Citrus Sinensis ID: 037430

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------20
MGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPK
ccccccccccccccccEEccccccccccccccccccccccccEEEEEEEEccccccccEEEEEcccccccccEEEEEEccccccccEEEEcccccccccccccccccccccEEEEEEEEcccccEEEEccccEEEEEEEcccccEEEEEcccccEEEEcccccEEEEEEEccccccccHHHHHHHccccccccccccc
cccEEEEccccccccEEEEEEEcccccEEEEEEEcEccccccEEEEEEEEcccccccEEEEEEcccccccccEEEEccEcccEcccEEEEccccccccccEEEccccccccEEEcEcccccccccEcccccccEEEEEcccccccEEEEcccccEEEEccccEEEEccEccccHHHcccccHHHHHHHHccccccccc
MGRVIRAQrkgagsvfkshthhrkgpaqfrsldfgerngylKGVVAEIihdpgrgaplarvtfrhpfrYMKQKELFIAAEGMYTGQFVYCGKKatlmvgnvlpvrsipegavvcnvehhvgdrgvlarasgDYAVIishnpdndttrvklpsgakkiipsgcRAMIgqvagggrtekpllkagnayhKFRVKRNCWPK
mgrviraqrkgagsvfkshthhrkgpaqfrsldfgERNGYLKGVVAEIihdpgrgaPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIishnpdndttrvklpsgakkiipsgcRAMIGQvagggrtekpllkagnayhkfrvkrncwpk
MGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPK
******************************SLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHN*************AKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW**
*GRV*R***********SHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWP*
*************************PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPK
**RVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKR*****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query198 2.2.26 [Sep-21-2011]
Q42064258 60S ribosomal protein L8- yes no 1.0 0.767 0.898 1e-106
P46286258 60S ribosomal protein L8- yes no 1.0 0.767 0.909 1e-106
P29766260 60S ribosomal protein L8 N/A no 1.0 0.761 0.909 1e-106
P25998260 60S ribosomal protein L8 N/A no 1.0 0.761 0.883 1e-103
Q4PSL7260 60S ribosomal protein L8- no no 0.994 0.757 0.863 1e-101
Q9U9L2261 60S ribosomal protein L8 yes no 1.0 0.758 0.707 6e-81
Q9V3G1256 60S ribosomal protein L8 yes no 1.0 0.773 0.696 1e-80
P41116257 60S ribosomal protein L8 N/A no 1.0 0.770 0.691 1e-80
Q95V39257 60S ribosomal protein L8 N/A no 0.994 0.766 0.710 2e-80
Q6RYS3257 60S ribosomal protein L8 N/A no 0.994 0.766 0.710 2e-80
>sp|Q42064|RL83_ARATH 60S ribosomal protein L8-3 OS=Arabidopsis thaliana GN=RPL8C PE=1 SV=2 Back     alignment and function desciption
 Score =  385 bits (989), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 178/198 (89%), Positives = 194/198 (97%)

Query: 1   MGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLAR 60
           MGRVIRAQRKGAGSVFKSHTHHRKGPA+FRSLDFGERNGYLKGVV EIIHDPGRGAPLAR
Sbjct: 1   MGRVIRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLAR 60

Query: 61  VTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHV 120
           V FRHPFR+ KQKELF+AAEGMYTGQF+YCGKKATL+VGNVLP+RSIPEGAV+CNVEHHV
Sbjct: 61  VAFRHPFRFKKQKELFVAAEGMYTGQFLYCGKKATLVVGNVLPLRSIPEGAVICNVEHHV 120

Query: 121 GDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLL 180
           GDRGV ARASGDYA++I+HNPDNDT+R+KLPSG+KKI+PSGCRAMIGQVAGGGRTEKP+L
Sbjct: 121 GDRGVFARASGDYAIVIAHNPDNDTSRIKLPSGSKKIVPSGCRAMIGQVAGGGRTEKPML 180

Query: 181 KAGNAYHKFRVKRNCWPK 198
           KAGNAYHK+RVKRNCWPK
Sbjct: 181 KAGNAYHKYRVKRNCWPK 198

Arabidopsis thaliana (taxid: 3702)
>sp|P46286|RL81_ARATH 60S ribosomal protein L8-1 OS=Arabidopsis thaliana GN=RPL8A PE=1 SV=2 Back     alignment and function description
>sp|P29766|RL8_SOLLC 60S ribosomal protein L8 OS=Solanum lycopersicum GN=RPL8 PE=2 SV=1 Back     alignment and function description
>sp|P25998|RL8_TOBAC 60S ribosomal protein L8 OS=Nicotiana tabacum GN=RPL8 PE=2 SV=1 Back     alignment and function description
>sp|Q4PSL7|RL82_ARATH 60S ribosomal protein L8-2 OS=Arabidopsis thaliana GN=RPL8B PE=2 SV=3 Back     alignment and function description
>sp|Q9U9L2|RL8_ANOGA 60S ribosomal protein L8 OS=Anopheles gambiae GN=RpL8 PE=2 SV=2 Back     alignment and function description
>sp|Q9V3G1|RL8_DROME 60S ribosomal protein L8 OS=Drosophila melanogaster GN=RpL8 PE=2 SV=1 Back     alignment and function description
>sp|P41116|RL8_XENLA 60S ribosomal protein L8 OS=Xenopus laevis GN=rpl8 PE=2 SV=3 Back     alignment and function description
>sp|Q95V39|RL8_SPOFR 60S ribosomal protein L8 OS=Spodoptera frugiperda GN=RpL8 PE=2 SV=1 Back     alignment and function description
>sp|Q6RYS3|RL8_MAMBR 60S ribosomal protein L8 OS=Mamestra brassicae GN=RpL8 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query198
224134122260 predicted protein [Populus trichocarpa] 1.0 0.761 0.919 1e-106
224094953260 predicted protein [Populus trichocarpa] 1.0 0.761 0.924 1e-106
297832440258 predicted protein [Arabidopsis lyrata su 1.0 0.767 0.914 1e-105
297802318258 60S ribosomal protein L8 [Arabidopsis ly 1.0 0.767 0.904 1e-105
449468522260 PREDICTED: 60S ribosomal protein L8-like 1.0 0.761 0.924 1e-105
449434174260 PREDICTED: 60S ribosomal protein L8-like 1.0 0.761 0.919 1e-105
15234298258 60S ribosomal protein L8-3 [Arabidopsis 1.0 0.767 0.898 1e-105
225431169260 PREDICTED: 60S ribosomal protein L8 [Vit 1.0 0.761 0.914 1e-105
15227954258 60S ribosomal protein L8-1 [Arabidopsis 1.0 0.767 0.909 1e-105
350539037260 60S ribosomal protein L8 [Solanum lycope 1.0 0.761 0.909 1e-104
>gi|224134122|ref|XP_002327761.1| predicted protein [Populus trichocarpa] gi|118484622|gb|ABK94183.1| unknown [Populus trichocarpa] gi|222836846|gb|EEE75239.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 182/198 (91%), Positives = 193/198 (97%)

