)
T ss_dssp HHTTCSCSHHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred HHhcCcchHHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Confidence 66 4544555 466776664 234 3567777777777777 5788888887774445 34577777777776
Q ss_pred cC---------CHHHHHHHHHHH-HhcCCCCchhHHHHHHHHhc
Q 037414 387 HK---------NVDLAEMAAKSL-LERQPQNPGHYVLLSNVYAN 420 (577)
Q Consensus 387 ~g---------~~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~ 420 (577)
.| ..++|+.+++++ .+.+|.....|..+...+..
T Consensus 322 ~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 322 MLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 53 258899999999 88899888888877766543
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.40 E-value=8.8e-11 Score=120.82 Aligned_cols=336 Identities=11% Similarity=0.003 Sum_probs=226.7
Q ss_pred HHhccChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCh---HHHHHHHhcCCCCCcchHHHHHHHHHhCC-----C
Q 037414 67 LLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKAL---TDAHALFNGMKERDSVSWSVMVGGFSKVA-----D 138 (577)
Q Consensus 67 l~a~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~f~~m~~~~~~~~~~li~~~~~~g-----~ 138 (577)
...-++++.|.+.+....+.|. +..+..|-.+|...|+. ++|...|++..+.++..+..|...+...+ +
T Consensus 13 ~~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~ 89 (452)
T 3e4b_A 13 ALKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAE 89 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC---CTGGGTCC----------------------------CHHHHHHHHHTC--CCHHH
T ss_pred HHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcC
Confidence 3334458999999999988873 33445566667778888 89999999888777778888887666665 7
Q ss_pred hhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCChH---HHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCC----CHHH
Q 037414 139 FINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIV---MGRLIHDIVLKSGLDIDQFVCAALVDMYAKCK----VIDD 211 (577)
Q Consensus 139 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~---~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g----~~~~ 211 (577)
+++|+..|++..+.|. ...+..|...|...+..+ .+.+.+......| +......|...|...+ ..++
T Consensus 90 ~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~ 163 (452)
T 3e4b_A 90 HHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDD 163 (452)
T ss_dssp HHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHH
T ss_pred HHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHH
Confidence 7899999999998763 335666666665544433 3455555555555 3446677788888877 4555
Q ss_pred HHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcC---CHHHHHHHHHhccC---CChhhHHHHHHHHHHc-
Q 037414 212 ARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCG---SIDSAREIFDRMRQ---KNVISWSAMIAAYGYH- 284 (577)
Q Consensus 212 A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g---~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~- 284 (577)
|..+++..... ++..+..|..+|.+.| +.++|...|++..+ ++...+..+...|...
T Consensus 164 a~~~~~~a~~~----------------~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~ 227 (452)
T 3e4b_A 164 VERICKAALNT----------------TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDAT 227 (452)
T ss_dssp HHHHHHHHTTT----------------CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGG
T ss_pred HHHHHHHHHcC----------------CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 66666665543 3336778899999999 99999999998764 3344446677777554
Q ss_pred ---CChHHHHHHHHHhhhCCCCCCHHHHHHHHHH-H--hccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcC--
Q 037414 285 ---GQGKKALDLFPMMLSSRVLPNRITFVSLLYA-C--SHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAG-- 356 (577)
Q Consensus 285 ---g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a-~--~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g-- 356 (577)
+++++|+..|++.. .| +...+..+... + ...++.++|.+.|+...+. | +...+..|...|. .|
T Consensus 228 ~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g 298 (452)
T 3e4b_A 228 LGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKW 298 (452)
T ss_dssp GSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSS
T ss_pred CCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCC
Confidence 68999999999987 33 34445555554 3 5689999999999999753 4 5667777777777 55
Q ss_pred ---CHHHHHHHHHhCCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhc----cCChh
Q 037414 357 ---RLDEALKLIESMSVEKDEGLWGALLGACRI----HKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYAN----AGRWQ 425 (577)
Q Consensus 357 ---~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~ 425 (577)
++++|.++|++.- ..+...+..|...|.. ..+.++|...+++..+.+ ++.....|..+|.. ..+.+
T Consensus 299 ~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~G~g~~~d~~ 375 (452)
T 3e4b_A 299 VPADAKAAEAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG--QNSADFAIAQLFSQGKGTKPDPL 375 (452)
T ss_dssp SCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT--CTTHHHHHHHHHHSCTTBCCCHH
T ss_pred CCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC--hHHHHHHHHHHHHhCCCCCCCHH
Confidence 9999999999988 5677788888777766 349999999999998765 45678889998875 46899
Q ss_pred HHHHHHHHHhhCCC
Q 037414 426 DVAKIRDLMTRRRL 439 (577)
Q Consensus 426 ~A~~~~~~m~~~g~ 439 (577)
+|...++.-.+.|.
T Consensus 376 ~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 376 NAYVFSQLAKAQDT 389 (452)
T ss_dssp HHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHCCC
Confidence 99999999888774
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.38 E-value=8.3e-12 Score=122.30 Aligned_cols=272 Identities=13% Similarity=0.013 Sum_probs=198.1
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-----cchHHHHHHHHhcCCChHHHHHHHHHHHHc----CCC-CcHHH
Q 037414 126 WSVMVGGFSKVADFINCFETFREFIRCGMQLD-----SYTLPFVIRACRDRKDIVMGRLIHDIVLKS----GLD-IDQFV 195 (577)
Q Consensus 126 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~~-~~~~~ 195 (577)
+......+...|++++|+..|++..+. .|+ ...+..+...+...|++++|...+.+.++. +.. ....+
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 444566778888888888888888875 343 245667777788888998888888776543 211 23567
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCC--------------------
Q 037414 196 CAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGS-------------------- 255 (577)
Q Consensus 196 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~-------------------- 255 (577)
+..+...|...|++++|...|++..+..... ........++..+...|...|+
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 158 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISREL-------NDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNA 158 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-------TCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHh-------cCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHH
Confidence 7888899999999999999988764311000 0000124477888999999999
Q ss_pred HHHHHHHHHhccC-----CC----hhhHHHHHHHHHHcCChHHHHHHHHHhhhCCC-CCC----HHHHHHHHHHHhccCC
Q 037414 256 IDSAREIFDRMRQ-----KN----VISWSAMIAAYGYHGQGKKALDLFPMMLSSRV-LPN----RITFVSLLYACSHTGL 321 (577)
Q Consensus 256 ~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~ 321 (577)
+++|...+++..+ ++ ...+..+...|...|++++|...+++..+... .++ ..++..+...+...|+
T Consensus 159 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 238 (338)
T 3ro2_A 159 LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 238 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC
Confidence 9999999887643 22 34688888999999999999999998875311 111 2367788889999999
Q ss_pred HHHHHHHHHHhhHhcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHhC-CC---CCC----HhHHHHHHHHHHhcCC
Q 037414 322 VEEGLRLFSSMWDDFAVRPD----VKHYTCMVDLLGRAGRLDEALKLIESM-SV---EKD----EGLWGALLGACRIHKN 389 (577)
Q Consensus 322 ~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~---~p~----~~~~~~ll~~~~~~g~ 389 (577)
+++|...++...+...-.++ ...+..+...|...|++++|.+.+++. .. .++ ..++..+...+...|+
T Consensus 239 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 318 (338)
T 3ro2_A 239 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN 318 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 99999999988653211122 567778889999999999999999876 11 112 3477788899999999
Q ss_pred HHHHHHHHHHHHhcCCC
Q 037414 390 VDLAEMAAKSLLERQPQ 406 (577)
Q Consensus 390 ~~~a~~~~~~~~~~~p~ 406 (577)
+++|...++++++..+.
T Consensus 319 ~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 319 HDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHHHC---
T ss_pred hHHHHHHHHHHHHHHHh
Confidence 99999999999987654
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.37 E-value=8.2e-12 Score=124.86 Aligned_cols=227 Identities=10% Similarity=0.113 Sum_probs=190.6
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCC-HHHHHHHHHhccC---
Q 037414 193 QFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGS-IDSAREIFDRMRQ--- 268 (577)
Q Consensus 193 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~-~~~A~~~~~~~~~--- 268 (577)
..++..+..++.+.|++++|.+.|++..+.++ .+..+|+.+..+|.+.|+ +++|...|++..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P-------------~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P 163 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNA-------------ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP 163 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-------------TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCc-------------cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC
Confidence 56778888899999999999999998865332 256788899999999997 9999999999874
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-CHHHHHH
Q 037414 269 KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP-DVKHYTC 347 (577)
Q Consensus 269 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~ 347 (577)
.+...|+.+...+...|++++|+..|+++++.. +-+...|..+..++...|++++|...++.+++. .| +...|+.
T Consensus 164 ~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l---~P~~~~a~~~ 239 (382)
T 2h6f_A 164 KNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQ 239 (382)
T ss_dssp TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCHHHHHH
Confidence 467889999999999999999999999999863 336778888999999999999999999999864 34 5788899
Q ss_pred HHHHHHH-cCCHHHH-----HHHHHhC-CCCC-CHhHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 037414 348 MVDLLGR-AGRLDEA-----LKLIESM-SVEK-DEGLWGALLGACRIHK--NVDLAEMAAKSLLERQPQNPGHYVLLSNV 417 (577)
Q Consensus 348 li~~~~~-~g~~~~A-----~~~~~~m-~~~p-~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 417 (577)
+..+|.+ .|..++| ++.|++. .+.| +...|..+...+...| ++++|...++++ +.+|+++..+..++.+
T Consensus 240 lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~ 318 (382)
T 2h6f_A 240 RYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDI 318 (382)
T ss_dssp HHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHH
T ss_pred HHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHH
Confidence 9999999 6665777 4667665 4456 5668998888888888 689999999998 8889999999999999
Q ss_pred HhccC---------ChhHHHHHHHHH-hhC
Q 037414 418 YANAG---------RWQDVAKIRDLM-TRR 437 (577)
Q Consensus 418 ~~~~g---------~~~~A~~~~~~m-~~~ 437 (577)
|.+.| .+++|.++++++ .+.
T Consensus 319 ~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 319 YEDMLENQCDNKEDILNKALELCEILAKEK 348 (382)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhcccccchHHHHHHHHHHHHHHHHHh
Confidence 99874 358999999998 543
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.37 E-value=8e-12 Score=126.88 Aligned_cols=272 Identities=11% Similarity=-0.015 Sum_probs=196.7
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCc-----chHHHHHHHHhcCCChHHHHHHHHHHHHc----C-CCCcHHH
Q 037414 126 WSVMVGGFSKVADFINCFETFREFIRCGMQLDS-----YTLPFVIRACRDRKDIVMGRLIHDIVLKS----G-LDIDQFV 195 (577)
Q Consensus 126 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----g-~~~~~~~ 195 (577)
+..+...+...|++++|+..|++..+. .|+. ..+..+...+...|++++|...+++.++. + .+....+
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQA--GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHh--cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 344555677777777777777777764 3332 35666666777778888887777766553 1 1223567
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCC-----------------HHH
Q 037414 196 CAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGS-----------------IDS 258 (577)
Q Consensus 196 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~-----------------~~~ 258 (577)
+..+...|...|++++|...|++..+..... ...+....++..+...|...|+ +++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~ 201 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQL-------GDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTR 201 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-------TCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh-------hchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHH
Confidence 7888888999999999999888764310000 0011235578889999999999 999
Q ss_pred HHHHHHhccC-----C----ChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCC-CC----HHHHHHHHHHHhccCCHHH
Q 037414 259 AREIFDRMRQ-----K----NVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVL-PN----RITFVSLLYACSHTGLVEE 324 (577)
Q Consensus 259 A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~t~~~ll~a~~~~g~~~~ 324 (577)
|...+++..+ . ....|..+...|...|++++|+..|++..+.... ++ ..++..+...+...|++++
T Consensus 202 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 281 (411)
T 4a1s_A 202 AVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFED 281 (411)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHH
Confidence 9999887643 1 2347888899999999999999999998764111 12 2367788889999999999
Q ss_pred HHHHHHHhhHhcCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHhC-CC---CCC----HhHHHHHHHHHHhcCCHHH
Q 037414 325 GLRLFSSMWDDFAVRP----DVKHYTCMVDLLGRAGRLDEALKLIESM-SV---EKD----EGLWGALLGACRIHKNVDL 392 (577)
Q Consensus 325 a~~~~~~m~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~---~p~----~~~~~~ll~~~~~~g~~~~ 392 (577)
|...++..++...-.. ....+..+...|...|++++|.+.+++. .. .++ ..++..+...+...|++++
T Consensus 282 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 361 (411)
T 4a1s_A 282 AAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHER 361 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHH
Confidence 9999998865321111 1567788889999999999999999876 11 112 3477888889999999999
Q ss_pred HHHHHHHHHhcCCC
Q 037414 393 AEMAAKSLLERQPQ 406 (577)
Q Consensus 393 a~~~~~~~~~~~p~ 406 (577)
|...++++++..+.
T Consensus 362 A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 362 ALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999887654
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.35 E-value=1.2e-10 Score=103.83 Aligned_cols=166 Identities=11% Similarity=0.047 Sum_probs=116.6
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHH
Q 037414 270 NVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMV 349 (577)
Q Consensus 270 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 349 (577)
+...|..+...|.+.|++++|++.|++..+.. +-+..++..+...+...|++++|...+...... .+.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 34556666666777777777777777666542 224556666666777777777777777766543 223355566666
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHH
Q 037414 350 DLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDV 427 (577)
Q Consensus 350 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 427 (577)
..+...+++++|.+.+++. ...| +...+..+...+...|++++|+..++++++.+|.++.+|..++.+|.+.|++++|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 6777777777777777765 2233 4557777777888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhhCC
Q 037414 428 AKIRDLMTRRR 438 (577)
Q Consensus 428 ~~~~~~m~~~g 438 (577)
.+.+++..+..
T Consensus 161 ~~~~~~al~~~ 171 (184)
T 3vtx_A 161 VKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHhCC
Confidence 88888776543
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.5e-11 Score=126.65 Aligned_cols=310 Identities=12% Similarity=0.026 Sum_probs=213.2
Q ss_pred HHHHHHcCCChHHHHHHHhcCCCC-CcchHHHHHHHHHhCCCh---hHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCC-
Q 037414 98 LLYIYALHKALTDAHALFNGMKER-DSVSWSVMVGGFSKVADF---INCFETFREFIRCGMQLDSYTLPFVIRACRDRK- 172 (577)
Q Consensus 98 li~~~~~~g~~~~A~~~f~~m~~~-~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~- 172 (577)
+...+.+.|++++|.+.|.+..++ +...+..|...|...|++ ++|++.|++..+. +...+..+...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC--------------------------------CHHHHHHHHHTC--
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCC
Confidence 556677889999999999887553 566677777777788888 8999999988854 4455555655444443
Q ss_pred ----ChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHH---HHHHhhCCCCChhHHHHHHhcCCCCcchhhHHH
Q 037414 173 ----DIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDA---RQLFDQMPTRDLVTWTVMIGANKFLLDVILGTA 245 (577)
Q Consensus 173 ----~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A---~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~ 245 (577)
+.++|...+++..+.|.+ + .+..|..+|...+..+++ .+.+....+. .+......
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~g~~-~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~---------------g~~~a~~~ 146 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFANGEG-N--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAA---------------GYPEAGLA 146 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCS-S--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHH---------------TCTTHHHH
T ss_pred CCCcCHHHHHHHHHHHHHCCCH-H--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHC---------------CCHHHHHH
Confidence 788999999999998743 3 667788888776654433 2222222111 13456677
Q ss_pred HHHHHHhcC----CHHHHHHHHHhccCCChhhHHHHHHHHHHcC---ChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhc
Q 037414 246 VIDMYAKCG----SIDSAREIFDRMRQKNVISWSAMIAAYGYHG---QGKKALDLFPMMLSSRVLPNRITFVSLLYACSH 318 (577)
Q Consensus 246 Li~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 318 (577)
|...|...+ +.+.+..+++.....++..+..+...|...| +.++|++.|++..+.| .++...+..+...|..
T Consensus 147 Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~ 225 (452)
T 3e4b_A 147 QVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGD 225 (452)
T ss_dssp HHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTC
T ss_pred HHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhC
Confidence 888888887 5666777777777777779999999999999 9999999999999987 4455554556666765
Q ss_pred c----CCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHH-H--HHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcC---
Q 037414 319 T----GLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDL-L--GRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHK--- 388 (577)
Q Consensus 319 ~----g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g--- 388 (577)
. ++.++|...|+... +-+...+..|... | ...+++++|.+.|++.-...+...+..|...|. .|
T Consensus 226 g~~~~~d~~~A~~~~~~aa-----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~ 299 (452)
T 3e4b_A 226 ATLGTPDEKTAQALLEKIA-----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWV 299 (452)
T ss_dssp GGGSSCCHHHHHHHHHHHG-----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSS
T ss_pred CCCCCCCHHHHHHHHHHHc-----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCC
Confidence 5 79999999999885 2345566666666 4 568999999999998732336777777777776 55
Q ss_pred --CHHHHHHHHHHHHhcCCCCchhHHHHHHHHhc----cCChhHHHHHHHHHhhCCC
Q 037414 389 --NVDLAEMAAKSLLERQPQNPGHYVLLSNVYAN----AGRWQDVAKIRDLMTRRRL 439 (577)
Q Consensus 389 --~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~ 439 (577)
+.++|...|++.. |.++..+..|..+|.. ..++++|.+.+++..+.|.
T Consensus 300 ~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 300 PADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp CCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred CCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence 9999999999998 8888999999999987 4499999999999888764
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.34 E-value=8.1e-12 Score=129.44 Aligned_cols=192 Identities=11% Similarity=0.034 Sum_probs=170.2
Q ss_pred chhhHHHHHHHHHhcCCH-HHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 037414 239 DVILGTAVIDMYAKCGSI-DSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLY 314 (577)
Q Consensus 239 ~~~~~~~Li~~~~~~g~~-~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 314 (577)
+...+..+...|...|++ ++|.+.|++..+ .+...|..+...|.+.|++++|.+.|++..+. .|+...+..+..
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~ 178 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSM 178 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHH
Confidence 567888899999999999 999999998864 45778999999999999999999999999985 577788889999
Q ss_pred HHhcc---------CCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHhC-CCCC----
Q 037414 315 ACSHT---------GLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRA--------GRLDEALKLIESM-SVEK---- 372 (577)
Q Consensus 315 a~~~~---------g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~--------g~~~~A~~~~~~m-~~~p---- 372 (577)
.+... |++++|.+.+++.++. -+.+...|..+..+|... |++++|.+.|++. ...|
T Consensus 179 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 256 (474)
T 4abn_A 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASS 256 (474)
T ss_dssp HHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGG
T ss_pred HHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCccc
Confidence 99999 9999999999999864 233578888999999998 9999999999988 4455
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHH
Q 037414 373 DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLM 434 (577)
Q Consensus 373 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 434 (577)
+...|..+...+...|++++|...++++++.+|+++.++..+..++...|++++|.+.+..+
T Consensus 257 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 257 NPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 67799999999999999999999999999999999999999999999999999998765433
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.33 E-value=6.5e-10 Score=108.16 Aligned_cols=218 Identities=9% Similarity=0.027 Sum_probs=170.8
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHH-------hCCCH-------HHHHHHHhhCCC-CChhHHHHHHhcCCCCcc
Q 037414 175 VMGRLIHDIVLKSGLDIDQFVCAALVDMYA-------KCKVI-------DDARQLFDQMPT-RDLVTWTVMIGANKFLLD 239 (577)
Q Consensus 175 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~m~~-~~~~~~~~~i~~~g~~~~ 239 (577)
++|..+|+++++.. +.+..+|..++..+. +.|++ ++|..+|++..+ -+ +.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~-------------p~~ 98 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL-------------KKN 98 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT-------------TTC
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC-------------ccc
Confidence 57778888888764 567778888877775 35875 899999998765 22 124
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhccC--CC-hh-hHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 037414 240 VILGTAVIDMYAKCGSIDSAREIFDRMRQ--KN-VI-SWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYA 315 (577)
Q Consensus 240 ~~~~~~Li~~~~~~g~~~~A~~~~~~~~~--~~-~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 315 (577)
..+|..++..+.+.|++++|..+|++..+ |+ .. .|..++..+.+.|++++|..+|++..+.. +++...|......
T Consensus 99 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~ 177 (308)
T 2ond_A 99 MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALM 177 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 56888899999999999999999999875 33 33 79999999999999999999999998764 2344445433333
Q ss_pred H-hccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-C---CCC--CHhHHHHHHHHHHhcC
Q 037414 316 C-SHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-S---VEK--DEGLWGALLGACRIHK 388 (577)
Q Consensus 316 ~-~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~---~~p--~~~~~~~ll~~~~~~g 388 (577)
. ...|+.++|..+|+..++.. +.+...|..++..+.+.|++++|..+|++. . ..| ....|..++......|
T Consensus 178 ~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g 255 (308)
T 2ond_A 178 EYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIG 255 (308)
T ss_dssp HHHTSCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHS
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcC
Confidence 2 23699999999999998653 235788889999999999999999999987 2 344 3558999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCch
Q 037414 389 NVDLAEMAAKSLLERQPQNPG 409 (577)
Q Consensus 389 ~~~~a~~~~~~~~~~~p~~~~ 409 (577)
+.+.|..+++++.+..|+++.
T Consensus 256 ~~~~a~~~~~~a~~~~p~~~~ 276 (308)
T 2ond_A 256 DLASILKVEKRRFTAFREEYE 276 (308)
T ss_dssp CHHHHHHHHHHHHHHTTTTTS
T ss_pred CHHHHHHHHHHHHHHcccccc
Confidence 999999999999999988653
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.30 E-value=8.1e-11 Score=104.91 Aligned_cols=167 Identities=14% Similarity=0.053 Sum_probs=144.5
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 037414 239 DVILGTAVIDMYAKCGSIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYA 315 (577)
Q Consensus 239 ~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 315 (577)
+..+|..|...|.+.|++++|...|++..+ .+...|..+...|.+.|++++|+..+.+..... +-+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 567899999999999999999999999864 466789999999999999999999999988763 3355667777788
Q ss_pred HhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHH
Q 037414 316 CSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLA 393 (577)
Q Consensus 316 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a 393 (577)
+...++++.+...+....+. .+.+...+..+...|.+.|++++|++.|++. ...| +..+|..+...+...|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 89999999999999998753 2345778889999999999999999999987 4445 567899999999999999999
Q ss_pred HHHHHHHHhcCCCCc
Q 037414 394 EMAAKSLLERQPQNP 408 (577)
Q Consensus 394 ~~~~~~~~~~~p~~~ 408 (577)
+..++++++.+|+++
T Consensus 161 ~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 161 VKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHTTHHHH
T ss_pred HHHHHHHHhCCccCH
Confidence 999999999998764
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.30 E-value=3.5e-10 Score=110.11 Aligned_cols=214 Identities=11% Similarity=0.097 Sum_probs=152.7
Q ss_pred hHHHHHHHHHHHCCCCCCcchHHHHHHHHh-------cCCCh-------HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Q 037414 140 INCFETFREFIRCGMQLDSYTLPFVIRACR-------DRKDI-------VMGRLIHDIVLKSGLDIDQFVCAALVDMYAK 205 (577)
Q Consensus 140 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 205 (577)
++|+.+|++..... +-+...|..+...+. +.|++ ++|..++++.++.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56777787777641 224555666555543 35775 7888888888873124456688888888888
Q ss_pred CCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchh-hHHHHHHHHHhcCCHHHHHHHHHhccC--C-ChhhHHHHHHHH
Q 037414 206 CKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVI-LGTAVIDMYAKCGSIDSAREIFDRMRQ--K-NVISWSAMIAAY 281 (577)
Q Consensus 206 ~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~-~~~~Li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~ 281 (577)
.|++++|.++|++..+.++ .+.. +|..++..+.+.|++++|..+|++..+ | +...|.......
T Consensus 112 ~~~~~~A~~~~~~al~~~p-------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~ 178 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIED-------------IDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALME 178 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSS-------------SCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccc-------------cCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 8888888888888765321 1233 778888888888899999999888765 2 233343332222
Q ss_pred H-HcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC--CHHHHHHHHHHHHHcCCH
Q 037414 282 G-YHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP--DVKHYTCMVDLLGRAGRL 358 (577)
Q Consensus 282 ~-~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p--~~~~~~~li~~~~~~g~~ 358 (577)
. ..|+.++|..+|++..+.. +-+...+..++..+.+.|++++|..+|+..++...+.| ....|..++..+.+.|+.
T Consensus 179 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~ 257 (308)
T 2ond_A 179 YYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL 257 (308)
T ss_dssp HHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 2 2689999999999887752 23566778888888888999999999999876423455 356788888888889999
Q ss_pred HHHHHHHHhC
Q 037414 359 DEALKLIESM 368 (577)
Q Consensus 359 ~~A~~~~~~m 368 (577)
++|..+++++
T Consensus 258 ~~a~~~~~~a 267 (308)
T 2ond_A 258 ASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988887
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.30 E-value=5.8e-11 Score=119.48 Aligned_cols=230 Identities=9% Similarity=-0.015 Sum_probs=171.7
Q ss_pred HHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCc-chhhHHHHHHHHHhcCCHHHHHHHHHhccC-----CC-
Q 037414 198 ALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLL-DVILGTAVIDMYAKCGSIDSAREIFDRMRQ-----KN- 270 (577)
Q Consensus 198 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~-~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~-----~~- 270 (577)
.....+...|++++|...|++..+.-.. .+-++ ...++..+...|...|++++|...+++..+ ++
T Consensus 108 ~~g~~~~~~g~~~~A~~~~~~al~~~~~--------~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 179 (383)
T 3ulq_A 108 FRGMYELDQREYLSAIKFFKKAESKLIF--------VKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY 179 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGG--------CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHhh--------CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence 3566788899999999999887542000 00011 356788999999999999999999988753 22
Q ss_pred ----hhhHHHHHHHHHHcCChHHHHHHHHHhhhC----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhhHhc---CC
Q 037414 271 ----VISWSAMIAAYGYHGQGKKALDLFPMMLSS----RVLPN-RITFVSLLYACSHTGLVEEGLRLFSSMWDDF---AV 338 (577)
Q Consensus 271 ----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~ 338 (577)
..+++.+...|...|++++|+..|++..+. +-.+. ..++..+...|...|++++|...+++.++-. +.
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence 347888899999999999999999988753 11111 2477888899999999999999999887521 22
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-----CCC-HhHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCC
Q 037414 339 -RPDVKHYTCMVDLLGRAGRLDEALKLIESM-SV-----EKD-EGLWGALLGACRIHKN---VDLAEMAAKSLLERQPQN 407 (577)
Q Consensus 339 -~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-----~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~ 407 (577)
+....++..+...|.+.|++++|.+.+++. .+ .|. ...+..+...+...|+ .++|..++++. ...|..
T Consensus 260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~ 338 (383)
T 3ulq_A 260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADL 338 (383)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHH
T ss_pred chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHH
Confidence 223667888999999999999999999876 11 122 2245666677888888 67777777665 222444
Q ss_pred chhHHHHHHHHhccCChhHHHHHHHHHhh
Q 037414 408 PGHYVLLSNVYANAGRWQDVAKIRDLMTR 436 (577)
Q Consensus 408 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 436 (577)
...+..++..|...|++++|...+++..+
T Consensus 339 ~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 339 EDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 56788999999999999999999998765
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=6.7e-12 Score=121.84 Aligned_cols=241 Identities=15% Similarity=0.127 Sum_probs=167.5
Q ss_pred CcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC--
Q 037414 191 IDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ-- 268 (577)
Q Consensus 191 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~-- 268 (577)
.+..++..+...|...|++++|..+|+++.+.-... .+...+....++..+...|...|++++|...|++..+
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~-----~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 99 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKT-----SGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR 99 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-----HCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH-----cCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 346778888889999999999999988875410000 0001122456788899999999999999999988753
Q ss_pred -----C----ChhhHHHHHHHHHHcCChHHHHHHHHHhhhC------CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 037414 269 -----K----NVISWSAMIAAYGYHGQGKKALDLFPMMLSS------RVLP-NRITFVSLLYACSHTGLVEEGLRLFSSM 332 (577)
Q Consensus 269 -----~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m 332 (577)
+ ....|..+...|...|++++|...|++..+. +..| ....+..+...+...|++++|.++++.+
T Consensus 100 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 179 (311)
T 3nf1_A 100 EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRA 179 (311)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1 2456888899999999999999999998764 2223 3456778888999999999999999998
Q ss_pred hHhc-----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhCC----------CCCCH-------hHHHHHHHHHHhcCC
Q 037414 333 WDDF-----AVRP-DVKHYTCMVDLLGRAGRLDEALKLIESMS----------VEKDE-------GLWGALLGACRIHKN 389 (577)
Q Consensus 333 ~~~~-----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~----------~~p~~-------~~~~~ll~~~~~~g~ 389 (577)
.+.. +..| ....+..+...|.+.|++++|.+.++++- ..+.. ..+..+...+...+.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (311)
T 3nf1_A 180 LEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTS 259 (311)
T ss_dssp HHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CC
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHH
Confidence 7531 1122 34678888999999999999999998761 11211 122223333445556
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhh
Q 037414 390 VDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTR 436 (577)
Q Consensus 390 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 436 (577)
+.++...++......|..+.++..++.+|.+.|++++|.+.+++..+
T Consensus 260 ~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 260 FGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp SCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66677778888777888888999999999999999999999988764
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.26 E-value=8.6e-11 Score=118.22 Aligned_cols=234 Identities=9% Similarity=-0.050 Sum_probs=177.9
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHc----CCCC-cHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCC-CC
Q 037414 164 VIRACRDRKDIVMGRLIHDIVLKS----GLDI-DQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANK-FL 237 (577)
Q Consensus 164 ll~~~~~~~~~~~a~~~~~~~~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g-~~ 237 (577)
....+...|++++|...+.+..+. +-++ ...++..+...|...|++++|...+++..+-.... .+ .+
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~-------~~~~~ 181 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEH-------EAYNI 181 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC-------STTHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-------ccchH
Confidence 344567889999999999988764 1111 34678889999999999999999888764310000 00 01
Q ss_pred cchhhHHHHHHHHHhcCCHHHHHHHHHhccC-----CC----hhhHHHHHHHHHHcCChHHHHHHHHHhhhC----CC-C
Q 037414 238 LDVILGTAVIDMYAKCGSIDSAREIFDRMRQ-----KN----VISWSAMIAAYGYHGQGKKALDLFPMMLSS----RV-L 303 (577)
Q Consensus 238 ~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~-~ 303 (577)
....+++.+...|...|++++|...|++..+ ++ ..++..+...|...|++++|+..|++..+. +. +
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 261 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP 261 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch
Confidence 1345788899999999999999999998763 22 247888999999999999999999998772 33 3
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcC---CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHhCCCCCCHh-H
Q 037414 304 PNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFA---VRPDVKHYTCMVDLLGRAGR---LDEALKLIESMSVEKDEG-L 376 (577)
Q Consensus 304 p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~---~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~p~~~-~ 376 (577)
....++..+...+...|++++|...++..++... -+.....+..+...|...|+ +++|..++++.+..|+.. .
T Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~ 341 (383)
T 3ulq_A 262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDF 341 (383)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHH
Confidence 3456788899999999999999999998865321 11123345667788889999 999999999986555433 6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 037414 377 WGALLGACRIHKNVDLAEMAAKSLLERQ 404 (577)
Q Consensus 377 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 404 (577)
+..+...+...|++++|...++++++..
T Consensus 342 ~~~la~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 342 AIDVAKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 7778888999999999999999998754
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.25 E-value=6.1e-10 Score=98.65 Aligned_cols=161 Identities=17% Similarity=0.068 Sum_probs=103.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHH
Q 037414 274 WSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLG 353 (577)
Q Consensus 274 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~ 353 (577)
|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++.+.+. .+.+...+..+...|.
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHH
Confidence 4444555555555555555555554431 223445555555666666666666666665532 1234555666666666
Q ss_pred HcCCHHHHHHHHHhC-CC-CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHH
Q 037414 354 RAGRLDEALKLIESM-SV-EKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIR 431 (577)
Q Consensus 354 ~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 431 (577)
..|++++|.+.++++ .. ..+...|..+...+...|++++|...++++.+..|.++..+..++.+|...|++++|.+.+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 677777777766665 11 2345567777777777888888888888888888877778888888888888888888888
Q ss_pred HHHhhC
Q 037414 432 DLMTRR 437 (577)
Q Consensus 432 ~~m~~~ 437 (577)
+...+.
T Consensus 168 ~~~~~~ 173 (186)
T 3as5_A 168 KKANEL 173 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 776653
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.22 E-value=3e-09 Score=106.40 Aligned_cols=261 Identities=11% Similarity=0.030 Sum_probs=168.7
Q ss_pred HhcCCChHHHHHHHHHHHHcCCCCcH----HHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCC-Ccchhh
Q 037414 168 CRDRKDIVMGRLIHDIVLKSGLDIDQ----FVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKF-LLDVIL 242 (577)
Q Consensus 168 ~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~-~~~~~~ 242 (577)
+...|++++|...+++.+......+. .+++.+...|...|++++|...+++..+.... .+. .....+
T Consensus 24 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~--------~~~~~~~~~~ 95 (373)
T 1hz4_A 24 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQ--------HDVWHYALWS 95 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH--------TTCHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHh--------cCcHHHHHHH
Confidence 34455666666665555544311111 14455556666777777777777664321000 000 001234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccC-------C----ChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCC----CCHH
Q 037414 243 GTAVIDMYAKCGSIDSAREIFDRMRQ-------K----NVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVL----PNRI 307 (577)
Q Consensus 243 ~~~Li~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~----p~~~ 307 (577)
++.+...|...|++++|...+++..+ + ....+..+...+...|++++|...+++....... ....
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 56677788888888888888877642 1 1234566778888899999999999887653211 1235
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHH-----HHHHHHHHcCCHHHHHHHHHhC-CCCCC-----HhH
Q 037414 308 TFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYT-----CMVDLLGRAGRLDEALKLIESM-SVEKD-----EGL 376 (577)
Q Consensus 308 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~m-~~~p~-----~~~ 376 (577)
++..+...+...|++++|...++...+...-......+. ..+..+...|++++|...+++. ...|. ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 677777888889999999999988864321111111121 2334577899999999999887 22221 224
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-----C-chhHHHHHHHHhccCChhHHHHHHHHHhh
Q 037414 377 WGALLGACRIHKNVDLAEMAAKSLLERQPQ-----N-PGHYVLLSNVYANAGRWQDVAKIRDLMTR 436 (577)
Q Consensus 377 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~-----~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 436 (577)
+..+...+...|++++|...++++.+..+. . ...+..+..+|...|++++|...+++..+
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 567778888999999999999988765322 1 23677788889999999999999887764
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=2e-10 Score=124.00 Aligned_cols=158 Identities=16% Similarity=0.223 Sum_probs=94.8
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHhhhCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC-HHHHHHHHH
Q 037414 273 SWSAMIAAYGYHGQGKKALDLFPMMLSSRVLP-NRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD-VKHYTCMVD 350 (577)
Q Consensus 273 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~ 350 (577)
+|+.+...|.+.|++++|++.|++.++. .| +..++..+..+|.+.|++++|.+.|++.++ +.|+ ...|..+..
T Consensus 11 al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~---l~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 11 SLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHH
Confidence 3444445555555555555555554442 22 234455555555555555555555555543 2332 455555666
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHH
Q 037414 351 LLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVA 428 (577)
Q Consensus 351 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 428 (577)
+|.+.|++++|++.|++. .+.| +...|..+...+...|++++|+..++++++.+|+++..|..|+.+|...|+|++|.
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHH
Confidence 666666666666666555 3334 34567777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHh
Q 037414 429 KIRDLMT 435 (577)
Q Consensus 429 ~~~~~m~ 435 (577)
+.+++..
T Consensus 166 ~~~~kal 172 (723)
T 4gyw_A 166 ERMKKLV 172 (723)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7666554
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.20 E-value=4.4e-11 Score=116.01 Aligned_cols=242 Identities=12% Similarity=0.048 Sum_probs=153.8
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHc-------CCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHh
Q 037414 160 TLPFVIRACRDRKDIVMGRLIHDIVLKS-------GLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG 232 (577)
Q Consensus 160 t~~~ll~~~~~~~~~~~a~~~~~~~~~~-------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~ 232 (577)
++..+...+...|++++|..+++++++. ..+....++..+...|...|++++|...|++..+.... ..
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~----~~- 103 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK----TL- 103 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----HH-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH----Hh-
Confidence 3444444555555555555555555442 22334556777777788888888888777765421000 00
Q ss_pred cCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC-------C----ChhhHHHHHHHHHHcCChHHHHHHHHHhhhC-
Q 037414 233 ANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ-------K----NVISWSAMIAAYGYHGQGKKALDLFPMMLSS- 300 (577)
Q Consensus 233 ~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~- 300 (577)
+...+....++..+...|...|++++|...|++..+ + ....|..+...|...|++++|++.|+++.+.
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 000122456788899999999999999999998753 1 2346888899999999999999999998764
Q ss_pred -----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhhHhc------CCCCC-------HHHHHHHHHHHHHcCCHHHH
Q 037414 301 -----RVLPN-RITFVSLLYACSHTGLVEEGLRLFSSMWDDF------AVRPD-------VKHYTCMVDLLGRAGRLDEA 361 (577)
Q Consensus 301 -----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~------~~~p~-------~~~~~~li~~~~~~g~~~~A 361 (577)
+..|+ ..++..+...+...|++++|...++.+++.. ...+. ...+..+...+...+.+.+|
T Consensus 184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 263 (311)
T 3nf1_A 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEY 263 (311)
T ss_dssp HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCC
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 22333 3467788899999999999999999987521 11121 12222233344445556666
Q ss_pred HHHHHhCC-CCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 037414 362 LKLIESMS-VEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQ 406 (577)
Q Consensus 362 ~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 406 (577)
...++... ..| +..+|..+...+...|++++|...++++++..|.
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 264 GGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp C---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 66666652 233 3458888999999999999999999999987664
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.20 E-value=4.5e-10 Score=116.28 Aligned_cols=211 Identities=14% Similarity=0.021 Sum_probs=161.8
Q ss_pred hhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHh
Q 037414 139 FINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDI-VMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFD 217 (577)
Q Consensus 139 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 217 (577)
++++++.+++.... .+.+...+..+...+...|++ ++|...+++.++.. +.+..++..+..+|.+.|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 56677777766553 223666778888888999999 99999999998875 5568899999999999999999999999
Q ss_pred hCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhc---------CCHHHHHHHHHhccC---CChhhHHHHHHHHHHc-
Q 037414 218 QMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKC---------GSIDSAREIFDRMRQ---KNVISWSAMIAAYGYH- 284 (577)
Q Consensus 218 ~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~---------g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~- 284 (577)
+..+. .|+...+..+...|... |++++|...|++..+ .+...|..+..+|...
T Consensus 162 ~al~~--------------~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 227 (474)
T 4abn_A 162 GALTH--------------CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLY 227 (474)
T ss_dssp HHHTT--------------CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHhh--------------CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 87653 24556778888888888 889999998888763 4567788888888887
Q ss_pred -------CChHHHHHHHHHhhhCCCC--CCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-CHHHHHHHHHHHHH
Q 037414 285 -------GQGKKALDLFPMMLSSRVL--PNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP-DVKHYTCMVDLLGR 354 (577)
Q Consensus 285 -------g~~~~A~~l~~~m~~~g~~--p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~ 354 (577)
|++++|+..|++..+.... -+...+..+..+|...|++++|.+.|+..++. .| +...+..+...+..
T Consensus 228 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---~p~~~~a~~~l~~~~~~ 304 (474)
T 4abn_A 228 FNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL---DPAWPEPQQREQQLLEF 304 (474)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHH
T ss_pred HhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHH
Confidence 8888888888888774210 36677777888888888888888888887643 33 35567777777777
Q ss_pred cCCHHHHHHHHHhC
Q 037414 355 AGRLDEALKLIESM 368 (577)
Q Consensus 355 ~g~~~~A~~~~~~m 368 (577)
.|++++|.+.+.++
T Consensus 305 lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 305 LSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHhccc
Confidence 77777777766554
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.19 E-value=3.5e-10 Score=113.52 Aligned_cols=308 Identities=12% Similarity=0.025 Sum_probs=191.0
Q ss_pred CCCCHHHHHHHHHHH--HcCCChHHHHHHHhcCCC------C--CcchHHHHHHH--HHhCCChhHHH---------HHH
Q 037414 88 TLTNLIVANKLLYIY--ALHKALTDAHALFNGMKE------R--DSVSWSVMVGG--FSKVADFINCF---------ETF 146 (577)
Q Consensus 88 ~~~~~~~~~~li~~~--~~~g~~~~A~~~f~~m~~------~--~~~~~~~li~~--~~~~g~~~~A~---------~~~ 146 (577)
..|+..+.+.|-..| .+.+++++|.++++++.+ . ++..|-.++.. ..-.+....+. +.+
T Consensus 6 ~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l 85 (378)
T 3q15_A 6 AIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELL 85 (378)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHH
Confidence 456777788888887 789999999988876532 1 23333333332 11112222222 555
Q ss_pred HHHHHCCCCCCc--c--hHHHHHHHHhcCCChHHHHHHHHHHHHcCC-CC----cHHHHHHHHHHHHhCCCHHHHHHHHh
Q 037414 147 REFIRCGMQLDS--Y--TLPFVIRACRDRKDIVMGRLIHDIVLKSGL-DI----DQFVCAALVDMYAKCKVIDDARQLFD 217 (577)
Q Consensus 147 ~~m~~~g~~p~~--~--t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~----~~~~~~~li~~~~~~g~~~~A~~~~~ 217 (577)
+.+.....+.+. . .+......+...|++++|...+.+..+... .+ ...++..+...|...|++++|...++
T Consensus 86 ~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~ 165 (378)
T 3q15_A 86 ETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHIL 165 (378)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 555432111111 1 122223346788999999999999876421 12 25678889999999999999998887
Q ss_pred hCCCCChhHHHHHHhcCCCC-cchhhHHHHHHHHHhcCCHHHHHHHHHhccC-----CC----hhhHHHHHHHHHHcCCh
Q 037414 218 QMPTRDLVTWTVMIGANKFL-LDVILGTAVIDMYAKCGSIDSAREIFDRMRQ-----KN----VISWSAMIAAYGYHGQG 287 (577)
Q Consensus 218 ~m~~~~~~~~~~~i~~~g~~-~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~ 287 (577)
+..+-.... .+.. ....+++.+...|...|++++|...|++..+ ++ ..+++.+...|...|++
T Consensus 166 ~al~~~~~~-------~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~ 238 (378)
T 3q15_A 166 QALDIYQNH-------PLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDD 238 (378)
T ss_dssp HHHHHHHTS-------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhC-------CCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCH
Confidence 754210000 0001 1245777888889999999999988887653 22 24577778888888888
Q ss_pred HHHHHHHHHhhhC----CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCC--C-CHHHHHHHHHHHHHcCC---
Q 037414 288 KKALDLFPMMLSS----RVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVR--P-DVKHYTCMVDLLGRAGR--- 357 (577)
Q Consensus 288 ~~A~~l~~~m~~~----g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~--p-~~~~~~~li~~~~~~g~--- 357 (577)
++|+..|++..+. +.+....++..+...+...|+.++|...++..++...-. | ....+..+...|...|+
T Consensus 239 ~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~ 318 (378)
T 3q15_A 239 QMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERK 318 (378)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHH
T ss_pred HHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHH
Confidence 8888888887761 122225567777778888888888888888776532211 1 13345555556666666
Q ss_pred HHHHHHHHHhCCCCCCHh-HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037414 358 LDEALKLIESMSVEKDEG-LWGALLGACRIHKNVDLAEMAAKSLLE 402 (577)
Q Consensus 358 ~~~A~~~~~~m~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~ 402 (577)
+++|...+++.+..|+.. .+..+...+...|++++|...++++.+
T Consensus 319 ~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 319 IHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 777777777754333322 445556666677777777766666654
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.18 E-value=1.8e-09 Score=95.59 Aligned_cols=168 Identities=14% Similarity=0.019 Sum_probs=144.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 037414 240 VILGTAVIDMYAKCGSIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYAC 316 (577)
Q Consensus 240 ~~~~~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 316 (577)
...+..+...|...|++++|...|+++.+ .+...|..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 45677889999999999999999999875 456788899999999999999999999998763 44677888889999
Q ss_pred hccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHH
Q 037414 317 SHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAE 394 (577)
Q Consensus 317 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~ 394 (577)
...|++++|.+.++.+.+. .+.+...+..+...|...|++++|.+.+++. ...| +...|..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999764 3446788888999999999999999999987 2233 5678999999999999999999
Q ss_pred HHHHHHHhcCCCCchh
Q 037414 395 MAAKSLLERQPQNPGH 410 (577)
Q Consensus 395 ~~~~~~~~~~p~~~~~ 410 (577)
..++++.+..|+++..
T Consensus 165 ~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 165 PHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHcCCCchhh
Confidence 9999999988876543
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.17 E-value=5.4e-09 Score=104.48 Aligned_cols=269 Identities=6% Similarity=-0.116 Sum_probs=185.0
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCCcc----hHHHHHHHHhcCCChHHHHHHHHHHHHcCC-CCc----HHHHHH
Q 037414 128 VMVGGFSKVADFINCFETFREFIRCGMQLDSY----TLPFVIRACRDRKDIVMGRLIHDIVLKSGL-DID----QFVCAA 198 (577)
Q Consensus 128 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~----~~~~~~ 198 (577)
.....+...|++++|...+++........+.. ++..+...+...|++++|...+.+..+... ..+ ..++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 34445667888888888888877753211221 344555667778999999888887765321 111 234667
Q ss_pred HHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCC---CcchhhHHHHHHHHHhcCCHHHHHHHHHhccC--C----
Q 037414 199 LVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKF---LLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ--K---- 269 (577)
Q Consensus 199 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~---~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~--~---- 269 (577)
+...|...|++++|...+++..+.... .+. +....++..+...|...|++++|...+++..+ +
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~--------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 170 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINE--------QHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP 170 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHH--------TTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCG
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHH--------hccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCc
Confidence 888899999999999998876431100 011 11345667788999999999999999998653 1
Q ss_pred --ChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCC--HHHHH----HHHHHHhccCCHHHHHHHHHHhhHhcCCCC-
Q 037414 270 --NVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPN--RITFV----SLLYACSHTGLVEEGLRLFSSMWDDFAVRP- 340 (577)
Q Consensus 270 --~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~----~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p- 340 (577)
....|..+...+...|++++|...+++.......++ ..... ..+..+...|++++|...++...+. ...+
T Consensus 171 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~-~~~~~ 249 (373)
T 1hz4_A 171 QQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP-EFANN 249 (373)
T ss_dssp GGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC-CCTTC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC-CCCcc
Confidence 124677888889999999999999998865321111 11111 2334477899999999999988642 1111
Q ss_pred --CHHHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCCHh-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 037414 341 --DVKHYTCMVDLLGRAGRLDEALKLIESM-------SVEKDEG-LWGALLGACRIHKNVDLAEMAAKSLLERQP 405 (577)
Q Consensus 341 --~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 405 (577)
....+..+...+...|++++|.+.+++. +..++.. .+..+..++...|+.++|...++++.+..+
T Consensus 250 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 250 HFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 1235667788899999999999998876 2111222 566667778999999999999999887643
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.9e-09 Score=99.64 Aligned_cols=175 Identities=11% Similarity=-0.034 Sum_probs=137.3
Q ss_pred cchhhHHHHHHHHHhcCCHHHHHHHHHhccC----CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCC-CHHHHHHH
Q 037414 238 LDVILGTAVIDMYAKCGSIDSAREIFDRMRQ----KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLP-NRITFVSL 312 (577)
Q Consensus 238 ~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~l 312 (577)
.|+..+..+...|.+.|++++|...|++..+ ++...|..+...+...|++++|+..|++..+. .| +...+..+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 82 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGK 82 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHH
Confidence 3567788889999999999999999998753 56777777899999999999999999999875 34 45678888
Q ss_pred HHHHhccCCHHHHHHHHHHhhHhcCCCCC-H-------HHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC---HhHHHHH
Q 037414 313 LYACSHTGLVEEGLRLFSSMWDDFAVRPD-V-------KHYTCMVDLLGRAGRLDEALKLIESM-SVEKD---EGLWGAL 380 (577)
Q Consensus 313 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~-------~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~---~~~~~~l 380 (577)
...+...|++++|...++..++. .|+ . ..|..+...+.+.|++++|.+.|++. ...|+ ...|..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l 159 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKA---VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHH
Confidence 89999999999999999999864 343 3 45777788889999999999999887 56676 3477777
Q ss_pred HHHHHhcCCH---------------------------HHHHHHHHHHHhcCCCCchhHHHHHHH
Q 037414 381 LGACRIHKNV---------------------------DLAEMAAKSLLERQPQNPGHYVLLSNV 417 (577)
Q Consensus 381 l~~~~~~g~~---------------------------~~a~~~~~~~~~~~p~~~~~~~~l~~~ 417 (577)
...+...|+. ++|...++++++.+|+++.+...+..+
T Consensus 160 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 160 GVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 7777766665 666677777777777666555544433
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.9e-09 Score=108.21 Aligned_cols=302 Identities=10% Similarity=-0.030 Sum_probs=200.5
Q ss_pred HHHHHHH--HhCCChhHHHHHHHHHHHC--CCCCC--cchHHHHHHHH--hcCCChHHHH---------HHHHHHHHcCC
Q 037414 127 SVMVGGF--SKVADFINCFETFREFIRC--GMQLD--SYTLPFVIRAC--RDRKDIVMGR---------LIHDIVLKSGL 189 (577)
Q Consensus 127 ~~li~~~--~~~g~~~~A~~~~~~m~~~--g~~p~--~~t~~~ll~~~--~~~~~~~~a~---------~~~~~~~~~g~ 189 (577)
+.|-..| ...+++++|.+++++..+. .++.| ...|-.++..- .-.+.+.... ..++.+.....
T Consensus 14 ~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~ 93 (378)
T 3q15_A 14 VKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQK 93 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGH
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCC
Confidence 3344444 7789999999999988663 23223 22333443321 1111111122 55555433221
Q ss_pred CCc----HHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHh
Q 037414 190 DID----QFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDR 265 (577)
Q Consensus 190 ~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~ 265 (577)
+.+ ...+......+...|++++|...|++..+.-... ...+....++..+...|...|+++.|...+++
T Consensus 94 ~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~ 166 (378)
T 3q15_A 94 KLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFV-------SDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166 (378)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC-------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhC-------CChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 111 1123344556788999999999998875421000 00011356788899999999999999999887
Q ss_pred ccC-----CC-----hhhHHHHHHHHHHcCChHHHHHHHHHhhhC----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHH
Q 037414 266 MRQ-----KN-----VISWSAMIAAYGYHGQGKKALDLFPMMLSS----RVLP-NRITFVSLLYACSHTGLVEEGLRLFS 330 (577)
Q Consensus 266 ~~~-----~~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~ 330 (577)
..+ ++ ..+++.+...|...|++++|.+.|++..+. +..+ ...++..+...|...|++++|...++
T Consensus 167 al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~ 246 (378)
T 3q15_A 167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQ 246 (378)
T ss_dssp HHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 653 22 346888999999999999999999988753 2111 13467788889999999999999999
Q ss_pred HhhHhc---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC----CC--CCC-HhHHHHHHHHHHhcCC---HHHHHHHH
Q 037414 331 SMWDDF---AVRPDVKHYTCMVDLLGRAGRLDEALKLIESM----SV--EKD-EGLWGALLGACRIHKN---VDLAEMAA 397 (577)
Q Consensus 331 ~m~~~~---~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~--~p~-~~~~~~ll~~~~~~g~---~~~a~~~~ 397 (577)
+.++-. +.+....++..+...|.+.|++++|.+.+++. .. .|. ...+..+...+...++ .++|...+
T Consensus 247 ~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~ 326 (378)
T 3q15_A 247 KAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYF 326 (378)
T ss_dssp HHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 887511 22223677888889999999999999999886 11 222 2245555556677777 67777776
Q ss_pred HHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhh
Q 037414 398 KSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTR 436 (577)
Q Consensus 398 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 436 (577)
++. ...|.....+..++..|...|++++|.+.+++..+
T Consensus 327 ~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 327 EKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 652 12234456778899999999999999999987754
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.08 E-value=7e-08 Score=102.97 Aligned_cols=380 Identities=9% Similarity=0.020 Sum_probs=220.7
Q ss_pred CCChhhHHHHHHhccC---hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC---hHHHHHHHhcCCC-----CCcch
Q 037414 57 SVDPKFFISSLLSCRN---IFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKA---LTDAHALFNGMKE-----RDSVS 125 (577)
Q Consensus 57 ~p~~~~~~~ll~a~~~---~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~~f~~m~~-----~~~~~ 125 (577)
+-|..+|..++..+.. +..++.+++.+++. ++.+...|..-+..-.+.|+ ++.+..+|++... +++..
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 3466677777776643 88899999998877 47788889988888888888 9999999998654 56667
Q ss_pred HHHHHHHHHhCCCh--------hHHHHHHHHHHH-CCC-CCCc-chHHHHHHHHh---------cCCChHHHHHHHHHHH
Q 037414 126 WSVMVGGFSKVADF--------INCFETFREFIR-CGM-QLDS-YTLPFVIRACR---------DRKDIVMGRLIHDIVL 185 (577)
Q Consensus 126 ~~~li~~~~~~g~~--------~~A~~~~~~m~~-~g~-~p~~-~t~~~ll~~~~---------~~~~~~~a~~~~~~~~ 185 (577)
|..-+.-..+.++. +.+.++|+..+. .|. .|+. ..|...+.... ..++++.++.+|.+++
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 88777655554443 334477776554 466 5644 45555554432 1234677888888887
Q ss_pred HcCCCCcHHHHHHHHHHHHh-------------CCCHHHHHHHHhhC-------CC---CC-------------------
Q 037414 186 KSGLDIDQFVCAALVDMYAK-------------CKVIDDARQLFDQM-------PT---RD------------------- 223 (577)
Q Consensus 186 ~~g~~~~~~~~~~li~~~~~-------------~g~~~~A~~~~~~m-------~~---~~------------------- 223 (577)
......-..+|......--. ..+++.|...+.++ .. +.
T Consensus 222 ~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~q 301 (679)
T 4e6h_A 222 CQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQ 301 (679)
T ss_dssp TSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHH
T ss_pred hCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHH
Confidence 53111112333222111100 11233344444331 10 00
Q ss_pred hhHHHHHHhc-------------------------CCCCcchhhHHHHHHHHHhcCCHHHHH-HHHHhccC--C-ChhhH
Q 037414 224 LVTWTVMIGA-------------------------NKFLLDVILGTAVIDMYAKCGSIDSAR-EIFDRMRQ--K-NVISW 274 (577)
Q Consensus 224 ~~~~~~~i~~-------------------------~g~~~~~~~~~~Li~~~~~~g~~~~A~-~~~~~~~~--~-~~~~~ 274 (577)
...|...+.- .-++-+..+|-..+..+...|+.++|. .+|++... | +...|
T Consensus 302 l~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lw 381 (679)
T 4e6h_A 302 LLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLA 381 (679)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHH
Confidence 0111111110 112223344444555556667777775 77776653 3 34456
Q ss_pred HHHHHHHHHcCChHHHHHHHHHhhhCCC---------CCC------------HHHHHHHHHHHhccCCHHHHHHHHHHhh
Q 037414 275 SAMIAAYGYHGQGKKALDLFPMMLSSRV---------LPN------------RITFVSLLYACSHTGLVEEGLRLFSSMW 333 (577)
Q Consensus 275 ~~li~~~~~~g~~~~A~~l~~~m~~~g~---------~p~------------~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 333 (577)
-..+...-+.|++++|.++|+++..... .|+ ...|...+....+.|.++.|..+|...+
T Consensus 382 l~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~ 461 (679)
T 4e6h_A 382 FSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCR 461 (679)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6667777777778888877777765310 131 2245666666666777778888887776
Q ss_pred HhcCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHhC--CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---C
Q 037414 334 DDFAVRPDVKHYTCMVDLLGRA-GRLDEALKLIESM--SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQ---N 407 (577)
Q Consensus 334 ~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~ 407 (577)
+..+ .+....|...+..-.+. ++.+.|.++|+.. ....+...|...+......|+.+.|..+|+++++..|+ .
T Consensus 462 ~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~ 540 (679)
T 4e6h_A 462 RLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLL 540 (679)
T ss_dssp HTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHH
T ss_pred HhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHH
Confidence 4311 11223333333222333 3477777777766 21224556667777677777888888888887777663 3
Q ss_pred chhHHHHHHHHhccCChhHHHHHHHHHhhCC
Q 037414 408 PGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 408 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
...|...+..-.+.|+.+.+.++.+++.+.-
T Consensus 541 ~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 541 KMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp HHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3566667777777788888888877777654
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.06 E-value=1.2e-07 Score=101.11 Aligned_cols=362 Identities=10% Similarity=0.044 Sum_probs=247.9
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHhcCCCC---CcchHHHHHHHHHhCCC---hhHHHHHHHHH
Q 037414 76 IRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKER---DSVSWSVMVGGFSKVAD---FINCFETFREF 149 (577)
Q Consensus 76 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~---~~~A~~~~~~m 149 (577)
-...++..++.. +.|...|..++..+.+.+.++.++.+|+++... ....|..-+..-.+.+. ++.+.++|++.
T Consensus 51 ~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRa 129 (679)
T 4e6h_A 51 VIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARC 129 (679)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHH
Confidence 334455555555 679999999999999999999999999988652 55678888888888888 99999999999
Q ss_pred HHCC-CCCCcchHHHHHHHHhcCCCh--------HHHHHHHHHHHH-cCC-CCc-HHHHHHHHHHHHh---------CCC
Q 037414 150 IRCG-MQLDSYTLPFVIRACRDRKDI--------VMGRLIHDIVLK-SGL-DID-QFVCAALVDMYAK---------CKV 208 (577)
Q Consensus 150 ~~~g-~~p~~~t~~~ll~~~~~~~~~--------~~a~~~~~~~~~-~g~-~~~-~~~~~~li~~~~~---------~g~ 208 (577)
+... ..|+...|..-+....+.++. +.+.++|+..+. .|. .++ ...|...+..... .++
T Consensus 130 l~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~ 209 (679)
T 4e6h_A 130 LSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQR 209 (679)
T ss_dssp TCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhH
Confidence 8863 237777777776654444433 345578887665 365 454 5788888876543 345
Q ss_pred HHHHHHHHhhCCCCCh----hHHH---HHHhc-------------------------------CCC----Cc--------
Q 037414 209 IDDARQLFDQMPTRDL----VTWT---VMIGA-------------------------------NKF----LL-------- 238 (577)
Q Consensus 209 ~~~A~~~~~~m~~~~~----~~~~---~~i~~-------------------------------~g~----~~-------- 238 (577)
++.+.++|++...-.. ..|. .+... .++ +.
T Consensus 210 ~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~ 289 (679)
T 4e6h_A 210 VQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATES 289 (679)
T ss_dssp HHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTT
T ss_pred HHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhc
Confidence 7889999988764211 1221 11000 011 00
Q ss_pred -----------chhhHHHHHHHHHhcC-------CHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHH-HHHHH
Q 037414 239 -----------DVILGTAVIDMYAKCG-------SIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKAL-DLFPM 296 (577)
Q Consensus 239 -----------~~~~~~~Li~~~~~~g-------~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~-~l~~~ 296 (577)
....|...+..--..+ ..+.+..+|++... .+...|-..+.-+...|+.++|. ++|++
T Consensus 290 ~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~r 369 (679)
T 4e6h_A 290 NLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKL 369 (679)
T ss_dssp TSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHH
T ss_pred cCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 0123444443322222 12234455666543 34566777777778889999997 99999
Q ss_pred hhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcC--------CCCC------------HHHHHHHHHHHHHcC
Q 037414 297 MLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFA--------VRPD------------VKHYTCMVDLLGRAG 356 (577)
Q Consensus 297 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--------~~p~------------~~~~~~li~~~~~~g 356 (577)
.... .+.+...+...+......|++++|.++|+.+++... -.|+ ...|...+....+.|
T Consensus 370 Ai~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~ 448 (679)
T 4e6h_A 370 GQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQ 448 (679)
T ss_dssp HHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcC
Confidence 8864 445565666778888889999999999999975310 0132 346888888888999
Q ss_pred CHHHHHHHHHhCCCC-C--CHhHHHHHHHHHHh-cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHH
Q 037414 357 RLDEALKLIESMSVE-K--DEGLWGALLGACRI-HKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRD 432 (577)
Q Consensus 357 ~~~~A~~~~~~m~~~-p--~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 432 (577)
.++.|..+|.+.-.. | ....|......-.+ .++.+.|..+|+.+++..|.++..+...+......|+.+.|..+|+
T Consensus 449 ~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lfe 528 (679)
T 4e6h_A 449 GLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFE 528 (679)
T ss_dssp CHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 999999999987212 2 23344433333333 3569999999999999999999888889998889999999999999
Q ss_pred HHhhCCC
Q 037414 433 LMTRRRL 439 (577)
Q Consensus 433 ~m~~~g~ 439 (577)
.......
T Consensus 529 ral~~~~ 535 (679)
T 4e6h_A 529 SSIDKIS 535 (679)
T ss_dssp HHTTTSS
T ss_pred HHHHhcC
Confidence 9887654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.06 E-value=5e-09 Score=96.77 Aligned_cols=166 Identities=8% Similarity=-0.062 Sum_probs=142.6
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-CHHHHHH
Q 037414 269 KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP-DVKHYTC 347 (577)
Q Consensus 269 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~ 347 (577)
.|+..|......+...|++++|+..|++..+...+++...+..+..++...|++++|...++..++ ..| +...+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~ 81 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK---KNYNLANAYIG 81 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCSHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH---hCcchHHHHHH
Confidence 456778888999999999999999999999875447888887889999999999999999999974 345 4678889
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCCC-H-------hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CchhHHHHHH
Q 037414 348 MVDLLGRAGRLDEALKLIESM-SVEKD-E-------GLWGALLGACRIHKNVDLAEMAAKSLLERQPQ--NPGHYVLLSN 416 (577)
Q Consensus 348 li~~~~~~g~~~~A~~~~~~m-~~~p~-~-------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~ 416 (577)
+...|...|++++|.+.+++. ...|+ . ..|..+...+...|++++|+..++++++.+|. ++..+..+..
T Consensus 82 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 82 KSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 999999999999999999987 33443 3 45777888899999999999999999999999 8899999999
Q ss_pred HHhccCCh---------------------------hHHHHHHHHHhhC
Q 037414 417 VYANAGRW---------------------------QDVAKIRDLMTRR 437 (577)
Q Consensus 417 ~~~~~g~~---------------------------~~A~~~~~~m~~~ 437 (577)
+|...|+. ++|...+++..+.
T Consensus 162 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 162 LFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99988888 7788888777653
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.01 E-value=3.7e-09 Score=100.57 Aligned_cols=228 Identities=15% Similarity=0.152 Sum_probs=150.0
Q ss_pred HhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC-----------CChh
Q 037414 204 AKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ-----------KNVI 272 (577)
Q Consensus 204 ~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~-----------~~~~ 272 (577)
...|++++|...|++..+. +..+.. ...+....++..+...|...|++++|...|++..+ ....
T Consensus 12 ~~~~~~~~A~~~~~~al~~----~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALED----LEKTSG-HDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAA 86 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHH----HHHHHC-SSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH----HHHhcC-CCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHH
Confidence 4568888888888876541 222211 12233467788888899999999999988887652 1234
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHhhhC------CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhHhc-----CCCC
Q 037414 273 SWSAMIAAYGYHGQGKKALDLFPMMLSS------RVLP-NRITFVSLLYACSHTGLVEEGLRLFSSMWDDF-----AVRP 340 (577)
Q Consensus 273 ~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-----~~~p 340 (577)
+|..+...|...|++++|.+.|++.... ...| ...++..+...+...|++++|..+++.+++.. +-.|
T Consensus 87 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 166 (283)
T 3edt_B 87 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDP 166 (283)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 6788888888999999999999888764 1123 34567778888888999999999988886531 1122
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHhC----------CCCCCH-hHHHHHHHHHHhcCCH------HHHHHHHHHHHh
Q 037414 341 -DVKHYTCMVDLLGRAGRLDEALKLIESM----------SVEKDE-GLWGALLGACRIHKNV------DLAEMAAKSLLE 402 (577)
Q Consensus 341 -~~~~~~~li~~~~~~g~~~~A~~~~~~m----------~~~p~~-~~~~~ll~~~~~~g~~------~~a~~~~~~~~~ 402 (577)
....+..+...|.+.|++++|.+.+++. ...+.. ..|..+.......+.. ..+...++....
T Consensus 167 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (283)
T 3edt_B 167 NVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV 246 (283)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC
Confidence 3567778888888999999998888766 112222 2444433333333322 222222222222
Q ss_pred cCCCCchhHHHHHHHHhccCChhHHHHHHHHHhh
Q 037414 403 RQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTR 436 (577)
Q Consensus 403 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 436 (577)
..|..+.++..++.+|...|++++|.+.+++..+
T Consensus 247 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 247 DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2344556888999999999999999999998764
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.01 E-value=4.8e-08 Score=94.04 Aligned_cols=26 Identities=4% Similarity=-0.065 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHhhC
Q 037414 194 FVCAALVDMYAKCKVIDDARQLFDQM 219 (577)
Q Consensus 194 ~~~~~li~~~~~~g~~~~A~~~~~~m 219 (577)
.+++.+..+|.+.|++++|...|++.
T Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~A 103 (292)
T 1qqe_A 78 NTYVEAYKCFKSGGNSVNAVDSLENA 103 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 44555555566666666665555543
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=4.5e-09 Score=113.49 Aligned_cols=163 Identities=11% Similarity=0.099 Sum_probs=143.7
Q ss_pred CcchhhHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCC-CHHHHHHH
Q 037414 237 LLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLP-NRITFVSL 312 (577)
Q Consensus 237 ~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~l 312 (577)
+.+...++.|...|.+.|++++|.+.|++..+ .+...|+.+...|.+.|++++|++.|++.++. .| +...+..+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 34578999999999999999999999999864 45778999999999999999999999999885 44 46789999
Q ss_pred HHHHhccCCHHHHHHHHHHhhHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCC
Q 037414 313 LYACSHTGLVEEGLRLFSSMWDDFAVRP-DVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKN 389 (577)
Q Consensus 313 l~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~ 389 (577)
..++...|++++|.+.|++.++. .| +...|..+..+|.+.|++++|++.|++. .+.| +...|..+...+...|+
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhccc
Confidence 99999999999999999999853 45 4788999999999999999999999987 5566 45689999999999999
Q ss_pred HHHHHHHHHHHHhcC
Q 037414 390 VDLAEMAAKSLLERQ 404 (577)
Q Consensus 390 ~~~a~~~~~~~~~~~ 404 (577)
+++|.+.++++++..
T Consensus 161 ~~~A~~~~~kal~l~ 175 (723)
T 4gyw_A 161 WTDYDERMKKLVSIV 175 (723)
T ss_dssp CTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999988754
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.96 E-value=5.2e-08 Score=91.96 Aligned_cols=204 Identities=10% Similarity=0.039 Sum_probs=126.3
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHhccC--CC----hhhHHHHHHHHHHcCChHHHHHHHHHhhhCCC-CCC-HHHHH
Q 037414 239 DVILGTAVIDMYAKCGSIDSAREIFDRMRQ--KN----VISWSAMIAAYGYHGQGKKALDLFPMMLSSRV-LPN-RITFV 310 (577)
Q Consensus 239 ~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~-~~t~~ 310 (577)
+...+..+...+.+.|++++|...|+++.+ |+ ...+..+...|.+.|++++|+..|++..+... .|+ ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 345555666666677777777777776653 22 34555666666677777777777776665421 112 23444
Q ss_pred HHHHHHhc--------cCCHHHHHHHHHHhhHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHH
Q 037414 311 SLLYACSH--------TGLVEEGLRLFSSMWDDFAVRPD-VKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381 (577)
Q Consensus 311 ~ll~a~~~--------~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll 381 (577)
.+..++.. .|++++|...|+.+++.+ |+ .....++.......+.+ ...+..+.
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la 155 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY---PNHELVDDATQKIRELRAKL---------------ARKQYEAA 155 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC---TTCTTHHHHHHHHHHHHHHH---------------HHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC---cCchhHHHHHHHHHHHHHHH---------------HHHHHHHH
Confidence 45555555 666666666666665432 22 11111111110000000 01245667
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCC---chhHHHHHHHHhcc----------CChhHHHHHHHHHhhCCCccCCceeEE
Q 037414 382 GACRIHKNVDLAEMAAKSLLERQPQN---PGHYVLLSNVYANA----------GRWQDVAKIRDLMTRRRLKKIPGWTWI 448 (577)
Q Consensus 382 ~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~g~~~~~~~s~~ 448 (577)
..+...|++++|+..++++++..|++ +..+..++.+|... |++++|...+++..+...
T Consensus 156 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p--------- 226 (261)
T 3qky_A 156 RLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP--------- 226 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT---------
T ss_pred HHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC---------
Confidence 78899999999999999999999885 45788899999876 899999999999876432
Q ss_pred EECCEEEEEEecCCCCcccHHHHHHHHHHHHHHHH
Q 037414 449 EVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLEL 483 (577)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~ 483 (577)
.+|...++...+..+...+.+
T Consensus 227 --------------~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 227 --------------DSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp --------------TCTHHHHHHHHHHHHHHHHHH
T ss_pred --------------CChHHHHHHHHHHHHHHHHHH
Confidence 234456666666666666654
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.93 E-value=2.7e-08 Score=93.96 Aligned_cols=164 Identities=13% Similarity=0.067 Sum_probs=113.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhccC--CC----hhhHHHHHHHHHH--------cCChHHHHHHHHHhhhCCCCCC
Q 037414 240 VILGTAVIDMYAKCGSIDSAREIFDRMRQ--KN----VISWSAMIAAYGY--------HGQGKKALDLFPMMLSSRVLPN 305 (577)
Q Consensus 240 ~~~~~~Li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~--------~g~~~~A~~l~~~m~~~g~~p~ 305 (577)
...+..+..+|.+.|++++|...|++..+ |+ ...+..+..++.. .|++++|+..|++..+. .|+
T Consensus 52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~ 129 (261)
T 3qky_A 52 ADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPN 129 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTT
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcC
Confidence 67888999999999999999999999864 32 3457777888888 99999999999999875 333
Q ss_pred H-HHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HhHHHH
Q 037414 306 R-ITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEKD----EGLWGA 379 (577)
Q Consensus 306 ~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ 379 (577)
. ..... ...+...... -...+..+...|.+.|++++|...|++. ...|+ ...+..
T Consensus 130 ~~~~~~a--------------~~~~~~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 190 (261)
T 3qky_A 130 HELVDDA--------------TQKIRELRAK-----LARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVG 190 (261)
T ss_dssp CTTHHHH--------------HHHHHHHHHH-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHH
T ss_pred chhHHHH--------------HHHHHHHHHH-----HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHH
Confidence 2 11111 1111111100 0122456677888999999999999887 22343 336666
Q ss_pred HHHHHHhc----------CCHHHHHHHHHHHHhcCCCCchh---HHHHHHHHhccCCh
Q 037414 380 LLGACRIH----------KNVDLAEMAAKSLLERQPQNPGH---YVLLSNVYANAGRW 424 (577)
Q Consensus 380 ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~ 424 (577)
+..++... |++++|...++++++..|+++.. +..+..++...+++
T Consensus 191 l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 191 AMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTEL 248 (261)
T ss_dssp HHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHh
Confidence 77777755 88999999999999999998643 33444444444433
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.93 E-value=1.2e-08 Score=98.26 Aligned_cols=188 Identities=11% Similarity=0.034 Sum_probs=138.6
Q ss_pred HHHHHhcCCHHHHHHHHHhccC-----CC----hhhHHHHHHHHHHcCChHHHHHHHHHhhhC----CCCCC-HHHHHHH
Q 037414 247 IDMYAKCGSIDSAREIFDRMRQ-----KN----VISWSAMIAAYGYHGQGKKALDLFPMMLSS----RVLPN-RITFVSL 312 (577)
Q Consensus 247 i~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~l 312 (577)
...|...|++++|...|++..+ .+ ..+|+.+...|...|++++|+..|++..+. |-.+. ..++..+
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 123 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5568889999999999987753 12 457899999999999999999999988753 21111 3478888
Q ss_pred HHHHhcc-CCHHHHHHHHHHhhHhcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC---H-----hHHH
Q 037414 313 LYACSHT-GLVEEGLRLFSSMWDDFAVRPD----VKHYTCMVDLLGRAGRLDEALKLIESM-SVEKD---E-----GLWG 378 (577)
Q Consensus 313 l~a~~~~-g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~---~-----~~~~ 378 (577)
...|... |++++|...|++.++-..-..+ ..++..+...|.+.|++++|...|++. ...|+ . ..|.
T Consensus 124 g~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 203 (292)
T 1qqe_A 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (292)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 8899996 9999999999998753211111 356888899999999999999999987 22332 1 1567
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchh-----HHHHHHHHh--ccCChhHHHHHHHHH
Q 037414 379 ALLGACRIHKNVDLAEMAAKSLLERQPQNPGH-----YVLLSNVYA--NAGRWQDVAKIRDLM 434 (577)
Q Consensus 379 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~~~A~~~~~~m 434 (577)
.+..++...|++++|...+++.++..|..... +..++..|. ..+++++|.+.++.+
T Consensus 204 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 204 KKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 77788999999999999999999998875543 345666664 567788888887554
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.91 E-value=1.2e-07 Score=87.30 Aligned_cols=184 Identities=11% Similarity=0.004 Sum_probs=119.0
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHhccC--CCh----hhHHHHHHHHHHcCChHHHHHHHHHhhhCCCC-CCH-HHHH
Q 037414 239 DVILGTAVIDMYAKCGSIDSAREIFDRMRQ--KNV----ISWSAMIAAYGYHGQGKKALDLFPMMLSSRVL-PNR-ITFV 310 (577)
Q Consensus 239 ~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~-~t~~ 310 (577)
+...+..+...+.+.|++++|...|+++.+ |+. ..+..+..+|.+.|++++|+..|++..+.... +.. ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 344566677778888888888888888764 332 35677788888888888888888888764322 111 1333
Q ss_pred HHHHHHhc------------------cCCHHHHHHHHHHhhHhcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHhCCCC
Q 037414 311 SLLYACSH------------------TGLVEEGLRLFSSMWDDFAVRPDV-KHYTCMVDLLGRAGRLDEALKLIESMSVE 371 (577)
Q Consensus 311 ~ll~a~~~------------------~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 371 (577)
.+..++.. .|+.++|...|+.+++. .|+. ..+.+.... +.+....
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l----~~~~~~~--------- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRL----VFLKDRL--------- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHH----HHHHHHH---------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHH----HHHHHHH---------
Confidence 33333332 34555666666655532 2221 111111100 0000000
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc---hhHHHHHHHHhccCChhHHHHHHHHHhhCCCc
Q 037414 372 KDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNP---GHYVLLSNVYANAGRWQDVAKIRDLMTRRRLK 440 (577)
Q Consensus 372 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 440 (577)
......+...+...|++++|+..++++++..|+++ .++..+..+|.+.|++++|.+.++.+...+..
T Consensus 147 --~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 --AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred --HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 00112445668889999999999999999999876 56889999999999999999999999876653
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.91 E-value=5.2e-08 Score=80.78 Aligned_cols=126 Identities=16% Similarity=0.206 Sum_probs=77.4
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHhHHHHHHHHHHhc
Q 037414 310 VSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVE-KDEGLWGALLGACRIH 387 (577)
Q Consensus 310 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~ 387 (577)
..+...+...|++++|..+++.+.+. .+.+...+..+...+...|++++|.+.++++ ... .+...|..+...+...
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 33444445555555555555555432 1223444555555555666666666666554 112 2445666666677777
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhC
Q 037414 388 KNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRR 437 (577)
Q Consensus 388 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 437 (577)
|++++|...++++.+..|.++..+..++.+|...|++++|.+.++++.+.
T Consensus 83 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 77777777777777777777777777777777777777777777776543
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.91 E-value=1.9e-07 Score=88.79 Aligned_cols=164 Identities=11% Similarity=0.025 Sum_probs=117.8
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhccCC-----ChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCC-----CHHHH
Q 037414 240 VILGTAVIDMYAKCGSIDSAREIFDRMRQK-----NVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLP-----NRITF 309 (577)
Q Consensus 240 ~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-----~~~t~ 309 (577)
......+..+|...|++++|++++.+.... +...+..++..+.+.|+.+.|.+.+++|.+. .| +..+.
T Consensus 100 ~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l 177 (310)
T 3mv2_B 100 PYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMI 177 (310)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHH
Confidence 334457778888888888888888887442 3456777788899999999999999998774 56 35566
Q ss_pred HHHHHHH--hccC--CHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CC----------CC-C
Q 037414 310 VSLLYAC--SHTG--LVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SV----------EK-D 373 (577)
Q Consensus 310 ~~ll~a~--~~~g--~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~----------~p-~ 373 (577)
..+..++ ...| +.++|..+|+++.++ .|+......++.++.+.|++++|++.++.+ .. .| |
T Consensus 178 ~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~ 254 (310)
T 3mv2_B 178 LNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYK 254 (310)
T ss_dssp HHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSH
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCC
Confidence 6666663 2234 888999999998643 355333344555788899999999998765 21 24 4
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchh
Q 037414 374 EGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGH 410 (577)
Q Consensus 374 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 410 (577)
+.+...++......|+ .|.++++++.+..|+++..
T Consensus 255 ~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 255 PTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp HHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred HHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 5566566666666676 8889999999999998743
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.87 E-value=9.1e-09 Score=97.82 Aligned_cols=228 Identities=11% Similarity=0.010 Sum_probs=144.1
Q ss_pred HhCCChhHHHHHHHHHHHC-------CCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHc------CC-CCcHHHHHHH
Q 037414 134 SKVADFINCFETFREFIRC-------GMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKS------GL-DIDQFVCAAL 199 (577)
Q Consensus 134 ~~~g~~~~A~~~~~~m~~~-------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------g~-~~~~~~~~~l 199 (577)
...|++++|+.+|++..+. ..+....++..+...+...|++++|...+.++++. +- +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3455666666666555441 11123456677777788888888888888877764 22 2345678888
Q ss_pred HHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccCC--------C-
Q 037414 200 VDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQK--------N- 270 (577)
Q Consensus 200 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~--------~- 270 (577)
...|...|++++|.+.|++..+.-... .+...+....++..+...|...|++++|...|++..+. +
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 166 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKV-----LGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDP 166 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHH-----HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHH-----cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 899999999999999988765310000 00001224668889999999999999999999987531 2
Q ss_pred --hhhHHHHHHHHHHcCChHHHHHHHHHhhhC-------CCCCCHH-HHHHHHHHHhcc------CCHHHHHHHHHHhhH
Q 037414 271 --VISWSAMIAAYGYHGQGKKALDLFPMMLSS-------RVLPNRI-TFVSLLYACSHT------GLVEEGLRLFSSMWD 334 (577)
Q Consensus 271 --~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-------g~~p~~~-t~~~ll~a~~~~------g~~~~a~~~~~~m~~ 334 (577)
..++..+...|...|++++|...|++..+. ...+... .+..+....... ..+..+...+.....
T Consensus 167 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (283)
T 3edt_B 167 NVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV 246 (283)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC
Confidence 356888899999999999999999998763 1122222 222222222222 223334444433321
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 037414 335 DFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM 368 (577)
Q Consensus 335 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 368 (577)
..+.....+..+...|.+.|++++|.+++++.
T Consensus 247 --~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 278 (283)
T 3edt_B 247 --DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCA 278 (283)
T ss_dssp --CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 11223567888999999999999999999874
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.87 E-value=3.8e-07 Score=86.64 Aligned_cols=175 Identities=10% Similarity=0.028 Sum_probs=136.6
Q ss_pred HHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhH
Q 037414 259 AREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLP-NRITFVSLLYACSHTGLVEEGLRLFSSMWD 334 (577)
Q Consensus 259 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 334 (577)
|...|++..+ ++..++..+..++...|++++|++++.+.+..|..+ +...+...+..+.+.|+.+.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 7778887653 555666788899999999999999999987765423 456777888999999999999999999964
Q ss_pred hcCCCC-----CHHHHHHHHHH--HHHcC--CHHHHHHHHHhC-CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc-
Q 037414 335 DFAVRP-----DVKHYTCMVDL--LGRAG--RLDEALKLIESM-SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLER- 403 (577)
Q Consensus 335 ~~~~~p-----~~~~~~~li~~--~~~~g--~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~- 403 (577)
..| +..+...|..+ ....| +..+|..+|+++ ...|+..+-..++.++...|++++|+..++.+.+.
T Consensus 165 ---~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 ---AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp ---HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred ---cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 456 34555555555 33334 899999999999 43465344445556899999999999999988776
Q ss_pred ---------CCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCC
Q 037414 404 ---------QPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 404 ---------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
+|+++.++..++..+...|+ +|.+++.++.+..
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 48899999888888888887 8999999998754
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.85 E-value=1.2e-07 Score=78.52 Aligned_cols=131 Identities=17% Similarity=0.219 Sum_probs=88.0
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHH
Q 037414 273 SWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLL 352 (577)
Q Consensus 273 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 352 (577)
.|..+...+...|++++|..+|+++.+.. +.+...+..+...+...|++++|..+++.+.+. .+.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 45566666667777777777777766542 234555666666677777777777777776543 123455666677777
Q ss_pred HHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 037414 353 GRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQ 406 (577)
Q Consensus 353 ~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 406 (577)
.+.|++++|.+.++++ ...| +...|..+...+...|++++|...++++.+..|.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 7777777777777766 2223 4567777777788888888888888888777765
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=8.5e-09 Score=88.39 Aligned_cols=140 Identities=10% Similarity=0.002 Sum_probs=101.9
Q ss_pred HHHHHcCChHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-CHHHHHHHHHHHHHcC
Q 037414 279 AAYGYHGQGKKALDLFPMMLSSRVLPN-RITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP-DVKHYTCMVDLLGRAG 356 (577)
Q Consensus 279 ~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g 356 (577)
..+...|++++|++.+++.... .|+ ...+..+...|...|++++|.+.|+..++. .| +...|..+...|.+.|
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV---QERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcC
Confidence 3444566777777777776543 333 234456677778888888888888887643 34 4677788888888888
Q ss_pred CHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHH-HHHHHhcCCCCchhHHHHHHHHhccCC
Q 037414 357 RLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMA-AKSLLERQPQNPGHYVLLSNVYANAGR 423 (577)
Q Consensus 357 ~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~ 423 (577)
++++|...|++. .+.| +...|..+...+...|+.++|.+. ++++++.+|.++.+|......+...|+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 888888888776 4455 456888888888888888766554 588999999999888888888887775
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=1.2e-07 Score=90.89 Aligned_cols=176 Identities=10% Similarity=-0.046 Sum_probs=139.1
Q ss_pred HHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHh
Q 037414 256 IDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDD 335 (577)
Q Consensus 256 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 335 (577)
.+.....+......+...+..+...+.+.|++++|...|++..+.. +-+...+..+...+...|++++|...++.+.+
T Consensus 102 ~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~- 179 (287)
T 3qou_A 102 EEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPL- 179 (287)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG-
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCch-
Confidence 3444455555554555677788888999999999999999998752 33566788888999999999999999999864
Q ss_pred cCCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--chh
Q 037414 336 FAVRPDVKHYTCMV-DLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQN--PGH 410 (577)
Q Consensus 336 ~~~~p~~~~~~~li-~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~ 410 (577)
..|+........ ..+.+.++.++|.+.+++. ...| +...+..+...+...|++++|...++++++.+|.+ ...
T Consensus 180 --~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a 257 (287)
T 3qou_A 180 --QDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT 257 (287)
T ss_dssp --GGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred --hhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence 356554333333 2366778888888888776 3345 56789999999999999999999999999999987 789
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHh
Q 037414 411 YVLLSNVYANAGRWQDVAKIRDLMT 435 (577)
Q Consensus 411 ~~~l~~~~~~~g~~~~A~~~~~~m~ 435 (577)
+..++.+|...|+.++|...+++-.
T Consensus 258 ~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 258 RXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 9999999999999999998887543
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.80 E-value=2.4e-08 Score=108.02 Aligned_cols=168 Identities=13% Similarity=-0.048 Sum_probs=142.8
Q ss_pred HhcCCHHHHHHHHHhcc--------C---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcc
Q 037414 251 AKCGSIDSAREIFDRMR--------Q---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHT 319 (577)
Q Consensus 251 ~~~g~~~~A~~~~~~~~--------~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 319 (577)
...|++++|.+.|++.. + .+...|..+...|.+.|++++|++.|++..+.. +-+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 77899999999999886 2 456788889999999999999999999998752 33567888888899999
Q ss_pred CCHHHHHHHHHHhhHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHH
Q 037414 320 GLVEEGLRLFSSMWDDFAVRP-DVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMA 396 (577)
Q Consensus 320 g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~ 396 (577)
|++++|...|++.++. .| +...|..+...|.+.|++++ .+.|++. ...| +...|..+..++...|++++|+..
T Consensus 481 g~~~~A~~~~~~al~l---~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT---FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999853 45 46788899999999999999 9999887 4445 566899999999999999999999
Q ss_pred HHHHHhcCCCCchhHHHHHHHHhccCC
Q 037414 397 AKSLLERQPQNPGHYVLLSNVYANAGR 423 (577)
Q Consensus 397 ~~~~~~~~p~~~~~~~~l~~~~~~~g~ 423 (577)
++++++.+|.+..++..+..+|...|+
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCC
Confidence 999999999999999999999987666
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.74 E-value=2.1e-07 Score=90.17 Aligned_cols=154 Identities=10% Similarity=-0.005 Sum_probs=103.2
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHhhhC----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC----CHH
Q 037414 273 SWSAMIAAYGYHGQGKKALDLFPMMLSS----RVLP-NRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP----DVK 343 (577)
Q Consensus 273 ~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~ 343 (577)
+|+.+...|...|++++|+..|++..+. |-.. -..++..+...|.. |++++|...|++.++-..-.. ...
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~ 156 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAE 156 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHH
Confidence 5666677777777777777777765432 2111 13466677777877 899999888888764321111 145
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CC---CCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchh-----
Q 037414 344 HYTCMVDLLGRAGRLDEALKLIESM-SV---EKD----EGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGH----- 410 (577)
Q Consensus 344 ~~~~li~~~~~~g~~~~A~~~~~~m-~~---~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~----- 410 (577)
++..+...|.+.|++++|.+.|++. .+ .++ ...+..+...+...|++++|...+++.+ ..|....+
T Consensus 157 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~ 235 (307)
T 2ifu_A 157 LIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAA 235 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHH
Confidence 6777888899999999999988876 11 112 1256666677778899999999999999 88765432
Q ss_pred HHHHHHHHhccCChhHHHH
Q 037414 411 YVLLSNVYANAGRWQDVAK 429 (577)
Q Consensus 411 ~~~l~~~~~~~g~~~~A~~ 429 (577)
...++..| ..|+.+.+.+
T Consensus 236 l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 236 LEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHH-HhcCHHHHHH
Confidence 34455555 5677666555
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.72 E-value=9.7e-07 Score=80.33 Aligned_cols=173 Identities=8% Similarity=-0.071 Sum_probs=137.9
Q ss_pred HHHHHHHhccC-CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccC----CHHHHHHHHHHh
Q 037414 258 SAREIFDRMRQ-KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTG----LVEEGLRLFSSM 332 (577)
Q Consensus 258 ~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~m 332 (577)
+|.+.|++..+ .++..+..+...|...+++++|+..|++..+.| +...+..|-..|.. + +.++|.++|+..
T Consensus 4 eA~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 4 EPGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp CTTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 35555655543 577788888889999999999999999998876 55666677777777 6 899999999998
Q ss_pred hHhcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHhC-CCCCC---HhHHHHHHHHHHh----cCCHHHHHHHHHHH
Q 037414 333 WDDFAVRPDVKHYTCMVDLLGR----AGRLDEALKLIESM-SVEKD---EGLWGALLGACRI----HKNVDLAEMAAKSL 400 (577)
Q Consensus 333 ~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m-~~~p~---~~~~~~ll~~~~~----~g~~~~a~~~~~~~ 400 (577)
.+. -+...+..|...|.. .+++++|.++|++. ...|. ...+..|...|.. .++.++|...+++.
T Consensus 80 ~~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 80 VEA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp HHT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred HHC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 643 356677777788876 78999999999988 33342 6788888888888 78999999999999
Q ss_pred HhcCCCCchhHHHHHHHHhcc-C-----ChhHHHHHHHHHhhCCC
Q 037414 401 LERQPQNPGHYVLLSNVYANA-G-----RWQDVAKIRDLMTRRRL 439 (577)
Q Consensus 401 ~~~~p~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~m~~~g~ 439 (577)
.+. |.++..+..|..+|... | ++++|...++...+.|.
T Consensus 156 ~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 156 SSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 988 66677888999998764 3 89999999998887664
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.70 E-value=2.1e-07 Score=81.91 Aligned_cols=157 Identities=11% Similarity=-0.042 Sum_probs=92.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhc
Q 037414 242 LGTAVIDMYAKCGSIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSH 318 (577)
Q Consensus 242 ~~~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 318 (577)
....+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++.... .|+..... +...+
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~-~~~~~-- 82 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKS-LIAKL-- 82 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHH-HHHHH--
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHH-HHHHH--
Confidence 344555566666666666666666553 33455566666666666666666666665443 22222111 11000
Q ss_pred cCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHH
Q 037414 319 TGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMA 396 (577)
Q Consensus 319 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~ 396 (577)
. +...+...+|...+++. ...| +...+..+...+...|++++|...
T Consensus 83 -------------------------------~-~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~ 130 (176)
T 2r5s_A 83 -------------------------------E-LHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALEL 130 (176)
T ss_dssp -------------------------------H-HHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -------------------------------H-HHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHH
Confidence 0 00111112234444443 2244 456777777788888888888888
Q ss_pred HHHHHhcCCCC--chhHHHHHHHHhccCChhHHHHHHHHHh
Q 037414 397 AKSLLERQPQN--PGHYVLLSNVYANAGRWQDVAKIRDLMT 435 (577)
Q Consensus 397 ~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 435 (577)
++++++.+|.. +..+..+..+|...|+.++|...+++..
T Consensus 131 ~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 131 LWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 88888888764 4577888888888888888888777654
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.69 E-value=8.2e-07 Score=96.05 Aligned_cols=182 Identities=13% Similarity=-0.025 Sum_probs=141.0
Q ss_pred hcCCChHHHHHHHHHHH--------HcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcch
Q 037414 169 RDRKDIVMGRLIHDIVL--------KSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDV 240 (577)
Q Consensus 169 ~~~~~~~~a~~~~~~~~--------~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~ 240 (577)
...+++++|.+.+++.+ +.. +.+...+..+...|.+.|++++|.+.|++..+.+ +.+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-------------p~~~ 467 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-------------GWRW 467 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-------------CCCH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-------------cchH
Confidence 67889999999999887 432 5567788888999999999999999998876422 2256
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHh
Q 037414 241 ILGTAVIDMYAKCGSIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACS 317 (577)
Q Consensus 241 ~~~~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 317 (577)
..+..+..+|.+.|++++|...|++..+ .+...|..+...|.+.|++++ ++.|++..+.. +-+...+..+..++.
T Consensus 468 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~ 545 (681)
T 2pzi_A 468 RLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARS 545 (681)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHH
Confidence 6788888999999999999999998764 356788889999999999999 99999988753 335667888888999
Q ss_pred ccCCHHHHHHHHHHhhHhcCCCCC-HHHHHHHHHHHHHcCC--------HHHHHHHHHhCC
Q 037414 318 HTGLVEEGLRLFSSMWDDFAVRPD-VKHYTCMVDLLGRAGR--------LDEALKLIESMS 369 (577)
Q Consensus 318 ~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~--------~~~A~~~~~~m~ 369 (577)
..|++++|.+.|++++ .+.|+ ...+..+..+|...|+ +++|.+.+..+.
T Consensus 546 ~~g~~~~A~~~~~~al---~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~ 603 (681)
T 2pzi_A 546 AEGDRVGAVRTLDEVP---PTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALP 603 (681)
T ss_dssp HTTCHHHHHHHHHTSC---TTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSC
T ss_pred HcCCHHHHHHHHHhhc---ccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCC
Confidence 9999999999999886 45665 5666667777655443 677777777773
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=5.2e-07 Score=95.60 Aligned_cols=160 Identities=11% Similarity=0.017 Sum_probs=123.8
Q ss_pred cCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 037414 253 CGSIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLF 329 (577)
Q Consensus 253 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 329 (577)
.|++++|.+.|++..+ .+...|..+...|.+.|++++|.+.|++..+.. +.+...+..+..++...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4788999999998875 356789999999999999999999999998863 335678888999999999999999999
Q ss_pred HHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhc---CCHHHHHHHHHHHHhcC
Q 037414 330 SSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIH---KNVDLAEMAAKSLLERQ 404 (577)
Q Consensus 330 ~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~ 404 (577)
++.++. -+.+...+..+...|.+.|++++|.+.+++. ...| +...+..+...+... |+.++|...++++++.+
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 999864 2335788899999999999999999999987 3344 566888899999999 99999999999999999
Q ss_pred CCCchhHHHHH
Q 037414 405 PQNPGHYVLLS 415 (577)
Q Consensus 405 p~~~~~~~~l~ 415 (577)
|.+...|..+.
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 99888777665
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=2.9e-07 Score=97.52 Aligned_cols=151 Identities=14% Similarity=0.038 Sum_probs=117.1
Q ss_pred cCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 037414 284 HGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP-DVKHYTCMVDLLGRAGRLDEAL 362 (577)
Q Consensus 284 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~ 362 (577)
.|++++|++.|++..+.. +-+...+..+...+...|++++|.+.+++.++ ..| +...+..+...|.+.|++++|.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLA---LHPGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT---TSTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 478899999999988752 33467888899999999999999999999974 345 4788889999999999999999
Q ss_pred HHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhcc---CChhHHHHHHHHHhhC
Q 037414 363 KLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANA---GRWQDVAKIRDLMTRR 437 (577)
Q Consensus 363 ~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~A~~~~~~m~~~ 437 (577)
+.+++. ...| +...|..+...+...|++++|...++++++.+|.++..+..+..+|... |++++|.+.+++..+.
T Consensus 78 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 78 VLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 999987 3345 5678999999999999999999999999999999999999999999999 9999999999988665
Q ss_pred C
Q 037414 438 R 438 (577)
Q Consensus 438 g 438 (577)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=4.8e-07 Score=86.72 Aligned_cols=164 Identities=10% Similarity=0.031 Sum_probs=85.3
Q ss_pred CCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC-
Q 037414 190 DIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ- 268 (577)
Q Consensus 190 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~- 268 (577)
+.+...+..+...+...|++++|...|++..+.++ .+...+..|...|.+.|++++|...++++..
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-------------~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~ 180 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSN-------------QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ 180 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-------------SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-------------cchhHHHHHHHHHHHCCCHHHHHHHHHhCchh
Confidence 33444445555555556666666665555433211 1334455555555566666666666655543
Q ss_pred -CChhhHHH-HHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHH
Q 037414 269 -KNVISWSA-MIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYT 346 (577)
Q Consensus 269 -~~~~~~~~-li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~ 346 (577)
|+...... ....+.+.++.++|+..|++..... +.+...+..+..++...|++++|...|..+++...-..+...+.
T Consensus 181 ~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~ 259 (287)
T 3qou_A 181 DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRX 259 (287)
T ss_dssp GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHH
T ss_pred hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHH
Confidence 33222111 1222445555666666666665542 23445555666666666666666666666654311111244556
Q ss_pred HHHHHHHHcCCHHHHHHHHHh
Q 037414 347 CMVDLLGRAGRLDEALKLIES 367 (577)
Q Consensus 347 ~li~~~~~~g~~~~A~~~~~~ 367 (577)
.+...|...|+.++|...+++
T Consensus 260 ~l~~~~~~~g~~~~a~~~~r~ 280 (287)
T 3qou_A 260 TFQEILAALGTGDALASXYRR 280 (287)
T ss_dssp HHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHcCCCCcHHHHHHH
Confidence 666666666666666555543
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.65 E-value=1e-06 Score=81.00 Aligned_cols=149 Identities=16% Similarity=0.078 Sum_probs=104.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhccC--CChh----hHHHHHHHHHH------------------cCChHHHHHHHH
Q 037414 240 VILGTAVIDMYAKCGSIDSAREIFDRMRQ--KNVI----SWSAMIAAYGY------------------HGQGKKALDLFP 295 (577)
Q Consensus 240 ~~~~~~Li~~~~~~g~~~~A~~~~~~~~~--~~~~----~~~~li~~~~~------------------~g~~~~A~~l~~ 295 (577)
...+..+..+|.+.|++++|...|++..+ |+.. .+..+...+.. .|++++|+..|+
T Consensus 41 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 120 (225)
T 2yhc_A 41 QQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFS 120 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHH
Confidence 35788899999999999999999999864 4322 45555555554 578999999999
Q ss_pred HhhhCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC
Q 037414 296 MMLSSRVLPNRI-TFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEKD 373 (577)
Q Consensus 296 ~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 373 (577)
++.+. .|+.. ...... +. ..+...+ ......+...|.+.|++++|...|+++ ...|+
T Consensus 121 ~~l~~--~P~~~~a~~a~~----~l------~~~~~~~---------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~ 179 (225)
T 2yhc_A 121 KLVRG--YPNSQYTTDATK----RL------VFLKDRL---------AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPD 179 (225)
T ss_dssp HHHTT--CTTCTTHHHHHH----HH------HHHHHHH---------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHH--CcCChhHHHHHH----HH------HHHHHHH---------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcC
Confidence 99875 34432 211111 00 0111111 112234567788999999999999987 33444
Q ss_pred H----hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 037414 374 E----GLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPG 409 (577)
Q Consensus 374 ~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 409 (577)
. ..+..+..++.+.|+.++|...++.+....|++..
T Consensus 180 ~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 180 TQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred CCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 2 46888889999999999999999999988887653
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.65 E-value=3.9e-07 Score=82.72 Aligned_cols=73 Identities=18% Similarity=0.169 Sum_probs=36.8
Q ss_pred HHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHH
Q 037414 199 LVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ---KNVISWS 275 (577)
Q Consensus 199 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~ 275 (577)
+..+|.+.|++++|...|++..+.++ .+...+..+..+|...|++++|...|++..+ .+...|.
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p-------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~ 126 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAP-------------NNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANI 126 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCC-------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 55555556666666665555433211 1344455555555555555555555555442 2334455
Q ss_pred HHHHHHHHc
Q 037414 276 AMIAAYGYH 284 (577)
Q Consensus 276 ~li~~~~~~ 284 (577)
.+...|...
T Consensus 127 ~lg~~~~~~ 135 (208)
T 3urz_A 127 FLGNYYYLT 135 (208)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555544433
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.64 E-value=7.2e-07 Score=78.47 Aligned_cols=125 Identities=15% Similarity=0.099 Sum_probs=78.1
Q ss_pred cchhhHHHHHHHHHhcCCHHHHHHHHHhccC--CChhhHHHHHHH-HHHcCChHHHHHHHHHhhhCCCCC-CHHHHHHHH
Q 037414 238 LDVILGTAVIDMYAKCGSIDSAREIFDRMRQ--KNVISWSAMIAA-YGYHGQGKKALDLFPMMLSSRVLP-NRITFVSLL 313 (577)
Q Consensus 238 ~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~-~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll 313 (577)
.+...+..+...|.+.|++++|...|++..+ |+...+...... +...+...+|+..|++..+. .| +...+..+.
T Consensus 38 ~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~--~P~~~~~~~~la 115 (176)
T 2r5s_A 38 SRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAA--NPDNFELACELA 115 (176)
T ss_dssp TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--STTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhcccchHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 3577899999999999999999999999875 433322222111 12222333456666666653 23 355566666
Q ss_pred HHHhccCCHHHHHHHHHHhhHhcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHh
Q 037414 314 YACSHTGLVEEGLRLFSSMWDDFAVRPD---VKHYTCMVDLLGRAGRLDEALKLIES 367 (577)
Q Consensus 314 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~ 367 (577)
.++...|++++|...|+.+++ ..|+ ...+..+...|...|+.++|...|++
T Consensus 116 ~~~~~~g~~~~A~~~~~~~l~---~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~ 169 (176)
T 2r5s_A 116 VQYNQVGRDEEALELLWNILK---VNLGAQDGEVKKTFMDILSALGQGNAIASKYRR 169 (176)
T ss_dssp HHHHHTTCHHHHHHHHHHHHT---TCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHH---hCcccChHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 666677777777777776653 2332 34566666666666666666666553
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=7.9e-08 Score=82.26 Aligned_cols=122 Identities=16% Similarity=0.041 Sum_probs=100.4
Q ss_pred HHHHHhccCCHHHHHHHHHHhhHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcC
Q 037414 312 LLYACSHTGLVEEGLRLFSSMWDDFAVRPD-VKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHK 388 (577)
Q Consensus 312 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g 388 (577)
|-..+...|++++|...+.... ...|+ ...+..+...|.+.|++++|.+.|++. .+.| +..+|..+...+...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 3445667789999999998875 33443 445567888999999999999999987 4456 5679999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHH-HHHHhh
Q 037414 389 NVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKI-RDLMTR 436 (577)
Q Consensus 389 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~ 436 (577)
++++|+..++++++.+|.++.+|..+..+|.+.|++++|.+. +++..+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999887765 466654
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.61 E-value=2.9e-07 Score=78.61 Aligned_cols=102 Identities=10% Similarity=0.014 Sum_probs=87.6
Q ss_pred CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHH
Q 037414 337 AVRPD-VKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVL 413 (577)
Q Consensus 337 ~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 413 (577)
.+.|+ ...+..+...|.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..|+++++.+|+++..|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 34453 456777778888999999999999887 4455 56789999999999999999999999999999999999999
Q ss_pred HHHHHhccCChhHHHHHHHHHhhCC
Q 037414 414 LSNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 414 l~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
+..+|...|++++|.+.+++..+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999887643
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.60 E-value=7.9e-07 Score=80.64 Aligned_cols=160 Identities=10% Similarity=0.014 Sum_probs=114.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccC--C-ChhhHHH----------------HHHHHHHcCChHHHHHHHHHhhhCCCC
Q 037414 243 GTAVIDMYAKCGSIDSAREIFDRMRQ--K-NVISWSA----------------MIAAYGYHGQGKKALDLFPMMLSSRVL 303 (577)
Q Consensus 243 ~~~Li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~----------------li~~~~~~g~~~~A~~l~~~m~~~g~~ 303 (577)
.......+.+.|++++|...|++..+ | +...|.. +...|.+.|++++|+..|++..+.. +
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p 85 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-P 85 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-C
Confidence 33456677889999999999998865 2 2345656 7888888999999999999888753 3
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-CHHHHHHHHHHHHHcCC--HHHHHHHHHhCCCCCCHh--HHH
Q 037414 304 PNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP-DVKHYTCMVDLLGRAGR--LDEALKLIESMSVEKDEG--LWG 378 (577)
Q Consensus 304 p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~p~~~--~~~ 378 (577)
-+...+..+...+...|++++|...|+..++. .| +...+..+...|...|+ .+.+...++... .|+.. .+.
T Consensus 86 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~ 161 (208)
T 3urz_A 86 NNVDCLEACAEMQVCRGQEKDALRMYEKILQL---EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS-SPTKMQYARY 161 (208)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-CCCchhHHHH
Confidence 35667788888888899999999999988753 44 46677777777765543 445566666653 34433 344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 037414 379 ALLGACRIHKNVDLAEMAAKSLLERQPQN 407 (577)
Q Consensus 379 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 407 (577)
....++...|++++|+..++++++..|++
T Consensus 162 ~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 162 RDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 44555667788899999999999888864
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.56 E-value=2.5e-06 Score=77.23 Aligned_cols=145 Identities=7% Similarity=-0.082 Sum_probs=87.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCH
Q 037414 243 GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322 (577)
Q Consensus 243 ~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 322 (577)
+..+...|...|++++|...|++..+++...|..+...|...|++++|+..|++..... +.+...+..+..++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 44556666677777777777777766666667777777777777777777777666542 23445566666666666666
Q ss_pred HHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037414 323 EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKD-EGLWGALLGACRIHKNVDLAEMAAKSLL 401 (577)
Q Consensus 323 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 401 (577)
++|.+.|+..++...-.+... +...| +...|+ ...|..+...+...|++++|...+++++
T Consensus 88 ~~A~~~~~~al~~~~~~~~~~--------~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 88 DLAIKDLKEALIQLRGNQLID--------YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp HHHHHHHHHHHHTTTTCSEEE--------CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCccHHH--------HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 666666666654211111000 00000 012222 2466677777778888888888888888
Q ss_pred hcCCCC
Q 037414 402 ERQPQN 407 (577)
Q Consensus 402 ~~~p~~ 407 (577)
+..|.+
T Consensus 149 ~~~p~~ 154 (213)
T 1hh8_A 149 SMKSEP 154 (213)
T ss_dssp TTCCSG
T ss_pred HcCccc
Confidence 877765
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.55 E-value=2e-06 Score=77.87 Aligned_cols=125 Identities=15% Similarity=0.048 Sum_probs=97.3
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHh
Q 037414 309 FVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRI 386 (577)
Q Consensus 309 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~ 386 (577)
+..+...+...|++++|...|+..+ .|+...+..+...|.+.|++++|.+.+++. ...| +...|..+...+..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 3344555666777777777776652 456667777777777788888888777766 2233 55678888888889
Q ss_pred cCCHHHHHHHHHHHHhcCCCCc----------------hhHHHHHHHHhccCChhHHHHHHHHHhhCC
Q 037414 387 HKNVDLAEMAAKSLLERQPQNP----------------GHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 387 ~g~~~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
.|++++|...++++++..|.+. ..+..+..+|...|++++|.+.++...+..
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 9999999999999998888776 889999999999999999999999988654
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.52 E-value=6.5e-07 Score=73.90 Aligned_cols=93 Identities=6% Similarity=0.028 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhcc
Q 037414 344 HYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANA 421 (577)
Q Consensus 344 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 421 (577)
.+.-....|.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++.+|+++.+|..++.+|...
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 94 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAM 94 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC
Confidence 3444445555555555555555554 2223 3445555555555566666666666666666666555566666666666
Q ss_pred CChhHHHHHHHHHhh
Q 037414 422 GRWQDVAKIRDLMTR 436 (577)
Q Consensus 422 g~~~~A~~~~~~m~~ 436 (577)
|++++|.+.+++..+
T Consensus 95 ~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 95 REWSKAQRAYEDALQ 109 (126)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 666666666555543
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.52 E-value=3.5e-06 Score=76.61 Aligned_cols=170 Identities=11% Similarity=0.025 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCC----CHHHHHHHH
Q 037414 141 NCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCK----VIDDARQLF 216 (577)
Q Consensus 141 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~~ 216 (577)
+|++.|++..+.| +...+..+-..+...+++++|...+++..+.| +...+..|..+|.. + ++++|.+.|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3445555555442 44445555555555556666666665555543 33444555555555 4 556666655
Q ss_pred hhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHh----cCCHHHHHHHHHhccCCC-----hhhHHHHHHHHHH----
Q 037414 217 DQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAK----CGSIDSAREIFDRMRQKN-----VISWSAMIAAYGY---- 283 (577)
Q Consensus 217 ~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~----~g~~~~A~~~~~~~~~~~-----~~~~~~li~~~~~---- 283 (577)
++..+++ +...+..|..+|.. .+++++|..+|++..+.+ +..+..|...|..
T Consensus 77 ~~A~~~g---------------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~ 141 (212)
T 3rjv_A 77 EKAVEAG---------------SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHG 141 (212)
T ss_dssp HHHHHTT---------------CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSS
T ss_pred HHHHHCC---------------CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCC
Confidence 5543221 23344445555554 556666666666555422 3555556566655
Q ss_pred cCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcc-C-----CHHHHHHHHHHhhH
Q 037414 284 HGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHT-G-----LVEEGLRLFSSMWD 334 (577)
Q Consensus 284 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~-g-----~~~~a~~~~~~m~~ 334 (577)
.+++++|...|++..+.+ .+...+..|...|... | +.++|...|+...+
T Consensus 142 ~~d~~~A~~~~~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~ 196 (212)
T 3rjv_A 142 PEDDVKASEYFKGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCL 196 (212)
T ss_dssp SCCHHHHHHHHHHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence 556666666666665541 1222334444444322 2 56666666666543
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.50 E-value=4.4e-05 Score=73.06 Aligned_cols=227 Identities=8% Similarity=0.016 Sum_probs=151.7
Q ss_pred CChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCC--CHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHH
Q 037414 172 KDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCK--VIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDM 249 (577)
Q Consensus 172 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~ 249 (577)
...++|.+..+.++..+ |-+..+|+.--.++...| +++++++.++.+...++- +..+|+--...
T Consensus 47 e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-------------~y~aW~~R~~i 112 (306)
T 3dra_A 47 EYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-------------NYQIWNYRQLI 112 (306)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-------------CCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-------------cHHHHHHHHHH
Confidence 33456777777777664 445566676666666677 788888877776543222 12223222222
Q ss_pred H----Hhc---CCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChH--HHHHHHHHhhhCCCCCCHHHHHHHHHHHh
Q 037414 250 Y----AKC---GSIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGK--KALDLFPMMLSSRVLPNRITFVSLLYACS 317 (577)
Q Consensus 250 ~----~~~---g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 317 (577)
+ .+. +++++++.+++++.+ +|...|+--...+.+.|.++ ++++.++++.+... -|...++.-...+.
T Consensus 113 L~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~ 191 (306)
T 3dra_A 113 IGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLF 191 (306)
T ss_dssp HHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 2 334 788999999998875 56778888778888888888 99999999988643 36666665555556
Q ss_pred ccCC------HHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHhC-CC----CCCHhHHHHHHHHHH
Q 037414 318 HTGL------VEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDE-ALKLIESM-SV----EKDEGLWGALLGACR 385 (577)
Q Consensus 318 ~~g~------~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m-~~----~p~~~~~~~ll~~~~ 385 (577)
+.+. ++++.+.++.+++. -+-+...|+-+-..+.+.|+..+ +.++.++. .. ..+...+..+...+.
T Consensus 192 ~l~~~~~~~~~~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~ 269 (306)
T 3dra_A 192 SKKHLATDNTIDEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYT 269 (306)
T ss_dssp SSGGGCCHHHHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHH
T ss_pred hccccchhhhHHHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHH
Confidence 6665 78888888877753 23456777777777777777433 45566655 21 235567777777777
Q ss_pred hcCCHHHHHHHHHHHHh-cCCCCchhHHHHH
Q 037414 386 IHKNVDLAEMAAKSLLE-RQPQNPGHYVLLS 415 (577)
Q Consensus 386 ~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~ 415 (577)
+.|+.++|.++++.+.+ .+|.....|...+
T Consensus 270 ~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 270 QQKKYNESRTVYDLLKSKYNPIRSNFWDYQI 300 (306)
T ss_dssp HTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 88888888888888876 5777666655443
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.48 E-value=2.5e-06 Score=70.30 Aligned_cols=114 Identities=11% Similarity=0.014 Sum_probs=91.6
Q ss_pred CCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHH
Q 037414 302 VLPNR-ITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWG 378 (577)
Q Consensus 302 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~ 378 (577)
+.|+. ..+......+.+.|++++|.+.|++.++. -+.+...|..+..+|.+.|++++|++.|++. .+.| +...|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence 34443 35666777888889999999999888753 2335778888888999999999999998887 3444 566899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 037414 379 ALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNV 417 (577)
Q Consensus 379 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 417 (577)
.+..++...|++++|+..++++++.+|+++.++..|.++
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 999999999999999999999999999999887777654
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.47 E-value=3.5e-06 Score=68.42 Aligned_cols=115 Identities=17% Similarity=0.195 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHhHHHHHHHH
Q 037414 306 RITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVE-KDEGLWGALLGA 383 (577)
Q Consensus 306 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~ 383 (577)
...+..+...+...|++++|.++++.+.+. .+.+...+..+...|.+.|++++|..+++++ ... .+..+|..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 345556666777777777777777777643 1234566777777778888888888877776 222 356678888888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccC
Q 037414 384 CRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAG 422 (577)
Q Consensus 384 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 422 (577)
+...|++++|...++++.+..|.++..+..+..++...|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 888899999999999998888888888877777765543
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.47 E-value=3.9e-06 Score=72.34 Aligned_cols=127 Identities=7% Similarity=-0.034 Sum_probs=96.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHH
Q 037414 308 TFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACR 385 (577)
Q Consensus 308 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~ 385 (577)
.+..+...+...|++++|...|+..++. .+.+...+..+...|...|++++|.+.+++. ...| +...|..+...+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4555666667777788888777777643 2234667777778888888888888888776 2234 5668888888899
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCchhHHHHHHH--HhccCChhHHHHHHHHHhh
Q 037414 386 IHKNVDLAEMAAKSLLERQPQNPGHYVLLSNV--YANAGRWQDVAKIRDLMTR 436 (577)
Q Consensus 386 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~m~~ 436 (577)
..|++++|...++++++..|.++..+..+..+ +...|++++|.+.+....+
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999999999999988777544444 7888999999999876643
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=7.4e-07 Score=75.93 Aligned_cols=100 Identities=10% Similarity=0.065 Sum_probs=83.9
Q ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 037414 338 VRP-DVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLL 414 (577)
Q Consensus 338 ~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 414 (577)
+.| +...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++.+|+++..+..+
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 95 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHA 95 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHH
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHH
Confidence 444 3456667778888999999999999887 3344 667888888889999999999999999999999999999999
Q ss_pred HHHHhccCChhHHHHHHHHHhhC
Q 037414 415 SNVYANAGRWQDVAKIRDLMTRR 437 (577)
Q Consensus 415 ~~~~~~~g~~~~A~~~~~~m~~~ 437 (577)
..+|...|++++|.+.++...+.
T Consensus 96 g~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 96 AECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999887654
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.45 E-value=9.5e-06 Score=77.78 Aligned_cols=161 Identities=8% Similarity=-0.031 Sum_probs=118.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHhhhCC-CCCCHH----HHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC----HHHHH
Q 037414 276 AMIAAYGYHGQGKKALDLFPMMLSSR-VLPNRI----TFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD----VKHYT 346 (577)
Q Consensus 276 ~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~ 346 (577)
..+..+...|++++|..++++..+.. ..|+.. .+..+...+...|++++|...++.+++...-.++ ...++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34667788899999999998887642 223321 2334666677778999999999988753222222 33688
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-----CC---CCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------chhH
Q 037414 347 CMVDLLGRAGRLDEALKLIESM-----SV---EKD-EGLWGALLGACRIHKNVDLAEMAAKSLLERQPQN------PGHY 411 (577)
Q Consensus 347 ~li~~~~~~g~~~~A~~~~~~m-----~~---~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~ 411 (577)
.+...|...|++++|...|++. .. .+. ..++..+...|...|++++|...++++++..+.. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 8888999999999998888776 11 111 2377888899999999999999999998764322 5688
Q ss_pred HHHHHHHhccCC-hhHHHHHHHHHhh
Q 037414 412 VLLSNVYANAGR-WQDVAKIRDLMTR 436 (577)
Q Consensus 412 ~~l~~~~~~~g~-~~~A~~~~~~m~~ 436 (577)
..+..+|.+.|+ +++|.+.+++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 999999999995 6999998887653
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.44 E-value=5.8e-07 Score=85.84 Aligned_cols=192 Identities=9% Similarity=-0.039 Sum_probs=136.2
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 037414 239 DVILGTAVIDMYAKCGSIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYA 315 (577)
Q Consensus 239 ~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 315 (577)
+...+..+...|.+.|++++|...|++..+ .+...|..+...|.+.|++++|+..+++..+.. +-+...+..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 456778889999999999999999998764 467789999999999999999999999998753 3356788888999
Q ss_pred HhccCCHHHHHHHHHHhhHhcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHH
Q 037414 316 CSHTGLVEEGLRLFSSMWDDFAVRPDV-KHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAE 394 (577)
Q Consensus 316 ~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~ 394 (577)
+...|++++|...|+..++. .|+. ..+...+....+..+...... .......++..... .+..+. .|+.++|.
T Consensus 82 ~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~-~l~~l~-~~~~~~A~ 155 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHS-YLTRLI-AAEREREL 155 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHH-HHHHHH-HHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHH-HHHHHH-HHHHHHHH
Confidence 99999999999999988753 2221 011111211111111111111 12222233333333 333333 68999999
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHhcc-CChhHHHHHHHHHhhC
Q 037414 395 MAAKSLLERQPQNPGHYVLLSNVYANA-GRWQDVAKIRDLMTRR 437 (577)
Q Consensus 395 ~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~ 437 (577)
+.++++++.+|++......+...+.+. +++++|.++|....+.
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999999998877777777777666 7789999999887654
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.44 E-value=1.1e-05 Score=77.32 Aligned_cols=214 Identities=13% Similarity=0.140 Sum_probs=162.0
Q ss_pred CCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcC--CHHHHHHHHHhccC---CChhhHHHHHHHH
Q 037414 207 KVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCG--SIDSAREIFDRMRQ---KNVISWSAMIAAY 281 (577)
Q Consensus 207 g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~ 281 (577)
...++|+++++.+...++. +..+|+.--..+...| +++++++.++.+.. .+...|+.--..+
T Consensus 47 e~s~~aL~~t~~~L~~nP~-------------~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL 113 (306)
T 3dra_A 47 EYSERALHITELGINELAS-------------HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLII 113 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTT-------------CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCcH-------------HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHH
Confidence 3346788888777653322 3446666677777888 99999999999875 4556777655555
Q ss_pred ----HHc---CChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHH--HHHHHHHHhhHhcCCCCCHHHHHHHHHHH
Q 037414 282 ----GYH---GQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVE--EGLRLFSSMWDDFAVRPDVKHYTCMVDLL 352 (577)
Q Consensus 282 ----~~~---g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~--~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 352 (577)
... +++++++++++++.+.. +-|...+..-.-.+.+.|.++ ++.+.++.+++. -.-+...|+.-...+
T Consensus 114 ~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll 190 (306)
T 3dra_A 114 GQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLL 190 (306)
T ss_dssp HHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 555 78999999999999863 446677776666677778877 999999999864 234566676666666
Q ss_pred HHcCC------HHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCH-HHHHHHHHHHHhcC---CCCchhHHHHHHHHhc
Q 037414 353 GRAGR------LDEALKLIESM-SVEK-DEGLWGALLGACRIHKNV-DLAEMAAKSLLERQ---PQNPGHYVLLSNVYAN 420 (577)
Q Consensus 353 ~~~g~------~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~ 420 (577)
.+.|+ ++++++.++++ ...| |...|+-+-..+...|+. +....+.+++.+.+ |.++.++..++.+|.+
T Consensus 191 ~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~ 270 (306)
T 3dra_A 191 FSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQ 270 (306)
T ss_dssp HSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHH
T ss_pred HhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHc
Confidence 66666 88999988876 3344 778999888888888874 44566777777665 8888899999999999
Q ss_pred cCChhHHHHHHHHHhh
Q 037414 421 AGRWQDVAKIRDLMTR 436 (577)
Q Consensus 421 ~g~~~~A~~~~~~m~~ 436 (577)
.|+.++|.++++.+.+
T Consensus 271 ~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 271 QKKYNESRTVYDLLKS 286 (306)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHh
Confidence 9999999999999875
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.42 E-value=4.8e-06 Score=68.23 Aligned_cols=117 Identities=11% Similarity=-0.015 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHH
Q 037414 306 RITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGA 383 (577)
Q Consensus 306 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~ 383 (577)
...+..+...+...|++++|...++...+. .+.+...+..+...|...|++++|.+.+++. ...| +...|..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 445666667777788888888888877653 2235667777788888888888888888776 2234 46678888888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCCh
Q 037414 384 CRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRW 424 (577)
Q Consensus 384 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 424 (577)
+...|++++|...++++.+..|.++..+..+..++...|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999888888888888887765
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.42 E-value=7.5e-06 Score=78.51 Aligned_cols=163 Identities=7% Similarity=-0.054 Sum_probs=111.8
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCC-H----HHHHHHHHHHhccCCHHHHHHHHHHhhHhcC--CCCC--HH
Q 037414 273 SWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPN-R----ITFVSLLYACSHTGLVEEGLRLFSSMWDDFA--VRPD--VK 343 (577)
Q Consensus 273 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--~~p~--~~ 343 (577)
.+...+..+...|++++|.+.+.+..+.....+ . ..+..+...+...|++++|...+...++... ..+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344456667777888888887777665432211 1 1233345556777888888888887764211 1111 44
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC-----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------Cc
Q 037414 344 HYTCMVDLLGRAGRLDEALKLIESM----SVEKD-----EGLWGALLGACRIHKNVDLAEMAAKSLLERQPQ------NP 408 (577)
Q Consensus 344 ~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~ 408 (577)
+|+.+...|...|++++|.+.|++. ...|+ ..++..+...|...|++++|...++++++..+. ..
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7778888888888888888888765 11222 247788888899999999999999998875422 14
Q ss_pred hhHHHHHHHHhccCChhHH-HHHHHHHh
Q 037414 409 GHYVLLSNVYANAGRWQDV-AKIRDLMT 435 (577)
Q Consensus 409 ~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 435 (577)
.+|..+..+|.+.|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 6788899999999999999 77676554
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.41 E-value=7.5e-06 Score=76.69 Aligned_cols=196 Identities=10% Similarity=-0.065 Sum_probs=97.1
Q ss_pred cCCChHHHHHHHHHHHHcCCCCcHHHHHHH-------HHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCC-------
Q 037414 170 DRKDIVMGRLIHDIVLKSGLDIDQFVCAAL-------VDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANK------- 235 (577)
Q Consensus 170 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g------- 235 (577)
..++.+.|.+.|.++.+.. +.....|..+ ...+.+.++..++...+++-.+..+....+.+.-.|
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 4677777888887777764 3445566655 344444444555555555544433322222111001
Q ss_pred -CCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC--CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCC--HHHHH
Q 037414 236 -FLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ--KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPN--RITFV 310 (577)
Q Consensus 236 -~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~ 310 (577)
+..-..+.-.+...+...|++++|.++|+.+.. |+......+...+.+.+++++|+..|+...... .|. ...+.
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~ 175 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGV 175 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHH
Confidence 011133445566667777777777777777753 322244444455666666666666666443321 111 12344
Q ss_pred HHHHHHhccCCHHHHHHHHHHhhHhcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 037414 311 SLLYACSHTGLVEEGLRLFSSMWDDFAVRPD--VKHYTCMVDLLGRAGRLDEALKLIESM 368 (577)
Q Consensus 311 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m 368 (577)
.+-.++...|++++|...|++.... ...|. .........++.+.|+.++|..+|+++
T Consensus 176 ~LG~al~~LG~~~eAl~~l~~a~~g-~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a 234 (282)
T 4f3v_A 176 AHGVAAANLALFTEAERRLTEANDS-PAGEACARAIAWYLAMARRSQGNESAAVALLEWL 234 (282)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTS-TTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhcC-CCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4455555555555555555555321 11132 122333333444444444444444444
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.41 E-value=4.9e-06 Score=70.11 Aligned_cols=96 Identities=10% Similarity=-0.011 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHh
Q 037414 342 VKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYA 419 (577)
Q Consensus 342 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 419 (577)
...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++.+|.++..+..+..+|.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 345556667788889999999988887 3344 56688888888999999999999999999999999999999999999
Q ss_pred ccCChhHHHHHHHHHhhC
Q 037414 420 NAGRWQDVAKIRDLMTRR 437 (577)
Q Consensus 420 ~~g~~~~A~~~~~~m~~~ 437 (577)
..|++++|.+.++...+.
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999887654
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.40 E-value=1.5e-06 Score=84.16 Aligned_cols=171 Identities=13% Similarity=0.039 Sum_probs=126.0
Q ss_pred cCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHhhhC----CCCCC-HHHHHHHHHHHhccCCHHHHHH
Q 037414 253 CGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSS----RVLPN-RITFVSLLYACSHTGLVEEGLR 327 (577)
Q Consensus 253 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~ 327 (577)
.+++++|...|++. ...|...|++++|...|.+..+. |-.+. ..+|..+...|...|++++|..
T Consensus 29 ~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~ 97 (307)
T 2ifu_A 29 KPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQ 97 (307)
T ss_dssp SCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHH
T ss_pred CCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 35666666665543 45667778888888777776543 21111 3467778888999999999999
Q ss_pred HHHHhhHhcCC--CC--CHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC---C----HhHHHHHHHHHHhcCCHHHHHH
Q 037414 328 LFSSMWDDFAV--RP--DVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK---D----EGLWGALLGACRIHKNVDLAEM 395 (577)
Q Consensus 328 ~~~~m~~~~~~--~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~----~~~~~~ll~~~~~~g~~~~a~~ 395 (577)
.|+..++-+.- .+ ...++..+...|.+ |++++|.+.|++. .+.| + ..++..+...+...|++++|+.
T Consensus 98 ~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 176 (307)
T 2ifu_A 98 YIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAA 176 (307)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99887653211 11 14577788888988 9999999999876 1111 1 3478888899999999999999
Q ss_pred HHHHHHhcCCCCc------hhHHHHHHHHhccCChhHHHHHHHHHh
Q 037414 396 AAKSLLERQPQNP------GHYVLLSNVYANAGRWQDVAKIRDLMT 435 (577)
Q Consensus 396 ~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~m~ 435 (577)
.++++++..|.+. ..+..++.++...|++++|...+++..
T Consensus 177 ~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 177 SLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 9999998765432 366777888889999999999999887
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.40 E-value=1.3e-06 Score=85.68 Aligned_cols=125 Identities=11% Similarity=-0.003 Sum_probs=96.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHhC-CC
Q 037414 308 TFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD----------------VKHYTCMVDLLGRAGRLDEALKLIESM-SV 370 (577)
Q Consensus 308 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----------------~~~~~~li~~~~~~g~~~~A~~~~~~m-~~ 370 (577)
.+..+...+...|++++|...|+..++. .|+ ...|..+...|.+.|++++|.+.+++. .+
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSW---LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH---TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH---hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3444444555555555555555555432 122 467888888999999999999999887 33
Q ss_pred CC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHH-HHHHHHHh
Q 037414 371 EK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDV-AKIRDLMT 435 (577)
Q Consensus 371 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 435 (577)
.| +...|..+..++...|++++|+..++++++.+|.++.++..+..++...|++++| ...++.|.
T Consensus 226 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 226 DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 5678999999999999999999999999999999999999999999999999998 44666664
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.39 E-value=1.9e-05 Score=75.69 Aligned_cols=207 Identities=10% Similarity=0.055 Sum_probs=131.9
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHhcCCCCCcch---HHHHHHHHHhCCChhHHHHHHHHHHHCCC-C
Q 037414 80 HAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVS---WSVMVGGFSKVADFINCFETFREFIRCGM-Q 155 (577)
Q Consensus 80 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~ 155 (577)
+..+.+....|+..+...+...+.-. + ..+|..-...+... +...+..+...|++++|.+++++..+... .
T Consensus 34 ~s~~e~g~~~~~~~~l~~i~~~l~~~--~---~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~ 108 (293)
T 3u3w_A 34 VSRIESGAVYPSMDILQGIAAKLQIP--I---IHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYH 108 (293)
T ss_dssp HHHHHTTSCCCCHHHHHHHHHHHTCC--T---HHHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHCCCCCCCHHHHHHHHHHhCcC--H---HHHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCC
Confidence 34443333467777777776666422 1 12333333333333 33346778899999999999999887421 2
Q ss_pred CCcc----hHHHHHHHHhcCCChHHHHHHHHHHHHcCCC-Cc----HHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhH
Q 037414 156 LDSY----TLPFVIRACRDRKDIVMGRLIHDIVLKSGLD-ID----QFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVT 226 (577)
Q Consensus 156 p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 226 (577)
|+.. .+..+...+...+++++|...+.++++.... ++ ..+++.+...|...|++++|...|++..+.-.
T Consensus 109 ~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~-- 186 (293)
T 3u3w_A 109 PEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLE-- 186 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--
T ss_pred hHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--
Confidence 2211 2234555677778999999999999884322 22 34789999999999999999999988752000
Q ss_pred HHHHHhcCCCCc-chhhHHHHHHHHHhcCCHHHHHHHHHhccC-----CC----hhhHHHHHHHHHHcCC-hHHHHHHHH
Q 037414 227 WTVMIGANKFLL-DVILGTAVIDMYAKCGSIDSAREIFDRMRQ-----KN----VISWSAMIAAYGYHGQ-GKKALDLFP 295 (577)
Q Consensus 227 ~~~~i~~~g~~~-~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~-~~~A~~l~~ 295 (577)
.. .+..+ ...++..+...|.+.|++++|...+++..+ .+ ...|..+...|.+.|+ +++|.+.|+
T Consensus 187 --~~---~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~ 261 (293)
T 3u3w_A 187 --AL---HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYK 261 (293)
T ss_dssp --HS---SCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred --hc---ccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHH
Confidence 00 00011 234677888888888888888888877653 11 3467777777777774 477777776
Q ss_pred Hhh
Q 037414 296 MML 298 (577)
Q Consensus 296 ~m~ 298 (577)
+..
T Consensus 262 ~Al 264 (293)
T 3u3w_A 262 KAS 264 (293)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.39 E-value=4e-06 Score=69.10 Aligned_cols=116 Identities=12% Similarity=0.007 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHH
Q 037414 306 RITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGA 383 (577)
Q Consensus 306 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~ 383 (577)
...+..+...+...|++++|...++..++. .+.+...+..+...|...|++++|.+.+++. ...| +...|..+...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 344555555555666666666666655421 1123455555666666666666666666655 2223 45577777777
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCC
Q 037414 384 CRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGR 423 (577)
Q Consensus 384 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 423 (577)
+...|++++|...++++++..|.+...+..+..++...|+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 8888888888888888888888877777777777766553
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.33 E-value=9.9e-06 Score=75.88 Aligned_cols=182 Identities=8% Similarity=-0.023 Sum_probs=139.1
Q ss_pred hcCCHHHHHHHHHhccC--C-ChhhHHHH-------HHHHHHcCChHHHHHHHHHhhhCCCCCC----------------
Q 037414 252 KCGSIDSAREIFDRMRQ--K-NVISWSAM-------IAAYGYHGQGKKALDLFPMMLSSRVLPN---------------- 305 (577)
Q Consensus 252 ~~g~~~~A~~~~~~~~~--~-~~~~~~~l-------i~~~~~~g~~~~A~~l~~~m~~~g~~p~---------------- 305 (577)
..++.+.|.+.|.+..+ | ....|+.+ ...+...++..+++..++.-.. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 58999999999999875 3 35678877 5666666667777777666554 2221
Q ss_pred ------HHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCH----h
Q 037414 306 ------RITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDE----G 375 (577)
Q Consensus 306 ------~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~----~ 375 (577)
......+...+...|++++|.++|+.+.. ..|+......+...+.+.|++++|+..|+.....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 12233466778889999999999998863 3465445556666889999999999999987434433 3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CC-CchhHHHHHHHHhccCChhHHHHHHHHHhhCC
Q 037414 376 LWGALLGACRIHKNVDLAEMAAKSLLERQ--PQ-NPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 376 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
.+..+..++...|++++|+..+++..... |. .+........++.+.|+.++|...|+++....
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 67778888999999999999999998543 44 44577889999999999999999999998644
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.33 E-value=9.6e-06 Score=77.73 Aligned_cols=162 Identities=12% Similarity=-0.040 Sum_probs=121.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhccC--CC-h------hhHHHHHHHHHHcCChHHHHHHHHHhhhCCC---CCC--HH
Q 037414 242 LGTAVIDMYAKCGSIDSAREIFDRMRQ--KN-V------ISWSAMIAAYGYHGQGKKALDLFPMMLSSRV---LPN--RI 307 (577)
Q Consensus 242 ~~~~Li~~~~~~g~~~~A~~~~~~~~~--~~-~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~p~--~~ 307 (577)
.+...+..+...|++++|.+.+++..+ +. . ..+..+...+...|++++|+..+++...... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 444567889999999999999986543 11 1 2244466677888999999999999875421 222 44
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCC-H
Q 037414 308 TFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD-----VKHYTCMVDLLGRAGRLDEALKLIESM-------SVEKD-E 374 (577)
Q Consensus 308 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~-~ 374 (577)
+++.+...|...|++++|..++++.++.....|+ ..++..+...|.+.|++++|.+.+++. +.... .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888999999999999999999998732211222 257888899999999999999999876 11111 4
Q ss_pred hHHHHHHHHHHhcCCHHHH-HHHHHHHHhc
Q 037414 375 GLWGALLGACRIHKNVDLA-EMAAKSLLER 403 (577)
Q Consensus 375 ~~~~~ll~~~~~~g~~~~a-~~~~~~~~~~ 403 (577)
.+|..+...+...|+.++| ...++++++.
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 5788888999999999999 7778887654
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.32 E-value=2.8e-06 Score=74.59 Aligned_cols=120 Identities=8% Similarity=0.045 Sum_probs=86.3
Q ss_pred hccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHH-HHhcCCH--H
Q 037414 317 SHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGA-CRIHKNV--D 391 (577)
Q Consensus 317 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~-~~~~g~~--~ 391 (577)
...|++++|...++..++. -+.+...+..+...|...|++++|.+.|++. ...| +...|..+... +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 3456777777777777643 2235667777777888888888888888776 2233 55567777777 6677887 8
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCC
Q 037414 392 LAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 392 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
+|...++++++.+|.++..+..++.+|...|++++|...+++..+..
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 88888888888888888888888888888888888888888877654
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.31 E-value=5.9e-06 Score=73.95 Aligned_cols=152 Identities=13% Similarity=0.008 Sum_probs=77.4
Q ss_pred HhcCCHHHHHH---HHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHhhhC----CCCC-CHHHHHHHHHHHhccCCH
Q 037414 251 AKCGSIDSARE---IFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSS----RVLP-NRITFVSLLYACSHTGLV 322 (577)
Q Consensus 251 ~~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~ 322 (577)
...|++++|.+ .+..-.......+..+...+...|++++|...+++.... |..| ...++..+...+...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 34677777777 443322234456677777777777777777777766541 1122 223455555666666777
Q ss_pred HHHHHHHHHhhHhcCCCC-C----HHHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCCH----hHHHHHHHHHHhcCC
Q 037414 323 EEGLRLFSSMWDDFAVRP-D----VKHYTCMVDLLGRAGRLDEALKLIESM----SVEKDE----GLWGALLGACRIHKN 389 (577)
Q Consensus 323 ~~a~~~~~~m~~~~~~~p-~----~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~----~~~~~ll~~~~~~g~ 389 (577)
++|...+++.++...-.+ + ...+..+...+...|++++|.+.+++. ...++. .++..+...+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 766666665543211111 1 233445555555566666665555543 001111 123444444555555
Q ss_pred HHHHHHHHHHHHh
Q 037414 390 VDLAEMAAKSLLE 402 (577)
Q Consensus 390 ~~~a~~~~~~~~~ 402 (577)
+++|...++++++
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.29 E-value=5.5e-06 Score=65.80 Aligned_cols=98 Identities=12% Similarity=0.066 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CchhHHHHHHH
Q 037414 342 VKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQ--NPGHYVLLSNV 417 (577)
Q Consensus 342 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~ 417 (577)
...+..+...+.+.|++++|...+++. ...| +...|..+...+...|++++|...++++++..|. +...+..+..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 445566777788888888888888776 2233 5667888888889999999999999999999998 88899999999
Q ss_pred Hhcc-CChhHHHHHHHHHhhCCC
Q 037414 418 YANA-GRWQDVAKIRDLMTRRRL 439 (577)
Q Consensus 418 ~~~~-g~~~~A~~~~~~m~~~g~ 439 (577)
|... |++++|.+.++...+...
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHhCCHHHHHHHHHHHhhccc
Confidence 9999 999999999988876543
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.29 E-value=6.6e-06 Score=67.49 Aligned_cols=96 Identities=10% Similarity=0.025 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHh
Q 037414 342 VKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYA 419 (577)
Q Consensus 342 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 419 (577)
...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++.+|.++..|..+..+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 345566667778888888888888776 3334 56688888888888899999999999999999988888888999999
Q ss_pred ccCChhHHHHHHHHHhhC
Q 037414 420 NAGRWQDVAKIRDLMTRR 437 (577)
Q Consensus 420 ~~g~~~~A~~~~~~m~~~ 437 (577)
..|++++|.+.+++..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 999999999888877654
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.28 E-value=1e-05 Score=69.58 Aligned_cols=125 Identities=14% Similarity=0.023 Sum_probs=52.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHH
Q 037414 274 WSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLG 353 (577)
Q Consensus 274 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~ 353 (577)
|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...++..++. .+.+...+..+...|.
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHH
Confidence 3333444444444444444444443321 112334444444444444444444444444332 1122344444444555
Q ss_pred HcCCHHHHHHHHHhC-CCCC-CHhHHHH--HHHHHHhcCCHHHHHHHHHHHH
Q 037414 354 RAGRLDEALKLIESM-SVEK-DEGLWGA--LLGACRIHKNVDLAEMAAKSLL 401 (577)
Q Consensus 354 ~~g~~~~A~~~~~~m-~~~p-~~~~~~~--ll~~~~~~g~~~~a~~~~~~~~ 401 (577)
+.|++++|.+.+++. ...| +...+.. +...+...|++++|...+++..
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 555555555555444 1122 2222222 2222444555555555555443
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.28 E-value=5.3e-05 Score=78.21 Aligned_cols=121 Identities=10% Similarity=-0.069 Sum_probs=62.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHhC-CCCC-CHhHHHHHHHHH
Q 037414 308 TFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAG-RLDEALKLIESM-SVEK-DEGLWGALLGAC 384 (577)
Q Consensus 308 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~ 384 (577)
.|...+....+.+.++.|..+|+.. +..+ .+...|......-.+.+ +.+.|..+|+.. ..-| +...|...+.-.
T Consensus 288 lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~--~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e 364 (493)
T 2uy1_A 288 LRINHLNYVLKKRGLELFRKLFIEL-GNEG--VGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFL 364 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHH-TTSC--CCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh-hCCC--CChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 3444455554555666666666666 2211 23333332222222222 466666666655 1112 233455555555
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHh
Q 037414 385 RIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMT 435 (577)
Q Consensus 385 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 435 (577)
...|+.+.|..+|+++ +.....|...+..-...|+.+.+.++++++.
T Consensus 365 ~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 365 LRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 6666666666666665 2234455555555555677777766666554
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.27 E-value=1.3e-06 Score=78.45 Aligned_cols=173 Identities=7% Similarity=-0.057 Sum_probs=100.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCC
Q 037414 245 AVIDMYAKCGSIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGL 321 (577)
Q Consensus 245 ~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 321 (577)
..+......|++++|.+.++...+ .....|..+...+...|++++|+..|++..... |+...+... .
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~--------~ 78 (198)
T 2fbn_A 9 HHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQ--------I 78 (198)
T ss_dssp -------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCH--------H
T ss_pred chhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcccccchh--------h
Confidence 344455556666666666654332 233456666677777777777777777776532 111000000 0
Q ss_pred HHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 037414 322 VEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKS 399 (577)
Q Consensus 322 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~ 399 (577)
.+.-. .. .....|..+..+|.+.|++++|...+++. ...| +...|..+..++...|++++|...+++
T Consensus 79 ~~~~~---~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 147 (198)
T 2fbn_A 79 LLDKK---KN--------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYK 147 (198)
T ss_dssp HHHHH---HH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHH---HH--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 00000 00 01356667777888889999998888876 3334 566888888999999999999999999
Q ss_pred HHhcCCCCchhHHHHHHHHhccCChhHHH-HHHHHHhhCC
Q 037414 400 LLERQPQNPGHYVLLSNVYANAGRWQDVA-KIRDLMTRRR 438 (577)
Q Consensus 400 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~m~~~g 438 (577)
+++..|.++..+..+..++...++.+++. ..+..|...+
T Consensus 148 al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 148 AASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred HHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999998888887777 5555554433
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.26 E-value=3.1e-05 Score=69.14 Aligned_cols=152 Identities=13% Similarity=-0.013 Sum_probs=109.0
Q ss_pred HhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC---------CChhhH
Q 037414 204 AKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ---------KNVISW 274 (577)
Q Consensus 204 ~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~---------~~~~~~ 274 (577)
...|++++|.++++.+.. ++ .....++..+...|...|++++|...|++..+ .....+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 69 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HP------------ATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRAL 69 (203)
T ss_dssp ----CHHHHHHHHHHHHT-ST------------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred cccccHHHHHHHHHHhcC-Ch------------HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 457889999993332211 11 12456788899999999999999999988754 123568
Q ss_pred HHHHHHHHHcCChHHHHHHHHHhhhC----CCCC--CHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC----HHH
Q 037414 275 SAMIAAYGYHGQGKKALDLFPMMLSS----RVLP--NRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD----VKH 344 (577)
Q Consensus 275 ~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~ 344 (577)
..+...|...|++++|...+++..+. +-.| ....+..+...+...|++++|...+++..+...-..+ ...
T Consensus 70 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 149 (203)
T 3gw4_A 70 HQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACA 149 (203)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 88889999999999999999987653 2122 2345777888899999999999999988643211122 334
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC
Q 037414 345 YTCMVDLLGRAGRLDEALKLIESM 368 (577)
Q Consensus 345 ~~~li~~~~~~g~~~~A~~~~~~m 368 (577)
+..+...|...|++++|.+.+++.
T Consensus 150 ~~~la~~~~~~g~~~~A~~~~~~a 173 (203)
T 3gw4_A 150 FRGLGDLAQQEKNLLEAQQHWLRA 173 (203)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHH
Confidence 677888899999999999888764
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.25 E-value=4e-06 Score=68.52 Aligned_cols=95 Identities=15% Similarity=-0.002 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhcc
Q 037414 344 HYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANA 421 (577)
Q Consensus 344 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 421 (577)
.+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++.+|.++..+..+..+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3445667788999999999999887 3445 6678888889999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHhhCC
Q 037414 422 GRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 422 g~~~~A~~~~~~m~~~g 438 (577)
|++++|...+++..+..
T Consensus 99 g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999887643
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=7.1e-06 Score=69.74 Aligned_cols=115 Identities=12% Similarity=0.035 Sum_probs=88.0
Q ss_pred HHHHhhhCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CC
Q 037414 293 LFPMMLSSRVLPN-RITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SV 370 (577)
Q Consensus 293 l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~ 370 (577)
.|+++... .|+ ...+..+...+...|++++|...|+..++. -+.+...|..+..+|.+.|++++|.+.|++. ..
T Consensus 9 ~~~~al~~--~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 9 TIAMLNEI--SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp SHHHHTTC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHcC--CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34444432 343 345666777888889999999999988753 2335777888888899999999999999887 33
Q ss_pred CC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhH
Q 037414 371 EK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHY 411 (577)
Q Consensus 371 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 411 (577)
.| +...|..+..++...|++++|...++++++..|+++...
T Consensus 85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 85 DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 44 556888888899999999999999999999998877553
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.24 E-value=1.3e-05 Score=64.96 Aligned_cols=97 Identities=18% Similarity=0.238 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHh
Q 037414 342 VKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYA 419 (577)
Q Consensus 342 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 419 (577)
...+..+...+.+.|++++|.+.++++ ...| +..+|..+...+...|++++|...++++.+..|.++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 567788889999999999999999987 2233 56788999999999999999999999999999999999999999999
Q ss_pred ccCChhHHHHHHHHHhhCC
Q 037414 420 NAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 420 ~~g~~~~A~~~~~~m~~~g 438 (577)
..|++++|.+.++++.+..
T Consensus 89 ~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhC
Confidence 9999999999999887643
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.24 E-value=1.4e-05 Score=66.51 Aligned_cols=99 Identities=9% Similarity=-0.041 Sum_probs=82.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 037414 340 PDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNV 417 (577)
Q Consensus 340 p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 417 (577)
.+...+..+...+...|++++|...|++. ...| +...|..+...+...|++++|...++++++.+|.++..+..+..+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 35677778888888888888888888876 3334 466888888889999999999999999999999999999999999
Q ss_pred HhccCChhHHHHHHHHHhhCC
Q 037414 418 YANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 418 ~~~~g~~~~A~~~~~~m~~~g 438 (577)
|...|++++|...+++..+..
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHC
Confidence 999999999999998887543
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.24 E-value=9.8e-05 Score=76.21 Aligned_cols=168 Identities=8% Similarity=-0.110 Sum_probs=112.3
Q ss_pred HHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhh
Q 037414 257 DSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMW 333 (577)
Q Consensus 257 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 333 (577)
+.+..+|+++.. .+...|...+.-+.+.|+.++|.++|++.... |+...+.. +|......++. ++.+.
T Consensus 196 ~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~~---~~~l~ 266 (493)
T 2uy1_A 196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEAV---YGDLK 266 (493)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTHH---HHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhHH---HHHHH
Confidence 446677887654 34667888888888999999999999999987 44332221 22221111111 22222
Q ss_pred HhcC--------CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCC--CHhHHHHHHHHH-HhcCCHHHHHHHHHH
Q 037414 334 DDFA--------VRP---DVKHYTCMVDLLGRAGRLDEALKLIESMSVEK--DEGLWGALLGAC-RIHKNVDLAEMAAKS 399 (577)
Q Consensus 334 ~~~~--------~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p--~~~~~~~ll~~~-~~~g~~~~a~~~~~~ 399 (577)
+.+- ..+ ....|...++.+.+.+.++.|.++|++. ..| +...|......- ...++.+.|..+|+.
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~ 345 (493)
T 2uy1_A 267 RKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSS 345 (493)
T ss_dssp HHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred HHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 2110 001 1345667777777888999999999988 233 333444333222 223479999999999
Q ss_pred HHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHH
Q 037414 400 LLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLM 434 (577)
Q Consensus 400 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 434 (577)
+++..|+++..+...++...+.|+.+.|..+++..
T Consensus 346 al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 346 GLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999988877777888888899999999999886
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.23 E-value=1.2e-05 Score=66.18 Aligned_cols=99 Identities=9% Similarity=0.007 Sum_probs=88.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 037414 340 PDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNV 417 (577)
Q Consensus 340 p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 417 (577)
.+...+..+...+.+.|++++|.+.+++. ...| +...|..+...+...|++++|...++++++..|.++..+..++.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 34677888889999999999999999987 4455 667889999999999999999999999999999999999999999
Q ss_pred HhccCChhHHHHHHHHHhhCC
Q 037414 418 YANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 418 ~~~~g~~~~A~~~~~~m~~~g 438 (577)
|...|++++|.+.+++..+..
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhhHHHHHHHHHHHHHhC
Confidence 999999999999999887643
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.22 E-value=1.6e-05 Score=63.68 Aligned_cols=94 Identities=11% Similarity=0.092 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhc
Q 037414 343 KHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYAN 420 (577)
Q Consensus 343 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 420 (577)
..+..+...+...|++++|.+.+++. ...| +...|..+...+...|++++|...++++.+..|.++..+..++.+|..
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 34444555555666666666666554 2222 444555555666666666666666666666666666666666666666
Q ss_pred cCChhHHHHHHHHHhh
Q 037414 421 AGRWQDVAKIRDLMTR 436 (577)
Q Consensus 421 ~g~~~~A~~~~~~m~~ 436 (577)
.|++++|.+.+++..+
T Consensus 85 ~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLK 100 (118)
T ss_dssp TTCHHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHHHHHH
Confidence 6666666666665554
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.21 E-value=3.6e-05 Score=64.65 Aligned_cols=112 Identities=11% Similarity=-0.039 Sum_probs=75.6
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHH
Q 037414 305 NRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD----VKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWG 378 (577)
Q Consensus 305 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~ 378 (577)
+...+..+...+...|++++|...|+..++ ..|+ ...+..+...|...|++++|.+.+++. ...| +...|.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 344555566666666666666666666652 3444 456666667777777777777777665 2233 455777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHh
Q 037414 379 ALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYA 419 (577)
Q Consensus 379 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 419 (577)
.+..++...|++++|...++++++..|.++..+..+..+..
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 77777888888888888888888888887776666655543
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.19 E-value=1.3e-05 Score=69.29 Aligned_cols=95 Identities=8% Similarity=0.003 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHh
Q 037414 342 VKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYA 419 (577)
Q Consensus 342 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 419 (577)
...+..+...|.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++.+|.++..|..+..+|.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344555556666666666666666655 2233 44566666666666777777777777777777776666777777777
Q ss_pred ccCChhHHHHHHHHHhh
Q 037414 420 NAGRWQDVAKIRDLMTR 436 (577)
Q Consensus 420 ~~g~~~~A~~~~~~m~~ 436 (577)
..|++++|.+.+++..+
T Consensus 91 ~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 77777777777666654
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.19 E-value=4.3e-05 Score=61.08 Aligned_cols=109 Identities=12% Similarity=0.042 Sum_probs=76.1
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHH
Q 037414 307 ITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGAC 384 (577)
Q Consensus 307 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~ 384 (577)
..+..+...+...|++++|...++...+. .+.+...+..+...|.+.|++++|...+++. ...| +...|..+...+
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34555566666777777777777776543 1234566667777777777888877777766 2233 456777778888
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 037414 385 RIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNV 417 (577)
Q Consensus 385 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 417 (577)
...|++++|...++++.+.+|.++..+..+..+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 888888888888888888888887766665554
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.18 E-value=2.1e-05 Score=66.15 Aligned_cols=99 Identities=14% Similarity=0.060 Sum_probs=89.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 037414 340 PDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEKD----EGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLL 414 (577)
Q Consensus 340 p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 414 (577)
.+...+..+...+.+.|++++|.+.|++. ...|+ ...|..+...+...|++++|...++++++..|.++..+..+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 35677888889999999999999999987 66777 56888888999999999999999999999999999999999
Q ss_pred HHHHhccCChhHHHHHHHHHhhCC
Q 037414 415 SNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 415 ~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
..+|...|++++|.+.+++..+..
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC
Confidence 999999999999999999887643
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.16 E-value=2e-05 Score=68.95 Aligned_cols=127 Identities=8% Similarity=0.032 Sum_probs=91.1
Q ss_pred HHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHH-HHHcCCH--
Q 037414 282 GYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDL-LGRAGRL-- 358 (577)
Q Consensus 282 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~-~~~~g~~-- 358 (577)
...|++++|+..+++..... +.+...+..+...|...|++++|...|+..++.. +.+...+..+... |...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcch
Confidence 34677777888887776642 3355677777788888888888888888876532 2345667777777 7788887
Q ss_pred HHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhH
Q 037414 359 DEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHY 411 (577)
Q Consensus 359 ~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 411 (577)
++|...+++. ...| +...|..+...+...|++++|...++++++..|+++...
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 8888888876 3344 456788888888999999999999999999998876433
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.13 E-value=8.3e-06 Score=77.69 Aligned_cols=187 Identities=10% Similarity=-0.066 Sum_probs=98.6
Q ss_pred chHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCc
Q 037414 159 YTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLL 238 (577)
Q Consensus 159 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~ 238 (577)
..+..+...+...|++++|...+.+.++.. +.+...+..+..+|.+.|++++|...|++..+.++ .
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-------------~ 70 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-------------Q 70 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-------------T
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-------------C
Confidence 344455555666666666666666666653 33566666666777777777777777766655332 1
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHhccC--C-ChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 037414 239 DVILGTAVIDMYAKCGSIDSAREIFDRMRQ--K-NVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYA 315 (577)
Q Consensus 239 ~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 315 (577)
+...+..+..+|...|++++|...|++..+ | +...+...+....+.. ++.. +..........+......+ ..
T Consensus 71 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~i~~~l-~~ 145 (281)
T 2c2l_A 71 SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA---KKKR-WNSIEERRIHQESELHSYL-TR 145 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHH---HHHH-HHHHHHTCCCCCCHHHHHH-HH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHH---HHHH-HHHHHHHHHhhhHHHHHHH-HH
Confidence 345566667777777777777777766543 1 1111111111111111 1111 1112222233333322222 22
Q ss_pred HhccCCHHHHHHHHHHhhHhcCCCCCH-HHHHHHHHHHHHc-CCHHHHHHHHHhC
Q 037414 316 CSHTGLVEEGLRLFSSMWDDFAVRPDV-KHYTCMVDLLGRA-GRLDEALKLIESM 368 (577)
Q Consensus 316 ~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~-g~~~~A~~~~~~m 368 (577)
+. .|+.++|.+.++..+ ...|+. .....+-..+.+. +++++|.++|+..
T Consensus 146 l~-~~~~~~A~~~~~~al---~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a 196 (281)
T 2c2l_A 146 LI-AAERERELEECQRNH---EGHEDDGHIRAQQACIEAKHDKYMADMDELFSQV 196 (281)
T ss_dssp HH-HHHHHHHHTTTSGGG---TTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HH-HHHHHHHHHHHHhhh---ccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 22 577788887777765 345553 3333344444444 6678888888877
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.13 E-value=1.6e-05 Score=67.74 Aligned_cols=98 Identities=13% Similarity=0.026 Sum_probs=72.2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHH
Q 037414 308 TFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP-DVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGAC 384 (577)
Q Consensus 308 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~ 384 (577)
.+..+...+.+.|++++|...|+.+++. .| +...|..+..+|.+.|++++|.+.|++. .+.| +...|..+..++
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIY---DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 4556666777778888888888777643 34 4667777777888888888888888776 3344 455777788888
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCc
Q 037414 385 RIHKNVDLAEMAAKSLLERQPQNP 408 (577)
Q Consensus 385 ~~~g~~~~a~~~~~~~~~~~p~~~ 408 (577)
...|++++|...|+++++..|+++
T Consensus 115 ~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCHH
Confidence 888888888888888888887653
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.11 E-value=2e-05 Score=66.22 Aligned_cols=105 Identities=13% Similarity=0.061 Sum_probs=81.1
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHH
Q 037414 307 ITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGAC 384 (577)
Q Consensus 307 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~ 384 (577)
..+..+...+...|++++|...|+..++. -+.+...|..+..+|.+.|++++|...|++. ...| +...|..+..++
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 34555667778888888888888888753 2235677778888888999999999988887 3344 455778888889
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCchhHHH
Q 037414 385 RIHKNVDLAEMAAKSLLERQPQNPGHYVL 413 (577)
Q Consensus 385 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 413 (577)
...|++++|...++++++..|.++.....
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 125 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAAAQPAHEAL 125 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCcchHHH
Confidence 99999999999999999998887765444
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.11 E-value=3e-05 Score=63.46 Aligned_cols=109 Identities=9% Similarity=-0.063 Sum_probs=76.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHH
Q 037414 308 TFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACR 385 (577)
Q Consensus 308 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~ 385 (577)
.+..+...+...|++++|...|+..++. -+.+...|..+..+|.+.|++++|.+.+++. ...| +...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 4555566667777777777777777643 1234667777777777888888888877776 3344 4557777888888
Q ss_pred hcCCHHHHHHHHHHHHhcC------CCCchhHHHHHHHH
Q 037414 386 IHKNVDLAEMAAKSLLERQ------PQNPGHYVLLSNVY 418 (577)
Q Consensus 386 ~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~ 418 (577)
..|++++|...++++++.+ |.++.....+..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 8888888888888888887 76666555554443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=0.0012 Score=63.84 Aligned_cols=100 Identities=15% Similarity=0.067 Sum_probs=51.5
Q ss_pred CHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChH--------HHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCC--
Q 037414 255 SIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGK--------KALDLFPMMLSSRVLPNRITFVSLLYACSHTGL-- 321 (577)
Q Consensus 255 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--------~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~-- 321 (577)
+.++++++++++.+ +|...|+--...+.+.|.++ ++++.++++.+.. .-|...++.....+.+.+.
T Consensus 140 ~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~ 218 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAE 218 (349)
T ss_dssp CCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCC
T ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccc
Confidence 45555555555554 23344444444444434343 6666777666653 2355555555555555554
Q ss_pred -----HHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCC
Q 037414 322 -----VEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGR 357 (577)
Q Consensus 322 -----~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 357 (577)
++++.+.++.++.. -+-|...|+-+-..+.+.|+
T Consensus 219 ~~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 219 TSSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred cchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCC
Confidence 56666666666532 22344555555555555444
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.09 E-value=3.3e-05 Score=63.03 Aligned_cols=98 Identities=6% Similarity=0.002 Sum_probs=86.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 037414 341 DVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVY 418 (577)
Q Consensus 341 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 418 (577)
+...+..+...+...|++++|.+.+++. ...| +...|..+...+...|++++|...++++.+..|.++..+..++.+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 3567777888899999999999999987 3334 6678888999999999999999999999999999999999999999
Q ss_pred hccCChhHHHHHHHHHhhCC
Q 037414 419 ANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 419 ~~~g~~~~A~~~~~~m~~~g 438 (577)
...|++++|.+.+++..+..
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~ 110 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELD 110 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHS
T ss_pred HHhCCHHHHHHHHHHHHhcC
Confidence 99999999999999887643
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.08 E-value=4e-05 Score=66.10 Aligned_cols=108 Identities=12% Similarity=-0.010 Sum_probs=86.2
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHH
Q 037414 305 NRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLG 382 (577)
Q Consensus 305 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~ 382 (577)
+...+..+...+...|++++|...|+..++. .+.+...|..+...|.+.|++++|...|++. .+.| +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3456667777888888888888888888753 1235677888888899999999999988887 3345 5668889999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 037414 383 ACRIHKNVDLAEMAAKSLLERQPQNPGHYVLL 414 (577)
Q Consensus 383 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 414 (577)
++...|++++|...++++++.+|+++..+...
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 119 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKR 119 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 99999999999999999999999988765443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.08 E-value=1.6e-05 Score=65.40 Aligned_cols=94 Identities=4% Similarity=-0.059 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc-------hhHHH
Q 037414 343 KHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNP-------GHYVL 413 (577)
Q Consensus 343 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-------~~~~~ 413 (577)
..+.-+...|.+.|++++|++.|++. .+.| +...|..+..++...|++++|+..++++++.+|.+. .+|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 34556777888889999999988876 4445 566888888999999999999999999998877654 36777
Q ss_pred HHHHHhccCChhHHHHHHHHHhh
Q 037414 414 LSNVYANAGRWQDVAKIRDLMTR 436 (577)
Q Consensus 414 l~~~~~~~g~~~~A~~~~~~m~~ 436 (577)
+..+|...|++++|.+.+++..+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 88888999999999999987654
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.07 E-value=0.00011 Score=74.48 Aligned_cols=190 Identities=6% Similarity=-0.070 Sum_probs=139.3
Q ss_pred HHHHHhcCCHHHHHHHHHhccC--CC---h---------------hhHHHHHHHHHHcCChHHHHHHHHHhhhC-CCCCC
Q 037414 247 IDMYAKCGSIDSAREIFDRMRQ--KN---V---------------ISWSAMIAAYGYHGQGKKALDLFPMMLSS-RVLPN 305 (577)
Q Consensus 247 i~~~~~~g~~~~A~~~~~~~~~--~~---~---------------~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~ 305 (577)
...+.+.|++++|.+.|..+.+ ++ . .++..+...|...|++++|.+.+.++... +..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 4567889999999999998753 11 0 13778899999999999999999987653 11122
Q ss_pred HH----HHHHHHHHHhccCCHHHHHHHHHHhhHh---cCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhC-----C--C
Q 037414 306 RI----TFVSLLYACSHTGLVEEGLRLFSSMWDD---FAVRPD-VKHYTCMVDLLGRAGRLDEALKLIESM-----S--V 370 (577)
Q Consensus 306 ~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~---~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-----~--~ 370 (577)
.. ..+.+-..+...|+.+++..++...... .+..+. ..++..+...|...|++++|..++++. + -
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 21 2233334455678999999988877542 122222 567788999999999999999998876 1 1
Q ss_pred CCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCC----chhHHHHHHHHhccCChhHHHHHHHHHhh
Q 037414 371 EKD-EGLWGALLGACRIHKNVDLAEMAAKSLLERQ---PQN----PGHYVLLSNVYANAGRWQDVAKIRDLMTR 436 (577)
Q Consensus 371 ~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 436 (577)
+|. ..++..++..|...|++++|..++++.+... +.+ ...+..+...+...|++++|...+.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 222 3478888899999999999999999987653 222 24567788889999999999988876643
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=0.00016 Score=69.95 Aligned_cols=214 Identities=13% Similarity=0.102 Sum_probs=145.9
Q ss_pred CCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcC-CHHHHHHHHHhccC---CChhhHHHHHHHHH
Q 037414 207 KVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCG-SIDSAREIFDRMRQ---KNVISWSAMIAAYG 282 (577)
Q Consensus 207 g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 282 (577)
+..++|+++++++...++. +..+|+.--..+...| .+++++.+++.+.. ++...|+.-...+.
T Consensus 68 e~se~AL~lt~~~L~~nP~-------------~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~ 134 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNPA-------------HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLD 134 (349)
T ss_dssp CCSHHHHHHHHHHHHHCTT-------------CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCch-------------hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 3445677777666543322 3345555566666677 59999999998875 45667887777777
Q ss_pred Hc-C-ChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHH--------HHHHHHHHhhHhcCCCCCHHHHHHHHHHH
Q 037414 283 YH-G-QGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVE--------EGLRLFSSMWDDFAVRPDVKHYTCMVDLL 352 (577)
Q Consensus 283 ~~-g-~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~--------~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 352 (577)
+. + ++++++++++++.+.. +-|...++.-.-.+.+.|..+ ++.+..+.+++. -.-+...|+-....+
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL 211 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLR 211 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 76 7 8999999999999764 336666665444444444444 889999999864 234677787777777
Q ss_pred HHcCC-------HHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHhc
Q 037414 353 GRAGR-------LDEALKLIESM-SVEK-DEGLWGALLGACRIHKNV--------------------DLAEMAAKSLLER 403 (577)
Q Consensus 353 ~~~g~-------~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~--------------------~~a~~~~~~~~~~ 403 (577)
.+.++ ++++++.+++. ...| |...|+-+-..+.+.|.. ........++...
T Consensus 212 ~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (349)
T 3q7a_A 212 VSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSD 291 (349)
T ss_dssp TTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-
T ss_pred HhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhc
Confidence 77776 68888888776 3345 677888777777766653 2223333333222
Q ss_pred C------CCCchhHHHHHHHHhccCChhHHHHHHHHHhh
Q 037414 404 Q------PQNPGHYVLLSNVYANAGRWQDVAKIRDLMTR 436 (577)
Q Consensus 404 ~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 436 (577)
. +.++.+...|+.+|...|+.++|.++++.+.+
T Consensus 292 ~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 292 PLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 2 45667788899999999999999999999864
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.04 E-value=3e-05 Score=63.58 Aligned_cols=89 Identities=18% Similarity=0.181 Sum_probs=53.6
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCCCH----hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---chhHHHHHHHHh
Q 037414 348 MVDLLGRAGRLDEALKLIESM-SVEKDE----GLWGALLGACRIHKNVDLAEMAAKSLLERQPQN---PGHYVLLSNVYA 419 (577)
Q Consensus 348 li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~ 419 (577)
+...+.+.|++++|.+.|++. ...|+. ..+..+..++...|++++|...++++++..|++ +.++..+..+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 334455566666666666554 112322 255555566666666666666666666666666 555666666666
Q ss_pred ccCChhHHHHHHHHHhh
Q 037414 420 NAGRWQDVAKIRDLMTR 436 (577)
Q Consensus 420 ~~g~~~~A~~~~~~m~~ 436 (577)
..|++++|...++...+
T Consensus 88 ~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 66677776666666654
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=97.96 E-value=7.3e-05 Score=73.14 Aligned_cols=93 Identities=4% Similarity=-0.079 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHH
Q 037414 307 ITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGAC 384 (577)
Q Consensus 307 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~ 384 (577)
..+..+..++.+.|++++|...++..++. -+.+...|..+..+|...|++++|...|++. .+.| +...+..+...+
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~ 274 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALEL--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQ 274 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 34455555555555555555555555432 1223455555555566666666666655554 2233 334555555555
Q ss_pred HhcCCHHHH-HHHHHHHH
Q 037414 385 RIHKNVDLA-EMAAKSLL 401 (577)
Q Consensus 385 ~~~g~~~~a-~~~~~~~~ 401 (577)
...|+.++| ...+++++
T Consensus 275 ~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 275 QRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666555 33445444
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.96 E-value=2.4e-05 Score=80.63 Aligned_cols=116 Identities=8% Similarity=-0.020 Sum_probs=85.3
Q ss_pred HHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHH
Q 037414 315 ACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDL 392 (577)
Q Consensus 315 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~ 392 (577)
.+.+.|++++|.+.+++.++. -+.+...|..+..+|.+.|++++|.+.+++. ...| +...|..+..++...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 455677888888888877653 1224677777888888888888888888776 3344 45678888888888888888
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHH--HhccCChhHHHHHHH
Q 037414 393 AEMAAKSLLERQPQNPGHYVLLSNV--YANAGRWQDVAKIRD 432 (577)
Q Consensus 393 a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 432 (577)
|+..++++++..|.++..+..+..+ +.+.|++++|.+.++
T Consensus 93 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8888888888888888888777777 777888888888876
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.96 E-value=8.8e-05 Score=61.41 Aligned_cols=100 Identities=8% Similarity=-0.152 Sum_probs=70.2
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHH
Q 037414 305 NRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLG 382 (577)
Q Consensus 305 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~ 382 (577)
+...+..+...+...|++++|...|...++. .+.+...+..+...|...|++++|...+++. ...| +...|..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 4556666666777777777777777776643 1234566777777777777777777777766 2233 4557777778
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCC
Q 037414 383 ACRIHKNVDLAEMAAKSLLERQPQ 406 (577)
Q Consensus 383 ~~~~~g~~~~a~~~~~~~~~~~p~ 406 (577)
.+...|++++|...++++++..|+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 888888888888888888877766
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.96 E-value=6.4e-05 Score=77.00 Aligned_cols=95 Identities=14% Similarity=0.095 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHh
Q 037414 342 VKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYA 419 (577)
Q Consensus 342 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 419 (577)
...|..+..+|.+.|++++|+..+++. .+.| +...|..+..++...|++++|+..|+++++.+|.+..++..+..++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 467788888999999999999999887 3344 56789999999999999999999999999999999999999999999
Q ss_pred ccCChhHHHH-HHHHHhh
Q 037414 420 NAGRWQDVAK-IRDLMTR 436 (577)
Q Consensus 420 ~~g~~~~A~~-~~~~m~~ 436 (577)
+.|+++++.+ .+..|..
T Consensus 397 ~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 397 KAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 9999988775 4555543
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.95 E-value=4.3e-05 Score=62.42 Aligned_cols=96 Identities=10% Similarity=0.090 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------chhHH
Q 037414 342 VKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQN-------PGHYV 412 (577)
Q Consensus 342 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~ 412 (577)
...+..+...+...|++++|...|++. ...| +...+..+...+...|++++|...++++.+..|.+ +.++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345666777788888888888888776 2233 56678888888889999999999999998887665 77888
Q ss_pred HHHHHHhccCChhHHHHHHHHHhhC
Q 037414 413 LLSNVYANAGRWQDVAKIRDLMTRR 437 (577)
Q Consensus 413 ~l~~~~~~~g~~~~A~~~~~~m~~~ 437 (577)
.++.+|...|++++|.+.++...+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 9999999999999999999888763
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.95 E-value=4.5e-05 Score=64.55 Aligned_cols=90 Identities=14% Similarity=0.007 Sum_probs=70.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-CCCCC-------------HhHHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CC
Q 037414 347 CMVDLLGRAGRLDEALKLIESM-SVEKD-------------EGLWGALLGACRIHKNVDLAEMAAKSLLER-------QP 405 (577)
Q Consensus 347 ~li~~~~~~g~~~~A~~~~~~m-~~~p~-------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------~p 405 (577)
.....+.+.|++++|.+.|++. .+.|+ ...|..+..++...|++++|+..++++++. +|
T Consensus 16 ~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~p 95 (159)
T 2hr2_A 16 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ 95 (159)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCC
Confidence 3344455566666666666654 22222 238888888899999999999999999999 99
Q ss_pred CCchhH----HHHHHHHhccCChhHHHHHHHHHhh
Q 037414 406 QNPGHY----VLLSNVYANAGRWQDVAKIRDLMTR 436 (577)
Q Consensus 406 ~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~ 436 (577)
++...| .....++...|++++|...|++..+
T Consensus 96 d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 96 DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 998899 9999999999999999999988765
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.94 E-value=5.7e-05 Score=59.73 Aligned_cols=99 Identities=17% Similarity=0.116 Sum_probs=63.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC---CHhHHHHHHHH
Q 037414 308 TFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK---DEGLWGALLGA 383 (577)
Q Consensus 308 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~~~~~~ll~~ 383 (577)
.+..+...+...|++++|...++..++. .+.+...+..+...|...|++++|.+.+++. ...| +...|..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 3444555566666666666666666543 1234555666666777777777777777665 2233 35567777777
Q ss_pred HHhc-CCHHHHHHHHHHHHhcCCCCc
Q 037414 384 CRIH-KNVDLAEMAAKSLLERQPQNP 408 (577)
Q Consensus 384 ~~~~-g~~~~a~~~~~~~~~~~p~~~ 408 (577)
+... |++++|.+.++++.+..|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 7777 788888888887777777653
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00069 Score=68.46 Aligned_cols=261 Identities=6% Similarity=-0.053 Sum_probs=151.8
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCCc----------------chHHHHHHHHhcCCChHHHHHHHHHHHHcC-CCCcH
Q 037414 131 GGFSKVADFINCFETFREFIRCGMQLDS----------------YTLPFVIRACRDRKDIVMGRLIHDIVLKSG-LDIDQ 193 (577)
Q Consensus 131 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~----------------~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~~ 193 (577)
..+.+.|++++|++.|....+....... ..+..+...|...|++++|.+.+..+.+.- -.++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 3455667777777777777664221110 125666777778888888887777665421 11111
Q ss_pred ----HHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC-
Q 037414 194 ----FVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ- 268 (577)
Q Consensus 194 ----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~- 268 (577)
.+.+.+-..+...|+.++|..++++.... ..-. .....-..++..|...|...|++++|..++++...
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 164 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEF-----AKRE--KRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLRE 164 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHH-----HHHS--SCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-----HHHh--CccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Confidence 23334444555668888888887765321 0000 01111245778899999999999999999987642
Q ss_pred -------C-ChhhHHHHHHHHHHcCChHHHHHHHHHhhhC----CCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhhH
Q 037414 269 -------K-NVISWSAMIAAYGYHGQGKKALDLFPMMLSS----RVLPN--RITFVSLLYACSHTGLVEEGLRLFSSMWD 334 (577)
Q Consensus 269 -------~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 334 (577)
+ .+..|..++..|...|++++|..++++.... +.+|. ...+..+...+...|++++|...|....+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 165 FKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1 1346888899999999999999999887643 11222 23556666778889999999888877754
Q ss_pred hc---CCCCCHHH----HHHHHHHHHHcCCHHHHHHHHHhC---C--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 037414 335 DF---AVRPDVKH----YTCMVDLLGRAGRLDEALKLIESM---S--VEKDEGLWGALLGACRIHKNVDLAEMAAKS 399 (577)
Q Consensus 335 ~~---~~~p~~~~----~~~li~~~~~~g~~~~A~~~~~~m---~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 399 (577)
.+ +....... ...++-.....+..+.....+... . ..|+...+..++.++. .+++.........
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~l~~~~~~~~~ 320 (434)
T 4b4t_Q 245 SYHNLTTHNSYEKACQVLKYMLLSKIMLNLIDDVKNILNAKYTKETYQSRGIDAMKAVAEAYN-NRSLLDFNTALKQ 320 (434)
T ss_dssp HHHHTTTSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHCSSSSTTCCCHHHHHHHHHHHHHH-HTCHHHHHHHHHH
T ss_pred HhhhhhhhhhHHHHHHHHHHHHHHHHhccchhHHHhHHHHHHHHHHhcchhhhHHHHHHHHHH-hhhHHHHHHHHHH
Confidence 32 11111111 111112222334444444555443 1 1234456666666654 3445444444443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.92 E-value=1.1e-05 Score=65.40 Aligned_cols=82 Identities=17% Similarity=0.127 Sum_probs=48.6
Q ss_pred cCCHHHHHHHHHhC-CC---CC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHH
Q 037414 355 AGRLDEALKLIESM-SV---EK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAK 429 (577)
Q Consensus 355 ~g~~~~A~~~~~~m-~~---~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 429 (577)
.|++++|+..|++. .. .| +...|..+...+...|++++|+..++++++.+|+++..+..+..+|...|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 45555666666555 32 13 233556666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHhh
Q 037414 430 IRDLMTR 436 (577)
Q Consensus 430 ~~~~m~~ 436 (577)
.+++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666554
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.90 E-value=9.4e-06 Score=72.68 Aligned_cols=150 Identities=8% Similarity=-0.054 Sum_probs=97.1
Q ss_pred HHHHHHHHcCCChHHHHHHHhcCCCC---CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCc--------------
Q 037414 96 NKLLYIYALHKALTDAHALFNGMKER---DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDS-------------- 158 (577)
Q Consensus 96 ~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------------- 158 (577)
+..+......|+++.|.+.|+.-.+. ....|..+...+.+.|++++|++.|++..+.... +.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~ 86 (198)
T 2fbn_A 8 HHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIH-TEEWDDQILLDKKKNI 86 (198)
T ss_dssp --------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT-CTTCCCHHHHHHHHHH
T ss_pred cchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc-ccccchhhHHHHHHHH
Confidence 33444455566777777666543321 3446777788888999999999999988874211 22
Q ss_pred --chHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCC
Q 037414 159 --YTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKF 236 (577)
Q Consensus 159 --~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~ 236 (577)
..+..+..++...|++++|...+...++.. +.+...+..+..+|...|++++|.+.|++..+.+
T Consensus 87 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~------------- 152 (198)
T 2fbn_A 87 EISCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN------------- 152 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-------------
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-------------
Confidence 567777778888899999999999888874 5567888888899999999999999888765422
Q ss_pred CcchhhHHHHHHHHHhcCCHHHHH
Q 037414 237 LLDVILGTAVIDMYAKCGSIDSAR 260 (577)
Q Consensus 237 ~~~~~~~~~Li~~~~~~g~~~~A~ 260 (577)
+.+..++..+..++...++.+++.
T Consensus 153 p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 153 PNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHC--
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 124456666666666666665554
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00017 Score=58.84 Aligned_cols=103 Identities=11% Similarity=0.006 Sum_probs=69.8
Q ss_pred HHHHHhccCCHHHHHHHHHHhhHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HhHHHHHHHHHH
Q 037414 312 LLYACSHTGLVEEGLRLFSSMWDDFAVRPD-VKHYTCMVDLLGRAGRLDEALKLIESM-SVEKD----EGLWGALLGACR 385 (577)
Q Consensus 312 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~ 385 (577)
+...+...|++++|...|+.+++...-.+. ...+..+...|.+.|++++|...|++. ...|+ ...+..+..++.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 444556677777777777777653211111 145666777778888888888887776 22343 446777777888
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 037414 386 IHKNVDLAEMAAKSLLERQPQNPGHYVLL 414 (577)
Q Consensus 386 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 414 (577)
..|++++|...++++++..|+++......
T Consensus 88 ~~g~~~~A~~~~~~~~~~~p~~~~~~~a~ 116 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQYPGSDAARVAQ 116 (129)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTSHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 88999999999999988888876554433
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.90 E-value=9.1e-05 Score=75.93 Aligned_cols=126 Identities=10% Similarity=0.045 Sum_probs=100.2
Q ss_pred HHhccCCHHHHHHHHHHhhHhcC--CCC----CHHHHHHHHHHHHHcCCHHHHHHHHHhC---------CCCCCHh-HHH
Q 037414 315 ACSHTGLVEEGLRLFSSMWDDFA--VRP----DVKHYTCMVDLLGRAGRLDEALKLIESM---------SVEKDEG-LWG 378 (577)
Q Consensus 315 a~~~~g~~~~a~~~~~~m~~~~~--~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~~~-~~~ 378 (577)
.+...|++++|..++++.++... +.| ...+++.|..+|...|++++|+.++++. +..|+.. +++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 45678999999999888765321 222 2578889999999999999999988875 3345443 889
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCch---hHHHHHHHHhccCChhHHHHHHHHHhhCCCc
Q 037414 379 ALLGACRIHKNVDLAEMAAKSLLE-----RQPQNPG---HYVLLSNVYANAGRWQDVAKIRDLMTRRRLK 440 (577)
Q Consensus 379 ~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 440 (577)
.|...|...|++++|+.+++++++ ++|++|. ....|..++...+++++|+.++..+++.-.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~ 467 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALN 467 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999875 4677664 4567888889999999999999999876443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00019 Score=58.45 Aligned_cols=106 Identities=10% Similarity=0.022 Sum_probs=60.7
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CC----CCC----HhHHHH
Q 037414 309 FVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SV----EKD----EGLWGA 379 (577)
Q Consensus 309 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~----~p~----~~~~~~ 379 (577)
+..+...+...|++++|...++..++. .+.+...+..+...|...|++++|...+++. .. .++ ..+|..
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 444445555555555555555555432 1223445555555666666666666666554 11 112 446666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 037414 380 LLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNV 417 (577)
Q Consensus 380 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 417 (577)
+...+...|++++|...++++++..| ++.....+..+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~ 121 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHH
Confidence 77777777888888888887777776 44444444443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.88 E-value=5.7e-05 Score=64.95 Aligned_cols=64 Identities=14% Similarity=0.119 Sum_probs=55.3
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhC
Q 037414 374 EGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRR 437 (577)
Q Consensus 374 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 437 (577)
...|..+..++...|++++|+..++++++.+|.++.+|..++.+|...|++++|...++...+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 3477788888889999999999999999999999999999999999999999999998887653
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00011 Score=62.32 Aligned_cols=93 Identities=13% Similarity=0.060 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC------CCch
Q 037414 344 HYTCMVDLLGRAGRLDEALKLIESM----SVEKD----EGLWGALLGACRIHKNVDLAEMAAKSLLERQP------QNPG 409 (577)
Q Consensus 344 ~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p------~~~~ 409 (577)
.+..+...|...|++++|.+.+++. +..++ ...+..+...+...|++++|...+++.++..+ ....
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 4445555566666666666655554 00111 23556666667777788888777777765421 1234
Q ss_pred hHHHHHHHHhccCChhHHHHHHHHHhh
Q 037414 410 HYVLLSNVYANAGRWQDVAKIRDLMTR 436 (577)
Q Consensus 410 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 436 (577)
.+..+...|...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 677788888888888888888876653
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00012 Score=72.65 Aligned_cols=137 Identities=10% Similarity=-0.017 Sum_probs=100.6
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-CHHHHHHHHH
Q 037414 272 ISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP-DVKHYTCMVD 350 (577)
Q Consensus 272 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~ 350 (577)
..|..+...+.+.|++++|+..|++.++. .|+. ......+ ... ...| +...|..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~----------~~~~~~~-------~~~---~~~~~~~~~~~nla~ 281 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGS----------RAAAEDA-------DGA---KLQPVALSCVLNIGA 281 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHH----------HHHSCHH-------HHG---GGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcC----------ccccChH-------HHH---HHHHHHHHHHHHHHH
Confidence 34666777777788888888877776642 0000 0000111 110 1122 3567788888
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHH
Q 037414 351 LLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVA 428 (577)
Q Consensus 351 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 428 (577)
+|.+.|++++|.+.+++. ...| +...|..+..++...|++++|+..+++++++.|.+...+..+..++...++.+++.
T Consensus 282 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 282 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887 5556 56688889999999999999999999999999999999999999998888887776
Q ss_pred HH
Q 037414 429 KI 430 (577)
Q Consensus 429 ~~ 430 (577)
+.
T Consensus 362 k~ 363 (370)
T 1ihg_A 362 KA 363 (370)
T ss_dssp HC
T ss_pred HH
Confidence 53
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00016 Score=74.39 Aligned_cols=120 Identities=13% Similarity=0.029 Sum_probs=85.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccC
Q 037414 244 TAVIDMYAKCGSIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTG 320 (577)
Q Consensus 244 ~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 320 (577)
..+...|.+.|++++|.+.|++..+ .+...|..+..+|.+.|++++|++.+++..+.. +-+...+..+..+|...|
T Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 10 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALG 88 (477)
T ss_dssp SSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 3345567788899999999888754 356788888888999999999999998888763 335667778888888889
Q ss_pred CHHHHHHHHHHhhHhcCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHH
Q 037414 321 LVEEGLRLFSSMWDDFAVRPDVKHYTCMVDL--LGRAGRLDEALKLIE 366 (577)
Q Consensus 321 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~~~ 366 (577)
++++|.+.+++.++...- +...+..+..+ +.+.|++++|.+.++
T Consensus 89 ~~~eA~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 89 KFRAALRDYETVVKVKPH--DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp CHHHHHHHHHHHHHHSTT--CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999988888754222 23344444444 777888888888887
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.83 E-value=0.0001 Score=62.54 Aligned_cols=132 Identities=14% Similarity=0.017 Sum_probs=66.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhccC-----CCh----hhHHHHHHHHHHcCChHHHHHHHHHhhhCCCC-CCHHHH
Q 037414 240 VILGTAVIDMYAKCGSIDSAREIFDRMRQ-----KNV----ISWSAMIAAYGYHGQGKKALDLFPMMLSSRVL-PNRITF 309 (577)
Q Consensus 240 ~~~~~~Li~~~~~~g~~~~A~~~~~~~~~-----~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~ 309 (577)
..++..+...|...|++++|...+++..+ .+. ..+..+...|...|++++|...+++..+.... ++..
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-- 86 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA-- 86 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH--
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcH--
Confidence 34556666666666666666666665542 111 24444555555555555555555554432000 0000
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCC-CHhHHHHHH
Q 037414 310 VSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-------SVEK-DEGLWGALL 381 (577)
Q Consensus 310 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p-~~~~~~~ll 381 (577)
.....+..+...+...|++++|.+.+++. +..+ ....+..+.
T Consensus 87 ------------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la 136 (164)
T 3ro3_A 87 ------------------------------VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLG 136 (164)
T ss_dssp ------------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ------------------------------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHH
Confidence 00223344444555555555555554443 1001 122455566
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc
Q 037414 382 GACRIHKNVDLAEMAAKSLLER 403 (577)
Q Consensus 382 ~~~~~~g~~~~a~~~~~~~~~~ 403 (577)
..+...|++++|...+++.++.
T Consensus 137 ~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 137 NAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHH
Confidence 6667777777777777766654
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00011 Score=60.28 Aligned_cols=102 Identities=10% Similarity=0.053 Sum_probs=66.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCC--CCCC----HHHHH
Q 037414 240 VILGTAVIDMYAKCGSIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR--VLPN----RITFV 310 (577)
Q Consensus 240 ~~~~~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~----~~t~~ 310 (577)
...+..|...|.+.|++++|...|++..+ .+...|+.+..+|.+.|++++|++.|++.++.. ..++ ..+|.
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 34566677788888888888888877653 345667777778888888888888877776531 1111 12455
Q ss_pred HHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHH
Q 037414 311 SLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKH 344 (577)
Q Consensus 311 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~ 344 (577)
.+..++...|++++|.+.|+..++. .|+...
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~---~~~~~~ 118 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE---FRDPEL 118 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH---SCCHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh---CcCHHH
Confidence 5666666777777777777766542 355443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=0.0018 Score=62.36 Aligned_cols=191 Identities=10% Similarity=0.041 Sum_probs=109.6
Q ss_pred HHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcC--CHHHHHHHHHhccC---CChhhHHHHHHHHHH
Q 037414 209 IDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCG--SIDSAREIFDRMRQ---KNVISWSAMIAAYGY 283 (577)
Q Consensus 209 ~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 283 (577)
++++..+++.+...++ -+..+|+--...+.+.| .++++..+++++.+ +|...|+--...+..
T Consensus 90 l~~EL~~~~~~L~~~P-------------Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~ 156 (331)
T 3dss_A 90 VKAELGFLESCLRVNP-------------KSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQ 156 (331)
T ss_dssp HHHHHHHHHHHHHHCT-------------TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-------------CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 4566666666654322 23445555555566666 47888888888875 566777777777777
Q ss_pred cCC-hHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcc--------------CCHHHHHHHHHHhhHhcCCCCCHHHHHHH
Q 037414 284 HGQ-GKKALDLFPMMLSSRVLPNRITFVSLLYACSHT--------------GLVEEGLRLFSSMWDDFAVRPDVKHYTCM 348 (577)
Q Consensus 284 ~g~-~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~--------------g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 348 (577)
.|. ++++++.++++.+.. +-|...++.....+.+. +.++++.+.+...+.. -+-|...|+-+
T Consensus 157 l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~ 233 (331)
T 3dss_A 157 AAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYH 233 (331)
T ss_dssp TTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHH
T ss_pred hCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 787 588888888888764 33555665544444333 3466777777766643 22244555544
Q ss_pred HHHHHHc-----------CCHHHHHHHHHhC-CCCCCHhHHHHHHHH-----HHhcCCHHHHHHHHHHHHhcCCCCchhH
Q 037414 349 VDLLGRA-----------GRLDEALKLIESM-SVEKDEGLWGALLGA-----CRIHKNVDLAEMAAKSLLERQPQNPGHY 411 (577)
Q Consensus 349 i~~~~~~-----------g~~~~A~~~~~~m-~~~p~~~~~~~ll~~-----~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 411 (577)
-..+.+. +.++++++.++++ ...||. .|..+-.+ ....+..++....+.++.+.+|....-|
T Consensus 234 r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y 312 (331)
T 3dss_A 234 RWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL 312 (331)
T ss_dssp HHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHH
Confidence 4444443 3455666666555 344543 23321111 1124555566666666666666655555
Q ss_pred HHHHH
Q 037414 412 VLLSN 416 (577)
Q Consensus 412 ~~l~~ 416 (577)
.-+..
T Consensus 313 ~d~~~ 317 (331)
T 3dss_A 313 DDLRS 317 (331)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00011 Score=59.76 Aligned_cols=96 Identities=13% Similarity=0.060 Sum_probs=60.9
Q ss_pred HHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcC
Q 037414 311 SLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHK 388 (577)
Q Consensus 311 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g 388 (577)
.+...+.+.|++++|...|+..++. -+.+...|..+..++.+.|++++|+..|++. ...| +...|..+...+...|
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 3445566677777777777777643 1224566666777777777777777777766 3344 4456777777777777
Q ss_pred CHHHHHHHHHHHHhcCCCCc
Q 037414 389 NVDLAEMAAKSLLERQPQNP 408 (577)
Q Consensus 389 ~~~~a~~~~~~~~~~~p~~~ 408 (577)
++++|...++++++.+|.+.
T Consensus 100 ~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 100 NANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHC------
T ss_pred CHHHHHHHHHHHHHhCcCCC
Confidence 78888888877777777643
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=0.0033 Score=60.47 Aligned_cols=180 Identities=12% Similarity=0.074 Sum_probs=130.6
Q ss_pred HHHHHHHHHhccC---CChhhHHHHHHHHHHcCC--hHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCC-HHHHHHHH
Q 037414 256 IDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQ--GKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGL-VEEGLRLF 329 (577)
Q Consensus 256 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a~~~~ 329 (577)
+++++.+++.+.. ++..+|+.-...+...|+ +++++++++++.+.. +-|...++.-.-.+...|. ++++.+.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 6788888888764 567788888788888884 899999999999864 3466777766666667777 68999999
Q ss_pred HHhhHhcCCCCCHHHHHHHHHHHHHc--------------CCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhc------
Q 037414 330 SSMWDDFAVRPDVKHYTCMVDLLGRA--------------GRLDEALKLIESM-SVEK-DEGLWGALLGACRIH------ 387 (577)
Q Consensus 330 ~~m~~~~~~~p~~~~~~~li~~~~~~--------------g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~------ 387 (577)
..+++. -+-+...|+-....+.+. +.++++++.+++. ...| |...|+-+-..+...
T Consensus 169 ~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHH--CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHH--CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence 999864 234566676666555554 4578888888876 3345 667887555555444
Q ss_pred -----CCHHHHHHHHHHHHhcCCCCchhHHHHHHH---HhccCChhHHHHHHHHHhhCC
Q 037414 388 -----KNVDLAEMAAKSLLERQPQNPGHYVLLSNV---YANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 388 -----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~---~~~~g~~~~A~~~~~~m~~~g 438 (577)
+.++++++.++++++.+|++.-.+..++.. ....|..+++...+.++.+-+
T Consensus 247 ~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 457899999999999999986554444332 234677888888888887643
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.74 E-value=4.7e-05 Score=74.54 Aligned_cols=148 Identities=10% Similarity=-0.010 Sum_probs=78.9
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHH
Q 037414 271 VISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVD 350 (577)
Q Consensus 271 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 350 (577)
...|..+...+.+.|++++|+..|++.... .|+... +...++.+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 345667777777888888888888887763 344332 223344444332221 136677788
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH-hccCChhHH
Q 037414 351 LLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVY-ANAGRWQDV 427 (577)
Q Consensus 351 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~A 427 (577)
+|.+.|++++|...+++. ...| +...|..+..++...|++++|+..++++++.+|.++..+..|..+. ...+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999998888876 3344 5668888888899999999999999999988888888888777773 455667777
Q ss_pred HHHHHHHhhCC
Q 037414 428 AKIRDLMTRRR 438 (577)
Q Consensus 428 ~~~~~~m~~~g 438 (577)
.+.+..|....
T Consensus 319 ~~~~~~~l~~~ 329 (338)
T 2if4_A 319 KEMYKGIFKGK 329 (338)
T ss_dssp -----------
T ss_pred HHHHHHhhCCC
Confidence 77887776543
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.73 E-value=4.3e-05 Score=61.72 Aligned_cols=91 Identities=7% Similarity=0.003 Sum_probs=60.7
Q ss_pred cCCHHHHHHHHHHhhHhcCC-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHH
Q 037414 319 TGLVEEGLRLFSSMWDDFAV-RP-DVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAE 394 (577)
Q Consensus 319 ~g~~~~a~~~~~~m~~~~~~-~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~ 394 (577)
.|++++|...|++.++. +. .| +...+..+...|.+.|++++|.+.|++. ...| +...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 46666777777776532 10 12 3456667777777888888888887776 3334 4557777778888888888888
Q ss_pred HHHHHHHhcCCCCchh
Q 037414 395 MAAKSLLERQPQNPGH 410 (577)
Q Consensus 395 ~~~~~~~~~~p~~~~~ 410 (577)
..++++++..|.++..
T Consensus 82 ~~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 82 ELLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHhCCCcHHH
Confidence 8888888888877654
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=0.0022 Score=67.25 Aligned_cols=170 Identities=10% Similarity=0.023 Sum_probs=135.8
Q ss_pred CCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCC----------hHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccC
Q 037414 254 GSIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQ----------GKKALDLFPMMLSSRVLPNRITFVSLLYACSHTG 320 (577)
Q Consensus 254 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 320 (577)
..-++|.+.++++.+ .+...|+.--..+...|+ ++++++.++++.+.. +-+..+|..-.-.+.+.+
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 345678999998875 345678877777777777 899999999999864 335667777777778888
Q ss_pred --CHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhc--------
Q 037414 321 --LVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAG-RLDEALKLIESM-SVEK-DEGLWGALLGACRIH-------- 387 (577)
Q Consensus 321 --~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~-------- 387 (577)
+++++.+.++.+++. -+-+...|+.-.-.+.+.| .++++.+.++++ ...| |...|+.....+...
T Consensus 122 ~~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc
Confidence 779999999999864 2345777877777788888 899999999988 4455 677888877776653
Q ss_pred ------CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhH
Q 037414 388 ------KNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQD 426 (577)
Q Consensus 388 ------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 426 (577)
+.++++.+.++++++.+|.+..+|..+...+.+.++.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 557999999999999999999999999999999888655
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00016 Score=62.11 Aligned_cols=67 Identities=24% Similarity=0.164 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 037414 342 VKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNP 408 (577)
Q Consensus 342 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 408 (577)
...|..+..+|.+.|++++|...+++. .+.| +...|..+..++...|++++|...++++++.+|.++
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 457777888899999999999988877 3345 566888899999999999999999999999999987
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00012 Score=61.98 Aligned_cols=68 Identities=22% Similarity=0.194 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-C-------CCCCHh-HH----HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchh
Q 037414 344 HYTCMVDLLGRAGRLDEALKLIESM-S-------VEKDEG-LW----GALLGACRIHKNVDLAEMAAKSLLERQPQNPGH 410 (577)
Q Consensus 344 ~~~~li~~~~~~g~~~~A~~~~~~m-~-------~~p~~~-~~----~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 410 (577)
.|..+..++.+.|++++|+..+++. . +.|+.. .| .....++...|++++|+..|++++++.|.+...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 5666666666777777766666554 3 377654 88 889999999999999999999999999987654
Q ss_pred H
Q 037414 411 Y 411 (577)
Q Consensus 411 ~ 411 (577)
+
T Consensus 139 ~ 139 (159)
T 2hr2_A 139 T 139 (159)
T ss_dssp C
T ss_pred H
Confidence 3
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00032 Score=54.68 Aligned_cols=65 Identities=23% Similarity=0.173 Sum_probs=59.7
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhC
Q 037414 373 DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRR 437 (577)
Q Consensus 373 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 437 (577)
+...|..+...+...|++++|+..++++++.+|.++.+|..+..+|...|++++|.+.+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56688889999999999999999999999999999999999999999999999999999887653
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.0002 Score=70.07 Aligned_cols=151 Identities=7% Similarity=-0.007 Sum_probs=81.2
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHhccC--CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 037414 239 DVILGTAVIDMYAKCGSIDSAREIFDRMRQ--KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYAC 316 (577)
Q Consensus 239 ~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 316 (577)
....+..+...|.+.|++++|...|++..+ |+... +...|+.+++...+. ...|..+..+|
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~ 240 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence 456677888889999999999999998764 33221 222333444433221 13567788888
Q ss_pred hccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-hHHHHHHHH-HHhcCCHHHH
Q 037414 317 SHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEKDE-GLWGALLGA-CRIHKNVDLA 393 (577)
Q Consensus 317 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~-~~~~g~~~~a 393 (577)
.+.|++++|...++..++. -+.+...|..+..+|...|++++|.+.|++. .+.|+. ..+..+... ....+..+.+
T Consensus 241 ~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999988753 2235778888888999999999999999887 555643 355544444 3445667888
Q ss_pred HHHHHHHHhcCCCCc
Q 037414 394 EMAAKSLLERQPQNP 408 (577)
Q Consensus 394 ~~~~~~~~~~~p~~~ 408 (577)
...+.++++..|.++
T Consensus 319 ~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 319 KEMYKGIFKGKDEGG 333 (338)
T ss_dssp ---------------
T ss_pred HHHHHHhhCCCCCCC
Confidence 888999988887764
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00016 Score=57.17 Aligned_cols=91 Identities=11% Similarity=-0.062 Sum_probs=71.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------chhHH
Q 037414 341 DVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQN------PGHYV 412 (577)
Q Consensus 341 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 412 (577)
+...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++..|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4556677778888889999998888876 3334 56688888888999999999999999999999988 66677
Q ss_pred HHHHHHhccCChhHHHHHH
Q 037414 413 LLSNVYANAGRWQDVAKIR 431 (577)
Q Consensus 413 ~l~~~~~~~g~~~~A~~~~ 431 (577)
.+..++...|++++|.+.+
T Consensus 83 ~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHhHhhhHhHH
Confidence 7777777777766665444
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00044 Score=52.26 Aligned_cols=81 Identities=20% Similarity=0.224 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHh
Q 037414 342 VKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYA 419 (577)
Q Consensus 342 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 419 (577)
...+..+...|.+.|++++|.+.+++. ...| +...|..+...+...|++++|...++++++.+|.++..+..+..++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 456666777788888888888888776 2233 55678888888889999999999999999999988888888887776
Q ss_pred ccC
Q 037414 420 NAG 422 (577)
Q Consensus 420 ~~g 422 (577)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 543
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00023 Score=56.92 Aligned_cols=78 Identities=14% Similarity=0.077 Sum_probs=63.4
Q ss_pred HHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhC
Q 037414 360 EALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRR 437 (577)
Q Consensus 360 ~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 437 (577)
+|.+.|++. ...| +...|..+...+...|++++|+..++++++.+|.++..|..+..+|...|++++|...+++..+.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345555554 3345 56688888888999999999999999999999999889999999999999999999999887653
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00057 Score=69.84 Aligned_cols=129 Identities=6% Similarity=-0.034 Sum_probs=102.5
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC----------------cchHHHHHHHHhcCCChHHHHHHHHHHH
Q 037414 122 DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLD----------------SYTLPFVIRACRDRKDIVMGRLIHDIVL 185 (577)
Q Consensus 122 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----------------~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 185 (577)
....|..+...|.+.|++++|+..|++..+. .|+ ...|..+..++.+.+++++|...+++++
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 344 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKAL 344 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3456888888999999999999999998874 333 3678888888999999999999999999
Q ss_pred HcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHH-HHH
Q 037414 186 KSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSARE-IFD 264 (577)
Q Consensus 186 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~-~~~ 264 (577)
+.. +.+...+..+..+|...|++++|...|++..+.++ .+..++..+..++.+.|+.++|.+ .+.
T Consensus 345 ~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P-------------~~~~a~~~l~~~~~~~~~~~~a~~~~~~ 410 (457)
T 1kt0_A 345 GLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-------------QNKAARLQISMCQKKAKEHNERDRRIYA 410 (457)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----------------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-------------CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 875 55788899999999999999999999998876432 245677788888888888887753 444
Q ss_pred hc
Q 037414 265 RM 266 (577)
Q Consensus 265 ~~ 266 (577)
.|
T Consensus 411 ~~ 412 (457)
T 1kt0_A 411 NM 412 (457)
T ss_dssp HC
T ss_pred HH
Confidence 44
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00057 Score=70.00 Aligned_cols=114 Identities=13% Similarity=0.048 Sum_probs=86.4
Q ss_pred HHHHcCCHHHHHHHHHhC---------CCCCCH-hHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCCc---hhHH
Q 037414 351 LLGRAGRLDEALKLIESM---------SVEKDE-GLWGALLGACRIHKNVDLAEMAAKSLLER-----QPQNP---GHYV 412 (577)
Q Consensus 351 ~~~~~g~~~~A~~~~~~m---------~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~~---~~~~ 412 (577)
.+...|++++|+.++++. +..|+. .+++.|...|...|++++|+.+++++++. +|++| .+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 456789999999988765 223433 38999999999999999999999998753 56655 4688
Q ss_pred HHHHHHhccCChhHHHHHHHHHhhCCCccCCceeEEEECCEEEEEEecCCCCcccHHHHHHHHHHHHHHH
Q 037414 413 LLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLE 482 (577)
Q Consensus 413 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~ 482 (577)
.|..+|..+|++++|..++++..+.-.. +=...||...++..++.....+++
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~ 449 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLV------------------THGPSHPITKDLEAMRMQTEMELR 449 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHH------------------HhCCCChHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999877642111 111358888888877776665554
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0016 Score=64.33 Aligned_cols=118 Identities=8% Similarity=-0.046 Sum_probs=70.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhccC-------------------CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCC
Q 037414 241 ILGTAVIDMYAKCGSIDSAREIFDRMRQ-------------------KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR 301 (577)
Q Consensus 241 ~~~~~Li~~~~~~g~~~~A~~~~~~~~~-------------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 301 (577)
..+..+...|.+.|++++|...|++..+ .+...|..+..+|.+.|++++|++.+++.++..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 4567788999999999999999987754 123445555566666666666666666665532
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 037414 302 VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP-DVKHYTCMVDLLGRAGRLDEAL 362 (577)
Q Consensus 302 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~ 362 (577)
+-+...+..+..+|...|++++|...|+..++. .| +...+..+...+.+.++.+++.
T Consensus 304 -p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l---~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 304 -PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI---APEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 223445555555666666666666666655432 23 3344444444555555444443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0002 Score=60.42 Aligned_cols=85 Identities=11% Similarity=0.040 Sum_probs=64.3
Q ss_pred HcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCCCchhHHHHHHHHhcc
Q 037414 354 RAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKN----------VDLAEMAAKSLLERQPQNPGHYVLLSNVYANA 421 (577)
Q Consensus 354 ~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 421 (577)
+.+++++|.+.+++. ...| +...|..+..++...++ +++|+..|+++++++|++..+|..+.++|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 445566666666655 2334 44455555555555544 57999999999999999999999999999987
Q ss_pred C-----------ChhHHHHHHHHHhhCC
Q 037414 422 G-----------RWQDVAKIRDLMTRRR 438 (577)
Q Consensus 422 g-----------~~~~A~~~~~~m~~~g 438 (577)
| ++++|.+.|++..+.+
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 5 8999999999888654
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00063 Score=68.55 Aligned_cols=116 Identities=11% Similarity=0.131 Sum_probs=86.1
Q ss_pred HHHHHHcCCHHHHHHHHHhC------CCCC---C-HhHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCCc---hh
Q 037414 349 VDLLGRAGRLDEALKLIESM------SVEK---D-EGLWGALLGACRIHKNVDLAEMAAKSLLER-----QPQNP---GH 410 (577)
Q Consensus 349 i~~~~~~g~~~~A~~~~~~m------~~~p---~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~~---~~ 410 (577)
+..+.+.|++++|++++++. -+.| + ..+++.|...|...|++++|+.+++++++. +|++| .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44466788889998888765 1122 2 238888889999999999999999988753 45554 46
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHhhCCCccCCceeEEEECCEEEEEEecCCCCcccHHHHHHHHHHHHHHH
Q 037414 411 YVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLE 482 (577)
Q Consensus 411 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~ 482 (577)
++.|..+|..+|++++|..++++..+--.. +-...||...+++..+.+...+|+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRV------------------THGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHH------------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence 888999999999999999999877642110 112368999998888888877765
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0013 Score=51.64 Aligned_cols=66 Identities=15% Similarity=0.031 Sum_probs=61.0
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCC
Q 037414 373 DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 373 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
+...|..+...+...|++++|+..++++++..|.++..+..+..+|...|++++|.+.+++..+..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 456788888999999999999999999999999999999999999999999999999999988654
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0025 Score=48.70 Aligned_cols=68 Identities=15% Similarity=0.064 Sum_probs=59.3
Q ss_pred CCHhHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCCC
Q 037414 372 KDEGLWGALLGACRIHKN---VDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRL 439 (577)
Q Consensus 372 p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 439 (577)
+|...+..+..++...++ .++|..+++++++.+|+++.+...+...+.+.|++++|...|+.+.+...
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 466677777777765554 79999999999999999999999999999999999999999999987654
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.11 E-value=0.006 Score=50.55 Aligned_cols=85 Identities=7% Similarity=-0.084 Sum_probs=38.7
Q ss_pred HHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhc----cCC
Q 037414 352 LGRAGRLDEALKLIESMSVEKDEGLWGALLGACRI----HKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYAN----AGR 423 (577)
Q Consensus 352 ~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~ 423 (577)
|...+.+++|.++|++.-...+...+..|...|.. .++.++|...+++..+. .++.++..|..+|.. .++
T Consensus 35 y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d 112 (138)
T 1klx_A 35 SNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKN 112 (138)
T ss_dssp TCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCC
T ss_pred HHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcC
Confidence 33333344444444433111233344444444443 44555555555555444 233445555555555 455
Q ss_pred hhHHHHHHHHHhhCC
Q 037414 424 WQDVAKIRDLMTRRR 438 (577)
Q Consensus 424 ~~~A~~~~~~m~~~g 438 (577)
+++|.+.+++..+.|
T Consensus 113 ~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 113 EKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCC
Confidence 555555555554443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0028 Score=47.59 Aligned_cols=64 Identities=20% Similarity=0.217 Sum_probs=59.2
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhC
Q 037414 374 EGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRR 437 (577)
Q Consensus 374 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 437 (577)
...|..+...+...|++++|+..++++++..|.++..+..+..+|...|++++|.+.+++..+.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4577888888999999999999999999999999999999999999999999999999988764
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.87 E-value=0.095 Score=41.99 Aligned_cols=140 Identities=11% Similarity=0.081 Sum_probs=100.2
Q ss_pred HHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 037414 282 GYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEA 361 (577)
Q Consensus 282 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 361 (577)
.-.|..++..++..+.... .+..-|+.++.-....-+-+-..+.++.+-+-+ | ...+|++...
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiF----D----------is~C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYF----D----------LDKCQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGS----C----------GGGCSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhc----C----------cHhhhcHHHH
Confidence 3456667777777766643 244555656655555555555566666553222 2 2357777777
Q ss_pred HHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCCCc
Q 037414 362 LKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLK 440 (577)
Q Consensus 362 ~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 440 (577)
...+-.++ .+.......+......|.-+.-.++...++..++++++...-+.++|.+.|+..+|.+++.+.-++|++
T Consensus 81 i~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 81 VECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 77777775 345566777888899999999999999987788888999999999999999999999999999999974
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.003 Score=63.50 Aligned_cols=83 Identities=11% Similarity=0.056 Sum_probs=66.2
Q ss_pred HcCCHHHHHHHHHhC---------CCCCCH-hHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCCc---hhHHHHH
Q 037414 354 RAGRLDEALKLIESM---------SVEKDE-GLWGALLGACRIHKNVDLAEMAAKSLLER-----QPQNP---GHYVLLS 415 (577)
Q Consensus 354 ~~g~~~~A~~~~~~m---------~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~~---~~~~~l~ 415 (577)
..|++++|+.++++. +..|+. .+++.|..+|...|++++|+.+++++++. +|++| .+|+.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 357788888887764 223333 48899999999999999999999998753 45555 4688999
Q ss_pred HHHhccCChhHHHHHHHHHhh
Q 037414 416 NVYANAGRWQDVAKIRDLMTR 436 (577)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~m~~ 436 (577)
.+|..+|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999988764
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=96.86 E-value=0.019 Score=47.39 Aligned_cols=113 Identities=12% Similarity=-0.070 Sum_probs=87.8
Q ss_pred CChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHH----cCCHHH
Q 037414 285 GQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGR----AGRLDE 360 (577)
Q Consensus 285 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~ 360 (577)
+++++|++.|++..+.| .|+.. +-..|...+.+++|.+.|+...+. -+...+..|...|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46788999999988887 34433 666677777888899999988653 356777777788877 789999
Q ss_pred HHHHHHhCCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCC
Q 037414 361 ALKLIESMSVEKDEGLWGALLGACRI----HKNVDLAEMAAKSLLERQPQ 406 (577)
Q Consensus 361 A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~ 406 (577)
|.++|++.-..-+...+..|...|.. .++.++|...+++..+.+.+
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 129 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 129 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCH
Confidence 99999887323567778888888888 78999999999999887643
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0083 Score=60.28 Aligned_cols=93 Identities=14% Similarity=0.057 Sum_probs=72.7
Q ss_pred ccCCHHHHHHHHHHhhHhc--CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHhC---------CCCCCHh-HHHHHH
Q 037414 318 HTGLVEEGLRLFSSMWDDF--AVRPD----VKHYTCMVDLLGRAGRLDEALKLIESM---------SVEKDEG-LWGALL 381 (577)
Q Consensus 318 ~~g~~~~a~~~~~~m~~~~--~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~~~-~~~~ll 381 (577)
..|++++|..++++.++.. -+.|+ ..+++.|..+|...|++++|+.++++. +..|+.. +++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 4578899999888776532 12232 477889999999999999999998876 3345544 899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHh-----cCCCCchh
Q 037414 382 GACRIHKNVDLAEMAAKSLLE-----RQPQNPGH 410 (577)
Q Consensus 382 ~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~ 410 (577)
..|...|++++|+.+++++++ .+|++|.+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 999999999999999999876 36777654
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0015 Score=55.02 Aligned_cols=110 Identities=16% Similarity=0.160 Sum_probs=64.9
Q ss_pred CCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhc
Q 037414 320 GLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGR----------LDEALKLIESM-SVEK-DEGLWGALLGACRIH 387 (577)
Q Consensus 320 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~----------~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~ 387 (577)
+.+++|.+.++..++. -+.+...|..+..++...++ +++|+..|++. .+.| +...|..+..+|...
T Consensus 16 ~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 3445555555555432 11234445545455554443 34677666665 4455 344677777777665
Q ss_pred -----------CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCC
Q 037414 388 -----------KNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 388 -----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
|++++|+..|+++++.+|++. .|...+.. .++|.++.-.+...+
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~-~y~~al~~------~~ka~el~~~~~~~~ 148 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNT-HYLKSLEM------TAKAPQLHAEAYKQG 148 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH-HHHHHHHH------HHTHHHHHHHHHHSS
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCCCCH-HHHHHHHH------HHhCHhccCcccccc
Confidence 589999999999999999985 33333332 234556655555543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.77 E-value=0.12 Score=56.73 Aligned_cols=47 Identities=21% Similarity=0.214 Sum_probs=26.5
Q ss_pred HHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHhh
Q 037414 250 YAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMML 298 (577)
Q Consensus 250 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 298 (577)
+...|++++|.++.+.+ .+...|..+...+.+.|+++.|.+.|.++.
T Consensus 662 ~l~~~~~~~A~~~~~~~--~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDE--SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHTCHHHHHHHHTTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhhcCCHHHHHHHHHhh--CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 44556666665555444 233456666666666666666666666554
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.014 Score=58.61 Aligned_cols=101 Identities=12% Similarity=-0.047 Sum_probs=75.9
Q ss_pred HHHHHhccCCHHHHHHHHHHhhHhc--CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHhC---------CCCCCHh-
Q 037414 312 LLYACSHTGLVEEGLRLFSSMWDDF--AVRPD----VKHYTCMVDLLGRAGRLDEALKLIESM---------SVEKDEG- 375 (577)
Q Consensus 312 ll~a~~~~g~~~~a~~~~~~m~~~~--~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~~~- 375 (577)
.+..+.+.|++++|..++++.++.. -+.|+ ..+++.|..+|...|++++|+.++++. +..|+..
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 3455667788999999888886432 12232 467888888999999999999888776 3345443
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCchhHH
Q 037414 376 LWGALLGACRIHKNVDLAEMAAKSLLE-----RQPQNPGHYV 412 (577)
Q Consensus 376 ~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~~ 412 (577)
+++.|...|...|++++|+.+++++++ .+|++|.+-.
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 888999999999999999999999875 4687765443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0073 Score=47.88 Aligned_cols=63 Identities=16% Similarity=0.046 Sum_probs=33.5
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhh
Q 037414 270 NVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMW 333 (577)
Q Consensus 270 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 333 (577)
+...|..+...|...|++++|+..|++..+.. +.+...+..+..++...|+.++|...|+..+
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34455555555555566666666555555432 2233445555555555555555555555554
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0069 Score=46.82 Aligned_cols=60 Identities=15% Similarity=0.176 Sum_probs=34.6
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhh
Q 037414 239 DVILGTAVIDMYAKCGSIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMML 298 (577)
Q Consensus 239 ~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 298 (577)
+..++..+...|.+.|++++|...|++..+ .+...|..+..+|...|++++|.+.|++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455555666666666666666666665542 234455556666666666666666665544
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.55 E-value=0.13 Score=56.40 Aligned_cols=169 Identities=14% Similarity=0.075 Sum_probs=92.0
Q ss_pred HHHHhCCChhHHHH-HHHHHHHCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCH
Q 037414 131 GGFSKVADFINCFE-TFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVI 209 (577)
Q Consensus 131 ~~~~~~g~~~~A~~-~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 209 (577)
......+++++|.+ ++.. + |+......++..+.+.|..+.|.++.+. +. .-.......|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~-----i-~~~~~~~~~~~~l~~~~~~~~a~~~~~~-------~~-----~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPN-----V-EGKDSLTKIARFLEGQEYYEEALNISPD-------QD-----QKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGG-----C-CCHHHHHHHHHHHHHTTCHHHHHHHCCC-------HH-----HHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhc-----C-CchHHHHHHHHHHHhCCChHHheecCCC-------cc-----hheehhhhcCCH
Confidence 33445677777766 4311 1 1122236666667777777777655421 11 113345667888
Q ss_pred HHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHH
Q 037414 210 DDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKK 289 (577)
Q Consensus 210 ~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 289 (577)
++|.++.+.+. +...|..|..++.+.|+++.|.+.|..+.+ |..+...|...|+.+.
T Consensus 669 ~~A~~~~~~~~------------------~~~~W~~la~~al~~~~~~~A~~~y~~~~d-----~~~l~~l~~~~~~~~~ 725 (814)
T 3mkq_A 669 TLARDLLTDES------------------AEMKWRALGDASLQRFNFKLAIEAFTNAHD-----LESLFLLHSSFNNKEG 725 (814)
T ss_dssp HHHHHHHTTCC------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC-----HHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhC------------------cHhHHHHHHHHHHHcCCHHHHHHHHHHccC-----hhhhHHHHHHcCCHHH
Confidence 88888876654 345677788888888888888877776644 2333333444444443
Q ss_pred HHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Q 037414 290 ALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMS 369 (577)
Q Consensus 290 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 369 (577)
..++ .......|+.+.|...+... | -+...+++|.+.+++++|..+-+..+
T Consensus 726 ~~~~-------------------~~~a~~~~~~~~A~~~~~~~----g------~~~~a~~~~~~~~~~~~A~~lA~~~~ 776 (814)
T 3mkq_A 726 LVTL-------------------AKDAETTGKFNLAFNAYWIA----G------DIQGAKDLLIKSQRFSEAAFLGSTYG 776 (814)
T ss_dssp HHHH-------------------HHHHHHTTCHHHHHHHHHHH----T------CHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHH-------------------HHHHHHcCchHHHHHHHHHc----C------CHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 3333 23333344444444443322 1 01233444555566677776666653
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.45 E-value=0.1 Score=50.52 Aligned_cols=137 Identities=12% Similarity=-0.012 Sum_probs=63.6
Q ss_pred CChhhHHHHHHHHH--HcCC---hHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHhc---cC-----CHHHHHHHHHHhhH
Q 037414 269 KNVISWSAMIAAYG--YHGQ---GKKALDLFPMMLSSRVLPN-RITFVSLLYACSH---TG-----LVEEGLRLFSSMWD 334 (577)
Q Consensus 269 ~~~~~~~~li~~~~--~~g~---~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~---~g-----~~~~a~~~~~~m~~ 334 (577)
.+...|...+.+.. ..++ ..+|..+|++.++. .|+ ...+..+.-+|.- .+ ........+.....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 46677777776543 3333 46888889888874 555 2344433333320 00 00000111111100
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 037414 335 DFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQN 407 (577)
Q Consensus 335 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 407 (577)
....+.+...|.++.-.+...|++++|...+++. ...|+...|..+...+...|+.++|.+.+++++.++|..
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 0011233444444444444445555555555554 223444444444444555555555555555555555543
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0083 Score=45.94 Aligned_cols=62 Identities=21% Similarity=0.228 Sum_probs=34.2
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCC-CHh-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhH
Q 037414 350 DLLGRAGRLDEALKLIESM-SVEK-DEG-LWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHY 411 (577)
Q Consensus 350 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 411 (577)
..+.+.|++++|.+.|++. ...| +.. .|..+..++...|++++|...++++++.+|+++..+
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 3455556666666666554 2223 334 555555555666666666666666666666555444
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.019 Score=43.87 Aligned_cols=85 Identities=18% Similarity=0.153 Sum_probs=50.4
Q ss_pred HHHHHhccCCHHHHHHHHHHhhHhcCCCC-CHH-HHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHh-HHHHHHHHHHhc
Q 037414 312 LLYACSHTGLVEEGLRLFSSMWDDFAVRP-DVK-HYTCMVDLLGRAGRLDEALKLIESM-SVEKDEG-LWGALLGACRIH 387 (577)
Q Consensus 312 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~-~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~~~~~~ 387 (577)
....+...|++++|...++..++. .| +.. .+..+...|...|++++|.+.|++. ...|+.. .+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------- 74 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQT---EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-------- 74 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH---CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence 344566677777777777777643 23 345 6667777777777777777777766 3334322 2211
Q ss_pred CCHHHHHHHHHHHHhcCCCC
Q 037414 388 KNVDLAEMAAKSLLERQPQN 407 (577)
Q Consensus 388 g~~~~a~~~~~~~~~~~p~~ 407 (577)
+.+.++...+++..+.+|++
T Consensus 75 ~~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 75 KMVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp HHHHHHHHHHCCTTHHHHCC
T ss_pred HHHHHHHHHHHHHhccCccc
Confidence 34455555565555555443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=96.34 E-value=0.093 Score=54.81 Aligned_cols=172 Identities=9% Similarity=0.009 Sum_probs=121.4
Q ss_pred CChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCC----------HHHHHHHHhhCCCCChhHHHHHHhcCCCCcchh
Q 037414 172 KDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKV----------IDDARQLFDQMPTRDLVTWTVMIGANKFLLDVI 241 (577)
Q Consensus 172 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~ 241 (577)
...++|.+.++.+++.. +-+..+|+.--.++.+.|+ ++++.+.++++.+.++- +..
T Consensus 43 ~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-------------~y~ 108 (567)
T 1dce_A 43 ELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-------------SYG 108 (567)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-------------CHH
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-------------CHH
Confidence 33456777777777765 4455666666556655555 88888888887654332 445
Q ss_pred hHHHHHHHHHhcC--CHHHHHHHHHhccC---CChhhHHHHHHHHHHcC-ChHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 037414 242 LGTAVIDMYAKCG--SIDSAREIFDRMRQ---KNVISWSAMIAAYGYHG-QGKKALDLFPMMLSSRVLPNRITFVSLLYA 315 (577)
Q Consensus 242 ~~~~Li~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 315 (577)
+|+--...+.+.| +++++.+.++++.+ +|...|+--...+.+.| .++++++.++++.+.. +-|...|+.....
T Consensus 109 aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~l 187 (567)
T 1dce_A 109 TWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCL 187 (567)
T ss_dssp HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHH
Confidence 6666677777888 77999999999875 56778888888888888 8999999999998864 3366677665555
Q ss_pred Hhcc--------------CCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHH
Q 037414 316 CSHT--------------GLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDE 360 (577)
Q Consensus 316 ~~~~--------------g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 360 (577)
+.+. +.++++.+.+...+.. -+-+...|..+-..+.+.++.++
T Consensus 188 l~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~--~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 188 LPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH--CSSCSHHHHHHHHHHSCCCCCSC
T ss_pred HHhhcccccccccccccHHHHHHHHHHHHHHHhh--CCCCccHHHHHHHHHhcCCCccc
Confidence 5442 5578888888888753 22346777777777777776444
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.29 E-value=0.027 Score=46.84 Aligned_cols=65 Identities=8% Similarity=-0.047 Sum_probs=51.5
Q ss_pred CCHhHHHHHHHHHHhcC---CHHHHHHHHHHHHhcC-C-CCchhHHHHHHHHhccCChhHHHHHHHHHhh
Q 037414 372 KDEGLWGALLGACRIHK---NVDLAEMAAKSLLERQ-P-QNPGHYVLLSNVYANAGRWQDVAKIRDLMTR 436 (577)
Q Consensus 372 p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 436 (577)
++..+.-.+..++.+.+ +.++++.+++.+.+.+ | .+...+..|.-+|.+.|++++|.+.++.+.+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 56666667777777777 5668888888888887 6 3567788888888999999999999888875
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.18 E-value=0.22 Score=42.47 Aligned_cols=130 Identities=14% Similarity=0.123 Sum_probs=93.2
Q ss_pred HHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 037414 247 IDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGL 326 (577)
Q Consensus 247 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 326 (577)
.+...++|+++.|.++.+.+ .+...|..+.......|+++-|.+.|.+... |..+.-.|...|+.+.-.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 34566899999999998877 5677899999999999999999999998764 344555566678877766
Q ss_pred HHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037414 327 RLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSL 400 (577)
Q Consensus 327 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 400 (577)
++-+....+ | -++.....+.-.|+++++.+++.+.+.-|... .....+|..+.|.++.+.+
T Consensus 81 kla~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~------~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 81 KMQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAY------AVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHH------HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHH------HHHHHcCcHHHHHHHHHHh
Confidence 655544322 2 23445556667899999999999887433322 2234467777787776655
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=95.71 E-value=0.12 Score=49.85 Aligned_cols=62 Identities=10% Similarity=0.109 Sum_probs=31.2
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhh
Q 037414 270 NVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMW 333 (577)
Q Consensus 270 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 333 (577)
+...|.++...+...|++++|...++++...+ |+...|..+-..+.-.|+.++|.+.+++..
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Al 337 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAF 337 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34444444444444455555555555555543 444444444444555555555555555544
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.57 E-value=0.061 Score=49.89 Aligned_cols=87 Identities=13% Similarity=0.177 Sum_probs=69.7
Q ss_pred HHHHHHHHHhC-CCCCC---HhHHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCCC-chhHHHHHHHHhcc-CChhH
Q 037414 358 LDEALKLIESM-SVEKD---EGLWGALLGACRI-----HKNVDLAEMAAKSLLERQPQN-PGHYVLLSNVYANA-GRWQD 426 (577)
Q Consensus 358 ~~~A~~~~~~m-~~~p~---~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 426 (577)
..+|...+++. .+.|+ ...|..|...|.. .|+.++|++.|+++++++|+. ..+++.....++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 45566666655 55666 4578888888888 599999999999999999975 99999999999884 99999
Q ss_pred HHHHHHHHhhCCCccCCc
Q 037414 427 VAKIRDLMTRRRLKKIPG 444 (577)
Q Consensus 427 A~~~~~~m~~~g~~~~~~ 444 (577)
+.+.+++.........|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999998877654453
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.41 E-value=0.093 Score=39.74 Aligned_cols=68 Identities=18% Similarity=0.090 Sum_probs=49.4
Q ss_pred CCHHHHHHHHHHHHHcCC---HHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 037414 340 PDVKHYTCMVDLLGRAGR---LDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQN 407 (577)
Q Consensus 340 p~~~~~~~li~~~~~~g~---~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 407 (577)
.+...+..+..++...++ .++|..++++. ...| +...+..+...+...|++++|+..++++++.+|++
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 456666777776654444 68888888776 4455 44566777777888888888888888888888873
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.37 E-value=0.84 Score=36.64 Aligned_cols=148 Identities=14% Similarity=0.022 Sum_probs=94.6
Q ss_pred hHHHHHHH--HhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCC-ChhHHHHHHhcCCC
Q 037414 160 TLPFVIRA--CRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTVMIGANKF 236 (577)
Q Consensus 160 t~~~ll~~--~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~i~~~g~ 236 (577)
+...|+.+ ..-.|.++++.++..+..++. +..-||..|--....-+-+-..++++.+-.- |
T Consensus 7 l~kkLmeAK~~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFD------------- 70 (172)
T 1wy6_A 7 IIRKLMDAKKFLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFD------------- 70 (172)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSC-------------
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcC-------------
Confidence 44455555 445688888888888887753 4444555554444445555555555554321 1
Q ss_pred CcchhhHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 037414 237 LLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYAC 316 (577)
Q Consensus 237 ~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 316 (577)
...||++......+-.+- .+....+..++.+...|.-++-.+++..+.. +.+|++.....+..||
T Consensus 71 -------------is~C~NlKrVi~C~~~~n-~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay 135 (172)
T 1wy6_A 71 -------------LDKCQNLKSVVECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANAL 135 (172)
T ss_dssp -------------GGGCSCTHHHHHHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHH
T ss_pred -------------cHhhhcHHHHHHHHHHhc-chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHH
Confidence 123444444444444432 2344556677888888988888888888644 3577788888888899
Q ss_pred hccCCHHHHHHHHHHhhHhcCCC
Q 037414 317 SHTGLVEEGLRLFSSMWDDFAVR 339 (577)
Q Consensus 317 ~~~g~~~~a~~~~~~m~~~~~~~ 339 (577)
.+.|+..++.+++.++.++ |++
T Consensus 136 ~Klg~~r~a~eLl~~AC~k-G~k 157 (172)
T 1wy6_A 136 RRVGDERDATTLLIEACKK-GEK 157 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHT-TCH
T ss_pred HHhcchhhHHHHHHHHHHh-hhH
Confidence 9999999999998888765 653
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.32 E-value=0.12 Score=39.95 Aligned_cols=74 Identities=15% Similarity=0.049 Sum_probs=53.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhC-----C----CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhH
Q 037414 341 DVKHYTCMVDLLGRAGRLDEALKLIESM-----S----VEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHY 411 (577)
Q Consensus 341 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-----~----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 411 (577)
+..-+-.|...+.+.|+++.|..+|+.. + -.+...++..|..++.+.|+++.|...++++++..|+++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 3444456666677777777777777664 1 012455788888999999999999999999999999987664
Q ss_pred HHH
Q 037414 412 VLL 414 (577)
Q Consensus 412 ~~l 414 (577)
..+
T Consensus 84 ~n~ 86 (104)
T 2v5f_A 84 GNL 86 (104)
T ss_dssp HHH
T ss_pred hhH
Confidence 443
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.29 E-value=0.9 Score=38.68 Aligned_cols=130 Identities=16% Similarity=0.153 Sum_probs=93.4
Q ss_pred HHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHH
Q 037414 201 DMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAA 280 (577)
Q Consensus 201 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 280 (577)
+...++|+++.|.++.+++. +...|..|.+.....|+++-|.+.|....+ +..+.-.
T Consensus 13 ~LAL~lg~l~~A~e~a~~l~------------------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~~~L~~L 69 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKLN------------------DSITWERLIQEALAQGNASLAEMIYQTQHS-----FDKLSFL 69 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHHC------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----HHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHhC------------------CHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----HHHHHHH
Confidence 45567999999999987763 455788899999999999999999999875 4555666
Q ss_pred HHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHH
Q 037414 281 YGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDE 360 (577)
Q Consensus 281 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 360 (577)
|.-.|+.++-.++-+.....| + ++.....+...|+++++.++|.+. |.-|.... .....|..+.
T Consensus 70 y~~tg~~e~L~kla~iA~~~g---~---~n~af~~~l~lGdv~~~i~lL~~~----~r~~eA~~------~A~t~g~~~~ 133 (177)
T 3mkq_B 70 YLVTGDVNKLSKMQNIAQTRE---D---FGSMLLNTFYNNSTKERSSIFAEG----GSLPLAYA------VAKANGDEAA 133 (177)
T ss_dssp HHHHTCHHHHHHHHHHHHHTT---C---HHHHHHHHHHHTCHHHHHHHHHHT----TCHHHHHH------HHHHTTCHHH
T ss_pred HHHhCCHHHHHHHHHHHHHCc---c---HHHHHHHHHHcCCHHHHHHHHHHC----CChHHHHH------HHHHcCcHHH
Confidence 777888877776666555544 1 344445566789999999999766 33232211 1223577888
Q ss_pred HHHHHHhCC
Q 037414 361 ALKLIESMS 369 (577)
Q Consensus 361 A~~~~~~m~ 369 (577)
|.++.++++
T Consensus 134 a~~~~~~~~ 142 (177)
T 3mkq_B 134 ASAFLEQAE 142 (177)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhC
Confidence 888888874
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=94.39 E-value=0.0046 Score=61.19 Aligned_cols=143 Identities=11% Similarity=0.100 Sum_probs=85.7
Q ss_pred ccchhhHHHhhccCCCCCCCCCcccCccCCCCCCCCCCCChhhHHHHHHhccC---hHHHHHHHHHHHHcCCCCCHHHHH
Q 037414 20 FSSSTTAAIALEPHGHEQNPMNPRVPMQMGPDCQFTRSVDPKFFISSLLSCRN---IFQIRQVHAQIVAGGTLTNLIVAN 96 (577)
Q Consensus 20 ~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~a~~~---~~~a~~~~~~~~~~g~~~~~~~~~ 96 (577)
..-|..+..+....|+..+|++-|-+.. |+..|..++.++.+ .++....+...++. ..++.+=+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA~-----------Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDt 120 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKAD-----------DPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVET 120 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCCS-----------CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhCC-----------ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHH
Confidence 3458889999999999999999876664 34557778888876 44444444433333 34556668
Q ss_pred HHHHHHHcCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHC--------------------CCCC
Q 037414 97 KLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRC--------------------GMQL 156 (577)
Q Consensus 97 ~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------------------g~~p 156 (577)
.|+-+|++.+++.+-.+++. .||+.--..+..-|...|.++.|.-+|..+... .-.-
T Consensus 121 eLi~ayAk~~rL~elEefl~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAn 197 (624)
T 3lvg_A 121 ELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKAN 197 (624)
T ss_dssp HHHHHHHTSCSSSTTTSTTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCC
T ss_pred HHHHHHHhhCcHHHHHHHHc---CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 89999999998776444322 133333444444444444444444443332110 0012
Q ss_pred CcchHHHHHHHHhcCCChHHHH
Q 037414 157 DSYTLPFVIRACRDRKDIVMGR 178 (577)
Q Consensus 157 ~~~t~~~ll~~~~~~~~~~~a~ 178 (577)
+..||-.+-.+|...+.+..|.
T Consensus 198 s~ktWKeV~~ACvd~~EfrLAq 219 (624)
T 3lvg_A 198 STRTWKEVCFACVDGKEFRLAQ 219 (624)
T ss_dssp SSCSHHHHTHHHHHSCTTTTTT
T ss_pred ChhHHHHHHHHHhCchHHHHHH
Confidence 5566766666776666665543
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.12 E-value=0.24 Score=41.13 Aligned_cols=87 Identities=17% Similarity=0.053 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHhC-CCC-C--CHhHHHHHHHHHHhcCCHHHHH
Q 037414 322 VEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAG---RLDEALKLIESM-SVE-K--DEGLWGALLGACRIHKNVDLAE 394 (577)
Q Consensus 322 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m-~~~-p--~~~~~~~ll~~~~~~g~~~~a~ 394 (577)
+..+++.|.+..+. + .++..+...+.-++.+.+ +.+++..+++.. ... | +...+-.|.-++.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 34444445444332 2 255555555666666666 445666666655 112 3 2335555667789999999999
Q ss_pred HHHHHHHhcCCCCchh
Q 037414 395 MAAKSLLERQPQNPGH 410 (577)
Q Consensus 395 ~~~~~~~~~~p~~~~~ 410 (577)
+.++.+++.+|++..+
T Consensus 92 ~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 92 KYVRGLLQTEPQNNQA 107 (152)
T ss_dssp HHHHHHHHHCTTCHHH
T ss_pred HHHHHHHhcCCCCHHH
Confidence 9999999999988643
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=93.56 E-value=0.39 Score=38.33 Aligned_cols=27 Identities=26% Similarity=0.206 Sum_probs=13.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 037414 382 GACRIHKNVDLAEMAAKSLLERQPQNP 408 (577)
Q Consensus 382 ~~~~~~g~~~~a~~~~~~~~~~~p~~~ 408 (577)
-++.+.|+++.|.+.++.+++.+|.+.
T Consensus 82 vg~yklg~Y~~A~~~~~~lL~~eP~n~ 108 (126)
T 1nzn_A 82 VGNYRLKEYEKALKYVRGLLQTEPQNN 108 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHhhhHHHHHHHHHHHHHhCCCCH
Confidence 344455555555555555555555443
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=92.70 E-value=0.54 Score=36.17 Aligned_cols=65 Identities=9% Similarity=-0.055 Sum_probs=54.1
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-------CCCchhHHHHHHHHhccCChhHHHHHHHHHhhC
Q 037414 373 DEGLWGALLGACRIHKNVDLAEMAAKSLLERQ-------PQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRR 437 (577)
Q Consensus 373 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 437 (577)
+..-+-.|...+...|+++.|...++.+++.. +..+..+..|..+|.+.|++++|...+++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 34445678888999999999999999998753 234567899999999999999999999988753
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=91.66 E-value=4.6 Score=32.78 Aligned_cols=65 Identities=6% Similarity=-0.077 Sum_probs=41.9
Q ss_pred CCHhHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCC-CchhHHHHHHHHhccCChhHHHHHHHHHhh
Q 037414 372 KDEGLWGALLGACRIHKN---VDLAEMAAKSLLERQPQ-NPGHYVLLSNVYANAGRWQDVAKIRDLMTR 436 (577)
Q Consensus 372 p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 436 (577)
|+..+--.+..++.+..+ ..+++.+++.+.+..|. .......|+-+|.+.|++++|.+..+.+.+
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 444444444445555543 45677777777776664 334556677778888888888888877765
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=91.65 E-value=0.015 Score=57.55 Aligned_cols=260 Identities=13% Similarity=0.117 Sum_probs=136.3
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcC
Q 037414 92 LIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDR 171 (577)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 171 (577)
+.+|+.|..++.+.+++.+|+.-| ++..|+..|..+|.+..+.|.+++-+..+.-.++..- ++..=+.|+-+|++.
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayAk~ 129 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAKT 129 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHHTS
T ss_pred ccHHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHHhh
Confidence 345555666666666666555544 2233455555666666666666665555543333211 222234455556665
Q ss_pred CChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHH
Q 037414 172 KDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYA 251 (577)
Q Consensus 172 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~ 251 (577)
+++.+-++++. .|+..-.....+-+...|.++.|.-+|..+..-. -|..++.
T Consensus 130 ~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~a---------------------kLAstLV 181 (624)
T 3lvg_A 130 NRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFG---------------------RLASTLV 181 (624)
T ss_dssp CSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCT---------------------TTSSSSS
T ss_pred CcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHH---------------------HHHHHHH
Confidence 55544333321 2333333444555555555555555555544311 1222233
Q ss_pred hcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 037414 252 KCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSS 331 (577)
Q Consensus 252 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 331 (577)
+.|++..|.+.-++ ..++.||-.+-.+|...+.+.-|.-.--.++- .||. ...++..|...|.+++-+.+++.
T Consensus 182 ~L~~yq~AVdaArK--Ans~ktWKeV~~ACvd~~EfrLAqicGLniIv---hade--L~elv~~YE~~G~f~ELIsLlEa 254 (624)
T 3lvg_A 182 HLGEYQAAVDGARK--ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HADE--LEELINYYQDRGYFEELITMLEA 254 (624)
T ss_dssp SCSGGGSSTTTTTT--CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSSC--CSGGGSSSSTTCCCTTSTTTHHH
T ss_pred HHHHHHHHHHHHHh--cCChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHHH--HHHHHHHHHhCCCHHHHHHHHHH
Confidence 33443333222111 14667888888888888887766554444432 2221 22356667778888887777776
Q ss_pred hhHhcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHhC----CCC------CCHhHHHHHHHHHHhcCCHHHHH
Q 037414 332 MWDDFAVR-PDVKHYTCMVDLLGRAGRLDEALKLIESM----SVE------KDEGLWGALLGACRIHKNVDLAE 394 (577)
Q Consensus 332 m~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~------p~~~~~~~ll~~~~~~g~~~~a~ 394 (577)
-+ |+. .....++-|.-.|++- ++++..+-++.. .+. -....|.-++-.|....+++.|.
T Consensus 255 gl---glErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 255 AL---GLERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HT---TSTTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred Hh---CCCchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 64 332 3466677777777664 344444444332 211 13346777777777777776554
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=90.56 E-value=2.7 Score=33.50 Aligned_cols=87 Identities=13% Similarity=0.081 Sum_probs=51.4
Q ss_pred cCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHH---HHHHHHHhhHhcCCCC--CHHHHHHHHHHHHHcCCH
Q 037414 284 HGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEE---GLRLFSSMWDDFAVRP--DVKHYTCMVDLLGRAGRL 358 (577)
Q Consensus 284 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~---a~~~~~~m~~~~~~~p--~~~~~~~li~~~~~~g~~ 358 (577)
......+.+-|.+....|. |+..+-..+..++.++..... ++.+++.+.+. + .| .....-.|.-++.+.|++
T Consensus 14 ~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~-~-~p~~~Rd~lY~LAvg~yklg~Y 90 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEY 90 (126)
T ss_dssp HHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-S-CHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CcchHHHHHHHHHHHHHHhhhH
Confidence 3344555566665555443 555555556667777665544 77777777643 1 13 223333455567788888
Q ss_pred HHHHHHHHhC-CCCCC
Q 037414 359 DEALKLIESM-SVEKD 373 (577)
Q Consensus 359 ~~A~~~~~~m-~~~p~ 373 (577)
++|.+.++.+ .++|+
T Consensus 91 ~~A~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 91 EKALKYVRGLLQTEPQ 106 (126)
T ss_dssp HHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhCCC
Confidence 8888877776 44553
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=89.94 E-value=21 Score=37.31 Aligned_cols=323 Identities=8% Similarity=-0.048 Sum_probs=172.6
Q ss_pred hccCCCCCCCCCcccCccCCCCCCCCCCCChhhHHHHHHhccChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHcCCCh
Q 037414 30 LEPHGHEQNPMNPRVPMQMGPDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGG-TLTNLIVANKLLYIYALHKAL 108 (577)
Q Consensus 30 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~a~~~~~~a~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~ 108 (577)
..+.|++..+.++...+... .. .+...|..+....... ...++-..+.+.. .+.....-+.-+..+++.+++
T Consensus 16 a~~~~~~~~~~~l~~~l~~~-----pL-~~yl~y~~l~~~l~~~-~~~ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w 88 (618)
T 1qsa_A 16 AWDNRQMDVVEQMMPGLKDY-----PL-YPYLEYRQITDDLMNQ-PAVTVTNFVRANPTLPPARTLQSRFVNELARREDW 88 (618)
T ss_dssp HHHTTCHHHHHHHSGGGTTS-----TT-HHHHHHHHHHHTGGGC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHCCCHHHHHHHHHhhcCC-----Cc-HHHHHHHHHHhCcccC-CHHHHHHHHHHCCCChhHHHHHHHHHHHHHhCCCH
Confidence 34456666666665555322 12 2334566666554431 1125555555542 233334445567777788888
Q ss_pred HHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHcC
Q 037414 109 TDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSG 188 (577)
Q Consensus 109 ~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 188 (577)
.....++.. +..+...--....+....|+..+|....+.+-..|- ........++..+.+.|.+.
T Consensus 89 ~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~~~~~g~lt------------- 153 (618)
T 1qsa_A 89 RGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFSVWRASGKQD------------- 153 (618)
T ss_dssp HHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHHHHHHTTCSC-------------
T ss_pred HHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHCCCCC-------------
Confidence 888886665 322444344455667777887777776666655542 23334445555444333332
Q ss_pred CCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC
Q 037414 189 LDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ 268 (577)
Q Consensus 189 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~ 268 (577)
+..++. -+......|+...|..+...+... .......++..+.+-..+. ...... .
T Consensus 154 ---~~~~~~-R~~~al~~~~~~~a~~l~~~l~~~----------------~~~~a~~~~al~~~p~~~~---~~~~~~-~ 209 (618)
T 1qsa_A 154 ---PLAYLE-RIRLAMKAGNTGLVTVLAGQMPAD----------------YQTIASAIISLANNPNTVL---TFARTT-G 209 (618)
T ss_dssp ---HHHHHH-HHHHHHHTTCHHHHHHHHHTCCGG----------------GHHHHHHHHHHHHCGGGHH---HHHHHS-C
T ss_pred ---HHHHHH-HHHHHHHCCCHHHHHHHHHhCCHH----------------HHHHHHHHHHHHhChHhHH---HHHhcc-C
Confidence 112222 234555677888888887766321 1123344454444433332 222222 2
Q ss_pred CChhh---HHHHHHHHHHcCChHHHHHHHHHhhhCC-CCCCHH--HHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCH
Q 037414 269 KNVIS---WSAMIAAYGYHGQGKKALDLFPMMLSSR-VLPNRI--TFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDV 342 (577)
Q Consensus 269 ~~~~~---~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~ 342 (577)
++... +...+.-+.+ .+.+.|..+|......+ ..+... ....+.......+...++...+...... .++.
T Consensus 210 ~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~ 285 (618)
T 1qsa_A 210 ATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQST 285 (618)
T ss_dssp CCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCH
T ss_pred CChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCCh
Confidence 22221 1122333333 37899999998886543 322222 2222333344445344555566655322 2343
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhCCCCC-CHhH-HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037414 343 KHYTCMVDLLGRAGRLDEALKLIESMSVEK-DEGL-WGALLGACRIHKNVDLAEMAAKSLLE 402 (577)
Q Consensus 343 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~p-~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~ 402 (577)
....-.+....+.|+++.|.+.|+.|+..+ +..- .-=+..+....|+.++|..+++.+.+
T Consensus 286 ~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 286 SLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 334444455557899999999999996433 2121 12234466788999999999999875
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=89.85 E-value=1.1 Score=36.73 Aligned_cols=51 Identities=8% Similarity=-0.057 Sum_probs=31.2
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCC
Q 037414 388 KNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 388 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
+|.++|.++|+.+++....-+..|...+.--.++|+...|.+++..-...+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 566667777776666533334455555555566777777777776665543
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.67 E-value=4 Score=43.60 Aligned_cols=54 Identities=9% Similarity=-0.018 Sum_probs=50.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHh
Q 037414 382 GACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMT 435 (577)
Q Consensus 382 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 435 (577)
.-|...|+++.|+.+.+++...-|.+-.+|..|+.+|...|+|+.|+-.++.+.
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 336778999999999999999999999999999999999999999999999885
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=88.59 E-value=2.5 Score=34.77 Aligned_cols=59 Identities=12% Similarity=-0.025 Sum_probs=43.7
Q ss_pred cCCHHHHHHHHHhC-CC-CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHH
Q 037414 355 AGRLDEALKLIESM-SV-EKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVL 413 (577)
Q Consensus 355 ~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 413 (577)
.++.++|.++|+.+ .+ +.=...|-....--.++|+...|.+++.+.+.+.|.+......
T Consensus 73 i~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~ 133 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEI 133 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHH
Confidence 36777788877776 11 1126678777777889999999999999999999886554433
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.63 E-value=15 Score=36.71 Aligned_cols=181 Identities=9% Similarity=0.148 Sum_probs=115.7
Q ss_pred CCHHHHHHHHHhccC-----CC----hhhHHHHHHHHHHcCChHHHHHHHHHhhhC-CCCCCHHHHHHHHHHH----hcc
Q 037414 254 GSIDSAREIFDRMRQ-----KN----VISWSAMIAAYGYHGQGKKALDLFPMMLSS-RVLPNRITFVSLLYAC----SHT 319 (577)
Q Consensus 254 g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~----~~~ 319 (577)
|++++|.+.+-.+.+ .| ......++..|...|+++...+.+.-+... |..+...+ .++..+ ...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~--~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQ--YMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHH--HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHH--HHHHHHHHHHhcC
Confidence 678888877755542 22 344677889999999999998877766543 44443332 333322 222
Q ss_pred CCHH--HHHHHHHHhhH--hcCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHhCC-----CCCC---HhHHHHHHHHH
Q 037414 320 GLVE--EGLRLFSSMWD--DFAVRP---DVKHYTCMVDLLGRAGRLDEALKLIESMS-----VEKD---EGLWGALLGAC 384 (577)
Q Consensus 320 g~~~--~a~~~~~~m~~--~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~p~---~~~~~~ll~~~ 384 (577)
...+ .-..+.+.... ...+-. .......|.+.|...|++.+|.+++..+. ..+. ...+..-++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 3222 22222222210 101111 12344678889999999999999999872 1111 23666777889
Q ss_pred HhcCCHHHHHHHHHHHHhc---CCCCc----hhHHHHHHHHhccCChhHHHHHHHHHhh
Q 037414 385 RIHKNVDLAEMAAKSLLER---QPQNP----GHYVLLSNVYANAGRWQDVAKIRDLMTR 436 (577)
Q Consensus 385 ~~~g~~~~a~~~~~~~~~~---~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 436 (577)
...+|+..|..+.+++... .++++ ..|...+..+...++|.+|.+.|.+.-+
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 9999999999999987532 23332 4677888889999999999988877754
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.10 E-value=4.9 Score=42.91 Aligned_cols=126 Identities=11% Similarity=0.079 Sum_probs=82.8
Q ss_pred HHHHHHHHHHcCCC-hHHHHHHHhcCCCCCcc--h--HHHHHHHHHhCC-ChhHHHHHHHHHHHC------CCCCCcc--
Q 037414 94 VANKLLYIYALHKA-LTDAHALFNGMKERDSV--S--WSVMVGGFSKVA-DFINCFETFREFIRC------GMQLDSY-- 159 (577)
Q Consensus 94 ~~~~li~~~~~~g~-~~~A~~~f~~m~~~~~~--~--~~~li~~~~~~g-~~~~A~~~~~~m~~~------g~~p~~~-- 159 (577)
....|+..+.-.|+ .+.|..+|+++...++. . ...+|..+.+.+ +--+|++++.+..+. ...+...
T Consensus 250 L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 250 LMYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 34455555555666 57899999988654432 1 223333333333 233566665555421 1222211
Q ss_pred ---------hHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCC
Q 037414 160 ---------TLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMP 220 (577)
Q Consensus 160 ---------t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 220 (577)
....-...|...|+++.|..+-++.+... |.+-.+|..|..+|.+.|+++.|+-.++.++
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 12222344677899999999999998874 6678999999999999999999999999997
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=87.03 E-value=1.9 Score=42.36 Aligned_cols=68 Identities=13% Similarity=0.012 Sum_probs=55.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhh-----CCCccCCc
Q 037414 377 WGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTR-----RRLKKIPG 444 (577)
Q Consensus 377 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~~~~~ 444 (577)
...++..+...|+.+++...++.+...+|-+...|..|+.+|.+.|+..+|.+.|+...+ .|+.|.|.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 445666777889999999999999889998888999999999999999999988887654 37766553
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=86.69 E-value=2.3 Score=39.39 Aligned_cols=90 Identities=11% Similarity=0.054 Sum_probs=67.0
Q ss_pred hHHHHHHHhcCCC--C---CcchHHHHHHHHHhC-----CChhHHHHHHHHHHHCCCCC--CcchHHHHHHHHhcC-CCh
Q 037414 108 LTDAHALFNGMKE--R---DSVSWSVMVGGFSKV-----ADFINCFETFREFIRCGMQL--DSYTLPFVIRACRDR-KDI 174 (577)
Q Consensus 108 ~~~A~~~f~~m~~--~---~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~~~~~~-~~~ 174 (577)
...|...+++..+ | +-..|..|...|.+. |+.++|.+.|++.++. .| +..++......++.. ++.
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--nP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--CSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--CCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--CCCCCchHHHHHHHHHHHhcCCH
Confidence 3456666666544 3 244788999999984 9999999999999984 55 366777777777774 999
Q ss_pred HHHHHHHHHHHHcCCC--CcHHHHHHH
Q 037414 175 VMGRLIHDIVLKSGLD--IDQFVCAAL 199 (577)
Q Consensus 175 ~~a~~~~~~~~~~g~~--~~~~~~~~l 199 (577)
+++.+.+++.+..... |+....+.+
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 9999999999987655 665555544
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=86.62 E-value=4.3 Score=30.66 Aligned_cols=48 Identities=15% Similarity=0.174 Sum_probs=38.0
Q ss_pred CCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 037414 368 MSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLS 415 (577)
Q Consensus 368 m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 415 (577)
+.+-|++.+..+.+.+|++.+|+..|.++++-+...-.+....|-.++
T Consensus 39 ~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l 86 (109)
T 1v54_E 39 YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 86 (109)
T ss_dssp SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 356789999999999999999999999999988776544445565554
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=86.55 E-value=8.2 Score=28.96 Aligned_cols=60 Identities=17% Similarity=0.087 Sum_probs=36.8
Q ss_pred HHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHH
Q 037414 248 DMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFV 310 (577)
Q Consensus 248 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 310 (577)
..+.+.|++++|..+.+.+.-||...|-++-. .+.|..+++..-+.++..+| .|....|.
T Consensus 47 sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 47 SSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS-DPALADFA 106 (115)
T ss_dssp HHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS-SHHHHHHH
T ss_pred HHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 34556677777777777776777777766544 34566666666666666654 44444443
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=86.36 E-value=8.8 Score=28.84 Aligned_cols=59 Identities=19% Similarity=0.206 Sum_probs=35.5
Q ss_pred HHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHH
Q 037414 248 DMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITF 309 (577)
Q Consensus 248 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 309 (577)
..+.+.|++++|..+.+.+.-||...|-++-.. +.|..+++..-+.++..+| .|....|
T Consensus 48 sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~sg-~p~~q~F 106 (116)
T 2p58_C 48 SSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLARSQ-DPRIQTF 106 (116)
T ss_dssp HHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTTCC-CHHHHHH
T ss_pred HHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 345566777777777777666777777665443 4566666666666666554 3444444
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.85 E-value=25 Score=34.95 Aligned_cols=96 Identities=13% Similarity=0.095 Sum_probs=65.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhccC----C-C----hhhHHHHHHHHHHcCChHHHHHHHHHhhh----CCCCCCH-
Q 037414 241 ILGTAVIDMYAKCGSIDSAREIFDRMRQ----K-N----VISWSAMIAAYGYHGQGKKALDLFPMMLS----SRVLPNR- 306 (577)
Q Consensus 241 ~~~~~Li~~~~~~g~~~~A~~~~~~~~~----~-~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~~- 306 (577)
.+...|...|...|++.+|..++.++.. . + +..|..-+..|...+++.+|..++++... ....|+.
T Consensus 138 rl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk 217 (445)
T 4b4t_P 138 RVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLK 217 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHH
Confidence 3446788889999999999999888752 1 1 23566677888888999998888887642 2222322
Q ss_pred -HHHHHHHHHHhccCCHHHHHHHHHHhhHhc
Q 037414 307 -ITFVSLLYACSHTGLVEEGLRLFSSMWDDF 336 (577)
Q Consensus 307 -~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 336 (577)
..+...+..+...+++.+|.+.|.++.+.+
T Consensus 218 ~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~ 248 (445)
T 4b4t_P 218 LEYYNLLVKISLHKREYLEVAQYLQEIYQTD 248 (445)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcc
Confidence 234555666677788888887777775543
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=85.73 E-value=6.9 Score=31.32 Aligned_cols=47 Identities=9% Similarity=0.048 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhcCCC-CchhHHHHHHHHhccCChhHHHHHHHHHhh
Q 037414 390 VDLAEMAAKSLLERQPQ-NPGHYVLLSNVYANAGRWQDVAKIRDLMTR 436 (577)
Q Consensus 390 ~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 436 (577)
..+++.+++.+.+.+|. .......|+-++.+.|++++|.+..+.+.+
T Consensus 59 ~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 59 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 34566666666666653 234555666677777777777777666653
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=85.08 E-value=5.4 Score=30.10 Aligned_cols=63 Identities=13% Similarity=0.234 Sum_probs=50.3
Q ss_pred ChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHH
Q 037414 286 QGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVD 350 (577)
Q Consensus 286 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 350 (577)
+.-++.+-++.+....+.|++....+.+.||.+.+++..|.++|+.+..+.| +...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHHH
Confidence 4557777788888888999999999999999999999999999998865533 34556777664
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=83.90 E-value=28 Score=39.51 Aligned_cols=153 Identities=10% Similarity=-0.029 Sum_probs=84.9
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCC---------ChhHHHHHHhcC
Q 037414 164 VIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR---------DLVTWTVMIGAN 234 (577)
Q Consensus 164 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------~~~~~~~~i~~~ 234 (577)
++..+...+..+.+..+... .+.+....-.+..+|..+|++++|...|.+.... ....+..+....
T Consensus 818 l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 33444444555544443322 2345555556778899999999999999886421 111222222111
Q ss_pred C-CCcchhhHHHHHHHHHhcCCHHHHHHHHHhcc----CCCh----hhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCC
Q 037414 235 K-FLLDVILGTAVIDMYAKCGSIDSAREIFDRMR----QKNV----ISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPN 305 (577)
Q Consensus 235 g-~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 305 (577)
. ...-..-|.-++..+-+.|.++.+.++-.... ..+. ..|..+..++...|++++|...+-.+.....+
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r-- 970 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK-- 970 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--
Confidence 1 11112345666777777777776665544322 1111 24777777788888888887777766554332
Q ss_pred HHHHHHHHHHHhccCCHH
Q 037414 306 RITFVSLLYACSHTGLVE 323 (577)
Q Consensus 306 ~~t~~~ll~a~~~~g~~~ 323 (577)
...+..|+..++..|.++
T Consensus 971 ~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 971 KSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp HHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHhCCChh
Confidence 334555555555555443
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.84 E-value=4.7 Score=33.70 Aligned_cols=111 Identities=8% Similarity=0.059 Sum_probs=60.1
Q ss_pred HHHHHHhcCCHHHHHHHHHhcc-----CCCh-------hhHHHHHHHHHHcCChHHHHHHHHHhhhCC-CCCCHH-HHHH
Q 037414 246 VIDMYAKCGSIDSAREIFDRMR-----QKNV-------ISWSAMIAAYGYHGQGKKALDLFPMMLSSR-VLPNRI-TFVS 311 (577)
Q Consensus 246 Li~~~~~~g~~~~A~~~~~~~~-----~~~~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~-t~~~ 311 (577)
=+..+...|.++.|+-+.+.+. ++++ .++..+.+++...|++..|...|++.+... .-+... +...
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~ 105 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPS 105 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 4666777888888877776653 1332 144556677777888888888887764321 111111 1111
Q ss_pred HHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhCCC
Q 037414 312 LLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSV 370 (577)
Q Consensus 312 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 370 (577)
+- ...... ......++.+.---+...|.+.|++++|+.+++.++.
T Consensus 106 ~~----~~ss~p----------~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 106 TG----NSASTP----------QSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp -------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred cc----ccCCCc----------ccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 10 000000 0012233445545566778888888888888888853
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=82.80 E-value=37 Score=33.06 Aligned_cols=162 Identities=14% Similarity=0.059 Sum_probs=104.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhccC--------CChhhHHHHHHHHHHcC-ChHHHHHHHHHhhhCCCCCCHHHH--
Q 037414 241 ILGTAVIDMYAKCGSIDSAREIFDRMRQ--------KNVISWSAMIAAYGYHG-QGKKALDLFPMMLSSRVLPNRITF-- 309 (577)
Q Consensus 241 ~~~~~Li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~t~-- 309 (577)
.....|...|.+.|+.++..+++..... +..-.-..+|..+.... ..+.-.++..+..+.. .-+..+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 3456789999999999999999988764 23334667777776643 3334444444443210 0011223
Q ss_pred ----HHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHhC-----CCCCCHhH
Q 037414 310 ----VSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD----VKHYTCMVDLLGRAGRLDEALKLIESM-----SVEKDEGL 376 (577)
Q Consensus 310 ----~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-----~~~p~~~~ 376 (577)
..+...|...|++.+|.+++..+.+...-..+ .++|..-+.+|...+++.++...+.+. .+.+++.+
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 25778889999999999999888765332122 456777788899999999998888765 22234332
Q ss_pred HHHH--HH--HHH-hcCCHHHHHHHHHHHHhc
Q 037414 377 WGAL--LG--ACR-IHKNVDLAEMAAKSLLER 403 (577)
Q Consensus 377 ~~~l--l~--~~~-~~g~~~~a~~~~~~~~~~ 403 (577)
-..+ .. .+. ..+++..|...|-+..+.
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~ 210 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAFEG 210 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence 2221 12 245 689999998888777643
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=82.23 E-value=56 Score=35.77 Aligned_cols=20 Identities=25% Similarity=0.356 Sum_probs=9.5
Q ss_pred HHHHcCChHHHHHHHHHhhh
Q 037414 280 AYGYHGQGKKALDLFPMMLS 299 (577)
Q Consensus 280 ~~~~~g~~~~A~~l~~~m~~ 299 (577)
+|+..|+.....+++..+..
T Consensus 569 AyaGTGn~~aIq~LL~~~~~ 588 (963)
T 4ady_A 569 AYAGTGNNSAVKRLLHVAVS 588 (963)
T ss_dssp HTTTSCCHHHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHHHhcc
Confidence 34445554444445555543
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=81.67 E-value=42 Score=36.71 Aligned_cols=152 Identities=16% Similarity=0.016 Sum_probs=85.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccC--C-ChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHH--HHHHHHHHhcc
Q 037414 245 AVIDMYAKCGSIDSAREIFDRMRQ--K-NVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRIT--FVSLLYACSHT 319 (577)
Q Consensus 245 ~Li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~~~ll~a~~~~ 319 (577)
+|...|.-.|+-+....++..+.+ . ++.-..++.-++...|+.+.+..+.+.+... ..|.... ..++..+|+..
T Consensus 495 ALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGT 573 (963)
T 4ady_A 495 GMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLAS-DESLLRYGGAFTIALAYAGT 573 (963)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTS
T ss_pred HHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCC
Confidence 455556677887777777766543 1 2223334445566789999999998888764 2222221 12345578889
Q ss_pred CCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHH--HHcCCHHHHHHHHHhCC--CCCCHhHHHHHHHHHHhcCCH-HHHH
Q 037414 320 GLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLL--GRAGRLDEALKLIESMS--VEKDEGLWGALLGACRIHKNV-DLAE 394 (577)
Q Consensus 320 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~--~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~g~~-~~a~ 394 (577)
|+.....+++..+.++ ++..+-...+-++ .-.|+.+.+.++++.+. ..|....-..+.-+....|+. ..+.
T Consensus 574 Gn~~aIq~LL~~~~~d----~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~ai 649 (963)
T 4ady_A 574 GNNSAVKRLLHVAVSD----SNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAI 649 (963)
T ss_dssp CCHHHHHHHHHHHHHC----SCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHH
T ss_pred CCHHHHHHHHHHhccC----CcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHH
Confidence 9988888899888653 2333333334434 34677666777776552 223333222233333333332 4555
Q ss_pred HHHHHHH
Q 037414 395 MAAKSLL 401 (577)
Q Consensus 395 ~~~~~~~ 401 (577)
..+..+.
T Consensus 650 d~L~~L~ 656 (963)
T 4ady_A 650 DVLDPLT 656 (963)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 5666554
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=80.57 E-value=17 Score=30.31 Aligned_cols=109 Identities=11% Similarity=0.019 Sum_probs=57.8
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHcC-CCCc-------HHHHHHHHHHHHhCCCHHHHHHHHhhCC------CCChh
Q 037414 160 TLPFVIRACRDRKDIVMGRLIHDIVLKSG-LDID-------QFVCAALVDMYAKCKVIDDARQLFDQMP------TRDLV 225 (577)
Q Consensus 160 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~------~~~~~ 225 (577)
++..-++.+...+.++.|+-+.+.++... ..++ ..++..+.+++...|++..|...|++.. .+...
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 33444455555666666665555443321 1122 1244555666677777777766666531 11110
Q ss_pred HHHHH-Hhc-----CCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC
Q 037414 226 TWTVM-IGA-----NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ 268 (577)
Q Consensus 226 ~~~~~-i~~-----~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~ 268 (577)
+.+++ +.. .....+..+---+..+|.+.|+.++|..+++.++.
T Consensus 102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 00000 000 11233556666788899999999999999998864
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=80.26 E-value=22 Score=40.36 Aligned_cols=112 Identities=11% Similarity=0.023 Sum_probs=58.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccC---C-C----------------------hhhHHHHHHHHHHcCChHHHHHHHHHh
Q 037414 244 TAVIDMYAKCGSIDSAREIFDRMRQ---K-N----------------------VISWSAMIAAYGYHGQGKKALDLFPMM 297 (577)
Q Consensus 244 ~~Li~~~~~~g~~~~A~~~~~~~~~---~-~----------------------~~~~~~li~~~~~~g~~~~A~~l~~~m 297 (577)
-.+..+|..+|++++|...|++... . + ..-|.-++..|-+.|.++.++++-+..
T Consensus 846 yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lA 925 (1139)
T 4fhn_B 846 YLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLA 925 (1139)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3456777788888888888876532 0 0 011444555666666666666655544
Q ss_pred hhCCCCCCH--H--HHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCH
Q 037414 298 LSSRVLPNR--I--TFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRL 358 (577)
Q Consensus 298 ~~~g~~p~~--~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 358 (577)
.+...+-+. . .|..+..++...|++++|...+-.+.. ..--......||..++..|+.
T Consensus 926 i~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd---~~~r~~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 926 DASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST---TPLKKSCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp HHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH---SSSCHHHHHHHHHHHHHHCCH
T ss_pred HHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC---HHHHHHHHHHHHHHHHhCCCh
Confidence 432111111 1 345566666666666666666655521 112234444555545544443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 577 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 5e-05 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 0.002 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.5 bits (101), Expect = 5e-05
Identities = 27/184 (14%), Positives = 60/184 (32%), Gaps = 10/184 (5%)
Query: 249 MYAKCGSIDSAREIFDR---MRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPN 305
++ G I A F++ + + ++ + +A+ + LS +
Sbjct: 178 VFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NH 236
Query: 306 RITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD-VKHYTCMVDLLGRAGRLDEALKL 364
+ +L GL++ + + ++P Y + + L G + EA
Sbjct: 237 AVVHGNLACVYYEQGLIDLAIDTYRRA---IELQPHFPDAYCNLANALKEKGSVAEAEDC 293
Query: 365 IE--SMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAG 422
L R N++ A + LE P+ + L++V G
Sbjct: 294 YNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQG 353
Query: 423 RWQD 426
+ Q+
Sbjct: 354 KLQE 357
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.5 bits (88), Expect = 0.002
Identities = 25/182 (13%), Positives = 54/182 (29%), Gaps = 12/182 (6%)
Query: 248 DMYAKCGSIDSAREIFDRMRQKNVI---SWSAMIAAYGYHGQGKKALDLFPMMLSSRVLP 304
++ + D A + R + + Y G A+D + + + P
Sbjct: 211 NVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ--P 268
Query: 305 NRI-TFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALK 363
+ + +L A G V E +++ + ++ G ++EA++
Sbjct: 269 HFPDAYCNLANALKEKGSVAEAEDCYNTALRLC--PTHADSLNNLANIKREQGNIEEAVR 326
Query: 364 LIESMSVEKDEGLWGALLG---ACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYAN 420
L ++E A + + A M K + P Y + N
Sbjct: 327 LYRK-ALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE 385
Query: 421 AG 422
Sbjct: 386 MQ 387
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 577 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.85 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.85 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.53 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.48 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.09 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.0 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.99 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.91 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.88 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.85 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.85 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.84 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.81 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.69 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.44 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.4 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.4 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.37 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.34 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.26 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.21 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.18 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.17 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.14 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.13 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.07 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.02 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.01 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.92 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.91 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.82 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.8 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.76 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.73 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.7 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.67 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.66 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.65 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.63 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.62 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.62 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.6 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.25 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.17 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.17 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.12 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.07 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.06 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.0 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 96.97 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.8 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.73 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.54 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.41 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 95.88 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 92.43 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 92.23 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 91.08 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 91.08 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 89.35 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 89.05 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 85.9 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 85.6 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 83.09 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=1.6e-19 Score=179.29 Aligned_cols=333 Identities=12% Similarity=0.051 Sum_probs=167.7
Q ss_pred cChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHhcCCC--C-CcchHHHHHHHHHhCCChhHHHHHHH
Q 037414 71 RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKE--R-DSVSWSVMVGGFSKVADFINCFETFR 147 (577)
Q Consensus 71 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~ 147 (577)
++++.|.+.+..+++.. +.++.++..+...|.+.|++++|...|++..+ | +..+|..+...|.+.|++++|++.+.
T Consensus 13 G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~~~~ 91 (388)
T d1w3ba_ 13 GDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYR 91 (388)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccccccccccc
Confidence 44667777777776654 44566677777777777777777777776543 2 45567777777777777777777777
Q ss_pred HHHHCCCCCCcchHHHHHHHH----------------------------------hcCCChHHHHHHHHHHHHcCCCCcH
Q 037414 148 EFIRCGMQLDSYTLPFVIRAC----------------------------------RDRKDIVMGRLIHDIVLKSGLDIDQ 193 (577)
Q Consensus 148 ~m~~~g~~p~~~t~~~ll~~~----------------------------------~~~~~~~~a~~~~~~~~~~g~~~~~ 193 (577)
...+.... +........... ...+....+...+....... +.+.
T Consensus 92 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 169 (388)
T d1w3ba_ 92 HALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFA 169 (388)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCH
T ss_pred cccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccC-cchh
Confidence 76664221 222222222222 22333333333333333322 2233
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC---CC
Q 037414 194 FVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ---KN 270 (577)
Q Consensus 194 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~---~~ 270 (577)
..+..+...+...|++++|...+++..+.+ +.+..++..+...|...|++++|...|++... .+
T Consensus 170 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-------------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 236 (388)
T d1w3ba_ 170 VAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-------------PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH 236 (388)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-------------TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTC
T ss_pred HHHHhhcccccccCcHHHHHHHHHHHHHhC-------------cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhH
Confidence 444444455555555555555554432211 11233444455555555555555555554432 23
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHH
Q 037414 271 VISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVD 350 (577)
Q Consensus 271 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 350 (577)
...|..+...+.+.|++++|+..|++..+.. +-+..++..+...+...|+.++|.+.++...+. .+.+...+..+..
T Consensus 237 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~ 313 (388)
T d1w3ba_ 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLAN 313 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc--CCccchhhhHHHH
Confidence 3344444555555555555555555544431 112334444555555555555555555554332 2233444445555
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccC
Q 037414 351 LLGRAGRLDEALKLIESM-SVEKD-EGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAG 422 (577)
Q Consensus 351 ~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 422 (577)
.|.+.|++++|.+.|++. ...|+ ..+|..+...+...|++++|+..++++++.+|+++.+|..|+.+|.+.|
T Consensus 314 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~ 387 (388)
T d1w3ba_ 314 IKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 555555555555555543 33332 3344445555555555555555555555555555555555555554444
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=2.1e-18 Score=170.95 Aligned_cols=333 Identities=11% Similarity=-0.001 Sum_probs=261.0
Q ss_pred HHHHHHcCCChHHHHHHHhcCCC--C-CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CcchHHHHHHHHhcCCC
Q 037414 98 LLYIYALHKALTDAHALFNGMKE--R-DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQL-DSYTLPFVIRACRDRKD 173 (577)
Q Consensus 98 li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~ 173 (577)
+...+.+.|++++|.+.|+++.+ | +...|..+...|.+.|++++|+..|++..+. .| +..++..+...+.+.|+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ--NPLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHhhhhcc
Confidence 34567788999999999998753 3 6778999999999999999999999999885 34 56688889999999999
Q ss_pred hHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCC---CCChhHHHHHHh-----------------c
Q 037414 174 IVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMP---TRDLVTWTVMIG-----------------A 233 (577)
Q Consensus 174 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~~i~-----------------~ 233 (577)
+++|...+....+.. +.+..........+...+....+........ ......+..... .
T Consensus 83 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred ccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHh
Confidence 999999999998875 3344444444444444443333332222111 111100000000 0
Q ss_pred -CCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHH
Q 037414 234 -NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITF 309 (577)
Q Consensus 234 -~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 309 (577)
...+.+...+..+...+...|++++|...+++..+ .+...|..+...+...|++++|+..+++....+ +.+...+
T Consensus 162 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 240 (388)
T d1w3ba_ 162 IETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVH 240 (388)
T ss_dssp HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHH
T ss_pred hccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHH
Confidence 12233466788889999999999999999998754 456688899999999999999999999988764 4456677
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHhHHHHHHHHHHh
Q 037414 310 VSLLYACSHTGLVEEGLRLFSSMWDDFAVRP-DVKHYTCMVDLLGRAGRLDEALKLIESM--SVEKDEGLWGALLGACRI 386 (577)
Q Consensus 310 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~ 386 (577)
..+...+...|++++|...|+..++ +.| +...+..+...|...|++++|.+.++.. ....+...+..+...+..
T Consensus 241 ~~l~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 317 (388)
T d1w3ba_ 241 GNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHH
Confidence 7888999999999999999999875 344 4678889999999999999999999887 223466788889999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhC
Q 037414 387 HKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRR 437 (577)
Q Consensus 387 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 437 (577)
.|++++|+..++++++..|+++.++..++.+|...|++++|.+.+++..+.
T Consensus 318 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 368 (388)
T d1w3ba_ 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999988753
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=3.8e-13 Score=129.68 Aligned_cols=224 Identities=17% Similarity=0.042 Sum_probs=182.5
Q ss_pred HHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHH
Q 037414 199 LVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ---KNVISWS 275 (577)
Q Consensus 199 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~ 275 (577)
....|.+.|++++|...|+++.+.++ .+...+..+..+|...|++++|...|++..+ .+...|.
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~P-------------~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 91 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQDP-------------KHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALM 91 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSCT-------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-------------CCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccc
Confidence 45668889999999999998865442 2567888899999999999999999998764 4567888
Q ss_pred HHHHHHHHcCChHHHHHHHHHhhhCCCCCCHH----------------HHHHHHHHHhccCCHHHHHHHHHHhhHhcCCC
Q 037414 276 AMIAAYGYHGQGKKALDLFPMMLSSRVLPNRI----------------TFVSLLYACSHTGLVEEGLRLFSSMWDDFAVR 339 (577)
Q Consensus 276 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----------------t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 339 (577)
.+...|...|++++|.+.+++..... |+.. .....+..+...+..+++...+...++...-.
T Consensus 92 ~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~ 169 (323)
T d1fcha_ 92 ALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTS 169 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTS
T ss_pred cccccccccccccccccchhhHHHhc--cchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcc
Confidence 89999999999999999999987642 2210 11112223344566788888888887654444
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 037414 340 PDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNV 417 (577)
Q Consensus 340 p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 417 (577)
++...+..+...+...|++++|...|++. ...| +...|..+...+...|++++|.+.++++++.+|.++.+|..++.+
T Consensus 170 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~ 249 (323)
T d1fcha_ 170 IDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGIS 249 (323)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 56778888999999999999999999987 3345 566899999999999999999999999999999999999999999
Q ss_pred HhccCChhHHHHHHHHHhhC
Q 037414 418 YANAGRWQDVAKIRDLMTRR 437 (577)
Q Consensus 418 ~~~~g~~~~A~~~~~~m~~~ 437 (577)
|.+.|++++|.+.+++..+.
T Consensus 250 ~~~~g~~~~A~~~~~~al~l 269 (323)
T d1fcha_ 250 CINLGAHREAVEHFLEALNM 269 (323)
T ss_dssp HHHHTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHh
Confidence 99999999999999987763
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=2.1e-12 Score=124.34 Aligned_cols=268 Identities=10% Similarity=-0.026 Sum_probs=181.8
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCC-CcchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhC
Q 037414 128 VMVGGFSKVADFINCFETFREFIRCGMQL-DSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKC 206 (577)
Q Consensus 128 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 206 (577)
.....+.+.|++++|+..|++..+. .| +..+|..+..++...|++++|...+.+.++.. +.+...+..+...|...
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~ 100 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQ--DPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNE 100 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccc
Confidence 3455677888888888888888875 34 45677777777888888888888888887764 44567777788888888
Q ss_pred CCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCC
Q 037414 207 KVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQ 286 (577)
Q Consensus 207 g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 286 (577)
|++++|.+.+++....++.... .......... ..+.......+..+...+.
T Consensus 101 ~~~~~A~~~~~~~~~~~~~~~~-------------~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~ 151 (323)
T d1fcha_ 101 SLQRQACEILRDWLRYTPAYAH-------------LVTPAEEGAG----------------GAGLGPSKRILGSLLSDSL 151 (323)
T ss_dssp TCHHHHHHHHHHHHHTSTTTGG-------------GCC-------------------------------CTTHHHHHHHH
T ss_pred ccccccccchhhHHHhccchHH-------------HHHhhhhhhh----------------hcccccchhhHHHHHHhhH
Confidence 8888888887765432211100 0000000000 0001111112223344566
Q ss_pred hHHHHHHHHHhhhCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 037414 287 GKKALDLFPMMLSSR-VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLI 365 (577)
Q Consensus 287 ~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 365 (577)
..+|.+.|.+..... -.++...+..+...+...|++++|...++..++. .+-+...|..+...|.+.|++++|.+.|
T Consensus 152 ~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 229 (323)
T d1fcha_ 152 FLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAY 229 (323)
T ss_dssp HHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhccccccccc--ccccccchhhhhhcccccccchhHHHHH
Confidence 778888888776542 2345667778888889999999999999998754 2234778888999999999999999999
Q ss_pred HhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchh-----------HHHHHHHHhccCChhHHHH
Q 037414 366 ESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGH-----------YVLLSNVYANAGRWQDVAK 429 (577)
Q Consensus 366 ~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----------~~~l~~~~~~~g~~~~A~~ 429 (577)
++. ...| +..+|..+..+|...|++++|+..|+++++..|++... |..+..++...|+.+.+..
T Consensus 230 ~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~ 306 (323)
T d1fcha_ 230 RRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 306 (323)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 887 4455 46689999999999999999999999999988776543 3445556666666655443
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.09 E-value=5.3e-09 Score=100.67 Aligned_cols=263 Identities=11% Similarity=0.022 Sum_probs=176.8
Q ss_pred HHhcCCChHHHHHHHHHHHHcCCCCc----HHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhh
Q 037414 167 ACRDRKDIVMGRLIHDIVLKSGLDID----QFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVIL 242 (577)
Q Consensus 167 ~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~ 242 (577)
.+...|++++|.+++++.++.....+ ..+++.+..+|...|++++|...|++..+..... .........
T Consensus 21 ~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~ 93 (366)
T d1hz4a_ 21 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH-------DVWHYALWS 93 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT-------TCHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh-------cchHHHHHH
Confidence 34566777777777776665431111 2355666677777888888887777654311000 000012335
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccC-------CC----hhhHHHHHHHHHHcCChHHHHHHHHHhhhC----CCCCCHH
Q 037414 243 GTAVIDMYAKCGSIDSAREIFDRMRQ-------KN----VISWSAMIAAYGYHGQGKKALDLFPMMLSS----RVLPNRI 307 (577)
Q Consensus 243 ~~~Li~~~~~~g~~~~A~~~~~~~~~-------~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~~ 307 (577)
+..+...|...|++..|...+..... +. ...+..+...+...|+++.+...+...... +......
T Consensus 94 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 173 (366)
T d1hz4a_ 94 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 173 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHH
Confidence 56677788888888888888776542 11 124556677888899999999998887653 2223345
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-----CHhH
Q 037414 308 TFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD-----VKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-----DEGL 376 (577)
Q Consensus 308 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-----~~~~ 376 (577)
++......+...+...++...+........-... ...+..+...+...|++++|...+++. ...| ....
T Consensus 174 ~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 253 (366)
T d1hz4a_ 174 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 253 (366)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHH
Confidence 5566667777888888888887766543222111 234556667788999999999999887 2222 2335
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc------CCCCchhHHHHHHHHhccCChhHHHHHHHHHhh
Q 037414 377 WGALLGACRIHKNVDLAEMAAKSLLER------QPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTR 436 (577)
Q Consensus 377 ~~~ll~~~~~~g~~~~a~~~~~~~~~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 436 (577)
+..+...+...|++++|...+++++.. .|....++..+..+|...|++++|.+.+++..+
T Consensus 254 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 254 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 666778899999999999999988753 244556788999999999999999999987654
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.00 E-value=1.3e-07 Score=90.64 Aligned_cols=295 Identities=6% Similarity=-0.086 Sum_probs=197.7
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCCc------chHHHHHHHHhcCCChHHHHHHHHHHHHcCC--C---CcHHHHH
Q 037414 129 MVGGFSKVADFINCFETFREFIRCGMQLDS------YTLPFVIRACRDRKDIVMGRLIHDIVLKSGL--D---IDQFVCA 197 (577)
Q Consensus 129 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~---~~~~~~~ 197 (577)
....+...|++++|++++++..+. .|+. ..+..+...+...|++++|...+.+..+... . .....+.
T Consensus 18 rA~~~~~~g~~~~A~~~~~~aL~~--~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 95 (366)
T d1hz4a_ 18 RAQVAINDGNPDEAERLAKLALEE--LPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 95 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHT--CCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhh--CcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 345567788888888888888764 2332 2455566677888888888888887765321 1 1134566
Q ss_pred HHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC--------C
Q 037414 198 ALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ--------K 269 (577)
Q Consensus 198 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~--------~ 269 (577)
.+...|...|++..|...+.+........ ...........+..+...|...|+++.+...+..... .
T Consensus 96 ~~~~~~~~~~~~~~a~~~~~~al~~~~~~-----~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 170 (366)
T d1hz4a_ 96 QQSEILFAQGFLQTAWETQEKAFQLINEQ-----HLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ 170 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHT-----TCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhc-----ccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhh
Confidence 67788889999999988877643200000 0000111234566788899999999999999987653 1
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHhhhC----CCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC--C
Q 037414 270 NVISWSAMIAAYGYHGQGKKALDLFPMMLSS----RVLPN--RITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP--D 341 (577)
Q Consensus 270 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p--~ 341 (577)
....+..+...+...++..++...+.+.... +..+. ...+..+...+...|+.++|...+....+...-.+ .
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 250 (366)
T d1hz4a_ 171 QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFL 250 (366)
T ss_dssp GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGG
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHH
Confidence 2345566677788899999998888766542 21121 22445566678889999999999998864321111 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------
Q 037414 342 VKHYTCMVDLLGRAGRLDEALKLIESM-------SVEKD-EGLWGALLGACRIHKNVDLAEMAAKSLLERQPQ------- 406 (577)
Q Consensus 342 ~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------- 406 (577)
...+..+...|...|++++|.+.+++. +..|+ ...+..+...+...|++++|.+.+++++++.+.
T Consensus 251 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~ 330 (366)
T d1hz4a_ 251 QGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHF 330 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHH
Confidence 345666788999999999999998875 33343 337777888899999999999999999876432
Q ss_pred --CchhHHHHHHHHhccCChhHHHHH
Q 037414 407 --NPGHYVLLSNVYANAGRWQDVAKI 430 (577)
Q Consensus 407 --~~~~~~~l~~~~~~~g~~~~A~~~ 430 (577)
....+..++..+...++.+++.+-
T Consensus 331 ~~~~~~~~~~~~~l~~~~~l~e~e~~ 356 (366)
T d1hz4a_ 331 VIEGEAMAQQLRQLIQLNTLPELEQH 356 (366)
T ss_dssp HTTHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 122344455556666776666543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.99 E-value=3.7e-08 Score=93.28 Aligned_cols=186 Identities=10% Similarity=0.095 Sum_probs=137.6
Q ss_pred CHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC--C-C-hhhHHHHHHHHHH
Q 037414 208 VIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ--K-N-VISWSAMIAAYGY 283 (577)
Q Consensus 208 ~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~--~-~-~~~~~~li~~~~~ 283 (577)
..++|..+|++..+. ..+.+..++...+..+.+.|+++.|..+|+++.+ | + ...|...+....+
T Consensus 79 ~~~~a~~i~~ral~~------------~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~ 146 (308)
T d2onda1 79 FSDEAANIYERAIST------------LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARR 146 (308)
T ss_dssp HHHHHHHHHHHHHTT------------TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHH------------cCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 457777888775431 1123456777888888999999999999998764 2 2 2368888888889
Q ss_pred cCChHHHHHHHHHhhhCCCCCCHHHHHHHHH-HHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 037414 284 HGQGKKALDLFPMMLSSRVLPNRITFVSLLY-ACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEAL 362 (577)
Q Consensus 284 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~-a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 362 (577)
.|+.++|.++|+++.+.+.. +...|..... -+...|+.+.|..+|+.+++. .+.+...|...++.+.+.|+++.|.
T Consensus 147 ~~~~~~ar~i~~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR 223 (308)
T d2onda1 147 AEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTR 223 (308)
T ss_dssp HHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHH
T ss_pred cCChHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHH
Confidence 99999999999998876433 2333333222 234468899999999998865 3345778888899999999999999
Q ss_pred HHHHhC----CCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 037414 363 KLIESM----SVEKD--EGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNP 408 (577)
Q Consensus 363 ~~~~~m----~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 408 (577)
.+|++. +..|+ ...|...+..-..+|+.+.+..+.+++.+..|...
T Consensus 224 ~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~ 275 (308)
T d2onda1 224 VLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp HHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcccc
Confidence 999886 33332 34788888888888999999999999988877653
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.91 E-value=6.2e-09 Score=95.85 Aligned_cols=201 Identities=13% Similarity=-0.042 Sum_probs=122.4
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC---CC
Q 037414 194 FVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ---KN 270 (577)
Q Consensus 194 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~---~~ 270 (577)
.++..+..+|.+.|++++|...|++..+.+ +.+..+++.+..+|.+.|++++|...|++..+ .+
T Consensus 38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-------------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 104 (259)
T d1xnfa_ 38 QLLYERGVLYDSLGLRALARNDFSQALAIR-------------PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY 104 (259)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhhccC-------------CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhh
Confidence 456666777778888888888877765322 12456777778888888888888888887764 34
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHH
Q 037414 271 VISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVD 350 (577)
Q Consensus 271 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 350 (577)
..+|..+...|...|++++|.+.|++..+.. +.+......+..++.+.+..+....+...... ..+....++ ++.
T Consensus 105 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~ 179 (259)
T d1xnfa_ 105 NYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK---SDKEQWGWN-IVE 179 (259)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH---SCCCSTHHH-HHH
T ss_pred hhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc---cchhhhhhh-HHH
Confidence 5577778888888888888888888877653 22344333344444555555555444444432 222222222 222
Q ss_pred HHHHcCC----HHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHH
Q 037414 351 LLGRAGR----LDEALKLIESM-SVEKD-EGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYV 412 (577)
Q Consensus 351 ~~~~~g~----~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 412 (577)
.+..... .+.+...+... ...|+ ..+|..+...+...|++++|...++++++.+|++...|.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 247 (259)
T d1xnfa_ 180 FYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHR 247 (259)
T ss_dssp HHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 2222111 22222221111 11222 236677788889999999999999999999998765543
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.88 E-value=6.4e-09 Score=99.98 Aligned_cols=227 Identities=8% Similarity=-0.110 Sum_probs=145.8
Q ss_pred ChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCC--HHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhH-HHHHHH
Q 037414 173 DIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKV--IDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILG-TAVIDM 249 (577)
Q Consensus 173 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~-~~Li~~ 249 (577)
.++++...++.+++.. +.+...+..+..++...++ +++|...++++.+.++ ++...+ ..+...
T Consensus 88 ~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~-------------~~~~~~~~~~~~~ 153 (334)
T d1dcea1 88 LVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-------------RNFHCWDYRRFVA 153 (334)
T ss_dssp HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT-------------TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCc-------------hhhhhhhhHHHHH
Confidence 3556666666666654 4455566666555555543 6677776666543221 122222 233455
Q ss_pred HHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 037414 250 YAKCGSIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGL 326 (577)
Q Consensus 250 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 326 (577)
+...|..++|...++...+ .+...|+.+...+.+.|++++|...+++.... .|+.. .+...+...+..+++.
T Consensus 154 ~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~---~~~~~~~~l~~~~~a~ 228 (334)
T d1dcea1 154 AQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLKEL---ELVQNAFFTDPNDQSA 228 (334)
T ss_dssp HHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHHHH---HHHHHHHHHCSSCSHH
T ss_pred HHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHHHH---HHHHHHHHhcchhHHH
Confidence 6667777777777777664 34566777777777888777776655544432 22221 2223344456666677
Q ss_pred HHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 037414 327 RLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEKD-EGLWGALLGACRIHKNVDLAEMAAKSLLERQ 404 (577)
Q Consensus 327 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 404 (577)
..+...+.. -+++...+..+...+...|+.++|.+.+.+. ...|+ ..+|..+...+...|+.++|...++++++.+
T Consensus 229 ~~~~~~l~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ld 306 (334)
T d1dcea1 229 WFYHRWLLG--RAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 306 (334)
T ss_dssp HHHHHHHHS--CCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHh--CcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 777766542 2334445556667777888999999988876 44553 4478888888999999999999999999999
Q ss_pred CCCchhHHHHHHHHhc
Q 037414 405 PQNPGHYVLLSNVYAN 420 (577)
Q Consensus 405 p~~~~~~~~l~~~~~~ 420 (577)
|.+...|..|...+.-
T Consensus 307 P~~~~y~~~L~~~~~~ 322 (334)
T d1dcea1 307 PMRAAYLDDLRSKFLL 322 (334)
T ss_dssp GGGHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHhH
Confidence 9888888877666653
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.85 E-value=1.1e-07 Score=89.81 Aligned_cols=183 Identities=13% Similarity=0.124 Sum_probs=141.0
Q ss_pred ChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHh
Q 037414 173 DIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAK 252 (577)
Q Consensus 173 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~ 252 (577)
..+++..++++.++...+.+...+...+..+.+.|+++.|..+|+++.+.++. ....+|..++..+.+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~------------~~~~~w~~~~~~~~~ 146 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI------------DPTLVYIQYMKFARR 146 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS------------CTHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcC------------ChHHHHHHHHHHHHH
Confidence 45678888988887655666778888899999999999999999987643211 123467888899999
Q ss_pred cCCHHHHHHHHHhccCC---ChhhHHHHHHH-HHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 037414 253 CGSIDSAREIFDRMRQK---NVISWSAMIAA-YGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRL 328 (577)
Q Consensus 253 ~g~~~~A~~~~~~~~~~---~~~~~~~li~~-~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 328 (577)
.|+++.|.++|++..+. +...|...... +...|+.+.|..+|+.+... .+.+...+...+..+.+.|++++|+.+
T Consensus 147 ~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~ 225 (308)
T d2onda1 147 AEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVL 225 (308)
T ss_dssp HHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred cCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHH
Confidence 99999999999998652 23333333332 23468899999999999875 344567888889999999999999999
Q ss_pred HHHhhHhcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 037414 329 FSSMWDDFAVRPD--VKHYTCMVDLLGRAGRLDEALKLIESM 368 (577)
Q Consensus 329 ~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m 368 (577)
|++.++..+..|+ ...|...+.--.+.|+.+.+.++++++
T Consensus 226 fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~ 267 (308)
T d2onda1 226 FERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999876555554 457888888778889999999999887
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.85 E-value=4.6e-08 Score=92.81 Aligned_cols=194 Identities=6% Similarity=0.075 Sum_probs=160.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhccC--C-ChhhHHHHHHHHHHcC-ChHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 037414 240 VILGTAVIDMYAKCGSIDSAREIFDRMRQ--K-NVISWSAMIAAYGYHG-QGKKALDLFPMMLSSRVLPNRITFVSLLYA 315 (577)
Q Consensus 240 ~~~~~~Li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 315 (577)
..+++.+...+.+.+..++|+++++++.+ | +...|+.....+...| ++++|+..+++..+.. +-+..+|..+...
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHH
Confidence 56778888889999999999999999875 3 4567888888888877 5899999999998753 3356788888899
Q ss_pred HhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCC----
Q 037414 316 CSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKN---- 389 (577)
Q Consensus 316 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~---- 389 (577)
+...|++++|...+..+++. -+.+...|..+...+.+.|++++|.+.++++ .+.| +...|+.+...+...+.
T Consensus 122 ~~~l~~~~eAl~~~~kal~~--dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~ 199 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDR 199 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHhhccHHHHHHHHhhhhhh--hhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchh
Confidence 99999999999999999853 2335889999999999999999999999988 4455 56688877776666554
Q ss_pred --HHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhC
Q 037414 390 --VDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRR 437 (577)
Q Consensus 390 --~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 437 (577)
.++|+..+.++++.+|.+...|..+..++...| .+++.+.++...+.
T Consensus 200 ~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l 248 (315)
T d2h6fa1 200 AVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDL 248 (315)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHH
T ss_pred hhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHh
Confidence 678999999999999999999999888876655 57788888777653
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.84 E-value=4.8e-08 Score=92.68 Aligned_cols=191 Identities=8% Similarity=0.010 Sum_probs=106.4
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCc-chHHHHHHHHhcCC-ChHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 037414 125 SWSVMVGGFSKVADFINCFETFREFIRCGMQLDS-YTLPFVIRACRDRK-DIVMGRLIHDIVLKSGLDIDQFVCAALVDM 202 (577)
Q Consensus 125 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 202 (577)
.|+.+...+.+.+.+++|++++++.++. .|+. ..|+....++...+ ++++|...++.+++.. +-+..+|+.+...
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~l--nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHH
Confidence 3455555566666777777777777663 4433 34455555555544 4667777777666654 4456666666666
Q ss_pred HHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHH
Q 037414 203 YAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ---KNVISWSAMIA 279 (577)
Q Consensus 203 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~ 279 (577)
+.+.|++++|...|+++.+.++ .+..+|+.+...+.+.|++++|...|+++.+ .+...|+.+..
T Consensus 122 ~~~l~~~~eAl~~~~kal~~dp-------------~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~ 188 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQDA-------------KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYF 188 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCT-------------TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHhhhhhhhh-------------cchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHH
Confidence 6666666666666666554322 1344555666666666666666666666553 23445555555
Q ss_pred HHHHcCC------hHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhh
Q 037414 280 AYGYHGQ------GKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMW 333 (577)
Q Consensus 280 ~~~~~g~------~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 333 (577)
.+.+.+. +++|++.+.+..+.. +-+...+..+...+...| .+++.+.+....
T Consensus 189 ~l~~~~~~~~~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~ 246 (315)
T d2h6fa1 189 VISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRG-LSKYPNLLNQLL 246 (315)
T ss_dssp HHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTC-GGGCHHHHHHHH
T ss_pred HHHHccccchhhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHhcC-hHHHHHHHHHHH
Confidence 5544443 355666666655532 223444444444443332 344555555443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.81 E-value=1.5e-08 Score=93.09 Aligned_cols=196 Identities=11% Similarity=0.010 Sum_probs=137.7
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 037414 239 DVILGTAVIDMYAKCGSIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYA 315 (577)
Q Consensus 239 ~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 315 (577)
...++..+..+|.+.|++++|...|++..+ .++.+|+.+..+|.+.|++++|+..|++..+.. +-+..++..+..+
T Consensus 36 ~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~ 114 (259)
T d1xnfa_ 36 RAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIA 114 (259)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHH
Confidence 345777889999999999999999998864 567889999999999999999999999999853 2245678888889
Q ss_pred HhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHHhc----CCH
Q 037414 316 CSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEKDEGLWGALLGACRIH----KNV 390 (577)
Q Consensus 316 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~----g~~ 390 (577)
+...|+.++|...|+..++. .+.+......+...+.+.+..+.+..+.... ...++...+.. +..+... +..
T Consensus 115 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 191 (259)
T d1xnfa_ 115 LYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNI-VEFYLGNISEQTLM 191 (259)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHH-HHHHTTSSCHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHhh--ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhH-HHHHHHHHHHHHHH
Confidence 99999999999999999864 1223444444444555666555555444443 11222222322 2222211 223
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCC
Q 037414 391 DLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 391 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
+.+...+.......|....+|..+...|...|++++|.+.++...+..
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 192 ERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 333333333344456666788899999999999999999999887644
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.69 E-value=2e-08 Score=96.45 Aligned_cols=214 Identities=6% Similarity=-0.110 Sum_probs=155.6
Q ss_pred hCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcC--CHHHHHHHHHhccC---CChhhHHHH-H
Q 037414 205 KCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCG--SIDSAREIFDRMRQ---KNVISWSAM-I 278 (577)
Q Consensus 205 ~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~l-i 278 (577)
..|++++|...|+...+.++ .+...+..+..++...+ ++++|...++++.+ ++...|... .
T Consensus 85 ~~~~~~~al~~~~~~l~~~p-------------k~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~ 151 (334)
T d1dcea1 85 SAALVKAELGFLESCLRVNP-------------KSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRF 151 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHCT-------------TCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCC-------------CcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHH
Confidence 34557788888877654322 24555666666666655 58999999998864 345555544 4
Q ss_pred HHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCH
Q 037414 279 AAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRL 358 (577)
Q Consensus 279 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 358 (577)
..+...+.+++|+..++++.+.. +-+...+..+...+...|++++|...+....+. .|. ...+...+...+..
T Consensus 152 ~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~---~~~~~~~~~~l~~~ 224 (334)
T d1dcea1 152 VAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV---LLK---ELELVQNAFFTDPN 224 (334)
T ss_dssp HHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH---HHH---HHHHHHHHHHHCSS
T ss_pred HHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh---HHH---HHHHHHHHHHhcch
Confidence 66777899999999999998864 335677888888888888888776655544321 121 12233445566777
Q ss_pred HHHHHHHHhC--CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhh
Q 037414 359 DEALKLIESM--SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTR 436 (577)
Q Consensus 359 ~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 436 (577)
+++...+... ...++...+..+...+...++.++|...+.+..+.+|.+..++..++.+|...|++++|.+.++...+
T Consensus 225 ~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ 304 (334)
T d1dcea1 225 DQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 304 (334)
T ss_dssp CSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7777777665 22234556667777788889999999999999999999999999999999999999999999999876
Q ss_pred CC
Q 037414 437 RR 438 (577)
Q Consensus 437 ~g 438 (577)
..
T Consensus 305 ld 306 (334)
T d1dcea1 305 VD 306 (334)
T ss_dssp HC
T ss_pred HC
Confidence 43
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.44 E-value=1.4e-06 Score=81.26 Aligned_cols=192 Identities=10% Similarity=0.006 Sum_probs=133.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccC-----CC----hhhHHHHHHHHHHcCChHHHHHHHHHhhhC----CC-CCCHHH
Q 037414 243 GTAVIDMYAKCGSIDSAREIFDRMRQ-----KN----VISWSAMIAAYGYHGQGKKALDLFPMMLSS----RV-LPNRIT 308 (577)
Q Consensus 243 ~~~Li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~-~p~~~t 308 (577)
|....+.|...|++++|...|++..+ .+ ..+|+.+...|.+.|++++|++.+++..+. |. .....+
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 119 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence 44457889999999999999988753 22 357889999999999999999999987653 21 111345
Q ss_pred HHHHHHHHh-ccCCHHHHHHHHHHhhHhc---CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-------H-
Q 037414 309 FVSLLYACS-HTGLVEEGLRLFSSMWDDF---AVRP-DVKHYTCMVDLLGRAGRLDEALKLIESM-SVEKD-------E- 374 (577)
Q Consensus 309 ~~~ll~a~~-~~g~~~~a~~~~~~m~~~~---~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-------~- 374 (577)
+..+...|. ..|++++|.+.+....+-. +..+ ...++..+...|.+.|++++|.+.|++. ...|+ .
T Consensus 120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~ 199 (290)
T d1qqea_ 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (290)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHH
Confidence 566666664 4699999999998876422 1111 1356777889999999999999999886 11111 1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch-----hHHHHHHHHhc--cCChhHHHHHHHHH
Q 037414 375 GLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPG-----HYVLLSNVYAN--AGRWQDVAKIRDLM 434 (577)
Q Consensus 375 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----~~~~l~~~~~~--~g~~~~A~~~~~~m 434 (577)
..+...+..+...|+.+.|...+++..+.+|..+. ....++.+|.. .+++++|...|+.+
T Consensus 200 ~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~ 266 (290)
T d1qqea_ 200 DYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 12344555677889999999999999998875332 34556666655 35678888877543
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.40 E-value=8.1e-07 Score=77.69 Aligned_cols=96 Identities=9% Similarity=-0.032 Sum_probs=53.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 037414 340 PDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNV 417 (577)
Q Consensus 340 p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 417 (577)
|+...+.-....|.+.|++++|+..|++. ...| +...|..+..+|...|++++|+..++++++++|.++.+|..++.+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~ 81 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHH
Confidence 34444444445555555555555555544 2223 344555555556666666666666666666666665566666666
Q ss_pred HhccCChhHHHHHHHHHh
Q 037414 418 YANAGRWQDVAKIRDLMT 435 (577)
Q Consensus 418 ~~~~g~~~~A~~~~~~m~ 435 (577)
|...|++++|...+++..
T Consensus 82 ~~~l~~~~~A~~~~~~al 99 (201)
T d2c2la1 82 QLEMESYDEAIANLQRAY 99 (201)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 666666666666655544
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.40 E-value=5.8e-06 Score=71.58 Aligned_cols=141 Identities=8% Similarity=-0.062 Sum_probs=95.2
Q ss_pred HHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 037414 247 IDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGL 326 (577)
Q Consensus 247 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 326 (577)
...+...|+++.|.+.|+++.+++...|..+...|...|++++|++.|++.++.. +-+...|..+..++.+.|++++|.
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHH
Confidence 5567788899999999988888888888888888889999999999998888753 334667777888888888888888
Q ss_pred HHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 037414 327 RLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKD-EGLWGALLGACRIHKNVDLAEMAAKSLLERQP 405 (577)
Q Consensus 327 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 405 (577)
..|+..++. .+++... .|...| +..+++ ..++..+..++...|++++|.+.++++++..|
T Consensus 91 ~~~~kAl~~--~~~n~~~------~~~~~~-----------~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~ 151 (192)
T d1hh8a_ 91 KDLKEALIQ--LRGNQLI------DYKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 151 (192)
T ss_dssp HHHHHHHHT--TTTCSEE------ECGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHh--CccCchH------HHHHhh-----------hhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 888877542 1111000 000000 000111 12444555667777777777777777777766
Q ss_pred CC
Q 037414 406 QN 407 (577)
Q Consensus 406 ~~ 407 (577)
..
T Consensus 152 ~~ 153 (192)
T d1hh8a_ 152 EP 153 (192)
T ss_dssp SG
T ss_pred Cc
Confidence 54
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.37 E-value=1.9e-06 Score=67.94 Aligned_cols=89 Identities=11% Similarity=0.111 Sum_probs=66.3
Q ss_pred HHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhH
Q 037414 349 VDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQD 426 (577)
Q Consensus 349 i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 426 (577)
...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++++.+|+++..|..++.+|...|++++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~ 89 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEE 89 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHH
Confidence 34566777788887777776 3334 455777777777788888888888888888888888888888888888888888
Q ss_pred HHHHHHHHhhC
Q 037414 427 VAKIRDLMTRR 437 (577)
Q Consensus 427 A~~~~~~m~~~ 437 (577)
|...++...+.
T Consensus 90 A~~~~~~a~~~ 100 (117)
T d1elwa_ 90 AKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 88888777654
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.34 E-value=4.3e-06 Score=65.83 Aligned_cols=105 Identities=12% Similarity=0.042 Sum_probs=86.5
Q ss_pred HHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCC
Q 037414 312 LLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKN 389 (577)
Q Consensus 312 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~ 389 (577)
-...+...|++++|...|...++. -+.+...|..+..+|.+.|++++|++.+++. .+.| +...|..+..++...|+
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc--CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccC
Confidence 345677889999999999998754 2345778888899999999999999999887 3334 66789999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 037414 390 VDLAEMAAKSLLERQPQNPGHYVLLSNVY 418 (577)
Q Consensus 390 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 418 (577)
+++|+..++++++.+|.++..+..+.++-
T Consensus 87 ~~~A~~~~~~a~~~~p~~~~~~~~l~~l~ 115 (117)
T d1elwa_ 87 FEEAKRTYEEGLKHEANNPQLKEGLQNME 115 (117)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence 99999999999999999988877776654
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.26 E-value=1.6e-06 Score=67.89 Aligned_cols=88 Identities=16% Similarity=0.015 Sum_probs=78.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCCh
Q 037414 347 CMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRW 424 (577)
Q Consensus 347 ~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 424 (577)
.+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++.+|.++.++..++.+|...|++
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCH
Confidence 3456688899999999999987 4456 5679999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHH
Q 037414 425 QDVAKIRDLM 434 (577)
Q Consensus 425 ~~A~~~~~~m 434 (577)
++|.+.+++.
T Consensus 101 ~~A~~~l~~~ 110 (112)
T d1hxia_ 101 NAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999864
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.21 E-value=3.8e-06 Score=73.19 Aligned_cols=106 Identities=8% Similarity=-0.114 Sum_probs=69.5
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHH
Q 037414 304 PNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALL 381 (577)
Q Consensus 304 p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll 381 (577)
|+...+......+...|++++|...|...++. -+.+...|..+..+|.+.|++++|...|++. .+.| +..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence 45555555666667777777777777766643 1234566666777777777777777777665 4555 344677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCchhH
Q 037414 382 GACRIHKNVDLAEMAAKSLLERQPQNPGHY 411 (577)
Q Consensus 382 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 411 (577)
.++...|++++|...++++++..|.+...+
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l~p~~~~~~ 109 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNF 109 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccHHHH
Confidence 777777777777777777777666544333
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.18 E-value=6.1e-06 Score=69.01 Aligned_cols=86 Identities=12% Similarity=0.062 Sum_probs=53.2
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHH
Q 037414 351 LLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVA 428 (577)
Q Consensus 351 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 428 (577)
.|.+.|++++|...|++. ...| +...|..+...+...|++++|...++++++.+|.+..+|..++.+|...|++++|.
T Consensus 19 ~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~eA~ 98 (159)
T d1a17a_ 19 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAAL 98 (159)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHHHHH
Confidence 455666666666666655 2233 44466666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHhh
Q 037414 429 KIRDLMTR 436 (577)
Q Consensus 429 ~~~~~m~~ 436 (577)
..+++..+
T Consensus 99 ~~~~~a~~ 106 (159)
T d1a17a_ 99 RDYETVVK 106 (159)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665554
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.17 E-value=1.6e-05 Score=66.26 Aligned_cols=116 Identities=8% Similarity=-0.036 Sum_probs=91.4
Q ss_pred HHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCH
Q 037414 313 LYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNV 390 (577)
Q Consensus 313 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~ 390 (577)
...|.+.|++++|...|...++. -+-+...|..+...|...|++++|.+.|++. .+.| +..+|..+..++...|++
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHhhhcccc--chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCH
Confidence 45677889999999999988754 2335778888889999999999999999887 4455 456899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHH--hccCChhHHHHH
Q 037414 391 DLAEMAAKSLLERQPQNPGHYVLLSNVY--ANAGRWQDVAKI 430 (577)
Q Consensus 391 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~A~~~ 430 (577)
++|...++++++.+|.++..+..+..+. ...+.+++|...
T Consensus 95 ~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 95 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999988877766553 334445555543
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.14 E-value=1.8e-05 Score=73.39 Aligned_cols=173 Identities=10% Similarity=-0.026 Sum_probs=127.3
Q ss_pred CHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHhhhC----CCCCC-HHHHHHHHHHHhccCCHHHHHHHH
Q 037414 255 SIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSS----RVLPN-RITFVSLLYACSHTGLVEEGLRLF 329 (577)
Q Consensus 255 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~ 329 (577)
++++|..+|.+ ....|...|++++|.+.|.+..+. +-+++ ..+|..+...|.+.|++++|.+.+
T Consensus 32 ~~~~Aa~~y~~-----------aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~ 100 (290)
T d1qqea_ 32 KFEEAADLCVQ-----------AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (290)
T ss_dssp HHHHHHHHHHH-----------HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHH-----------HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 45666665544 467888999999999999988653 22222 357888899999999999999999
Q ss_pred HHhhHhcCCCCC----HHHHHHHHHHHHH-cCCHHHHHHHHHhC-------CCCCC-HhHHHHHHHHHHhcCCHHHHHHH
Q 037414 330 SSMWDDFAVRPD----VKHYTCMVDLLGR-AGRLDEALKLIESM-------SVEKD-EGLWGALLGACRIHKNVDLAEMA 396 (577)
Q Consensus 330 ~~m~~~~~~~p~----~~~~~~li~~~~~-~g~~~~A~~~~~~m-------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~ 396 (577)
+...+-+.-..+ ...+..+...|.. .|++++|.+.+++. +..+. ..++..+...+...|++++|...
T Consensus 101 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~ 180 (290)
T d1qqea_ 101 ENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDI 180 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHH
Confidence 987653211112 3455566666644 69999999999876 11111 23678888899999999999999
Q ss_pred HHHHHhcCCCCch-------hHHHHHHHHhccCChhHHHHHHHHHhhCC
Q 037414 397 AKSLLERQPQNPG-------HYVLLSNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 397 ~~~~~~~~p~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
++++.+..|.++. .+...+..+...|+++.|.+.+++..+..
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~ 229 (290)
T d1qqea_ 181 YSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED 229 (290)
T ss_dssp HHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-
T ss_pred HHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 9999998766542 34566777888999999999998876543
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.13 E-value=1.4e-05 Score=69.02 Aligned_cols=87 Identities=15% Similarity=0.074 Sum_probs=80.2
Q ss_pred HHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHH
Q 037414 350 DLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAK 429 (577)
Q Consensus 350 ~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 429 (577)
..+...|++++|.+.|+++. .|+..+|..+...+...|++++|+..|+++++.+|+++..|..+..+|.+.|++++|.+
T Consensus 13 ~~~~~~~d~~~Al~~~~~i~-~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~ 91 (192)
T d1hh8a_ 13 VLAADKKDWKGALDAFSAVQ-DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIK 91 (192)
T ss_dssp HHHHHTTCHHHHHHHHHTSS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHH
Confidence 34678999999999999985 67888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhC
Q 037414 430 IRDLMTRR 437 (577)
Q Consensus 430 ~~~~m~~~ 437 (577)
.|++....
T Consensus 92 ~~~kAl~~ 99 (192)
T d1hh8a_ 92 DLKEALIQ 99 (192)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99887653
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.07 E-value=3.8e-05 Score=64.74 Aligned_cols=133 Identities=13% Similarity=0.042 Sum_probs=92.4
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHH
Q 037414 273 SWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLL 352 (577)
Q Consensus 273 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 352 (577)
.+......+.+.|++++|+..|.+.+..- |.. .+..+.-......+ ...+|+-+..+|
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~--~~~------------~~~~~~~~~~~~~~--------~~~~~~nla~~y 72 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWL--EYE------------SSFSNEEAQKAQAL--------RLASHLNLAMCH 72 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTC------------CCCCSHHHHHHHHH--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHh--hhc------------cccchHHHhhhchh--------HHHHHHHHHHHH
Confidence 34455667777788888888877766421 000 00000000011111 023566678889
Q ss_pred HHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHH
Q 037414 353 GRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDV 427 (577)
Q Consensus 353 ~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 427 (577)
.+.|++++|+..+++. .+.| ++..|..+..++...|++++|...|+++++++|+++.....+..+..+.+...+.
T Consensus 73 ~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~ 149 (170)
T d1p5qa1 73 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 149 (170)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999887 4456 6778999999999999999999999999999999999888888887666555543
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.02 E-value=1.8e-05 Score=62.43 Aligned_cols=104 Identities=16% Similarity=-0.015 Sum_probs=79.7
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCH---HHHHHHHHhC-CCCCCH---hHHHHHHH
Q 037414 310 VSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRL---DEALKLIESM-SVEKDE---GLWGALLG 382 (577)
Q Consensus 310 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~---~~A~~~~~~m-~~~p~~---~~~~~ll~ 382 (577)
..+++.+...+++++|.+.|+..++. -+.+..++.-+..++.+.++. ++|.++++++ ...|+. .+|..+..
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~--~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAA--GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 35677788888999999999988753 234567777788888775554 5688888886 444533 26778888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 037414 383 ACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLS 415 (577)
Q Consensus 383 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 415 (577)
+|...|++++|++.++++++.+|++..+...+.
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~ 113 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELER 113 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 999999999999999999999999876655443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.01 E-value=0.00068 Score=61.23 Aligned_cols=225 Identities=14% Similarity=0.018 Sum_probs=142.9
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHh----cCCHHHHHHHHHhccC
Q 037414 193 QFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAK----CGSIDSAREIFDRMRQ 268 (577)
Q Consensus 193 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~----~g~~~~A~~~~~~~~~ 268 (577)
+..+..|...+.+.|++++|.+.|++..+.+ +...+..|..+|.. ..+...|...+....+
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---------------~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~ 66 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---------------ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACD 66 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---------------CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccc
Confidence 3445555566666777777777777654322 33344445666655 4567777777776654
Q ss_pred C-ChhhHHHHHHHHHH----cCChHHHHHHHHHhhhCCCCCCHHHHHHHHHH--HhccCCHHHHHHHHHHhhHhcCCCCC
Q 037414 269 K-NVISWSAMIAAYGY----HGQGKKALDLFPMMLSSRVLPNRITFVSLLYA--CSHTGLVEEGLRLFSSMWDDFAVRPD 341 (577)
Q Consensus 269 ~-~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a--~~~~g~~~~a~~~~~~m~~~~~~~p~ 341 (577)
+ +...+..+...+.. ..+.+.|...++.....|.......+ ..... .........+...+..... ..+
T Consensus 67 ~~~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l-~~~~~~~~~~~~~~~~a~~~~~~~~~----~~~ 141 (265)
T d1ouva_ 67 LNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASL-GGIYHDGKVVTRDFKKAVEYFTKACD----LND 141 (265)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHH-HHHHHHCSSSCCCHHHHHHHHHHHHH----TTC
T ss_pred ccccchhhccccccccccccchhhHHHHHHHhhhhhhhhhhHHHhh-cccccCCCcccchhHHHHHHhhhhhc----ccc
Confidence 3 44445555554443 45678888888888777643222221 11111 2234556777777776643 245
Q ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCchhHHH
Q 037414 342 VKHYTCMVDLLGR----AGRLDEALKLIESMSVEKDEGLWGALLGACRI----HKNVDLAEMAAKSLLERQPQNPGHYVL 413 (577)
Q Consensus 342 ~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~ 413 (577)
...+..|...|.. ..+...+..+++...-..+......+...+.. ..+.+.|+..|++..+.+ ++..+..
T Consensus 142 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~ 219 (265)
T d1ouva_ 142 GDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--NGGGCFN 219 (265)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--CHHHHHH
T ss_pred cchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccchhhhhhhHhhhhccc--CHHHHHH
Confidence 5666677777765 45667777777766323466666666655554 568999999999998886 4567888
Q ss_pred HHHHHhc----cCChhHHHHHHHHHhhCCC
Q 037414 414 LSNVYAN----AGRWQDVAKIRDLMTRRRL 439 (577)
Q Consensus 414 l~~~~~~----~g~~~~A~~~~~~m~~~g~ 439 (577)
|..+|.+ ..+.++|.+.|++-.+.|-
T Consensus 220 LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 220 LGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 9988876 4489999999999887774
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.92 E-value=0.00013 Score=61.31 Aligned_cols=64 Identities=8% Similarity=-0.125 Sum_probs=58.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCC
Q 037414 375 GLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 375 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
.+|..+..+|.+.|++++|+..++++++.+|.++.+|..++.+|...|++++|...++...+..
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 126 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY 126 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 3567778889999999999999999999999999999999999999999999999999987643
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.91 E-value=0.0064 Score=56.28 Aligned_cols=146 Identities=13% Similarity=0.144 Sum_probs=87.0
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHh
Q 037414 90 TNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACR 169 (577)
Q Consensus 90 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 169 (577)
||..--..+.+.+-+.|.++.|..+|..+. -|..++..+.+.+++..|.+++.+.- +..+|..+..+|.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~-----d~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~~~l~ 80 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS-----NFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACV 80 (336)
T ss_dssp C----------------CTTTHHHHHHHTT-----CHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCC-----CHHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHHHHHH
Confidence 444445556677778888888888887664 37778888888888888888776441 4567878888887
Q ss_pred cCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHH
Q 037414 170 DRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDM 249 (577)
Q Consensus 170 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~ 249 (577)
+......+ .+.......+......++..|-..|.+++...+++.....+ ..+..+++-|+..
T Consensus 81 ~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-------------~~~~~~~~~L~~l 142 (336)
T d1b89a_ 81 DGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-------------RAHMGMFTELAIL 142 (336)
T ss_dssp HTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-------------TCCHHHHHHHHHH
T ss_pred hCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-------------ccchHHHHHHHHH
Confidence 76655443 22223334455566778888888888888888888654321 2355677788888
Q ss_pred HHhcCCHHHHHHHHHh
Q 037414 250 YAKCGSIDSAREIFDR 265 (577)
Q Consensus 250 ~~~~g~~~~A~~~~~~ 265 (577)
|++.+. ++-.+.+..
T Consensus 143 yak~~~-~kl~e~l~~ 157 (336)
T d1b89a_ 143 YSKFKP-QKMREHLEL 157 (336)
T ss_dssp HHTTCH-HHHHHHHHH
T ss_pred HHHhCh-HHHHHHHHh
Confidence 888653 333333333
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.82 E-value=0.00016 Score=60.61 Aligned_cols=92 Identities=12% Similarity=0.033 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhcc
Q 037414 344 HYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANA 421 (577)
Q Consensus 344 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 421 (577)
.|.-+..+|.+.|++++|+..++.. .+.| +...|..+..++...|++++|...++++++++|+++.+...+..+....
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~ 145 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKA 145 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 4556777889999999999999887 3344 6668999999999999999999999999999999998888887777665
Q ss_pred CChh-HHHHHHHHHh
Q 037414 422 GRWQ-DVAKIRDLMT 435 (577)
Q Consensus 422 g~~~-~A~~~~~~m~ 435 (577)
+... ...+++..|-
T Consensus 146 ~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 146 KEHNERDRRTYANMF 160 (168)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHH
Confidence 5544 3445555554
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.80 E-value=0.00026 Score=58.17 Aligned_cols=63 Identities=13% Similarity=-0.070 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhC
Q 037414 375 GLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRR 437 (577)
Q Consensus 375 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 437 (577)
.+|..+..++.+.|++++|+..++++++.+|.+..+|..++.+|...|++++|...|+...+.
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 356677788889999999999999999999999999999999999999999999999887653
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.76 E-value=5.6e-05 Score=59.51 Aligned_cols=93 Identities=9% Similarity=-0.012 Sum_probs=76.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCC--chhHHHHHHHH
Q 037414 346 TCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHK---NVDLAEMAAKSLLERQPQN--PGHYVLLSNVY 418 (577)
Q Consensus 346 ~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~ 418 (577)
..++..+...+++++|++.|++. ...| +..++..+..++.+.+ +.++|+.+++++++.+|.+ ..++..|+.+|
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 45777888999999999999988 4445 5668888888887654 4567999999999988754 34788999999
Q ss_pred hccCChhHHHHHHHHHhhCC
Q 037414 419 ANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 419 ~~~g~~~~A~~~~~~m~~~g 438 (577)
.+.|++++|.+.+++..+..
T Consensus 83 ~~~g~~~~A~~~~~~aL~~~ 102 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQTE 102 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhhhHHHHHHHHHHHHhC
Confidence 99999999999999998643
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.73 E-value=0.00013 Score=61.31 Aligned_cols=129 Identities=10% Similarity=0.003 Sum_probs=89.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-CHHHHHHHHHHH
Q 037414 274 WSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP-DVKHYTCMVDLL 352 (577)
Q Consensus 274 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~ 352 (577)
+......+...|++++|++.|++.+.. +..........+.. .+.| ....|..+..+|
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~------------~~~~~~~~~~~~~~----------~~~~~~~~~~~nla~~~ 87 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRY------------VEGSRAAAEDADGA----------KLQPVALSCVLNIGACK 87 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH------------HHHHHHHSCHHHHG----------GGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh------------hhhhhhhhhhHHHH----------HhChhhHHHHHHHHHHH
Confidence 445566677888888888888776531 00000001111100 1112 345667778889
Q ss_pred HHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCCh
Q 037414 353 GRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRW 424 (577)
Q Consensus 353 ~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 424 (577)
.+.|++++|+..+++. .+.| +...|..+..++...|++++|+..|+++++.+|+++..+..+..++.+....
T Consensus 88 ~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~ 161 (169)
T d1ihga1 88 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQ 161 (169)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999887 5566 5568999999999999999999999999999999988888777766544333
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.70 E-value=0.0002 Score=58.87 Aligned_cols=122 Identities=8% Similarity=-0.028 Sum_probs=88.7
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHhhhCCC----CCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHH
Q 037414 272 ISWSAMIAAYGYHGQGKKALDLFPMMLSSRV----LPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTC 347 (577)
Q Consensus 272 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~----~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ 347 (577)
..+......+.+.|++.+|+..|.+.+..-. .++.... ..... ....+|.-
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~-----------------~~~~~--------~~~~~~~N 72 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILL-----------------DKKKN--------IEISCNLN 72 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHH-----------------HHHHH--------HHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHH-----------------Hhhhh--------HHHHHHhh
Confidence 3566667778888888888888888765310 0111100 00000 11346667
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 037414 348 MVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVY 418 (577)
Q Consensus 348 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 418 (577)
+...|.+.|++++|++.+++. .+.| +..+|..+..++...|++++|...|+++++.+|.++.+...+..+.
T Consensus 73 la~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~ 145 (153)
T d2fbna1 73 LATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV 145 (153)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 888899999999999999887 4455 6679999999999999999999999999999999988766655443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.67 E-value=8.5e-05 Score=59.11 Aligned_cols=91 Identities=11% Similarity=0.098 Sum_probs=74.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch-------hHHHHH
Q 037414 345 YTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPG-------HYVLLS 415 (577)
Q Consensus 345 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~l~ 415 (577)
+--+...|.+.|++++|.+.|++. .+.| +...|..+..+|...|++++|+..++++++.+|+++. +|..+.
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 334567788999999999999887 3344 5778899999999999999999999999998877665 455666
Q ss_pred HHHhccCChhHHHHHHHHHh
Q 037414 416 NVYANAGRWQDVAKIRDLMT 435 (577)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~m~ 435 (577)
..+...+++++|.+.+..-.
T Consensus 87 ~~~~~~~~~~~A~~~~~kal 106 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSL 106 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHH
Confidence 77888899999999997664
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.66 E-value=0.00013 Score=56.40 Aligned_cols=90 Identities=10% Similarity=-0.098 Sum_probs=77.1
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CcchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 037414 126 WSVMVGGFSKVADFINCFETFREFIRCGMQL-DSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYA 204 (577)
Q Consensus 126 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 204 (577)
+-.+...+.+.|++++|+..|++..+. .| +...|..+..++.+.+++++|...+++.++.. |.+..++..|...|.
T Consensus 19 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~ 95 (112)
T d1hxia_ 19 PMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 95 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhccc--ccccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHH
Confidence 344566788899999999999999885 34 56778888888999999999999999999875 567889999999999
Q ss_pred hCCCHHHHHHHHhh
Q 037414 205 KCKVIDDARQLFDQ 218 (577)
Q Consensus 205 ~~g~~~~A~~~~~~ 218 (577)
..|++++|.+.|++
T Consensus 96 ~~g~~~~A~~~l~~ 109 (112)
T d1hxia_ 96 NEHNANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHH
Confidence 99999999999876
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.65 E-value=0.00023 Score=60.15 Aligned_cols=115 Identities=13% Similarity=-0.012 Sum_probs=81.5
Q ss_pred HHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCH--HHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHH
Q 037414 314 YACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRL--DEALKLIESMSVEKDEGLWGALLGACRIHKNVD 391 (577)
Q Consensus 314 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~ 391 (577)
......|++++|.+.|...++- .++... . .+ ..+.+ .++.. ++. .....+..+...+...|+++
T Consensus 19 ~~~~~~g~~e~A~~~~~~AL~l---~rG~~l----~-~~-~~~~w~~~~r~~-l~~----~~~~a~~~la~~~~~~g~~~ 84 (179)
T d2ff4a2 19 VHAAAAGRFEQASRHLSAALRE---WRGPVL----D-DL-RDFQFVEPFATA-LVE----DKVLAHTAKAEAEIACGRAS 84 (179)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTT---CCSSTT----G-GG-TTSTTHHHHHHH-HHH----HHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhh---Cccccc----c-cC-cchHHHHHHHHH-HHH----HHHHHHHHHHHHHHHCCCch
Confidence 4667788888888888888743 222110 0 00 00111 11111 111 12346788889999999999
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhh-----CCCccC
Q 037414 392 LAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTR-----RRLKKI 442 (577)
Q Consensus 392 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~~~ 442 (577)
+|...++++++.+|.+...|..++.+|...|++++|.+.|+++.+ .|+.|.
T Consensus 85 ~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~ 140 (179)
T d2ff4a2 85 AVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG 140 (179)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence 999999999999999999999999999999999999999998754 466543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.63 E-value=0.015 Score=51.76 Aligned_cols=91 Identities=11% Similarity=0.018 Sum_probs=49.1
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhc----CCChHHHHHHHHHHHHcCCCCcHHHHHH
Q 037414 123 SVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRD----RKDIVMGRLIHDIVLKSGLDIDQFVCAA 198 (577)
Q Consensus 123 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 198 (577)
+..+..|...+.+.+++++|++.|++..+.| |...+..|-..+.. ..+...+...+....+.+ +......
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~ 75 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 75 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhc
Confidence 3455555556666777777777777776654 33444444444433 456666766666666554 2223333
Q ss_pred HHHHHHh----CCCHHHHHHHHhhC
Q 037414 199 LVDMYAK----CKVIDDARQLFDQM 219 (577)
Q Consensus 199 li~~~~~----~g~~~~A~~~~~~m 219 (577)
|...+.. ..+.+.|...++..
T Consensus 76 l~~~~~~~~~~~~~~~~a~~~~~~a 100 (265)
T d1ouva_ 76 LGNLYYSGQGVSQNTNKALQYYSKA 100 (265)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred cccccccccccchhhHHHHHHHhhh
Confidence 3333332 34455555555543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.62 E-value=0.00035 Score=58.41 Aligned_cols=65 Identities=8% Similarity=-0.114 Sum_probs=59.8
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhC
Q 037414 373 DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRR 437 (577)
Q Consensus 373 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 437 (577)
+...|..+..++.+.|++++|+..++++++.+|.++.+|..++.+|...|++++|.+.++...+.
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 34477778888999999999999999999999999999999999999999999999999988864
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.62 E-value=0.00084 Score=55.96 Aligned_cols=63 Identities=6% Similarity=-0.102 Sum_probs=57.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCC
Q 037414 376 LWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 376 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
+|..+..++.+.|++++|+..++++++++|.+..+|..++.+|...|++++|...++...+..
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~ 128 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 128 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 566677788999999999999999999999999999999999999999999999999987643
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.60 E-value=0.023 Score=52.45 Aligned_cols=202 Identities=10% Similarity=0.015 Sum_probs=123.3
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 037414 73 IFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRC 152 (577)
Q Consensus 73 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 152 (577)
.+.|..++..+. -|..++..|.+.+++..|.+++.+.. +..+|..+...+.+.....-| .+...
T Consensus 30 ye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~~--~~~~~k~~~~~l~~~~e~~la-----~i~~~ 93 (336)
T d1b89a_ 30 YDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLA-----QMCGL 93 (336)
T ss_dssp TTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHHHH-----HHTTT
T ss_pred HHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHcC--CHHHHHHHHHHHHhCcHHHHH-----HHHHH
Confidence 667777776432 26677888889999999988887653 567898889888887765443 22233
Q ss_pred CCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCC-CChhHHHHHH
Q 037414 153 GMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPT-RDLVTWTVMI 231 (577)
Q Consensus 153 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~~i 231 (577)
....+......++..|-..|.+++...+++..... -..+..+++-|+.+|++.+. ++-.+.+..... -|... ++
T Consensus 94 ~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~~-~kl~e~l~~~s~~y~~~k---~~ 168 (336)
T d1b89a_ 94 HIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFKP-QKMREHLELFWSRVNIPK---VL 168 (336)
T ss_dssp TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTCH-HHHHHHHHHHSTTSCHHH---HH
T ss_pred HhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhCh-HHHHHHHHhccccCCHHH---HH
Confidence 34456666778889999999999988888877643 25677888999999998763 444444444322 11110 00
Q ss_pred hcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHhhh
Q 037414 232 GANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLS 299 (577)
Q Consensus 232 ~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 299 (577)
. .-.....|.-++-.|.+.|.+++|..+.-.-. +++......+..+.+.++++...++.....+
T Consensus 169 ~---~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~~-~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~ 232 (336)
T d1b89a_ 169 R---AAEQAHLWAELVFLYDKYEEYDNAIITMMNHP-TDAWKEGQFKDIITKVANVELYYRAIQFYLE 232 (336)
T ss_dssp H---HHHTTTCHHHHHHHHHHTTCHHHHHHHHHHST-TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHH
T ss_pred H---HHHHcCChHHHHHHHHhcCCHHHHHHHHHHcc-hhhhhHHHHHHHHHccCChHHHHHHHHHHHH
Confidence 0 00122234455666666666666655433321 2222334455556666666655555544443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.25 E-value=0.0014 Score=51.63 Aligned_cols=56 Identities=9% Similarity=-0.113 Sum_probs=25.0
Q ss_pred HHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhh
Q 037414 277 MIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMW 333 (577)
Q Consensus 277 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 333 (577)
+...|.+.|++++|+..|++.++.+ +.+...+..+..+|.+.|++++|.+.++.++
T Consensus 10 ~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 65 (128)
T d1elra_ 10 LGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAI 65 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHH
Confidence 3344444444444444444444431 1233344444444444444444444444443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.17 E-value=0.0008 Score=54.48 Aligned_cols=75 Identities=17% Similarity=0.191 Sum_probs=46.4
Q ss_pred HHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcC-----------CHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCCh
Q 037414 358 LDEALKLIESM-SVEK-DEGLWGALLGACRIHK-----------NVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRW 424 (577)
Q Consensus 358 ~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g-----------~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 424 (577)
+++|.+.|++. .+.| +..+|..+..++...| +++.|.+.|+++++.+|++...+..|...
T Consensus 57 ~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~------- 129 (145)
T d1zu2a1 57 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT------- 129 (145)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHH-------
Confidence 34455555444 2333 3335555555544332 46889999999999999987665555444
Q ss_pred hHHHHHHHHHhhCCC
Q 037414 425 QDVAKIRDLMTRRRL 439 (577)
Q Consensus 425 ~~A~~~~~~m~~~g~ 439 (577)
.+|.+++.+..+.|+
T Consensus 130 ~ka~~~~~e~~k~~~ 144 (145)
T d1zu2a1 130 AKAPQLHAEAYKQGL 144 (145)
T ss_dssp HTHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHhc
Confidence 356677777766664
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.17 E-value=5.3e-05 Score=76.03 Aligned_cols=131 Identities=9% Similarity=-0.072 Sum_probs=71.1
Q ss_pred HhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 037414 251 AKCGSIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLR 327 (577)
Q Consensus 251 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 327 (577)
...+.++.|...+....+ ++...|..+...+.+.|+.++|...+.+.... .| ..++..+...+...|++++|..
T Consensus 97 ~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~~-~~~~~~LG~l~~~~~~~~~A~~ 173 (497)
T d1ya0a1 97 AASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY--IC-QHCLVHLGDIARYRNQTSQAES 173 (497)
T ss_dssp HHHHHHHHHHHHHTC-------------------------------CCHHHHH--HH-HHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC--CH-HHHHHHHHHHHHHcccHHHHHH
Confidence 345566666666665433 34556777778888888888888777665432 11 2456677788888888888888
Q ss_pred HHHHhhHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhC-C-CCCCHhHHHHHHHHHHhc
Q 037414 328 LFSSMWDDFAVRPD-VKHYTCMVDLLGRAGRLDEALKLIESM-S-VEKDEGLWGALLGACRIH 387 (577)
Q Consensus 328 ~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~ 387 (577)
.|.+.++ +.|+ ...|+.|...|...|+..+|...|.+. . ..|...++..|...+.+.
T Consensus 174 ~y~~A~~---l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~ 233 (497)
T d1ya0a1 174 YYRHAAQ---LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKA 233 (497)
T ss_dssp HHHHHHH---HCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHH
T ss_pred HHHHHHH---HCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Confidence 8888874 3454 578888888888888888888888776 2 245666777777665543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.12 E-value=0.0013 Score=54.02 Aligned_cols=87 Identities=15% Similarity=-0.055 Sum_probs=63.4
Q ss_pred HHHHHcCCHHHHHHHHHhC----CCCCC----------HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---------
Q 037414 350 DLLGRAGRLDEALKLIESM----SVEKD----------EGLWGALLGACRIHKNVDLAEMAAKSLLERQPQ--------- 406 (577)
Q Consensus 350 ~~~~~~g~~~~A~~~~~~m----~~~p~----------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--------- 406 (577)
..+.+.|++++|++.|++. +..|+ ...|+.+..++...|++++|...+++.++..|.
T Consensus 17 ~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~ 96 (156)
T d2hr2a1 17 QRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEG 96 (156)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccccccccccc
Confidence 3455667777777776665 21222 346778888889999999999988888765321
Q ss_pred --CchhHHHHHHHHhccCChhHHHHHHHHHhh
Q 037414 407 --NPGHYVLLSNVYANAGRWQDVAKIRDLMTR 436 (577)
Q Consensus 407 --~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 436 (577)
...+|..+..+|...|++++|...|++..+
T Consensus 97 ~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 97 KLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 123577889999999999999999998765
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.07 E-value=0.0017 Score=48.04 Aligned_cols=73 Identities=16% Similarity=0.047 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC----C----CCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 037414 344 HYTCMVDLLGRAGRLDEALKLIESM----S----VEKD-EGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLL 414 (577)
Q Consensus 344 ~~~~li~~~~~~g~~~~A~~~~~~m----~----~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 414 (577)
.+--+...+.+.|++++|...|++. + ..++ ..++..+..++.+.|++++|+..++++++.+|+++.++..+
T Consensus 7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl 86 (95)
T d1tjca_ 7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHH
Confidence 3445666777788888888777665 1 1222 34788899999999999999999999999999998887776
Q ss_pred HH
Q 037414 415 SN 416 (577)
Q Consensus 415 ~~ 416 (577)
..
T Consensus 87 ~~ 88 (95)
T d1tjca_ 87 KY 88 (95)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.06 E-value=7.5e-05 Score=74.84 Aligned_cols=94 Identities=12% Similarity=-0.037 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhc
Q 037414 342 VKHYTCMVDLLGRAGRLDEALKLIESMSVEKD-EGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYAN 420 (577)
Q Consensus 342 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 420 (577)
...+..+...+.+.|+.++|...++..- .++ ..++..+...+...|++++|+..++++.+..|++..+|+.|+.+|..
T Consensus 120 ~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~ 198 (497)
T d1ya0a1 120 RVKSSQLGIISNKQTHTSAIVKPQSSSC-SYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASS 198 (497)
T ss_dssp -----------------------CCHHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHhCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 4445555666667777777665554431 111 23555666667777777777777777777777777777777777777
Q ss_pred cCChhHHHHHHHHHhh
Q 037414 421 AGRWQDVAKIRDLMTR 436 (577)
Q Consensus 421 ~g~~~~A~~~~~~m~~ 436 (577)
.|+..+|...+.+-..
T Consensus 199 ~~~~~~A~~~y~ral~ 214 (497)
T d1ya0a1 199 KGDHLTTIFYYCRSIA 214 (497)
T ss_dssp TTCHHHHHHHHHHHHS
T ss_pred cCCHHHHHHHHHHHHh
Confidence 7777777777665544
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.00 E-value=0.0049 Score=51.60 Aligned_cols=87 Identities=10% Similarity=0.069 Sum_probs=48.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccC--CCh-----------------------hhHHHHHHHHHHcCChHHHHHHHHHhhh
Q 037414 245 AVIDMYAKCGSIDSAREIFDRMRQ--KNV-----------------------ISWSAMIAAYGYHGQGKKALDLFPMMLS 299 (577)
Q Consensus 245 ~Li~~~~~~g~~~~A~~~~~~~~~--~~~-----------------------~~~~~li~~~~~~g~~~~A~~l~~~m~~ 299 (577)
.........|++++|...|.+... ++. ..+..+...+...|++++|+..++++..
T Consensus 16 ~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~ 95 (179)
T d2ff4a2 16 TAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTF 95 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 344577889999999999988654 111 1234444455555555555555555544
Q ss_pred CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 037414 300 SRVLPNRITFVSLLYACSHTGLVEEGLRLFSSM 332 (577)
Q Consensus 300 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 332 (577)
.. +-+...+..++.+|...|+.++|.+.|+.+
T Consensus 96 ~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~ 127 (179)
T d2ff4a2 96 EH-PYREPLWTQLITAYYLSDRQSDALGAYRRV 127 (179)
T ss_dssp HS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred hC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 31 224444555555555555555555555444
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.97 E-value=0.00032 Score=56.98 Aligned_cols=85 Identities=11% Similarity=0.025 Sum_probs=57.9
Q ss_pred HHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHh----------cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhc
Q 037414 353 GRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRI----------HKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYAN 420 (577)
Q Consensus 353 ~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~----------~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 420 (577)
-+.+.+++|.+.|+.. ...| +..++..+..++.. .+.+++|+..++++++.+|+++.+|..+..+|..
T Consensus 8 ~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~ 87 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 87 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHH
Confidence 3444555666655555 2233 33344444444432 3456889999999999999999999999999987
Q ss_pred cCC-----------hhHHHHHHHHHhhC
Q 037414 421 AGR-----------WQDVAKIRDLMTRR 437 (577)
Q Consensus 421 ~g~-----------~~~A~~~~~~m~~~ 437 (577)
.|+ +++|.+.|+...+.
T Consensus 88 ~g~~~~~~~~~~~~~~~A~~~~~kal~l 115 (145)
T d1zu2a1 88 FAFLTPDETEAKHNFDLATQFFQQAVDE 115 (145)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhHHHHHHhHHHhhhhhhccccc
Confidence 664 57788888777653
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.80 E-value=0.0023 Score=57.47 Aligned_cols=125 Identities=11% Similarity=0.000 Sum_probs=72.9
Q ss_pred HHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC-HHHHHHHHHHHHHcCCHHH
Q 037414 282 GYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD-VKHYTCMVDLLGRAGRLDE 360 (577)
Q Consensus 282 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~ 360 (577)
.+.|++++|+..+++.++.. +-|...+..+...++..|++++|.+.++...+ +.|+ ...+..+...+...+..++
T Consensus 7 L~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~---l~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHhccccHH
Confidence 34677777777777777652 34556677777777777777777777777764 3454 3333344444443343443
Q ss_pred HHHHHHhC--CCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchh
Q 037414 361 ALKLIESM--SVEKD-EGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGH 410 (577)
Q Consensus 361 A~~~~~~m--~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 410 (577)
+..-.... ...|+ ...+......+...|+.++|...++++.+..|..+..
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~ 135 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFL 135 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcc
Confidence 33222211 11222 2233333455667788888888888888777776543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.73 E-value=0.0074 Score=49.11 Aligned_cols=64 Identities=16% Similarity=-0.014 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhC--------CCCCC-----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 037414 343 KHYTCMVDLLGRAGRLDEALKLIESM--------SVEKD-----EGLWGALLGACRIHKNVDLAEMAAKSLLERQPQ 406 (577)
Q Consensus 343 ~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 406 (577)
..|+.+..+|.+.|++++|.+.+++. ...++ ...+..+..++...|++++|+..|++++++.|.
T Consensus 56 ~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~ 132 (156)
T d2hr2a1 56 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 132 (156)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 34556666677777777666665553 12222 125666778899999999999999999887544
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.54 E-value=0.05 Score=40.99 Aligned_cols=140 Identities=11% Similarity=0.069 Sum_probs=97.9
Q ss_pred HHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 037414 282 GYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEA 361 (577)
Q Consensus 282 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 361 (577)
.-.|..++..+++.+.... .+..-|+.++.-....-+-+-..+.++.+-+-+. ...++++...
T Consensus 13 ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FD--------------ls~C~Nlk~v 75 (161)
T d1wy6a1 13 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFD--------------LDKCQNLKSV 75 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSC--------------GGGCSCTHHH
T ss_pred HHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcC--------------chhhhcHHHH
Confidence 3456666666666666543 2445566666555555555555555555532222 1245566666
Q ss_pred HHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCCCc
Q 037414 362 LKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLK 440 (577)
Q Consensus 362 ~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 440 (577)
...+-.++ .+.......+......|+-+.-.++++.+.+.+..+|+...-+.++|.+-|...++.+++.+.-++|++
T Consensus 76 v~C~~~~n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 76 VECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 66655554 344556777888899999999999999999888888899999999999999999999999999999974
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.41 E-value=0.001 Score=59.88 Aligned_cols=120 Identities=11% Similarity=0.066 Sum_probs=82.4
Q ss_pred hccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHh-HHHHHHHHHHhcCCHHHHH
Q 037414 317 SHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEKDEG-LWGALLGACRIHKNVDLAE 394 (577)
Q Consensus 317 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~~~~a~ 394 (577)
.+.|++++|...+++.++. -+.+...+..+...|+..|++++|.+.++.. ...|+.. .+..+...+...+..+++.
T Consensus 7 L~~G~l~eAl~~l~~al~~--~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~ 84 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFA 84 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHH
Confidence 4679999999999999863 3446799999999999999999999999988 5566544 4444444443333333222
Q ss_pred HHHHHHHh-cCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCC
Q 037414 395 MAAKSLLE-RQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 395 ~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
........ .+|+....+......+...|+.++|.+.+++..+..
T Consensus 85 ~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~ 129 (264)
T d1zbpa1 85 QGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 129 (264)
T ss_dssp TSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 11111111 123333455566778899999999999999887654
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.88 E-value=0.011 Score=43.26 Aligned_cols=63 Identities=10% Similarity=-0.054 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------chhHHHHHHHHhccCChhHHHHHHHHHhhCC
Q 037414 376 LWGALLGACRIHKNVDLAEMAAKSLLERQPQN-------PGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 376 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
.+-.+...+.+.|+++.|+..++++++..|.+ ..++..|..+|.+.|++++|.+.+++..+..
T Consensus 7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~ 76 (95)
T d1tjca_ 7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence 34467778899999999999999998875443 3578899999999999999999999988643
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=92.43 E-value=1.5 Score=32.71 Aligned_cols=138 Identities=12% Similarity=0.026 Sum_probs=98.1
Q ss_pred HHhcCCHHHHHHHHHhccC-CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 037414 250 YAKCGSIDSAREIFDRMRQ-KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRL 328 (577)
Q Consensus 250 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 328 (577)
+.-.|.+++..++..+... .+..-||-+|.-....-+-+-..+.++..-.. .|. ...+++......
T Consensus 12 ~ildG~ve~Gveii~k~~~ss~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FDl----------s~C~Nlk~vv~C 78 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVVEC 78 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHHHH
T ss_pred HHHhhhHHhHHHHHHHHcccCCccccceeeeecccccchHHHHHHHHHHhhh---cCc----------hhhhcHHHHHHH
Confidence 4457899999999988765 55666888888777777777766666665432 111 122333333333
Q ss_pred HHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 037414 329 FSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM--SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQ 406 (577)
Q Consensus 329 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 406 (577)
+-.+ ..+.+.....++.+..+|+-+.-.+++..+ .-+|++...-.+..+|.+.|+..++-+++.++-+.+..
T Consensus 79 ~~~~------n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 79 GVIN------NTLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHT------TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHh------cchHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 3333 234566777788899999999999998884 44788888889999999999999999999998876643
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=92.23 E-value=4.8 Score=37.89 Aligned_cols=259 Identities=10% Similarity=-0.053 Sum_probs=127.4
Q ss_pred HHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCC---CChhHHHHHHhc--CCCCcc
Q 037414 165 IRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPT---RDLVTWTVMIGA--NKFLLD 239 (577)
Q Consensus 165 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~~i~~--~g~~~~ 239 (577)
+..+.+.++++.....+ ...+.+...-..+..+..+.|+.++|.+.+..+-. ..+...+.+... .+-..+
T Consensus 79 l~~L~~~~~w~~~~~~~-----~~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~~~lt 153 (450)
T d1qsaa1 79 VNELARREDWRGLLAFS-----PEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQD 153 (450)
T ss_dssp HHHHHHTTCHHHHHHHC-----CSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSC
T ss_pred HHHHHhccCHHHHHHhc-----cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCCCC
Confidence 34455566655433222 12244555555666777777777776665543311 111111222111 111223
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhc-
Q 037414 240 VILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSH- 318 (577)
Q Consensus 240 ~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~- 318 (577)
...+-.-+......|+...|..+...+...........+.... ++..+...... ..++......+..++.+
T Consensus 154 ~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~---~p~~~~~~~~~-----~~~~~~~~~~~~~~l~rl 225 (450)
T d1qsaa1 154 PLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVLTFART-----TGATDFTRQMAAVAFASV 225 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHHHHH-----SCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHh---ChHhHHHHHhc-----CCCChhhhHHHHHHHHHH
Confidence 3333344556666788888888887776544444444444432 22222222221 11222322223333322
Q ss_pred -cCCHHHHHHHHHHhhHhcCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHHhcCCHHHHH
Q 037414 319 -TGLVEEGLRLFSSMWDDFAVRPDVK--HYTCMVDLLGRAGRLDEALKLIESM-SVEKDEGLWGALLGACRIHKNVDLAE 394 (577)
Q Consensus 319 -~g~~~~a~~~~~~m~~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~ 394 (577)
..+.+.+..++..........++.. ....+...+...+..+.|..++... ....+.....-.+......+++..+.
T Consensus 226 a~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~~al~~~~~~~~~ 305 (450)
T d1qsaa1 226 ARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGTGDRRGLN 305 (450)
T ss_dssp HHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred hccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHHHHHHcCChHHHH
Confidence 2456677777776654433322211 1111222223345566666666554 11223333333444455667777777
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhh
Q 037414 395 MAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTR 436 (577)
Q Consensus 395 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 436 (577)
..+..+-......+....-+..++...|+.++|...+.....
T Consensus 306 ~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~ 347 (450)
T d1qsaa1 306 TWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (450)
T ss_dssp HHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence 776655332223345556677778888888888877777643
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=91.08 E-value=1.1 Score=34.16 Aligned_cols=50 Identities=10% Similarity=-0.052 Sum_probs=29.2
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhc----cCChhHHHHHHHHHhhCCC
Q 037414 388 KNVDLAEMAAKSLLERQPQNPGHYVLLSNVYAN----AGRWQDVAKIRDLMTRRRL 439 (577)
Q Consensus 388 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~ 439 (577)
.|.++|.+.|++..+.+. +.....|..+|.. ..+.++|.++++.-.+.|.
T Consensus 73 ~d~~~A~~~~~~aa~~g~--~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 73 KDLRKAAQYYSKACGLND--QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp CCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred hhhHHHHHHHhhhhccCc--chHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 355666666666665542 3455556666554 3466677777766665553
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=91.08 E-value=1.8 Score=32.82 Aligned_cols=112 Identities=13% Similarity=-0.024 Sum_probs=64.5
Q ss_pred ChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHH----cCCHHHH
Q 037414 286 QGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGR----AGRLDEA 361 (577)
Q Consensus 286 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A 361 (577)
++++|+.+|++..+.|.. . ....|. .....+.++|.++++...+. | +......|-..|.. ..+.++|
T Consensus 8 d~~~A~~~~~kaa~~g~~-~--a~~~l~--~~~~~~~~~a~~~~~~aa~~-g---~~~a~~~Lg~~y~~g~~~~~d~~~A 78 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNEM-F--GCLSLV--SNSQINKQKLFQYLSKACEL-N---SGNGCRFLGDFYENGKYVKKDLRKA 78 (133)
T ss_dssp HHHHHHHHHHHHHHTTCT-T--HHHHHH--TCTTSCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHHCCCh-h--hhhhhc--cccccCHHHHHHHHhhhhcc-c---chhhhhhHHHhhhhccccchhhHHH
Confidence 456777777776666522 1 122222 23345677777777776542 3 33444444455543 3467788
Q ss_pred HHHHHhCCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCC
Q 037414 362 LKLIESMSVEKDEGLWGALLGACRI----HKNVDLAEMAAKSLLERQPQ 406 (577)
Q Consensus 362 ~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~ 406 (577)
.++|++.-..-++.....|...|.. ..|.++|.+.+++..+.+.+
T Consensus 79 ~~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~~ 127 (133)
T d1klxa_ 79 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 127 (133)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCCH
Confidence 8888776222344445555555544 45788888888888776643
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.35 E-value=0.67 Score=34.90 Aligned_cols=47 Identities=9% Similarity=0.048 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhcCCCCc-hhHHHHHHHHhccCChhHHHHHHHHHhh
Q 037414 390 VDLAEMAAKSLLERQPQNP-GHYVLLSNVYANAGRWQDVAKIRDLMTR 436 (577)
Q Consensus 390 ~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 436 (577)
.++|+.+++++.+.+|.+. ..+..|..+|.+.|++++|.+.++.+.+
T Consensus 54 ~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 54 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 3455555555555444432 3444555555555555555555555443
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=89.05 E-value=9.1 Score=35.79 Aligned_cols=315 Identities=10% Similarity=-0.006 Sum_probs=163.5
Q ss_pred HHHHHHHHHcCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCCh
Q 037414 95 ANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDI 174 (577)
Q Consensus 95 ~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 174 (577)
-...+..+++.++++.....+..-+ .+...--....+..+.|+.++|.+.+...-..|.. .......+..
T Consensus 75 r~~~l~~L~~~~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~-~p~~c~~l~~-------- 144 (450)
T d1qsaa1 75 QSRFVNELARREDWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFS-------- 144 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHH--------
T ss_pred HHHHHHHHHhccCHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-CchHHHHHHH--------
Confidence 3444667788888888777664432 23443445667778889988888887776655421 2222333333
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhc-----------CCCCcchhhH
Q 037414 175 VMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA-----------NKFLLDVILG 243 (577)
Q Consensus 175 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~-----------~g~~~~~~~~ 243 (577)
.+.+.| ..+...+-.-+......|+...|..+...+...........+.. .....+....
T Consensus 145 --------~~~~~~-~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~p~~~~~~~~~~~~~~~~~ 215 (450)
T d1qsaa1 145 --------VWRASG-KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTGATDFTR 215 (450)
T ss_dssp --------HHHHTT-CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHH
T ss_pred --------HHHhcC-CCCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhChHhHHHHHhcCCCChhhh
Confidence 333333 22333333344444555666666666665543221111111111 0111122222
Q ss_pred HHHHHHHHh--cCCHHHHHHHHHhccC---CChhhHHHH----HHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 037414 244 TAVIDMYAK--CGSIDSAREIFDRMRQ---KNVISWSAM----IAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLY 314 (577)
Q Consensus 244 ~~Li~~~~~--~g~~~~A~~~~~~~~~---~~~~~~~~l----i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 314 (577)
..+..++.+ ..+.+.|...+..... .+..-+..+ ...+...+..+.+...+......+. +.......+.
T Consensus 216 ~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~w~~~ 293 (450)
T d1qsaa1 216 QMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ--STSLIERRVR 293 (450)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC--CHHHHHHHHH
T ss_pred HHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccccc--chHHHHHHHH
Confidence 222222222 2466677777766543 111112221 2222334556677777666655432 3333333444
Q ss_pred HHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCC---------------------
Q 037414 315 ACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKD--------------------- 373 (577)
Q Consensus 315 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~--------------------- 373 (577)
.....++...+...+..|... ......-.--+..++...|+.++|...|......++
T Consensus 294 ~al~~~~~~~~~~~~~~l~~~--~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~ 371 (450)
T d1qsaa1 294 MALGTGDRRGLNTWLARLPME--AKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKA 371 (450)
T ss_dssp HHHHHTCHHHHHHHHHHSCTT--GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCC
T ss_pred HHHHcCChHHHHHHHHhcCcc--cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcCCChHHHHHHHHcCCCCCCCcCCC
Confidence 445567777777777776421 112233334455667777888888777765410110
Q ss_pred ----HhH-----HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHH
Q 037414 374 ----EGL-----WGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLM 434 (577)
Q Consensus 374 ----~~~-----~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 434 (577)
... -..-+..+...|....|.+.+..+.+.. ++.-...+.....+.|.++.|.......
T Consensus 372 ~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~--~~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 372 PQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp CSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred CccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 000 0112344667788888888877776543 3456667777888888888887766544
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.90 E-value=3.2 Score=30.99 Aligned_cols=71 Identities=11% Similarity=0.047 Sum_probs=46.0
Q ss_pred CCHHHHHHHHHHHHHcC---CHHHHHHHHHhC-CCCC-CH-hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchh
Q 037414 340 PDVKHYTCMVDLLGRAG---RLDEALKLIESM-SVEK-DE-GLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGH 410 (577)
Q Consensus 340 p~~~~~~~li~~~~~~g---~~~~A~~~~~~m-~~~p-~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 410 (577)
|++.+--...-++.+.. +++++..++++. ...| +. ..|-.|.-+|.+.|+++.|.+.++.+++.+|.+..+
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA 109 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 109 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHH
Confidence 44444444445555543 345677777666 2233 22 355667777888889999999999999998888643
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=85.60 E-value=4.5 Score=28.53 Aligned_cols=47 Identities=15% Similarity=0.179 Sum_probs=37.5
Q ss_pred CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 037414 369 SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLS 415 (577)
Q Consensus 369 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 415 (577)
.+-|++.+..+.+.+|++.+|+..|.++++-+...--.+...|-.++
T Consensus 36 DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~~~k~~y~yil 82 (105)
T d1v54e_ 36 DLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 82 (105)
T ss_dssp SBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 56799999999999999999999999999988766533345665543
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=83.09 E-value=2.7 Score=29.66 Aligned_cols=63 Identities=13% Similarity=0.226 Sum_probs=50.0
Q ss_pred ChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHH
Q 037414 286 QGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVD 350 (577)
Q Consensus 286 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 350 (577)
+.-++.+-++.+......|++....+.+.||.+.+++..|.++|+....+. .++...|..+++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~--~~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCcHHHHHHHHH
Confidence 455777778888888889999999999999999999999999999886543 344556766654
|