Citrus Sinensis ID: 037428

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------16
Protein Sequence
MEVIGFRFGAEFEIRRKKKGIRMKQTPTFGSDLKIECLLWNSNNPTAYRIDPIRVSPNNQTQAVKAVFYLTVHIRLEQLLVSFKVLCPERADEELVDQKKYFEEACKPKCVKPLLEYQACVKRIQGDESGHKHCTGQYFDYWSCIDKCVAVKLFQKLK
Secondary Structure (PSIPRED)
ccEEcEEcccEEEEEEEccccccccccccccccccEEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHcHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cEEEEEEcccEEEEEEccccEEEccccccccccEEEEEEEccccccEEEEcccEEccccccHHEEEEEEEEEEEHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHccHHHHHHHcc
Coil and Loop (DISEMBL)
mevigfrfgaEFEIRRKKKgirmkqtptfgsdlkIECLLwnsnnptayridpirvspnnqtQAVKAVFYLTVHIRLEQLLVSFKVlcperadeELVDQKKYFeeackpkcvkpllEYQACVKRiqgdesghkhctgqyfdywSCIDKCVAVKLFQKLK
Flexible Loop (DISEMBL)
mevigfrfgaefeirrkkkgirmkqtptfgsdlkieCLLWNSNNPTAYRIDPIRVSPNNQTQAVKAVFYLTVHIRLEQLLVSFKVLCPERADEELVDQKKYfeeackpkcvkPLLEYQACVKRIQGDESGHKHCTGQYFDYWSCIDKCVAVKLFQKLK
Low Complexity Region (SEG)
MEVIGFRFGAEFEIRRKKKGIRMKQTPTFGSDLKIECLLWNSNNPTAYRIDPIRVSPNNQTQAVKAVFYLTVHIRLEQLLVSFKVLCPERADEELVDQKKYFEEACKPKCVKPLLEYQACVKRIQGDESGHKHCTGQYFDYWSCIDKCVAVKLFQKLK
Disordered region (IsUnstruct)
***IGFRFGAEFEIRRKKKGIRMKQTPTFGSDLKIECLLWNSNNPTAYRIDPIRVSPNNQTQAVKAVFYLTVHIRLEQLLVSFKVLCPERADEELVDQKKYFEEACKPKCVKPLLEYQACVKRIQGDESGHKHCTGQYFDYWSCIDKCVAVKLFQ***
Disordered Region (DISOPRED)
*EVIGFRFGAEFEIRRK***************LKIECLLWNSNNPTAYRID***********AVKAVFYLTVHIRLEQLLVSFKVLC******ELVDQKKYFEEACKPKCVKPLLEYQACVKR*********HCTGQYFDYWSCIDKCVAVKLFQKLK
Disordered Region (DISEMBL)
MEVIGFRFGAEFEIRRKKKGIRMKQTPTFGSDLKIECLLWNSNNPTAYRIDPIRVSPNNQTQAVKAVFYLTVHIRLEQLLVSFKVLCPERADEELVDQKKYFEEACKPKCVKPLLEYQACVKRIQGDESGHKHCTGQYFDYWSCIDKCVAVKLFQKLK
Disordered Region (DISPRO)
MEVIGFRFGAEFEIRRKKKGIRMKQTPTFGSDLKIECLLWNSNNPTAYRIDPIRVSPNNQTQAVKAVFYLTVHIRLEQLLVSFKVLCPERADEELVDQKKYFEEACKPKCVKPLLEYQACVKRIQGDESGHKHCTGQYFDYWSCIDKCVAVKLFQKLK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEVIGFRFGAEFEIRRKKKGIRMKQTPTFGSDLKIECLLWNSNNPTAYRIDPIRVSPNNQTQAVKAVFYLTVHIRLEQLLVSFKVLCPERADEELVDQKKYFEEACKPKCVKPLLEYQACVKRIQGDESGHKHCTGQYFDYWSCIDKCVAVKLFQKLK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	158	2.2.26 [Sep-21-2011]
P48504	69	Cytochrome b-c1 complex s	N/A	no	0.430	0.985	0.735	2e-24
Q1ZXP3	69	Probable cytochrome b-c1	yes	no	0.379	0.869	0.426	4e-05

>sp|P48504|QCR6_SOLTU Cytochrome b-c1 complex subunit 6 OS=Solanum tuberosum PE=1 SV=2

 Score =  111 bits (277), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 50/68 (73%), Positives = 56/68 (82%)

Query: 91  ADEELVDQKKYFEEACKPKCVKPLLEYQACVKRIQGDESGHKHCTGQYFDYWSCIDKCVA 150
           +DEE+VD K   E +CKPKCV+ L EYQAC KR++GDESGHKHCTGQYFDYW CIDKCVA
Sbjct: 2   SDEEVVDPKATLEVSCKPKCVRQLKEYQACTKRVEGDESGHKHCTGQYFDYWHCIDKCVA 61

Query: 151 VKLFQKLK 158
            KLF  LK
Sbjct: 62  AKLFDHLK 69

This is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain. This protein may mediate formation of the complex between cytochromes c and c1.
Solanum tuberosum (taxid: 4113)

>sp|Q1ZXP3|QCR6_DICDI Probable cytochrome b-c1 complex subunit 6 OS=Dictyostelium discoideum GN=uqcrh PE=3 SV=1

 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 99  KKYFEEACKPKCVKPLLEYQACVKRIQGDESGHK-HCTGQYFDYWSCIDKCVAVKLFQKL 157
           K   +E C   C K    YQAC  R+   E   K +C GQ+ ++  CIDKCV  KLF +L
Sbjct: 9   KGPIQEGCASGCEKSWSAYQACSGRVAKLEHDEKANCLGQFLEHVQCIDKCVGPKLFAQL 68

Query: 158 K 158
           K
Sbjct: 69  K 69

This is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain. This protein may mediate formation of the complex between cytochromes c and c1.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	158
224062898	84	predicted protein [Populus trichocarpa]	0.436	0.821	0.869	1e-28
224085103	69	predicted protein [Populus trichocarpa]	0.430	0.985	0.897	2e-28
449445858	69	PREDICTED: cytochrome b-c1 complex subun	0.430	0.985	0.897	2e-28
224062894	69	predicted protein [Populus trichocarpa]	0.430	0.985	0.867	3e-28
297844414	69	predicted protein [Arabidopsis lyrata su	0.436	1.0	0.869	3e-28
15218058	69	Ubiquinol-cytochrome C reductase hinge p	0.430	0.985	0.867	1e-27
356525910	69	PREDICTED: cytochrome b-c1 complex subun	0.430	0.985	0.867	2e-27
356558587	69	PREDICTED: cytochrome b-c1 complex subun	0.430	0.985	0.852	4e-27
21554004	69	putative ubiquinol--cytochrome-c reducta	0.430	0.985	0.852	5e-27
357445693	154	Cytochrome b-c1 complex subunit [Medicag	0.481	0.493	0.763	6e-27

>gi|224062898|ref|XP_002300924.1| predicted protein [Populus trichocarpa] gi|222842650|gb|EEE80197.1| predicted protein [Populus trichocarpa]

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 60/69 (86%), Positives = 65/69 (94%)

Query: 90  RADEELVDQKKYFEEACKPKCVKPLLEYQACVKRIQGDESGHKHCTGQYFDYWSCIDKCV 149
           RADEELVDQKKY E++CKPKCVKPLLEY+ACVKR++GDESGHKHCTGQYFDYW CIDKCV
Sbjct: 16  RADEELVDQKKYLEDSCKPKCVKPLLEYEACVKRVEGDESGHKHCTGQYFDYWYCIDKCV 75

Query: 150 AVKLFQKLK 158
           A KLF KLK
Sbjct: 76  APKLFSKLK 84

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224085103|ref|XP_002307493.1| predicted protein [Populus trichocarpa] gi|222856942|gb|EEE94489.1| predicted protein [Populus trichocarpa]

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 61/68 (89%), Positives = 63/68 (92%)

Query: 91  ADEELVDQKKYFEEACKPKCVKPLLEYQACVKRIQGDESGHKHCTGQYFDYWSCIDKCVA 150
           ADEE VD KKY EEACKPKCV+PLLEYQACVKRIQGDESGHKHCTGQYFDYWSC+DKCVA
Sbjct: 2   ADEEPVDPKKYLEEACKPKCVRPLLEYQACVKRIQGDESGHKHCTGQYFDYWSCVDKCVA 61

Query: 151 VKLFQKLK 158
            KLF KLK
Sbjct: 62  PKLFTKLK 69

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445858|ref|XP_004140689.1| PREDICTED: cytochrome b-c1 complex subunit 6-like [Cucumis sativus] gi|449528698|ref|XP_004171340.1| PREDICTED: cytochrome b-c1 complex subunit 6-like [Cucumis sativus]

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 61/68 (89%), Positives = 63/68 (92%)

Query: 91  ADEELVDQKKYFEEACKPKCVKPLLEYQACVKRIQGDESGHKHCTGQYFDYWSCIDKCVA 150
           ADEE VDQK+Y EEACKPKCVKPLLEYQACVKRIQGD+SGHKHCTGQYFDYWSCIDKCVA
Sbjct: 2   ADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVA 61

Query: 151 VKLFQKLK 158
            KL  KLK
Sbjct: 62  PKLLTKLK 69

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224062894|ref|XP_002300923.1| predicted protein [Populus trichocarpa] gi|222842649|gb|EEE80196.1| predicted protein [Populus trichocarpa]

 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 59/68 (86%), Positives = 64/68 (94%)

Query: 91  ADEELVDQKKYFEEACKPKCVKPLLEYQACVKRIQGDESGHKHCTGQYFDYWSCIDKCVA 150
           ADEE VD KKY EE+CKPKCV+PLLEYQACVKRIQGDE+GHKHCTGQYFDYWSC+DKCVA
Sbjct: 2   ADEEPVDPKKYLEESCKPKCVRPLLEYQACVKRIQGDETGHKHCTGQYFDYWSCVDKCVA 61

Query: 151 VKLFQKLK 158
           +KLF KLK
Sbjct: 62  LKLFSKLK 69

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297844414|ref|XP_002890088.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297335930|gb|EFH66347.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 60/69 (86%), Positives = 64/69 (92%)

Query: 90  RADEELVDQKKYFEEACKPKCVKPLLEYQACVKRIQGDESGHKHCTGQYFDYWSCIDKCV 149
           RAD+E+VD KKY EE+CKPKCVKPLLEYQACVKRIQGD+SGHKHCTGQYFDYW CIDKCV
Sbjct: 1   RADDEVVDPKKYLEESCKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWHCIDKCV 60

Query: 150 AVKLFQKLK 158
           A KLF KLK
Sbjct: 61  APKLFAKLK 69

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15218058|ref|NP_172964.1| Ubiquinol-cytochrome C reductase hinge protein [Arabidopsis thaliana] gi|110740918|dbj|BAE98555.1| ubiquinol-cytochrome-c reductase like protein [Arabidopsis thaliana] gi|114050691|gb|ABI49495.1| At1g15120 [Arabidopsis thaliana] gi|227204459|dbj|BAH57081.1| AT1G15120 [Arabidopsis thaliana] gi|332191146|gb|AEE29267.1| Ubiquinol-cytochrome C reductase hinge protein [Arabidopsis thaliana]

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 59/68 (86%), Positives = 63/68 (92%)

Query: 91  ADEELVDQKKYFEEACKPKCVKPLLEYQACVKRIQGDESGHKHCTGQYFDYWSCIDKCVA 150
           AD+E+VD KKY EE+CKPKCVKPLLEYQACVKRIQGD+SGHKHCTGQYFDYW CIDKCVA
Sbjct: 2   ADDEVVDPKKYLEESCKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWQCIDKCVA 61

Query: 151 VKLFQKLK 158
            KLF KLK
Sbjct: 62  PKLFAKLK 69

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525910|ref|XP_003531564.1| PREDICTED: cytochrome b-c1 complex subunit 6 [Glycine max] gi|255628593|gb|ACU14641.1| unknown [Glycine max]

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 59/68 (86%), Positives = 62/68 (91%)

Query: 91  ADEELVDQKKYFEEACKPKCVKPLLEYQACVKRIQGDESGHKHCTGQYFDYWSCIDKCVA 150
           ADEE VDQK+Y EE+CKPKCVKPLLEYQAC+KRI GDESG KHCTGQYFDYWSCIDKCVA
Sbjct: 2   ADEEPVDQKRYLEESCKPKCVKPLLEYQACIKRIHGDESGQKHCTGQYFDYWSCIDKCVA 61

Query: 151 VKLFQKLK 158
            KLF KLK
Sbjct: 62  PKLFTKLK 69

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356558587|ref|XP_003547586.1| PREDICTED: cytochrome b-c1 complex subunit 6 [Glycine max] gi|255630456|gb|ACU15586.1| unknown [Glycine max]

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 58/68 (85%), Positives = 62/68 (91%)

Query: 91  ADEELVDQKKYFEEACKPKCVKPLLEYQACVKRIQGDESGHKHCTGQYFDYWSCIDKCVA 150
           ADEE VDQK+Y EE+CKPKCVKPLLEYQAC+KRI GD+SG KHCTGQYFDYWSCIDKCVA
Sbjct: 2   ADEEPVDQKRYLEESCKPKCVKPLLEYQACIKRIHGDDSGQKHCTGQYFDYWSCIDKCVA 61

Query: 151 VKLFQKLK 158
            KLF KLK
Sbjct: 62  PKLFTKLK 69

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21554004|gb|AAM63085.1| putative ubiquinol--cytochrome-c reductase [Arabidopsis thaliana]

 Score =  125 bits (315), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 58/68 (85%), Positives = 62/68 (91%)

Query: 91  ADEELVDQKKYFEEACKPKCVKPLLEYQACVKRIQGDESGHKHCTGQYFDYWSCIDKCVA 150
           AD+E+VD KKY EE+CKPKCVKPLLEYQACVKRIQ D+SGHKHCTGQYFDYW CIDKCVA
Sbjct: 2   ADDEVVDPKKYLEESCKPKCVKPLLEYQACVKRIQSDDSGHKHCTGQYFDYWQCIDKCVA 61

Query: 151 VKLFQKLK 158
            KLF KLK
Sbjct: 62  PKLFAKLK 69

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357445693|ref|XP_003593124.1| Cytochrome b-c1 complex subunit [Medicago truncatula] gi|355482172|gb|AES63375.1| Cytochrome b-c1 complex subunit [Medicago truncatula]

 Score =  125 bits (314), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 58/76 (76%), Positives = 63/76 (82%)

Query: 83  FKVLCPERADEELVDQKKYFEEACKPKCVKPLLEYQACVKRIQGDESGHKHCTGQYFDYW 142
           F   C  RADEE VD KK  EE+CKPKCV+PLLEYQAC+KRIQGD+SG KHCTGQYFDYW
Sbjct: 79  FGFYCEFRADEEPVDPKKLLEESCKPKCVRPLLEYQACIKRIQGDDSGQKHCTGQYFDYW 138

Query: 143 SCIDKCVAVKLFQKLK 158
            C+DKCVA KLF KLK
Sbjct: 139 YCVDKCVAPKLFTKLK 154

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	158
TAIR|locus:2045730	62	AT2G01090 "AT2G01090" [Arabido	0.379	0.967	0.85	8.2e-28
TAIR|locus:2037838	166	AT1G15120 [Arabidopsis thalian	0.367	0.349	0.879	2.2e-27
GENEDB_PFALCIPARUM|PF14_0248	88	PF14_0248 "ubiquinol-cytochrom	0.436	0.784	0.414	3.2e-10
UNIPROTKB|Q8ILJ5	88	PF14_0248 "Cytochrome b-c1 com	0.436	0.784	0.414	3.2e-10
DICTYBASE|DDB_G0271774	69	uqcrh "ubiquinol-cytochrome-c	0.354	0.811	0.438	8.7e-08
UNIPROTKB|F1NHW5	74	UQCRH "Cytochrome b-c1 complex	0.443	0.945	0.388	1.1e-07
RGD|1305987	89	Uqcrh "ubiquinol-cytochrome c	0.443	0.786	0.375	1.1e-07
UNIPROTKB|E2RR27	91	UQCRH "Cytochrome b-c1 complex	0.443	0.769	0.375	2.3e-07
UNIPROTKB|P07919	91	UQCRH "Cytochrome b-c1 complex	0.443	0.769	0.375	2.9e-07
UNIPROTKB|F1S3W0	91	UQCRH "Cytochrome b-c1 complex	0.443	0.769	0.361	2.9e-07

TAIR|locus:2045730 AT2G01090 "AT2G01090" [Arabidopsis thaliana (taxid:3702)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 51/60 (85%), Positives = 58/60 (96%)

Query:    92 DEELVDQKKYFEEACKPKCVKPLLEYQACVKRIQGDESGHKHCTGQYFDYWSCIDKCVAV 151
             +E++VDQK+YFEE+CKPKCVKPLLEYQACVKRIQ DESGHKHCTGQYFDYW C+DKCV+V
Sbjct:     3 EEDVVDQKRYFEESCKPKCVKPLLEYQACVKRIQDDESGHKHCTGQYFDYWHCVDKCVSV 62

GO:0005750 "mitochondrial respiratory chain complex III" evidence=ISS

GO:0006122 "mitochondrial electron transport, ubiquinol to cytochrome c" evidence=ISS

GO:0008121 "ubiquinol-cytochrome-c reductase activity" evidence=ISS

TAIR|locus:2037838 AT1G15120 [Arabidopsis thaliana (taxid:3702)]

 Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
 Identities = 51/58 (87%), Positives = 55/58 (94%)

Query:    91 ADEELVDQKKYFEEACKPKCVKPLLEYQACVKRIQGDESGHKHCTGQYFDYWSCIDKC 148
             AD+E+VD KKY EE+CKPKCVKPLLEYQACVKRIQGD+SGHKHCTGQYFDYW CIDKC
Sbjct:    69 ADDEVVDPKKYLEESCKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWQCIDKC 126

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005750 "mitochondrial respiratory chain complex III" evidence=ISS

GO:0006122 "mitochondrial electron transport, ubiquinol to cytochrome c" evidence=ISS

GO:0008121 "ubiquinol-cytochrome-c reductase activity" evidence=ISS

GO:0006096 "glycolysis" evidence=RCA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0009060 "aerobic respiration" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

GENEDB_PFALCIPARUM|PF14_0248 PF14_0248 "ubiquinol-cytochrome c reductase hinge protein, putative" [Plasmodium falciparum (taxid:5833)]

 Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
 Identities = 29/70 (41%), Positives = 41/70 (58%)

Query:    89 ERADEE-LVDQKKYFEEACKPKCVKPLLEYQACVKRIQGDESGHKHCTGQYFDYWSCIDK 147
             ER +++  VD +   E+ C  KCV+P+ EYQ CV R++       +C GQY + + CID 
Sbjct:    18 ERDEKDRTVDPRIELEKKCAVKCVRPVNEYQNCVSRVRARTDNKGNCLGQYEELYICIDH 77

Query:   148 CVAVKLFQKL 157
             CVA  LF  L
Sbjct:    78 CVAKDLFNYL 87

GO:0005750 "mitochondrial respiratory chain complex III" evidence=ISS

UNIPROTKB|Q8ILJ5 PF14_0248 "Cytochrome b-c1 complex subunit 6" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
 Identities = 29/70 (41%), Positives = 41/70 (58%)

Query:    89 ERADEE-LVDQKKYFEEACKPKCVKPLLEYQACVKRIQGDESGHKHCTGQYFDYWSCIDK 147
             ER +++  VD +   E+ C  KCV+P+ EYQ CV R++       +C GQY + + CID 
Sbjct:    18 ERDEKDRTVDPRIELEKKCAVKCVRPVNEYQNCVSRVRARTDNKGNCLGQYEELYICIDH 77

Query:   148 CVAVKLFQKL 157
             CVA  LF  L
Sbjct:    78 CVAKDLFNYL 87

GO:0005750 "mitochondrial respiratory chain complex III" evidence=ISS

DICTYBASE|DDB_G0271774 uqcrh "ubiquinol-cytochrome-c reductase hinge protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
 Identities = 25/57 (43%), Positives = 32/57 (56%)

Query:   103 EEACKPKCVKPLLEYQACVKRIQGDESGHK-HCTGQYFDYWSCIDKCVAVKLFQKLK 158
             +E C   C K    YQAC  R+   E   K +C GQ+ ++  CIDKCV  KLF +LK
Sbjct:    13 QEGCASGCEKSWSAYQACSGRVAKLEHDEKANCLGQFLEHVQCIDKCVGPKLFAQLK 69

GO:0070469 "respiratory chain" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|F1NHW5 UQCRH "Cytochrome b-c1 complex subunit 6" [Gallus gallus (taxid:9031)]

 Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 28/72 (38%), Positives = 35/72 (48%)

Query:    89 ERADEELVDQKKYFEEACKP--KCVKPLLEYQACVKRIQGDESGHKHCTGQYFDYWSCID 146
             E  +EELVD      E C+   KCVK     + C  R+       + CT + FD+    D
Sbjct:     3 EEEEEELVDPLTTIREHCEQTEKCVKARERLELCDARVSSRSHTEEQCTEELFDFLHARD 62

Query:   147 KCVAVKLFQKLK 158
              CVA KLF KLK
Sbjct:    63 HCVAHKLFNKLK 74

GO:0006122 "mitochondrial electron transport, ubiquinol to cytochrome c" evidence=IEA

GO:0008121 "ubiquinol-cytochrome-c reductase activity" evidence=IEA

GO:0070469 "respiratory chain" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

RGD|1305987 Uqcrh "ubiquinol-cytochrome c reductase hinge protein" [Rattus norvegicus (taxid:10116)]

 Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 27/72 (37%), Positives = 37/72 (51%)

Query:    89 ERADEELVDQKKYFEEACKP--KCVKPLLEYQACVKRIQGDESGHKHCTGQYFDYWSCID 146
             E  +EELVD      E C+   KCVK     ++C +R+       + CT + FD+    D
Sbjct:    18 EEEEEELVDPLTTVREHCEQLEKCVKARERLESCDRRVSSRSQTEEDCTEELFDFLHARD 77

Query:   147 KCVAVKLFQKLK 158
              CVA KLF+ LK
Sbjct:    78 HCVAHKLFKSLK 89

GO:0005739 "mitochondrion" evidence=ISO

GO:0005743 "mitochondrial inner membrane" evidence=ISO

GO:0005750 "mitochondrial respiratory chain complex III" evidence=IDA

GO:0006122 "mitochondrial electron transport, ubiquinol to cytochrome c" evidence=IC

GO:0008121 "ubiquinol-cytochrome-c reductase activity" evidence=IEA

GO:0032403 "protein complex binding" evidence=IDA

GO:0051291 "protein heterooligomerization" evidence=IDA

UNIPROTKB|E2RR27 UQCRH "Cytochrome b-c1 complex subunit 6" [Canis lupus familiaris (taxid:9615)]

 Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 27/72 (37%), Positives = 35/72 (48%)

Query:    89 ERADEELVDQKKYFEEACKP--KCVKPLLEYQACVKRIQGDESGHKHCTGQYFDYWSCID 146
             E  +EELVD      E C+   KCVK     + C +R+       + CT + FD+    D
Sbjct:    20 EEEEEELVDPLTTVREQCEQLEKCVKARERLELCDQRVSSRSQTEEDCTEELFDFLHARD 79

Query:   147 KCVAVKLFQKLK 158
              CVA KLF  LK
Sbjct:    80 HCVAHKLFNSLK 91

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0070469 "respiratory chain" evidence=IEA

GO:0008121 "ubiquinol-cytochrome-c reductase activity" evidence=IEA

GO:0006122 "mitochondrial electron transport, ubiquinol to cytochrome c" evidence=IEA

UNIPROTKB|P07919 UQCRH "Cytochrome b-c1 complex subunit 6, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
 Identities = 27/72 (37%), Positives = 35/72 (48%)

Query:    89 ERADEELVDQKKYFEEACKP--KCVKPLLEYQACVKRIQGDESGHKHCTGQYFDYWSCID 146
             E  +EELVD      E C+   KCVK     + C +R+       + CT + FD+    D
Sbjct:    20 EEEEEELVDPLTTVREQCEQLEKCVKARERLELCDERVSSRSHTEEDCTEELFDFLHARD 79

Query:   147 KCVAVKLFQKLK 158
              CVA KLF  LK
Sbjct:    80 HCVAHKLFNNLK 91

GO:0006122 "mitochondrial electron transport, ubiquinol to cytochrome c" evidence=IEA

GO:0008121 "ubiquinol-cytochrome-c reductase activity" evidence=IEA

GO:0005750 "mitochondrial respiratory chain complex III" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

GO:0051291 "protein heterooligomerization" evidence=IEA

GO:0005746 "mitochondrial respiratory chain" evidence=TAS

GO:0055114 "oxidation-reduction process" evidence=TAS

GO:0006119 "oxidative phosphorylation" evidence=TAS

GO:0009060 "aerobic respiration" evidence=TAS

GO:0005743 "mitochondrial inner membrane" evidence=TAS

GO:0022904 "respiratory electron transport chain" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

UNIPROTKB|F1S3W0 UQCRH "Cytochrome b-c1 complex subunit 6" [Sus scrofa (taxid:9823)]

 Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
 Identities = 26/72 (36%), Positives = 35/72 (48%)

Query:    89 ERADEELVDQKKYFEEACKP--KCVKPLLEYQACVKRIQGDESGHKHCTGQYFDYWSCID 146
             E  +EELVD      E C+   KC+K     + C +R+       + CT + FD+    D
Sbjct:    20 EEEEEELVDPLTTVREQCEQIEKCIKARERLELCDQRVSSRSQTEEDCTEELFDFLHARD 79

Query:   147 KCVAVKLFQKLK 158
              CVA KLF  LK
Sbjct:    80 HCVAHKLFNSLK 91

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0070469 "respiratory chain" evidence=IEA

GO:0008121 "ubiquinol-cytochrome-c reductase activity" evidence=IEA

GO:0006122 "mitochondrial electron transport, ubiquinol to cytochrome c" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00020645 hypothetical protein (84 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	158
pfam02320	65	pfam02320, UCR_hinge, Ubiquinol-cytochrome C reduc	2e-26

>gnl|CDD|190277 pfam02320, UCR_hinge, Ubiquinol-cytochrome C reductase hinge protein

 Score = 94.3 bits (235), Expect = 2e-26
 Identities = 33/65 (50%), Positives = 38/65 (58%), Gaps = 2/65 (3%)

Query: 96  VDQKKYFEEAC--KPKCVKPLLEYQACVKRIQGDESGHKHCTGQYFDYWSCIDKCVAVKL 153
           VD K    E C  K KCVK   EYQ CV+R+    S  + CT + FDY  C+D CVA KL
Sbjct: 1   VDPKDTLREECKNKEKCVKAKHEYQECVERVNSRSSTKEDCTEELFDYLHCLDHCVAPKL 60

Query: 154 FQKLK 158
           F KLK
Sbjct: 61  FNKLK 65

The ubiquinol-cytochrome C reductase complex (cytochrome bc1 complex) is a respiratory multienzyme complex. This Pfam family represents the 'hinge' protein of the complex which is thought to mediate formation of the cytochrome c1 and cytochrome c complex. Length = 65

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	158
PF02320	65	UCR_hinge: Ubiquinol-cytochrome C reductase hinge	99.97
KOG4763	77	consensus Ubiquinol-cytochrome c reductase hinge p	99.94
PF05254	68	UPF0203: Uncharacterised protein family (UPF0203);	90.59
KOG3481	87	consensus Uncharacterized conserved protein [Funct	89.43
PLN03079	91	Uncharacterized protein At4g33100; Provisional	86.63

>PF02320 UCR_hinge: Ubiquinol-cytochrome C reductase hinge protein; InterPro: IPR023184 The ubiquinol-cytochrome C reductase complex (cytochrome bc1 complex) is a respiratory multienzyme complex []

Probab=99.97  E-value=9.6e-32  Score=187.51  Aligned_cols=63  Identities=44%  Similarity=0.911  Sum_probs=57.2

Q ss_pred             CChHHHHHHHh--hhhCcchHHHHHHHHhhhcCCCCCCCCchhhhhhhhhhhhhhhhhHHhhhhC
Q 037428           96 VDQKKYFEEAC--KPKCVKPLLEYQACVKRIQGDESGHKHCTGQYFDYWSCIDKCVAVKLFQKLK  158 (158)
Q Consensus        96 vDPk~~LREeC--~~kC~k~k~~YdeCvERV~s~~~tkE~CveEfFDllHCVDhCVAPKLF~kLK  158 (158)
                      |||++.||++|  .++|++++++|++|++||+++++++|||+||||||+|||||||||+||++||
T Consensus         1 VDp~~~lre~C~~~~~C~~~~~~y~~C~eRV~~~~~~~e~C~ee~fd~~hCvD~CvapklF~~LK   65 (65)
T PF02320_consen    1 VDPKDALREECKETPKCAKLKHHYDECVERVNSRSETKEDCVEEYFDLVHCVDHCVAPKLFKKLK   65 (65)
T ss_dssp             --HHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHCSSSSG-SHHHHHHHHHHHHHHHHHHHGGC--
T ss_pred             CCchHHHHHHhccchhhHHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHhhhHHHHHhcC
Confidence            79999999999  5999999999999999999999999999999999999999999999999998

The bc1 complex contains 11 subunits; 3 respiratory subunits (cytochrome B, cytochrome C1, Rieske protein), 2 core proteins and 6 low molecular weight proteins. This family represents the 'hinge' protein of the complex which is thought to mediate formation of the cytochrome c1 and cytochrome c complex. Proteins in this entry from an alpha-helical hairpin. This entry represents the structural domain found in these proteins.; PDB: 1BCC_H 1SQP_H 1SQB_H 1BE3_H 2A06_U 1L0L_H 2BCC_H 2FYU_H 1PPJ_U 2YBB_H ....

>KOG4763 consensus Ubiquinol-cytochrome c reductase hinge protein [Energy production and conversion]

Probab=99.94  E-value=3.2e-28  Score=175.65  Aligned_cols=70  Identities=63%  Similarity=1.211  Sum_probs=67.2

Q ss_pred             CccccccCChHHHHHHHhh--hhCcchHHHHHHHHhhhcCCCCCCCCchhhhhhhhhhhhhhhhhHHhhhhC
Q 037428           89 ERADEELVDQKKYFEEACK--PKCVKPLLEYQACVKRIQGDESGHKHCTGQYFDYWSCIDKCVAVKLFQKLK  158 (158)
Q Consensus        89 ~meEEE~vDPk~~LREeC~--~kC~k~k~~YdeCvERV~s~~~tkE~CveEfFDllHCVDhCVAPKLF~kLK  158 (158)
                      +|++|..+||+..+||.|+  ++|.+....|++|++||++++.|++||+|||||||||+|||||||||++||
T Consensus         6 ee~~E~vvDplt~~rE~C~~~~kcvK~~~~l~~C~~rv~s~s~tee~Ct~e~fDy~h~~DhCva~KlFa~LK   77 (77)
T KOG4763|consen    6 EEPEELVVDPLTYVRESCKQLPKCVKPLLELQACVKRVQSRSSTEEHCTGEYFDYWHCLDHCVAPKLFANLK   77 (77)
T ss_pred             hcchhhhccHHHHHHHHHHhhHHHhhHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            5667778899999999999  999999999999999999999999999999999999999999999999998

>PF05254 UPF0203: Uncharacterised protein family (UPF0203); InterPro: IPR007918 This is a family of small highly conserved proteins

Probab=90.59  E-value=0.22  Score=35.28  Aligned_cols=41  Identities=22%  Similarity=0.631  Sum_probs=32.9

Q ss_pred             hhCcchHHHHHHHHhhhc-----CCCCCCCCchhhhhhhhhhhhhh
Q 037428          108 PKCVKPLLEYQACVKRIQ-----GDESGHKHCTGQYFDYWSCIDKC  148 (158)
Q Consensus       108 ~kC~k~k~~YdeCvERV~-----s~~~tkE~CveEfFDllHCVDhC  148 (158)
                      |.|.+++..|+.|-.+==     .+......|..+|-+|..||..=
T Consensus         7 ~eC~~lK~~YD~CFn~WfsekfLkG~~~~~~C~~~~~~Y~~Cv~~a   52 (68)
T PF05254_consen    7 PECTELKEKYDQCFNKWFSEKFLKGDSSDNECGELFKEYQQCVQKA   52 (68)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHH
Confidence            789999999999987742     23444579999999999998653

In Saccharomyces cerevisiae (Baker's yeast) the gene YKL053C-A (MDM35) O60200 from SWISSPROT is one of the genes essential for maintenance of normal mitochondrial distribution and morphology (MDM) []; wherease in Homo sapiens (Human), p53CSV, O43715 from SWISSPROT is a direct transcriptional target for p53 and appears to be a cell-survival mediator in response to genotoxic stress including low-levels of DNA damage. It is suggested that p53CSV modulates the apoptotic pathway through interaction with HSP70 and Apaf-1 thereby inhibiting activation of procaspase-3 and procaspase-9 [].

>KOG3481 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.43  E-value=0.33  Score=36.56  Aligned_cols=42  Identities=21%  Similarity=0.592  Sum_probs=35.2

Q ss_pred             hhCcchHHHHHHHHhh-----hcCCCCCCCCchhhhhhhhhhhhhhh
Q 037428          108 PKCVKPLLEYQACVKR-----IQGDESGHKHCTGQYFDYWSCIDKCV  149 (158)
Q Consensus       108 ~kC~k~k~~YdeCvER-----V~s~~~tkE~CveEfFDllHCVDhCV  149 (158)
                      +.|.+++..|+.|-.+     +.++....+.|+.++-+|..||..=.
T Consensus        11 ~eCt~lk~~YD~CFn~Wf~eKflKG~~~~~pC~~l~k~Y~~Cv~kal   57 (87)
T KOG3481|consen   11 PECTDLKQKYDQCFNEWFSEKFLKGDSSGEPCSRLFKVYKQCVQKAL   57 (87)
T ss_pred             ccchHHHHHHHHHHHHHHHHHhcCCccccCcHHHHHHHHHHHHHHHH
Confidence            6899999999999655     45566788999999999999987644

>PLN03079 Uncharacterized protein At4g33100; Provisional

Probab=86.63  E-value=0.55  Score=35.55  Aligned_cols=42  Identities=17%  Similarity=0.563  Sum_probs=32.8

Q ss_pred             hhCcchHHHHHHHHhhhc-----CCCCCCCCchhhhhhhhhhhhhhh
Q 037428          108 PKCVKPLLEYQACVKRIQ-----GDESGHKHCTGQYFDYWSCIDKCV  149 (158)
Q Consensus       108 ~kC~k~k~~YdeCvERV~-----s~~~tkE~CveEfFDllHCVDhCV  149 (158)
                      +.|..++..|+.|=.|==     ++...+..|.+++-.|.+||..=.
T Consensus        16 ~eCtelK~~YD~CFN~WYsEkFLKG~~~~~eC~~~w~~Yq~Cv~~aL   62 (91)
T PLN03079         16 SPCAELRTAYHNCFNRWYSEKFVKGQWDKEDCVAEWHKYRACLSEHL   62 (91)
T ss_pred             cccHHHHHHHHHHHHHHHHHhhhcCCcccchHHHHHHHHHHHHHHHH
Confidence            469999999999988732     233446789999999999986543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	158
3cwb_H	77	Chicken Cytochrome Bc1 Complex Inhibited By An Iodi		1e-04
1bcc_H	78	Cytochrome Bc1 Complex From Chicken Length = 78		4e-04

>pdb|3CWB|H Chain H, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated Analogue Of The Polyketide Crocacin-d Length = 77

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 95  LVDQKKYFEEACK--PKCVKPLLEYQACVKRIQGDESGHKHCTGQYFDYWSCIDKCVAVK 152
           LVD      E C+   KCVK     + C  R+       + CT + FD+    D CVA K
Sbjct: 12  LVDPLTTIREHCEQTEKCVKARERLELCDARVSSRSHTEEQCTEELFDFLHARDHCVAHK 71
Query: 153 LFQKLK 158
           LF KLK
Sbjct: 72  LFNKLK 77

>pdb|1BCC|H Chain H, Cytochrome Bc1 Complex From Chicken Length = 78

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 95  LVDQKKYFEEACK--PKCVKPLLEYQACVKRIQGDESGHKHCTGQYFDYWSCIDKCVAVK 152
           LVD      E C+   KCVK     + C +R+       + CT + FD+    D CVA K
Sbjct: 13  LVDPLTTVREQCEQLEKCVKARERLELCDERVSSRSQTEEDCTEELFDFLHARDHCVAHK 72
Query: 153 LFQKLK 158
           LF  LK
Sbjct: 73  LFNSLK 78

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	158
3tgu_H	77	Mitochondrial ubiquinol-cytochrome C reductase 11	9e-28
1pp9_H	78	Ubiquinol-cytochrome C reductase complex 11 kDa P;	2e-27
3cx5_F	146	Cytochrome B-C1 complex subunit 6; complex III, el	8e-12

>3tgu_H Mitochondrial ubiquinol-cytochrome C reductase 11 protein, complex III subunit VIII...; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_H* 3h1i_H* 3h1h_H* 3h1k_H* 3h1l_H* 3h1j_H* 3l71_H* 3l72_H* 3l73_H* 3l74_H* 3l75_H* 3l70_H* Length = 77

 Score = 97.6 bits (243), Expect = 9e-28
 Identities = 28/73 (38%), Positives = 35/73 (47%), Gaps = 2/73 (2%)

Query: 88  PERADEELVDQKKYFEEACK--PKCVKPLLEYQACVKRIQGDESGHKHCTGQYFDYWSCI 145
            E  +EELVD      E C+   KCVK     + C  R+       + CT + FD+    
Sbjct: 5   GEEEEEELVDPLTTIREHCEQTEKCVKARERLELCDARVSSRSHTEEQCTEELFDFLHAR 64

Query: 146 DKCVAVKLFQKLK 158
           D CVA KLF KLK
Sbjct: 65  DHCVAHKLFNKLK 77

>1pp9_H Ubiquinol-cytochrome C reductase complex 11 kDa P; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.28.1.1 PDB: 1bgy_H* 1be3_H* 1l0n_H* 1ntk_H* 1ntm_H* 1ntz_H* 1nu1_H* 1l0l_H* 1ppj_H* 1sqb_H* 1sqp_H* 1sqq_H* 1sqv_H* 1sqx_H* 2a06_H* 2fyu_H* 2ybb_H* 1bcc_H* 2bcc_H* 3bcc_H* ... Length = 78

 Score = 96.9 bits (241), Expect = 2e-27
 Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 2/72 (2%)

Query: 89  ERADEELVDQKKYFEEACK--PKCVKPLLEYQACVKRIQGDESGHKHCTGQYFDYWSCID 146
           E  +EELVD      E C+   KCVK     + C +R+       + CT +  D+    D
Sbjct: 7   EEEEEELVDPLTTVREQCEQLEKCVKARERLELCDERVSSRSQTEEDCTEELLDFLHARD 66

Query: 147 KCVAVKLFQKLK 158
            CVA KLF  LK
Sbjct: 67  HCVAHKLFNSLK 78

>3cx5_F Cytochrome B-C1 complex subunit 6; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.28.1.1 PDB: 3cxh_F* 1ezv_H* 1kb9_F* 1p84_F* 2ibz_H* 1kyo_F* Length = 146

 Score = 58.8 bits (141), Expect = 8e-12
 Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 10/80 (12%)

Query: 89  ERADEELVDQKKYFEEACK--PKCVKPLLEYQACVKRIQGDESG--------HKHCTGQY 138
           E  +EE+ DQ +   E  K   +    +  Y+ C +R++  +           + C  ++
Sbjct: 67  EEEEEEVTDQLEDLREHFKNTEEGKALVHHYEECAERVKIQQQQPGYADLEHKEDCVEEF 126

Query: 139 FDYWSCIDKCVAVKLFQKLK 158
           F     +D   A +LF KLK
Sbjct: 127 FHLQHYLDTATAPRLFDKLK 146

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	158
3tgu_H	77	Mitochondrial ubiquinol-cytochrome C reductase 11	100.0
1pp9_H	78	Ubiquinol-cytochrome C reductase complex 11 kDa P;	99.98
3cx5_F	146	Cytochrome B-C1 complex subunit 6; complex III, el	99.96

>3tgu_H Mitochondrial ubiquinol-cytochrome C reductase 11 protein, complex III subunit VIII...; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_H* 3h1i_H* 3h1h_H* 3h1k_H* 3h1l_H* 3h1j_H* 3l71_H* 3l72_H* 3l73_H* 3l74_H* 3l75_H* 3l70_H*

Probab=100.00  E-value=3.1e-34  Score=205.05  Aligned_cols=71  Identities=39%  Similarity=0.690  Sum_probs=65.8

Q ss_pred             CCccccccCChHHHHHHHhh--hhCcchHHHHHHHHhhhcCCCCCCCCchhhhhhhhhhhhhhhhhHHhhhhC
Q 037428           88 PERADEELVDQKKYFEEACK--PKCVKPLLEYQACVKRIQGDESGHKHCTGQYFDYWSCIDKCVAVKLFQKLK  158 (158)
Q Consensus        88 p~meEEE~vDPk~~LREeC~--~kC~k~k~~YdeCvERV~s~~~tkE~CveEfFDllHCVDhCVAPKLF~kLK  158 (158)
                      |+.||||++||++.||++|+  ++|++++++|++|++||++++++++||+||||||+||+|||||||||++||
T Consensus         5 ~~eeEeE~vDp~~~lre~C~~~~~C~~~~~~y~~C~eRV~~~~~~~e~C~eE~Fd~~hCvD~CvapkLF~~LK   77 (77)
T 3tgu_H            5 GEEEEEELVDPLTTIREHCEQTEKCVKARERLELCDARVSSRSHTEEQCTEELFDFLHARDHCVAHKLFNKLK   77 (77)
T ss_dssp             ----CCCCCCHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHTCSSCCCCSHHHHHHHHHHHHHHHHHHHGGGCC
T ss_pred             CccccccccCHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHhhcHHHHHhcC
Confidence            56778899999999999999  799999999999999999999999999999999999999999999999998

>1pp9_H Ubiquinol-cytochrome C reductase complex 11 kDa P; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.28.1.1 PDB: 1bgy_H* 1be3_H* 1l0n_H* 1ntk_H* 1ntm_H* 1ntz_H* 1nu1_H* 1l0l_H* 1ppj_H* 1sqb_H* 1sqp_H* 1sqq_H* 1sqv_H* 1sqx_H* 2a06_H* 2fyu_H* 2ybb_H* 1bcc_H* 2bcc_H* 3bcc_H* ...

Probab=99.98  E-value=1.5e-33  Score=201.93  Aligned_cols=69  Identities=36%  Similarity=0.666  Sum_probs=63.3

Q ss_pred             ccccccCChHHHHHHHhh--hhCcchHHHHHHHHhhhcCCCCCCCCchhhhhhhhhhhhhhhhhHHhhhhC
Q 037428           90 RADEELVDQKKYFEEACK--PKCVKPLLEYQACVKRIQGDESGHKHCTGQYFDYWSCIDKCVAVKLFQKLK  158 (158)
Q Consensus        90 meEEE~vDPk~~LREeC~--~kC~k~k~~YdeCvERV~s~~~tkE~CveEfFDllHCVDhCVAPKLF~kLK  158 (158)
                      .+|||+|||++.||++|+  ++|++++++|++|++||++++++++||+|||||||||||||||||||++||
T Consensus         8 eeeEE~vDp~~~l~e~C~~~~~C~~~~~~y~~C~eRV~s~~~~~e~C~ee~fd~~hCvD~CvapkLf~~LK   78 (78)
T 1pp9_H            8 EEEEELVDPLTTVREQCEQLEKCVKARERLELCDERVSSRSQTEEDCTEELLDFLHARDHCVAHKLFNSLK   78 (78)
T ss_dssp             -----CCCHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHTCSSCSCCSHHHHHHHHHHHHHHHHHHGGGGCC
T ss_pred             hhcccccChHHHHHHHHhcchhhHHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHhhhHHHHHhcC
Confidence            345789999999999999  899999999999999999999999999999999999999999999999998

>3cx5_F Cytochrome B-C1 complex subunit 6; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.28.1.1 PDB: 3cxh_F* 1ezv_H* 1kb9_F* 1p84_F* 2ibz_H* 1kyo_F*

Probab=99.96  E-value=2.5e-31  Score=209.59  Aligned_cols=70  Identities=27%  Similarity=0.513  Sum_probs=61.1

Q ss_pred             CccccccCChHHHHHHHhh--hhCcchHHHHHHHHhhhcCCC--------CCCCCchhhhhhhhhhhhhhhhhHHhhhhC
Q 037428           89 ERADEELVDQKKYFEEACK--PKCVKPLLEYQACVKRIQGDE--------SGHKHCTGQYFDYWSCIDKCVAVKLFQKLK  158 (158)
Q Consensus        89 ~meEEE~vDPk~~LREeC~--~kC~k~k~~YdeCvERV~s~~--------~tkE~CveEfFDllHCVDhCVAPKLF~kLK  158 (158)
                      +.+|||++||++.||++|+  ++|++++++|++|++||++++        .+++||++|||||+||||||||||||++||
T Consensus        67 eeeEEE~vDPk~~LrEeC~~s~~C~~~~~~ydeCveRV~s~~e~~G~~~~~~~EdC~eE~Fdl~hCvD~CvAPKLF~~LK  146 (146)
T 3cx5_F           67 EEEEEEVTDQLEDLREHFKNTEEGKALVHHYEECAERVKIQQQQPGYADLEHKEDCVEEFFHLQHYLDTATAPRLFDKLK  146 (146)
T ss_dssp             ------CCCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHSTTGGGCCSCCCCHHHHHHHHHHHHHHHHHHHGGGCC
T ss_pred             ccccccccChHHHHHHHhcCCchhHHHHHHHHHHHHHHHccccccccccCCCCcccHHHHHHHHhhHhhccCHHHHHhcC
Confidence            3456689999999999999  899999999999999999853        379999999999999999999999999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	158
d1ppjh_	66	f.28.1.1 (H:) Non-heme 11 kDa protein of cytochrom	1e-23
d3cx5f1	74	f.28.1.1 (F:74-147) Non-heme 11 kDa protein of cyt	3e-19

>d1ppjh_ f.28.1.1 (H:) Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]} Length = 66

class: Membrane and cell surface proteins and peptides
fold: Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
superfamily: Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
family: Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
domain: Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 85.9 bits (213), Expect = 1e-23
 Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 2/66 (3%)

Query: 95  LVDQKKYFEEACK--PKCVKPLLEYQACVKRIQGDESGHKHCTGQYFDYWSCIDKCVAVK 152
           LVD      E C+   KCVK     + C +R+       + CT +  D+    D CVA K
Sbjct: 1   LVDPLTTVREQCEQLEKCVKARERLELCDERVSSRSQTEEDCTEELLDFLHARDHCVAHK 60

Query: 153 LFQKLK 158
           LF  LK
Sbjct: 61  LFNSLK 66

>d3cx5f1 f.28.1.1 (F:74-147) Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 74

class: Membrane and cell surface proteins and peptides
fold: Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
superfamily: Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
family: Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
domain: Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 74.5 bits (183), Expect = 3e-19
 Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 10/74 (13%)

Query: 95  LVDQKKYFEEACK--PKCVKPLLEYQACVKRIQ--------GDESGHKHCTGQYFDYWSC 144
           + DQ +   E  K   +    +  Y+ C +R++         D    + C  ++F     
Sbjct: 1   VTDQLEDLREHFKNTEEGKALVHHYEECAERVKIQQQQPGYADLEHKEDCVEEFFHLQHY 60

Query: 145 IDKCVAVKLFQKLK 158
           +D   A +LF KLK
Sbjct: 61  LDTATAPRLFDKLK 74

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	158
d1ppjh_	66	Non-heme 11 kDa protein of cytochrome bc1 complex	99.97
d3cx5f1	74	Non-heme 11 kDa protein of cytochrome bc1 complex	99.96

>d1ppjh_ f.28.1.1 (H:) Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}

class: Membrane and cell surface proteins and peptides
fold: Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
superfamily: Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
family: Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
domain: Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=2.2e-32  Score=189.35  Aligned_cols=64  Identities=36%  Similarity=0.664  Sum_probs=62.5

Q ss_pred             cCChHHHHHHHhh--hhCcchHHHHHHHHhhhcCCCCCCCCchhhhhhhhhhhhhhhhhHHhhhhC
Q 037428           95 LVDQKKYFEEACK--PKCVKPLLEYQACVKRIQGDESGHKHCTGQYFDYWSCIDKCVAVKLFQKLK  158 (158)
Q Consensus        95 ~vDPk~~LREeC~--~kC~k~k~~YdeCvERV~s~~~tkE~CveEfFDllHCVDhCVAPKLF~kLK  158 (158)
                      +|||++.||++|+  ++|++++++|++|++||+++++++|||+||||||+||+|||||||||++||
T Consensus         1 lVDp~~~lre~C~~~~~C~~~~~~~~eC~eRV~~~~~~~E~C~eE~fd~~hc~D~CvapkLF~~LK   66 (66)
T d1ppjh_           1 LVDPLTTVREQCEQLEKCVKARERLELCDERVSSRSQTEEDCTEELLDFLHARDHCVAHKLFNSLK   66 (66)
T ss_dssp             CCCHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHTCSSCSCCSHHHHHHHHHHHHHHHHHHGGGGCC
T ss_pred             CCCcHHHHHHHHhccHhhHHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHhcCHHHHHhcC
Confidence            5899999999997  899999999999999999999999999999999999999999999999998

>d3cx5f1 f.28.1.1 (F:74-147) Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Membrane and cell surface proteins and peptides
fold: Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
superfamily: Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
family: Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
domain: Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=7.6e-31  Score=185.23  Aligned_cols=64  Identities=25%  Similarity=0.488  Sum_probs=60.0

Q ss_pred             cCChHHHHHHHhh--hhCcchHHHHHHHHhhhcCCC--------CCCCCchhhhhhhhhhhhhhhhhHHhhhhC
Q 037428           95 LVDQKKYFEEACK--PKCVKPLLEYQACVKRIQGDE--------SGHKHCTGQYFDYWSCIDKCVAVKLFQKLK  158 (158)
Q Consensus        95 ~vDPk~~LREeC~--~kC~k~k~~YdeCvERV~s~~--------~tkE~CveEfFDllHCVDhCVAPKLF~kLK  158 (158)
                      +|||+++||++|+  ++|++++++|++|++||++++        +++|+|+||||||+||+|||||||||++||
T Consensus         1 lVDpl~~lre~C~~~~~C~~~~~~y~eC~eRV~s~~e~~~~~~~~~~E~C~eE~fdl~hcvD~CvApkLF~~LK   74 (74)
T d3cx5f1           1 VTDQLEDLREHFKNTEEGKALVHHYEECAERVKIQQQQPGYADLEHKEDCVEEFFHLQHYLDTATAPRLFDKLK   74 (74)
T ss_dssp             CCCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHSTTGGGCCSCCCCHHHHHHHHHHHHHHHHHHHGGGCC
T ss_pred             CCChHHHHHHHHhccHhhHHHHHHHHHHHHHHHhcccCCCcCCCccccchHHHHHHHHHHHHHhccHHHHHhcC
Confidence            5899999999998  799999999999999999854        357999999999999999999999999998