Query: 1   MGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLAR 60
           MGRVIRAQRKGAGSVFKSHTHHRKGPA+FRSLDFGERNGYLKGVV EIIHDPGRGAPLAR
Sbjct: 1   MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTEIIHDPGRGAPLAR 60

Query: 61  VTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHV 120
           V+FRHPFRY KQKELF+AAEGMYTGQFVYCGKKA LMVGNVLP+RS+PEGAVVCNVEHHV
Sbjct: 61  VSFRHPFRYKKQKELFVAAEGMYTGQFVYCGKKANLMVGNVLPLRSVPEGAVVCNVEHHV 120

Query: 121 GDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLL 180
           GDRGV ARASGDYA++ISHNPDNDTTR+KLPSG+KKI+PSGCR MIGQVAGGGRTEKP+L
Sbjct: 121 GDRGVFARASGDYAIVISHNPDNDTTRIKLPSGSKKIVPSGCRGMIGQVAGGGRTEKPML 180

Query: 181 KAGNAYHKFRVKRNCWPK 198
           KAGNAYHKFRVKRNCWPK
Sbjct: 181 KAGNAYHKFRVKRNCWPK 198

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224094953|ref|XP_002310303.1| predicted protein [Populus trichocarpa] gi|118484023|gb|ABK93898.1| unknown [Populus trichocarpa] gi|118486019|gb|ABK94853.1| unknown [Populus trichocarpa] gi|222853206|gb|EEE90753.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297832440|ref|XP_002884102.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297329942|gb|EFH60361.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|297802318|ref|XP_002869043.1| 60S ribosomal protein L8 [Arabidopsis lyrata subsp. lyrata] gi|297314879|gb|EFH45302.1| 60S ribosomal protein L8 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449468522|ref|XP_004151970.1| PREDICTED: 60S ribosomal protein L8-like [Cucumis sativus] gi|449496928|ref|XP_004160265.1| PREDICTED: 60S ribosomal protein L8-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449434174|ref|XP_004134871.1| PREDICTED: 60S ribosomal protein L8-like [Cucumis sativus] gi|449491368|ref|XP_004158874.1| PREDICTED: 60S ribosomal protein L8-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|15234298|ref|NP_195336.1| 60S ribosomal protein L8-3 [Arabidopsis thaliana] gi|75221276|sp|Q42064.2|RL83_ARATH RecName: Full=60S ribosomal protein L8-3 gi|13605569|gb|AAK32778.1|AF361610_1 AT4g36130/F23E13_20 [Arabidopsis thaliana] gi|13605873|gb|AAK32922.1|AF367335_1 AT4g36130/F23E13_20 [Arabidopsis thaliana] gi|2961372|emb|CAA18119.1| putative ribosomal protein L8 [Arabidopsis thaliana] gi|3036817|emb|CAA18507.1| ribosomal protein L2 [Arabidopsis thaliana] gi|7270565|emb|CAB81522.1| putative ribosomal protein L8 [Arabidopsis thaliana] gi|16323280|gb|AAL15395.1| AT4g36130/F23E13_20 [Arabidopsis thaliana] gi|332661223|gb|AEE86623.1| 60S ribosomal protein L8-3 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|225431169|ref|XP_002269409.1| PREDICTED: 60S ribosomal protein L8 [Vitis vinifera] Back     alignment and taxonomy information
>gi|15227954|ref|NP_179393.1| 60S ribosomal protein L8-1 [Arabidopsis thaliana] gi|17380512|sp|P46286.2|RL81_ARATH RecName: Full=60S ribosomal protein L8-1; AltName: Full=60S ribosomal protein L2; AltName: Full=Protein EMBRYO DEFECTIVE 2296 gi|4406816|gb|AAD20124.1| 60S ribosomal protein L2 [Arabidopsis thaliana] gi|22135870|gb|AAM91517.1| 60S ribosomal protein L2 [Arabidopsis thaliana] gi|24899699|gb|AAN65064.1| 60S ribosomal protein L2 [Arabidopsis thaliana] gi|330251622|gb|AEC06716.1| 60S ribosomal protein L8-1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|350539037|ref|NP_001234115.1| 60S ribosomal protein L8 [Solanum lycopersicum] gi|266944|sp|P29766.1|RL8_SOLLC RecName: Full=60S ribosomal protein L8; AltName: Full=L2; AltName: Full=Ribosomal protein TL2 gi|19343|emb|CAA45863.1| ribosomal protein L2 [Solanum lycopersicum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query198
TAIR|locus:2122189258 AT4G36130 [Arabidopsis thalian 1.0 0.767 0.898 2.1e-100
TAIR|locus:2060917258 EMB2296 "embryo defective 2296 1.0 0.767 0.909 2.7e-100
TAIR|locus:2080968260 AT3G51190 [Arabidopsis thalian 0.994 0.757 0.863 8.7e-95
UNIPROTKB|F1NIX0269 RPL8 "Uncharacterized protein" 1.0 0.736 0.681 1e-75
FB|FBgn0261602256 RpL8 "Ribosomal protein L8" [D 1.0 0.773 0.696 1.7e-75
UNIPROTKB|Q3T0S6257 RPL8 "60S ribosomal protein L8 1.0 0.770 0.681 4.5e-75
UNIPROTKB|E2RIA8257 RPL8 "Uncharacterized protein" 1.0 0.770 0.681 4.5e-75
UNIPROTKB|E9PKZ0205 RPL8 "60S ribosomal protein L8 1.0 0.965 0.681 4.5e-75
UNIPROTKB|P62917257 RPL8 "60S ribosomal protein L8 1.0 0.770 0.681 4.5e-75
UNIPROTKB|F2Z567257 RPL8 "Uncharacterized protein" 1.0 0.770 0.681 4.5e-75
TAIR|locus:2122189 AT4G36130 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 996 (355.7 bits), Expect = 2.1e-100, P = 2.1e-100
 Identities = 178/198 (89%), Positives = 194/198 (97%)

Query:     1 MGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLAR 60
             MGRVIRAQRKGAGSVFKSHTHHRKGPA+FRSLDFGERNGYLKGVV EIIHDPGRGAPLAR
Sbjct:     1 MGRVIRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLAR 60

Query:    61 VTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHV 120
             V FRHPFR+ KQKELF+AAEGMYTGQF+YCGKKATL+VGNVLP+RSIPEGAV+CNVEHHV
Sbjct:    61 VAFRHPFRFKKQKELFVAAEGMYTGQFLYCGKKATLVVGNVLPLRSIPEGAVICNVEHHV 120

Query:   121 GDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLL 180
             GDRGV ARASGDYA++I+HNPDNDT+R+KLPSG+KKI+PSGCRAMIGQVAGGGRTEKP+L
Sbjct:   121 GDRGVFARASGDYAIVIAHNPDNDTSRIKLPSGSKKIVPSGCRAMIGQVAGGGRTEKPML 180

Query:   181 KAGNAYHKFRVKRNCWPK 198
             KAGNAYHK+RVKRNCWPK
Sbjct:   181 KAGNAYHKYRVKRNCWPK 198
GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS
GO:0005622 "intracellular" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0005840 "ribosome" evidence=IEA;ISS
GO:0006412 "translation" evidence=IEA;ISS
GO:0005773 "vacuole" evidence=IDA
GO:0022626 "cytosolic ribosome" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA
TAIR|locus:2060917 EMB2296 "embryo defective 2296" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2080968 AT3G51190 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1NIX0 RPL8 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
FB|FBgn0261602 RpL8 "Ribosomal protein L8" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|Q3T0S6 RPL8 "60S ribosomal protein L8" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RIA8 RPL8 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E9PKZ0 RPL8 "60S ribosomal protein L8" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P62917 RPL8 "60S ribosomal protein L8" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F2Z567 RPL8 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P62918RL8_MOUSENo assigned EC number0.68181.00.7704yesno
P62919RL8_RATNo assigned EC number0.68181.00.7704yesno
Q6P0V6RL8_DANRENo assigned EC number0.67671.00.7704yesno
Q95V39RL8_SPOFRNo assigned EC number0.71060.99490.7665N/Ano
P62917RL8_HUMANNo assigned EC number0.68181.00.7704yesno
P0CX46RL2B_YEASTNo assigned EC number0.64641.00.7795yesno
P0CX45RL2A_YEASTNo assigned EC number0.64641.00.7795yesno
Q6PBF0RL8_XENTRNo assigned EC number0.68681.00.7704yesno
P21479RL2_METVANo assigned EC number0.43710.96460.8059yesno
P46286RL81_ARATHNo assigned EC number0.90901.00.7674yesno
Q9U9L2RL8_ANOGANo assigned EC number0.70701.00.7586yesno
Q75AP7RL2_ASHGONo assigned EC number0.62621.00.7795yesno
P13023RL8_DICDINo assigned EC number0.66331.00.7764yesno
P29766RL8_SOLLCNo assigned EC number0.90901.00.7615N/Ano
Q5R7Y8RL8_PONABNo assigned EC number0.68181.00.7704yesno
Q3T0S6RL8_BOVINNo assigned EC number0.68181.00.7704yesno
Q42064RL83_ARATHNo assigned EC number0.89891.00.7674yesno
Q6RYS3RL8_MAMBRNo assigned EC number0.71060.99490.7665N/Ano
Q9V3G1RL8_DROMENo assigned EC number0.69691.00.7734yesno
P08093RL2_SCHPONo assigned EC number0.65150.99490.7786yesno
Q9XVF7RL8_CAEELNo assigned EC number0.62621.00.7615yesno
P25998RL8_TOBACNo assigned EC number0.88381.00.7615N/Ano
Q6FPN7RL2_CANGANo assigned EC number0.65651.00.7795yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_Genewise1_v1.C_LG_VII3915
SubName- Full=Putative uncharacterized protein; (260 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.1845.1.1
60S ribosomal protein L4/L1 (RPL4D) (408 aa)
•  •• • 0.781
estExt_Genewise1_v1.C_280409
SubName- Full=Putative uncharacterized protein; (408 aa)
•  •• • 0.780
gw1.16155.2.1
Predicted protein (206 aa)
•     • 0.763
estExt_Genewise1_v1.C_LG_XVI2622
60S ribosomal protein L4/L1 (RPL4D) (407 aa)
•  •• • 0.745
fgenesh4_pg.C_LG_VI001257
SubName- Full=Putative uncharacterized protein; (180 aa)
• ••• • 0.698
grail3.0071003601
SubName- Full=Putative uncharacterized protein; (181 aa)
• ••• • 0.697
estExt_fgenesh4_pg.C_LG_VI1248
SubName- Full=Putative uncharacterized protein; (181 aa)
• ••• • 0.697
estExt_Genewise1_v1.C_LG_XI3222
SubName- Full=Putative uncharacterized protein; (181 aa)
• ••• • 0.697
estExt_fgenesh4_pm.C_LG_V0429
SubName- Full=Putative uncharacterized protein; (389 aa)
•  •••• 0.681
gw1.XVI.3868.1
SubName- Full=Putative uncharacterized protein; (262 aa)
• ••• • 0.678

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query198
PTZ00180260 PTZ00180, PTZ00180, 60S ribosomal protein L8; Prov 1e-120
PRK09612238 PRK09612, rpl2p, 50S ribosomal protein L2P; Valida 8e-69
COG0090275 COG0090, RplB, Ribosomal protein L2 [Translation, 3e-60
pfam03947130 pfam03947, Ribosomal_L2_C, Ribosomal Proteins L2, 1e-28
TIGR01171273 TIGR01171, rplB_bact, ribosomal protein L2, bacter 1e-20
CHL00052273 CHL00052, rpl2, ribosomal protein L2 2e-19
PRK09374276 PRK09374, rplB, 50S ribosomal protein L2; Validate 2e-17
PTZ00031317 PTZ00031, PTZ00031, ribosomal protein L2; Provisio 2e-16
pfam0018177 pfam00181, Ribosomal_L2, Ribosomal Proteins L2, RN 3e-15
>gnl|CDD|173464 PTZ00180, PTZ00180, 60S ribosomal protein L8; Provisional Back     alignment and domain information 
 Score =  340 bits (874), Expect = e-120
 Identities = 135/198 (68%), Positives = 158/198 (79%)

Query: 1   MGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLAR 60
           MGRVIRAQRKG GSVFK+H H R GPA+ R LD+ ER+GY++GVV +I HDPGRGAPLAR
Sbjct: 1   MGRVIRAQRKGNGSVFKAHGHKRLGPAKLRILDYAERHGYIRGVVKDIEHDPGRGAPLAR 60

Query: 61  VTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHV 120
           V FR P++Y + KEL +A EGMYTGQ+VYCG KA L +GNVLP+  IPEG +VCNVE   
Sbjct: 61  VEFRDPYKYKRVKELMVAPEGMYTGQYVYCGAKAPLAIGNVLPLGQIPEGTIVCNVEEKP 120

Query: 121 GDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLL 180
           GDRG LARASG YA II H+ D   TR++LPSG KK + S  RAMIG VAGGGR +KP+L
Sbjct: 121 GDRGTLARASGCYATIIGHSDDGGKTRIRLPSGQKKTVSSLSRAMIGIVAGGGRIDKPVL 180

Query: 181 KAGNAYHKFRVKRNCWPK 198
           KAGNA+HK+R KRNCWPK
Sbjct: 181 KAGNAFHKYRGKRNCWPK 198

Length = 260
>gnl|CDD|236589 PRK09612, rpl2p, 50S ribosomal protein L2P; Validated Back     alignment and domain information
>gnl|CDD|223168 COG0090, RplB, Ribosomal protein L2 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|202823 pfam03947, Ribosomal_L2_C, Ribosomal Proteins L2, C-terminal domain Back     alignment and domain information
>gnl|CDD|162234 TIGR01171, rplB_bact, ribosomal protein L2, bacterial/organellar Back     alignment and domain information
>gnl|CDD|176993 CHL00052, rpl2, ribosomal protein L2 Back     alignment and domain information
>gnl|CDD|236488 PRK09374, rplB, 50S ribosomal protein L2; Validated Back     alignment and domain information
>gnl|CDD|173329 PTZ00031, PTZ00031, ribosomal protein L2; Provisional Back     alignment and domain information
>gnl|CDD|109247 pfam00181, Ribosomal_L2, Ribosomal Proteins L2, RNA binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 198
PTZ00180260 60S ribosomal protein L8; Provisional 100.0
PRK09612238 rpl2p 50S ribosomal protein L2P; Validated 100.0
COG0090275 RplB Ribosomal protein L2 [Translation, ribosomal 100.0
PRK09374276 rplB 50S ribosomal protein L2; Validated 100.0
CHL00052273 rpl2 ribosomal protein L2 100.0
PTZ00031317 ribosomal protein L2; Provisional 100.0
TIGR01171273 rplB_bact ribosomal protein L2, bacterial/organell 100.0
KOG0438312 consensus Mitochondrial/chloroplast ribosomal prot 100.0
KOG2309248 consensus 60s ribosomal protein L2/L8 [Translation 100.0
PF03947130 Ribosomal_L2_C: Ribosomal Proteins L2, C-terminal 100.0
PF0018177 Ribosomal_L2: Ribosomal Proteins L2, RNA binding d 99.94
KOG0438 312 consensus Mitochondrial/chloroplast ribosomal prot 80.92
>PTZ00180 60S ribosomal protein L8; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.6e-74  Score=498.12  Aligned_cols=198  Identities=68%  Similarity=1.190  Sum_probs=190.9

Q ss_pred             CCcccceeecCCCCcceeeccccccCceeEeeecccccCCceeEEEEEEeCCCCccceEEEEecCCCccCceEEEEEecc
Q 037430            1 MGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAE   80 (198)
Q Consensus         1 mgk~~~~qr~Gr~~~~R~~~~~r~g~~~yr~Idf~r~~~~~~~~V~~I~yDP~Rsa~Ialv~~~~g~~~~~~~~yila~e   80 (198)
                      |||+|++||||||.+||+++|++.+...||.|||+|+..++.++|++|||||||||+||||.|.|++.++..++||||||
T Consensus         1 MGk~~~~qrrGrgs~~r~~~~~~~~~~~yR~iDf~r~~~~~~g~V~~IeyDPnRsA~IAlv~~~d~~~~~g~~~YIlAp~   80 (260)
T PTZ00180          1 MGRVIRAQRKGNGSVFKAHGHKRLGPAKLRILDYAERHGYIRGVVKDIEHDPGRGAPLARVEFRDPYKYKRVKELMVAPE   80 (260)
T ss_pred             CCcccchhccCCCCcccCccccccCCccccccccccccCCcCEEEEEEEECCCCCceEEEEEecCCccccCceEEEEeeC
Confidence            99999999999999999999999999999999999987778999999999999999999999999865545679999999


Q ss_pred             CCCcccEEEEcCCcccccCCcccCcCCCCCCcceeeeeecCCCceEEecCCCeEEEEeecCCCCEEEEEcCCCcEEEEcC
Q 037430           81 GMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPS  160 (198)
Q Consensus        81 g~~~Gd~I~~g~~~~~~~Gn~lpL~~IP~Gt~I~nIE~~pg~Ggk~~RsAGt~a~Ii~k~~~~~~~~vkLPSGe~r~i~~  160 (198)
                      ||++||+|+++.++++++||+|||.+||+||.|||||+.||+||||||||||||+|++|++++++++|||||||+++|++
T Consensus        81 gl~vGd~I~~g~~a~i~~GN~lpL~~IP~GT~IhNIE~~pG~GgklaRSAGt~A~ii~k~k~~~~~~vkLPSGe~r~v~~  160 (260)
T PTZ00180         81 GMYTGQYVYCGAKAPLAIGNVLPLGQIPEGTIVCNVEEKPGDRGTLARASGCYATIIGHSDDGGKTRIRLPSGQKKTVSS  160 (260)
T ss_pred             CCCCCCEEEeCCCCCCCCcCccCHhhCCCCCeEEEEeccCCCCceEEEecCCeEEEEEEcccCCEEEEECCCCCeEeECC
Confidence            99999999999999999999999999999999999999999999999999999999998656899999999999999999


Q ss_pred             CCceeEEEeeCCCcCceeeeccchhhhccccccCCCCC
Q 037430          161 GCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPK  198 (198)
Q Consensus       161 ~c~AtIG~vsn~~~~~~~~gKAG~~r~~~k~~~~~~p~  198 (198)
                      +|+||||+|||.+|.+++|+|||++||++++.+++||+
T Consensus       161 ~c~ATIG~Vsn~~~~~k~l~KAG~~~~~~~a~~~rwP~  198 (260)
T PTZ00180        161 LSRAMIGIVAGGGRIDKPVLKAGNAFHKYRGKRNCWPK  198 (260)
T ss_pred             CCeEEEEEccCCcchheeeccccchhhhhhCcCCCCCc
Confidence            99999999999999999999999999999999999995

>PRK09612 rpl2p 50S ribosomal protein L2P; Validated Back     alignment and domain information
>COG0090 RplB Ribosomal protein L2 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK09374 rplB 50S ribosomal protein L2; Validated Back     alignment and domain information
>CHL00052 rpl2 ribosomal protein L2 Back     alignment and domain information
>PTZ00031 ribosomal protein L2; Provisional Back     alignment and domain information
>TIGR01171 rplB_bact ribosomal protein L2, bacterial/organellar Back     alignment and domain information
>KOG0438 consensus Mitochondrial/chloroplast ribosomal protein L2 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2309 consensus 60s ribosomal protein L2/L8 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF03947 Ribosomal_L2_C: Ribosomal Proteins L2, C-terminal domain; InterPro: IPR022669 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>PF00181 Ribosomal_L2: Ribosomal Proteins L2, RNA binding domain; InterPro: IPR022666 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>KOG0438 consensus Mitochondrial/chloroplast ribosomal protein L2 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query198
3izr_B261 Localization Of The Large Subunit Ribosomal Protein 1e-105
2zkr_a257 Structure Of A Mammalian Ribosomal 60s Subunit With 6e-75
3zf7_e260 High-resolution Cryo-electron Microscopy Structure 1e-72
4a17_A264 T.Thermophila 60s Ribosomal Subunit In Complex With 2e-72
3izs_B254 Localization Of The Large Subunit Ribosomal Protein 6e-72
1s1i_B253 Structure Of The Ribosomal 80s-Eef2-Sordarin Comple 3e-71
3jyw_B243 Structure Of The 60s Proteins For Eukaryotic Riboso 4e-71
3j21_B239 Promiscuous Behavior Of Proteins In Archaeal Riboso 9e-42
1s72_A240 Refined Crystal Structure Of The Haloarcula Marismo 1e-33
3g4s_A237 Co-Crystal Structure Of Tiamulin Bound To The Large 1e-33
2otl_A239 Girodazole Bound To The Large Subunit Of Haloarcula 2e-33
3ow2_A237 Crystal Structure Of Enhanced Macrolide Bound To 50 4e-33
1ffk_A239 Crystal Structure Of The Large Ribosomal Subunit Fr 5e-33
1ml5_d178 Crystal Structure Of The Ribosome At 5.5 A Resoluti 8e-24
2b66_D173 50s Ribosomal Subunit From A Crystal Structure Of R 6e-22
2aw4_C273 Crystal Structure Of The Bacterial Ribosome From Es 1e-15
1p85_A272 Real Space Refined Coordinates Of The 50s Subunit F 1e-15
3e1b_N270 Structure Of The 50s Subunit Of E. Coli Ribosome In 1e-15
3fik_C271 Ternary Complex-Bound E.Coli 70s Ribosome. This Ent 1e-15
2j28_C267 Model Of E. Coli Srp Bound To 70s Rncs Length = 267 1e-15
2gya_A227 Structure Of The 50s Subunit Of A Pre-Translocation 1e-15
3bbo_E269 Homology Model For The Spinach Chloroplast 50s Subu 4e-14
1rl2_A137 Ribosomal Protein L2 Rna-Binding Domain From Bacill 3e-13
487d_I135 Seven Ribosomal Proteins Fitted To A Cryo-Electron 3e-13
1nwx_A274 Complex Of The Large Ribosomal Subunit From Deinoco 3e-12
1pnu_A270 Crystal Structure Of A Streptomycin Dependent Ribos 3e-12
1nkw_A275 Crystal Structure Of The Large Ribosomal Subunit Fr 4e-12
3mrz_C275 Recognition Of The Amber Stop Codon By Release Fact 4e-12
2j01_D276 Structure Of The Thermus Thermophilus 70s Ribosome 4e-12
3fin_D272 T. Thermophilus 70s Ribosome In Complex With Mrna, 4e-12
3pyo_C271 Crystal Structure Of A Complex Containing Domain 3 4e-12
2ftc_B136 Structural Model For The Large Subunit Of The Mamma 3e-04
>pdb|3IZR|B Chain B, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 261 Back     alignment and structure 
Iteration: 1

 Score =  378 bits (970), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 175/198 (88%), Positives = 191/198 (96%)
Query: 1   MGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLAR 60
           MGRVIRAQRKGAGSVFKSHTHHRKGPA+FRSLDFGERNGYLKGVV +IIHDPGRGAPLA+
Sbjct: 1   MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDIIHDPGRGAPLAK 60
Query: 61  VTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHV 120
           VTFRHPFRY  QKELF+AAEGMYTGQFVYCG++ATL +GNVLP+RS+PEGAVVCNVEHHV
Sbjct: 61  VTFRHPFRYKHQKELFVAAEGMYTGQFVYCGRRATLSIGNVLPIRSVPEGAVVCNVEHHV 120
Query: 121 GDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLL 180
           GDRGV ARASGDYA++ISHNPDN T+R+KLPSGAKKI+PS CRAMIGQVAGGGRTEKP+L
Sbjct: 121 GDRGVFARASGDYAIVISHNPDNGTSRIKLPSGAKKIVPSSCRAMIGQVAGGGRTEKPML 180
Query: 181 KAGNAYHKFRVKRNCWPK 198
           KAGNAYHK+RVKRNCWPK
Sbjct: 181 KAGNAYHKYRVKRNCWPK 198
>pdb|2ZKR|AA Chain a, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 257 Back     alignment and structure
>pdb|3ZF7|EE Chain e, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 260 Back     alignment and structure
>pdb|4A17|A Chain A, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 5s Rrna, 5.8s Rrna And Proteins Of Molecule 2. Length = 264 Back     alignment and structure
>pdb|3IZS|B Chain B, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 254 Back     alignment and structure
>pdb|1S1I|B Chain B, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h Length = 253 Back     alignment and structure
>pdb|3JYW|B Chain B, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 243 Back     alignment and structure
>pdb|3J21|B Chain B, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 239 Back     alignment and structure
>pdb|1S72|A Chain A, Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution Length = 240 Back     alignment and structure
>pdb|3G4S|A Chain A, Co-Crystal Structure Of Tiamulin Bound To The Large Ribosomal Subunit Length = 237 Back     alignment and structure
>pdb|2OTL|A Chain A, Girodazole Bound To The Large Subunit Of Haloarcula Marismortui Length = 239 Back     alignment and structure
>pdb|3OW2|A Chain A, Crystal Structure Of Enhanced Macrolide Bound To 50s Ribosomal Subunit Length = 237 Back     alignment and structure
>pdb|1FFK|A Chain A, Crystal Structure Of The Large Ribosomal Subunit From Haloarcula Marismortui At 2.4 Angstrom Resolution Length = 239 Back     alignment and structure
>pdb|1ML5|DD Chain d, Structure Of The E. Coli Ribosomal Termination Complex With Release Factor 2 Length = 178 Back     alignment and structure
>pdb|2B66|D Chain D, 50s Ribosomal Subunit From A Crystal Structure Of Release Factor Rf1, Trnas And Mrna Bound To The Ribosome. This File Contains The 50s Subunit From A Crystal Structure Of Release Factor Rf1, Trnas And Mrna Bound To The Ribosome And Is Described In Remark 400 Length = 173 Back     alignment and structure
>pdb|2AW4|C Chain C, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli At 3.5 A Resolution. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. Length = 273 Back     alignment and structure
>pdb|1P85|A Chain A, Real Space Refined Coordinates Of The 50s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 272 Back     alignment and structure
>pdb|3E1B|N Chain N, Structure Of The 50s Subunit Of E. Coli Ribosome In Pre-Accommodation State Length = 270 Back     alignment and structure
>pdb|3FIK|C Chain C, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry Consists Of The 50s Subunit. Length = 271 Back     alignment and structure
>pdb|2J28|C Chain C, Model Of E. Coli Srp Bound To 70s Rncs Length = 267 Back     alignment and structure
>pdb|2GYA|A Chain A, Structure Of The 50s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 227 Back     alignment and structure
>pdb|3BBO|E Chain E, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 269 Back     alignment and structure
>pdb|1RL2|A Chain A, Ribosomal Protein L2 Rna-Binding Domain From Bacillus Stearothermophilus Length = 137 Back     alignment and structure
>pdb|487D|I Chain I, Seven Ribosomal Proteins Fitted To A Cryo-Electron Microscopic Map Of The Large 50s Subunit At 7.5 Angstroms Resolution Length = 135 Back     alignment and structure
>pdb|1NWX|A Chain A, Complex Of The Large Ribosomal Subunit From Deinococcus Radiodurans With Abt-773 Length = 274 Back     alignment and structure
>pdb|1PNU|A Chain A, Crystal Structure Of A Streptomycin Dependent Ribosome From Escherichia Coli, 50s Subunit Of 70s Ribosome. This File, 1pnu, Contains Only Molecules Of The 50s Ribosomal Subunit. The 30s Subunit, Mrna, P-Site Trna, And A-Site Trna Are In The Pdb File 1pns. Length = 270 Back     alignment and structure
>pdb|1NKW|A Chain A, Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans Length = 275 Back     alignment and structure
>pdb|3MRZ|C Chain C, Recognition Of The Amber Stop Codon By Release Factor Rf1. This Entry 3mrz Contains 50s Ribosomal Subunit. The 30s Ribosomal Subunit Can Be Found In Pdb Entry 3ms0. Molecule A In The Same Asymmetric Unit Is Deposited As 3mr8 (50s) And 3ms1 (30s). Length = 275 Back     alignment and structure
>pdb|2J01|D Chain D, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Mrna, Trna And Paromomycin (Part 2 Of 4). This File Contains The 50s Subunit From Molecule I. Length = 276 Back     alignment and structure
>pdb|3FIN|D Chain D, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A 6.4 A Cryo-Em Map. This File Contains The 50s Subunit. Length = 272 Back     alignment and structure
>pdb|3PYO|C Chain C, Crystal Structure Of A Complex Containing Domain 3 From The Psiv Igr Ires Rna Bound To The 70s Ribosome. This File Contains The 50s Subunit Of The First 70s Ribosome. Length = 271 Back     alignment and structure
>pdb|2FTC|B Chain B, Structural Model For The Large Subunit Of The Mammalian Mitochondrial Ribosome Length = 136 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query198
3iz5_B261 60S ribosomal protein L2 (L2P); eukaryotic ribosom 1e-102
3jyw_B243 60S ribosomal protein L2; eukaryotic ribosome, RAC 1e-100
4a17_A264 RPL8; eukaryotic ribosome, ribosome, eukaryotic in 5e-95
1vq8_A240 50S ribosomal protein L2P; ribosome 50S, protein-p 5e-82
1rl2_A137 Protein (ribosomal protein L2); RNA-binding domain 3e-22
1giy_D178 50S ribosomal protein L2; ribosome assembly, prote 4e-22
3r8s_C271 50S ribosomal protein L2; protein biosynthesis, RN 3e-20
2ftc_B136 Mitochondrial ribosomal protein L2; mitochondrial 7e-20
3bbo_E269 Ribosomal protein L2; large ribosomal subunit, spi 9e-20
3v2d_D276 50S ribosomal protein L2; ribosome associated inhi 3e-19
>3jyw_B 60S ribosomal protein L2; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 3izc_B 3izs_B 3o58_B 3o5h_B 3u5e_A 3u5i_A 1s1i_B Length = 243 Back     alignment and structure
>4a17_A RPL8; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_A 4a1c_A 4a1e_A Length = 264 Back     alignment and structure
>1vq8_A 50S ribosomal protein L2P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.3 b.40.4.5 PDB: 1vq4_A* 1vq5_A* 1vq6_A* 1vq7_A* 1s72_A* 1vq9_A* 1vqk_A* 1vql_A* 1vqm_A* 1vqn_A* 1vqo_A* 1vqp_A* 1yhq_A* 1yi2_A* 1yij_A* 1yit_A* 1yj9_A* 1yjn_A* 1yjw_A* 2otj_A* ... Length = 240 Back     alignment and structure
>1rl2_A Protein (ribosomal protein L2); RNA-binding domain, peptidyltransferease center, X-RAY diffraction; 2.30A {Geobacillus stearothermophilus} SCOP: b.34.5.3 b.40.4.5 PDB: 1c04_A 487d_I Length = 137 Back     alignment and structure
>3r8s_C 50S ribosomal protein L2; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_C 2wwq_C 3oat_C* 3oas_C* 3ofd_C 3ofc_C 3ofr_C* 3ofz_C* 3og0_C 3ofq_C 3r8t_C 3i1n_C 1vs8_C 1vs6_C 2aw4_C 2awb_C 2vhm_C 2vhn_C 3bbx_C 3df2_C ... Length = 271 Back     alignment and structure
>2ftc_B Mitochondrial ribosomal protein L2; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_B Length = 136 Back     alignment and structure
>3bbo_E Ribosomal protein L2; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 269 Back     alignment and structure
>3v2d_D 50S ribosomal protein L2; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_B 2hgj_D 2hgq_D 2hgu_D 1vsa_B 2j03_D 2jl6_D 2jl8_D 2v47_D 2v49_D 2wdi_D 2wdj_D 2wdl_D 2wdn_D 2wh2_D 2wh4_D 2wrj_D 2wrl_D 2wro_D 2wrr_D ... Length = 276 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query198
3iz5_B261 60S ribosomal protein L2 (L2P); eukaryotic ribosom 100.0
4a17_A264 RPL8; eukaryotic ribosome, ribosome, eukaryotic in 100.0
3j21_B239 50S ribosomal protein L2P; archaea, archaeal, KINK 100.0
3jyw_B243 60S ribosomal protein L2; eukaryotic ribosome, RAC 100.0
1vq8_A240 50S ribosomal protein L2P; ribosome 50S, protein-p 100.0
1giy_D178 50S ribosomal protein L2; ribosome assembly, prote 100.0
3r8s_C271 50S ribosomal protein L2; protein biosynthesis, RN 100.0
3v2d_D276 50S ribosomal protein L2; ribosome associated inhi 100.0
3bbo_E269 Ribosomal protein L2; large ribosomal subunit, spi 100.0
1rl2_A137 Protein (ribosomal protein L2); RNA-binding domain 100.0
2ftc_B136 Mitochondrial ribosomal protein L2; mitochondrial 100.0
>4a17_A RPL8; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_A 4a1c_A 4a1e_A Back     alignment and structure
>3j21_B 50S ribosomal protein L2P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>3jyw_B 60S ribosomal protein L2; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 3izc_B 3izs_B 3o58_B 3o5h_B 3u5e_A 3u5i_A 4b6a_A 1s1i_B Back     alignment and structure
>1vq8_A 50S ribosomal protein L2P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.3 b.40.4.5 PDB: 1vq4_A* 1vq5_A* 1vq6_A* 1vq7_A* 1s72_A* 1vq9_A* 1vqk_A* 1vql_A* 1vqm_A* 1vqn_A* 1vqo_A* 1vqp_A* 1yhq_A* 1yi2_A* 1yij_A* 1yit_A* 1yj9_A* 1yjn_A* 1yjw_A* 2otj_A* ... Back     alignment and structure
>3r8s_C 50S ribosomal protein L2; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_C 3j19_C 2wwq_C 3oat_C* 3oas_C* 3ofd_C 3ofc_C 3ofr_C* 3ofz_C* 3og0_C 3ofq_C 3r8t_C 3i1n_C 1vs8_C 1vs6_C 2aw4_C 2awb_C 2vhm_C 2vhn_C 3bbx_C ... Back     alignment and structure
>3v2d_D 50S ribosomal protein L2; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_B 2hgj_D 2hgq_D 2hgu_D 1vsa_B 2j03_D 2jl6_D 2jl8_D 2v47_D 2v49_D 2wdi_D 2wdj_D 2wdl_D 2wdn_D 2wh2_D 2wh4_D 2wrj_D 2wrl_D 2wro_D 2wrr_D ... Back     alignment and structure
>3bbo_E Ribosomal protein L2; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Back     alignment and structure
>1rl2_A Protein (ribosomal protein L2); RNA-binding domain, peptidyltransferease center, X-RAY diffraction; 2.30A {Geobacillus stearothermophilus} SCOP: b.34.5.3 b.40.4.5 PDB: 1c04_A 487d_I Back     alignment and structure
>2ftc_B Mitochondrial ribosomal protein L2; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_B Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 198
d1vqoa1147 b.34.5.3 (A:91-237) C-terminal domain of ribosomal 1e-27
d1vqoa290 b.40.4.5 (A:1-90) N-terminal domain of ribosomal p 3e-23
d1rl2a170 b.34.5.3 (A:126-195) C-terminal domain of ribosoma 8e-21
d2j01d1147 b.34.5.3 (D:127-273) C-terminal domain of ribosoma 3e-20
d2qamc1145 b.34.5.3 (C:125-269) C-terminal domain of ribosoma 2e-17
d1rl2a266 b.40.4.5 (A:60-125) N-terminal domain of ribosomal 2e-08
d2qamc264 b.40.4.5 (C:61-124) N-terminal domain of ribosomal 6e-08
d2j01d2125 b.40.4.5 (D:2-126) N-terminal domain of ribosomal 0.001
>d1vqoa1 b.34.5.3 (A:91-237) C-terminal domain of ribosomal protein L2 {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 147 Back     information, alignment and structure

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: C-terminal domain of ribosomal protein L2
domain: C-terminal domain of ribosomal protein L2
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score = 99.5 bits (248), Expect = 1e-27
 Identities = 53/100 (53%), Positives = 64/100 (64%), Gaps = 2/100 (2%)

Query: 99  GNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKII 158
           GN LP+  IPEG  VCNVE   GD G  ARASG  A +++H  D +   VKLPSG  K +
Sbjct: 1   GNTLPLAEIPEGVPVCNVESSPGDGGKFARASGVNAQLLTH--DRNVAVVKLPSGEMKRL 58

Query: 159 PSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPK 198
              CRA IG VAGGGRT+KP +KAGN +HK + +   WP 
Sbjct: 59  DPQCRATIGVVAGGGRTDKPFVKAGNKHHKMKARGTKWPN 98
>d1vqoa2 b.40.4.5 (A:1-90) N-terminal domain of ribosomal protein L2 {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 90 Back     information, alignment and structure
>d1rl2a1 b.34.5.3 (A:126-195) C-terminal domain of ribosomal protein L2 {Bacillus stearothermophilus [TaxId: 1422]} Length = 70 Back     information, alignment and structure
>d2j01d1 b.34.5.3 (D:127-273) C-terminal domain of ribosomal protein L2 {Thermus thermophilus [TaxId: 274]} Length = 147 Back     information, alignment and structure
>d2qamc1 b.34.5.3 (C:125-269) C-terminal domain of ribosomal protein L2 {Escherichia coli [TaxId: 562]} Length = 145 Back     information, alignment and structure
>d1rl2a2 b.40.4.5 (A:60-125) N-terminal domain of ribosomal protein L2 {Bacillus stearothermophilus [TaxId: 1422]} Length = 66 Back     information, alignment and structure
>d2qamc2 b.40.4.5 (C:61-124) N-terminal domain of ribosomal protein L2 {Escherichia coli [TaxId: 562]} Length = 64 Back     information, alignment and structure
>d2j01d2 b.40.4.5 (D:2-126) N-terminal domain of ribosomal protein L2 {Thermus thermophilus [TaxId: 274]} Length = 125 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query198
d1vqoa1147 C-terminal domain of ribosomal protein L2 {Archaeo 100.0
d2qamc1145 C-terminal domain of ribosomal protein L2 {Escheri 100.0
d2j01d1147 C-terminal domain of ribosomal protein L2 {Thermus 100.0
d1rl2a170 C-terminal domain of ribosomal protein L2 {Bacillu 100.0
d2zjra295 N-terminal domain of ribosomal protein L2 {Deinoco 99.97
d2j01d2125 N-terminal domain of ribosomal protein L2 {Thermus 99.96
d1vqoa290 N-terminal domain of ribosomal protein L2 {Archaeo 99.95
d1rl2a266 N-terminal domain of ribosomal protein L2 {Bacillu 99.93
d2qamc264 N-terminal domain of ribosomal protein L2 {Escheri 99.91
d2dy1a1103 Elongation factor G (EF-G), domain II {Thermus the 83.22
d1iz6a169 Eukaryotic initiation translation factor 5a (eIF5a 80.22
>d1vqoa1 b.34.5.3 (A:91-237) C-terminal domain of ribosomal protein L2 {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: C-terminal domain of ribosomal protein L2
domain: C-terminal domain of ribosomal protein L2
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=100.00  E-value=2e-41  Score=268.71  Aligned_cols=98  Identities=54%  Similarity=0.925  Sum_probs=96.7

Q ss_pred             CCcccCcCCCCCCcceeeeeecCCCceEEecCCCeEEEEeecCCCCEEEEEcCCCcEEEEcCCCceeEEEeeCCCcCcee
Q 037430           99 GNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKP  178 (198)
Q Consensus        99 Gn~lpL~~IP~Gt~I~nIE~~pg~Ggk~~RsAGt~a~Ii~k~~~~~~~~vkLPSGe~r~i~~~c~AtIG~vsn~~~~~~~  178 (198)
                      ||+|||.+||+||.|||||+.||+||||||||||||+|++|  |+++|+|||||||+++|+++|+||||+|||.+|.+++
T Consensus         1 Gn~lpL~~IP~Gt~IhNIE~~pg~ggkl~RsAGt~A~ii~k--~~~~~~vkLPSGe~r~i~~~c~ATIG~vsn~~~~~~~   78 (147)
T d1vqoa1           1 GNTLPLAEIPEGVPVCNVESSPGDGGKFARASGVNAQLLTH--DRNVAVVKLPSGEMKRLDPQCRATIGVVAGGGRTDKP   78 (147)
T ss_dssp             TCEEEGGGSCTTCEEESBCSSTTSCCCBSCSTTCCEEEEEC--CSSCEEEECTTSCEEEECTTCEEEESCBSSTTGGGSC
T ss_pred             CCccchhhCCCCCEEEEEEecCCCCceEEEecCceEEEEEe--ccceEEEEecCCceEEEChhcceeeeeccCccchhhh
Confidence            89999999999999999999999999999999999999999  7999999999999999999999999999999999999


Q ss_pred             eeccchhhhccccccCCCCC
Q 037430          179 LLKAGNAYHKFRVKRNCWPK  198 (198)
Q Consensus       179 ~gKAG~~r~~~k~~~~~~p~  198 (198)
                      ++|||+++|++++++.+||+
T Consensus        79 ~~KAG~~~~~~r~~~~r~P~   98 (147)
T d1vqoa1          79 FVKAGNKHHKMKARGTKWPN   98 (147)
T ss_dssp             CCSHHHHHHHHTTSSCCCSC
T ss_pred             hhhhhhhhhhhhhcCCcCCc
Confidence            99999999999999999996
>d2qamc1 b.34.5.3 (C:125-269) C-terminal domain of ribosomal protein L2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2j01d1 b.34.5.3 (D:127-273) C-terminal domain of ribosomal protein L2 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1rl2a1 b.34.5.3 (A:126-195) C-terminal domain of ribosomal protein L2 {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d2zjra2 b.40.4.5 (A:33-127) N-terminal domain of ribosomal protein L2 {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d2j01d2 b.40.4.5 (D:2-126) N-terminal domain of ribosomal protein L2 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1vqoa2 b.40.4.5 (A:1-90) N-terminal domain of ribosomal protein L2 {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d1rl2a2 b.40.4.5 (A:60-125) N-terminal domain of ribosomal protein L2 {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d2qamc2 b.40.4.5 (C:61-124) N-terminal domain of ribosomal protein L2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2dy1a1 b.43.3.1 (A:275-377) Elongation factor G (EF-G), domain II {Thermus thermophilus, EF-G-2 [TaxId: 274]} Back     information, alignment and structure
>d1iz6a1 b.34.5.2 (A:2-70) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure