Citrus Sinensis ID: 037485


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------36
MSGSAGAIEDCSAEKKRSLRVRYVYGMIFLMYILLAWLVRDYGQKFLPQLHYVKACGAGGNNCFRMLGVLRVSLGCFIFFFLMFLSTCSTSKVDEIRSNWHSGYWILKSFLLIASMAVPFFLPSDYMQIYGELARVGAGIFLLLQLVSVIEFIVWWNKYWTPDDEKKSCSLGLFMSTIFYVASILGIALMYYLYAPRLACAINIFFITWTAILVLVMMIISLHSLVNRGLLSSGIMASYIVFLCWSALRSEPPYEKCNVQKQVNSNADWTTILSFLIAIGTIVMSTFSTGIDSQSFQFRKDEVQEEDDIPYKYGIFHLIFSLGAMYFAMLFLSWNLLNPAKEWSIDVGWASTWVKILN
ccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccEEHHHHHHHHHHHHHHHHHHHHcccccccccccHHHcccHHHHHHHHHHHHHHcEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHEEEEEEcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEEEEEc
cccccccHccccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHcccHHccccccccHHHEEEEHHHHHHHHHHHHHHHHHHHcccccccHHHHHHccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHcHEEHHHHHHHHHHHHHHHHcHHHHccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccEcHHHHHHHHHHHHHHHHHHHHcccccccccEEEEcccccEEEEEEcc
msgsagaiedcsAEKKRSLRVRYVYGMIFLMYILLAWLVRDygqkflpqlHYVKAcgaggnncFRMLGVLRVSLGCFIFFFLMFLstcstskvdeirsNWHSGYWILKSFLLIASmavpfflpsdyMQIYGELARVGAGIFLLLQLVSVIEFIVWWnkywtpddekkscslglfmSTIFYVASILGIALMYYLYAPRLACAINIFFITWTAILVLVMMIISLHSLVNRGLLSSGIMASYIVFLCWsalrseppyekcnvqkqvnsnaDWTTILSFLIAIGTIVMStfstgidsqsfqfrkdevqeeddipykyGIFHLIFSLGAMYFAMLFLSWnllnpakewsidvgwASTWVKILN
msgsagaiedcsaekkrsLRVRYVYGMIFLMYILLAWLVRDYGQKFLPQLHYVKACGAGGNNCFRMLGVLRVSLGCFIFFFLMFLSTCSTSKVDEIRSNWHSGYWILKSFLLIASMAVPFFLPSDYMQIYGELARVGAGIFLLLQLVSVIEFIVWWNKYWTPDDEKKSCSLGLFMSTIFYVASILGIALMYYLYAPRLACAINIFFITWTAILVLVMMIISLHSLVNRGLLSSGIMASYIVFLCWSALRSEPPYEKCNVQKQVNSNADWTTILSFLIAIGTIVMSTFSTGIDSQSFQFRKDEVQEEDDIPYKYGIFHLIFSLGAMYFAMLFLSWNLLNPAKEWSIDVGWASTWVKILN
MSGSAGAIEDCSAEKKRSLRVRYVYGMIFLMYILLAWLVRDYGQKFLPQLHYVKACGAGGNNCFRMLGVLRVSLGCFIFFFLMFLSTCSTSKVDEIRSNWHSGYWILKSFLLIASMAVPFFLPSDYMQIYGELARVGAGIFLLLQLVSVIEFIVWWNKYWTPDDEKKSCSLGLFMSTIFYVASILGIALMYYLYAPRLACAINIFFITWTAILVLVMMIISLHSLVNRGLLSSGIMASYIVFLCWSALRSEPPYEKCNVQKQVNSNADWTTILSFLIAIGTIVMSTFSTGIDSQSFQFRKDEVQEEDDIPYKYGIFHLIFSLGAMYFAMLFLSWNLLNPAKEWSIDVGWASTWVKILN
*****************SLRVRYVYGMIFLMYILLAWLVRDYGQKFLPQLHYVKACGAGGNNCFRMLGVLRVSLGCFIFFFLMFLSTCSTSKVDEIRSNWHSGYWILKSFLLIASMAVPFFLPSDYMQIYGELARVGAGIFLLLQLVSVIEFIVWWNKYWTPDDEKKSCSLGLFMSTIFYVASILGIALMYYLYAPRLACAINIFFITWTAILVLVMMIISLHSLVNRGLLSSGIMASYIVFLCWSALRSEPPYEKCNVQKQVNSNADWTTILSFLIAIGTIVMSTFSTGIDSQSFQFRKDEVQEEDDIPYKYGIFHLIFSLGAMYFAMLFLSWNLLNPAKEWSIDVGWASTWVKIL*
*SGSAGAIEDCSAEKKRSLRVRYVYGMIFLMYILLAWLVRDYGQKFLPQLHYVKACGAGGNNCFRMLGVLRVSLGCFIFFFLMFLSTCSTSKVDEIRSNWHSGYWILKSFLLIASMAVPFFLPSDYMQIYGELARVGAGIFLLLQLVSVIEFIVWWNKYWTPDDEKKSCSLGLFMSTIFYVASILGIALMYYLYAPRLACAINIFFITWTAILVLVMMIISLHSLVNRGLLSSGIMASYIVFLCWSALRSE***************ADWTTILSFLIAIGTIVMSTFSTG*****************DIPYKYGIFHLIFSLGAMYFAMLFLSWNLLNPAKEWSIDVGWASTWVKILN
*************EKKRSLRVRYVYGMIFLMYILLAWLVRDYGQKFLPQLHYVKACGAGGNNCFRMLGVLRVSLGCFIFFFLMFLSTCSTSKVDEIRSNWHSGYWILKSFLLIASMAVPFFLPSDYMQIYGELARVGAGIFLLLQLVSVIEFIVWWNKYWTPDDEKKSCSLGLFMSTIFYVASILGIALMYYLYAPRLACAINIFFITWTAILVLVMMIISLHSLVNRGLLSSGIMASYIVFLCWSALRSEPPYEKCNVQKQVNSNADWTTILSFLIAIGTIVMSTFSTGIDSQSFQFRKDEVQEEDDIPYKYGIFHLIFSLGAMYFAMLFLSWNLLNPAKEWSIDVGWASTWVKILN
*SGSAGAIEDCSAEKKRSLRVRYVYGMIFLMYILLAWLVRDYGQKFLPQLHYVKACGAGGNNCFRMLGVLRVSLGCFIFFFLMFLSTCSTSKVDEIRSNWHSGYWILKSFLLIASMAVPFFLPSDYMQIYGELARVGAGIFLLLQLVSVIEFIVWWNKYWTPDDEKKSCSLGLFMSTIFYVASILGIALMYYLYAPRLACAINIFFITWTAILVLVMMIISLHSLVNRGLLSSGIMASYIVFLCWSALRSEPPYEKCNVQKQVNSNADWTTILSFLIAIGTIVMSTFST****************EDDIPYKYGIFHLIFSLGAMYFAMLFLSWNLLNPAKEWSIDVGWASTWVKILN
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooo
ooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
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MSGSAGAIEDCSAEKKRSLRVRYVYGMIFLMYILLAWLVRDYGQKFLPQLHYVKACGAGGNNCFRMLGVLRVSLGCFIFFFLMFLSTCSTSKVDEIRSNWHSGYWILKSFLLIASMAVPFFLPSDYMQIYGELARVGAGIFLLLQLVSVIEFIVWWNKYWTPDDEKKSCSLGLFMSTIFYVASILGIALMYYLYAPRLACAINIFFITWTAILVLVMMIISLHSLVNRGLLSSGIMASYIVFLCWSALRSEPPYEKCNVQKQVNSNADWTTILSFLIAIGTIVMSTFSTGIDSQSFQFRKDEVQEEDDIPYKYGIFHLIFSLGAMYFAMLFLSWNLLNPAKEWSIDVGWASTWVKILN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query358 2.2.26 [Sep-21-2011]
Q13530473 Serine incorporator 3 OS= yes no 0.986 0.746 0.250 3e-27
Q5R533473 Serine incorporator 3 OS= yes no 0.986 0.746 0.250 6e-27
Q54UF8417 Probable serine incorpora yes no 0.882 0.757 0.275 1e-24
Q86VE9423 Serine incorporator 5 OS= no no 0.921 0.780 0.260 6e-22
A7S4N4456 Probable serine incorpora N/A no 0.944 0.741 0.244 1e-21
Q8BHJ6461 Serine incorporator 5 OS= yes no 0.977 0.759 0.25 2e-21
A4FUZ5472 Serine incorporator 3 OS= no no 0.977 0.741 0.229 3e-19
Q4R6L9424 Serine incorporator 5 OS= N/A no 0.918 0.775 0.251 4e-19
Q9QZI8453 Serine incorporator 1 OS= no no 0.952 0.752 0.234 3e-18
Q7TNK0453 Serine incorporator 1 OS= yes no 0.952 0.752 0.237 6e-18
>sp|Q13530|SERC3_HUMAN Serine incorporator 3 OS=Homo sapiens GN=SERINC3 PE=2 SV=2 Back     alignment and function desciption
 Score =  122 bits (307), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 108/431 (25%), Positives = 182/431 (42%), Gaps = 78/431 (18%)

Query: 2   SGSAGAIEDCSAEKKRSLRVRYVYGMIFLMYILLAWLV-RDYGQKFLPQLHYVKACG--- 57
           SG++  +  C    K S   R +Y  I L+  ++++++ R   + +L ++      G   
Sbjct: 19  SGASCLLCSCCPNSKNSTVTRLIYAFILLLSTVVSYIMQRKEMETYLKKIPGFCEGGFKI 78

Query: 58  -----AGGNNCFRMLG---VLRVSLGCFIFFFLMFLSTCSTSKVDEIRSNWHSGYWILKS 109
                    +C  ++G   V R+S    IFFF+  L         ++R+  H+G+W  K 
Sbjct: 79  HEADINADKDCDVLVGYKAVYRISFAMAIFFFVFSLLMFKVKTSKDLRAAVHNGFWFFKI 138

Query: 110 FLLIASMAVPFFLPSDYMQ-IYGELARVGAGIFLLLQLVSVIEFIVWWNKYWTPDDEKKS 168
             LI  M   F++P  Y   ++  +  +GA +F+L+QLV +++F   WN+ W    E+ +
Sbjct: 139 AALIGIMVGSFYIPGGYFSSVWFVVGMIGAALFILIQLVLLVDFAHSWNESWVNRMEEGN 198

Query: 169 CSL----GLFMSTIFYVASILGIALMYYLYAPRLACAINIFFITWTAILVLVMMIISLHS 224
             L     L  ++ FY+ SI+ + L+Y  Y     C  N FFI+   IL +V  IIS+H 
Sbjct: 199 PRLWYAALLSFTSAFYILSIICVGLLYTYYTKPDGCTENKFFISINLILCVVASIISIHP 258

Query: 225 LVNR-----GLLSSGIMASYIVFLCWSALRSEPPYEKCNVQ-------------KQVNSN 266
            +       GLL S ++  Y ++L WSA+ +EP    CN                  NS 
Sbjct: 259 KIQEHQPRSGLLQSSLITLYTMYLTWSAMSNEPD-RSCNPNLMSFITRITAPTLAPGNST 317

Query: 267 A---------------DWTTILSFLIAIGTIVMSTFSTGIDSQ----------------- 294
           A               D    +   + +  ++ S+  T  +SQ                 
Sbjct: 318 AVVPTPTPPSKSGSLLDSDNFIGLFVFVLCLLYSSIRTSTNSQVDKLTLSGSDSVILGDT 377

Query: 295 ---------SFQFRKDEVQEEDDIPYKYGIFHLIFSLGAMYFAMLFLSWNLLNPAKEWSI 345
                      Q R+    E++ + Y Y +FHL+  L ++Y  M   SW   + AK  S+
Sbjct: 378 TTSGASDEEDGQPRRAVDNEKEGVQYSYSLFHLMLCLASLYIMMTLTSWYSPD-AKFQSM 436

Query: 346 DVGWASTWVKI 356
              W + WVKI
Sbjct: 437 TSKWPAVWVKI 447




May be involved in cellular transformation.
Homo sapiens (taxid: 9606)
>sp|Q5R533|SERC3_PONAB Serine incorporator 3 OS=Pongo abelii GN=SERINC3 PE=2 SV=1 Back     alignment and function description
>sp|Q54UF8|SERIC_DICDI Probable serine incorporator OS=Dictyostelium discoideum GN=serinc PE=3 SV=1 Back     alignment and function description
>sp|Q86VE9|SERC5_HUMAN Serine incorporator 5 OS=Homo sapiens GN=SERINC5 PE=2 SV=1 Back     alignment and function description
>sp|A7S4N4|SERIC_NEMVE Probable serine incorporator OS=Nematostella vectensis GN=serinc PE=3 SV=1 Back     alignment and function description
>sp|Q8BHJ6|SERC5_MOUSE Serine incorporator 5 OS=Mus musculus GN=Serinc5 PE=2 SV=1 Back     alignment and function description
>sp|A4FUZ5|SERC3_BOVIN Serine incorporator 3 OS=Bos taurus GN=SERINC3 PE=2 SV=1 Back     alignment and function description
>sp|Q4R6L9|SERC5_MACFA Serine incorporator 5 OS=Macaca fascicularis GN=SERINC5 PE=2 SV=1 Back     alignment and function description
>sp|Q9QZI8|SERC1_MOUSE Serine incorporator 1 OS=Mus musculus GN=Serinc1 PE=1 SV=1 Back     alignment and function description
>sp|Q7TNK0|SERC1_RAT Serine incorporator 1 OS=Rattus norvegicus GN=Serinc1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query358
359477835 496 PREDICTED: serine incorporator 3-like [V 0.974 0.703 0.725 1e-151
297741897402 unnamed protein product [Vitis vinifera] 0.974 0.868 0.725 1e-151
449433205441 PREDICTED: serine incorporator 3-like [C 0.974 0.791 0.711 1e-146
240254570422 Serinc-domain containing serine and sphi 0.960 0.815 0.682 1e-136
224072610383 predicted protein [Populus trichocarpa] 0.949 0.887 0.640 1e-126
255554258 588 conserved hypothetical protein [Ricinus 0.891 0.542 0.628 1e-125
356577580 471 PREDICTED: serine incorporator 3-like [G 0.958 0.728 0.626 1e-122
297826769425 TMS membrane family protein [Arabidopsis 0.960 0.809 0.638 1e-120
326526093398 predicted protein [Hordeum vulgare subsp 0.980 0.881 0.584 1e-120
242076400401 hypothetical protein SORBIDRAFT_06g02192 0.986 0.880 0.605 1e-120
>gi|359477835|ref|XP_002282954.2| PREDICTED: serine incorporator 3-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  541 bits (1395), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 254/350 (72%), Positives = 297/350 (84%), Gaps = 1/350 (0%)

Query: 10  DCSAEKKRSLRVRYVYGMIFLMYILLAWLVRDYGQKFLPQLHYVKACGAGGNNCFRMLGV 69
           +CS E+K+SL+ RY YG+IFL+  L AW +RDYGQK  PQL Y+++CG  G +CF  +GV
Sbjct: 109 ECSVERKKSLQARYSYGIIFLLTNLSAWFIRDYGQKVFPQLQYLESCGIEGRDCFHTMGV 168

Query: 70  LRVSLGCFIFFFLMFLSTCSTSKVDEIRSNWHSGYWILKSFLLIASMAVPFFLPSDYMQI 129
           LRVSLGCFIFF LMFL+T  TSK+DE  S WHS +W LK  LLI S+ VPFF PSD++  
Sbjct: 169 LRVSLGCFIFFLLMFLTTFKTSKLDEASSEWHSRWWKLKFILLIVSLTVPFFFPSDFIHF 228

Query: 130 YGELARVGAGIFLLLQLVSVIEFIVWWNKYWTPDDEKK-SCSLGLFMSTIFYVASILGIA 188
           YGELARVGAGIFL+LQL+SVI+FI WWN YW PD+++K SC LGLFMST+FY+AS+ GI 
Sbjct: 229 YGELARVGAGIFLVLQLISVIQFITWWNNYWMPDEKRKPSCFLGLFMSTLFYIASMCGIV 288

Query: 189 LMYYLYAPRLACAINIFFITWTAILVLVMMIISLHSLVNRGLLSSGIMASYIVFLCWSAL 248
           LMY LYAPR +C++NIFFITWTAIL++VMM +SLHS VNRGLLSSGIMASYIVFLCWSA+
Sbjct: 289 LMYSLYAPRTSCSLNIFFITWTAILLVVMMAMSLHSKVNRGLLSSGIMASYIVFLCWSAI 348

Query: 249 RSEPPYEKCNVQKQVNSNADWTTILSFLIAIGTIVMSTFSTGIDSQSFQFRKDEVQEEDD 308
           RSEP  E CN QKQ  SNADW T+LSFLIAI  IVM+TFSTGIDSQSFQFRKDEVQEEDD
Sbjct: 349 RSEPATENCNAQKQEKSNADWITVLSFLIAICAIVMATFSTGIDSQSFQFRKDEVQEEDD 408

Query: 309 IPYKYGIFHLIFSLGAMYFAMLFLSWNLLNPAKEWSIDVGWASTWVKILN 358
           IPYKYG FH+IFSLGAMYFAMLF+SWNL + A++WSID+GWASTWVKI+N
Sbjct: 409 IPYKYGFFHMIFSLGAMYFAMLFISWNLDSSARKWSIDIGWASTWVKIVN 458




Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741897|emb|CBI33332.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449433205|ref|XP_004134388.1| PREDICTED: serine incorporator 3-like [Cucumis sativus] gi|449487606|ref|XP_004157710.1| PREDICTED: serine incorporator 3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|240254570|ref|NP_850202.4| Serinc-domain containing serine and sphingolipid biosynthesis protein [Arabidopsis thaliana] gi|330253704|gb|AEC08798.1| Serinc-domain containing serine and sphingolipid biosynthesis protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224072610|ref|XP_002303805.1| predicted protein [Populus trichocarpa] gi|222841237|gb|EEE78784.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255554258|ref|XP_002518169.1| conserved hypothetical protein [Ricinus communis] gi|223542765|gb|EEF44302.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|356577580|ref|XP_003556902.1| PREDICTED: serine incorporator 3-like [Glycine max] Back     alignment and taxonomy information
>gi|297826769|ref|XP_002881267.1| TMS membrane family protein [Arabidopsis lyrata subsp. lyrata] gi|297327106|gb|EFH57526.1| TMS membrane family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|326526093|dbj|BAJ93223.1| predicted protein [Hordeum vulgare subsp. vulgare] Back     alignment and taxonomy information
>gi|242076400|ref|XP_002448136.1| hypothetical protein SORBIDRAFT_06g021920 [Sorghum bicolor] gi|241939319|gb|EES12464.1| hypothetical protein SORBIDRAFT_06g021920 [Sorghum bicolor] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query358
TAIR|locus:504956041422 AT2G33205 "AT2G33205" [Arabido 0.960 0.815 0.682 8.1e-131
TAIR|locus:505006454394 MEE55 "maternal effect embryo 0.938 0.852 0.517 1.7e-98
TAIR|locus:2094869409 AT3G24460 [Arabidopsis thalian 0.938 0.821 0.517 1.4e-96
TAIR|locus:2082415409 AT3G06170 [Arabidopsis thalian 0.784 0.687 0.310 5.3e-47
TAIR|locus:2200507412 AT1G16180 "AT1G16180" [Arabido 0.773 0.672 0.280 2.3e-44
UNIPROTKB|B4DUE9418 SERINC3 "cDNA FLJ50869, highly 0.527 0.452 0.325 2.1e-35
UNIPROTKB|Q13530473 SERINC3 "Serine incorporator 3 0.527 0.399 0.325 1.4e-34
UNIPROTKB|A4FUZ5472 SERINC3 "Serine incorporator 3 0.539 0.408 0.294 1.1e-30
UNIPROTKB|F1NBW3451 SERINC5 "Uncharacterized prote 0.673 0.534 0.282 1.4e-30
UNIPROTKB|E2QZM0461 SERINC5 "Uncharacterized prote 0.695 0.540 0.281 1.9e-29
TAIR|locus:504956041 AT2G33205 "AT2G33205" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1283 (456.7 bits), Expect = 8.1e-131, P = 8.1e-131
 Identities = 237/347 (68%), Positives = 278/347 (80%)

Query:    14 EKKRSLRVRYVYGMIFLMYILLAWLVRDYGQKFLPQLHYVKACGAGGNNCFRMLGVLRVS 73
             EK +SLR RY YG IFL+  L AW +RDY QK L  L YV +CG  G+ CF  LGVLRVS
Sbjct:    42 EKNKSLRARYTYGTIFLIINLCAWFIRDYAQKALALLPYVSSCGPEGSRCFHTLGVLRVS 101

Query:    74 LGCFIFFFLMFLSTCSTSKVDEIRSNWHSGYWILKSFLLIASMAVPFFLPSDYMQIYGEL 133
             LGCFIF+F+MFLST +T K+ E +++WHS  WI K FLL+  M   FF+P  Y+QIYGE+
Sbjct:   102 LGCFIFYFVMFLSTWNTMKLHEAQNSWHSDNWIFKFFLLVIVMVASFFIPQLYIQIYGEI 161

Query:   134 ARVGAGIFLLLQLVSVIEFIVWWNKYWTPDDE-KKSCSLGLFMSTIFYVASILGIALMYY 192
             ARVGAGIFL LQLVSVIEFI WWN YW P ++ K+SCS GL MS +FY+ S+ GIA+MYY
Sbjct:   162 ARVGAGIFLGLQLVSVIEFITWWNNYWMPQNQSKQSCSFGLVMSIVFYIGSVCGIAVMYY 221

Query:   193 LYAPRLACAINIFFITWTAILVLVMMIISLHSLV-NRGLLSSGIMASYIVFLCWSALRSE 251
              Y    AC +NIFFI+WT IL++VMM+ISLHS V NRGLLSSGIMASYIVFLCWSA+RSE
Sbjct:   222 FYGASTACGLNIFFISWTVILLIVMMVISLHSKVKNRGLLSSGIMASYIVFLCWSAIRSE 281

Query:   252 PPYEKCNVQKQVNSNADWTTILSFLIAIGTIVMSTFSTGIDSQSFQFRKDEVQEEDDIPY 311
             P + KCN   Q NS+ DWTTILSFLIAIG IVM+TFSTGIDS+SF+FRKDE +EEDDIPY
Sbjct:   282 PSHTKCNAHTQ-NSHTDWTTILSFLIAIGAIVMATFSTGIDSESFRFRKDEAKEEDDIPY 340

Query:   312 KYGIFHLIFSLGAMYFAMLFLSWNLLNPAKEWSIDVGWASTWVKILN 358
              YG FHL+FSLGAMYFAMLF+SWNL +  ++WSIDVGW STWVKI+N
Sbjct:   341 SYGFFHLVFSLGAMYFAMLFISWNLSHSTEKWSIDVGWTSTWVKIVN 387




GO:0003674 "molecular_function" evidence=ND
GO:0008150 "biological_process" evidence=ND
GO:0016020 "membrane" evidence=IEA;ISS
TAIR|locus:505006454 MEE55 "maternal effect embryo arrest 55" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2094869 AT3G24460 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082415 AT3G06170 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200507 AT1G16180 "AT1G16180" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|B4DUE9 SERINC3 "cDNA FLJ50869, highly similar to Serine incorporator 3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q13530 SERINC3 "Serine incorporator 3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|A4FUZ5 SERINC3 "Serine incorporator 3" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1NBW3 SERINC5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E2QZM0 SERINC5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query358
pfam03348428 pfam03348, Serinc, Serine incorporator (Serinc) 6e-52
>gnl|CDD|217505 pfam03348, Serinc, Serine incorporator (Serinc) Back     alignment and domain information
 Score =  177 bits (452), Expect = 6e-52
 Identities = 102/403 (25%), Positives = 171/403 (42%), Gaps = 53/403 (13%)

Query: 3   GSAGAIEDCSA--EKKRSLRVRYVYGMIFLMYILLAWLVRDYG--QKFLPQLHYVKACGA 58
           GSA     CS     K S   R  Y +I L+  +++W++   G  +K   ++        
Sbjct: 5   GSAACSLCCSCCPSIKNSTSTRIAYALILLLNSIVSWIMLSPGVIKKLKKKIPGFCGVDC 64

Query: 59  GGNNCFRMLGVLRVSLGCFIFFFLM--FLSTCSTSKVDEIRSNWHSGYWILKSFLLIASM 116
             + C     V RV     +FF ++   +    +SK  + R+   +G+W  K  LLI  +
Sbjct: 65  PDSECVGYSAVYRVCFALALFFLILALLMLGVKSSK--DPRAAIQNGFWFFKILLLIGLI 122

Query: 117 AVPFFLP-SDYMQIYGELARVGAGIFLLLQLVSVIEFIVWWNKYWTPDDEKKSCSL---G 172
              FF+P   +  ++  +  +G+ +F+L+QL+ +++F   W + W    E  +  L    
Sbjct: 123 VGAFFIPNGFFFFVWMYIGVIGSFLFILIQLILLVDFAHSWAESWVEKYEDGNSRLWYAA 182

Query: 173 LFMST-IFYVASILGIALMYYLYAPRLACAINIFFITWTAILVLVMMIISLHSLV----- 226
           L   T + Y+ SI    L+Y  +     C +N FFI+   IL +++ I+S+H  V     
Sbjct: 183 LLGVTLLMYILSIALTVLLYIFFTHGDGCGMNKFFISINLILCVIVSIVSIHPKVQEANP 242

Query: 227 NRGLLSSGIMASYIVFLCWSALRSEPPYEKCNVQKQVNSNADWTTILSFLIAIGTIVMST 286
             GLL + +++ Y  +L WSAL SEP  E CN   +       + I+  L+    I+ ST
Sbjct: 243 RSGLLQASVISLYCTYLTWSALSSEPDKE-CNPLVRSKGTRTASIIIGALLTFLCILYST 301

Query: 287 FSTGIDSQSF---------------QFRKDEVQ------------------EEDDIPYKY 313
                +SQ                    +   +                  E+D + Y Y
Sbjct: 302 TRAASNSQVGKLQLSSDLVTEQPSQSRNESRAEALRAAVEEGSLPKSAQDDEKDGVTYSY 361

Query: 314 GIFHLIFSLGAMYFAMLFLSWNLLNPAKEWSIDVGWASTWVKI 356
             FH IF L ++Y  ML  +W     A   ++   WA+ WVKI
Sbjct: 362 SFFHFIFFLASLYVMMLLTNW-YSPDADFKTVGSTWAAVWVKI 403


This is a family of eukaryotic membrane proteins which incorporate serine into membranes and facilitate the synthesis of the serine-derived lipids phosphatidylserine and sphingolipid. Members of this family contain 11 transmembrane domains and form intracellular complexes with key enzymes involved in serine and sphingolipid biosynthesis. Length = 428

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 358
KOG2592426 consensus Tumor differentially expressed (TDE) pro 100.0
PF03348429 Serinc: Serine incorporator (Serinc); InterPro: IP 100.0
PF08426412 ICE2: ICE2; InterPro: IPR013635 ICE2 is a fungal E 95.72
>KOG2592 consensus Tumor differentially expressed (TDE) protein [Function unknown] Back     alignment and domain information
Probab=100.00  E-value=1.7e-108  Score=798.65  Aligned_cols=350  Identities=28%  Similarity=0.570  Sum_probs=315.7

Q ss_pred             CcccccccccccCcchhHHHHHHHHHHHHHHHHHHhcccc-cccccCCCcccccCC-CCCCccceehhhhhhhhHHHHHH
Q 037485            4 SAGAIEDCSAEKKRSLRVRYVYGMIFLMYILLAWLVRDYG-QKFLPQLHYVKACGA-GGNNCFRMLGVLRVSLGCFIFFF   81 (358)
Q Consensus         4 ~~~~~~~~~~~~~~s~~tR~~Y~~~fll~~ils~i~~~~~-~~~l~~~~~~~~C~~-~~~~C~G~~aVyRvsfal~~Ff~   81 (358)
                      .+-.|+.|..+.+||+.||++|+++++++++++|+|+ ++ +++++|.|+.  |+. +.+.|.|+.||||+|||+++||+
T Consensus        14 ~acl~cs~cps~~nst~tRl~ya~~l~l~~~vs~i~~-~~~~~~l~k~p~~--c~~~~c~~~~gy~AVyR~~f~~a~Ff~   90 (426)
T KOG2592|consen   14 AACLLCSCCPSLTNSTVTRLIYAFILLLGTLVSWIML-PGAEKQLNKLPWF--CEGNDCGKLLGYKAVYRLCFGLACFFL   90 (426)
T ss_pred             hHHHHHhhCCCCCchhHHHHHHHHHHHHHHHHHHHhh-hhHHHHHhhCCcc--ccCCCcccchhhhHHHHHHHHHHHHHH
Confidence            3334566667788889999999999999999999999 55 6699999987  652 23456899999999999999999


Q ss_pred             HHHHHhcccCCccccchhhcccchhHHHHHHHHHhhheeeccch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 037485           82 LMFLSTCSTSKVDEIRSNWHSGYWILKSFLLIASMAVPFFLPSD-YMQIYGELARVGAGIFLLLQLVSVIEFIVWWNKYW  160 (358)
Q Consensus        82 l~~l~~i~v~~s~d~R~~ihnG~W~~K~l~~~~l~i~~FfIP~~-f~~~y~~i~~~gs~~FiliQlIlLvDFa~~wne~w  160 (358)
                      +++++|+|||++||+|++||||||++|+++|+++.+++|||||+ +...|.+++++||++|||+||||||||||+|||+|
T Consensus        91 ~lsllm~gVkss~D~R~~iqng~W~fK~i~~~~l~i~~FfIP~~~~~~~~~~v~~~Ga~~FILvqLvLLvDFaH~w~e~w  170 (426)
T KOG2592|consen   91 LLSLLMIGVKSSKDPRAAIQNGFWFFKFILWFGLIVGSFFIPNGFFISFWFYVSVFGAALFILVQLVLLVDFAHSWNESW  170 (426)
T ss_pred             HHHHHHHhcCcCCCHHHHHHcCcHHHHHHHHHHHHHheEEcCCccchhHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHH
Confidence            99999999999999999999999999999999999999999997 57799999999999999999999999999999999


Q ss_pred             ccC-C-CcchhHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCchhHHHHHHHHHHHHHHHHHhhccccc-----ccccch
Q 037485          161 TPD-D-EKKSCSLGLFMSTIFYVASILGIALMYYLYAPRLACAINIFFITWTAILVLVMMIISLHSLVN-----RGLLSS  233 (358)
Q Consensus       161 ~~~-~-~~~w~~~L~~~t~~~y~~si~~~v~my~~f~~~~~C~lN~~~it~nlil~vi~s~lSl~p~v~-----~gLLqs  233 (358)
                      ++| | ++.||++|+++|+++|.++++++++||++|++++||++||+||++|+++|++++++|+||++|     +|||||
T Consensus       171 v~~~Edsr~wy~~Ll~~T~~~Y~~s~~~~~l~fv~ft~~~~C~~nk~fi~~nlilcv~~si~sv~P~VQe~~P~SGLlQS  250 (426)
T KOG2592|consen  171 VEKVEDSRFWYAALLGVTLLMYLLSLVATVLLFVYFTPGDGCGENKFFISVNLILCVAISILSVHPKVQEGQPRSGLLQS  250 (426)
T ss_pred             HHHhhchhHHHHHHHHHHHHHHHHHHHHHHHhheEecCCCCCCcceEEEeechHHHHHHHHHhcChhhhcCCCCcccchh
Confidence            999 4 567999999999999999999999999999999999999999999999999999999999987     799999


Q ss_pred             hHHHHHHHHHHHHHhhcCCCCCCCCCccccC-------------CCCchHHHHHHHHHHHHHHhhccccccccccc----
Q 037485          234 GIMASYIVFLCWSALRSEPPYEKCNVQKQVN-------------SNADWTTILSFLIAIGTIVMSTFSTGIDSQSF----  296 (358)
Q Consensus       234 svv~~Y~~yL~~SAlss~P~~~~Cnp~~~~~-------------~~~~~~~iig~~~~~~~v~ys~~~a~~~~~~~----  296 (358)
                      |+|++|+||||||||+||| |++|||...+.             ...+.+.++|+++++++++|++.|++++++..    
T Consensus       251 svIs~Y~~YLt~SAlss~P-e~~CNP~~~~~~~~t~~~~~~~~~~~~~~~~iiGli~~~lcilYsalR~~s~~~l~k~~~  329 (426)
T KOG2592|consen  251 SVISLYTMYLTWSALSSEP-ENGCNPWLNSSKNVTITVGPGASVSTFDATNIIGLIFLLLCILYSALRASSRTQLRKLTR  329 (426)
T ss_pred             HHHHHHHHHHHHHHHhcCC-ccccChhhhcccccccccCcccccccccccchHHHHHHHHHHHHHHhhcccccccccccc
Confidence            9999999999999999999 99999975432             12345779999999999999999998887653    


Q ss_pred             --------c--cC--CcccccCCCcccchhHHHHHHHHHHHHHHHHhccCCCCCCCCccccccCceeEEEEeeC
Q 037485          297 --------Q--FR--KDEVQEEDDIPYKYGIFHLIFSLGAMYFAMLFLSWNLLNPAKEWSIDVGWASTWVKILN  358 (358)
Q Consensus       297 --------~--~~--~~~d~e~~~v~Y~YsfFH~if~Las~Y~aMllTnW~~~~~~~~~~~~~gw~s~WVKi~s  358 (358)
                              .  +.  |+.|||+|+|.|+|+|||++|+|||+|+||+||||++|+++ .+.++.+|+++||||+|
T Consensus       330 ~~~e~~~l~~~dG~~~~~d~Ek~GV~YsYsfFHfvf~LASlyvmmtLTnW~~~~~~-~~~v~~~w~~vWVKI~s  402 (426)
T KOG2592|consen  330 SNEEEPLLPDEDGGGRANDNEKDGVTYSYSFFHFVFVLASLYVMMTLTNWYTPDED-IWFVKSSWASVWVKIVS  402 (426)
T ss_pred             ccccccCccCCCCCcccccccCCCeeEeeeHHHHHHHHHHHHHHHHhccccCCCCc-eeEEeccchHHHHHHHH
Confidence                    0  11  23567888999999999999999999999999999999843 37899999999999975



>PF03348 Serinc: Serine incorporator (Serinc); InterPro: IPR005016 This is a family of proteins which display differential expression in various tumour and cell lines Back     alignment and domain information
>PF08426 ICE2: ICE2; InterPro: IPR013635 ICE2 is a fungal ER protein which has been shown to play an important role in forming/maintaining the cortical ER [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00