Citrus Sinensis ID: 037435

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580---
MANSSSGTQPIRKAIAALKDTTKVGLVNLNSENKGLDIAIVKATNHDEVLPKEKHISKILEAVLASRPRADVAYCIQSLAKRLAKTHSWTVALKTLIVIHRALREVDHSFCEELINYSRGRALMFNLSHFRDESSPVAWDHSAWIRNYALYLEERVECFRILRYDVEKSHMGSGRLSIPDLLDQLPSLQQLLFRLLGCKPQGAALYNNLIHYALSIIASESVKLYVSITDGILKLVDKYFEMPRHDAVRTLEIYRKSESQADSLTSLFEICRELDFGRGQKYIKIEKPPASFMTAMEDYVKVAPHIFMLQCTAFSPDFSKTKRCNGDQNVARIEAPKLDDAPGANVSTDRQDSDQPGAAPEPASNDRREAVATQQLIDTEDTQQRTDQSEAAASQQITDLLGLEELTQQVSEMDEKNSLALAIVTSENQPNSENSFTMACQTMSWELALVTAPSSNVAAVAGSKLAGGLDKLTLDSLYDDAIARNAKRNSSNTVGQQVGSNPFEADSLNQDPFSASSGVTPPANAQMSDMIQQQNFMTQQQQQEQKQEQEPQMIGQNATSSSNPFLDQSLPSHPRQDPFSGLT
ccccccccHHHHHHHHHHHHccHHHHHHccccccHHHHHHHHHcccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccHHHccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccHHccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccHHHHHHccccccccccccccccccccccccccccccccccccc
ccccccccHHHHHHHHHcccccEEEEEEEcccHHHHcEEEEEccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccccEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccHEEEEEccccccccccccccccccccccEEEEEEcccccccccHHHcccccccHHHHccccHHHHHHHHHccccccccccccccccccccccccccHHccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccc
mansssgtqPIRKAIAALKDTTKVGLVnlnsenkglDIAIVKatnhdevlpkeKHISKILEAVLASRPRADVAYCIQSLAKRLAKTHSWTVALKTLIVIHRALREVDHSFCEELINYSRGRALMFNlshfrdesspvawdhsAWIRNYALYLEERVECFRILRYDvekshmgsgrlsipdlLDQLPSLQQLLFRLLGCKPQGAALYNNLIHYALSIIASESVKLYVSITDGILKLVDKYFEMPRHDAVRTLEIYRKSESQADSLTSLFEICRELdfgrgqkyikiekppasfmTAMEDYVKVAPHIFmlqctafspdfsktkrcngdqnvarieapklddapganvstdrqdsdqpgaapepasndrrEAVATQQLidtedtqqrtdQSEAAASQQITDLLGLEELTQQVSEMDEKNSLALAIVTsenqpnsensFTMACQTMSWELALvtapssnvaavagsklaggldkltldSLYDDAIarnakrnssntvgqqvgsnpfeadslnqdpfsassgvtppanaqmSDMIQQQNFMTQQQQQEQKqeqepqmigqnatsssnpfldqslpshprqdpfsglt
mansssgtqpIRKAIAALKDTTKVGLVNlnsenkglDIAIVKAtnhdevlpkEKHISKILEAVLASRPRADVAYCIQSLAKRLAKTHSWTVALKTLIVIHRALREVDHSFCEELINYSRGRALMFNLSHFRDESSPVAWDHSAWIRNYALYLEERVECFRILRYDVEKSHMGSGRLSIPDLLDQLPSLQQLLFRLLGCKPQGAALYNNLIHYALSIIASESVKLYVSITDGILKLVDKYFEMPRHDAVRTLEIyrksesqadslTSLFEICRELDFGRGQKYIKIEKPPASFMTAMEDYVKVAPHIFMLQCTAFSPDFSKTKRCNGDQNVarieapklddapganvstdrqdsdqpgaapepasndrrEAVATQQLIDTEDTQQRTDQSEAAASQQITDLLGLEELTQQVSEMDEKNSLALAIVTSENQPNSENSFTMACQTMSWELALVTAPSSNVAAVAGSKLAGGLDKLTLDSLYDDAIArnakrnssntvgQQVGSNPFEADSLNQDPFSASSGVTPPANAQMSDMIQQQNFMTQQQQQEQKQEQEPQMIGQNATSSSNPFLdqslpshprqdpfsglt
MANSSSGTQPIRKAIAALKDTTKVGLVNLNSENKGLDIAIVKATNHDEVLPKEKHISKILEAVLASRPRADVAYCIQSLAKRLAKTHSWTVALKTLIVIHRALREVDHSFCEELINYSRGRALMFNLSHFRDESSPVAWDHSAWIRNYALYLEERVECFRILRYDVEKSHMGSGRlsipdlldqlpslqqllfrllGCKPQGAALYNNLIHYALSIIASESVKLYVSITDGILKLVDKYFEMPRHDAVRTLEIYRKSESQADSLTSLFEICRELDFGRGQKYIKIEKPPASFMTAMEDYVKVAPHIFMLQCTAFSPDFSKTKRCNGDQNVARIEAPKLDDAPGANVSTDRQDSDQPGAAPEPASNDRREAVATQQLIDTEDTQQRTDQSEAAASQQITDLLGLEELTQQVSEMDEKNSLALAIVTSENQPNSENSFTMACQTMSWELALVTAPSSNVAAVAGSKLAGGLDKLTLDSLYDDAIARNAKRNSSNTVGQQVGSNPFEADSLNQDPFSASSGVTPPANAQMSDMIqqqnfmtqqqqqeqkqeqepqMIGQNATSSSNPFLDQSLPSHPRQDPFSGLT
***************AALKDTTKVGLVNLNSENKGLDIAIVKATNHDEVLPKEKHISKILEAVLASRPRADVAYCIQSLAKRLAKTHSWTVALKTLIVIHRALREVDHSFCEELINYSRGRALMFNLSHFRDESSPVAWDHSAWIRNYALYLEERVECFRILRYDVEKSHMGSGRLSIPDLLDQLPSLQQLLFRLLGCKPQGAALYNNLIHYALSIIASESVKLYVSITDGILKLVDKYFEMPRHDAVRTLEIYRKS***ADSLTSLFEICRELDFGRGQKYIKIEKPPASFMTAMEDYVKVAPHIFMLQCTAFSPDF*********************************************************************************************************************FTMACQTMSWELALVTAPSSNVAAVAGSKLAGGLDKLTLDSLYDDAI*****************************************************************************************************
*************AIAALKDTTKVGLVNLNSENKGLDIAIVKATNHDEVLPKEKHISKILEAVLASRPRADVAYCIQSLAKRLAKTHSWTVALKTLIVIHRALREVDHSFCEELINYSRGRALMFNLSHFRDESSPVAWDHSAWIRNYALYLEERVECFRILRYDVEKSH******SIPDLLDQLPSLQQLLFRLLGCKPQGAALYNNLIHYALSIIASESVKLYVSITDGILKLVDKYFEMPRHDAVRTLEIYRKSESQADSLTSLFEICRELDFGRGQKYIKIEKPPASFMT*******************************************************************************************************************************************************************************************************************************GV****************************************************************
**********IRKAIAALKDTTKVGLVNLNSENKGLDIAIVKATNHDEVLPKEKHISKILEAVLASRPRADVAYCIQSLAKRLAKTHSWTVALKTLIVIHRALREVDHSFCEELINYSRGRALMFNLSHFRDESSPVAWDHSAWIRNYALYLEERVECFRILRYDVEKSHMGSGRLSIPDLLDQLPSLQQLLFRLLGCKPQGAALYNNLIHYALSIIASESVKLYVSITDGILKLVDKYFEMPRHDAVRTLEIYRKSESQADSLTSLFEICRELDFGRGQKYIKIEKPPASFMTAMEDYVKVAPHIFMLQCTAFSPDFSKTKRCNGDQNVARIEAPKLDDA*****************************VATQQLIDT***************QQITDLLGLEELTQQVSEMDEKNSLALAIVTSENQPNSENSFTMACQTMSWELALVTAPSSNVAAVAGSKLAGGLDKLTLDSLYDDAIARNAK**********VGSNPFEADSLNQDPFSASSGVTPPANAQMSDMIQQQ***********************ATSSSNPFLDQS**************
*********PIRKAIAALKDTTKVGLVNLNSENKGLDIAIVKATNHDEVLPKEKHISKILEAVLASRPRADVAYCIQSLAKRLAKTHSWTVALKTLIVIHRALREVDHSFCEELINYSRGRALMFNLSHFRDESSPVAWDHSAWIRNYALYLEERVECFRILRYDVEKSHMGSGRLSIPDLLDQLPSLQQLLFRLLGCKPQGAALYNNLIHYALSIIASESVKLYVSITDGILKLVDKYFEMPRHDAVRTLEIYRKSESQADSLTSLFEICRELDFGRGQKYIKIEKPPASFMTAMEDYVKVAP*********************************************************************************************TDLLGLEELTQQVSEMDEKNSLALAIVTSEN*************TMSWELALVTAPSSNVAAVAG*KLAGGLDKLTLDSLYDDAIARNAKRNSSNTVGQQVGSNPFEADSLNQDPFSASSGVTPPANAQMSDMIQQQNFMTQQQQQEQKQEQEPQMIGQNATSSSNPFLDQSLPSHPRQDPFSGLT
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MANSSSGTQPIRKAIAALKDTTKVGLVNLNSENKGLDIAIVKATNHDEVLPKEKHISKILEAVLASRPRADVAYCIQSLAKRLAKTHSWTVALKTLIVIHRALREVDHSFCEELINYSRGRALMFNLSHFRDESSPVAWDHSAWIRNYALYLEERVECFRILRYDVEKSHMGSGRLSIPDLLDQLPSLQQLLFRLLGCKPQGAALYNNLIHYALSIIASESVKLYVSITDGILKLVDKYFEMPRHDAVRTLEIYRKSESQADSLTSLFEICRELDFGRGQKYIKIEKPPASFMTAMEDYVKVAPHIFMLQCTAFSPDFSKTKRCNGDQNVARIEAPKLDDAPGANVSTDRQDSDQPGAAPEPASNDRREAVATQQLIDTEDTQQRTDQSEAAASQQITDLLGLEELTQQVSEMDEKNSLALAIVTSENQPNSENSFTMACQTMSWELALVTAPSSNVAAVAGSKLAGGLDKLTLDSLYDDAIARNAKRNSSNTVGQQVGSNPFEADSLNQDPFSASSGVTPPANAQMSDMIQQQNFMTQQQQQEQKQEQEPQMIGQNATSSSNPFLDQSLPSHPRQDPFSGLT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query583 2.2.26 [Sep-21-2011]
Q9LHS0544 Putative clathrin assembl yes no 0.833 0.893 0.484 1e-135
Q8LBH2571 Putative clathrin assembl no no 0.861 0.879 0.428 1e-118
P94017 692 Putative clathrin assembl no no 0.809 0.682 0.440 1e-113
Q8VYT2601 Putative clathrin assembl no no 0.835 0.810 0.419 1e-108
Q9LVD8591 Putative clathrin assembl no no 0.502 0.495 0.540 1e-95
Q9SA65599 Putative clathrin assembl no no 0.861 0.838 0.283 1e-52
Q8GX47611 Putative clathrin assembl no no 0.867 0.828 0.270 3e-49
Q9ZVN6653 Clathrin coat assembly pr no no 0.497 0.444 0.287 7e-40
Q8LF20653 Putative clathrin assembl no no 0.248 0.222 0.459 2e-30
Q8S9J8635 Probable clathrin assembl no no 0.248 0.228 0.439 3e-28
>sp|Q9LHS0|CAP10_ARATH Putative clathrin assembly protein At5g35200 OS=Arabidopsis thaliana GN=At5g35200 PE=1 SV=1 Back     alignment and function desciption
 Score =  483 bits (1242), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 258/532 (48%), Positives = 345/532 (64%), Gaps = 46/532 (8%)

Query: 11  IRKAIAALKDTTKVGLVNLNSENKGLDIAIVKATNHDEVLPKEKHISKILEAVLASRPRA 70
           +R+ + A+KDTT V L  +NS+ K LDIAIVKATNH E   KE++I  I  A+ A+RPRA
Sbjct: 11  LRRYLGAIKDTTTVSLAKVNSDYKELDIAIVKATNHVERPSKERYIRAIFMAISATRPRA 70

Query: 71  DVAYCIQSLAKRLAKTHSWTVALKTLIVIHRALREVDHSFCEELINYSRGRALMFNLSHF 130
           DVAYCI +LA+RL++TH+W VALKTLIVIHRALREVD +F EE+INYSR R+ M N+SHF
Sbjct: 71  DVAYCIHALARRLSRTHNWAVALKTLIVIHRALREVDQTFHEEVINYSRSRSHMLNMSHF 130

Query: 131 RDESSPVAWDHSAWIRNYALYLEERVECFRILRYDVEKSHMGSGRLSIPDLLDQLPSLQQ 190
           +D+S P AW +SAW+R YAL+LEER+ECFR+L+YDVE     +  L  PDLL+QLP+LQ+
Sbjct: 131 KDDSGPNAWAYSAWVRFYALFLEERLECFRVLKYDVEVDPPRTKDLDTPDLLEQLPALQE 190

Query: 191 LLFRLLGCKPQGAALYNNLIHYALSIIASESVKLYVSITDGILKLVDKYFEMPRHDAVRT 250
           LLFR+L C+P+GAA+ N++I  ALS++ SES K+Y ++TDGI  LVDK+F+M R+DAV+ 
Sbjct: 191 LLFRVLDCQPEGAAVQNHIIQLALSMVISESTKIYQALTDGIDNLVDKFFDMQRNDAVKA 250

Query: 251 LEIYRKSESQADSLTSLFEICRELDFGRGQKYIKIEKPPASFMTAMEDYVKVAPHIFMLQ 310
           L++YR++  QA  L+  FE+C+ ++ GRG+++IKIE+PP SF+ AME+YVK AP      
Sbjct: 251 LDMYRRAVKQAGRLSEFFEVCKSVNVGRGERFIKIEQPPTSFLQAMEEYVKEAP------ 304

Query: 311 CTAFSPDFSKTKRCNGDQNVARIEAPKLDDAPGANVSTDRQDSDQPGAAPEPASNDRREA 370
                           +Q V ++ APK  +          +  ++  A+PEP   +  + 
Sbjct: 305 ---------LAAGVKKEQVVEKLTAPK--EILAIEYEIPPKVVEEKPASPEPVKAEAEKP 353

Query: 371 VATQQLIDTEDTQQRTDQSEAAASQQITDLLGLEELTQQVSEMDEKNSLALAIV-TSENQ 429
           V  Q                        DLL +++    VSE++EKN+LALAIV  S  Q
Sbjct: 354 VEKQ-----------------------PDLLSMDDPAPMVSELEEKNALALAIVPVSVEQ 390

Query: 430 PNSENSFTMACQTMSWELALVTAPSSNVAAVAGSKLAGGLDKLTLDSLYDDAIARNAKRN 489
           P+S   FT    T  WELALVTAPSSN  A A SKLAGGLDKLTLDSLY+DAI  + ++N
Sbjct: 391 PHSTTDFTNGNST-GWELALVTAPSSNEGAAADSKLAGGLDKLTLDSLYEDAIRVSQQQN 449

Query: 490 SSNTVGQQVGSNPFEADSLNQDPFSASSGVTPPANAQMSDMIQQQNFMTQQQ 541
            S    +Q   NP     +   PF AS+GV  P   QM++    Q F  Q Q
Sbjct: 450 RSYNPWEQ---NPVHNGHMMHQPFYASNGVAAPQPFQMANQ-NHQTFGYQHQ 497

Arabidopsis thaliana (taxid: 3702)
>sp|Q8LBH2|CAP8_ARATH Putative clathrin assembly protein At2g01600 OS=Arabidopsis thaliana GN=At2g01600 PE=2 SV=2 Back     alignment and function description
>sp|P94017|CAP9_ARATH Putative clathrin assembly protein At1g14910 OS=Arabidopsis thaliana GN=At1g14910 PE=2 SV=2 Back     alignment and function description
>sp|Q8VYT2|CAP6_ARATH Putative clathrin assembly protein At4g25940 OS=Arabidopsis thaliana GN=At4g25940 PE=2 SV=1 Back     alignment and function description
>sp|Q9LVD8|CAP7_ARATH Putative clathrin assembly protein At5g57200 OS=Arabidopsis thaliana GN=At5g57200 PE=3 SV=1 Back     alignment and function description
>sp|Q9SA65|CAP4_ARATH Putative clathrin assembly protein At1g03050 OS=Arabidopsis thaliana GN=At1g03050 PE=2 SV=1 Back     alignment and function description
>sp|Q8GX47|CAP3_ARATH Putative clathrin assembly protein At4g02650 OS=Arabidopsis thaliana GN=At4g02650 PE=2 SV=2 Back     alignment and function description
>sp|Q9ZVN6|AP180_ARATH Clathrin coat assembly protein AP180 OS=Arabidopsis thaliana GN=AP180 PE=1 SV=1 Back     alignment and function description
>sp|Q8LF20|CAP2_ARATH Putative clathrin assembly protein At2g25430 OS=Arabidopsis thaliana GN=At2g25430 PE=1 SV=2 Back     alignment and function description
>sp|Q8S9J8|CAP1_ARATH Probable clathrin assembly protein At4g32285 OS=Arabidopsis thaliana GN=At4g32285 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query583
359484820542 PREDICTED: putative clathrin assembly pr 0.919 0.988 0.551 1e-174
255585481555 clathrin assembly protein, putative [Ric 0.914 0.960 0.548 1e-171
297743713510 unnamed protein product [Vitis vinifera] 0.869 0.994 0.548 1e-168
297739011505 unnamed protein product [Vitis vinifera] 0.840 0.970 0.5 1e-138
359484228555 PREDICTED: putative clathrin assembly pr 0.828 0.870 0.5 1e-137
302801339553 hypothetical protein SELMODRAFT_268581 [ 0.840 0.886 0.495 1e-137
449465625554 PREDICTED: putative clathrin assembly pr 0.833 0.877 0.497 1e-135
15238435544 putative clathrin assembly protein [Arab 0.833 0.893 0.484 1e-133
388505726548 unknown [Lotus japonicus] 0.816 0.868 0.480 1e-132
357478253545 hypothetical protein MTR_4g115420 [Medic 0.818 0.875 0.494 1e-130
>gi|359484820|ref|XP_002271781.2| PREDICTED: putative clathrin assembly protein At5g35200-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  616 bits (1589), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 318/577 (55%), Positives = 405/577 (70%), Gaps = 41/577 (7%)

Query: 1   MANSSSGTQPIRKAIAALKDTTKVGLVNLNSENKGLDIAIVKATNHDEVLPKEKHISKIL 60
           MA   S  Q +R+AI ALKD+TKVGL  +NS  K LDIAIVKATNHDEVL KEKHI  I 
Sbjct: 1   MAAGGSTQQSLRRAIGALKDSTKVGLAKVNSGYKALDIAIVKATNHDEVLAKEKHIRTIF 60

Query: 61  EAVLASRPRADVAYCIQSLAKRLAKTHSWTVALKTLIVIHRALREVDHSFCEELINYSRG 120
            A+ +S PRADVAYCIQ+LAKRLAKT +W VALKTLIV+HRA+RE+D +F EE INYS+ 
Sbjct: 61  GALSSSTPRADVAYCIQALAKRLAKTQNWAVALKTLIVMHRAMREIDSTFREEFINYSQN 120

Query: 121 RALMFNLSHFRDESSPVAWDHSAWIRNYALYLEERVECFRILRYDVEKSHMGSGRLSIPD 180
           RALM NLSHF+D+S P AW++SAW+R YALYLEE +ECFR+L+YD++  H  +  L  PD
Sbjct: 121 RALMLNLSHFKDDSGPNAWNYSAWVRTYALYLEEHLECFRLLKYDIQTYHSRTRELDTPD 180

Query: 181 LLDQLPSLQQLLFRLLGCKPQGAALYNNLIHYALSIIASESVKLYVSITDGILKLVDKYF 240
           LL+QLP+LQQLLFRLL C+P+GAA+YN LI YALSI+A E VKLY +IT+GIL LVDKYF
Sbjct: 181 LLEQLPALQQLLFRLLACQPEGAAVYNKLIQYALSILAGECVKLYGAITNGILNLVDKYF 240

Query: 241 EMPRHDAVRTLEIYRKSESQADSLTSLFEICRELDFGRGQKYIKIEKPPASFMTAMEDYV 300
           EM +HDAVR LEIY+K+ +QA+ L+  FEICR LDFGR Q ++KIE+PPA+FMTAME+YV
Sbjct: 241 EMQKHDAVRALEIYQKAGNQAEKLSEFFEICRGLDFGRVQ-FVKIEQPPATFMTAMEEYV 299

Query: 301 KVAPHIFMLQCTAFSPDFSKTKRCNGDQNVARIEAPKLDDAPGANVSTDRQDSDQPGAAP 360
           K  P     Q   +    +   + N  +N  R +           VS  +QD D      
Sbjct: 300 KDTPCTLACQPITYP---TNDVKVNLKKNAIRED---------NRVSDQKQDFD------ 341

Query: 361 EPASNDRREAVATQQLID---TEDTQQRTDQSEAAASQQITDLLGLEELTQQVSEMDEKN 417
                        ++++D   T     R+DQ EAAA  Q+T+LL L+EL ++ SE+DEKN
Sbjct: 342 ------------VEEILDPSLTSPEPPRSDQIEAAAKLQVTELLDLDELIKEASELDEKN 389

Query: 418 SLALAIVTSENQPNSENSFTMACQTMSWELALVTAPSSNVAAVAGSKLAGGLDKLTLDSL 477
           +L +AI TSEN  NS N   ++CQT  WELALVTAPSS+ AAVA SKLAGG+DKLTLDSL
Sbjct: 390 ALGVAIFTSENPSNSANGLNLSCQTTGWELALVTAPSSSGAAVAESKLAGGMDKLTLDSL 449

Query: 478 YDDAIARNAKRNSSNTVGQQVGSNPFEADSLNQDPFSASSGVTPPANAQMSDMIQQQNFM 537
           YDDAIA  A +N +  +G Q+GSNPFE  +  +DPF ASS + P  N +M+ + QQ+  +
Sbjct: 450 YDDAIAGRANQNRTYHMG-QLGSNPFELANSTRDPFYASSNIAPSTNVEMAGITQQEEGL 508

Query: 538 TQQQQQEQKQEQEPQMIGQNATSS-SNPFLDQSLPSH 573
             QQQQ ++      +IG++ T+   NPF++  +PSH
Sbjct: 509 MMQQQQYRQ-----PLIGEDPTNPFGNPFVEPGIPSH 540

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255585481|ref|XP_002533433.1| clathrin assembly protein, putative [Ricinus communis] gi|223526721|gb|EEF28953.1| clathrin assembly protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|297743713|emb|CBI36596.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297739011|emb|CBI28256.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359484228|ref|XP_002285448.2| PREDICTED: putative clathrin assembly protein At5g35200 isoform 1 [Vitis vinifera] gi|359484230|ref|XP_003633084.1| PREDICTED: putative clathrin assembly protein At5g35200 isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|302801339|ref|XP_002982426.1| hypothetical protein SELMODRAFT_268581 [Selaginella moellendorffii] gi|300150018|gb|EFJ16671.1| hypothetical protein SELMODRAFT_268581 [Selaginella moellendorffii] Back     alignment and taxonomy information
>gi|449465625|ref|XP_004150528.1| PREDICTED: putative clathrin assembly protein At5g35200-like [Cucumis sativus] gi|449526473|ref|XP_004170238.1| PREDICTED: putative clathrin assembly protein At5g35200-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|15238435|ref|NP_198370.1| putative clathrin assembly protein [Arabidopsis thaliana] gi|46395999|sp|Q9LHS0.1|CAP10_ARATH RecName: Full=Putative clathrin assembly protein At5g35200 gi|8978352|dbj|BAA98205.1| unnamed protein product [Arabidopsis thaliana] gi|19698875|gb|AAL91173.1| unknown protein [Arabidopsis thaliana] gi|23198334|gb|AAN15694.1| unknown protein [Arabidopsis thaliana] gi|332006561|gb|AED93944.1| putative clathrin assembly protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|388505726|gb|AFK40929.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|357478253|ref|XP_003609412.1| hypothetical protein MTR_4g115420 [Medicago truncatula] gi|355510467|gb|AES91609.1| hypothetical protein MTR_4g115420 [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query583
TAIR|locus:2182432544 AT5G35200 [Arabidopsis thalian 0.521 0.558 0.526 5.5e-113
TAIR|locus:2165615591 AT5G57200 [Arabidopsis thalian 0.843 0.832 0.397 2.1e-93
TAIR|locus:2006727 692 AT1G14910 [Arabidopsis thalian 0.768 0.647 0.419 3.1e-90
TAIR|locus:2120780601 AT4G25940 [Arabidopsis thalian 0.277 0.269 0.593 8e-89
TAIR|locus:2049587571 AT2G01600 [Arabidopsis thalian 0.756 0.772 0.428 1.2e-88
TAIR|locus:2040115653 AT2G25430 [Arabidopsis thalian 0.248 0.222 0.459 1.5e-48
TAIR|locus:505006543635 AT4G32285 [Arabidopsis thalian 0.248 0.228 0.439 1.6e-47
TAIR|locus:2132382611 AT4G02650 [Arabidopsis thalian 0.283 0.270 0.412 3e-41
TAIR|locus:2007524599 AT1G03050 [Arabidopsis thalian 0.260 0.253 0.449 1.5e-40
TAIR|locus:2205558653 AT1G05020 [Arabidopsis thalian 0.252 0.225 0.365 1.9e-33
TAIR|locus:2182432 AT5G35200 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 841 (301.1 bits), Expect = 5.5e-113, Sum P(2) = 5.5e-113
 Identities = 160/304 (52%), Positives = 218/304 (71%)

Query:     1 MANSSSGTQPIRKAIAALKDTTKVGLVNLNSENKGLDIAIVKATNHDEVLPKEKHISKIL 60
             M+        +R+ + A+KDTT V L  +NS+ K LDIAIVKATNH E   KE++I  I 
Sbjct:     1 MSGGGGSQSSLRRYLGAIKDTTTVSLAKVNSDYKELDIAIVKATNHVERPSKERYIRAIF 60

Query:    61 EAVLASRPRADVAYCIQSLAKRLAKTHSWTVALKTLIVIHRALREVDHSFCEELINYSRG 120
              A+ A+RPRADVAYCI +LA+RL++TH+W VALKTLIVIHRALREVD +F EE+INYSR 
Sbjct:    61 MAISATRPRADVAYCIHALARRLSRTHNWAVALKTLIVIHRALREVDQTFHEEVINYSRS 120

Query:   121 RALMFNLSHFRDESSPVAWDHSAWIRNYALYLEERVECFRILRYDVEKSHMGSGRXXXXX 180
             R+ M N+SHF+D+S P AW +SAW+R YAL+LEER+ECFR+L+YDVE     +       
Sbjct:   121 RSHMLNMSHFKDDSGPNAWAYSAWVRFYALFLEERLECFRVLKYDVEVDPPRTKDLDTPD 180

Query:   181 XXXXXXXXXXXXXXXXGCKPQGAALYNNLIHYALSIIASESVKLYVSITDGILKLVDKYF 240
                              C+P+GAA+ N++I  ALS++ SES K+Y ++TDGI  LVDK+F
Sbjct:   181 LLEQLPALQELLFRVLDCQPEGAAVQNHIIQLALSMVISESTKIYQALTDGIDNLVDKFF 240

Query:   241 EMPRHDAVRTLEIYRKSESQADSLTSLFEICRELDFGRGQKYIKIEKPPASFMTAMEDYV 300
             +M R+DAV+ L++YR++  QA  L+  FE+C+ ++ GRG+++IKIE+PP SF+ AME+YV
Sbjct:   241 DMQRNDAVKALDMYRRAVKQAGRLSEFFEVCKSVNVGRGERFIKIEQPPTSFLQAMEEYV 300

Query:   301 KVAP 304
             K AP
Sbjct:   301 KEAP 304
GO:0005543 "phospholipid binding" evidence=IEA
GO:0005545 "1-phosphatidylinositol binding" evidence=IEA
GO:0030118 "clathrin coat" evidence=IEA
GO:0030276 "clathrin binding" evidence=IEA
GO:0048268 "clathrin coat assembly" evidence=IEA
GO:0005886 "plasma membrane" evidence=IDA
TAIR|locus:2165615 AT5G57200 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2006727 AT1G14910 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2120780 AT4G25940 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2049587 AT2G01600 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040115 AT2G25430 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:505006543 AT4G32285 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2132382 AT4G02650 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2007524 AT1G03050 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2205558 AT1G05020 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LHS0CAP10_ARATHNo assigned EC number0.48490.83360.8933yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00017115001
SubName- Full=Chromosome chr11 scaffold_14, whole genome shotgun sequence; (530 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query583
pfam07651278 pfam07651, ANTH, ANTH domain 2e-84
cd03564117 cd03564, ANTH_AP180_CALM, ANTH domain family; comp 4e-38
smart00273127 smart00273, ENTH, Epsin N-terminal homology (ENTH) 4e-33
pfam01417124 pfam01417, ENTH, ENTH domain 9e-06
cd00197115 cd00197, VHS_ENTH_ANTH, VHS, ENTH and ANTH domain 0.004
>gnl|CDD|219498 pfam07651, ANTH, ANTH domain Back     alignment and domain information 
 Score =  264 bits (677), Expect = 2e-84
 Identities = 110/281 (39%), Positives = 169/281 (60%), Gaps = 16/281 (5%)

Query: 33  NKGLDIAIVKATNHDEVLPKEKHISKILEAVLASRPRADVAYCIQSLAKRLAKTHSWTVA 92
           +  L++A+VKAT+HDEV PK+KH+ +IL   + +   A VA    +L++RL  T +W VA
Sbjct: 1   DSDLEVAVVKATSHDEVPPKKKHVREIL---VGTSSPAKVAALFWALSRRLPLTRNWVVA 57

Query: 93  LKTLIVIHRALREVDHSFCEELINYSRGRALMFNLSHFRDESSPVAWDHSAWIRNYALYL 152
           LK LI++H+ LRE   S  +EL+   R  + +  +S F D+S  + WD+ A+IR YA YL
Sbjct: 58  LKALILVHKLLREGHPSVLQELLRARRRISSLLRISSF-DDSMSLTWDYGAFIRAYAKYL 116

Query: 153 EERVECFRILRYD--VEKSHMGSGR----------LSIPDLLDQLPSLQQLLFRLLGCKP 200
           +ER++  R L  D   E+   GS R          +S+ DLLD +P LQ+LL  LL CKP
Sbjct: 117 DERLDFHRKLPRDPTFERVEYGSLRAVGDPNSRYTMSMEDLLDIIPKLQKLLDALLKCKP 176

Query: 201 QGAALYNNLIHYALSIIASESVKLYVSITDGILKLVDKYFEMPRHDAVRTLEIYRKSESQ 260
            G AL N  I  AL ++  ES  LY +I +GI+ L++K+FEM + DA   L IY++  SQ
Sbjct: 177 TGNALTNECIIAALILLIKESFGLYGAINEGIINLLEKFFEMSKPDADAALGIYKRFVSQ 236

Query: 261 ADSLTSLFEICRELDFGRGQKYIKIEKPPASFMTAMEDYVK 301
            + L   +E+C+ L + R  +  K+   P + + A+E++++
Sbjct: 237 FERLKEFYEVCKNLGYFRSLEIPKLPHIPPNLLDALEEHLR 277

AP180 is an endocytotic accessory proteins that has been implicated in the formation of clathrin-coated pits. The domain is involved in phosphatidylinositol 4,5-bisphosphate binding and is a universal adaptor for nucleation of clathrin coats. Length = 278
>gnl|CDD|239622 cd03564, ANTH_AP180_CALM, ANTH domain family; composed of adaptor protein 180 (AP180), clathrin assembly lymphoid myeloid leukemia protein (CALM) and similar proteins Back     alignment and domain information
>gnl|CDD|214594 smart00273, ENTH, Epsin N-terminal homology (ENTH) domain Back     alignment and domain information
>gnl|CDD|216488 pfam01417, ENTH, ENTH domain Back     alignment and domain information
>gnl|CDD|238118 cd00197, VHS_ENTH_ANTH, VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 583
KOG0251491 consensus Clathrin assembly protein AP180 and rela 100.0
PF07651280 ANTH: ANTH domain; InterPro: IPR011417 AP180 is an 100.0
KOG0980 980 consensus Actin-binding protein SLA2/Huntingtin-in 100.0
cd03564117 ANTH_AP180_CALM ANTH domain family; composed of ad 99.97
smart00273127 ENTH Epsin N-terminal homology (ENTH) domain. 99.95
PF01417125 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (E 99.34
cd00197115 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil 99.18
cd03571123 ENTH_epsin ENTH domain, Epsin family; The epsin (E 99.05
KOG2056336 consensus Equilibrative nucleoside transporter pro 98.63
cd03572122 ENTH_epsin_related ENTH domain, Epsin Related fami 97.95
KOG2057499 consensus Predicted equilibrative nucleoside trans 97.5
cd03568144 VHS_STAM VHS domain family, STAM subfamily; member 95.38
cd03569142 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s 95.37
PF00790140 VHS: VHS domain; InterPro: IPR002014 The VHS domai 95.23
smart00288133 VHS Domain present in VPS-27, Hrs and STAM. Unpubl 94.88
cd03567139 VHS_GGA VHS domain family, GGA subfamily; GGA (Gol 94.86
cd03565141 VHS_Tom1 VHS domain family, Tom1 subfamily; The VH 94.81
cd03561133 VHS VHS domain family; The VHS domain is present i 94.34
KOG0414 1251 consensus Chromosome condensation complex Condensi 81.22
>KOG0251 consensus Clathrin assembly protein AP180 and related proteins, contain ENTH domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=1e-88  Score=736.90  Aligned_cols=462  Identities=34%  Similarity=0.550  Sum_probs=351.5

Q ss_pred             HHHHhhcccchhhhhhccCCCchHHHHHHhhcCCCCCCCchhHHHHHHHHHhcCCCCCcHHHHHHHHHHhhccCCChHHH
Q 037435           13 KAIAALKDTTKVGLVNLNSENKGLDIAIVKATNHDEVLPKEKHISKILEAVLASRPRADVAYCIQSLAKRLAKTHSWTVA   92 (583)
Q Consensus        13 ka~GalKD~tsiglAkv~~~~~dLdvAIvKAT~hde~PPKeKHVr~Il~~T~~~rp~a~v~~~v~aL~rRL~kTrnWiVa   92 (583)
                      +|+|++||++|||+|+|.+.++++++||+|||+|+++|||+|||+.|+.+|+.++  +++.+|+++|++||.+||||+||
T Consensus         1 ~~~gaiKD~~s~~~a~v~~~~~~l~~AV~KATsh~~~ppk~k~l~~Il~~ts~~~--~~i~~~v~aLs~Rl~~TrnW~VA   78 (491)
T KOG0251|consen    1 RAIGAIKDRTSIGKASVASAGSDLEKAVVKATSHDDMPPKDKYLDEILSATSSSP--ASIPSCVHALSERLNKTRNWTVA   78 (491)
T ss_pred             CCccccchhhhhHHHHhhhhhhhHHHHHHhhccCCCCCccHHHHHHHHHHhcCCc--ccHHHHHHHHHHHhCCCcceeeh
Confidence            4789999999999999998899999999999999999999999999999999875  89999999999999999999999


Q ss_pred             HHHHHHHHHHHhhCChhhHHHHHHHhhcCCCccccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhccccccc---
Q 037435           93 LKTLIVIHRALREVDHSFCEELINYSRGRALMFNLSHFRDESSPVAWDHSAWIRNYALYLEERVECFRILRYDVEKS---  169 (583)
Q Consensus        93 lKtLIllHrLLreG~p~f~eell~y~r~r~~iL~Ls~F~D~Ss~~s~d~safVR~Ya~YLdeRL~~~r~~~~d~~~~---  169 (583)
                      +|+||||||||++|++.|.++++.    +.++|+|++|+|++++.+|||++|||+|++||+||+.||+.+++|++..   
T Consensus        79 lKsLIliH~ll~~G~~~f~~~l~~----~~~~l~lS~F~d~s~~~~~d~safVR~Ya~YLderl~~~~~~~~d~~~~~~~  154 (491)
T KOG0251|consen   79 LKALILIHRLLKEGDPSFEQELLS----RNLILNLSDFRDKSSSLTWDMSAFVRTYALYLDERLECYRVLGFDIEKVKRG  154 (491)
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHh----cccccchhhhhcccccccchhhHHHHHHHHHHHHHHHHHHHhccccccccCc
Confidence            999999999999999999887753    3378999999999999999999999999999999999999999998854   


Q ss_pred             --CCccCCCC-HHHHHhhHHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChhh
Q 037435          170 --HMGSGRLS-IPDLLDQLPSLQQLLFRLLGCKPQGAALYNNLIHYALSIIASESVKLYVSITDGILKLVDKYFEMPRHD  246 (583)
Q Consensus       170 --~~r~r~l~-~e~LL~~L~~LQ~LLdrlL~crP~g~a~~N~lil~Al~llvkDSf~LY~~indgii~LLe~fFeM~k~d  246 (583)
                        ....+++. .+.+|+.+++||.||+++|+|+|.+.+++|+||++||.+||+|||+||++||+||++|||+||+|+++|
T Consensus       155 ~~k~~~~~~~~~~~~l~~i~~LQ~lld~ll~~~p~~~~~~N~lI~~A~~lvvkdsf~ly~~i~~gi~~Llekffem~~~~  234 (491)
T KOG0251|consen  155 KEKTKDRSSKSTDKLLKTIPKLQNLLDRLLKCRPTGSALNNGLIIEAFELVVKDSFKLYAAINDGIINLLEKFFEMSKHD  234 (491)
T ss_pred             ccccccccccchHHHHHHHHHHHHHHHHHHcCCCCchhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHH
Confidence              23345555 788999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHhhhcccccccccccCCCCChhhHHHHHHHHHhCCcccccccccCCCCcccccccCC
Q 037435          247 AVRTLEIYRKSESQADSLTSLFEICRELDFGRGQKYIKIEKPPASFMTAMEDYVKVAPHIFMLQCTAFSPDFSKTKRCNG  326 (583)
Q Consensus       247 a~kaLeiYkRf~kQ~e~L~~Fy~~ck~l~~~r~~~iP~L~~~P~~~L~~LEEylrda~~~~~~~~~~~~~~~~~~~~~~~  326 (583)
                      |+++|+|||||.+|+++|.+||++||++|+.|+++||+|+++|.++|++|||||++.+..+.+.... ++ .    ....
T Consensus       235 a~~al~iykr~~~q~e~L~~f~~~ck~~g~~r~~~iP~l~~i~~s~l~~lEe~l~~~~~~~~~~~~~-~~-~----~~~~  308 (491)
T KOG0251|consen  235 AIKALDIYKRFLSQTEKLSEFLKVCKSVGVDRGFEIPVLKRIPISLLEALEEHLRDVEGGKAKTAKV-SP-V----SQFS  308 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcchhhcCHHHHHHHHHHHhhccccccccccc-CC-c----cccc
Confidence            9999999999999999999999999999999999999999999999999999999976433221100 00 0    0000


Q ss_pred             CchhhhhcCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCccchhhhcccccccccchhccchhhhhhhccCccccCCCC
Q 037435          327 DQNVARIEAPKLDDAPGANVSTDRQDSDQPGAA--PEPASNDRREAVATQQLIDTEDTQQRTDQSEAAASQQITDLLGLE  404 (583)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~l~  404 (583)
                      .      +....+.....++ +.+.++ +-++.  +..+.+   ..|.+.+.     .|..+++    ....++|++.+.
T Consensus       309 ~------~~~~~e~~~~~~~-~~e~~~-~i~~~~~~~~~~~---~~~~~~~~-----~~~~~~~----~~~~~~~~~~~~  368 (491)
T KOG0251|consen  309 T------DFESSESSSRLEE-PEEQKE-VIEELQEPLEQEE---DQPSPNSE-----NPEANDQ----AGIATDDLLLQP  368 (491)
T ss_pred             c------chhcccccccccc-chhhhh-ccccccccccccc---cCCCCCCC-----Ccccccc----ccccCcchhhcc
Confidence            0      0000000000000 000000 00101  111100   00000000     0000010    111223666666


Q ss_pred             ccccccchhcccccceeecccCCCCCCCCccccccccCccchhhhccCCCCcchhhccccccCCccchhccccchHHHHH
Q 037435          405 ELTQQVSEMDEKNSLALAIVTSENQPNSENSFTMACQTMSWELALVTAPSSNVAAVAGSKLAGGLDKLTLDSLYDDAIAR  484 (583)
Q Consensus       405 ~~~~~~~~~e~~n~lala~~~~~~~~~~~~~~~~~~~~~~WElaLV~~~s~~~~~~~~~~l~GG~d~l~Ld~~Y~~~~~~  484 (583)
                      +..+..++.+..|+||||+ ++ +          ....+|||+++|+..++.....+..++||||   +||||| ++.++
T Consensus       369 ~~~~~~~~~~~~~~l~~~~-~~-~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---~~~~~~-~~~~~  432 (491)
T KOG0251|consen  369 DNLPMFSASTAPNALALAL-PF-P----------NHTGSGWGLPAATPDSAAWETATMQALAGGL---TLNSMV-NNPFR  432 (491)
T ss_pred             cCCCccccccCcchhhcCC-CC-C----------CCCCCccccccCCcchhhhhhcccccccccc---eecccc-CCchh
Confidence            6677899999999999999 32 1          2246789999998776654322223899999   999999 88887


Q ss_pred             HhhhcCCCCCCCCC---CCCCCCCCcCCCCCccccCCCCCC
Q 037435          485 NAKRNSSNTVGQQV---GSNPFEADSLNQDPFSASSGVTPP  522 (583)
Q Consensus       485 ~~~~~~~~~~g~~~---~p~P~~~~~~~~DPFaaS~~v~PP  522 (583)
                      +.++.+.++.|++.   .|++......+.+||+.|..+++|
T Consensus       433 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~a~~  473 (491)
T KOG0251|consen  433 ATVQTAPQGQGSQPFGAQPMPAMAALPQPYPVGQPPFPAQL  473 (491)
T ss_pred             hhccccccccCCCccccCCchhhhcccccCCCCCCCCcCcc
Confidence            76544333335332   231111112344888888888887

>PF07651 ANTH: ANTH domain; InterPro: IPR011417 AP180 is an endocytotic accessory protein that has been implicated in the formation of clathrin-coated pits Back     alignment and domain information
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton] Back     alignment and domain information
>cd03564 ANTH_AP180_CALM ANTH domain family; composed of adaptor protein 180 (AP180), clathrin assembly lymphoid myeloid leukemia protein (CALM) and similar proteins Back     alignment and domain information
>smart00273 ENTH Epsin N-terminal homology (ENTH) domain Back     alignment and domain information
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins Back     alignment and domain information
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain Back     alignment and domain information
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis Back     alignment and domain information
>KOG2056 consensus Equilibrative nucleoside transporter protein [Nucleotide transport and metabolism] Back     alignment and domain information
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain Back     alignment and domain information
>KOG2057 consensus Predicted equilibrative nucleoside transporter protein [Nucleotide transport and metabolism] Back     alignment and domain information
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) Back     alignment and domain information
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) Back     alignment and domain information
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM Back     alignment and domain information
>smart00288 VHS Domain present in VPS-27, Hrs and STAM Back     alignment and domain information
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins Back     alignment and domain information
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein Back     alignment and domain information
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) Back     alignment and domain information
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query583
1hf8_A289 Calm-N N-Terminal Domain Of Clathrin Assembly Lymph 5e-21
3zyk_A296 Structure Of Calm (Picalm) Anth Domain Length = 296 6e-21
3zym_A310 Structure Of Calm (Picalm) In Complex With Vamp8 Le 5e-20
3zyl_A271 Structure Of A Truncated Calm (Picalm) Anth Domain 9e-20
1hx8_A299 Crystal Structure Of N-Terminal Domain Of Drosophil 1e-16
>pdb|1HF8|A Chain A, Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid Myeloid Leukaemia Protein Length = 289 Back     alignment and structure 
Iteration: 1

 Score = 99.4 bits (246), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 63/265 (23%), Positives = 124/265 (46%), Gaps = 12/265 (4%)
Query: 40  IVKATNHDEVLPKEKHISKILEAVLASRPRADVAYCIQSLAKRLAKTHSWTVALKTLIVI 99
           + KAT H+ + PK+KH+  +++    +    ++     SL +R   + SW V  K+LI  
Sbjct: 26  VCKATTHEIMGPKKKHLDYLIQC--TNEMNVNIPQLADSLFERTTNS-SWVVVFKSLITT 82
Query: 100 HRALREVDHSFCEELINYSRGRALMFNLSHFRDESSPVAWDHSAWIRNYALYLEERVECF 159
           H  +   +    E  I Y   R  +FNLS+F D+S    +D S +IR Y+ YL E+   +
Sbjct: 83  HHLMVYGN----ERFIQYLASRNTLFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVSY 138
Query: 160 RILRYDVEKSHMGSGRXXXXXXXXXXXXXX----XXXXXXXGCKPQGAALYNNLIHYALS 215
           R + +D  K   G+                                   L N +I+ A  
Sbjct: 139 RQVAFDFTKVKRGADGVMRTMNTEKLLKTVPIIQNQMDALLDFNVNSNELTNGVINAAFM 198
Query: 216 IIASESVKLYVSITDGILKLVDKYFEMPRHDAVRTLEIYRKSESQADSLTSLFEICRELD 275
           ++  ++++L+ +  +GI+ L++KYF+M ++     L+IY+K  ++   ++   ++  ++ 
Sbjct: 199 LLFKDAIRLFAAYNEGIINLLEKYFDMKKNQCKEGLDIYKKFLTRMTRISEFLKVAEQVG 258
Query: 276 FGRGQKYIKIEKPPASFMTAMEDYV 300
             RG     + + P+S + A+E ++
Sbjct: 259 IDRGD-IPDLSQAPSSLLDALEQHL 282
>pdb|3ZYK|A Chain A, Structure Of Calm (Picalm) Anth Domain Length = 296 Back     alignment and structure
>pdb|3ZYM|A Chain A, Structure Of Calm (Picalm) In Complex With Vamp8 Length = 310 Back     alignment and structure
>pdb|3ZYL|A Chain A, Structure Of A Truncated Calm (Picalm) Anth Domain Length = 271 Back     alignment and structure
>pdb|1HX8|A Chain A, Crystal Structure Of N-Terminal Domain Of Drosophila Ap180 Length = 299 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query583
3zyl_A271 Phosphatidylinositol-binding clathrin assembly PR; 2e-77
1hx8_A299 Synapse-enriched clathrin adaptor protein LAP; all 9e-75
3zym_A310 Phosphatidylinositol-binding clathrin assembly PR 3e-72
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-06
1inz_A148 EPS15-interacting portein(epsin); alpha-helix, rik 5e-06
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A* Length = 271 Back     alignment and structure
 Score =  245 bits (625), Expect = 2e-77
 Identities = 67/275 (24%), Positives = 131/275 (47%), Gaps = 13/275 (4%)

Query: 9   QPIRKAIAALKDTTKVGLVNLNSENKGLDIAIVKATNHDEVLPKEKHISKILEAVLASRP 68
             I  +  +L D       ++      +   + KAT H+ + PK+KH+  ++     +  
Sbjct: 4   IGIHMSGQSLTDRITAAQHSVTG--SAVSKTVCKATTHEIMGPKKKHLDYLI--QCTNEM 59

Query: 69  RADVAYCIQSLAKRLAKTHSWTVALKTLIVIHRALREVDHSFCEELINYSRGRALMFNLS 128
             ++     SL +R   + SW V  K+LI  H  +   +  F + L      R  +FNLS
Sbjct: 60  NVNIPQLADSLFERTTNS-SWVVVFKSLITTHHLMVYGNERFIQYL----ASRNTLFNLS 114

Query: 129 HFRDESSPVAWDHSAWIRNYALYLEERVECFRILRYDVEKSHMGSG----RLSIPDLLDQ 184
           +F D+S    +D S +IR Y+ YL E+   +R + +D  K   G+      ++   LL  
Sbjct: 115 NFLDKSGLQGYDMSTFIRRYSRYLNEKAVSYRQVAFDFTKVKRGADGVMRTMNTEKLLKT 174

Query: 185 LPSLQQLLFRLLGCKPQGAALYNNLIHYALSIIASESVKLYVSITDGILKLVDKYFEMPR 244
           +P +Q  +  LL        L N +I+ A  ++  ++++L+ +  +GI+ L++KYF+M +
Sbjct: 175 VPIIQNQMDALLDFNVNSNELTNGVINAAFMLLFKDAIRLFAAYNEGIINLLEKYFDMKK 234

Query: 245 HDAVRTLEIYRKSESQADSLTSLFEICRELDFGRG 279
           +     L+IY+K  ++   ++   ++  ++   RG
Sbjct: 235 NQCKEGLDIYKKFLTRMTRISEFLKVAEQVGIDRG 269
>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha helices repeats, coiled-coil, endocytosis/exocytosis complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2 a.118.9.3 Length = 299 Back     alignment and structure
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus} Length = 310 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1 Length = 148 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query583
1hx8_A299 Synapse-enriched clathrin adaptor protein LAP; all 100.0
3zym_A310 Phosphatidylinositol-binding clathrin assembly PR 100.0
3zyl_A271 Phosphatidylinositol-binding clathrin assembly PR; 100.0
1eyh_A144 Epsin; superhelix of helices, cell cycle; 1.56A {R 99.48
1inz_A148 EPS15-interacting portein(epsin); alpha-helix, rik 99.46
1xgw_A176 Epsin 4; ENTH, enthoprotin, clathrin-associated, e 99.2
3onk_A150 Epsin-3, ENT3; helix, protein transport; 2.09A {Sa 99.17
1vdy_A140 Hypothetical protein (RAFL09-17-B18); structural g 98.37
1elk_A157 Target of MYB1; superhelix of helices, endocytosis 95.57
3ldz_A140 STAM-1, signal transducing adapter molecule 1; ubi 95.28
1x5b_A163 Signal transducing adaptor molecule 2; VHS domain, 95.26
3rru_A152 TOM1L1 protein; structural genomics, PSI-biology, 95.23
3g2s_A149 C-terminal fragment of sortilin-related receptor; 95.19
1juq_A171 ADP-ribosylation factor binding protein GGA3; prot 95.1
1mhq_A148 ADP-ribosylation factor binding protein GGA2; supe 95.04
3zyq_A226 Hepatocyte growth factor-regulated tyrosine kinas 94.51
1dvp_A220 HRS, hepatocyte growth factor-regulated tyrosine k 94.15
>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha helices repeats, coiled-coil, endocytosis/exocytosis complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2 a.118.9.3 Back     alignment and structure
Probab=100.00  E-value=3.9e-72  Score=578.90  Aligned_cols=278  Identities=26%  Similarity=0.456  Sum_probs=244.6

Q ss_pred             chhHHHHHHHhhc-ccchhhhhhccCCCchHHHHHHhhcCCCCCCCchhHHHHHHHHHhcCCCCCcHHHHHHHHHHhhcc
Q 037435            7 GTQPIRKAIAALK-DTTKVGLVNLNSENKGLDIAIVKATNHDEVLPKEKHISKILEAVLASRPRADVAYCIQSLAKRLAK   85 (583)
Q Consensus         7 ~~~~~rka~GalK-D~tsiglAkv~~~~~dLdvAIvKAT~hde~PPKeKHVr~Il~~T~~~rp~a~v~~~v~aL~rRL~k   85 (583)
                      +.++||+++||+| |+|++          ++++||+|||+|+++|||+||||+||.+|+.++  +++++|+|+|.+|+ +
T Consensus         4 ~~~~~~~~~~a~k~~~~~~----------~l~kaV~KAT~~~~~ppk~Khv~~ii~~t~~~~--~~~~~~~~~L~~R~-~   70 (299)
T 1hx8_A            4 AGQTINDRLLAARHSLAGQ----------GLAKSVCKATTEECIGPKKKHLDYLVHCANEPN--VSIPHLANLLIERS-Q   70 (299)
T ss_dssp             ------------------C----------HHHHHHHHHSCSSSSCCCHHHHHHHHHHHHCTT--SCHHHHHHHHHHHH-T
T ss_pred             chHHHHHHHHHHhhccchh----------HHHHHHHhccCCCCCCCCHHHHHHHHHHHcCCC--CCHHHHHHHHHhhc-c
Confidence            4678999999999 99886          566799999999999999999999999999875  78899999999995 8


Q ss_pred             CCChHHHHHHHHHHHHHHhhCChhhHHHHHHHhhcCCCccccccccCCCC-----------CCCcchhHHHHHHHHHHHH
Q 037435           86 THSWTVALKTLIVIHRALREVDHSFCEELINYSRGRALMFNLSHFRDESS-----------PVAWDHSAWIRNYALYLEE  154 (583)
Q Consensus        86 TrnWiValKtLIllHrLLreG~p~f~eell~y~r~r~~iL~Ls~F~D~Ss-----------~~s~d~safVR~Ya~YLde  154 (583)
                      ++||+|+||+|||||||||||+|.|.+++    .+++++|+|++|+|.++           +.+||||.|||+|++||++
T Consensus        71 ~~~w~va~K~LivlH~llreG~~~~~~~l----~~~~~~l~l~~f~D~~~~~~~~~~~~~~~~~~d~s~~Ir~Ya~yL~~  146 (299)
T 1hx8_A           71 NANWVVVYKSLITTHHLMAYGNERFMQYL----ASSNSTFNLSSFLDKGTVQDGGMGVPGGRMGYDMSPFIRRYAKYLNE  146 (299)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHSCHHHHHHH----HHTTCCCCCTTCCCCCC---CCSSCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHhcCCHHHHHHH----HhCCcccchhhhhcccccccccccccccccccchhHHHHHHHHHHHH
Confidence            99999999999999999999999987765    33667999999999865           4578999999999999999


Q ss_pred             HHHHHhhhccccccc-----CCccCCCCHHHHHhhHHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHHHHHHHHHHHH
Q 037435          155 RVECFRILRYDVEKS-----HMGSGRLSIPDLLDQLPSLQQLLFRLLGCKPQGAALYNNLIHYALSIIASESVKLYVSIT  229 (583)
Q Consensus       155 RL~~~r~~~~d~~~~-----~~r~r~l~~e~LL~~L~~LQ~LLdrlL~crP~g~a~~N~lil~Al~llvkDSf~LY~~in  229 (583)
                      |+.+|+..++|+++.     .+++++|+++.||++++.||+||+++++|+|.+.+.+|+|+++||++||+|||+||+++|
T Consensus       147 r~~~f~~~~~d~~~~~~~~~~~~~~~l~~~~lL~~l~~lQ~li~~ll~~~~~~~~~~n~~~~~Al~llv~Ds~~lY~~i~  226 (299)
T 1hx8_A          147 KSLSYRAMAFDFCKVKRGKEEGSLRSMNAEKLLKTLPVLQAQLDALLEFDCQSNDLSNGVINMSFMLLFRDLIRLFACYN  226 (299)
T ss_dssp             HHHHHHHHSSCGGGC-----CCCTTTCCHHHHHHHHHHHHHHHHHHHTTCCCGGGCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCccccccCccccchhhCCHHHHHHHHHHHHHHHHHHHCCCCCcccccchHHHHHHHHHHHHHHHHHHHHH
Confidence            998899999988642     567899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhcCChhhHHHHHHHHHHHHHhHHHHHHHHHHhhhcccccccccccCCCCChhhHHHHHHHHHh
Q 037435          230 DGILKLVDKYFEMPRHDAVRTLEIYRKSESQADSLTSLFEICRELDFGRGQKYIKIEKPPASFMTAMEDYVKV  302 (583)
Q Consensus       230 dgii~LLe~fFeM~k~da~kaLeiYkRf~kQ~e~L~~Fy~~ck~l~~~r~~~iP~L~~~P~~~L~~LEEylrd  302 (583)
                      +||+||||+||+|++.||++||+||+||.+|+++|++||++||++++.+ ++||+|+++|++||++|||||++
T Consensus       227 ~gi~~lLe~~fem~~~d~~~al~iykrf~~q~~~L~~Fy~~c~~~~~~~-~~iP~L~~~p~~ll~~Lee~l~~  298 (299)
T 1hx8_A          227 DGIINLLEKYFDMNKKHARDALDLYKKFLVRMDRVGEFLKVAENVGIDK-GDIPDLTKAPSSLLDALEQHLAT  298 (299)
T ss_dssp             HHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCG-GGSCCCCCCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcCC-CCCCCCCCCCHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999999976 89999999999999999999986
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus} Back     alignment and structure
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A* Back     alignment and structure
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A Back     alignment and structure
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1 Back     alignment and structure
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E Back     alignment and structure
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A Back     alignment and structure
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A Back     alignment and structure
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2 Back     alignment and structure
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0 Back     alignment and structure
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B Back     alignment and structure
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens} Back     alignment and structure
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A* Back     alignment and structure
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A* Back     alignment and structure
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2 Back     alignment and structure
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A* Back     alignment and structure
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 583
d1hf8a1132 a.7.8.2 (A:150-281) Clathrin assembly lymphoid mye 3e-43
d1hx8a1133 a.7.8.2 (A:167-299) AP180 (Lap) {Fruit fly (Drosop 6e-43
d1hx8a2140 a.118.9.3 (A:22-161) AP180 (Lap) {Fruit fly (Droso 4e-40
d1hf8a2131 a.118.9.3 (A:19-149) Clathrin assembly lymphoid my 1e-37
d1eyha_144 a.118.9.1 (A:) Epsin 1 {Rat (Rattus norvegicus) [T 1e-18
>d1hf8a1 a.7.8.2 (A:150-281) Clathrin assembly lymphoid myeloid leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132 Back     information, alignment and structure

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: GAT-like domain
family: Phosphoinositide-binding clathrin adaptor, domain 2
domain: Clathrin assembly lymphoid myeloid leukaemia protein, Calm
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  148 bits (376), Expect = 3e-43
 Identities = 28/125 (22%), Positives = 66/125 (52%), Gaps = 1/125 (0%)

Query: 175 RLSIPDLLDQLPSLQQLLFRLLGCKPQGAALYNNLIHYALSIIASESVKLYVSITDGILK 234
            ++   LL  +P +Q  +  LL        L N +I+ A  ++  ++++L+ +  +GI+ 
Sbjct: 9   TMNTEKLLKTVPIIQNQMDALLDFNVNSNELTNGVINAAFMLLFKDAIRLFAAYNEGIIN 68

Query: 235 LVDKYFEMPRHDAVRTLEIYRKSESQADSLTSLFEICRELDFGRGQKYIKIEKPPASFMT 294
           L++KYF+M ++     L+IY+K  ++   ++   ++  ++   RG     + + P+S + 
Sbjct: 69  LLEKYFDMKKNQCKEGLDIYKKFLTRMTRISEFLKVAEQVGIDRGD-IPDLSQAPSSLLD 127

Query: 295 AMEDY 299
           A+E +
Sbjct: 128 ALEQH 132
>d1hx8a1 a.7.8.2 (A:167-299) AP180 (Lap) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 133 Back     information, alignment and structure
>d1hx8a2 a.118.9.3 (A:22-161) AP180 (Lap) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 140 Back     information, alignment and structure
>d1hf8a2 a.118.9.3 (A:19-149) Clathrin assembly lymphoid myeloid leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131 Back     information, alignment and structure
>d1eyha_ a.118.9.1 (A:) Epsin 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 144 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query583
d1hx8a1133 AP180 (Lap) {Fruit fly (Drosophila melanogaster) [ 100.0
d1hf8a1132 Clathrin assembly lymphoid myeloid leukaemia prote 100.0
d1hx8a2140 AP180 (Lap) {Fruit fly (Drosophila melanogaster) [ 99.97
d1hf8a2131 Clathrin assembly lymphoid myeloid leukaemia prote 99.97
d1eyha_144 Epsin 1 {Rat (Rattus norvegicus) [TaxId: 10116]} 99.82
d1elka_153 Tom1 protein {Human (Homo sapiens) [TaxId: 9606]} 95.39
d1dvpa1145 Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7 95.23
d1ujka_145 ADP-ribosylation factor binding protein Gga1 {Huma 95.13
d1juqa_151 ADP-ribosylation factor binding protein Gga3 {Huma 94.44
d1mhqa_143 ADP-ribosylation factor binding protein Gga2 {Huma 93.69
>d1hx8a1 a.7.8.2 (A:167-299) AP180 (Lap) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
class: All alpha proteins
fold: Spectrin repeat-like
superfamily: GAT-like domain
family: Phosphoinositide-binding clathrin adaptor, domain 2
domain: AP180 (Lap)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=100.00  E-value=2.8e-39  Score=294.83  Aligned_cols=131  Identities=24%  Similarity=0.462  Sum_probs=128.4

Q ss_pred             CccCCCCHHHHHhhHHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHH
Q 037435          171 MGSGRLSIPDLLDQLPSLQQLLFRLLGCKPQGAALYNNLIHYALSIIASESVKLYVSITDGILKLVDKYFEMPRHDAVRT  250 (583)
Q Consensus       171 ~r~r~l~~e~LL~~L~~LQ~LLdrlL~crP~g~a~~N~lil~Al~llvkDSf~LY~~indgii~LLe~fFeM~k~da~ka  250 (583)
                      +++|+|++++||++++++|+||+|+|+|+|.+++.+|+||++||++||+|||+||+.||+|||||||+||+|+++||++|
T Consensus         2 ~~lr~m~~~~LL~~l~~lQ~lld~Ll~c~p~~~~~~n~vi~~A~~llvkds~~lY~~inegiinLLd~fFem~k~da~~a   81 (133)
T d1hx8a1           2 GSLRSMNAEKLLKTLPVLQAQLDALLEFDCQSNDLSNGVINMSFMLLFRDLIRLFACYNDGIINLLEKYFDMNKKHARDA   81 (133)
T ss_dssp             CCTTTCCHHHHHHHHHHHHHHHHHHHTTCCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHH
T ss_pred             chhhcCCHHHHHHHHHHHHHHHHHHHcCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhHHHHHHHHHHhhhcccccccccccCCCCChhhHHHHHHHHHh
Q 037435          251 LEIYRKSESQADSLTSLFEICRELDFGRGQKYIKIEKPPASFMTAMEDYVKV  302 (583)
Q Consensus       251 LeiYkRf~kQ~e~L~~Fy~~ck~l~~~r~~~iP~L~~~P~~~L~~LEEylrd  302 (583)
                      |+|||||.+|+++|+.||+|||++|++| .+||+|+++|+++|++|||||++
T Consensus        82 l~iyk~~~~q~e~L~~f~~~ck~~g~~r-~e~P~l~~~p~sll~~LEe~l~~  132 (133)
T d1hx8a1          82 LDLYKKFLVRMDRVGEFLKVAENVGIDK-GDIPDLTKAPSSLLDALEQHLAT  132 (133)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCCG-GGSCCCCCCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCccc-cCCCCCCCCCHHHHHHHHHHHHh
Confidence            9999999999999999999999999987 69999999999999999999985
>d1hf8a1 a.7.8.2 (A:150-281) Clathrin assembly lymphoid myeloid leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1hx8a2 a.118.9.3 (A:22-161) AP180 (Lap) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1hf8a2 a.118.9.3 (A:19-149) Clathrin assembly lymphoid myeloid leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1eyha_ a.118.9.1 (A:) Epsin 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1elka_ a.118.9.2 (A:) Tom1 protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure