Citrus Sinensis ID: 037494

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390----
Protein Sequence
NYVQGEAILTVWRQIYSVMELPFHLKVYCIYLCVFCPSIEISTRQLCQLWIAEGFIPYNSEETAEYYLKELIHRGFIQVSKRRAGGTIKACYVPSLVYYSLLLVAEKTRFVLMPNKEEESLATVKRCFILEDLIEFISLEQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMPAGYIDHSPEGIWMMQKLMHLNFDSITLPAPPKNYSSSLKNLIFISALHPSSCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFGRKLACVGSGGFPELQVLT
Secondary Structure (PSIPRED)
cccccccHHHHcccccccccccccHHHHHHHcccccccccccHHHHHHHHHHHcccccccccHHHHHHHHHHccccEEEEEcccccEEcEEEccHHHHHHHHHHHHHHccEEEccccccccccEEEEEEEcccccccccccccccEEEEEEEccccccccccccccccccccEEEEEEEccccccccccccccccccccccccccccccccHHccccccccEEEccccccccccHHHHccccccEEEEccccccccccccccccccccEEEEEccccccHHHccccccccEEEEEccccccHHHHHHHHcccccccEEEEEEcccccccccccccccccccEEEEEEEEcccccHHHHcccccccEEEEEEEEEcccEEEEEcccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHHcHHHcccccHHHEEEEEcccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcEEEEEEccccccEEEEEHHHHHHHHHHHHHHHHcEEEEEcccccccccEEEEEEEEccccccccccccccEEEEEEEccccccccHHHHHHHHHcccEEEEEEccccccccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHEEcccccccHHccHHHHHHHHHHHEEccccccccccccccccHHHHHHcEEEccccHHHHHHHHHHHHHEEEEEccccccHHHHHHHHHHcHcccEEEEEcccccccccccHcccccccEEEEEEEcccccccHHHHHHcccccEEEEEEccccccEEEEEcccccHcHHccc
Coil and Loop (DISEMBL)
NYVQGEAILTVWRQIYSVMELPFHLKVYCIYLCVFCPSIEISTRQLCQLWIaegfipynseeTAEYYLKELIHRGFIQVSkrraggtikacyvPSLVYYSLLLVAEKtrfvlmpnkeeeslaTVKRCFILEDLIEFISLEQSDMYLQSFLnhssesdhlaLIDCENFCENFKYLRVLNwgsavldqfppgleNLFLLKYLQlniptlkclpLLICTLlnletlempagyidhspeGIWMMQKLMHLnfdsitlpappknysssLKNLIFIsalhpssctpdilsrlptvqtlrisgdlshyhsgvskslcelhkleclklvngsklsrmvlseyqfppsliqlslsntelmedpmpmlerlprlQVMKLkrnsyfgrklacvgsggfpelqvlt
Flexible Loop (DISEMBL)
nyvqgeaiLTVWRQIYSVMELPFHLKVYCIYLCVFCPSIEISTRQLCQLWIAEGFIPYNSEETAEYYLKELIHRGFIQVSKRRAGGTIKACYVPSLVYYSLLLVAEKTRFvlmpnkeeeslatvkrCFILEDLIEFISLEQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMPAGYIDHSPEGIWMMQKLMHLNFDSITLPAPPKNYSSSLKNLIFISALHPSSCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFGRKlacvgsggfpelqvlt
Low Complexity Region (SEG)
NYVQGEAILTVWRQIYSVMELPFHLKVYCIYLCVFCPSIEISTRQLCQLWIAEGFIPYNSEETAEYYLKELIHRGFIQVSKRRAGGTIKACYVPslvyyslllvAEKTRFVLMPNKEEESLATVKRCFILEDLIEFISLEQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNiptlkclpllictllnletleMPAGYIDHSPEGIWMMQKLMHLNFDSITLPAPPKNYSSSLKNLIFISALHPSSCTPDILSRLPTVQTLRISGDLSHYHSGVSKSlcelhkleclklVNGSKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFGRKLACVGSGGFPELQVLT
Disordered region (IsUnstruct)
****GEAILTVWRQIYSVMELPFHLKVYCIYLCVFCPSIEISTRQLCQLWIAEGFIPYNSEETAEYYLKELIHRGFIQVSKRRAGGTIKACYVPSLVYYSLLLVAEKTRFVLMPNKEEESLATVKRCFILEDLIEFISLEQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMPAGYIDHSPEGIWMMQKLMHLNFDSITLPAPPKNYSSSLKNLIFISALHPSSCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVLSEYQFPPSLIQLSL**************RLPRLQVMKLKRNSYFGRKLACVGSGGF*******
Disordered Region (DISOPRED)
NY**GEAILTVWRQIYSVMELPFHLKVYCIYLCVFCPSIEISTRQLCQLWIAEGFIPYNSEETAEYYLKELIHRGFIQVSKRRAGGTIKACYVPSLVYYSLLLVAEKTRFVLMPNKEE********C**LEDL****S****DMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMPAGYIDHSPEGIWMMQKLMHLNFDSIT**********SLKNLIFISALHPSSCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFGRKLACVGSGGFPELQVLT
Disordered Region (DISEMBL)
NYVQGEAILTVWRQIYSVMELPFHLKVYCIYLCVFCPSIEISTRQLCQLWIAEGFIPYNSEETAEYYLKELIHRGFIQVSKRRAGGTIKACYVPSLVYYSLLLVAEKTRFVLMPNKEEESLATVKRCFILEDLIEFISLEQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMPAGYIDHSPEGIWMMQKLMHLNFDSITLPAPPKNYSSSLKNLIFISALHPSSCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFGRKLACVGSGGFPELQVLT
Disordered Region (DISPRO)
****GEAILTVWRQIYSVMELPFHLKVYCIYLCVFCPSIEISTRQLCQLWIAEGFIPYNSEETAEYYLKELIHRGFIQVSKRRAGGTIKACYVPSLVYYSLLLVAEKTRFVLMPNKEEESLATVKRCFILEDLIEFISLEQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMPAGYIDHSPEGIWMMQKLMHLNFDSITLPAPPKNYSSSLKNLIFISALHPSSCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFGRKLACVGSGGFPEL**L*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
NYVQGEAILTVWRQIYSVMELPFHLKVYCIYLCVFCPSIEISTRQLCQLWIAEGFIPYNSEETAEYYLKELIHRGFIQVSKRRAGGTIKACYVPSLVYYSLLLVAEKTRFVLMPNKEEESLATVKRCFILEDLIEFISLEQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMPAGYIDHSPEGIWMMQKLMHLNFDSITLPAPPKNYSSSLKNLIFISALHPSSCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFGRKLACVGSGGFPELQVLT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	394	2.2.26 [Sep-21-2011]
Q9M667	835	Disease resistance protei	yes	no	0.921	0.434	0.272	2e-17
Q9FJK8	908	Probable disease resistan	no	no	0.911	0.395	0.255	9e-15
Q8W4J9	908	Disease resistance protei	no	no	0.931	0.404	0.252	1e-14
Q9XIF0	906	Putative disease resistan	no	no	0.921	0.400	0.283	3e-14
P0DI18	1049	Probable disease resistan	no	no	0.906	0.340	0.237	1e-13
P0DI17	1049	Probable disease resistan	no	no	0.906	0.340	0.237	1e-13
P59584	910	Disease resistance protei	no	no	0.939	0.406	0.242	1e-13
Q6L3Z7	1317	Putative late blight resi	N/A	no	0.893	0.267	0.285	2e-13
Q9STE7	847	Putative disease resistan	no	no	0.961	0.447	0.247	2e-13
Q6L3X3	1202	Putative late blight resi	N/A	no	0.865	0.283	0.264	2e-13

>sp|Q9M667|RPP13_ARATH Disease resistance protein RPP13 OS=Arabidopsis thaliana GN=RPP13 PE=2 SV=2

 Score = 90.5 bits (223), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 107/393 (27%), Positives = 175/393 (44%), Gaps = 30/393 (7%)

Query: 17  SVMELPFHLKVYCIYLCVFCPSIEISTRQLCQLWIAEGFIPYNSE----ETAEYYLKELI 72
           S  EL    K+  +YL +F    EI   +L  L +AEGFI  + E    + A YY++ELI
Sbjct: 409 SFKELRHESKLCFLYLSIFPEDYEIDLEKLIHLLVAEGFIQGDEEMMMEDVARYYIEELI 468

Query: 73  HRGFIQVSKRRAGGTIKACYVPSLVYYSLLLVAEKTRFVLMPNKE--EESLATVKRCFIL 130
            R  ++ + RR  G + +C +  L+    +  +++  FV + N    + S  T +R  + 
Sbjct: 469 DRSLLE-AVRRERGKVMSCRIHDLLRDVAIKKSKELNFVNVYNDHVAQHSSTTCRREVVH 527

Query: 131 EDLIEFISLEQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPG 190
                + S ++ +  ++SFL +  E DHL  +D E      K LRVL++GS  L     G
Sbjct: 528 HQFKRYSSEKRKNKRMRSFL-YFGEFDHLVGLDFETL----KLLRVLDFGSLWLPFKING 582

Query: 191 LENLFLLKYLQLNIPTLKCLPL--LICTLLNLETLEMPAGYIDHSPEGIWMMQKLMHL-- 246
             +L  L+YL ++  ++    +  +I  L  L+TL +   Y       +  +  L H+  
Sbjct: 583 --DLIHLRYLGIDGNSINDFDIAAIISKLRFLQTLFVSDNYFIEETIDLRKLTSLRHVIG 640

Query: 247 NFDSITLPAPPKNYSSSLKNLIFISALHPSSCTPDILSRLPTVQTLRISGDLSHYHSGVS 306
           NF    L     N    L+ L  IS    +   P++L  L  +    +S           
Sbjct: 641 NFFGGLLIGDVAN----LQTLTSISFDSWNKLKPELLINLRDLGISEMSRSKERRVHVSW 696

Query: 307 KSLCELHKLECLKLVNGSKLSRMVLSEYQ------FPPSLIQLSLSNTELMEDPMPMLER 360
            SL +L  L  LKL   +++   + SE           SL  ++L      EDPMP L++
Sbjct: 697 ASLTKLESLRVLKLATPTEVHLSLESEEAVRSMDVISRSLESVTLVGITFEEDPMPFLQK 756

Query: 361 LPRLQVMKLKRNSYFGRKLACVGSGGFPELQVL 393
           +PRL+ + L   +Y G+    V   GF  L+ L
Sbjct: 757 MPRLEDLILLSCNYSGK--MSVSEQGFGRLRKL 787

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. In contrast to other resistance proteins, it works independently of ESD1 and NSD1 proteins and does not require the accumulation of salicylic acid, suggesting the existence of an independent signaling pathway. The specificity to avirulence proteins differs in the different cultivars.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJK8|RP8L4_ARATH Probable disease resistance RPP8-like protein 4 OS=Arabidopsis thaliana GN=RPP8L4 PE=2 SV=1

 Score = 81.6 bits (200), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 108/422 (25%), Positives = 182/422 (43%), Gaps = 63/422 (14%)

Query: 17  SVMELPFHLKVYCIYLCVFCPSIEISTRQLCQLWIAEGFIPYNS-EETAEYYLKELIHRG 75
           S  +LP HLK   +YL  F    +I T+ L   W AEG    ++ +++ EYYL+EL+ R 
Sbjct: 415 SYEDLPTHLKHRFLYLAHFPEDSKIYTQDLFNYWAAEGIYDGSTIQDSGEYYLEELVRRN 474

Query: 76  FIQVSKRRAGGTIKACYVPSLVYYSLLLVAEKTRFVLMPNKEEESLATVK-------RCF 128
            +    R        C +  ++    L  A++  F L   K+  S +T+        R F
Sbjct: 475 LVIADNRYLSLEFNFCQMHDMMREVCLSKAKEENF-LQIIKDPTSTSTINAQSPSRSRRF 533

Query: 129 ILEDLIEF-ISLEQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLD-- 185
            +     F I   +++  ++S +    E D    I   +   N   LRVL+      +  
Sbjct: 534 SIHSGKAFHILGHRNNPKVRSLIVSRFEEDFW--IRSASVFHNLTLLRVLDLSRVKFEGG 591

Query: 186 QFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMPAGYID-----HSPEGIWMM 240
           + P  +  L  L+YL L    +  LP    T+ NL+ L      +D     H P    ++
Sbjct: 592 KLPSSIGGLIHLRYLSLYGAVVSHLP---STMRNLKLLLFLNLRVDNKEPIHVPN---VL 645

Query: 241 QKLMHLNFDSITLPAPPKNYSS-------SLKNLIFISALHPSSCTPDILSRLPTVQTLR 293
           ++++ L +  ++LP    + +        +L+ L + S  H  S   D+L R+  ++ L 
Sbjct: 646 KEMLELRY--LSLPQEMDDKTKLELGDLVNLEYLWYFSTQH--SSVTDLL-RMTKLRNLG 700

Query: 294 ISGDLSHYHSGVSKSLCELHKLECL------KLVNGSKLSRMVLS--------------- 332
           +S         +S SL EL  LE L      ++V    +   VL                
Sbjct: 701 VSLSERCNFETLSSSLRELRNLEMLNVLFSPEIVMVDHMGEFVLDHFIHLKQLGLAVRMS 760

Query: 333 ----EYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFGRKLACVGSGGFP 388
               ++QFPP L  + L +  + EDPMP+LE+L  L+ + L   ++ GR++ C   GGFP
Sbjct: 761 KIPDQHQFPPHLAHIHLVHCVMKEDPMPILEKLLHLKSVALSYGAFIGRRVVC-SKGGFP 819

Query: 389 EL 390
           +L
Sbjct: 820 QL 821

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8W4J9|RPP8_ARATH Disease resistance protein RPP8 OS=Arabidopsis thaliana GN=RPP8 PE=1 SV=2

 Score = 80.9 bits (198), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 106/420 (25%), Positives = 176/420 (41%), Gaps = 53/420 (12%)

Query: 17  SVMELPFHLKVYCIYLCVFCPSIEISTRQLCQLWIAEGFIPYNS-EETAEYYLKELIHRG 75
           S  +LP HLK   + L  F    EIST  L   W AEG    ++ E++ EYYL+EL+ R 
Sbjct: 415 SYEDLPTHLKHCFLNLAHFPEDSEISTYSLFYYWAAEGIYDGSTIEDSGEYYLEELVRRN 474

Query: 76  FIQVSKRRAGGTIKACYVPSLVYYSLLLVAEKTRFVLM-------PNKEEESLATVKRCF 128
            +           K C +  ++    L  A++  F+ +            +S +  +R  
Sbjct: 475 LVIADDNYLSWQSKYCQMHDMMREVCLSKAKEENFLQIIIDPTCTSTINAQSPSRSRRLS 534

Query: 129 ILEDLIEFISLEQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLN--WGSAVLDQ 186
           I       I   ++   ++S +    E D+   I   +   N   LRVL+  W      +
Sbjct: 535 IHSGKAFHILGHKNKTKVRSLIVPRFEEDY--WIRSASVFHNLTLLRVLDLSWVKFEGGK 592

Query: 187 FPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMPAGYID-----HSPEGIWMMQ 241
            P  +  L  L+YL L    +  LP    T+ NL+ L      +D     H P    +++
Sbjct: 593 LPCSIGGLIHLRYLSLYEAKVSHLP---STMRNLKLLLYLNLRVDTEEPIHVPN---VLK 646

Query: 242 KLMHLNFDSITLPAPPKNY--SSSLKNLIFISALHPSSCTPDILSRLPTVQTLRISGDLS 299
           +++ L + S+ L    K       L NL ++        +   L R+  ++ L +S    
Sbjct: 647 EMIQLRYLSLPLKMDDKTKLELGDLVNLEYLYGFSTQHSSVTDLLRMTKLRYLAVSLSER 706

Query: 300 HYHSGVSKSLCELHKLECL--------------------------KLVNGSKLSRMVLSE 333
                +S SL EL  LE L                          +L    ++S+ +  +
Sbjct: 707 CNFETLSSSLRELRNLETLNFLFSLETYMVDYMGEFVLDHFIHLKQLGLAVRMSK-IPDQ 765

Query: 334 YQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFGRKLACVGSGGFPELQVL 393
           +QFPP L+ L L    + EDPMP+LE+L  L+ ++L R ++ G ++ C   GGFP+L V+
Sbjct: 766 HQFPPHLVHLFLIYCGMEEDPMPILEKLLHLKSVRLARKAFLGSRMVC-SKGGFPQLCVI 824

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. The interaction with TIP (TCV-interacting protein) may be essential for the recognition of the avirulence proteins, and the triggering of the defense response.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XIF0|DRL13_ARATH Putative disease resistance protein At1g59780 OS=Arabidopsis thaliana GN=At1g59780 PE=2 SV=1

 Score = 80.1 bits (196), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 115/406 (28%), Positives = 180/406 (44%), Gaps = 43/406 (10%)

Query: 21  LPFHLKVYCIYLCVFCPSIEISTRQLCQLWIAEGFI-PYNSE-----ETAEYYLKELIHR 74
           LP +LK   +YL  +    EI   +L  +W AEG   P N E     + A+ Y++EL+ R
Sbjct: 412 LPGYLKHCLLYLASYPEDHEIEIERLSYVWAAEGITYPGNYEGATIRDVADLYIEELVKR 471

Query: 75  GFIQVSKRRA-GGTIKACYVPSLVYYSLLLVAEKTRF---VLMPNKEEESLATV----KR 126
             + +S+R A     + C +  L+    LL A++  F   V  P       +      +R
Sbjct: 472 NMV-ISERDALTSRFEKCQLHDLMREICLLKAKEENFLQIVTDPTSSSSVHSLASSRSRR 530

Query: 127 CFILEDLIEFISLEQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLD- 185
             +    I     +  +  L+S L         ++    NF E    LRVL+   A    
Sbjct: 531 LVVYNTSIFSGENDMKNSKLRSLLFIPVGYSRFSM--GSNFIE-LPLLRVLDLDGAKFKG 587

Query: 186 -QFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETL-----EMPAGYIDHSPEGIWM 239
            + P  +  L  LKYL L   ++  LP    +L NL++L      + +G + + P     
Sbjct: 588 GKLPSSIGKLIHLKYLSLYQASVTYLP---SSLRNLKSLLYLNLRINSGQLINVPNVFKE 644

Query: 240 MQKLMHLN--FDSITLPAPPKNYSSSLKNLIFISALHPSSCTPDILSRLPTVQTLRISGD 297
           M +L +L+  ++  +L          L+ LI  S    S      +++L T+Q L ISG+
Sbjct: 645 MLELRYLSLPWERSSLTKLELGNLLKLETLINFSTKDSSVTDLHRMTKLRTLQIL-ISGE 703

Query: 298 LSHYHSGVSKSLCELHKLECLKLVNGSK---------LSRMVLSEYQ-FPPSLIQLSLSN 347
             H  + +S +L  L  LE L +              + R +L + Q FP  L  +SL  
Sbjct: 704 GLHMET-LSSALSMLGHLEDLTVTPSENSVQFKHPKLIYRPMLPDVQHFPSHLTTISLVY 762

Query: 348 TELMEDPMPMLERLPRLQVMKLKRNSYFGRKLACVGSGGFPELQVL 393
             L EDPMP LE+L +L+V+ L  N+Y GR++ C G GGFP L  L
Sbjct: 763 CFLEEDPMPTLEKLLQLKVVSLWYNAYVGRRMVCTG-GGFPPLHRL 807

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P0DI18|DRL45_ARATH Probable disease resistance protein RDL6 OS=Arabidopsis thaliana GN=RDL6 PE=2 SV=1

 Score = 78.2 bits (191), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 104/438 (23%), Positives = 186/438 (42%), Gaps = 81/438 (18%)

Query: 17  SVMELPFHLKVYCIYLCVFCPSIEISTRQLCQLWIAEG-FIP--YNSE---ETAEYYLKE 70
           S  ELP +LK   +YL  F    EI+ + L   W AEG F P  Y+ E   +  + Y++E
Sbjct: 416 SFEELPSYLKHCFLYLAHFPDDYEINVKNLSYYWAAEGIFQPRHYDGEIIRDVGDVYIEE 475

Query: 71  LIHRGFIQVSKRRAGGTIKACYVPSLVYYSLLLVAEKTRFVLMPNKEEE-----SLATVK 125
           L+ R  +   +       + C++  ++    LL A++  F+ + +         S+ T +
Sbjct: 476 LVRRNMVISERDVKTSRFETCHLHDMMREVCLLKAKEENFLQITSSRTSTGNSLSIVTSR 535

Query: 126 RCFILEDLIEFISLEQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLD 185
           R      +   +  + +D  L+S          + + +   F   + ++ +   GS+ + 
Sbjct: 536 RLVYQYPITLDVEKDINDPKLRSL---------VVVANTYMFWGGWSWMLL---GSSFI- 582

Query: 186 QFPPGLENLFLLKYLQLNIPTLKCLPLL--ICTLLNLETLEMPAGYIDHSPEGIWMMQKL 243
                   L LL+ L ++   LK   L   I  L++L  L +    + H P  +  ++ L
Sbjct: 583 -------RLELLRVLDIHRAKLKGGKLASSIGQLIHLRYLNLKHAEVTHIPYSLGNLKLL 635

Query: 244 MHLNF-----DSITLP------------APPKNYSSSLK----NLIFISALH---PSSCT 279
           ++LN       S  +P            A PK+     K    NL+ +  L      +C+
Sbjct: 636 IYLNLVILVSGSTLVPNVLKEMQQLRYLALPKDMGRKTKLELSNLVKLETLKNFSTKNCS 695

Query: 280 PDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVN-GSKLSR---------- 328
            + L  +  ++TL I          ++ S+  L  LE L + + GS++            
Sbjct: 696 LEDLRGMVRLRTLTIELRKETSLETLAASIGGLKYLESLTITDLGSEMRTKEAGIVFDFV 755

Query: 329 ------------MVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFG 376
                        +  E  FP  L  L L +  L EDPMP+LE+L +L+ ++L+R S+ G
Sbjct: 756 YLKTLTLKLYMPRLSKEQHFPSHLTTLYLQHCRLEEDPMPILEKLHQLKELELRRKSFSG 815

Query: 377 RKLACVGSGGFPELQVLT 394
           +++ C  SGGFP+LQ L+
Sbjct: 816 KEMVC-SSGGFPQLQKLS 832

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P0DI17|DRL11_ARATH Probable disease resistance protein RF9 OS=Arabidopsis thaliana GN=RF9 PE=2 SV=1

 Score = 78.2 bits (191), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 104/438 (23%), Positives = 186/438 (42%), Gaps = 81/438 (18%)

Query: 17  SVMELPFHLKVYCIYLCVFCPSIEISTRQLCQLWIAEG-FIP--YNSE---ETAEYYLKE 70
           S  ELP +LK   +YL  F    EI+ + L   W AEG F P  Y+ E   +  + Y++E
Sbjct: 416 SFEELPSYLKHCFLYLAHFPDDYEINVKNLSYYWAAEGIFQPRHYDGEIIRDVGDVYIEE 475

Query: 71  LIHRGFIQVSKRRAGGTIKACYVPSLVYYSLLLVAEKTRFVLMPNKEEE-----SLATVK 125
           L+ R  +   +       + C++  ++    LL A++  F+ + +         S+ T +
Sbjct: 476 LVRRNMVISERDVKTSRFETCHLHDMMREVCLLKAKEENFLQITSSRTSTGNSLSIVTSR 535

Query: 126 RCFILEDLIEFISLEQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLD 185
           R      +   +  + +D  L+S          + + +   F   + ++ +   GS+ + 
Sbjct: 536 RLVYQYPITLDVEKDINDPKLRSL---------VVVANTYMFWGGWSWMLL---GSSFI- 582

Query: 186 QFPPGLENLFLLKYLQLNIPTLKCLPLL--ICTLLNLETLEMPAGYIDHSPEGIWMMQKL 243
                   L LL+ L ++   LK   L   I  L++L  L +    + H P  +  ++ L
Sbjct: 583 -------RLELLRVLDIHRAKLKGGKLASSIGQLIHLRYLNLKHAEVTHIPYSLGNLKLL 635

Query: 244 MHLNF-----DSITLP------------APPKNYSSSLK----NLIFISALH---PSSCT 279
           ++LN       S  +P            A PK+     K    NL+ +  L      +C+
Sbjct: 636 IYLNLVILVSGSTLVPNVLKEMQQLRYLALPKDMGRKTKLELSNLVKLETLKNFSTKNCS 695

Query: 280 PDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVN-GSKLSR---------- 328
            + L  +  ++TL I          ++ S+  L  LE L + + GS++            
Sbjct: 696 LEDLRGMVRLRTLTIELRKETSLETLAASIGGLKYLESLTITDLGSEMRTKEAGIVFDFV 755

Query: 329 ------------MVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFG 376
                        +  E  FP  L  L L +  L EDPMP+LE+L +L+ ++L+R S+ G
Sbjct: 756 YLKTLTLKLYMPRLSKEQHFPSHLTTLYLQHCRLEEDPMPILEKLHQLKELELRRKSFSG 815

Query: 377 RKLACVGSGGFPELQVLT 394
           +++ C  SGGFP+LQ L+
Sbjct: 816 KEMVC-SSGGFPQLQKLS 832

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P59584|RP8HA_ARATH Disease resistance protein RPH8A OS=Arabidopsis thaliana GN=RPH8A PE=3 SV=1

 Score = 77.8 bits (190), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 100/413 (24%), Positives = 173/413 (41%), Gaps = 43/413 (10%)

Query: 17  SVMELPFHLKVYCIYLCVFCPSIEISTRQLCQLWIAEGFIPYNS-EETAEYYLKELIHRG 75
           S  +LP HLK   ++L  +    +I T+ L   W AEG    ++ +++ EYYL+EL+ R 
Sbjct: 415 SYEDLPTHLKHCFLHLAHYPEDSKIYTQDLFNYWAAEGIYDGSTIQDSGEYYLEELVRRN 474

Query: 76  FIQVSKRR--AGGTIKACYVPSLVYYSLLLVAEKTRFVLMPNK-------EEESLATVKR 126
            +    R   +   IK C +  ++    L  A++  F+ +            +S +  +R
Sbjct: 475 LVIADNRYLISEFKIKNCQMHDMMREVCLSKAKEENFLQIIKDPTCTSTINAQSPSRSRR 534

Query: 127 CFILEDLIEFISLEQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLN--WGSAVL 184
             I       I   + +  ++S +    E D    I   +   N   LRVL+  W     
Sbjct: 535 LSIHSGKAFHILGHKRNAKVRSLIVSRFEED--FWIRSASVFHNLTLLRVLDLSWVKFEG 592

Query: 185 DQFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMPAGYID--HSPEGIWMMQK 242
            + P  +  L  L+YL+L    +  LP  +  L  L  L +     D  H P  +  M +
Sbjct: 593 GKLPCSIGGLIHLRYLRLYGAVVSHLPSTMRNLKLLLYLNLSVHNEDLIHVPNVLKEMIE 652

Query: 243 LMHLNFDSITLPAPPKNYSSSLKNLIFISALHPSSCTPDILSRLPTVQTLRISGDLSHYH 302
           L +L+   + +    K     L NL ++        +   L R+  ++ L +S    +  
Sbjct: 653 LRYLSI-PVKMDDKTKLELGDLVNLEYLYGFSTQHTSVTDLLRMTKLRNLTVSLSERYNF 711

Query: 303 SGVSKSLCELHKLECLKLVNGSK------LSRMVL-------------------SEYQFP 337
             +S SL EL  LE L ++   K      +   VL                    ++QFP
Sbjct: 712 KTLSSSLRELRNLETLYVLFSRKTYMVDHMGEFVLDHFIHLKELGLVVRMSKIPDQHQFP 771

Query: 338 PSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFGRKLACVGSGGFPEL 390
           P L+ + L    + EDPMP+LE+L  L+ ++L+  ++ GR++ C    GF +L
Sbjct: 772 PHLVHIFLFYCGMEEDPMPILEKLHHLKSVQLRYKAFVGRRMVC-SKDGFTQL 823

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. In contrast to RPP8, it does not specifically recognize the Emco5 avirulence protein from Hyaloperonospora parasitica.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6L3Z7|R1B14_SOLDE Putative late blight resistance protein homolog R1B-14 OS=Solanum demissum GN=R1B-14 PE=3 SV=1

 Score = 77.4 bits (189), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 120/421 (28%), Positives = 182/421 (43%), Gaps = 69/421 (16%)

Query: 14   QIYSVMELPFHLKVYCIYLCVFCPSIEISTRQLCQLWIAEGFIPYNS----EETAEYYLK 69
            Q Y V  LP HLK   +Y   F     I   +L +LWI+E FI  +     E+ AE YL+
Sbjct: 778  QSYHV--LPCHLKSCFLYFGAFLEDEVIDISRLIRLWISESFIKSSEGRRLEDIAEGYLE 835

Query: 70   ELIHRGFIQVSKR-RAGGTIKACYVPSLVYYSLLLVAEKTRFVLMPNKEEESLATVKR-- 126
             LI R  + V++R  + G +KAC +  ++       A +  F+L  N+++ S   V    
Sbjct: 836  NLIGRNLVMVTQRADSDGKVKACRLHDVLLDFCKERAAEENFLLWINRDQISTKAVYSHK 895

Query: 127  -----CFI-LEDLIEF---ISLEQSDMYL--QSFLNHSSESDHLALIDCENFCENFKYLR 175
                  F  +++L+E+    SL  S ++    S+L   + S  L L+       NFK+L+
Sbjct: 896  QHAHLAFTEMDNLVEWSASCSLVGSVLFKNPDSYLYSPAFSTSLILL-------NFKFLK 948

Query: 176  VLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETL---EMPAGYIDH 232
            VL+    V+  F P    LF L+YL  +I     +P  I  L NLETL     P G   H
Sbjct: 949  VLDLEHQVVIDFIPT--ELFYLRYLSASIEQ-NSIPSSISNLWNLETLILKSTPVGR--H 1003

Query: 233  S----PEGIWMMQKLMHLNFDSITLPAPPKNYSSSLKNLIFISALHPSSCTPDILSRLPT 288
            +    P  IW M KL HL+    +    P+N  + L+N   +  L   S TP   S    
Sbjct: 1004 NTLLLPSTIWDMVKLRHLHIPKFS----PENEEALLENSARLYDLETIS-TPYFSSVEDA 1058

Query: 289  VQTLRISGDLSHYHSGVSKSLCELH---------------KLECLKLVNGSKLSRMVLSE 333
               LR + +L        K +CE+                +LE LKL        +    
Sbjct: 1059 ELILRKTPNL-------RKLICEVECLEYPPQYHVLNFPIRLEILKLYRSKAFKTIPFCI 1111

Query: 334  YQFPPSLIQLSLSNTELMEDPMP-MLERLPRLQVMKLKRNSYFGRKLACVGSGGFPELQV 392
                P+L  L LS   L    +   ++ L  L+V+KL    +   +   V +G FP+L++
Sbjct: 1112 S--APNLKYLKLSGFYLDSQYLSETVDHLKHLEVLKLCDLEFGDHREWKVSNGMFPQLKI 1169

Query: 393  L 393
            L
Sbjct: 1170 L 1170

Confers resistance to late blight (Phytophthora infestans) races carrying the avirulence gene Avr1. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.

Solanum demissum (taxid: 50514)

>sp|Q9STE7|R13L3_ARATH Putative disease resistance RPP13-like protein 3 OS=Arabidopsis thaliana GN=RPP13L3 PE=3 SV=1

 Score = 77.4 bits (189), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 104/420 (24%), Positives = 181/420 (43%), Gaps = 41/420 (9%)

Query: 6   EAILTVWRQ-------IYSVMELPF-----HLKVYCIYLCVFCPSIEISTRQLCQLWIAE 53
           E   ++WR+       I +V +L F      LK+  +Y  VF    EI   +L  L +AE
Sbjct: 386 EVCASLWRRLKDNSIHISTVFDLSFKEMRHELKLCFLYFSVFPEDYEIKVEKLIHLLVAE 445

Query: 54  GFIPYNS----EETAEYYLKELIHRGFIQVSKRRAGGTIKACYVPSLVYYSLLLVAEKTR 109
           GFI  +     E+ A  Y+ EL+ R  ++ ++R   G + +C +  L+    +  A++  
Sbjct: 446 GFIQEDEEMMMEDVARCYIDELVDRSLVK-AERIERGKVMSCRIHDLLRDLAIKKAKELN 504

Query: 110 FVLMPNKEEESLATVKRCFILEDLIE-FISLEQSDMYLQSFLNHSSESDHLALIDCENFC 168
           FV + N+++ S    +R  +   + + ++   + +  ++SFL    E      ++  N  
Sbjct: 505 FVNVYNEKQHSSDICRREVVHHLMNDYYLCDRRVNKRMRSFL-FIGERRGFGYVNTTNL- 562

Query: 169 ENFKYLRVLNW------GSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLET 222
              K LRVLN          + +  P  +  L  L+YL +    +  LP  I  L  L+T
Sbjct: 563 -KLKLLRVLNMEGLLFVSKNISNTLPDVIGELIHLRYLGIADTYVSILPASISNLRFLQT 621

Query: 223 LEMPAGYIDHSPEGIWMMQKLMHL--NFDSITLPAPPKNYSSSLKNLIFISALHPSSCTP 280
           L+            +  +  L H+   F    L     N    L+ L  IS+   S    
Sbjct: 622 LDASGNDPFQYTTDLSKLTSLRHVIGKFVGECLIGEGVN----LQTLRSISSYSWSKLNH 677

Query: 281 DILSRLPTVQTLRISGDLSHYHSGVS-KSLCELHKLECLKL------VNGSKLSRMVLSE 333
           ++L  L  ++    S  +      ++  S  +   L  LKL      ++    + + L +
Sbjct: 678 ELLRNLQDLEIYDHSKWVDQRRVPLNFVSFSKPKNLRVLKLEMRNFKLSSESRTTIGLVD 737

Query: 334 YQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFGRKLACVGSGGFPELQVL 393
             F PSL  L+L  T L E+ MP L++LPRL+ + LK  +Y G K+  + + GF  L+ L
Sbjct: 738 VNF-PSLESLTLVGTTLEENSMPALQKLPRLEDLVLKDCNYSGVKIMSISAQGFGRLKNL 796

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6L3X3|R1B8_SOLDE Putative late blight resistance protein homolog R1B-8 OS=Solanum demissum GN=R1B-8 PE=5 SV=1

 Score = 77.0 bits (188), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 112/423 (26%), Positives = 178/423 (42%), Gaps = 82/423 (19%)

Query: 21   LPFHLKVYCIYLCVFCPSIEISTRQLCQLWIAEGFIP----YNSEETAEYYLKELIHRGF 76
            LP HLK   +Y   F     I   +L  LWI+E FI        E  AE YL+ LI R  
Sbjct: 702  LPCHLKSCFLYFGAFLEDRVIDISRLIGLWISESFIKSCEGRRLEYIAEGYLENLIGRNL 761

Query: 77   IQVSKRR-AGGTIKACYVPSLVYYSLLLVAEKTRFVLMPNKEEESLATVKR------CFI 129
            + V++R  + G +KAC +  ++       A +  F+L  N+++ + A           F 
Sbjct: 762  VMVTQRAISDGKVKACRLHDVLLDFCKKRAAEENFLLWINRDQSTKAVYSHKQHAHLAFT 821

Query: 130  -LEDLIEF---------ISLEQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNW 179
             +++L+E+         +  +  D Y +   +H+    H+ L        NFK+L+VL+ 
Sbjct: 822  EMDNLVEWSASCSLVGSVLFKSYDPYFRPLSSHAFAISHILL--------NFKFLKVLDL 873

Query: 180  GSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMPAGYIDHS-----P 234
               V+  F P    LF L+YL  +I     +P  I  L NLETL + +           P
Sbjct: 874  EHQVIIDFIPT--ELFYLRYLSAHIDQ-NSIPSSISNLWNLETLILKSRSASKHNRVLLP 930

Query: 235  EGIWMMQKLMHLN---FDSITLPAPPKNYSSSLKNLIFISALHPSSCTPD--ILSRLPTV 289
              +W M KL HL+   F +    A  +N S+ L +L  +S+ + S       +L R P +
Sbjct: 931  STVWDMVKLRHLHIPYFSTEDEEALLEN-SAKLYDLETLSSPYFSRVEDAELMLRRTPNL 989

Query: 290  QTLRISGDLSHYHSGVSKSLCELH---------------KLECLKLVNGSKLSRMV---L 331
            + L                +CE+                +LE LKL N SK  + +   +
Sbjct: 990  RKL----------------ICEVQCLESPHQYHVLNFPIRLEILKLYNRSKAFKTIPFCI 1033

Query: 332  SEYQFPPSLIQLSLSNTELMEDPMP-MLERLPRLQVMKLKRNSYFGRKLACVGSGGFPEL 390
            S     P+L  L LS   L    +    + L  L+V+KL    +       V +G FP+L
Sbjct: 1034 S----APNLKYLKLSRFYLDSQYLSETADHLKHLEVLKLSCVEFGDHGEWEVSNGMFPQL 1089

Query: 391  QVL 393
            ++L
Sbjct: 1090 KIL 1092

Confers resistance to late blight (Phytophthora infestans) races carrying the avirulence gene Avr1. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.

Solanum demissum (taxid: 50514)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	394
359496848	856	PREDICTED: disease resistance RPP8-like	0.954	0.439	0.289	1e-34
359491404	922	PREDICTED: probable disease resistance R	0.926	0.395	0.323	2e-34
350535589	888	NRC1 [Solanum lycopersicum] gi|83630761|	0.959	0.425	0.327	3e-34
147766035	902	hypothetical protein VITISV_038742 [Viti	0.954	0.416	0.282	4e-33
147781606	1183	hypothetical protein VITISV_025760 [Viti	0.954	0.317	0.296	3e-30
225433944	1086	PREDICTED: disease resistance RPP8-like	0.954	0.346	0.296	4e-30
225433948	1045	PREDICTED: putative disease resistance p	0.931	0.351	0.273	4e-28
296081343	1312	unnamed protein product [Vitis vinifera]	0.939	0.282	0.297	6e-27
297745279	920	unnamed protein product [Vitis vinifera]	0.939	0.402	0.281	7e-27
359495931	1359	PREDICTED: probable disease resistance p	0.939	0.272	0.297	7e-27

>gi|359496848|ref|XP_002269653.2| PREDICTED: disease resistance RPP8-like protein 3-like [Vitis vinifera]

 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 118/407 (28%), Positives = 202/407 (49%), Gaps = 31/407 (7%)

Query: 17  SVMELPFHLKVYCIYLCVFCPSIEISTRQLCQLWIAEGFIPYNSEET----AEYYLKELI 72
           S  +LP++LK   +Y  +F   +EI   +L  LWIAEGF+    EE+    AE +L+EL+
Sbjct: 373 SYNDLPYYLKPCFLYFGLFPEDLEIPVGKLVLLWIAEGFVQQRGEESMEDVAEDFLEELV 432

Query: 73  HRGFIQVSKRRAGGTIKACYVPSLVYYSLLLVAEKTRF--VLMPNKEEESLAT-VKRCFI 129
            R  IQV+++R  G IKAC +  L+    +  A++ +F  +L     + S+ T  +R  +
Sbjct: 433 DRSMIQVAEKRYNGKIKACRIHDLLRDLAMSEAKECKFLEILDSTNIDTSVTTRARRISV 492

Query: 130 LEDLIEFISLEQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPP 189
              L E++ L   + + +S L+ S   + L     ++  E+ K LRVL+         P 
Sbjct: 493 HSSLEEYMKLRHPNPHFRSMLHFSRCEESLRRDQWKSLFESLKLLRVLDLERVQTHALPK 552

Query: 190 GLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMPAGYIDHSPEGIWMMQKLMHLNFD 249
            +  L  L+YL L    L+ LP  I    NL+TL++ A  +   P  +W M  L HL  +
Sbjct: 553 EIRELVHLRYLGLRRTGLQRLPSSIQNFCNLQTLDIRATKVSRLPIQLWNMPGLRHLYLE 612

Query: 250 SITLPA-PPKNYSSSLKNLIFISALHPSSCTPDILSRLPTVQTLRISGDLSHYHSGVSKS 308
             ++   PP + S      +   +++ +   PD+L +L  ++ L I G  +     +S+ 
Sbjct: 613 KTSIAGHPPVHVSVMHLQTLSTVSIYGNQWIPDLLGKLTNLRKLGIHGYFASQTEALSRC 672

Query: 309 LCELHKLECLK--------------LVNGSKLSRMVLSE--------YQFPPSLIQLSLS 346
           L +L  L+ L+              L+N   + ++ LS          +  P+L ++ L 
Sbjct: 673 LVKLSNLQNLQLRGTELILEPTIKLLLNQPNIHKLHLSGPIEKLPDPQEIQPNLTKIILE 732

Query: 347 NTELMEDPMPMLERLPRLQVMKLKRNSYFGRKLACVGSGGFPELQVL 393
           N+ L++D   +L +LP LQ++KL  NS+FG+++ C  S GFP+L  L
Sbjct: 733 NSLLVQDIFVILGKLPNLQMLKLLINSFFGKEITCSAS-GFPKLHGL 778

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491404|ref|XP_002274414.2| PREDICTED: probable disease resistance RPP8-like protein 2-like [Vitis vinifera]

 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 134/414 (32%), Positives = 202/414 (48%), Gaps = 49/414 (11%)

Query: 17  SVMELPFHLKVYCIYLCVFCPSIEISTRQLCQLWIAEGFIPYNS----EETAEYYLKELI 72
           S  +LP++LK   +Y  +F    EIS R+L  LW+AEGF+        E+ AE YL+EL+
Sbjct: 427 SYSDLPYYLKSCFLYFGLFPEDYEISARRLILLWVAEGFVQPRGQEPLEDVAEDYLEELV 486

Query: 73  HRGFIQVSKRRAGGTIKACYVPSLVYYSLLLVAEKTRFVLMPNKEEESLATVKRCFILED 132
            R  IQV+ R++ G IK C V  L++             +   KE++ L  +   F +  
Sbjct: 487 GRSMIQVATRKSNGRIKTCCVHDLLH----------ELSVSKGKEDQFLDIIHGEFTVSS 536

Query: 133 LIEFISLEQSDMYLQSFLNHSSESDHLALIDCE-NFCE--NFKYLRVLNWGSAVLDQFPP 189
           L     L        +  N S     L    CE +F E   FK LR+L+     + +   
Sbjct: 537 LTRVRRLAIHLGVPPTTKNTSKVRSLLCFDICEPSFQELRKFKLLRILDLEGVYISRLHS 596

Query: 190 GLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMPAGYIDHSPEGIWMMQKLMHLNFD 249
            + NL  L+YL L    LK LP  I  LLNL+TL++ +  ++  P  IW MQKL HL F+
Sbjct: 597 SIGNLIHLRYLGLRGTWLKKLPPSIQFLLNLQTLDLRSTLLNPIPIVIWKMQKLRHLYFN 656

Query: 250 SITLPAPPKNYSSSLKNLIFISA--LHPSSCTPDILSRLPTVQTLRISGDLSHYHSGVSK 307
            +   A      +SL NL  +    ++ +S   + LS+L  ++ L + GDL  +   + K
Sbjct: 657 ELEEMAVNPPTDASLANLQTLHGICINQTSYVENGLSKLTNLRELGLHGDLLLHEEAIGK 716

Query: 308 SLCELHKLECLKL----------------VNGSK------------LSRMVLSEYQFPPS 339
            +    +LECLKL                +N S             ++++  +EY FP +
Sbjct: 717 WIFSSERLECLKLHTRDVMGDFAKNAIPKLNFSSHPHLIKLHLKGFMAKLFDAEY-FPQN 775

Query: 340 LIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFGRKLACVGSGGFPELQVL 393
           L +LSL  + LMEDPM  LE L  L+V+KLK ++Y G+++ C   GGFP+L  L
Sbjct: 776 LTELSLKGSFLMEDPMVKLEMLQSLRVLKLKHSAYLGKEMIC-SCGGFPQLHFL 828

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350535589|ref|NP_001234202.1| NRC1 [Solanum lycopersicum] gi|83630761|gb|ABC26878.1| NRC1 [Solanum lycopersicum]

 Score =  152 bits (383), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 132/403 (32%), Positives = 201/403 (49%), Gaps = 25/403 (6%)

Query: 13  RQIYSVMELPFHLKVYCIYLCVFCPSIEISTRQLCQLWIAEGFIPYNSEET----AEYYL 68
           R  Y V  LP+  K   +Y   F     I  R+L +LWIAEGFI Y  + +    AE YL
Sbjct: 397 RMSYDV--LPYDWKACFLYFGTFPRGYLIPARKLIRLWIAEGFIQYRGDLSPECKAEEYL 454

Query: 69  KELIHRGFIQVSKRRAGGTIKACYVPSLVYYSLLLVA--EKTRFVLMPNKEEESL---AT 123
            EL++R  + V +R   G IK C V  ++Y      A  E+  F  +    E+S+   +T
Sbjct: 455 NELVNRNLVMVMQRTVDGQIKTCRVHDMLYEFCWQEATTEENLFHEVKFGGEQSVREVST 514

Query: 124 VKRCFILEDLIEFISLEQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAV 183
            +R  I   ++EFIS + S  +++SFL  S E          N  + F  LRV +  S  
Sbjct: 515 HRRLCIHSSVVEFISKKPSGEHVRSFLCFSPEKIDTPPTVSANISKAFPLLRVFDTESIK 574

Query: 184 LDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMPAGYIDHSPEG-IWMMQK 242
           +++F      L+ L+Y+  +  ++K +P  +  L N++TL +    I+   +  I  M +
Sbjct: 575 INRFCKEFFQLYHLRYIAFSFDSIKVIPKHVGELWNVQTLIVNTQQINLDIQADILNMPR 634

Query: 243 LMH-LNFDSITLP--APPKNYSSSLKN--LIFISALHPSSCTPDILSRLPTVQTLRISGD 297
           L H L   S  LP  A PK   ++L N  L  +S + P SCT  +LSR P ++ L I G 
Sbjct: 635 LRHLLTNTSAKLPALANPKTSKTTLVNQSLQTLSTIAPESCTEYVLSRAPNLKKLGIRGK 694

Query: 298 LSHY----HSGVSKSLCELHKLECLKLVNGSKLSRMVLS---EYQFPPSLIQLSLSNTEL 350
           ++       S +  ++  L  LE LKL+N  ++ +  L       FP  L +L+L +T L
Sbjct: 695 IAKLMEPSQSVLLNNVKRLQFLENLKLINVGQIDQTQLRLPPASIFPTKLRKLTLLDTWL 754

Query: 351 MEDPMPMLERLPRLQVMKLKRNSYFGRKLACVGSGGFPELQVL 393
             D M +L++L  LQV+KLK N++ G     +  GGFP LQVL
Sbjct: 755 EWDDMSVLKQLENLQVLKLKDNAFKGENWE-LNDGGFPFLQVL 796

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147766035|emb|CAN70214.1| hypothetical protein VITISV_038742 [Vitis vinifera]

 Score =  148 bits (374), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 115/407 (28%), Positives = 200/407 (49%), Gaps = 31/407 (7%)

Query: 17  SVMELPFHLKVYCIYLCVFCPSIEISTRQLCQLWIAEGFIPYNSEET----AEYYLKELI 72
           S  +LP++LK   +Y  +F   +EI   +L  LWIAEGF+    EE+    AE +L+EL+
Sbjct: 419 SYNDLPYYLKPCFLYFGLFPEDLEIPVGKLVLLWIAEGFVQQRGEESMEDVAEDFLEELV 478

Query: 73  HRGFIQVSKRRAGGTIKACYVPSLVYYSLLLVAEKTRF--VLMPNKEEESLAT-VKRCFI 129
            R  IQV+++R  G IK C +  L+    +  A++ +F  +L     + S+ T  +R  +
Sbjct: 479 DRSMIQVAEKRYNGKIKMCRIHDLLRDLAMSEAKECKFLEILDSTNIDTSVTTRARRISV 538

Query: 130 LEDLIEFISLEQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPP 189
              L E++ L   + + +S L+ S   + L     ++  E+ K LRVL+         P 
Sbjct: 539 HSSLEEYMKLRHPNPHFRSMLHFSRCEESLRREQWKSLFESLKLLRVLDLERVQTHALPK 598

Query: 190 GLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMPAGYIDHSPEGIWMMQKLMHLNFD 249
            +  L  L+YL L    L+ LP  +    NL+TL++ A  +   P  +W M  L HL  +
Sbjct: 599 EIRELVHLRYLGLRRTGLQRLPSSVQNFCNLQTLDIRATKVSRLPIQLWNMPGLRHLYLE 658

Query: 250 SITLPA-PPKNYSSSLKNLIFISALHPSSCTPDILSRLPTVQTLRISGDLSHYHSGVSKS 308
             ++   PP + S      +   +++ +   PD+L +L  ++ L I G  +     +S+ 
Sbjct: 659 KTSIAGHPPVHVSVMHLQTLSTVSIYGNQWIPDLLGKLTNLRKLGIHGYFASQTEALSRC 718

Query: 309 LCELHKLECLK--------------LVNGSKLSRMVLSE--------YQFPPSLIQLSLS 346
           L +L  L+ L+              L+N   + ++ LS          +  P+L ++ L 
Sbjct: 719 LVKLSNLQNLQLRGTELILEPTIKLLLNQPNIHKLHLSGPIEKLPDPQEIQPNLTKIILE 778

Query: 347 NTELMEDPMPMLERLPRLQVMKLKRNSYFGRKLACVGSGGFPELQVL 393
            + L++D   +L +LP LQ++KL  NS+FG+++ C  S GFP+L  L
Sbjct: 779 KSLLVQDIFVILGKLPNLQMLKLLINSFFGKEITCSAS-GFPKLHGL 824

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147781606|emb|CAN64832.1| hypothetical protein VITISV_025760 [Vitis vinifera]

 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 135/455 (29%), Positives = 202/455 (44%), Gaps = 79/455 (17%)

Query: 11   VWRQIYSVMEL--PFHLKVYCIYLCVFCPSIEISTRQLCQLWIAEGFIP-----YNSEET 63
            +W    S+++   P H+K    Y  +F   I++  R+L  LW+AEG +        SE+ 
Sbjct: 678  LWSNTLSMIDRKCPLHMKRCLFYFGLFPQDIDVPARRLIALWVAEGLMQPEGENETSEDV 737

Query: 64   AEYYLKELIHRGFIQVSKRRAGGTIKACYVPSLVYYSLLLVAEKTRFVLM--PNKEEESL 121
            AE  L +LI +G +QV+K++  G +K C +P  +    L  A +T F+      + E SL
Sbjct: 738  AEICLIKLIAQGMVQVTKKKLNGDVKTCRLPDALQRHWLSKARQTTFLQFHTNTRSELSL 797

Query: 122  AT--VKRCFILEDLIEF-------------ISLEQSDMYLQSFLNHSSESDHLALIDCEN 166
            +T  V+R     D  +F              SL+    +  SFL+  ++       D  N
Sbjct: 798  STGLVRRLVDHLDKEDFSYGHIHGEYNRTLTSLKPRYQHALSFLSFDTQEGSKPGEDIGN 857

Query: 167  FCEN------FKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNL 220
            F         F  LRVL+       + P  +  L  L+YL L    L+ LP  I  L NL
Sbjct: 858  FLHRCISSSCFLLLRVLDLEHVFRPKLPETIGKLSRLRYLGLRWTFLEMLPSSISKLQNL 917

Query: 221  ETLEMPAGYIDHSPEGIWMMQKLMHL----NFDSITLPAPPKNYSSSLKNLIFISALHPS 276
            +TL++   YI+  P  IW +Q+L HL    ++ S  +P P      SL NL  +  L   
Sbjct: 918  QTLDLKHTYINILPNSIWKIQQLRHLYLSESYRSKFMPQP---RVGSLTNLQTLWGLFVD 974

Query: 277  SCTP--DILSRL-------------PTVQ---------------------TLRISGDLSH 300
              TP  D L RL             P+ Q                     TLR+  D   
Sbjct: 975  EETPVKDGLDRLVNLKKLGLTCRLMPSQQQAMLAQLEAVANWVLKLDHLHTLRLKSDDGE 1034

Query: 301  YHSG--VSKSLCELHKLECLKLVNGSKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPML 358
               G    K L  L KL  + L+   K   +V   ++ P SL  L+LS + L EDP+  L
Sbjct: 1035 NQPGDLDLKPLSGLEKLSSIYLLGRLKNPLVV---FESPESLSDLTLSGSGLTEDPLQKL 1091

Query: 359  ERLPRLQVMKLKRNSYFGRKLACVGSGGFPELQVL 393
            ++LP L++++L   SY G+ + C  SGGFP+L+VL
Sbjct: 1092 DKLPNLKILRLLAKSYMGKNMLC-SSGGFPQLRVL 1125

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225433944|ref|XP_002267359.1| PREDICTED: disease resistance RPP8-like protein 3-like [Vitis vinifera]

 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 135/455 (29%), Positives = 202/455 (44%), Gaps = 79/455 (17%)

Query: 11   VWRQIYSVMEL--PFHLKVYCIYLCVFCPSIEISTRQLCQLWIAEGFIP-----YNSEET 63
            +W    S+++   P H+K    Y  +F   I++  R+L  LW+AEG +        SE+ 
Sbjct: 581  LWSNTLSMIDRKCPLHMKRCLFYFGLFPQDIDVPARRLIALWVAEGLMQPEGENETSEDV 640

Query: 64   AEYYLKELIHRGFIQVSKRRAGGTIKACYVPSLVYYSLLLVAEKTRFVLM--PNKEEESL 121
            AE  L +LI +G +QV+K++  G +K C +P  +    L  A +T F+      + E SL
Sbjct: 641  AEICLIKLIAQGMVQVTKKKLNGDVKTCRLPDALQRHWLSKARQTTFLQFHTNTRSELSL 700

Query: 122  AT--VKRCFILEDLIEF-------------ISLEQSDMYLQSFLNHSSESDHLALIDCEN 166
            +T  V+R     D  +F              SL+    +  SFL+  ++       D  N
Sbjct: 701  STGLVRRLVDHLDKEDFSYGHIHGEYNRTLTSLKPRYQHALSFLSFDTQEGSKPGEDIGN 760

Query: 167  FCEN------FKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNL 220
            F         F  LRVL+       + P  +  L  L+YL L    L+ LP  I  L NL
Sbjct: 761  FLHRCISSSCFLLLRVLDLEHVFRPKLPETIGKLSRLRYLGLRWTFLEMLPSSISKLQNL 820

Query: 221  ETLEMPAGYIDHSPEGIWMMQKLMHL----NFDSITLPAPPKNYSSSLKNLIFISALHPS 276
            +TL++   YI+  P  IW +Q+L HL    ++ S  +P P      SL NL  +  L   
Sbjct: 821  QTLDLKHTYINILPNSIWKIQQLRHLYLSESYRSKFMPQP---RVGSLTNLQTLWGLFVD 877

Query: 277  SCTP--DILSRL-------------PTVQ---------------------TLRISGDLSH 300
              TP  D L RL             P+ Q                     TLR+  D   
Sbjct: 878  EETPVKDGLDRLVNLKKLGLTCRLMPSQQQAMLAQLEAVANWVLKLDHLHTLRLKSDDGE 937

Query: 301  YHSG--VSKSLCELHKLECLKLVNGSKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPML 358
               G    K L  L KL  + L+   K   +V   ++ P SL  L+LS + L EDP+  L
Sbjct: 938  NQPGDLDLKPLSGLEKLSSIYLLGRLKNPLVV---FESPESLSDLTLSGSGLTEDPLQKL 994

Query: 359  ERLPRLQVMKLKRNSYFGRKLACVGSGGFPELQVL 393
            ++LP L++++L   SY G+ + C  SGGFP+L+VL
Sbjct: 995  DKLPNLKILRLLAKSYMGKNMLC-SSGGFPQLRVL 1028

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225433948|ref|XP_002267553.1| PREDICTED: putative disease resistance protein At1g59780-like [Vitis vinifera]

 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 121/442 (27%), Positives = 202/442 (45%), Gaps = 75/442 (16%)

Query: 20  ELPFHLKVYCIYLCVFCPSIEISTRQLCQLWIAEGFIPYNS-----EETAEYYLKELIHR 74
           +LP ++K    Y  +F   ++I  R+L  LW+AEG +         E+ AE YL +LI +
Sbjct: 551 DLPLYMKRCLFYFGLFPKDLDIPARRLIMLWVAEGLVQPEGGNEAPEDVAERYLIKLIAQ 610

Query: 75  GFIQVSKRRAGGTIKACYVPSLVYYSLLLVAEKTRFVLMPNKEEESLAT----VKRCF-- 128
           G +QV++++  GT+K C +P ++    L   ++  F+    K    L+     ++R    
Sbjct: 611 GMVQVTQKKLDGTVKTCRLPYVLQQEWLAKTQEATFLQYHAKTRSELSPSTGLIRRLVDH 670

Query: 129 ILEDLIEF-----------ISLEQSDMYLQSFLNHSSESDHLALIDCENFCEN------F 171
           +  + + F            SL+     + SFL+  +        D  NF         F
Sbjct: 671 LDNEDVSFGHIHGDENTTSTSLKPHYQDVLSFLSFDAREGSKPGEDVGNFLHECISSSCF 730

Query: 172 KYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMPAGYID 231
             LRVL+       + P  L  L  L+Y+ L    L+ LP  I  L NL+TL++   YID
Sbjct: 731 LLLRVLDLEHVFRPKLPKQLGKLTRLRYIGLRWTFLQMLPSSISKLQNLQTLDLKHTYID 790

Query: 232 HSPEGIWMMQKLMHL----NFDSITLPAPPKNYSSSLKNL--IFISALHPSSCTPDILSR 285
             P  IW +Q+L HL    ++ S  +  P     +SL+ L  +F+    P     + L R
Sbjct: 791 TLPSSIWKVQQLRHLYLSESYRSKFMLRPRVGSLTSLQTLWGLFVDEETP---VKNGLDR 847

Query: 286 LPTVQTLRISGDLSHYHS--------GVSKSLCELHKLECLKLVNG-------------- 323
           L  ++ L ++  L+             VS  + +L+ L+ L+L +               
Sbjct: 848 LVNIRKLSLTCRLTPSQDEAMLQQLEAVSNWVLKLNHLQSLRLKSDDADNQPWDLDLKPL 907

Query: 324 ---SKLSRM----------VLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLK 370
              + LSR+          ++SE  FP SL  L+LS + L EDPM  L++LP L++++L 
Sbjct: 908 SGHANLSRVYLLGRLKNPSIVSE--FPESLTDLTLSGSRLTEDPMQTLDKLPNLKILRLL 965

Query: 371 RNSYFGRKLACVGSGGFPELQV 392
             SY G+++ C   GGFP+L++
Sbjct: 966 SKSYVGKEMLC-SLGGFPKLRI 986

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296081343|emb|CBI17689.3| unnamed protein product [Vitis vinifera]

 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 129/434 (29%), Positives = 198/434 (45%), Gaps = 64/434 (14%)

Query: 20   ELPFHLKVYCIYLCVFCPSIEISTRQLCQLWIAEGFIPYNSE-----ETAEYYLKELIHR 74
            +LP +++    Y  +F    EI  R+L  LW+AEG +    E     + A+ YL  LI +
Sbjct: 820  DLPLYMQRCLFYFSLFPQDFEIPARRLTVLWVAEGLVQAEDENETPEDVADRYLITLIGK 879

Query: 75   GFIQVSKRRAGGTIKACYVPSLV--YYSLLLVAEKTRFVLMPNKEEESLAT--------- 123
            G ++V+K +  G +K+C +P  +  Y+S   +      V    K E SL T         
Sbjct: 880  GMVRVTKNKLNGNVKSCLLPDALRRYWSSKALQATFLQVGTNTKSESSLGTGMIRRLTDH 939

Query: 124  VKRCFILEDLI----EFISLEQSDMYLQ--SFLNHSSESDHLALIDCENFCEN------F 171
            + +  +  D I    + IS     +Y +  SFL+  ++       D  NF          
Sbjct: 940  LDKGDVSFDHIHGDHKTISASVQPLYREVVSFLSFDTQEGSKPGEDIGNFLHRCISSSCL 999

Query: 172  KYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMPAGYID 231
              LRVL+  +    +FP  L  L  L+YL L    L  LP  +  L +L+ L++    I 
Sbjct: 1000 LLLRVLDLENVFKPKFPEALGKLTRLRYLGLRSTFLDVLPSFVNKLQSLQALDVKHTNIT 1059

Query: 232  HSPEGIWMMQKLMHLNFD----SITLPAPPKNYSSSLKNLIFISALHPSSCTPDILSRLP 287
              P  IW MQ+L  L  +    S  +P P    SS+L+ L+ +     +  T D L +  
Sbjct: 1060 TLPSPIWNMQQLRQLYLNERCHSKVMPQPSVGSSSTLRVLVGLFVDEETPVT-DGLDQFI 1118

Query: 288  TVQTLRISGDL-SHYHSGVSKSLCELHKLECLKL--------------------VN---- 322
             ++ L ++  L S     V + + +L+ LE L+L                    VN    
Sbjct: 1119 NLRKLGLTCHLPSSQQEAVVEWVQKLNNLESLRLKSIDEENQFWDLDLKPLAHHVNLSCL 1178

Query: 323  ---GSKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFGRKL 379
               G   +  V SE  FP SLI+L+LS +EL EDPM  L++LP L+V++   NSY G+ +
Sbjct: 1179 YLLGRLKNPSVGSE--FPHSLIELTLSGSELEEDPMQTLDKLPNLKVLRFLANSYLGKNM 1236

Query: 380  ACVGSGGFPELQVL 393
             C  SGGFP+LQVL
Sbjct: 1237 GC-SSGGFPQLQVL 1249

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745279|emb|CBI40359.3| unnamed protein product [Vitis vinifera]

 Score =  127 bits (320), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 123/437 (28%), Positives = 203/437 (46%), Gaps = 67/437 (15%)

Query: 17  SVMELPFHLKVYCIYLCVFCPSIEISTRQLCQLWIAEGFIPYNSEET----AEYYLKELI 72
           S  +LP++LK   +Y  +F    EI   +L +LW+AEGFI    +ET    AE Y+ ELI
Sbjct: 413 SYNDLPYYLKSCFLYCGIFPEDSEIKASKLIRLWLAEGFIQRRGKETLEDIAEDYMHELI 472

Query: 73  HRGFIQVSKRRAGGTIKACYVPSLVYYSLLLVAEKTRFV-LMPNKEEESLATVKRCFILE 131
           HR  IQV++RR  G +++C +  L+    +L A+  +F  +  N +     +V+R  I +
Sbjct: 473 HRSLIQVAERRVDGGVESCRMHDLLRDLAVLEAKDAKFFEVHENIDFTFPISVRRLVIHQ 532

Query: 132 DLI-EFISLEQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPG 190
           +L+ + IS    +  L+S ++ S  +   +        E+ K L VL  G    +  P  
Sbjct: 533 NLMKKNISKCLHNSQLRSLVSFSETTGKKSW---RYLQEHIKLLTVLELGKT--NMLPRD 587

Query: 191 LENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMPAGYIDHSPEGIWMMQKLMHLNFDS 250
           +     LK+L +N      LP  IC L+NL++L +   Y    P  IW +Q+L HL   +
Sbjct: 588 IGEFIHLKFLCINGHGRVTLPSSICRLVNLQSLNLGDHY-GSIPYSIWKLQQLRHLICWN 646

Query: 251 ITLPAPPKNYS--------SSLKNLIFISALHPSSCTPDILSRLPTVQTLRISGDLSHY- 301
             +    K             L NL  ++    S    D L +L  ++ L + G L+ Y 
Sbjct: 647 CKISGQSKTSKCVNGYLGVEQLTNLQTLALQGGSWLEGDGLGKLTQLRKLVLGGLLTPYL 706

Query: 302 HSGVSKSLCELHKLECL----------KLVN---GSKLSRMVLSEYQ------------- 335
             G  +S+ +L  L+ L          +L+N   G +  + V+ E               
Sbjct: 707 KKGFFESITKLTALQTLALGIEKYSKKRLLNHLVGLERQKNVIEEKTLFPGLVPFSCHAY 766

Query: 336 -------------------FPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFG 376
                              +PP+L++L L + EL +DPM +LE+LP L+ ++L  ++Y G
Sbjct: 767 LDVVNLIGKFEKLPEQFEFYPPNLLKLGLWDCELRDDPMMILEKLPSLRKLELGSDAYVG 826

Query: 377 RKLACVGSGGFPELQVL 393
           +K+ C  SGGF +L+ L
Sbjct: 827 KKMIC-SSGGFLQLESL 842

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495931|ref|XP_003635117.1| PREDICTED: probable disease resistance protein RDL6/RF9-like [Vitis vinifera]

 Score =  127 bits (320), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 129/434 (29%), Positives = 198/434 (45%), Gaps = 64/434 (14%)

Query: 20   ELPFHLKVYCIYLCVFCPSIEISTRQLCQLWIAEGFIPYNSE-----ETAEYYLKELIHR 74
            +LP +++    Y  +F    EI  R+L  LW+AEG +    E     + A+ YL  LI +
Sbjct: 867  DLPLYMQRCLFYFSLFPQDFEIPARRLTVLWVAEGLVQAEDENETPEDVADRYLITLIGK 926

Query: 75   GFIQVSKRRAGGTIKACYVPSLV--YYSLLLVAEKTRFVLMPNKEEESLAT--------- 123
            G ++V+K +  G +K+C +P  +  Y+S   +      V    K E SL T         
Sbjct: 927  GMVRVTKNKLNGNVKSCLLPDALRRYWSSKALQATFLQVGTNTKSESSLGTGMIRRLTDH 986

Query: 124  VKRCFILEDLI----EFISLEQSDMYLQ--SFLNHSSESDHLALIDCENFCEN------F 171
            + +  +  D I    + IS     +Y +  SFL+  ++       D  NF          
Sbjct: 987  LDKGDVSFDHIHGDHKTISASVQPLYREVVSFLSFDTQEGSKPGEDIGNFLHRCISSSCL 1046

Query: 172  KYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMPAGYID 231
              LRVL+  +    +FP  L  L  L+YL L    L  LP  +  L +L+ L++    I 
Sbjct: 1047 LLLRVLDLENVFKPKFPEALGKLTRLRYLGLRSTFLDVLPSFVNKLQSLQALDVKHTNIT 1106

Query: 232  HSPEGIWMMQKLMHLNFD----SITLPAPPKNYSSSLKNLIFISALHPSSCTPDILSRLP 287
              P  IW MQ+L  L  +    S  +P P    SS+L+ L+ +     +  T D L +  
Sbjct: 1107 TLPSPIWNMQQLRQLYLNERCHSKVMPQPSVGSSSTLRVLVGLFVDEETPVT-DGLDQFI 1165

Query: 288  TVQTLRISGDL-SHYHSGVSKSLCELHKLECLKL--------------------VN---- 322
             ++ L ++  L S     V + + +L+ LE L+L                    VN    
Sbjct: 1166 NLRKLGLTCHLPSSQQEAVVEWVQKLNNLESLRLKSIDEENQFWDLDLKPLAHHVNLSCL 1225

Query: 323  ---GSKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFGRKL 379
               G   +  V SE  FP SLI+L+LS +EL EDPM  L++LP L+V++   NSY G+ +
Sbjct: 1226 YLLGRLKNPSVGSE--FPHSLIELTLSGSELEEDPMQTLDKLPNLKVLRFLANSYLGKNM 1283

Query: 380  ACVGSGGFPELQVL 393
             C  SGGFP+LQVL
Sbjct: 1284 GC-SSGGFPQLQVL 1296

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	394
TAIR|locus:2176486	908	RPP8 "RECOGNITION OF PERONOSPO	0.170	0.073	0.391	4.1e-13
TAIR|locus:2075170	835	RPP13 "RECOGNITION OF PERONOSP	0.454	0.214	0.300	5.4e-13
TAIR|locus:504956182	1049	AT1G58848 [Arabidopsis thalian	0.154	0.058	0.467	8.2e-13
TAIR|locus:2826978	1049	AT1G59218 [Arabidopsis thalian	0.154	0.058	0.467	8.2e-13
TAIR|locus:2169523	901	AT5G35450 [Arabidopsis thalian	0.175	0.076	0.380	9.2e-13
TAIR|locus:2152536	908	AT5G48620 [Arabidopsis thalian	0.170	0.073	0.376	9.7e-13
TAIR|locus:504956483	847	AT3G46730 [Arabidopsis thalian	0.398	0.185	0.255	3.9e-11
TAIR|locus:504956184	1017	AT1G58807 "AT1G58807" [Arabido	0.157	0.060	0.460	6.3e-11
TAIR|locus:2827038	1017	AT1G59124 "AT1G59124" [Arabido	0.157	0.060	0.460	6.3e-11
TAIR|locus:2037639	907	AT1G58390 "AT1G58390" [Arabido	0.327	0.142	0.342	7.5e-11

TAIR|locus:2176486 RPP8 "RECOGNITION OF PERONOSPORA PARASITICA 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 139 (54.0 bits), Expect = 4.1e-13, Sum P(2) = 4.1e-13
 Identities = 27/69 (39%), Positives = 46/69 (66%)

Query:   325 KLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFGRKLACVGS 384
             ++S+ +  ++QFPP L+ L L    + EDPMP+LE+L  L+ ++L R ++ G ++ C   
Sbjct:   758 RMSK-IPDQHQFPPHLVHLFLIYCGMEEDPMPILEKLLHLKSVRLARKAFLGSRMVC-SK 815

Query:   385 GGFPELQVL 393
             GGFP+L V+
Sbjct:   816 GGFPQLCVI 824

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0043531 "ADP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=ISS

GO:0009416 "response to light stimulus" evidence=IMP

GO:0051607 "defense response to virus" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0051707 "response to other organism" evidence=IMP

TAIR|locus:2075170 RPP13 "RECOGNITION OF PERONOSPORA PARASITICA 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 169 (64.5 bits), Expect = 5.4e-13, Sum P(2) = 5.4e-13
 Identities = 58/193 (30%), Positives = 94/193 (48%)

Query:    17 SVMELPFHLKVYCIYLCVFCPSIEISTRQLCQLWIAEGFIPYNSE----ETAEYYLKELI 72
             S  EL    K+  +YL +F    EI   +L  L +AEGFI  + E    + A YY++ELI
Sbjct:   409 SFKELRHESKLCFLYLSIFPEDYEIDLEKLIHLLVAEGFIQGDEEMMMEDVARYYIEELI 468

Query:    73 HRGFIQVSKRRAGGTIKACYVPXXXXXXXXXXAEKTRFVLMPNKE--EESLATVKRCFIL 130
              R  ++ + RR  G + +C +           +++  FV + N    + S  T +R  + 
Sbjct:   469 DRSLLE-AVRRERGKVMSCRIHDLLRDVAIKKSKELNFVNVYNDHVAQHSSTTCRREVVH 527

Query:   131 EDLIEFISLEQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPG 190
                  + S ++ +  ++SFL +  E DHL  +D   F E  K LRVL++GS  L     G
Sbjct:   528 HQFKRYSSEKRKNKRMRSFL-YFGEFDHLVGLD---F-ETLKLLRVLDFGSLWLPFKING 582

Query:   191 LENLFLLKYLQLN 203
               +L  L+YL ++
Sbjct:   583 --DLIHLRYLGID 593

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0043531 "ADP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=TAS

GO:0009814 "defense response, incompatible interaction" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

TAIR|locus:504956182 AT1G58848 [Arabidopsis thaliana (taxid:3702)]

 Score = 146 (56.5 bits), Expect = 8.2e-13, Sum P(3) = 8.2e-13
 Identities = 29/62 (46%), Positives = 43/62 (69%)

Query:   333 EYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFGRKLACVGSGGFPELQV 392
             E  FP  L  L L +  L EDPMP+LE+L +L+ ++L+R S+ G+++ C  SGGFP+LQ 
Sbjct:   772 EQHFPSHLTTLYLQHCRLEEDPMPILEKLHQLKELELRRKSFSGKEMVC-SSGGFPQLQK 830

Query:   393 LT 394
             L+
Sbjct:   831 LS 832

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2826978 AT1G59218 [Arabidopsis thaliana (taxid:3702)]

 Score = 146 (56.5 bits), Expect = 8.2e-13, Sum P(3) = 8.2e-13
 Identities = 29/62 (46%), Positives = 43/62 (69%)

Query:   333 EYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFGRKLACVGSGGFPELQV 392
             E  FP  L  L L +  L EDPMP+LE+L +L+ ++L+R S+ G+++ C  SGGFP+LQ 
Sbjct:   772 EQHFPSHLTTLYLQHCRLEEDPMPILEKLHQLKELELRRKSFSGKEMVC-SSGGFPQLQK 830

Query:   393 LT 394
             L+
Sbjct:   831 LS 832

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2169523 AT5G35450 [Arabidopsis thaliana (taxid:3702)]

 Score = 139 (54.0 bits), Expect = 9.2e-13, Sum P(3) = 9.2e-13
 Identities = 27/71 (38%), Positives = 46/71 (64%)

Query:   323 GSKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFGRKLACV 382
             G  LS+ +  ++Q PP +  + L    + EDPMP+LE+L  L+ ++L+R ++ GR++ C 
Sbjct:   747 GVHLSK-IPDQHQLPPHIAHIYLLFCHMEEDPMPILEKLLHLKSVELRRKAFIGRRMVC- 804

Query:   383 GSGGFPELQVL 393
               GGFP+L+ L
Sbjct:   805 SKGGFPQLRAL 815

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2152536 AT5G48620 [Arabidopsis thaliana (taxid:3702)]

 Score = 132 (51.5 bits), Expect = 9.7e-13, Sum P(2) = 9.7e-13
 Identities = 26/69 (37%), Positives = 44/69 (63%)

Query:   325 KLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFGRKLACVGS 384
             ++S+ +  ++QFPP L  + L +  + EDPMP+LE+L  L+ + L   ++ GR++ C   
Sbjct:   758 RMSK-IPDQHQFPPHLAHIHLVHCVMKEDPMPILEKLLHLKSVALSYGAFIGRRVVC-SK 815

Query:   385 GGFPELQVL 393
             GGFP+L  L
Sbjct:   816 GGFPQLCAL 824

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:504956483 AT3G46730 [Arabidopsis thaliana (taxid:3702)]

 Score = 123 (48.4 bits), Expect = 3.9e-11, Sum P(3) = 3.9e-11
 Identities = 43/168 (25%), Positives = 78/168 (46%)

Query:    17 SVMELPFHLKVYCIYLCVFCPSIEISTRQLCQLWIAEGFIPYNSE----ETAEYYLKELI 72
             S  E+   LK+  +Y  VF    EI   +L  L +AEGFI  + E    + A  Y+ EL+
Sbjct:   409 SFKEMRHELKLCFLYFSVFPEDYEIKVEKLIHLLVAEGFIQEDEEMMMEDVARCYIDELV 468

Query:    73 HRGFIQVSKRRAGGTIKACYVPXXXXXXXXXXAEKTRFVLMPNKEEESLATVKRCFILED 132
              R  ++ ++R   G + +C +           A++  FV + N+++ S + + R  ++  
Sbjct:   469 DRSLVK-AERIERGKVMSCRIHDLLRDLAIKKAKELNFVNVYNEKQHS-SDICRREVVHH 526

Query:   133 LIE--FISLEQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLN 178
             L+   ++   + +  ++SFL    E      ++  N     K LRVLN
Sbjct:   527 LMNDYYLCDRRVNKRMRSFL-FIGERRGFGYVNTTNL--KLKLLRVLN 571

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:504956184 AT1G58807 "AT1G58807" [Arabidopsis thaliana (taxid:3702)]

 Score = 137 (53.3 bits), Expect = 6.3e-11, Sum P(3) = 6.3e-11
 Identities = 29/63 (46%), Positives = 42/63 (66%)

Query:   332 SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFGRKLACVGSGGFPELQ 391
             +E  FP  L  L L +  L EDPMP+LE+L +L+ ++L   S+ G+K+ C  SGGFP+LQ
Sbjct:   763 TEQHFPSHLTTLYLESCRLEEDPMPILEKLLQLKELELGFESFSGKKMVC-SSGGFPQLQ 821

Query:   392 VLT 394
              L+
Sbjct:   822 RLS 824

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2827038 AT1G59124 "AT1G59124" [Arabidopsis thaliana (taxid:3702)]

 Score = 137 (53.3 bits), Expect = 6.3e-11, Sum P(3) = 6.3e-11
 Identities = 29/63 (46%), Positives = 42/63 (66%)

Query:   332 SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFGRKLACVGSGGFPELQ 391
             +E  FP  L  L L +  L EDPMP+LE+L +L+ ++L   S+ G+K+ C  SGGFP+LQ
Sbjct:   763 TEQHFPSHLTTLYLESCRLEEDPMPILEKLLQLKELELGFESFSGKKMVC-SSGGFPQLQ 821

Query:   392 VLT 394
              L+
Sbjct:   822 RLS 824

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2037639 AT1G58390 "AT1G58390" [Arabidopsis thaliana (taxid:3702)]

 Score = 133 (51.9 bits), Expect = 7.5e-11, Sum P(3) = 7.5e-11
 Identities = 50/146 (34%), Positives = 72/146 (49%)

Query:   264 LKNLIFISALHPSS---C------TPDI-LSRLPTVQTLR--ISG--DLSH-YHSGV-SK 307
             L+ L++ S  H SS   C      T  I L+R+ + +TL   ISG  +L + Y  G  SK
Sbjct:   681 LETLVYFSTWHSSSKDLCGMTRLMTLAIRLTRVTSTETLSASISGLRNLEYLYIVGTHSK 740

Query:   308 SXXXXXXXXXXXXVNGSKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVM 367
                          +    L   +  +  FP  L  + LS   L EDPMP+LE+L  L+ +
Sbjct:   741 KMREEGIVLDFIHLKHLLLDLYMPRQQHFPSRLTFVKLSECGLEEDPMPILEKLLHLKGV 800

Query:   368 KLKRNSYFGRKLACVGSGGFPELQVL 393
              L + SY GR++ C G GGFP+L+ L
Sbjct:   801 ILLKGSYCGRRMVCSG-GGFPQLKKL 825

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	394
pfam00931	285	pfam00931, NB-ARC, NB-ARC domain	0.003

>gnl|CDD|216202 pfam00931, NB-ARC, NB-ARC domain

 Score = 38.8 bits (91), Expect = 0.003
 Identities = 19/42 (45%), Positives = 23/42 (54%)

Query: 16  YSVMELPFHLKVYCIYLCVFCPSIEISTRQLCQLWIAEGFIP 57
            S   LP HLK   +YL +F     I   QL +LWIAEGF+ 
Sbjct: 240 LSYDNLPMHLKRCFLYLALFPEDYNIRKEQLIKLWIAEGFVI 281

Length = 285

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	394
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	100.0
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.98
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.88
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.88
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.83
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.82
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.76
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.73
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.72
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.71
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.68
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.66
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.65
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.58
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.57
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.54
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.52
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.49
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.4
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.38
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.34
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.33
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.32
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.27
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.27
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.25
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.17
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.14
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.96
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.93
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.92
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.7
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.65
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.64
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.64
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	98.51
PLN03150	623	hypothetical protein; Provisional	98.49
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.41
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.38
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.36
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.36
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.33
PLN03150	623	hypothetical protein; Provisional	98.32
PRK15386	426	type III secretion protein GogB; Provisional	98.22
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.21
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.08
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.07
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.02
PRK15386	426	type III secretion protein GogB; Provisional	97.98
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.97
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.88
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.79
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.77
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.76
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.76
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.63
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.57
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.41
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.08
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.87
KOG4341	483	consensus F-box protein containing LRR [General fu	96.7
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.67
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.65
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.56
KOG4341	483	consensus F-box protein containing LRR [General fu	96.37
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.05
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.94
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.67
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.45
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.56
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.24
KOG1947	482	consensus Leucine rich repeat proteins, some prote	93.72
KOG0473	326	consensus Leucine-rich repeat protein [Function un	93.21
KOG0473	326	consensus Leucine-rich repeat protein [Function un	91.6
smart00370	26	LRR Leucine-rich repeats, outliers.	91.45
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	91.45
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	90.03
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	88.5
smart00370	26	LRR Leucine-rich repeats, outliers.	87.65
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	87.65
KOG3864	221	consensus Uncharacterized conserved protein [Funct	86.68
KOG1947	482	consensus Leucine rich repeat proteins, some prote	82.79

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=100.00  E-value=3.2e-45  Score=372.30  Aligned_cols=372  Identities=26%  Similarity=0.370  Sum_probs=275.1

Q ss_pred             CchhHHHHHHhcccCCCchhhHHHhccccccCCCceechHHHHHHHHhcCCCC-----CChHHHHHHHHHHHHhcCceee
Q 037494            5 GEAILTVWRQIYSVMELPFHLKVYCIYLCVFCPSIEISTRQLCQLWIAEGFIP-----YNSEETAEYYLKELIHRGFIQV   79 (394)
Q Consensus         5 ~~~i~~~lk~~~SY~~L~~~~k~cfl~~~~Fp~~~~i~~~~Li~~wia~gfi~-----~~~~~~~~~~l~~L~~~~ll~~   79 (394)
                      ++.|+++||  +|||+||.++|.||+|||+|||||+|++++||..||||||+.     ..+++.|+.|+++||+++|++.
T Consensus       394 ~~~i~~iLk--lSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~  471 (889)
T KOG4658|consen  394 EESILPILK--LSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIE  471 (889)
T ss_pred             hhhhHHhhh--ccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhh
Confidence            467999999  999999988999999999999999999999999999999996     7889999999999999999998


Q ss_pred             eecCCCCcEeEEEcCHHHHHHHHHHhc-----ccCcEEecCCCC--CC----CCceEEEEEEeCCcchhhccCCCCCccE
Q 037494           80 SKRRAGGTIKACYVPSLVYYSLLLVAE-----KTRFVLMPNKEE--ES----LATVKRCFILEDLIEFISLEQSDMYLQS  148 (394)
Q Consensus        80 ~~~~~~g~~~~~~mhdli~~l~~~~~~-----~~~~~~~~~~~~--~~----~~~~r~L~l~~~~~~~~~~~~~~~~lr~  148 (394)
                      ....  ++..+|+|||++|+||.++++     +++.+...+...  .+    +..+|++++..+....++.....+++++
T Consensus       472 ~~~~--~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~t  549 (889)
T KOG4658|consen  472 ERDE--GRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRT  549 (889)
T ss_pred             cccc--cceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccce
Confidence            7754  677899999999999999999     776544432111  11    6688999999888888888888889999


Q ss_pred             EEEecCCCccchhcch-hHHhccCCceeEEEcCCCC-CCCCcccccCcccccEEecCCCCCccccccccCCCCCcEEEcc
Q 037494          149 FLNHSSESDHLALIDC-ENFCENFKYLRVLNWGSAV-LDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMP  226 (394)
Q Consensus       149 L~l~~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~-~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~  226 (394)
                      |.+.++...   ...+ .+||..++.||+||+++|. +.++|++|+.|.+||||+++++.++.+|.++++|..|.+|++.
T Consensus       550 Lll~~n~~~---l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~  626 (889)
T KOG4658|consen  550 LLLQRNSDW---LLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLE  626 (889)
T ss_pred             EEEeecchh---hhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccc
Confidence            999998631   1123 6777999999999999877 7899999999999999999999999999999999999999999


Q ss_pred             -cCCccccchhhccCccCcEEEeeCCCCCCCCCCCCCCCCcCceeCccccC---CCcchhcCCCCCCC----eEEEeecC
Q 037494          227 -AGYIDHSPEGIWMMQKLMHLNFDSITLPAPPKNYSSSLKNLIFISALHPS---SCTPDILSRLPTVQ----TLRISGDL  298 (394)
Q Consensus       227 -~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~---~~~~~~l~~l~~L~----~L~l~~~~  298 (394)
                       +..+..+|.....|++||+|.+. ......-...++.+.+|++|....+.   ....+.+..+..|.    .+.+.++ 
T Consensus       627 ~~~~l~~~~~i~~~L~~Lr~L~l~-~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~-  704 (889)
T KOG4658|consen  627 VTGRLESIPGILLELQSLRVLRLP-RSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGC-  704 (889)
T ss_pred             cccccccccchhhhcccccEEEee-ccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhccc-
Confidence             75666666666669999999998 54311111123344444444333222   21112222222222    1111111 


Q ss_pred             CccccchhhhhcCCCCCcEEEecCC------------------------------CCCCccCC-CCCCCCCCceEEEEec
Q 037494          299 SHYHSGVSKSLCELHKLECLKLVNG------------------------------SKLSRMVL-SEYQFPPSLIQLSLSN  347 (394)
Q Consensus       299 ~~~~~~~~~~l~~~~~L~~L~l~~~------------------------------~~L~~L~p-~~~~~l~~L~~L~L~~  347 (394)
                        .....+.++..+.+|+.|.+.+|                              ..++.  + |... +++|+.|.+..
T Consensus       705 --~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~--l~~~~f-~~~L~~l~l~~  779 (889)
T KOG4658|consen  705 --SKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRD--LTWLLF-APHLTSLSLVS  779 (889)
T ss_pred             --ccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccc--cchhhc-cCcccEEEEec
Confidence              22233333444444444444442                              22222  3 5544 89999999999


Q ss_pred             ccCCCCCcccccCCCCCCeEEEecccccCceeEEeCCCCCcCCc
Q 037494          348 TELMEDPMPMLERLPRLQVMKLKRNSYFGRKLACVGSGGFPELQ  391 (394)
Q Consensus       348 ~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~fp~L~  391 (394)
                      |.....+++....+..++.+.+..+.+.+..+.+. .++||++.
T Consensus       780 ~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~-l~~l~~i~  822 (889)
T KOG4658|consen  780 CRLLEDIIPKLKALLELKELILPFNKLEGLRMLCS-LGGLPQLY  822 (889)
T ss_pred             ccccccCCCHHHHhhhcccEEecccccccceeeec-CCCCceeE
Confidence            98877888877777778877777777777765555 56666554

>PLN03210 Resistant to P

Probab=99.98  E-value=4.7e-31  Score=281.59  Aligned_cols=356  Identities=21%  Similarity=0.166  Sum_probs=223.0

Q ss_pred             CchhHHHHHHhcccCCCchh-hHHHhccccccCCCceechHHHHHHHHhcCCCCCChHHHHHHHHHHHHhcCceeeeecC
Q 037494            5 GEAILTVWRQIYSVMELPFH-LKVYCIYLCVFCPSIEISTRQLCQLWIAEGFIPYNSEETAEYYLKELIHRGFIQVSKRR   83 (394)
Q Consensus         5 ~~~i~~~lk~~~SY~~L~~~-~k~cfl~~~~Fp~~~~i~~~~Li~~wia~gfi~~~~~~~~~~~l~~L~~~~ll~~~~~~   83 (394)
                      +++|.++||  +||++|+++ .|.||+||||||+++.+   +.|..|.|++...      ++..++.|++++|+++..  
T Consensus       419 ~~~I~~~L~--~SYd~L~~~~~k~~Fl~ia~ff~~~~~---~~v~~~l~~~~~~------~~~~l~~L~~ksLi~~~~--  485 (1153)
T PLN03210        419 DGKIEKTLR--VSYDGLNNKKDKAIFRHIACLFNGEKV---NDIKLLLANSDLD------VNIGLKNLVDKSLIHVRE--  485 (1153)
T ss_pred             cHHHHHHHH--HhhhccCccchhhhhheehhhcCCCCH---HHHHHHHHhcCCC------chhChHHHHhcCCEEEcC--
Confidence            457999999  999999875 99999999999998653   4477777766541      344589999999998754  


Q ss_pred             CCCcEeEEEcCHHHHHHHHHHhcccC-------cEEecC------CCCCCCCceEEEEEEeCCcchhh----ccCCCCCc
Q 037494           84 AGGTIKACYVPSLVYYSLLLVAEKTR-------FVLMPN------KEEESLATVKRCFILEDLIEFIS----LEQSDMYL  146 (394)
Q Consensus        84 ~~g~~~~~~mhdli~~l~~~~~~~~~-------~~~~~~------~~~~~~~~~r~L~l~~~~~~~~~----~~~~~~~l  146 (394)
                           ..++|||++++||+++++++.       +.....      .......+++.+++.......+.    ....+.+|
T Consensus       486 -----~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L  560 (1153)
T PLN03210        486 -----DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNL  560 (1153)
T ss_pred             -----CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccc
Confidence                 248999999999999998763       110000      00000345666665533322211    11456666


Q ss_pred             cEEEEecCCCcc--------------------------chhcchhHHhccCCceeEEEcCCCCCCCCcccccCcccccEE
Q 037494          147 QSFLNHSSESDH--------------------------LALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYL  200 (394)
Q Consensus       147 r~L~l~~~~~~~--------------------------~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L  200 (394)
                      +.|.+..+....                          .....+|.. -...+|+.|+++++.++.+|..+..+++|++|
T Consensus       561 ~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~-f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L  639 (1153)
T PLN03210        561 LFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSN-FRPENLVKLQMQGSKLEKLWDGVHSLTGLRNI  639 (1153)
T ss_pred             cEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCc-CCccCCcEEECcCccccccccccccCCCCCEE
Confidence            666664332100                          000122322 13567777888887777777777888888888


Q ss_pred             ecCCC-CCccccccccCCCCCcEEEcc-cCCccccchhhccCccCcEEEeeCCCC-CCCCCCCCCCCCcCceeCccccC-
Q 037494          201 QLNIP-TLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITL-PAPPKNYSSSLKNLIFISALHPS-  276 (394)
Q Consensus       201 ~l~~~-~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~-~~~~p~~l~~l~~L~~L~~~~~~-  276 (394)
                      +++++ .++.+| .++.+++|++|+++ |..+..+|.+++.+++|+.|+++ +|. +..+|..+ ++++|+.|.+.+|. 
T Consensus       640 ~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~-~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~  716 (1153)
T PLN03210        640 DLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMS-RCENLEILPTGI-NLKSLYRLNLSGCSR  716 (1153)
T ss_pred             ECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCC-CCCCcCccCCcC-CCCCCCEEeCCCCCC
Confidence            88875 466676 57778888888888 76778888888888888888888 776 77777665 67888888887765 


Q ss_pred             -CCcchhcC-------------------CC-------------------------------CCCCeEEEeecCCccccch
Q 037494          277 -SCTPDILS-------------------RL-------------------------------PTVQTLRISGDLSHYHSGV  305 (394)
Q Consensus       277 -~~~~~~l~-------------------~l-------------------------------~~L~~L~l~~~~~~~~~~~  305 (394)
                       ...+....                   .+                               ++|+.|++++|.  ....+
T Consensus       717 L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~--~l~~l  794 (1153)
T PLN03210        717 LKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIP--SLVEL  794 (1153)
T ss_pred             ccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCC--Ccccc
Confidence             11111000                   01                               133344444443  34445


Q ss_pred             hhhhcCCCCCcEEEecCCCCCCccCC-CCCCCCCCceEEEEecccCCCCCcccccCCCCCCeEEEecccccCceeEEeCC
Q 037494          306 SKSLCELHKLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFGRKLACVGS  384 (394)
Q Consensus       306 ~~~l~~~~~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~  384 (394)
                      |.+++.+++|+.|++++|++++.+ | .+ . +++|+.|++++|... ..++.  ..++|+.|++++|.+.....  . .
T Consensus       795 P~si~~L~~L~~L~Ls~C~~L~~L-P~~~-~-L~sL~~L~Ls~c~~L-~~~p~--~~~nL~~L~Ls~n~i~~iP~--s-i  865 (1153)
T PLN03210        795 PSSIQNLHKLEHLEIENCINLETL-PTGI-N-LESLESLDLSGCSRL-RTFPD--ISTNISDLNLSRTGIEEVPW--W-I  865 (1153)
T ss_pred             ChhhhCCCCCCEEECCCCCCcCee-CCCC-C-ccccCEEECCCCCcc-ccccc--cccccCEeECCCCCCccChH--H-H
Confidence            666666666666666666666666 5 33 4 566666666666421 11111  23567777776666554321  1 2


Q ss_pred             CCCcCCccc
Q 037494          385 GGFPELQVL  393 (394)
Q Consensus       385 ~~fp~L~~L  393 (394)
                      ..+++|++|
T Consensus       866 ~~l~~L~~L  874 (1153)
T PLN03210        866 EKFSNLSFL  874 (1153)
T ss_pred             hcCCCCCEE
Confidence            346666655

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.88  E-value=2.8e-22  Score=213.34  Aligned_cols=238  Identities=21%  Similarity=0.235  Sum_probs=150.6

Q ss_pred             CCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCC-CCcccccCcccccEEecCCCCCc-cccccccCCCC
Q 037494          142 SDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLD-QFPPGLENLFLLKYLQLNIPTLK-CLPLLICTLLN  219 (394)
Q Consensus       142 ~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~-~lp~~i~~l~~L~~L~l~~~~l~-~lp~~l~~l~~  219 (394)
                      .+++||.|.+.++....    .++ . ..+++|++|++++|.+. .+|..++++++|++|++++|.+. .+|..++++++
T Consensus       116 ~l~~L~~L~Ls~n~l~~----~~p-~-~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~  189 (968)
T PLN00113        116 TSSSLRYLNLSNNNFTG----SIP-R-GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTS  189 (968)
T ss_pred             cCCCCCEEECcCCcccc----ccC-c-cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcC
Confidence            45555555555544431    111 1 34556666666666654 55666667777777777776654 56666677777


Q ss_pred             CcEEEcc-cCCccccchhhccCccCcEEEeeCCCC-CCCCCCCCCCCCcCceeCccccC--CCcchhcCCCCCCCeEEEe
Q 037494          220 LETLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITL-PAPPKNYSSSLKNLIFISALHPS--SCTPDILSRLPTVQTLRIS  295 (394)
Q Consensus       220 L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~-~~~~p~~l~~l~~L~~L~~~~~~--~~~~~~l~~l~~L~~L~l~  295 (394)
                      |++|+++ |.....+|..++++++|++|+++ +|. ...+|..++.+++|++|++.++.  ...+..++.+++|+.|+++
T Consensus       190 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~-~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~  268 (968)
T PLN00113        190 LEFLTLASNQLVGQIPRELGQMKSLKWIYLG-YNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLY  268 (968)
T ss_pred             CCeeeccCCCCcCcCChHHcCcCCccEEECc-CCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECc
Confidence            7777776 63334566667777777777777 666 34566666777777777776665  4556667777777777777


Q ss_pred             ecCCccccchhhhhcCCCCCcEEEecCCCCCC-ccCC-CCCCCCCCceEEEEecccCCCCCcccccCCCCCCeEEEeccc
Q 037494          296 GDLSHYHSGVSKSLCELHKLECLKLVNGSKLS-RMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNS  373 (394)
Q Consensus       296 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~-~L~p-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~  373 (394)
                      +|.  ..+.+|.++..+++|+.|++++ +++. .+ | ++.. +++|+.|++++|.+....+..++.+++|+.|++++|.
T Consensus       269 ~n~--l~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~-p~~~~~-l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~  343 (968)
T PLN00113        269 QNK--LSGPIPPSIFSLQKLISLDLSD-NSLSGEI-PELVIQ-LQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNK  343 (968)
T ss_pred             CCe--eeccCchhHhhccCcCEEECcC-CeeccCC-ChhHcC-CCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCC
Confidence            665  4555666667777777777766 3333 34 6 6777 7888888888887766666677788888888887777


Q ss_pred             ccCceeEEeCCCCCcCCccc
Q 037494          374 YFGRKLACVGSGGFPELQVL  393 (394)
Q Consensus       374 ~~~~~~~~~~~~~fp~L~~L  393 (394)
                      +.+.....  .+.+++|+.|
T Consensus       344 l~~~~p~~--l~~~~~L~~L  361 (968)
T PLN00113        344 FSGEIPKN--LGKHNNLTVL  361 (968)
T ss_pred             CcCcCChH--HhCCCCCcEE
Confidence            66543211  1345556554

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.88  E-value=2.3e-22  Score=214.04  Aligned_cols=247  Identities=20%  Similarity=0.219  Sum_probs=190.4

Q ss_pred             CCceEEEEEEeCCcchhhccCCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCC-CCcccccCcccccE
Q 037494          121 LATVKRCFILEDLIEFISLEQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLD-QFPPGLENLFLLKY  199 (394)
Q Consensus       121 ~~~~r~L~l~~~~~~~~~~~~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~-~lp~~i~~l~~L~~  199 (394)
                      ...+|+|.+..+..........+++|++|.+.++....    .++..+..+++|++|++++|.+. .+|..++++++|++
T Consensus       117 l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~----~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  192 (968)
T PLN00113        117 SSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSG----EIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEF  192 (968)
T ss_pred             CCCCCEEECcCCccccccCccccCCCCEEECcCCcccc----cCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCe
Confidence            45778888875554433333567889999999887752    34444488999999999999876 77888999999999


Q ss_pred             EecCCCCCc-cccccccCCCCCcEEEcc-cCCccccchhhccCccCcEEEeeCCCC-CCCCCCCCCCCCcCceeCccccC
Q 037494          200 LQLNIPTLK-CLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITL-PAPPKNYSSSLKNLIFISALHPS  276 (394)
Q Consensus       200 L~l~~~~l~-~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~-~~~~p~~l~~l~~L~~L~~~~~~  276 (394)
                      |++++|.+. .+|..++++.+|++|+++ |.....+|..++++++|++|+++ +|. ...+|..++++++|++|.+..+.
T Consensus       193 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~-~n~l~~~~p~~l~~l~~L~~L~L~~n~  271 (968)
T PLN00113        193 LTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLV-YNNLTGPIPSSLGNLKNLQYLFLYQNK  271 (968)
T ss_pred             eeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECc-CceeccccChhHhCCCCCCEEECcCCe
Confidence            999998776 578888999999999999 73445788889999999999998 887 45677888899999999988877


Q ss_pred             --CCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCccCC-CCCCCCCCceEEEEecccCCCC
Q 037494          277 --SCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTELMED  353 (394)
Q Consensus       277 --~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l~~~  353 (394)
                        ...+..+..+++|+.|++++|.  ..+.+|..+..+++|+.|+++++.-...+ | ++.. +++|+.|++++|.+...
T Consensus       272 l~~~~p~~l~~l~~L~~L~Ls~n~--l~~~~p~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~-l~~L~~L~L~~n~l~~~  347 (968)
T PLN00113        272 LSGPIPPSIFSLQKLISLDLSDNS--LSGEIPELVIQLQNLEILHLFSNNFTGKI-PVALTS-LPRLQVLQLWSNKFSGE  347 (968)
T ss_pred             eeccCchhHhhccCcCEEECcCCe--eccCCChhHcCCCCCcEEECCCCccCCcC-ChhHhc-CCCCCEEECcCCCCcCc
Confidence              5677788888899999998886  56677778888888888888873322334 6 6666 77788888887777666


Q ss_pred             CcccccCCCCCCeEEEecccccC
Q 037494          354 PMPMLERLPRLQVMKLKRNSYFG  376 (394)
Q Consensus       354 ~~~~l~~l~~L~~L~l~~n~~~~  376 (394)
                      .+..++.+++|+.|++++|.+.+
T Consensus       348 ~p~~l~~~~~L~~L~Ls~n~l~~  370 (968)
T PLN00113        348 IPKNLGKHNNLTVLDLSTNNLTG  370 (968)
T ss_pred             CChHHhCCCCCcEEECCCCeeEe
Confidence            66667777777777777766543

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.83  E-value=4.1e-23  Score=194.32  Aligned_cols=243  Identities=18%  Similarity=0.202  Sum_probs=179.2

Q ss_pred             CCceEEEEEEeCCcchhhcc-CCCCCccEEEEecCCCccchhcch-hHHhccCCceeEEEcCCCCCCCCcccccCccccc
Q 037494          121 LATVKRCFILEDLIEFISLE-QSDMYLQSFLNHSSESDHLALIDC-ENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLK  198 (394)
Q Consensus       121 ~~~~r~L~l~~~~~~~~~~~-~~~~~lr~L~l~~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~  198 (394)
                      ..++.||++.-+....+... ..++.||++.+.++....   ..+ +++ .+++.|.+|+|+.|++.+.|..+.+.+++-
T Consensus        54 lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKn---sGiP~di-F~l~dLt~lDLShNqL~EvP~~LE~AKn~i  129 (1255)
T KOG0444|consen   54 LQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKN---SGIPTDI-FRLKDLTILDLSHNQLREVPTNLEYAKNSI  129 (1255)
T ss_pred             HhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhcccccc---CCCCchh-cccccceeeecchhhhhhcchhhhhhcCcE
Confidence            34566777665665555444 778899999888887762   344 566 789999999999999999999999999999


Q ss_pred             EEecCCCCCccccccc-cCCCCCcEEEcc-cCCccccchhhccCccCcEEEeeCCCCCCCCC-CCCCCCCcCceeCcccc
Q 037494          199 YLQLNIPTLKCLPLLI-CTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITLPAPPK-NYSSSLKNLIFISALHP  275 (394)
Q Consensus       199 ~L~l~~~~l~~lp~~l-~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~~~~~  275 (394)
                      .|+|++|.|..+|..+ -+|..|-+|||+ | .++.+|+.+.++..|++|.++ +|++..+- ..+-.+++|++|.+++.
T Consensus       130 VLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~LqtL~Ls-~NPL~hfQLrQLPsmtsL~vLhms~T  207 (1255)
T KOG0444|consen  130 VLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLSMLQTLKLS-NNPLNHFQLRQLPSMTSLSVLHMSNT  207 (1255)
T ss_pred             EEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHhhhhhhhcC-CChhhHHHHhcCccchhhhhhhcccc
Confidence            9999999999999775 478889999999 7 999999999999999999999 88733221 23446778888888777


Q ss_pred             C---CCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCccCCCCCCCCCCceEEEEecccCCC
Q 037494          276 S---SCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVLSEYQFPPSLIQLSLSNTELME  352 (394)
Q Consensus       276 ~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p~~~~~l~~L~~L~L~~~~l~~  352 (394)
                      .   ..+|.++..+.+|+.++++.|   ....+|+.+.++++|+.|+|++ +.+++|....+. -.+|+.|+++.|+++ 
T Consensus       208 qRTl~N~Ptsld~l~NL~dvDlS~N---~Lp~vPecly~l~~LrrLNLS~-N~iteL~~~~~~-W~~lEtLNlSrNQLt-  281 (1255)
T KOG0444|consen  208 QRTLDNIPTSLDDLHNLRDVDLSEN---NLPIVPECLYKLRNLRRLNLSG-NKITELNMTEGE-WENLETLNLSRNQLT-  281 (1255)
T ss_pred             cchhhcCCCchhhhhhhhhcccccc---CCCcchHHHhhhhhhheeccCc-CceeeeeccHHH-Hhhhhhhccccchhc-
Confidence            6   678888888899999999888   6778888888889999999988 555555213333 345555555555542 


Q ss_pred             CCcccccCCCCCCeEEEeccccc
Q 037494          353 DPMPMLERLPRLQVMKLKRNSYF  375 (394)
Q Consensus       353 ~~~~~l~~l~~L~~L~l~~n~~~  375 (394)
                      ..+..+.+|+.|+.|.+.+|+..
T Consensus       282 ~LP~avcKL~kL~kLy~n~NkL~  304 (1255)
T KOG0444|consen  282 VLPDAVCKLTKLTKLYANNNKLT  304 (1255)
T ss_pred             cchHHHhhhHHHHHHHhccCccc
Confidence            22334555555555555444443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.82  E-value=1e-22  Score=191.69  Aligned_cols=245  Identities=17%  Similarity=0.165  Sum_probs=212.2

Q ss_pred             CCceEEEEEEeCCcchhhcc-CCCCCccEEEEecCCCccchhcch-hHHhccCCceeEEEcCCCCCC--CCcccccCccc
Q 037494          121 LATVKRCFILEDLIEFISLE-QSDMYLQSFLNHSSESDHLALIDC-ENFCENFKYLRVLNWGSAVLD--QFPPGLENLFL  196 (394)
Q Consensus       121 ~~~~r~L~l~~~~~~~~~~~-~~~~~lr~L~l~~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~--~lp~~i~~l~~  196 (394)
                      +..++.|.+.......+|+. ..+.+|..|.+..+...     .+ ..+ +.++.||.+.+..|.+.  .+|+.|..+..
T Consensus        31 Mt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~-----~vhGEL-s~Lp~LRsv~~R~N~LKnsGiP~diF~l~d  104 (1255)
T KOG0444|consen   31 MTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLI-----SVHGEL-SDLPRLRSVIVRDNNLKNSGIPTDIFRLKD  104 (1255)
T ss_pred             hhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhH-----hhhhhh-ccchhhHHHhhhccccccCCCCchhccccc
Confidence            56788888887777788877 77888999888888775     33 555 88999999999999976  88999999999


Q ss_pred             ccEEecCCCCCccccccccCCCCCcEEEcc-cCCccccchh-hccCccCcEEEeeCCCCCCCCCCCCCCCCcCceeCccc
Q 037494          197 LKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEG-IWMMQKLMHLNFDSITLPAPPKNYSSSLKNLIFISALH  274 (394)
Q Consensus       197 L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~  274 (394)
                      |..|+|++|.+++.|..+..-.++-+|+|+ | +|+++|.. +.+++.|-.|+++ +|.+..+|+.+..|..||+|.+++
T Consensus       105 Lt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfLDLS-~NrLe~LPPQ~RRL~~LqtL~Ls~  182 (1255)
T KOG0444|consen  105 LTILDLSHNQLREVPTNLEYAKNSIVLNLSYN-NIETIPNSLFINLTDLLFLDLS-NNRLEMLPPQIRRLSMLQTLKLSN  182 (1255)
T ss_pred             ceeeecchhhhhhcchhhhhhcCcEEEEcccC-ccccCCchHHHhhHhHhhhccc-cchhhhcCHHHHHHhhhhhhhcCC
Confidence            999999999999999999999999999999 8 99999975 5689999999999 999999999999999999999999


Q ss_pred             cC--CCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCccCC-CCCCCCCCceEEEEecccCC
Q 037494          275 PS--SCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTELM  351 (394)
Q Consensus       275 ~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l~  351 (394)
                      ++  ......+..|++|+.|.+++.. .....+|.++..+.+|..++++. ++|..+ | .+.. +++|+.|+|++|+++
T Consensus       183 NPL~hfQLrQLPsmtsL~vLhms~Tq-RTl~N~Ptsld~l~NL~dvDlS~-N~Lp~v-Pecly~-l~~LrrLNLS~N~it  258 (1255)
T KOG0444|consen  183 NPLNHFQLRQLPSMTSLSVLHMSNTQ-RTLDNIPTSLDDLHNLRDVDLSE-NNLPIV-PECLYK-LRNLRRLNLSGNKIT  258 (1255)
T ss_pred             ChhhHHHHhcCccchhhhhhhccccc-chhhcCCCchhhhhhhhhccccc-cCCCcc-hHHHhh-hhhhheeccCcCcee
Confidence            98  5566778888889999998775 24557889999999999999998 888888 9 8888 999999999999986


Q ss_pred             CCCcccccCCCCCCeEEEecccccCce
Q 037494          352 EDPMPMLERLPRLQVMKLKRNSYFGRK  378 (394)
Q Consensus       352 ~~~~~~l~~l~~L~~L~l~~n~~~~~~  378 (394)
                      ...+ ..+...+|+.|++|+|..+...
T Consensus       259 eL~~-~~~~W~~lEtLNlSrNQLt~LP  284 (1255)
T KOG0444|consen  259 ELNM-TEGEWENLETLNLSRNQLTVLP  284 (1255)
T ss_pred             eeec-cHHHHhhhhhhccccchhccch
Confidence            5443 3567789999999999877544

>PLN03210 Resistant to P

Probab=99.76  E-value=9.5e-18  Score=179.87  Aligned_cols=233  Identities=19%  Similarity=0.202  Sum_probs=153.3

Q ss_pred             CCceEEEEEEeCCcchhhccCCCCCccEEEEecCCCccchhcch-hHHhccCCceeEEEcCCCC-CCCCcccccCccccc
Q 037494          121 LATVKRCFILEDLIEFISLEQSDMYLQSFLNHSSESDHLALIDC-ENFCENFKYLRVLNWGSAV-LDQFPPGLENLFLLK  198 (394)
Q Consensus       121 ~~~~r~L~l~~~~~~~~~~~~~~~~lr~L~l~~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~-~~~lp~~i~~l~~L~  198 (394)
                      +.++|.|.+..+....+|......+|+.|.+.++...     .+ ..+ ..+++|++|+++++. +..+|. ++.+++|+
T Consensus       588 p~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~-----~L~~~~-~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le  660 (1153)
T PLN03210        588 PPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLE-----KLWDGV-HSLTGLRNIDLRGSKNLKEIPD-LSMATNLE  660 (1153)
T ss_pred             CcccEEEEecCCCCCCCCCcCCccCCcEEECcCcccc-----cccccc-ccCCCCCEEECCCCCCcCcCCc-cccCCccc
Confidence            4567777777555566666556677777777766554     23 223 667777777777665 445553 66677777


Q ss_pred             EEecCCC-CCccccccccCCCCCcEEEcc-cCCccccchhhccCccCcEEEeeCCCC---------------------CC
Q 037494          199 YLQLNIP-TLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITL---------------------PA  255 (394)
Q Consensus       199 ~L~l~~~-~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~---------------------~~  255 (394)
                      .|++++| .+..+|..++++++|+.|+++ |..+..+|..+ ++++|+.|+++ +|.                     +.
T Consensus       661 ~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Ls-gc~~L~~~p~~~~nL~~L~L~~n~i~  738 (1153)
T PLN03210        661 TLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLS-GCSRLKSFPDISTNISWLDLDETAIE  738 (1153)
T ss_pred             EEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCC-CCCCccccccccCCcCeeecCCCccc
Confidence            7777765 466677777777777777777 66667776654 56666666666 553                     23


Q ss_pred             CCCCCCCCC-------------------------------CcCceeCccccC--CCcchhcCCCCCCCeEEEeecCCccc
Q 037494          256 PPKNYSSSL-------------------------------KNLIFISALHPS--SCTPDILSRLPTVQTLRISGDLSHYH  302 (394)
Q Consensus       256 ~~p~~l~~l-------------------------------~~L~~L~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~  302 (394)
                      .+|..+ .+                               ++|+.|.+.+|.  ...|.+++.+++|+.|++++|.  ..
T Consensus       739 ~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~--~L  815 (1153)
T PLN03210        739 EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCI--NL  815 (1153)
T ss_pred             cccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCC--Cc
Confidence            333321 11                               245556666554  5577889999999999999987  67


Q ss_pred             cchhhhhcCCCCCcEEEecCCCCCCccCCCCCCCCCCceEEEEecccCCCCCcccccCCCCCCeEEEec
Q 037494          303 SGVSKSLCELHKLECLKLVNGSKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKR  371 (394)
Q Consensus       303 ~~~~~~l~~~~~L~~L~l~~~~~L~~L~p~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~  371 (394)
                      +.+|..+ .+++|+.|++++|+++..+ |.+   .++|+.|+|++|.+.. .+..+..+++|+.|++++
T Consensus       816 ~~LP~~~-~L~sL~~L~Ls~c~~L~~~-p~~---~~nL~~L~Ls~n~i~~-iP~si~~l~~L~~L~L~~  878 (1153)
T PLN03210        816 ETLPTGI-NLESLESLDLSGCSRLRTF-PDI---STNISDLNLSRTGIEE-VPWWIEKFSNLSFLDMNG  878 (1153)
T ss_pred             CeeCCCC-CccccCEEECCCCCccccc-ccc---ccccCEeECCCCCCcc-ChHHHhcCCCCCEEECCC
Confidence            7777665 6889999999998777766 421   3467777777776643 334566677777777755

syringae 6; Provisional

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.73  E-value=9.7e-19  Score=163.90  Aligned_cols=245  Identities=18%  Similarity=0.158  Sum_probs=145.2

Q ss_pred             CCceEEEEEEeCCcchhhcc-CCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCc-ccccCccccc
Q 037494          121 LATVKRCFILEDLIEFISLE-QSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFP-PGLENLFLLK  198 (394)
Q Consensus       121 ~~~~r~L~l~~~~~~~~~~~-~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~  198 (394)
                      ..++..+.+..+....+|.. ....++..|.+..+.+...++   .++ .-++.||+|||+.|.++++| +++..-.+++
T Consensus       101 l~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~s---e~L-~~l~alrslDLSrN~is~i~~~sfp~~~ni~  176 (873)
T KOG4194|consen  101 LPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTS---EEL-SALPALRSLDLSRNLISEIPKPSFPAKVNIK  176 (873)
T ss_pred             CCcceeeeeccchhhhcccccccccceeEEeeeccccccccH---HHH-HhHhhhhhhhhhhchhhcccCCCCCCCCCce
Confidence            44566666666666667766 444558888888877763222   333 66778888888888888776 5566667888


Q ss_pred             EEecCCCCCcccc-ccccCCCCCcEEEcc-cCCccccchh-hccCccCcEEEeeCCCCCCCC-CCCCCCCCcCceeCccc
Q 037494          199 YLQLNIPTLKCLP-LLICTLLNLETLEMP-AGYIDHSPEG-IWMMQKLMHLNFDSITLPAPP-KNYSSSLKNLIFISALH  274 (394)
Q Consensus       199 ~L~l~~~~l~~lp-~~l~~l~~L~~L~l~-~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~-p~~l~~l~~L~~L~~~~  274 (394)
                      +|+|++|.|+.+- ..+..+.+|.+|.|+ | .+..+|.- +.+|++|+.|++. .|.+..+ --.+..|.+|+.|.+..
T Consensus       177 ~L~La~N~It~l~~~~F~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~LdLn-rN~irive~ltFqgL~Sl~nlklqr  254 (873)
T KOG4194|consen  177 KLNLASNRITTLETGHFDSLNSLLTLKLSRN-RITTLPQRSFKRLPKLESLDLN-RNRIRIVEGLTFQGLPSLQNLKLQR  254 (873)
T ss_pred             EEeeccccccccccccccccchheeeecccC-cccccCHHHhhhcchhhhhhcc-ccceeeehhhhhcCchhhhhhhhhh
Confidence            8888888888764 346677888888888 7 88888864 4558888888888 7764433 23456667777776666


Q ss_pred             cC-CCc-chhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCC-----------------------CCCCcc
Q 037494          275 PS-SCT-PDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNG-----------------------SKLSRM  329 (394)
Q Consensus       275 ~~-~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-----------------------~~L~~L  329 (394)
                      ++ ... -..+-.+.+++.|++..|.  ....-..++-+++.|+.|+++.+                       +++.+|
T Consensus       255 N~I~kL~DG~Fy~l~kme~l~L~~N~--l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l  332 (873)
T KOG4194|consen  255 NDISKLDDGAFYGLEKMEHLNLETNR--LQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRL  332 (873)
T ss_pred             cCcccccCcceeeecccceeecccch--hhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccC
Confidence            65 111 1123334445555555543  22222233344444444444440                       444444


Q ss_pred             CC-CCCCCCCCceEEEEecccCCCCCcccccCCCCCCeEEEecccc
Q 037494          330 VL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSY  374 (394)
Q Consensus       330 ~p-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~~  374 (394)
                      .| .+.. ++.|+.|.|+.|.+....-..+..+.+|+.|+|++|.+
T Consensus       333 ~~~sf~~-L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~l  377 (873)
T KOG4194|consen  333 DEGSFRV-LSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNEL  377 (873)
T ss_pred             ChhHHHH-HHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeE
Confidence            22 4444 44555555555544333333344555555555555543

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.72  E-value=3.6e-18  Score=160.11  Aligned_cols=226  Identities=19%  Similarity=0.172  Sum_probs=150.3

Q ss_pred             CCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCcccccCcccccEEecCCCCCcccc-ccccCCCCCc
Q 037494          143 DMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLP-LLICTLLNLE  221 (394)
Q Consensus       143 ~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp-~~l~~l~~L~  221 (394)
                      .+..++|.+.++...   .+++..| .++++|+.+++.+|.++.+|...+...||+.|+|.+|.|.++. +++..++.|+
T Consensus        77 p~~t~~LdlsnNkl~---~id~~~f-~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alr  152 (873)
T KOG4194|consen   77 PSQTQTLDLSNNKLS---HIDFEFF-YNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALR  152 (873)
T ss_pred             ccceeeeeccccccc---cCcHHHH-hcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhh
Confidence            456677888777665   3333444 8888888888888888888877777777888888888777654 4466677778


Q ss_pred             EEEcc-cCCccccch-hhccCccCcEEEeeCCCCCCCCCC-CCCCCCcCceeCccccC--CCcchhcCCCCCCCeEEEee
Q 037494          222 TLEMP-AGYIDHSPE-GIWMMQKLMHLNFDSITLPAPPKN-YSSSLKNLIFISALHPS--SCTPDILSRLPTVQTLRISG  296 (394)
Q Consensus       222 ~L~l~-~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L~~~~~~--~~~~~~l~~l~~L~~L~l~~  296 (394)
                      +|||+ | .+.++|. ++..=.++++|+++ +|.+..+-. .+.++.+|.+|.++.+.  .-.+..+.++++|+.|++..
T Consensus       153 slDLSrN-~is~i~~~sfp~~~ni~~L~La-~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnr  230 (873)
T KOG4194|consen  153 SLDLSRN-LISEIPKPSFPAKVNIKKLNLA-SNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNR  230 (873)
T ss_pred             hhhhhhc-hhhcccCCCCCCCCCceEEeec-cccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccc
Confidence            88887 7 7777763 34455667777777 776555543 35666677777777666  22334556677777777666


Q ss_pred             cCCccccchhhhhcCCC------------------------CCcEEEecCCCCCCccCC-CCCCCCCCceEEEEecccCC
Q 037494          297 DLSHYHSGVSKSLCELH------------------------KLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTELM  351 (394)
Q Consensus       297 ~~~~~~~~~~~~l~~~~------------------------~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l~  351 (394)
                      |.  ....--..|..++                        +++.|+|.. +++..+.. |+.. ++.|+.|+++.|.+.
T Consensus       231 N~--irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~-N~l~~vn~g~lfg-Lt~L~~L~lS~NaI~  306 (873)
T KOG4194|consen  231 NR--IRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLET-NRLQAVNEGWLFG-LTSLEQLDLSYNAIQ  306 (873)
T ss_pred             cc--eeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeeccc-chhhhhhcccccc-cchhhhhccchhhhh
Confidence            64  1111112334444                        444444444 44444423 7777 888888888888887


Q ss_pred             CCCcccccCCCCCCeEEEecccccCce
Q 037494          352 EDPMPMLERLPRLQVMKLKRNSYFGRK  378 (394)
Q Consensus       352 ~~~~~~l~~l~~L~~L~l~~n~~~~~~  378 (394)
                      ...+..+...++|+.|+|+.|.+....
T Consensus       307 rih~d~WsftqkL~~LdLs~N~i~~l~  333 (873)
T KOG4194|consen  307 RIHIDSWSFTQKLKELDLSSNRITRLD  333 (873)
T ss_pred             eeecchhhhcccceeEeccccccccCC
Confidence            777788888888888888888766543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.71  E-value=1.6e-20  Score=168.50  Aligned_cols=222  Identities=20%  Similarity=0.201  Sum_probs=143.9

Q ss_pred             CCCCCccEEEEecCCCccchhcch-hHHhccCCceeEEEcCCCCCCCCcccccCcccccEEecCCCCCccccccccCCCC
Q 037494          141 QSDMYLQSFLNHSSESDHLALIDC-ENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLN  219 (394)
Q Consensus       141 ~~~~~lr~L~l~~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~  219 (394)
                      ..+..+.++.+.++...     .+ +++ +++..+..++.+.|++.++|+.++.+..|+.++.+.|.++++|++++.+..
T Consensus        65 ~nL~~l~vl~~~~n~l~-----~lp~ai-g~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~  138 (565)
T KOG0472|consen   65 KNLACLTVLNVHDNKLS-----QLPAAI-GELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLD  138 (565)
T ss_pred             hcccceeEEEeccchhh-----hCCHHH-HHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhh
Confidence            55666777777776664     34 444 777777777777777777777777777777777777777777777777777


Q ss_pred             CcEEEcc-cCCccccchhhccCccCcEEEeeCCCCCCCCCCCCCCCCcCceeCccccC-CCcchhcCCCCCCCeEEEeec
Q 037494          220 LETLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITLPAPPKNYSSSLKNLIFISALHPS-SCTPDILSRLPTVQTLRISGD  297 (394)
Q Consensus       220 L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~l~~~  297 (394)
                      |+.|+.. | ++.++|++++.+.+|..+++. ++....+|+..-+++.|+.|+...+- +..|++++.|.+|..|++..|
T Consensus       139 l~dl~~~~N-~i~slp~~~~~~~~l~~l~~~-~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~N  216 (565)
T KOG0472|consen  139 LEDLDATNN-QISSLPEDMVNLSKLSKLDLE-GNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRN  216 (565)
T ss_pred             hhhhhcccc-ccccCchHHHHHHHHHHhhcc-ccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhc
Confidence            7777777 6 777777777777666666666 66666666655456666666655554 666666666666666666666


Q ss_pred             CCccccchhhhhcCCCCCcEEEecCCCCCCccCC--CCCCCCCCceEEEEecccCCCCCcccccCCCCCCeEEEeccccc
Q 037494          298 LSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVL--SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYF  375 (394)
Q Consensus       298 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p--~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~  375 (394)
                      +   ...+| +|.+++.|.+|+++. ++++.+ |  ..+. ++++..||+++|+++. .+..+..+.+|.+|++++|.++
T Consensus       217 k---i~~lP-ef~gcs~L~Elh~g~-N~i~~l-pae~~~~-L~~l~vLDLRdNklke-~Pde~clLrsL~rLDlSNN~is  288 (565)
T KOG0472|consen  217 K---IRFLP-EFPGCSLLKELHVGE-NQIEML-PAEHLKH-LNSLLVLDLRDNKLKE-VPDEICLLRSLERLDLSNNDIS  288 (565)
T ss_pred             c---cccCC-CCCccHHHHHHHhcc-cHHHhh-HHHHhcc-cccceeeecccccccc-CchHHHHhhhhhhhcccCCccc
Confidence            3   33344 555566666666554 555555 5  2334 6666666666666533 2344555666666666666555


Q ss_pred             Cce
Q 037494          376 GRK  378 (394)
Q Consensus       376 ~~~  378 (394)
                      +..
T Consensus       289 ~Lp  291 (565)
T KOG0472|consen  289 SLP  291 (565)
T ss_pred             cCC
Confidence            544

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.68  E-value=7.4e-20  Score=164.33  Aligned_cols=219  Identities=21%  Similarity=0.226  Sum_probs=193.7

Q ss_pred             ccEEEEecCCCccchhcch-hHHhccCCceeEEEcCCCCCCCCcccccCcccccEEecCCCCCccccccccCCCCCcEEE
Q 037494          146 LQSFLNHSSESDHLALIDC-ENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLE  224 (394)
Q Consensus       146 lr~L~l~~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~  224 (394)
                      +..+.+..+...     .+ +++ .++..|.+|++..|.+.++|++++.+..++.++.++|++.++|+.++.+.+|..|+
T Consensus        47 l~~lils~N~l~-----~l~~dl-~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~  120 (565)
T KOG0472|consen   47 LQKLILSHNDLE-----VLREDL-KNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLD  120 (565)
T ss_pred             hhhhhhccCchh-----hccHhh-hcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhh
Confidence            455566666554     33 777 89999999999999999999999999999999999999999999999999999999


Q ss_pred             cc-cCCccccchhhccCccCcEEEeeCCCCCCCCCCCCCCCCcCceeCccccC-CCcchhcCCCCCCCeEEEeecCCccc
Q 037494          225 MP-AGYIDHSPEGIWMMQKLMHLNFDSITLPAPPKNYSSSLKNLIFISALHPS-SCTPDILSRLPTVQTLRISGDLSHYH  302 (394)
Q Consensus       225 l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~  302 (394)
                      .+ + .+.++|++++.+-.|..++.. +|....+|++++++.+|..|.+.++. ...++..-.++.|++|+...|   ..
T Consensus       121 ~s~n-~~~el~~~i~~~~~l~dl~~~-~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N---~L  195 (565)
T KOG0472|consen  121 CSSN-ELKELPDSIGRLLDLEDLDAT-NNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSN---LL  195 (565)
T ss_pred             cccc-ceeecCchHHHHhhhhhhhcc-ccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchh---hh
Confidence            99 8 899999999999999999999 99999999999999999999888887 556655555999999998877   78


Q ss_pred             cchhhhhcCCCCCcEEEecCCCCCCccCCCCCCCCCCceEEEEecccCCCCCcccccCCCCCCeEEEecccccCce
Q 037494          303 SGVSKSLCELHKLECLKLVNGSKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFGRK  378 (394)
Q Consensus       303 ~~~~~~l~~~~~L~~L~l~~~~~L~~L~p~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~  378 (394)
                      +.+|+.++.+.+|..|++.. +.+..+ |.|.. +..|++|++..|++...+.....+++++..|++..|++....
T Consensus       196 ~tlP~~lg~l~~L~~LyL~~-Nki~~l-Pef~g-cs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~P  268 (565)
T KOG0472|consen  196 ETLPPELGGLESLELLYLRR-NKIRFL-PEFPG-CSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVP  268 (565)
T ss_pred             hcCChhhcchhhhHHHHhhh-cccccC-CCCCc-cHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCc
Confidence            89999999999999999998 788888 87777 899999999999987666666779999999999999887654

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.66  E-value=1e-18  Score=139.90  Aligned_cols=155  Identities=19%  Similarity=0.236  Sum_probs=98.8

Q ss_pred             ccCCceeEEEcCCCCCCCCcccccCcccccEEecCCCCCccccccccCCCCCcEEEcc-cCCccccchhhccCccCcEEE
Q 037494          169 ENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLN  247 (394)
Q Consensus       169 ~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~  247 (394)
                      -.+.+...|-++.|+++.+|+.|..+.+|+.|++.+|.++++|..++.++.|+.|++. + .+..+|.++|.++.|+.|+
T Consensus        30 f~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~levld  108 (264)
T KOG0617|consen   30 FNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALEVLD  108 (264)
T ss_pred             cchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchh-hhhcCccccCCCchhhhhh
Confidence            4455566666666666666666666667777766666666666666666666666666 6 6666666666666666666


Q ss_pred             eeCCCC--CCCCCCCCCCCCcCceeCccccC-CCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCC
Q 037494          248 FDSITL--PAPPKNYSSSLKNLIFISALHPS-SCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGS  324 (394)
Q Consensus       248 l~~~~~--~~~~p~~l~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~  324 (394)
                      +. .+.  ...+|..+-.++.|+.|.+.++. ...|.+++++++|+.|.+..+   ..-.+|..++.+..|+.|++.+ +
T Consensus       109 lt-ynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdn---dll~lpkeig~lt~lrelhiqg-n  183 (264)
T KOG0617|consen  109 LT-YNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDN---DLLSLPKEIGDLTRLRELHIQG-N  183 (264)
T ss_pred             cc-ccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccC---chhhCcHHHHHHHHHHHHhccc-c
Confidence            66 554  34455555555566666666665 556666666666666666665   3445566666666666666665 5


Q ss_pred             CCCcc
Q 037494          325 KLSRM  329 (394)
Q Consensus       325 ~L~~L  329 (394)
                      .|..+
T Consensus       184 rl~vl  188 (264)
T KOG0617|consen  184 RLTVL  188 (264)
T ss_pred             eeeec
Confidence            55555

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.65  E-value=1.3e-18  Score=139.33  Aligned_cols=165  Identities=18%  Similarity=0.226  Sum_probs=107.8

Q ss_pred             hhhccCCCCCccEEEEecCCCccchhcch-hHHhccCCceeEEEcCCCCCCCCcccccCcccccEEecCCCCCccccccc
Q 037494          136 FISLEQSDMYLQSFLNHSSESDHLALIDC-ENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLI  214 (394)
Q Consensus       136 ~~~~~~~~~~lr~L~l~~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~l  214 (394)
                      +++....++++..|.++.+...     .+ |.+ ..+++|++|++.+|+++++|.+++.++.||.|++.-|++..+|.++
T Consensus        25 ~~~gLf~~s~ITrLtLSHNKl~-----~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgf   98 (264)
T KOG0617|consen   25 ELPGLFNMSNITRLTLSHNKLT-----VVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGF   98 (264)
T ss_pred             hcccccchhhhhhhhcccCcee-----ecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCcccc
Confidence            3344455566666666666554     22 445 6677777777777777777777777777777777667777777777


Q ss_pred             cCCCCCcEEEcc-cCCc--cccchhhccCccCcEEEeeCCCCCCCCCCCCCCCCcCceeCccccC-CCcchhcCCCCCCC
Q 037494          215 CTLLNLETLEMP-AGYI--DHSPEGIWMMQKLMHLNFDSITLPAPPKNYSSSLKNLIFISALHPS-SCTPDILSRLPTVQ  290 (394)
Q Consensus       215 ~~l~~L~~L~l~-~~~l--~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~  290 (394)
                      |.++.|++||+. + ++  ..+|..+..|+.|+.|.++ ++....+|+.+|++++||.|.+.++. ...|.+++.++.|+
T Consensus        99 gs~p~levldltyn-nl~e~~lpgnff~m~tlralyl~-dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lr  176 (264)
T KOG0617|consen   99 GSFPALEVLDLTYN-NLNENSLPGNFFYMTTLRALYLG-DNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLR  176 (264)
T ss_pred             CCCchhhhhhcccc-ccccccCCcchhHHHHHHHHHhc-CCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHH
Confidence            777777777776 4 33  3466666667777777777 66666667777777777777776666 66667777777777


Q ss_pred             eEEEeecCCccccchhhhhcC
Q 037494          291 TLRISGDLSHYHSGVSKSLCE  311 (394)
Q Consensus       291 ~L~l~~~~~~~~~~~~~~l~~  311 (394)
                      +|+|.++   -...+|..++.
T Consensus       177 elhiqgn---rl~vlppel~~  194 (264)
T KOG0617|consen  177 ELHIQGN---RLTVLPPELAN  194 (264)
T ss_pred             HHhcccc---eeeecChhhhh
Confidence            7777666   34445554443

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.58  E-value=1.4e-16  Score=156.68  Aligned_cols=239  Identities=18%  Similarity=0.220  Sum_probs=154.7

Q ss_pred             ceEEEEEEeCCcchhhccCCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCcccccCcccccEEec
Q 037494          123 TVKRCFILEDLIEFISLEQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQL  202 (394)
Q Consensus       123 ~~r~L~l~~~~~~~~~~~~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l  202 (394)
                      ..++|....+.........--.++..+.+..+...     .+|++...+.+|+.++...|.+..+|..+...+.|++|..
T Consensus       220 ~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~-----~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~  294 (1081)
T KOG0618|consen  220 SLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLS-----NLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSA  294 (1081)
T ss_pred             chheeeeccCcceeeccccccccceeeecchhhhh-----cchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHh
Confidence            44555554333332222244556777777776665     4566668888888888888888888888888888888888


Q ss_pred             CCCCCccccccccCCCCCcEEEcc-cCCccccchhhcc-Cc-cCcEEEeeCCCCCCCCCCCC-CCCCcCceeCccccC--
Q 037494          203 NIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWM-MQ-KLMHLNFDSITLPAPPKNYS-SSLKNLIFISALHPS--  276 (394)
Q Consensus       203 ~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~-l~-~L~~L~l~~~~~~~~~p~~l-~~l~~L~~L~~~~~~--  276 (394)
                      ..|.++.+|+....+..|++|+|. + .+..+|+.+.. +. +|+.|+.+ .+.+...|..= ..+..|+.|.+.++.  
T Consensus       295 ~~nel~yip~~le~~~sL~tLdL~~N-~L~~lp~~~l~v~~~~l~~ln~s-~n~l~~lp~~~e~~~~~Lq~LylanN~Lt  372 (1081)
T KOG0618|consen  295 AYNELEYIPPFLEGLKSLRTLDLQSN-NLPSLPDNFLAVLNASLNTLNVS-SNKLSTLPSYEENNHAALQELYLANNHLT  372 (1081)
T ss_pred             hhhhhhhCCCcccccceeeeeeehhc-cccccchHHHhhhhHHHHHHhhh-hccccccccccchhhHHHHHHHHhcCccc
Confidence            888888888888888888888888 7 88888874332 22 24555555 44444444211 134456666666665  


Q ss_pred             CCcchhcCCCCCCCeEEEeecCCccccchh-hhhcCCCCCcEEEecCC----------------------CCCCccCCCC
Q 037494          277 SCTPDILSRLPTVQTLRISGDLSHYHSGVS-KSLCELHKLECLKLVNG----------------------SKLSRMVLSE  333 (394)
Q Consensus       277 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~l~~~~~L~~L~l~~~----------------------~~L~~L~p~~  333 (394)
                      ....+-+..+++||.|++++|.   ...+| ..+.++..|+.|+|+|+                      +++..+ |.+
T Consensus       373 d~c~p~l~~~~hLKVLhLsyNr---L~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~f-Pe~  448 (1081)
T KOG0618|consen  373 DSCFPVLVNFKHLKVLHLSYNR---LNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSF-PEL  448 (1081)
T ss_pred             ccchhhhccccceeeeeecccc---cccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeec-hhh
Confidence            4455566666777777777763   33344 34556666666666661                      333333 544


Q ss_pred             CCCCCCceEEEEecccCCCCCcccccCCCCCCeEEEeccc
Q 037494          334 YQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNS  373 (394)
Q Consensus       334 ~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~  373 (394)
                      .. ++.|+.+|++.|+++...++..-.-|+|++|++++|.
T Consensus       449 ~~-l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  449 AQ-LPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             hh-cCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence            45 6778888888887766555554444778888887775

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.57  E-value=6.4e-15  Score=149.09  Aligned_cols=180  Identities=18%  Similarity=0.232  Sum_probs=90.8

Q ss_pred             eeEEEcCCCCCCCCcccccCcccccEEecCCCCCccccccccCCCCCcEEEcc-cCCccccchhhccCccCcEEEeeCCC
Q 037494          174 LRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLNFDSIT  252 (394)
Q Consensus       174 L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~  252 (394)
                      |+.|++++|.+..+|..+.  .+|++|++++|.+..+|..+.  .+|++|+++ | .+..+|..+.  ++|+.|+++ +|
T Consensus       243 L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~lp--~sL~~L~Ls-~N  314 (754)
T PRK15370        243 IQEMELSINRITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDN-SIRTLPAHLP--SGITHLNVQ-SN  314 (754)
T ss_pred             ccEEECcCCccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCC-ccccCcccch--hhHHHHHhc-CC
Confidence            4444444444444443332  234444444444444443332  244444444 4 4444443221  234444444 44


Q ss_pred             CCCCCCCCCCCCCcCceeCccccC-CCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCccCC
Q 037494          253 LPAPPKNYSSSLKNLIFISALHPS-SCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVL  331 (394)
Q Consensus       253 ~~~~~p~~l~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p  331 (394)
                      .+..+|..+  .++|+.|.+.+|. ...+..+.  ++|+.|++++|.   ...+|..+  .+.|+.|+|++ ++|..+ |
T Consensus       315 ~Lt~LP~~l--~~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~---L~~LP~~l--p~~L~~LdLs~-N~Lt~L-P  383 (754)
T PRK15370        315 SLTALPETL--PPGLKTLEAGENALTSLPASLP--PELQVLDVSKNQ---ITVLPETL--PPTITTLDVSR-NALTNL-P  383 (754)
T ss_pred             ccccCCccc--cccceeccccCCccccCChhhc--CcccEEECCCCC---CCcCChhh--cCCcCEEECCC-CcCCCC-C
Confidence            444444322  1456666665555 33343332  467777777663   33445444  24677777776 556666 5


Q ss_pred             -CCCCCCCCceEEEEecccCCCCCc---ccccCCCCCCeEEEeccccc
Q 037494          332 -SEYQFPPSLIQLSLSNTELMEDPM---PMLERLPRLQVMKLKRNSYF  375 (394)
Q Consensus       332 -~~~~~l~~L~~L~L~~~~l~~~~~---~~l~~l~~L~~L~l~~n~~~  375 (394)
                       .+   ..+|+.|++++|++...+.   ...+.++++..|++.+|.++
T Consensus       384 ~~l---~~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        384 ENL---PAALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             HhH---HHHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence             44   2357777777777653221   12234577888888777753

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.54  E-value=1.8e-14  Score=145.87  Aligned_cols=221  Identities=18%  Similarity=0.212  Sum_probs=162.8

Q ss_pred             ceEEEEEEeCCcchhhccCCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCcccccCcccccEEec
Q 037494          123 TVKRCFILEDLIEFISLEQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQL  202 (394)
Q Consensus       123 ~~r~L~l~~~~~~~~~~~~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l  202 (394)
                      +...+.+.......+|... .+.++.|.+.++...     .++..+  .++|++|++++|.++.+|..+.  .+|+.|++
T Consensus       179 ~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~Lt-----sLP~~l--~~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~L  248 (754)
T PRK15370        179 NKTELRLKILGLTTIPACI-PEQITTLILDNNELK-----SLPENL--QGNIKTLYANSNQLTSIPATLP--DTIQEMEL  248 (754)
T ss_pred             CceEEEeCCCCcCcCCccc-ccCCcEEEecCCCCC-----cCChhh--ccCCCEEECCCCccccCChhhh--ccccEEEC
Confidence            3456666644555555432 357889999888776     343221  2589999999999998887654  47999999


Q ss_pred             CCCCCccccccccCCCCCcEEEcc-cCCccccchhhccCccCcEEEeeCCCCCCCCCCCCCCCCcCceeCccccC-CCcc
Q 037494          203 NIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITLPAPPKNYSSSLKNLIFISALHPS-SCTP  280 (394)
Q Consensus       203 ~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~-~~~~  280 (394)
                      ++|.+..+|..+.  .+|+.|+++ | .+..+|..+.  ++|+.|+++ +|.+..+|..+.  ++|+.|++.+|. ...+
T Consensus       249 s~N~L~~LP~~l~--s~L~~L~Ls~N-~L~~LP~~l~--~sL~~L~Ls-~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP  320 (754)
T PRK15370        249 SINRITELPERLP--SALQSLDLFHN-KISCLPENLP--EELRYLSVY-DNSIRTLPAHLP--SGITHLNVQSNSLTALP  320 (754)
T ss_pred             cCCccCcCChhHh--CCCCEEECcCC-ccCccccccC--CCCcEEECC-CCccccCcccch--hhHHHHHhcCCccccCC
Confidence            9999999988764  489999999 7 8888887654  589999999 988888886553  478888888877 4444


Q ss_pred             hhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCccCC-CCCCCCCCceEEEEecccCCCCCccccc
Q 037494          281 DILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLE  359 (394)
Q Consensus       281 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l~~~~~~~l~  359 (394)
                      ..+.  ++|+.|.+.+|.   ...+|..+.  ++|+.|++++ +++..+ | .+   +++|+.|+|++|++...+ +.+.
T Consensus       321 ~~l~--~sL~~L~Ls~N~---Lt~LP~~l~--~sL~~L~Ls~-N~L~~L-P~~l---p~~L~~LdLs~N~Lt~LP-~~l~  387 (754)
T PRK15370        321 ETLP--PGLKTLEAGENA---LTSLPASLP--PELQVLDVSK-NQITVL-PETL---PPTITTLDVSRNALTNLP-ENLP  387 (754)
T ss_pred             cccc--ccceeccccCCc---cccCChhhc--CcccEEECCC-CCCCcC-Chhh---cCCcCEEECCCCcCCCCC-HhHH
Confidence            4333  689999999884   445666553  6899999998 678877 7 55   468999999999986433 2332


Q ss_pred             CCCCCCeEEEecccccC
Q 037494          360 RLPRLQVMKLKRNSYFG  376 (394)
Q Consensus       360 ~l~~L~~L~l~~n~~~~  376 (394)
                        ++|+.|++++|.+..
T Consensus       388 --~sL~~LdLs~N~L~~  402 (754)
T PRK15370        388 --AALQIMQASRNNLVR  402 (754)
T ss_pred             --HHHHHHhhccCCccc
Confidence              368999998888764

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.52  E-value=3.7e-16  Score=153.87  Aligned_cols=216  Identities=21%  Similarity=0.215  Sum_probs=141.7

Q ss_pred             cCCceeEEEcCCCCCCCCcccccCcccccEEecCCCCCccccccccCCCCCcEEEcc-cCCccccchhhccCccCcEEEe
Q 037494          170 NFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLNF  248 (394)
Q Consensus       170 ~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l  248 (394)
                      .-.+|++++++.+.++.+|+.++.+.+|+.++..+|.+..+|..+....+|+.|++. | .++.+|+...++++|++|++
T Consensus       239 ~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLdL  317 (1081)
T KOG0618|consen  239 VPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDL  317 (1081)
T ss_pred             ccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhh-hhhhCCCcccccceeeeeee
Confidence            345666777777777777766777777777777777777777666667777777666 6 66777766666777777777


Q ss_pred             eCCCCCCCCCCCCC-CCC-cCceeCccccCCCcchhc--CCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCC
Q 037494          249 DSITLPAPPKNYSS-SLK-NLIFISALHPSSCTPDIL--SRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGS  324 (394)
Q Consensus       249 ~~~~~~~~~p~~l~-~l~-~L~~L~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~  324 (394)
                      . .+.+..+|+.+- .+. +|+.|+.+.+........  ..++.|+.|.+.+|.  ..+...+.+.++++|+.|+|+. +
T Consensus       318 ~-~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~--Ltd~c~p~l~~~~hLKVLhLsy-N  393 (1081)
T KOG0618|consen  318 Q-SNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNH--LTDSCFPVLVNFKHLKVLHLSY-N  393 (1081)
T ss_pred             h-hccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCc--ccccchhhhccccceeeeeecc-c
Confidence            7 666666665321 111 244444443331111111  224557788888887  6677677888999999999998 7


Q ss_pred             CCCccCC--CCCCCCCCceEEEEecccCCCCC---------------------cccccCCCCCCeEEEecccccCceeEE
Q 037494          325 KLSRMVL--SEYQFPPSLIQLSLSNTELMEDP---------------------MPMLERLPRLQVMKLKRNSYFGRKLAC  381 (394)
Q Consensus       325 ~L~~L~p--~~~~~l~~L~~L~L~~~~l~~~~---------------------~~~l~~l~~L~~L~l~~n~~~~~~~~~  381 (394)
                      .|..+ |  .+.+ +..|++|+|++|+++..+                     .|.+..++.|+.++++.|.++...+..
T Consensus       394 rL~~f-pas~~~k-le~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~  471 (1081)
T KOG0618|consen  394 RLNSF-PASKLRK-LEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCNNLSEVTLPE  471 (1081)
T ss_pred             ccccC-CHHHHhc-hHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEecccchhhhhhhhh
Confidence            78888 7  6666 788888888888765322                     245677888999999888876544332


Q ss_pred             eCCCCCcCCcccC
Q 037494          382 VGSGGFPELQVLT  394 (394)
Q Consensus       382 ~~~~~fp~L~~L~  394 (394)
                      .  ..-|+|++|+
T Consensus       472 ~--~p~p~LkyLd  482 (1081)
T KOG0618|consen  472 A--LPSPNLKYLD  482 (1081)
T ss_pred             h--CCCcccceee
Confidence            2  1115677664

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.49  E-value=2e-13  Score=137.65  Aligned_cols=221  Identities=18%  Similarity=0.115  Sum_probs=131.7

Q ss_pred             CCceEEEEEEeCCcchhhccCCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCccccc--------
Q 037494          121 LATVKRCFILEDLIEFISLEQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLE--------  192 (394)
Q Consensus       121 ~~~~r~L~l~~~~~~~~~~~~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~~i~--------  192 (394)
                      +..++.|.+..+....+|.  ..++|+.|.+.+|....     +|..   .++|+.|++++|.+..+|....        
T Consensus       221 ~~~L~~L~L~~N~Lt~LP~--lp~~Lk~LdLs~N~Lts-----LP~l---p~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls  290 (788)
T PRK15387        221 PAHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTS-----LPVL---PPGLLELSIFSNPLTHLPALPSGLCKLWIF  290 (788)
T ss_pred             hcCCCEEEccCCcCCCCCC--CCCCCcEEEecCCccCc-----ccCc---ccccceeeccCCchhhhhhchhhcCEEECc
Confidence            3456788888666666654  35788888888886652     2221   2355555555555554443211        


Q ss_pred             ---------CcccccEEecCCCCCccccccccCCCCCcEEEcc-cCCccccchhhccCccCcEEEeeCCCCCCCCCCCCC
Q 037494          193 ---------NLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITLPAPPKNYSS  262 (394)
Q Consensus       193 ---------~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~  262 (394)
                               .+++|++|++++|.++.+|...   .+|+.|+++ | .+..+|..   ..+|+.|+++ +|.+..+|... 
T Consensus       291 ~N~Lt~LP~~p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~N-~L~~LP~l---p~~Lq~LdLS-~N~Ls~LP~lp-  361 (788)
T PRK15387        291 GNQLTSLPVLPPGLQELSVSDNQLASLPALP---SELCKLWAYNN-QLTSLPTL---PSGLQELSVS-DNQLASLPTLP-  361 (788)
T ss_pred             CCccccccccccccceeECCCCccccCCCCc---ccccccccccC-cccccccc---ccccceEecC-CCccCCCCCCC-
Confidence                     1234444455444444444311   234444444 4 44444421   1367777777 77766666532 


Q ss_pred             CCCcCceeCccccC-CCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCccCCCCCCCCCCce
Q 037494          263 SLKNLIFISALHPS-SCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVLSEYQFPPSLI  341 (394)
Q Consensus       263 ~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p~~~~~l~~L~  341 (394)
                        .+|+.|.+.++. ..++..   ..+|+.|++++|.   ...+|..   .++|+.|++++ +.+..+ |.+   +.+|+
T Consensus       362 --~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~---Lt~LP~l---~s~L~~LdLS~-N~LssI-P~l---~~~L~  425 (788)
T PRK15387        362 --SELYKLWAYNNRLTSLPAL---PSGLKELIVSGNR---LTSLPVL---PSELKELMVSG-NRLTSL-PML---PSGLL  425 (788)
T ss_pred             --cccceehhhccccccCccc---ccccceEEecCCc---ccCCCCc---ccCCCEEEccC-CcCCCC-Ccc---hhhhh
Confidence              345566666555 333321   2467888888874   3344432   35788888888 667777 621   34688


Q ss_pred             EEEEecccCCCCCcccccCCCCCCeEEEecccccCc
Q 037494          342 QLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFGR  377 (394)
Q Consensus       342 ~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~  377 (394)
                      .|++++|+++. .+..++++++|+.|++++|.+++.
T Consensus       426 ~L~Ls~NqLt~-LP~sl~~L~~L~~LdLs~N~Ls~~  460 (788)
T PRK15387        426 SLSVYRNQLTR-LPESLIHLSSETTVNLEGNPLSER  460 (788)
T ss_pred             hhhhccCcccc-cChHHhhccCCCeEECCCCCCCch
Confidence            89999999863 445688899999999999988764

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.40  E-value=3.2e-12  Score=129.08  Aligned_cols=214  Identities=18%  Similarity=0.100  Sum_probs=123.6

Q ss_pred             eEEEEEEeCCcchhhccCCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCcccccCcccccEEecC
Q 037494          124 VKRCFILEDLIEFISLEQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLN  203 (394)
Q Consensus       124 ~r~L~l~~~~~~~~~~~~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~  203 (394)
                      -..|.+..+....+|... ..+++.|.+.++...     .+|.   ..++|++|++++|.++.+|..   ..+|+.|+++
T Consensus       203 ~~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~Lt-----~LP~---lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls  270 (788)
T PRK15387        203 NAVLNVGESGLTTLPDCL-PAHITTLVIPDNNLT-----SLPA---LPPELRTLEVSGNQLTSLPVL---PPGLLELSIF  270 (788)
T ss_pred             CcEEEcCCCCCCcCCcch-hcCCCEEEccCCcCC-----CCCC---CCCCCcEEEecCCccCcccCc---ccccceeecc
Confidence            345566655555666542 247999999988776     3443   358899999999999988853   3577888888


Q ss_pred             CCCCccccccccCCCCCcEEEcc-cCCccccchhhccCccCcEEEeeCCCCCCCCCCCCCCCCcCceeCccccC-CCcch
Q 037494          204 IPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITLPAPPKNYSSSLKNLIFISALHPS-SCTPD  281 (394)
Q Consensus       204 ~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~-~~~~~  281 (394)
                      +|.+..+|..   ..+|+.|+++ | .+..+|..   +++|+.|+++ +|.+..+|...   .+|+.|.+.+|. ..++.
T Consensus       271 ~N~L~~Lp~l---p~~L~~L~Ls~N-~Lt~LP~~---p~~L~~LdLS-~N~L~~Lp~lp---~~L~~L~Ls~N~L~~LP~  339 (788)
T PRK15387        271 SNPLTHLPAL---PSGLCKLWIFGN-QLTSLPVL---PPGLQELSVS-DNQLASLPALP---SELCKLWAYNNQLTSLPT  339 (788)
T ss_pred             CCchhhhhhc---hhhcCEEECcCC-cccccccc---ccccceeECC-CCccccCCCCc---ccccccccccCccccccc
Confidence            8888877753   2456677777 7 77777652   4667777777 77766655422   234444444443 22211


Q ss_pred             hcCCCCCCCeEEEeecCCc-----------------cccchhhhhcCCCCCcEEEecCCCCCCccCCCCCCCCCCceEEE
Q 037494          282 ILSRLPTVQTLRISGDLSH-----------------YHSGVSKSLCELHKLECLKLVNGSKLSRMVLSEYQFPPSLIQLS  344 (394)
Q Consensus       282 ~l~~l~~L~~L~l~~~~~~-----------------~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p~~~~~l~~L~~L~  344 (394)
                       +  ..+|+.|++++|.-.                 ....+|..   ..+|+.|++++ +.+..+ |..   +++|+.|+
T Consensus       340 -l--p~~Lq~LdLS~N~Ls~LP~lp~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~-N~Lt~L-P~l---~s~L~~Ld  408 (788)
T PRK15387        340 -L--PSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPAL---PSGLKELIVSG-NRLTSL-PVL---PSELKELM  408 (788)
T ss_pred             -c--ccccceEecCCCccCCCCCCCcccceehhhccccccCccc---ccccceEEecC-CcccCC-CCc---ccCCCEEE
Confidence             1  124555555554300                 11122221   13455555555 344444 411   34566666


Q ss_pred             EecccCCCCCcccccCCCCCCeEEEeccccc
Q 037494          345 LSNTELMEDPMPMLERLPRLQVMKLKRNSYF  375 (394)
Q Consensus       345 L~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~  375 (394)
                      +++|++...  |.+  ..+|+.|++++|.++
T Consensus       409 LS~N~LssI--P~l--~~~L~~L~Ls~NqLt  435 (788)
T PRK15387        409 VSGNRLTSL--PML--PSGLLSLSVYRNQLT  435 (788)
T ss_pred             ccCCcCCCC--Ccc--hhhhhhhhhccCccc
Confidence            666665432  111  235666677666655

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.38  E-value=3.3e-14  Score=128.02  Aligned_cols=232  Identities=19%  Similarity=0.136  Sum_probs=149.5

Q ss_pred             CccEEEEecCCCccchhcch-hHHhccCCceeEEEcCCCCCCCC-cccccCcccccEEecCC-CCCcccccc-ccCCCCC
Q 037494          145 YLQSFLNHSSESDHLALIDC-ENFCENFKYLRVLNWGSAVLDQF-PPGLENLFLLKYLQLNI-PTLKCLPLL-ICTLLNL  220 (394)
Q Consensus       145 ~lr~L~l~~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~-~~l~~lp~~-l~~l~~L  220 (394)
                      ....+.+..|.+.     .+ +..|+.++.||.|||+.|.|+.+ |+++..+..|..|-+-+ |+|+.+|+. +++|..|
T Consensus        68 ~tveirLdqN~I~-----~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~sl  142 (498)
T KOG4237|consen   68 ETVEIRLDQNQIS-----SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSL  142 (498)
T ss_pred             cceEEEeccCCcc-----cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHH
Confidence            3555667777775     34 45558999999999999998866 68888888887776666 789999865 6778888


Q ss_pred             cEEEcc-cCCccccc-hhhccCccCcEEEeeCCCCCCCCCC-CCCCCCcCceeCccccC--------------CCcchhc
Q 037494          221 ETLEMP-AGYIDHSP-EGIWMMQKLMHLNFDSITLPAPPKN-YSSSLKNLIFISALHPS--------------SCTPDIL  283 (394)
Q Consensus       221 ~~L~l~-~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L~~~~~~--------------~~~~~~l  283 (394)
                      +.|.+. + .+.-++ ..+..|++|..|.+. ++....++. ++..+.+++++.+..+.              ...+.++
T Consensus       143 qrLllNan-~i~Cir~~al~dL~~l~lLsly-Dn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~iet  220 (498)
T KOG4237|consen  143 QRLLLNAN-HINCIRQDALRDLPSLSLLSLY-DNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIET  220 (498)
T ss_pred             HHHhcChh-hhcchhHHHHHHhhhcchhccc-chhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhc
Confidence            888888 7 666555 457788888888888 777666665 46677777777654433              0011111


Q ss_pred             CCCCC----------------------CCeE---EEeecCCccccchh-hhhcCCCCCcEEEecCCCCCCccCC-CCCCC
Q 037494          284 SRLPT----------------------VQTL---RISGDLSHYHSGVS-KSLCELHKLECLKLVNGSKLSRMVL-SEYQF  336 (394)
Q Consensus       284 ~~l~~----------------------L~~L---~l~~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~L~~L~p-~~~~~  336 (394)
                      +....                      ++.+   -.+.+.  .....| ..|..+++|+.|++++ +.+..+.+ ||.. 
T Consensus       221 sgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~--~d~~cP~~cf~~L~~L~~lnlsn-N~i~~i~~~aFe~-  296 (498)
T KOG4237|consen  221 SGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDF--PDSICPAKCFKKLPNLRKLNLSN-NKITRIEDGAFEG-  296 (498)
T ss_pred             ccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccC--cCCcChHHHHhhcccceEeccCC-Cccchhhhhhhcc-
Confidence            11100                      0000   000000  111122 3466777888888877 66777655 7777 


Q ss_pred             CCCceEEEEecccCCCCCcccccCCCCCCeEEEecccccCceeEEeCCCCCcCCcc
Q 037494          337 PPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFGRKLACVGSGGFPELQV  392 (394)
Q Consensus       337 l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~fp~L~~  392 (394)
                      +..+++|.|..|++....-..+.++..|+.|+|++|.++-..     +++|..+.+
T Consensus       297 ~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~-----~~aF~~~~~  347 (498)
T KOG4237|consen  297 AAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVA-----PGAFQTLFS  347 (498)
T ss_pred             hhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEe-----cccccccce
Confidence            777777777777765544455677777777777777665433     445554443

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.34  E-value=2.1e-13  Score=127.00  Aligned_cols=230  Identities=17%  Similarity=0.125  Sum_probs=111.0

Q ss_pred             CCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCC-------CcccccCcccccEEecCCCCCc-ccccccc
Q 037494          144 MYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQ-------FPPGLENLFLLKYLQLNIPTLK-CLPLLIC  215 (394)
Q Consensus       144 ~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~-------lp~~i~~l~~L~~L~l~~~~l~-~lp~~l~  215 (394)
                      .+++.+.+.++.........+...+...+.++.++++++.+..       ++..+..+.+|+.|++++|.+. ..+..+.
T Consensus        23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~  102 (319)
T cd00116          23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE  102 (319)
T ss_pred             hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence            3355555555554321112233333555556666665555432       1233444556666666665554 2222332


Q ss_pred             CCC---CCcEEEcc-cCCcc-----ccchhhccC-ccCcEEEeeCCCCCC-----CCCCCCCCCCcCceeCccccC-C--
Q 037494          216 TLL---NLETLEMP-AGYID-----HSPEGIWMM-QKLMHLNFDSITLPA-----PPKNYSSSLKNLIFISALHPS-S--  277 (394)
Q Consensus       216 ~l~---~L~~L~l~-~~~l~-----~lp~~i~~l-~~L~~L~l~~~~~~~-----~~p~~l~~l~~L~~L~~~~~~-~--  277 (394)
                      .+.   +|++|+++ | .+.     .+...+..+ ++|+.|+++ +|...     .++..+..+++|++|++..+. .  
T Consensus       103 ~l~~~~~L~~L~ls~~-~~~~~~~~~l~~~l~~~~~~L~~L~L~-~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  180 (319)
T cd00116         103 SLLRSSSLQELKLNNN-GLGDRGLRLLAKGLKDLPPALEKLVLG-RNRLEGASCEALAKALRANRDLKELNLANNGIGDA  180 (319)
T ss_pred             HHhccCcccEEEeeCC-ccchHHHHHHHHHHHhCCCCceEEEcC-CCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchH
Confidence            232   26666666 5 333     122234444 566666666 55533     122223444556666665554 1  


Q ss_pred             ---CcchhcCCCCCCCeEEEeecCC--ccccchhhhhcCCCCCcEEEecCCCCCCccC----C-C-CCCCCCCceEEEEe
Q 037494          278 ---CTPDILSRLPTVQTLRISGDLS--HYHSGVSKSLCELHKLECLKLVNGSKLSRMV----L-S-EYQFPPSLIQLSLS  346 (394)
Q Consensus       278 ---~~~~~l~~l~~L~~L~l~~~~~--~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~----p-~-~~~~l~~L~~L~L~  346 (394)
                         ..+..+..+++|+.|++++|.-  .....+...+..+++|+.|+++++ .+....    . . ... .+.|++|+++
T Consensus       181 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n-~l~~~~~~~l~~~~~~~-~~~L~~L~l~  258 (319)
T cd00116         181 GIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN-NLTDAGAAALASALLSP-NISLLTLSLS  258 (319)
T ss_pred             HHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCC-cCchHHHHHHHHHHhcc-CCCceEEEcc
Confidence               1223344455667777766641  111233445555666777777662 233210    0 0 011 3567777777


Q ss_pred             cccCCCCCc----ccccCCCCCCeEEEecccccCc
Q 037494          347 NTELMEDPM----PMLERLPRLQVMKLKRNSYFGR  377 (394)
Q Consensus       347 ~~~l~~~~~----~~l~~l~~L~~L~l~~n~~~~~  377 (394)
                      +|.++....    ..+..+++|+++++++|.+...
T Consensus       259 ~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~  293 (319)
T cd00116         259 CNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE  293 (319)
T ss_pred             CCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence            776642221    2234456677777766666543

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.33  E-value=6.2e-13  Score=123.77  Aligned_cols=226  Identities=18%  Similarity=0.119  Sum_probs=155.8

Q ss_pred             CCCCCccEEEEecCCCcc-chh-cchhHHhccCCceeEEEcCCCCCC-CCcccccCccc---ccEEecCCCCCc-----c
Q 037494          141 QSDMYLQSFLNHSSESDH-LAL-IDCENFCENFKYLRVLNWGSAVLD-QFPPGLENLFL---LKYLQLNIPTLK-----C  209 (394)
Q Consensus       141 ~~~~~lr~L~l~~~~~~~-~~~-~~l~~~~~~l~~L~~L~l~~~~~~-~lp~~i~~l~~---L~~L~l~~~~l~-----~  209 (394)
                      ...+.++.+.+.++.... ... ..+...+..+++|+.|++++|.+. ..+..+..+.+   |++|++++|.+.     .
T Consensus        48 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~  127 (319)
T cd00116          48 RPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRL  127 (319)
T ss_pred             hhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHH
Confidence            456678888887766541 011 122445588999999999999986 44455555555   999999999876     2


Q ss_pred             ccccccCC-CCCcEEEcc-cCCcc-----ccchhhccCccCcEEEeeCCCCCC-----CCCCCCCCCCcCceeCccccC-
Q 037494          210 LPLLICTL-LNLETLEMP-AGYID-----HSPEGIWMMQKLMHLNFDSITLPA-----PPKNYSSSLKNLIFISALHPS-  276 (394)
Q Consensus       210 lp~~l~~l-~~L~~L~l~-~~~l~-----~lp~~i~~l~~L~~L~l~~~~~~~-----~~p~~l~~l~~L~~L~~~~~~-  276 (394)
                      +...+..+ ++|+.|+++ | .+.     .++..+..+++|++|+++ +|.+.     .++..+..+++|+.|++.+|. 
T Consensus       128 l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~~~~L~~L~l~-~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i  205 (319)
T cd00116         128 LAKGLKDLPPALEKLVLGRN-RLEGASCEALAKALRANRDLKELNLA-NNGIGDAGIRALAEGLKANCNLEVLDLNNNGL  205 (319)
T ss_pred             HHHHHHhCCCCceEEEcCCC-cCCchHHHHHHHHHHhCCCcCEEECc-CCCCchHHHHHHHHHHHhCCCCCEEeccCCcc
Confidence            33455667 899999999 8 655     345566778899999999 88744     233334556799999998886 


Q ss_pred             -----CCcchhcCCCCCCCeEEEeecCCccccchhhhhc-----CCCCCcEEEecCCCCCC-----ccCC-CCCCCCCCc
Q 037494          277 -----SCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLC-----ELHKLECLKLVNGSKLS-----RMVL-SEYQFPPSL  340 (394)
Q Consensus       277 -----~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~L~-----~L~p-~~~~~l~~L  340 (394)
                           ......+..+++|+.|++++|.  ..+.....+.     ..+.|+.|++++| .+.     .+ + .+.. +++|
T Consensus       206 ~~~~~~~l~~~~~~~~~L~~L~ls~n~--l~~~~~~~l~~~~~~~~~~L~~L~l~~n-~i~~~~~~~l-~~~~~~-~~~L  280 (319)
T cd00116         206 TDEGASALAETLASLKSLEVLNLGDNN--LTDAGAAALASALLSPNISLLTLSLSCN-DITDDGAKDL-AEVLAE-KESL  280 (319)
T ss_pred             ChHHHHHHHHHhcccCCCCEEecCCCc--CchHHHHHHHHHHhccCCCceEEEccCC-CCCcHHHHHH-HHHHhc-CCCc
Confidence                 2234557788999999999987  3332222221     2479999999983 443     22 2 4445 6899


Q ss_pred             eEEEEecccCCCCCccc----ccCC-CCCCeEEEeccc
Q 037494          341 IQLSLSNTELMEDPMPM----LERL-PRLQVMKLKRNS  373 (394)
Q Consensus       341 ~~L~L~~~~l~~~~~~~----l~~l-~~L~~L~l~~n~  373 (394)
                      +.+++++|.+.......    +... +.|+.|++.+|.
T Consensus       281 ~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (319)
T cd00116         281 LELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS  318 (319)
T ss_pred             cEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence            99999999987654332    3334 689999986654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.32  E-value=8.2e-14  Score=125.55  Aligned_cols=203  Identities=16%  Similarity=0.139  Sum_probs=143.2

Q ss_pred             ceeEEEcCCCCCCCCc-ccccCcccccEEecCCCCCccc-cccccCCCCCcEEEcc-cCCccccch-hhccCccCcEEEe
Q 037494          173 YLRVLNWGSAVLDQFP-PGLENLFLLKYLQLNIPTLKCL-PLLICTLLNLETLEMP-AGYIDHSPE-GIWMMQKLMHLNF  248 (394)
Q Consensus       173 ~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~l~-~~~l~~lp~-~i~~l~~L~~L~l  248 (394)
                      .-..++|+.|+|+.+| .+|+.+++||.|+|++|.|+.+ |..+..+.+|..|-+. ++.|..+|. .++.|.+|+.|.+
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll  147 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL  147 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence            3467889999999987 7888999999999999999875 5667788888887776 559999996 4788999999988


Q ss_pred             eCCCCCCCCC-CCCCCCCcCceeCccccC-CCcch-hcCCCCCCCeEEEeecC---Cc-------cccchhhhhcCCCCC
Q 037494          249 DSITLPAPPK-NYSSSLKNLIFISALHPS-SCTPD-ILSRLPTVQTLRISGDL---SH-------YHSGVSKSLCELHKL  315 (394)
Q Consensus       249 ~~~~~~~~~p-~~l~~l~~L~~L~~~~~~-~~~~~-~l~~l~~L~~L~l~~~~---~~-------~~~~~~~~l~~~~~L  315 (394)
                      . -|.+.-++ ..+..|++|..|.++++. ..... .+..+..++.+.+..++   ..       .....+..++.+...
T Consensus       148 N-an~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~  226 (498)
T KOG4237|consen  148 N-ANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV  226 (498)
T ss_pred             C-hhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence            8 77755544 447888899899988887 33333 56677777777766654   00       111112222222222


Q ss_pred             cEEEecCC-----------CCCCcc-------------CC--CCCCCCCCceEEEEecccCCCCCcccccCCCCCCeEEE
Q 037494          316 ECLKLVNG-----------SKLSRM-------------VL--SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKL  369 (394)
Q Consensus       316 ~~L~l~~~-----------~~L~~L-------------~p--~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l  369 (394)
                      ....+...           ..++.+             .|  .|+. +++|+.|+|++|+++.....++.++..++.|.|
T Consensus       227 ~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~-L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L  305 (498)
T KOG4237|consen  227 SPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKK-LPNLRKLNLSNNKITRIEDGAFEGAAELQELYL  305 (498)
T ss_pred             chHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhh-cccceEeccCCCccchhhhhhhcchhhhhhhhc
Confidence            11111110           011111             15  5777 999999999999998888889999999999999


Q ss_pred             ecccccCc
Q 037494          370 KRNSYFGR  377 (394)
Q Consensus       370 ~~n~~~~~  377 (394)
                      ..|++...
T Consensus       306 ~~N~l~~v  313 (498)
T KOG4237|consen  306 TRNKLEFV  313 (498)
T ss_pred             CcchHHHH
Confidence            88886543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.27  E-value=1.8e-12  Score=133.38  Aligned_cols=200  Identities=21%  Similarity=0.197  Sum_probs=144.5

Q ss_pred             hhccCCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCC--CCCCc-ccccCcccccEEecCCC-CCccccc
Q 037494          137 ISLEQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAV--LDQFP-PGLENLFLLKYLQLNIP-TLKCLPL  212 (394)
Q Consensus       137 ~~~~~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~--~~~lp-~~i~~l~~L~~L~l~~~-~l~~lp~  212 (394)
                      .+.......+|...+.++....     ++.- ...+.|++|-+.++.  +..++ +.+..++.|++||+++| .+.++|+
T Consensus       516 ~~~~~~~~~~rr~s~~~~~~~~-----~~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~  589 (889)
T KOG4658|consen  516 IPQVKSWNSVRRMSLMNNKIEH-----IAGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPS  589 (889)
T ss_pred             cccccchhheeEEEEeccchhh-----ccCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCCh
Confidence            4555667788988888887752     2222 455679999999886  55555 44778999999999987 6889999


Q ss_pred             cccCCCCCcEEEcc-cCCccccchhhccCccCcEEEeeCCCC-CCCCCCCCCCCCcCceeCccccC----CCcchhcCCC
Q 037494          213 LICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITL-PAPPKNYSSSLKNLIFISALHPS----SCTPDILSRL  286 (394)
Q Consensus       213 ~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~-~~~~p~~l~~l~~L~~L~~~~~~----~~~~~~l~~l  286 (394)
                      .++.|.+|++|+++ + .+..+|.++++|.+|.+|++. .+. ...+|.....|++|++|.+....    .....++..+
T Consensus       590 ~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~~Lnl~-~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~L  667 (889)
T KOG4658|consen  590 SIGELVHLRYLDLSDT-GISHLPSGLGNLKKLIYLNLE-VTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENL  667 (889)
T ss_pred             HHhhhhhhhcccccCC-CccccchHHHHHHhhheeccc-cccccccccchhhhcccccEEEeeccccccchhhHHhhhcc
Confidence            99999999999999 8 999999999999999999999 776 44444445569999999987765    4556677888


Q ss_pred             CCCCeEEEeecCCccccchhhhhcCCCCCc----EEEecCCCCCCccCC-CCCCCCCCceEEEEecccCC
Q 037494          287 PTVQTLRISGDLSHYHSGVSKSLCELHKLE----CLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTELM  351 (394)
Q Consensus       287 ~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~----~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l~  351 (394)
                      .+|+.+.+....   . .+...+..+..|.    .+.+.+ .....+ + .+.. +.+|+.|.+.+|.+.
T Consensus       668 e~L~~ls~~~~s---~-~~~e~l~~~~~L~~~~~~l~~~~-~~~~~~-~~~~~~-l~~L~~L~i~~~~~~  730 (889)
T KOG4658|consen  668 EHLENLSITISS---V-LLLEDLLGMTRLRSLLQSLSIEG-CSKRTL-ISSLGS-LGNLEELSILDCGIS  730 (889)
T ss_pred             cchhhheeecch---h-HhHhhhhhhHHHHHHhHhhhhcc-ccccee-eccccc-ccCcceEEEEcCCCc
Confidence            888888886553   2 2222233333333    233222 223333 3 5555 778888888888764

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.27  E-value=2.4e-13  Score=127.78  Aligned_cols=171  Identities=22%  Similarity=0.228  Sum_probs=140.4

Q ss_pred             ccCCceeEEEcCCCCCCCCcccccCcccccEEecCCCCCccccccccCCCCCcEEEcc-cCCccccchhhccCccCcEEE
Q 037494          169 ENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLN  247 (394)
Q Consensus       169 ~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~  247 (394)
                      +.+-.|..+.+..|.+..+|.+++++..|++++|+.|.+..+|..++.|+ |+.|-++ | ++..+|..++.+..|.+|+
T Consensus        95 ~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNN-kl~~lp~~ig~~~tl~~ld  172 (722)
T KOG0532|consen   95 CAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNN-KLTSLPEEIGLLPTLAHLD  172 (722)
T ss_pred             HHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecC-ccccCCcccccchhHHHhh
Confidence            66777888888888888889999999999999999999999998888877 8888888 6 8889999899888999999


Q ss_pred             eeCCCCCCCCCCCCCCCCcCceeCccccC-CCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCC
Q 037494          248 FDSITLPAPPKNYSSSLKNLIFISALHPS-SCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKL  326 (394)
Q Consensus       248 l~~~~~~~~~p~~l~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L  326 (394)
                      .+ .|.+..+|..++.+.+|+.|.+..+. ...|++++.|+ |..|++++|   ....+|-.|..|++|++|-|.++| |
T Consensus       173 ~s-~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~Lp-Li~lDfScN---kis~iPv~fr~m~~Lq~l~LenNP-L  246 (722)
T KOG0532|consen  173 VS-KNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLP-LIRLDFSCN---KISYLPVDFRKMRHLQVLQLENNP-L  246 (722)
T ss_pred             hh-hhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCc-eeeeecccC---ceeecchhhhhhhhheeeeeccCC-C
Confidence            98 88888889889999999999888887 88888888775 788899888   567788888999999999998743 5


Q ss_pred             CccCC-CC---CCCCCCceEEEEeccc
Q 037494          327 SRMVL-SE---YQFPPSLIQLSLSNTE  349 (394)
Q Consensus       327 ~~L~p-~~---~~~l~~L~~L~L~~~~  349 (394)
                      +.= | .+   +. ..=.++|++..|+
T Consensus       247 qSP-PAqIC~kGk-VHIFKyL~~qA~q  271 (722)
T KOG0532|consen  247 QSP-PAQICEKGK-VHIFKYLSTQACQ  271 (722)
T ss_pred             CCC-hHHHHhccc-eeeeeeecchhcc
Confidence            543 3 32   22 4446778888884

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.25  E-value=2.6e-13  Score=127.63  Aligned_cols=191  Identities=18%  Similarity=0.255  Sum_probs=158.7

Q ss_pred             cCCceeEEEcCCCCCCCCcccccCcccccEEecCCCCCccccccccCCCCCcEEEcc-cCCccccchhhccCccCcEEEe
Q 037494          170 NFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLNF  248 (394)
Q Consensus       170 ~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l  248 (394)
                      .+..-...+++.|.+..+|..++.+..|..+.+..|.+..+|+.++++..|.+|+++ | ++..+|..+..++ |+.|-+
T Consensus        73 ~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~N-qlS~lp~~lC~lp-Lkvli~  150 (722)
T KOG0532|consen   73 DLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSN-QLSHLPDGLCDLP-LKVLIV  150 (722)
T ss_pred             cccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccc-hhhcCChhhhcCc-ceeEEE
Confidence            344445678889999999988999999999999999999999999999999999999 8 8999998888876 899999


Q ss_pred             eCCCCCCCCCCCCCCCCcCceeCccccC-CCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCC
Q 037494          249 DSITLPAPPKNYSSSLKNLIFISALHPS-SCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLS  327 (394)
Q Consensus       249 ~~~~~~~~~p~~l~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~  327 (394)
                      + +|.+..+|+.++.+..|..|+.+.|. ...+..++.+.+|+.|.+..|   ....+|+.++.+ .|.+|++++ +++.
T Consensus       151 s-NNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn---~l~~lp~El~~L-pLi~lDfSc-Nkis  224 (722)
T KOG0532|consen  151 S-NNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRN---HLEDLPEELCSL-PLIRLDFSC-NKIS  224 (722)
T ss_pred             e-cCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhh---hhhhCCHHHhCC-ceeeeeccc-Ccee
Confidence            9 88899999999988888888888888 788888999999999999888   677788887754 677888887 8888


Q ss_pred             ccCC-CCCCCCCCceEEEEecccCCCCCcccc--cCCCCCCeEEEe
Q 037494          328 RMVL-SEYQFPPSLIQLSLSNTELMEDPMPML--ERLPRLQVMKLK  370 (394)
Q Consensus       328 ~L~p-~~~~~l~~L~~L~L~~~~l~~~~~~~l--~~l~~L~~L~l~  370 (394)
                      .+ | .|.. ++.|++|-|.+|.+...+.+..  |...-.++|+..
T Consensus       225 ~i-Pv~fr~-m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~q  268 (722)
T KOG0532|consen  225 YL-PVDFRK-MRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQ  268 (722)
T ss_pred             ec-chhhhh-hhhheeeeeccCCCCCChHHHHhccceeeeeeecch
Confidence            88 9 8888 9999999999999865444432  445667777774

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.17  E-value=4e-11  Score=115.12  Aligned_cols=175  Identities=23%  Similarity=0.234  Sum_probs=141.5

Q ss_pred             ccCCceeEEEcCCCCCCCCcccccCcc-cccEEecCCCCCccccccccCCCCCcEEEcc-cCCccccchhhccCccCcEE
Q 037494          169 ENFKYLRVLNWGSAVLDQFPPGLENLF-LLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHL  246 (394)
Q Consensus       169 ~~l~~L~~L~l~~~~~~~lp~~i~~l~-~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L  246 (394)
                      ..++.++.|++.++.+.++++.++.+. +|+.|++++|.+..+|..++.+++|+.|+++ | .+..+|...+.+++|+.|
T Consensus       113 ~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~L  191 (394)
T COG4886         113 LELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNNL  191 (394)
T ss_pred             hcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhhhhe
Confidence            566889999999999999998888885 9999999999999998888999999999999 8 999999877789999999


Q ss_pred             EeeCCCCCCCCCCCCCCCCcCceeCccccC-CCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCC
Q 037494          247 NFDSITLPAPPKNYSSSLKNLIFISALHPS-SCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSK  325 (394)
Q Consensus       247 ~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  325 (394)
                      +++ ++....+|..++....|++|.+..+. ...+..+.++.++..+.+.++.   ...++..++.+++++.|++++ ..
T Consensus       192 ~ls-~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~---~~~~~~~~~~l~~l~~L~~s~-n~  266 (394)
T COG4886         192 DLS-GNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNK---LEDLPESIGNLSNLETLDLSN-NQ  266 (394)
T ss_pred             ecc-CCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCce---eeeccchhccccccceecccc-cc
Confidence            999 99889998877777779999888885 6667777777888777766663   333356677777788888877 55


Q ss_pred             CCccCCCCCCCCCCceEEEEecccCC
Q 037494          326 LSRMVLSEYQFPPSLIQLSLSNTELM  351 (394)
Q Consensus       326 L~~L~p~~~~~l~~L~~L~L~~~~l~  351 (394)
                      +..+ +.++. +.+|+.|+++++.+.
T Consensus       267 i~~i-~~~~~-~~~l~~L~~s~n~~~  290 (394)
T COG4886         267 ISSI-SSLGS-LTNLRELDLSGNSLS  290 (394)
T ss_pred             cccc-ccccc-cCccCEEeccCcccc
Confidence            6655 44555 778888888887654

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.14  E-value=3.8e-11  Score=115.28  Aligned_cols=191  Identities=25%  Similarity=0.256  Sum_probs=159.7

Q ss_pred             EEEcCCCCCCCCcccccCcccccEEecCCCCCccccccccCCC-CCcEEEcc-cCCccccchhhccCccCcEEEeeCCCC
Q 037494          176 VLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTLL-NLETLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITL  253 (394)
Q Consensus       176 ~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~-~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~  253 (394)
                      .++...+.+......+..++.++.|++.++.+.++|+..+.+. +|+.|+++ + .+..+|..++.+++|+.|+++ +|.
T Consensus        97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~-~N~  174 (394)
T COG4886          97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLS-FND  174 (394)
T ss_pred             eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhccccccccc-chhhhhhhhhccccccccccC-Cch
Confidence            5778888775555567777899999999999999998888885 99999999 8 999998889999999999999 999


Q ss_pred             CCCCCCCCCCCCcCceeCccccC-CCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCccCC-
Q 037494          254 PAPPKNYSSSLKNLIFISALHPS-SCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVL-  331 (394)
Q Consensus       254 ~~~~p~~l~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p-  331 (394)
                      +..+|...+.+++|+.|.+.++. ...+..++....|+.|.+.++.   ....+..+..+..+..+.+.+ ..+..+ | 
T Consensus       175 l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~---~~~~~~~~~~~~~l~~l~l~~-n~~~~~-~~  249 (394)
T COG4886         175 LSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNS---IIELLSSLSNLKNLSGLELSN-NKLEDL-PE  249 (394)
T ss_pred             hhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCc---ceecchhhhhcccccccccCC-ceeeec-cc
Confidence            99999888799999999999998 6666666677779999999883   455666777888888888665 556665 6 


Q ss_pred             CCCCCCCCceEEEEecccCCCCCcccccCCCCCCeEEEecccccC
Q 037494          332 SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFG  376 (394)
Q Consensus       332 ~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~  376 (394)
                      .++. +++++.|++++|++...  +.++.+.+|+.|++++|.+..
T Consensus       250 ~~~~-l~~l~~L~~s~n~i~~i--~~~~~~~~l~~L~~s~n~~~~  291 (394)
T COG4886         250 SIGN-LSNLETLDLSNNQISSI--SSLGSLTNLRELDLSGNSLSN  291 (394)
T ss_pred             hhcc-ccccceecccccccccc--ccccccCccCEEeccCccccc
Confidence            7777 88999999999998543  448899999999998876653

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.96  E-value=6.1e-11  Score=108.60  Aligned_cols=83  Identities=16%  Similarity=0.118  Sum_probs=39.1

Q ss_pred             ccCCceeEEEcCCCCCCCCc--ccccCcccccEEecCCCCCccc---cccccCCCCCcEEEcc-cCCccccch--hhccC
Q 037494          169 ENFKYLRVLNWGSAVLDQFP--PGLENLFLLKYLQLNIPTLKCL---PLLICTLLNLETLEMP-AGYIDHSPE--GIWMM  240 (394)
Q Consensus       169 ~~l~~L~~L~l~~~~~~~lp--~~i~~l~~L~~L~l~~~~l~~l---p~~l~~l~~L~~L~l~-~~~l~~lp~--~i~~l  240 (394)
                      ++++.||...+.++.....+  +....+++++.|++++|-+..+   -.-+..|++|+.|+++ | .+.....  ....+
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~N-rl~~~~~s~~~~~l  196 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSN-RLSNFISSNTTLLL  196 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccc-cccCCccccchhhh
Confidence            44555666666655554333  2444555666666665543321   1223345555555555 4 3321111  11234


Q ss_pred             ccCcEEEeeCCCC
Q 037494          241 QKLMHLNFDSITL  253 (394)
Q Consensus       241 ~~L~~L~l~~~~~  253 (394)
                      +.|+.|.++ .|.
T Consensus       197 ~~lK~L~l~-~CG  208 (505)
T KOG3207|consen  197 SHLKQLVLN-SCG  208 (505)
T ss_pred             hhhheEEec-cCC
Confidence            455555555 544

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.93  E-value=4.4e-10  Score=93.70  Aligned_cols=82  Identities=24%  Similarity=0.216  Sum_probs=19.0

Q ss_pred             ccCCceeEEEcCCCCCCCCccccc-CcccccEEecCCCCCccccccccCCCCCcEEEcc-cCCccccchhhc-cCccCcE
Q 037494          169 ENFKYLRVLNWGSAVLDQFPPGLE-NLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIW-MMQKLMH  245 (394)
Q Consensus       169 ~~l~~L~~L~l~~~~~~~lp~~i~-~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~-~l~~L~~  245 (394)
                      .+...++.|+++++.++.+. .++ .+.+|+.|++++|.|+.++ .+..+++|++|+++ | .+..++..+. .+++|++
T Consensus        16 ~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L~~   92 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNN-RISSISEGLDKNLPNLQE   92 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-TT--E
T ss_pred             cccccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCC-CCCccccchHHhCCcCCE
Confidence            33444566666666665543 233 4556666666666666554 45556666666666 5 6665544432 4566666


Q ss_pred             EEeeCCCCC
Q 037494          246 LNFDSITLP  254 (394)
Q Consensus       246 L~l~~~~~~  254 (394)
                      |+++ +|.+
T Consensus        93 L~L~-~N~I  100 (175)
T PF14580_consen   93 LYLS-NNKI  100 (175)
T ss_dssp             EE-T-TS--
T ss_pred             EECc-CCcC
Confidence            6666 5543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.92  E-value=4.7e-10  Score=93.56  Aligned_cols=132  Identities=21%  Similarity=0.235  Sum_probs=53.1

Q ss_pred             hhccCCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCcccccCcccccEEecCCCCCccccccc-c
Q 037494          137 ISLEQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLI-C  215 (394)
Q Consensus       137 ~~~~~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~l-~  215 (394)
                      .+...+..++|.|.+.++.+.     .+..+-..+.+|++|++++|.++++. .+..+++|+.|++++|.|+.+++.+ .
T Consensus        12 ~~~~~n~~~~~~L~L~~n~I~-----~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~   85 (175)
T PF14580_consen   12 IAQYNNPVKLRELNLRGNQIS-----TIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDK   85 (175)
T ss_dssp             -----------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHH
T ss_pred             ccccccccccccccccccccc-----cccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHH
Confidence            333345567888888888886     34444125788999999999998875 4778899999999999999887655 3


Q ss_pred             CCCCCcEEEcc-cCCccccc--hhhccCccCcEEEeeCCCCCCCCCCC----CCCCCcCceeCccccC
Q 037494          216 TLLNLETLEMP-AGYIDHSP--EGIWMMQKLMHLNFDSITLPAPPKNY----SSSLKNLIFISALHPS  276 (394)
Q Consensus       216 ~l~~L~~L~l~-~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~~p~~----l~~l~~L~~L~~~~~~  276 (394)
                      .+++|++|+++ | .+..+-  ..+..+++|+.|++. +|+....+.-    +..+++|+.|+...+.
T Consensus        86 ~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~-~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V~  151 (175)
T PF14580_consen   86 NLPNLQELYLSNN-KISDLNELEPLSSLPKLRVLSLE-GNPVCEKKNYRLFVIYKLPSLKVLDGQDVT  151 (175)
T ss_dssp             H-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-T-T-GGGGSTTHHHHHHHH-TT-SEETTEETT
T ss_pred             hCCcCCEEECcCC-cCCChHHhHHHHcCCCcceeecc-CCcccchhhHHHHHHHHcChhheeCCEEcc
Confidence            58999999999 7 776654  357788999999999 8886555432    5667788888776655

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.70  E-value=2.3e-09  Score=93.97  Aligned_cols=99  Identities=17%  Similarity=0.110  Sum_probs=44.6

Q ss_pred             cccEEecCCCCCccccccccCCCCCcEEEcc-cCCccccchhhccCccCcEEEeeCCCCCCCCCCCCCCCCcCceeCccc
Q 037494          196 LLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITLPAPPKNYSSSLKNLIFISALH  274 (394)
Q Consensus       196 ~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~  274 (394)
                      .|+.+|+++|.|+.+.+++.-++.++.|+++ | .+..+.. +..+++|++|+++ +|.+.++-..-.+|.|.++|.+..
T Consensus       285 ~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N-~i~~v~n-La~L~~L~~LDLS-~N~Ls~~~Gwh~KLGNIKtL~La~  361 (490)
T KOG1259|consen  285 ELTELDLSGNLITQIDESVKLAPKLRRLILSQN-RIRTVQN-LAELPQLQLLDLS-GNLLAECVGWHLKLGNIKTLKLAQ  361 (490)
T ss_pred             hhhhccccccchhhhhhhhhhccceeEEecccc-ceeeehh-hhhcccceEeecc-cchhHhhhhhHhhhcCEeeeehhh
Confidence            3444555555555554444444555555555 4 4444322 4444555555555 444333322222344444444444


Q ss_pred             cCCCcchhcCCCCCCCeEEEeec
Q 037494          275 PSSCTPDILSRLPTVQTLRISGD  297 (394)
Q Consensus       275 ~~~~~~~~l~~l~~L~~L~l~~~  297 (394)
                      +......+++++-+|..|++++|
T Consensus       362 N~iE~LSGL~KLYSLvnLDl~~N  384 (490)
T KOG1259|consen  362 NKIETLSGLRKLYSLVNLDLSSN  384 (490)
T ss_pred             hhHhhhhhhHhhhhheecccccc
Confidence            43333344444444444444444

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.65  E-value=8.1e-09  Score=94.91  Aligned_cols=174  Identities=18%  Similarity=0.101  Sum_probs=115.3

Q ss_pred             CCceEEEEEEeCCcchhhc---cCCCCCccEEEEecCCCccchhcch-hHHhccCCceeEEEcCCCCCCCCccc--ccCc
Q 037494          121 LATVKRCFILEDLIEFISL---EQSDMYLQSFLNHSSESDHLALIDC-ENFCENFKYLRVLNWGSAVLDQFPPG--LENL  194 (394)
Q Consensus       121 ~~~~r~L~l~~~~~~~~~~---~~~~~~lr~L~l~~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~lp~~--i~~l  194 (394)
                      .+++|.+++........+.   ...++++|.|+++.+-..   .|.. -.+...+++|+.|+++.|.+....++  -..+
T Consensus       120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~---nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l  196 (505)
T KOG3207|consen  120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFH---NWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL  196 (505)
T ss_pred             HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHH---hHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence            4467777777444444442   377888999988887665   3333 55668889999999998886633322  2357


Q ss_pred             ccccEEecCCCCCc--cccccccCCCCCcEEEcc-cCCccccchhhccCccCcEEEeeCCCCCCCCC--CCCCCCCcCce
Q 037494          195 FLLKYLQLNIPTLK--CLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITLPAPPK--NYSSSLKNLIF  269 (394)
Q Consensus       195 ~~L~~L~l~~~~l~--~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p--~~l~~l~~L~~  269 (394)
                      .+|+.|.+++|.+.  ++-..+..+++|+.|++. |..+..-.....-+..|+.|+++ +|....++  ..++.++.|+.
T Consensus       197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs-~N~li~~~~~~~~~~l~~L~~  275 (505)
T KOG3207|consen  197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLS-NNNLIDFDQGYKVGTLPGLNQ  275 (505)
T ss_pred             hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhcccc-CCcccccccccccccccchhh
Confidence            78888999888776  333344567888888888 63332222233456778888888 88877776  34778888888


Q ss_pred             eCccccC---CCcch-----hcCCCCCCCeEEEeecC
Q 037494          270 ISALHPS---SCTPD-----ILSRLPTVQTLRISGDL  298 (394)
Q Consensus       270 L~~~~~~---~~~~~-----~l~~l~~L~~L~l~~~~  298 (394)
                      |++..++   ...+.     ....+++|+.|.+..|+
T Consensus       276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~  312 (505)
T KOG3207|consen  276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENN  312 (505)
T ss_pred             hhccccCcchhcCCCccchhhhcccccceeeecccCc
Confidence            8888776   11111     13446677788877775

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.64  E-value=9.1e-09  Score=90.31  Aligned_cols=130  Identities=24%  Similarity=0.273  Sum_probs=85.1

Q ss_pred             CccCcEEEeeCCCCCCCCCCCCCCCCcCceeCccccCCCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEE
Q 037494          240 MQKLMHLNFDSITLPAPPKNYSSSLKNLIFISALHPSSCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLK  319 (394)
Q Consensus       240 l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~  319 (394)
                      .+.|..++++ +|.+..+-.++.-++.++.|.++.++......+..+++|..|++++|.   ...+..+=..+-+++.|.
T Consensus       283 Wq~LtelDLS-~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~---Ls~~~Gwh~KLGNIKtL~  358 (490)
T KOG1259|consen  283 WQELTELDLS-GNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNL---LAECVGWHLKLGNIKTLK  358 (490)
T ss_pred             Hhhhhhcccc-ccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccch---hHhhhhhHhhhcCEeeee
Confidence            3557777777 777777666666677777777777775555557777777777877774   222222223455677777


Q ss_pred             ecCCCCCCccCCCCCCCCCCceEEEEecccCCCC-CcccccCCCCCCeEEEecccccC
Q 037494          320 LVNGSKLSRMVLSEYQFPPSLIQLSLSNTELMED-PMPMLERLPRLQVMKLKRNSYFG  376 (394)
Q Consensus       320 l~~~~~L~~L~p~~~~~l~~L~~L~L~~~~l~~~-~~~~l~~l~~L~~L~l~~n~~~~  376 (394)
                      +.+ +.++.| .-++. +-+|..||+++|++... ....+|++|+|+++.+.+|.+.+
T Consensus       359 La~-N~iE~L-SGL~K-LYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  359 LAQ-NKIETL-SGLRK-LYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             hhh-hhHhhh-hhhHh-hhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence            776 555554 33444 66788888888876432 23457888888888887776543

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.64  E-value=3.6e-09  Score=94.57  Aligned_cols=230  Identities=18%  Similarity=0.123  Sum_probs=152.2

Q ss_pred             CCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCC----CCCccc-------ccCcccccEEecCCCCCc-
Q 037494          141 QSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVL----DQFPPG-------LENLFLLKYLQLNIPTLK-  208 (394)
Q Consensus       141 ~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~----~~lp~~-------i~~l~~L~~L~l~~~~l~-  208 (394)
                      ..+..+..+.++++....-....+...+.+.+.||.-++++...    .++|+.       +-..++|++++||.|.+. 
T Consensus        27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~  106 (382)
T KOG1909|consen   27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP  106 (382)
T ss_pred             cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence            66777888888888775433334444447888888888876542    144433       334568899999988764 


Q ss_pred             ccc----ccccCCCCCcEEEcc-cCCccccchh--------------hccCccCcEEEeeCCCCCCCCCCC-----CCCC
Q 037494          209 CLP----LLICTLLNLETLEMP-AGYIDHSPEG--------------IWMMQKLMHLNFDSITLPAPPKNY-----SSSL  264 (394)
Q Consensus       209 ~lp----~~l~~l~~L~~L~l~-~~~l~~lp~~--------------i~~l~~L~~L~l~~~~~~~~~p~~-----l~~l  264 (394)
                      .-+    .-+..+..|++|.|. | .+......              ++.-++||.+... +|.+...+..     +...
T Consensus       107 ~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~-rNrlen~ga~~~A~~~~~~  184 (382)
T KOG1909|consen  107 KGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICG-RNRLENGGATALAEAFQSH  184 (382)
T ss_pred             cchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEee-ccccccccHHHHHHHHHhc
Confidence            222    235668889999988 7 66543211              2345788999888 7776655432     4455


Q ss_pred             CcCceeCccccC------CCcchhcCCCCCCCeEEEeecC--CccccchhhhhcCCCCCcEEEecCCCCCCccC----C-
Q 037494          265 KNLIFISALHPS------SCTPDILSRLPTVQTLRISGDL--SHYHSGVSKSLCELHKLECLKLVNGSKLSRMV----L-  331 (394)
Q Consensus       265 ~~L~~L~~~~~~------~~~~~~l~~l~~L~~L~l~~~~--~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~----p-  331 (394)
                      +.|+.+.+..++      .-....+..+++|+.|++..|.  ......+...++.+++|+.|++++|. ++.=-    - 
T Consensus       185 ~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl-l~~~Ga~a~~~  263 (382)
T KOG1909|consen  185 PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL-LENEGAIAFVD  263 (382)
T ss_pred             cccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc-cccccHHHHHH
Confidence            778888777766      1233567888999999999886  12223455677888899999998852 21100    0 


Q ss_pred             -CCCCCCCCceEEEEecccCCCCCcc----cccCCCCCCeEEEecccc
Q 037494          332 -SEYQFPPSLIQLSLSNTELMEDPMP----MLERLPRLQVMKLKRNSY  374 (394)
Q Consensus       332 -~~~~~l~~L~~L~L~~~~l~~~~~~----~l~~l~~L~~L~l~~n~~  374 (394)
                       .-.. .|+|+.|.+.+|.++.....    .+...|.|+.|+|++|.+
T Consensus       264 al~~~-~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  264 ALKES-APSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHhcc-CCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence             1122 68899999999987654432    345688999999988887

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=98.51  E-value=1.9e-08  Score=92.29  Aligned_cols=42  Identities=38%  Similarity=0.708  Sum_probs=38.8

Q ss_pred             cccCCCchhhHHHhccccccCCCceechHHHHHHHHhcCCCC
Q 037494           16 YSVMELPFHLKVYCIYLCVFCPSIEISTRQLCQLWIAEGFIP   57 (394)
Q Consensus        16 ~SY~~L~~~~k~cfl~~~~Fp~~~~i~~~~Li~~wia~gfi~   57 (394)
                      +||+.||+++|+||+|||+||+++.|+++.+|++|+||||+.
T Consensus       242 ~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~  283 (287)
T PF00931_consen  242 LSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFIS  283 (287)
T ss_dssp             HHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC
T ss_pred             echhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCc
Confidence            799999999999999999999999999999999999999983

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>PLN03150 hypothetical protein; Provisional

Probab=98.49  E-value=2.7e-07  Score=93.28  Aligned_cols=87  Identities=17%  Similarity=0.246  Sum_probs=40.8

Q ss_pred             eeEEEcCCCCCC-CCcccccCcccccEEecCCCCCc-cccccccCCCCCcEEEcc-cCCccccchhhccCccCcEEEeeC
Q 037494          174 LRVLNWGSAVLD-QFPPGLENLFLLKYLQLNIPTLK-CLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLNFDS  250 (394)
Q Consensus       174 L~~L~l~~~~~~-~lp~~i~~l~~L~~L~l~~~~l~-~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~  250 (394)
                      ++.|+|+++.+. .+|..++.+++|+.|+|++|.+. .+|..++.+++|+.|+++ |.....+|..++++++|++|+++ 
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls-  498 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN-  498 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc-
Confidence            444455554444 44444555555555555555443 344445555555555555 41222444445555555555555 


Q ss_pred             CCC-CCCCCCCC
Q 037494          251 ITL-PAPPKNYS  261 (394)
Q Consensus       251 ~~~-~~~~p~~l  261 (394)
                      +|. ...+|..+
T Consensus       499 ~N~l~g~iP~~l  510 (623)
T PLN03150        499 GNSLSGRVPAAL  510 (623)
T ss_pred             CCcccccCChHH
Confidence            444 33444443

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.41  E-value=1.5e-07  Score=84.49  Aligned_cols=207  Identities=16%  Similarity=0.153  Sum_probs=145.3

Q ss_pred             HhccCCceeEEEcCCCCCC-----CCcccccCcccccEEecCCC---C-Ccccccc-------ccCCCCCcEEEcc-cCC
Q 037494          167 FCENFKYLRVLNWGSAVLD-----QFPPGLENLFLLKYLQLNIP---T-LKCLPLL-------ICTLLNLETLEMP-AGY  229 (394)
Q Consensus       167 ~~~~l~~L~~L~l~~~~~~-----~lp~~i~~l~~L~~L~l~~~---~-l~~lp~~-------l~~l~~L~~L~l~-~~~  229 (394)
                      ....+..++.++++||.+.     .+-..+.+.++|+..+++.-   + ..++|+.       +-..+.|++|+|| |..
T Consensus        25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~  104 (382)
T KOG1909|consen   25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF  104 (382)
T ss_pred             HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence            3388999999999999976     44567778889999999862   2 2356644       3456799999999 832


Q ss_pred             ccccch----hhccCccCcEEEeeCCCCCCCCC--------------CCCCCCCcCceeCccccC------CCcchhcCC
Q 037494          230 IDHSPE----GIWMMQKLMHLNFDSITLPAPPK--------------NYSSSLKNLIFISALHPS------SCTPDILSR  285 (394)
Q Consensus       230 l~~lp~----~i~~l~~L~~L~l~~~~~~~~~p--------------~~l~~l~~L~~L~~~~~~------~~~~~~l~~  285 (394)
                      -..-++    -+.+...|++|.+. +|.+...-              .-+++-+.|+++....+.      ......+..
T Consensus       105 G~~g~~~l~~ll~s~~~L~eL~L~-N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~  183 (382)
T KOG1909|consen  105 GPKGIRGLEELLSSCTDLEELYLN-NCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQS  183 (382)
T ss_pred             CccchHHHHHHHHhccCHHHHhhh-cCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHh
Confidence            223332    35678899999999 88744321              123455678888877776      233445677


Q ss_pred             CCCCCeEEEeecC--CccccchhhhhcCCCCCcEEEecCCCCCCccC----C-CCCCCCCCceEEEEecccCCCCCcccc
Q 037494          286 LPTVQTLRISGDL--SHYHSGVSKSLCELHKLECLKLVNGSKLSRMV----L-SEYQFPPSLIQLSLSNTELMEDPMPML  358 (394)
Q Consensus       286 l~~L~~L~l~~~~--~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~----p-~~~~~l~~L~~L~L~~~~l~~~~~~~l  358 (394)
                      .+.|+.+.+..|+  ......+...+..+++|+.|+|.+ +.+..--    . .+.. +++|+.|++++|.+.......+
T Consensus       184 ~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~D-Ntft~egs~~LakaL~s-~~~L~El~l~dcll~~~Ga~a~  261 (382)
T KOG1909|consen  184 HPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRD-NTFTLEGSVALAKALSS-WPHLRELNLGDCLLENEGAIAF  261 (382)
T ss_pred             ccccceEEEecccccCchhHHHHHHHHhCCcceeeeccc-chhhhHHHHHHHHHhcc-cchheeecccccccccccHHHH
Confidence            7889999999887  122235667888999999999987 2221110    2 3455 7789999999999876654433


Q ss_pred             -----cCCCCCCeEEEecccccC
Q 037494          359 -----ERLPRLQVMKLKRNSYFG  376 (394)
Q Consensus       359 -----~~l~~L~~L~l~~n~~~~  376 (394)
                           ...|+|+.|.+.+|.++.
T Consensus       262 ~~al~~~~p~L~vl~l~gNeIt~  284 (382)
T KOG1909|consen  262 VDALKESAPSLEVLELAGNEITR  284 (382)
T ss_pred             HHHHhccCCCCceeccCcchhHH
Confidence                 348999999999887654

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.38  E-value=3.5e-07  Score=62.60  Aligned_cols=54  Identities=28%  Similarity=0.399  Sum_probs=29.4

Q ss_pred             ceeEEEcCCCCCCCCc-ccccCcccccEEecCCCCCccccc-cccCCCCCcEEEcc
Q 037494          173 YLRVLNWGSAVLDQFP-PGLENLFLLKYLQLNIPTLKCLPL-LICTLLNLETLEMP  226 (394)
Q Consensus       173 ~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~  226 (394)
                      +|++|++++|.++.+| ..+..+++|++|++++|.++.+|+ .+..+++|++|+++
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~   57 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLS   57 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEET
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCc
Confidence            4555566655555554 344555555555555555555543 34555555555555

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.36  E-value=3.1e-07  Score=62.87  Aligned_cols=60  Identities=35%  Similarity=0.459  Sum_probs=49.0

Q ss_pred             CCCcEEEecCCCCCCccCC-CCCCCCCCceEEEEecccCCCCCcccccCCCCCCeEEEecccc
Q 037494          313 HKLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSY  374 (394)
Q Consensus       313 ~~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~~  374 (394)
                      ++|+.|++++ ++++.+.+ ++.. +++|++|++++|++...+...+.++++|++|++++|.+
T Consensus         1 p~L~~L~l~~-n~l~~i~~~~f~~-l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSN-NKLTEIPPDSFSN-LPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETS-STESEECTTTTTT-GTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCC-CCCCccCHHHHcC-CCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4688888887 57888833 7787 89999999999998777777788999999999987753

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.36  E-value=4.3e-08  Score=94.60  Aligned_cols=104  Identities=21%  Similarity=0.200  Sum_probs=55.7

Q ss_pred             ccCCceeEEEcCCCCCCCCcccccCcccccEEecCCCCCccccccccCCCCCcEEEcc-cCCccccchhhccCccCcEEE
Q 037494          169 ENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLN  247 (394)
Q Consensus       169 ~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~  247 (394)
                      ..++.|..|++.+|.++++...+..+++|++|++++|.|..+. .+..+..|+.|+++ | .+..+. ++..+++|+.++
T Consensus        92 ~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N-~i~~~~-~~~~l~~L~~l~  168 (414)
T KOG0531|consen   92 SKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGN-LISDIS-GLESLKSLKLLD  168 (414)
T ss_pred             ccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheeccC-cchhcc-CCccchhhhccc
Confidence            5556666666666665555444555666666666666655553 44455556666666 5 555443 233455555565


Q ss_pred             eeCCCCCCCCCCC-CCCCCcCceeCccccC
Q 037494          248 FDSITLPAPPKNY-SSSLKNLIFISALHPS  276 (394)
Q Consensus       248 l~~~~~~~~~p~~-l~~l~~L~~L~~~~~~  276 (394)
                      ++ +|....+... +..+.+++.+.+..+.
T Consensus       169 l~-~n~i~~ie~~~~~~~~~l~~l~l~~n~  197 (414)
T KOG0531|consen  169 LS-YNRIVDIENDELSELISLEELDLGGNS  197 (414)
T ss_pred             CC-cchhhhhhhhhhhhccchHHHhccCCc
Confidence            55 5554444332 3444555555555444

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.33  E-value=4.3e-08  Score=94.56  Aligned_cols=220  Identities=20%  Similarity=0.208  Sum_probs=130.2

Q ss_pred             CCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCcccccCcccccEEecCCCCCccccccccCCCCC
Q 037494          141 QSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNL  220 (394)
Q Consensus       141 ~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~L  220 (394)
                      ..+.++..+.+.++.+.     .+..++..+++|++|++++|.|+++.. +..+..|+.|++++|.|..++ .+..+.+|
T Consensus        92 ~~~~~l~~l~l~~n~i~-----~i~~~l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L  164 (414)
T KOG0531|consen   92 SKLKSLEALDLYDNKIE-----KIENLLSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNLSGNLISDIS-GLESLKSL  164 (414)
T ss_pred             ccccceeeeeccccchh-----hcccchhhhhcchheeccccccccccc-hhhccchhhheeccCcchhcc-CCccchhh
Confidence            56677788888887776     444422778888888888888887643 667777888888888888775 55557888


Q ss_pred             cEEEcc-cCCccccchh-hccCccCcEEEeeCCCCCCCCCCCCCCCCcCceeCccccCCCcchhcCCCCC--CCeEEEee
Q 037494          221 ETLEMP-AGYIDHSPEG-IWMMQKLMHLNFDSITLPAPPKNYSSSLKNLIFISALHPSSCTPDILSRLPT--VQTLRISG  296 (394)
Q Consensus       221 ~~L~l~-~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~~~~~l~~l~~--L~~L~l~~  296 (394)
                      +.++++ + .+..+... ...+.+++.+.+. ++....+ .++..+..+..+.+..+.......+..+..  |+.+++.+
T Consensus       165 ~~l~l~~n-~i~~ie~~~~~~~~~l~~l~l~-~n~i~~i-~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~  241 (414)
T KOG0531|consen  165 KLLDLSYN-RIVDIENDELSELISLEELDLG-GNSIREI-EGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSG  241 (414)
T ss_pred             hcccCCcc-hhhhhhhhhhhhccchHHHhcc-CCchhcc-cchHHHHHHHHhhcccccceeccCcccchhHHHHHHhccc
Confidence            888888 7 66666543 4677788888887 6654433 233333344444444433333333343333  77777777


Q ss_pred             cCCccccchhhhhcCCCCCcEEEecCCCCCCccCCCCCCCCCCceEEEEecccCCCC----CcccccCCCCCCeEEEecc
Q 037494          297 DLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVLSEYQFPPSLIQLSLSNTELMED----PMPMLERLPRLQVMKLKRN  372 (394)
Q Consensus       297 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p~~~~~l~~L~~L~L~~~~l~~~----~~~~l~~l~~L~~L~l~~n  372 (394)
                      ++   ....+..+..+..+..|++.+ +.+..+ ..+.. .+.+..+....+++...    .....+..+.++...+..|
T Consensus       242 n~---i~~~~~~~~~~~~l~~l~~~~-n~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (414)
T KOG0531|consen  242 NR---ISRSPEGLENLKNLPVLDLSS-NRISNL-EGLER-LPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELN  315 (414)
T ss_pred             Cc---cccccccccccccccccchhh-cccccc-ccccc-cchHHHhccCcchhcchhhhhccccccccccccccccccC
Confidence            75   222224455566677777665 333322 11122 34455555555543311    1112455677777777665


Q ss_pred             cccC
Q 037494          373 SYFG  376 (394)
Q Consensus       373 ~~~~  376 (394)
                      ....
T Consensus       316 ~~~~  319 (414)
T KOG0531|consen  316 PIRK  319 (414)
T ss_pred             cccc
Confidence            5443

>PLN03150 hypothetical protein; Provisional

Probab=98.32  E-value=1.7e-06  Score=87.64  Aligned_cols=103  Identities=16%  Similarity=0.211  Sum_probs=85.4

Q ss_pred             ccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCC-CCcccccCcccccEEecCCCCCc-cccccccCCCCCcEE
Q 037494          146 LQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLD-QFPPGLENLFLLKYLQLNIPTLK-CLPLLICTLLNLETL  223 (394)
Q Consensus       146 lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~-~lp~~i~~l~~L~~L~l~~~~l~-~lp~~l~~l~~L~~L  223 (394)
                      ++.|.+.++....    .++.-+.++++|+.|++++|.+. .+|+.++.+++|+.|++++|.+. .+|..++++++|++|
T Consensus       420 v~~L~L~~n~L~g----~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L  495 (623)
T PLN03150        420 IDGLGLDNQGLRG----FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRIL  495 (623)
T ss_pred             EEEEECCCCCccc----cCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEE
Confidence            6677777766642    44444499999999999999987 88999999999999999999987 689999999999999


Q ss_pred             Ecc-cCCccccchhhccC-ccCcEEEeeCCCC
Q 037494          224 EMP-AGYIDHSPEGIWMM-QKLMHLNFDSITL  253 (394)
Q Consensus       224 ~l~-~~~l~~lp~~i~~l-~~L~~L~l~~~~~  253 (394)
                      +++ |.....+|..++.+ .++..+++. +|.
T Consensus       496 ~Ls~N~l~g~iP~~l~~~~~~~~~l~~~-~N~  526 (623)
T PLN03150        496 NLNGNSLSGRVPAALGGRLLHRASFNFT-DNA  526 (623)
T ss_pred             ECcCCcccccCChHHhhccccCceEEec-CCc
Confidence            999 84556889887764 567788888 776

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.22  E-value=4.7e-06  Score=78.22  Aligned_cols=131  Identities=20%  Similarity=0.145  Sum_probs=70.7

Q ss_pred             ccCCceeEEEcCCCCCCCCcccccCcccccEEecCCC-CCccccccccCCCCCcEEEcc-cCCccccchhhccCccCcEE
Q 037494          169 ENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIP-TLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHL  246 (394)
Q Consensus       169 ~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~-~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L  246 (394)
                      ..+++++.|++++|.++.+|. +  -.+|+.|.+++| .+..+|..+.  .+|++|+++ |..+..+|.+      |+.|
T Consensus        49 ~~~~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~s------Le~L  117 (426)
T PRK15386         49 EEARASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPES------VRSL  117 (426)
T ss_pred             HHhcCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccccc------cceE
Confidence            556788888888887777762 1  235777888774 5666665542  477888887 6566666653      5555


Q ss_pred             EeeCCCC---CCCCCCCCCCCCcCceeCccccCCCcchhcC-CC-CCCCeEEEeecCCccccchhhhhcCCCCCcEEEec
Q 037494          247 NFDSITL---PAPPKNYSSSLKNLIFISALHPSSCTPDILS-RL-PTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLV  321 (394)
Q Consensus       247 ~l~~~~~---~~~~p~~l~~l~~L~~L~~~~~~~~~~~~l~-~l-~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~  321 (394)
                      ++. .+.   +..+|++      |+.|.+..........+. .+ ++|+.|.+.+|.  .. .+|..+.  .+|+.|.++
T Consensus       118 ~L~-~n~~~~L~~LPss------Lk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~--~i-~LP~~LP--~SLk~L~ls  185 (426)
T PRK15386        118 EIK-GSATDSIKNVPNG------LTSLSINSYNPENQARIDNLISPSLKTLSLTGCS--NI-ILPEKLP--ESLQSITLH  185 (426)
T ss_pred             EeC-CCCCcccccCcch------HhheeccccccccccccccccCCcccEEEecCCC--cc-cCccccc--ccCcEEEec
Confidence            555 433   3444443      344444222100000011 12 457777776664  21 2232222  356666665


Q ss_pred             C
Q 037494          322 N  322 (394)
Q Consensus       322 ~  322 (394)
                      .
T Consensus       186 ~  186 (426)
T PRK15386        186 I  186 (426)
T ss_pred             c
Confidence            4

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.21  E-value=1.3e-06  Score=55.03  Aligned_cols=39  Identities=26%  Similarity=0.374  Sum_probs=22.8

Q ss_pred             ceeEEEcCCCCCCCCcccccCcccccEEecCCCCCcccc
Q 037494          173 YLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLP  211 (394)
Q Consensus       173 ~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp  211 (394)
                      +|++|++++|.++++|+.++++++|++|++++|.++.+|
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence            456666666666666655666666666666666665544

...

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.08  E-value=4.3e-08  Score=86.04  Aligned_cols=169  Identities=18%  Similarity=0.107  Sum_probs=91.6

Q ss_pred             cccEEecCCCCCc--cccccccCCCCCcEEEcc-cCCc-cccchhhccCccCcEEEeeCCCC-CCCCCC--CCCCCCcCc
Q 037494          196 LLKYLQLNIPTLK--CLPLLICTLLNLETLEMP-AGYI-DHSPEGIWMMQKLMHLNFDSITL-PAPPKN--YSSSLKNLI  268 (394)
Q Consensus       196 ~L~~L~l~~~~l~--~lp~~l~~l~~L~~L~l~-~~~l-~~lp~~i~~l~~L~~L~l~~~~~-~~~~p~--~l~~l~~L~  268 (394)
                      .|++|||+...|+  .+-.-++.+.+|+.|.+. . .+ ..+...+.+-.+|+.|+++ .|. .....-  -+.+++.|+
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~-~LdD~I~~~iAkN~~L~~lnls-m~sG~t~n~~~ll~~scs~L~  263 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGL-RLDDPIVNTIAKNSNLVRLNLS-MCSGFTENALQLLLSSCSRLD  263 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhcccccc-ccCcHHHHHHhccccceeeccc-cccccchhHHHHHHHhhhhHh
Confidence            3667777776554  333334556666666665 4 33 2233456666777777777 655 222211  145666777


Q ss_pred             eeCccccC--C----CcchhcCCCCCCCeEEEeecCCccccchh-hhhcCCCCCcEEEecCCCCCCccCC-CCCCCCCCc
Q 037494          269 FISALHPS--S----CTPDILSRLPTVQTLRISGDLSHYHSGVS-KSLCELHKLECLKLVNGSKLSRMVL-SEYQFPPSL  340 (394)
Q Consensus       269 ~L~~~~~~--~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~L~~L~p-~~~~~l~~L  340 (394)
                      .|+++-|.  .    .....++  ++|+.|+++++..+...... .-...+++|..|+|+++..|+.=.- .+.. ++.|
T Consensus       264 ~LNlsWc~l~~~~Vtv~V~his--e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~k-f~~L  340 (419)
T KOG2120|consen  264 ELNLSWCFLFTEKVTVAVAHIS--ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFK-FNYL  340 (419)
T ss_pred             hcCchHhhccchhhhHHHhhhc--hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHh-cchh
Confidence            77776665  1    1111222  35666677766533332222 2235567777777776444432000 2333 6778


Q ss_pred             eEEEEecccCCCCCccc---ccCCCCCCeEEEec
Q 037494          341 IQLSLSNTELMEDPMPM---LERLPRLQVMKLKR  371 (394)
Q Consensus       341 ~~L~L~~~~l~~~~~~~---l~~l~~L~~L~l~~  371 (394)
                      ++|.++.|..  .++..   +...|.|++|++-+
T Consensus       341 ~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g  372 (419)
T KOG2120|consen  341 QHLSLSRCYD--IIPETLLELNSKPSLVYLDVFG  372 (419)
T ss_pred             eeeehhhhcC--CChHHeeeeccCcceEEEEecc
Confidence            8888888862  33332   45677788888743

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.07  E-value=1.9e-07  Score=82.16  Aligned_cols=186  Identities=18%  Similarity=0.173  Sum_probs=100.2

Q ss_pred             ceeEEEcCCCCCC--CCcccccCcccccEEecCCCCCc-cccccccCCCCCcEEEcc-cCCccccch--hhccCccCcEE
Q 037494          173 YLRVLNWGSAVLD--QFPPGLENLFLLKYLQLNIPTLK-CLPLLICTLLNLETLEMP-AGYIDHSPE--GIWMMQKLMHL  246 (394)
Q Consensus       173 ~L~~L~l~~~~~~--~lp~~i~~l~~L~~L~l~~~~l~-~lp~~l~~l~~L~~L~l~-~~~l~~lp~--~i~~l~~L~~L  246 (394)
                      .|+.||+++..++  ++..-+..+.+|+.|.+.++.+. .+-..+.+-.+|+.|+++ |+.+.+...  -+.+++.|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            3555566555554  33344445555666666665554 233445555666666666 545544332  24456666666


Q ss_pred             EeeCCCCCCC-CCC-CCCCC-CcCceeCccccC-----CCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEE
Q 037494          247 NFDSITLPAP-PKN-YSSSL-KNLIFISALHPS-----SCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECL  318 (394)
Q Consensus       247 ~l~~~~~~~~-~p~-~l~~l-~~L~~L~~~~~~-----~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L  318 (394)
                      +++ .|.... ... .+... .+|..|+++++.     .....-..++++|..|+++++- .........+.+++.|++|
T Consensus       266 Nls-Wc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v-~l~~~~~~~~~kf~~L~~l  343 (419)
T KOG2120|consen  266 NLS-WCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSV-MLKNDCFQEFFKFNYLQHL  343 (419)
T ss_pred             Cch-HhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccc-ccCchHHHHHHhcchheee
Confidence            666 655211 110 01111 245556665554     1111223457788888888775 1222455667778888888


Q ss_pred             EecCCCCCCccCC----CCCCCCCCceEEEEecccCCCCCccccc-CCCCCC
Q 037494          319 KLVNGSKLSRMVL----SEYQFPPSLIQLSLSNTELMEDPMPMLE-RLPRLQ  365 (394)
Q Consensus       319 ~l~~~~~L~~L~p----~~~~~l~~L~~L~L~~~~l~~~~~~~l~-~l~~L~  365 (394)
                      +++.|-.+-   |    .+.+ .|+|.+|++.+|- ....++.+. .+|+|+
T Consensus       344 SlsRCY~i~---p~~~~~l~s-~psl~yLdv~g~v-sdt~mel~~e~~~~lk  390 (419)
T KOG2120|consen  344 SLSRCYDII---PETLLELNS-KPSLVYLDVFGCV-SDTTMELLKEMLSHLK  390 (419)
T ss_pred             ehhhhcCCC---hHHeeeecc-CcceEEEEecccc-CchHHHHHHHhCcccc
Confidence            887642222   3    3455 7889999988875 333344433 455554

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.02  E-value=6.1e-06  Score=51.97  Aligned_cols=39  Identities=31%  Similarity=0.307  Sum_probs=28.8

Q ss_pred             ccccEEecCCCCCccccccccCCCCCcEEEcc-cCCccccc
Q 037494          195 FLLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSP  234 (394)
Q Consensus       195 ~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp  234 (394)
                      ++|++|++++|.|+.+|+.++++++|++|+++ | .+..+|
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDIS   40 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEG
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCc
Confidence            46788888888888888778888888888888 7 676654

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.98  E-value=1.5e-05  Score=74.89  Aligned_cols=129  Identities=16%  Similarity=0.170  Sum_probs=84.4

Q ss_pred             CCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCC-CCCCcccccCcccccEEecCCC-CCccccccccCCC
Q 037494          141 QSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAV-LDQFPPGLENLFLLKYLQLNIP-TLKCLPLLICTLL  218 (394)
Q Consensus       141 ~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~-~~~lp~~i~~l~~L~~L~l~~~-~l~~lp~~l~~l~  218 (394)
                      ..+.+++.|.+.++...     .+|.+   -.+|+.|.++++. ++.+|+.+.  .+|++|.+++| .+..+|+.     
T Consensus        49 ~~~~~l~~L~Is~c~L~-----sLP~L---P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~s-----  113 (426)
T PRK15386         49 EEARASGRLYIKDCDIE-----SLPVL---PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPES-----  113 (426)
T ss_pred             HHhcCCCEEEeCCCCCc-----ccCCC---CCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccccc-----
Confidence            45688999999998664     33433   2369999998866 677776553  58999999998 78888865     


Q ss_pred             CCcEEEcc-c--CCccccchhhccCccCcEEEeeCCCC-C--CCCCCCCCCC-CcCceeCccccC-CCcchhcCCCCCCC
Q 037494          219 NLETLEMP-A--GYIDHSPEGIWMMQKLMHLNFDSITL-P--APPKNYSSSL-KNLIFISALHPS-SCTPDILSRLPTVQ  290 (394)
Q Consensus       219 ~L~~L~l~-~--~~l~~lp~~i~~l~~L~~L~l~~~~~-~--~~~p~~l~~l-~~L~~L~~~~~~-~~~~~~l~~l~~L~  290 (394)
                       |+.|++. +  ..+..+|.+      |+.|.+. ++. .  ..+|   ..+ ++|++|.+.+|. ...+..+.  .+|+
T Consensus       114 -Le~L~L~~n~~~~L~~LPss------Lk~L~I~-~~n~~~~~~lp---~~LPsSLk~L~Is~c~~i~LP~~LP--~SLk  180 (426)
T PRK15386        114 -VRSLEIKGSATDSIKNVPNG------LTSLSIN-SYNPENQARID---NLISPSLKTLSLTGCSNIILPEKLP--ESLQ  180 (426)
T ss_pred             -cceEEeCCCCCcccccCcch------Hhheecc-ccccccccccc---cccCCcccEEEecCCCcccCccccc--ccCc
Confidence             6666666 3  245667764      4556554 322 1  1111   122 478888888776 33344344  4788


Q ss_pred             eEEEeec
Q 037494          291 TLRISGD  297 (394)
Q Consensus       291 ~L~l~~~  297 (394)
                      .|.++.+
T Consensus       181 ~L~ls~n  187 (426)
T PRK15386        181 SITLHIE  187 (426)
T ss_pred             EEEeccc
Confidence            8888665

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.97  E-value=2.2e-06  Score=75.55  Aligned_cols=96  Identities=22%  Similarity=0.238  Sum_probs=53.9

Q ss_pred             EEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCC---CcccccCcccccEEecCCCCCc----cccccccCCCCC
Q 037494          148 SFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQ---FPPGLENLFLLKYLQLNIPTLK----CLPLLICTLLNL  220 (394)
Q Consensus       148 ~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~---lp~~i~~l~~L~~L~l~~~~l~----~lp~~l~~l~~L  220 (394)
                      .+.+.++.+..  ...+..|-...+.++.+++.+|.+++   +-.-+.++++|++|+++.|.+.    .+|   -.+.+|
T Consensus        49 llvln~~~id~--~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl  123 (418)
T KOG2982|consen   49 LLVLNGSIIDN--EGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNL  123 (418)
T ss_pred             hheecCCCCCc--chhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccce
Confidence            44555555542  22334444567778888888888763   3344457777888888777643    333   234566


Q ss_pred             cEEEcc-cCCc--cccchhhccCccCcEEEee
Q 037494          221 ETLEMP-AGYI--DHSPEGIWMMQKLMHLNFD  249 (394)
Q Consensus       221 ~~L~l~-~~~l--~~lp~~i~~l~~L~~L~l~  249 (394)
                      ++|-|. + .+  ......+..+|+++.|+++
T Consensus       124 ~~lVLNgT-~L~w~~~~s~l~~lP~vtelHmS  154 (418)
T KOG2982|consen  124 RVLVLNGT-GLSWTQSTSSLDDLPKVTELHMS  154 (418)
T ss_pred             EEEEEcCC-CCChhhhhhhhhcchhhhhhhhc
Confidence            666666 4 22  1222334455566666665

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.88  E-value=6e-06  Score=83.74  Aligned_cols=102  Identities=23%  Similarity=0.075  Sum_probs=61.1

Q ss_pred             ccccEEecCCCC-C-cccccccc-CCCCCcEEEcc-c-CCccccchhhccCccCcEEEeeCCCCCCCCCCCCCCCCcCce
Q 037494          195 FLLKYLQLNIPT-L-KCLPLLIC-TLLNLETLEMP-A-GYIDHSPEGIWMMQKLMHLNFDSITLPAPPKNYSSSLKNLIF  269 (394)
Q Consensus       195 ~~L~~L~l~~~~-l-~~lp~~l~-~l~~L~~L~l~-~-~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~  269 (394)
                      .+|++|+++|.. + ...|..++ -||.|++|.++ - -...++-.-..++++|..||++ ++.+..+ .++++|++||+
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS-~TnI~nl-~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDIS-GTNISNL-SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecC-CCCccCc-HHHhccccHHH
Confidence            356666666632 1 23343443 36677777666 2 0112222334467777777777 7665555 56777777777


Q ss_pred             eCccccC---CCcchhcCCCCCCCeEEEeecC
Q 037494          270 ISALHPS---SCTPDILSRLPTVQTLRISGDL  298 (394)
Q Consensus       270 L~~~~~~---~~~~~~l~~l~~L~~L~l~~~~  298 (394)
                      |.+.+-.   ......+-.|++|+.|+++...
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~  231 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDK  231 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence            7776655   3445567777788888887765

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.79  E-value=2.5e-05  Score=79.33  Aligned_cols=107  Identities=18%  Similarity=0.226  Sum_probs=69.4

Q ss_pred             CCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCcccccCcccccEEecCCCCCcccc--ccccCCC
Q 037494          141 QSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLP--LLICTLL  218 (394)
Q Consensus       141 ~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp--~~l~~l~  218 (394)
                      ..++.||+|.+.+....   ..++..++.++++|+.||+++++++.+ ..+++|++|+.|.+.+=.+..-.  ..+.+|+
T Consensus       145 ~~LPsL~sL~i~~~~~~---~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~  220 (699)
T KOG3665|consen  145 TMLPSLRSLVISGRQFD---NDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLK  220 (699)
T ss_pred             hhCcccceEEecCceec---chhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhccc
Confidence            56778888888776554   223445557788888888888887776 56778888888877775554322  3567788


Q ss_pred             CCcEEEcc-cCCccccch-------hhccCccCcEEEeeCCCC
Q 037494          219 NLETLEMP-AGYIDHSPE-------GIWMMQKLMHLNFDSITL  253 (394)
Q Consensus       219 ~L~~L~l~-~~~l~~lp~-------~i~~l~~L~~L~l~~~~~  253 (394)
                      +|++||+| . ....-+.       .-..+|+||.||.+ ++.
T Consensus       221 ~L~vLDIS~~-~~~~~~~ii~qYlec~~~LpeLrfLDcS-gTd  261 (699)
T KOG3665|consen  221 KLRVLDISRD-KNNDDTKIIEQYLECGMVLPELRFLDCS-GTD  261 (699)
T ss_pred             CCCeeecccc-ccccchHHHHHHHHhcccCccccEEecC-Ccc
Confidence            88888887 4 2111111       11237777888777 543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.77  E-value=1.2e-05  Score=71.04  Aligned_cols=83  Identities=19%  Similarity=0.047  Sum_probs=48.2

Q ss_pred             CCCCCccEEEEecCCCccchhcc-hhHHhccCCceeEEEcCCCCCCCCcccc-cCcccccEEecCCCCCc--cccccccC
Q 037494          141 QSDMYLQSFLNHSSESDHLALID-CENFCENFKYLRVLNWGSAVLDQFPPGL-ENLFLLKYLQLNIPTLK--CLPLLICT  216 (394)
Q Consensus       141 ~~~~~lr~L~l~~~~~~~~~~~~-l~~~~~~l~~L~~L~l~~~~~~~lp~~i-~~l~~L~~L~l~~~~l~--~lp~~l~~  216 (394)
                      ..++.++.+++-+|.+.   .|. +..++.+++.|++|+++.|.+...-... ..+++|+.|-|.++.+.  .....+..
T Consensus        68 ~~~~~v~elDL~~N~iS---dWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~  144 (418)
T KOG2982|consen   68 SSVTDVKELDLTGNLIS---DWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDD  144 (418)
T ss_pred             HHhhhhhhhhcccchhc---cHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhc
Confidence            45666777777766664   332 2555577777777777777655222222 34567777777766443  34444555


Q ss_pred             CCCCcEEEcc
Q 037494          217 LLNLETLEMP  226 (394)
Q Consensus       217 l~~L~~L~l~  226 (394)
                      ++.++.|.++
T Consensus       145 lP~vtelHmS  154 (418)
T KOG2982|consen  145 LPKVTELHMS  154 (418)
T ss_pred             chhhhhhhhc
Confidence            6556655555

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.76  E-value=3.7e-07  Score=89.17  Aligned_cols=121  Identities=19%  Similarity=0.163  Sum_probs=71.5

Q ss_pred             ceeEEEcCCCCCCCCcccccCcccccEEecCCCCCccccccccCCCCCcEEEcc-cCCccccch-hhccCccCcEEEeeC
Q 037494          173 YLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPE-GIWMMQKLMHLNFDS  250 (394)
Q Consensus       173 ~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~-~i~~l~~L~~L~l~~  250 (394)
                      .|.+.+.++|.+.-+-.++.-++.|+.|+|++|++.+.- .+..++.|++|||+ | .+..+|. +.... +|+.|.++ 
T Consensus       165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc-~L~~L~lr-  240 (1096)
T KOG1859|consen  165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYN-CLRHVPQLSMVGC-KLQLLNLR-  240 (1096)
T ss_pred             hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccc-hhccccccchhhh-hheeeeec-
Confidence            344455555555544555666667777777777666554 55666677777777 6 6666653 11222 26666776 


Q ss_pred             CCCCCCCCCCCCCCCcCceeCccccC---CCcchhcCCCCCCCeEEEeecC
Q 037494          251 ITLPAPPKNYSSSLKNLIFISALHPS---SCTPDILSRLPTVQTLRISGDL  298 (394)
Q Consensus       251 ~~~~~~~p~~l~~l~~L~~L~~~~~~---~~~~~~l~~l~~L~~L~l~~~~  298 (394)
                      +|.+..+ .++.+|.+|+.|++++|-   -...+-+..|..|+.|++.+|+
T Consensus       241 nN~l~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP  290 (1096)
T KOG1859|consen  241 NNALTTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP  290 (1096)
T ss_pred             ccHHHhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence            6665554 356666777777666654   2233344555566666776665

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.76  E-value=5e-06  Score=65.02  Aligned_cols=88  Identities=16%  Similarity=0.115  Sum_probs=60.0

Q ss_pred             ccCCceeEEEcCCCCCCCCcccccCc-ccccEEecCCCCCccccccccCCCCCcEEEcc-cCCccccchhhccCccCcEE
Q 037494          169 ENFKYLRVLNWGSAVLDQFPPGLENL-FLLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHL  246 (394)
Q Consensus       169 ~~l~~L~~L~l~~~~~~~lp~~i~~l-~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L  246 (394)
                      .+...|...++++|.+.++|+.+... +.++.|++++|.+.++|.++..++.|+.|+++ | .+...|..+..|.+|-.|
T Consensus        50 ~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N-~l~~~p~vi~~L~~l~~L  128 (177)
T KOG4579|consen   50 SKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFN-PLNAEPRVIAPLIKLDML  128 (177)
T ss_pred             hCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccC-ccccchHHHHHHHhHHHh
Confidence            55566667777777777777655433 36677777777777777777777777777777 6 666667666667777777


Q ss_pred             EeeCCCCCCCCC
Q 037494          247 NFDSITLPAPPK  258 (394)
Q Consensus       247 ~l~~~~~~~~~p  258 (394)
                      +.. ++....+|
T Consensus       129 ds~-~na~~eid  139 (177)
T KOG4579|consen  129 DSP-ENARAEID  139 (177)
T ss_pred             cCC-CCccccCc
Confidence            766 66555554

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.63  E-value=4.3e-07  Score=88.77  Aligned_cols=113  Identities=19%  Similarity=0.125  Sum_probs=49.5

Q ss_pred             CccccchhhccCccCcEEEeeCCCCCCCCCCCCCCCCcCceeCccccCCCcchhcCCC-CCCCeEEEeecCCccccchhh
Q 037494          229 YIDHSPEGIWMMQKLMHLNFDSITLPAPPKNYSSSLKNLIFISALHPSSCTPDILSRL-PTVQTLRISGDLSHYHSGVSK  307 (394)
Q Consensus       229 ~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~  307 (394)
                      .+..+..++.-++.|++|+++ +|...+.- .+..++.|++|+++.|....++.++.- .+|..|.+++|.   ...+ .
T Consensus       175 ~L~~mD~SLqll~ale~LnLs-hNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~---l~tL-~  248 (1096)
T KOG1859|consen  175 RLVLMDESLQLLPALESLNLS-HNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNA---LTTL-R  248 (1096)
T ss_pred             hHHhHHHHHHHHHHhhhhccc-hhhhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeecccH---HHhh-h
Confidence            444444455555555555555 55544432 444555555555555541111111110 125555555553   1111 2


Q ss_pred             hhcCCCCCcEEEecCC--CCCCccCC-CCCCCCCCceEEEEecccC
Q 037494          308 SLCELHKLECLKLVNG--SKLSRMVL-SEYQFPPSLIQLSLSNTEL  350 (394)
Q Consensus       308 ~l~~~~~L~~L~l~~~--~~L~~L~p-~~~~~l~~L~~L~L~~~~l  350 (394)
                      .+.++++|+.|+++.+  ....+|.| |.   +..|+.|.|.+|.+
T Consensus       249 gie~LksL~~LDlsyNll~~hseL~pLws---Ls~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  249 GIENLKSLYGLDLSYNLLSEHSELEPLWS---LSSLIVLWLEGNPL  291 (1096)
T ss_pred             hHHhhhhhhccchhHhhhhcchhhhHHHH---HHHHHHHhhcCCcc
Confidence            3444555555555541  11122213 33   44555555655554

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.57  E-value=3.8e-06  Score=65.70  Aligned_cols=103  Identities=20%  Similarity=0.188  Sum_probs=82.5

Q ss_pred             CceeEEEcCCCCCCCCc---ccccCcccccEEecCCCCCccccccccC-CCCCcEEEcc-cCCccccchhhccCccCcEE
Q 037494          172 KYLRVLNWGSAVLDQFP---PGLENLFLLKYLQLNIPTLKCLPLLICT-LLNLETLEMP-AGYIDHSPEGIWMMQKLMHL  246 (394)
Q Consensus       172 ~~L~~L~l~~~~~~~lp---~~i~~l~~L~~L~l~~~~l~~lp~~l~~-l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L  246 (394)
                      +.+..++|+.|.+-.++   ..+....+|+..++++|.++++|+.+.. .+.+++|++. | .+.++|..+..++.|+.|
T Consensus        27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~l  105 (177)
T KOG4579|consen   27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSL  105 (177)
T ss_pred             HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhc
Confidence            44556788888766554   4455667888899999999999988764 4589999999 8 999999999999999999


Q ss_pred             EeeCCCCCCCCCCCCCCCCcCceeCccccC
Q 037494          247 NFDSITLPAPPKNYSSSLKNLIFISALHPS  276 (394)
Q Consensus       247 ~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~  276 (394)
                      +++ .|++...|.-+..|.++-.|....+.
T Consensus       106 Nl~-~N~l~~~p~vi~~L~~l~~Lds~~na  134 (177)
T KOG4579|consen  106 NLR-FNPLNAEPRVIAPLIKLDMLDSPENA  134 (177)
T ss_pred             ccc-cCccccchHHHHHHHhHHHhcCCCCc
Confidence            999 99988888877777777777655443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.41  E-value=0.00025  Score=59.41  Aligned_cols=97  Identities=19%  Similarity=0.157  Sum_probs=40.6

Q ss_pred             cEEecCCCCCccccccccCCCCCcEEEcc-cCCccccchhhcc-CccCcEEEeeCCCCCCCCC--CCCCCCCcCceeCcc
Q 037494          198 KYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWM-MQKLMHLNFDSITLPAPPK--NYSSSLKNLIFISAL  273 (394)
Q Consensus       198 ~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~-l~~L~~L~l~~~~~~~~~p--~~l~~l~~L~~L~~~  273 (394)
                      ..+||++|.+..++ .+..++.|.+|.+. | .+..+.+.+.. +++|..|.+. +|.+.++-  ..+..++.|++|.+.
T Consensus        45 d~iDLtdNdl~~l~-~lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~Lt-nNsi~~l~dl~pLa~~p~L~~Ltll  121 (233)
T KOG1644|consen   45 DAIDLTDNDLRKLD-NLPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILT-NNSIQELGDLDPLASCPKLEYLTLL  121 (233)
T ss_pred             ceecccccchhhcc-cCCCccccceEEecCC-cceeeccchhhhccccceEEec-CcchhhhhhcchhccCCccceeeec
Confidence            34444444444332 23344445555554 4 44444333332 3345555554 44433221  123344444444444


Q ss_pred             ccC-----CCcchhcCCCCCCCeEEEeec
Q 037494          274 HPS-----SCTPDILSRLPTVQTLRISGD  297 (394)
Q Consensus       274 ~~~-----~~~~~~l~~l~~L~~L~l~~~  297 (394)
                      +++     ....--+..+++|+.|++...
T Consensus       122 ~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  122 GNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             CCchhcccCceeEEEEecCcceEeehhhh
Confidence            443     111122344555555555444

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.08  E-value=0.00039  Score=60.95  Aligned_cols=207  Identities=14%  Similarity=0.100  Sum_probs=95.6

Q ss_pred             CCceeEEEcCCCCCC-----CCcccccCcccccEEecCCCC---Cc-ccc-------ccccCCCCCcEEEcc-cCCcccc
Q 037494          171 FKYLRVLNWGSAVLD-----QFPPGLENLFLLKYLQLNIPT---LK-CLP-------LLICTLLNLETLEMP-AGYIDHS  233 (394)
Q Consensus       171 l~~L~~L~l~~~~~~-----~lp~~i~~l~~L~~L~l~~~~---l~-~lp-------~~l~~l~~L~~L~l~-~~~l~~l  233 (394)
                      +..+..++++||.|.     .+...|.+-.+|+..+++.-.   .+ ++|       +.+-++++|+..+|+ |..-.+.
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~  108 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF  108 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence            455555555555543     233444444555555554411   11 222       233456666666666 5333333


Q ss_pred             ch----hhccCccCcEEEeeCCCCCCCCCCC-C-------------CCCCcCceeCccccC-CC-----cchhcCCCCCC
Q 037494          234 PE----GIWMMQKLMHLNFDSITLPAPPKNY-S-------------SSLKNLIFISALHPS-SC-----TPDILSRLPTV  289 (394)
Q Consensus       234 p~----~i~~l~~L~~L~l~~~~~~~~~p~~-l-------------~~l~~L~~L~~~~~~-~~-----~~~~l~~l~~L  289 (394)
                      |+    -|.+-+.|.||.++ +|....+..+ |             .+-+.|++.....+. ..     ....+..-.+|
T Consensus       109 ~e~L~d~is~~t~l~HL~l~-NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~l  187 (388)
T COG5238         109 PEELGDLISSSTDLVHLKLN-NNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENL  187 (388)
T ss_pred             chHHHHHHhcCCCceeEEee-cCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCc
Confidence            33    24445666666666 6554333211 1             122334444443333 11     11123333466


Q ss_pred             CeEEEeecCC--cc-ccchhhhhcCCCCCcEEEecCCCCCCccC----C-CCCCCCCCceEEEEecccCCCCCccc----
Q 037494          290 QTLRISGDLS--HY-HSGVSKSLCELHKLECLKLVNGSKLSRMV----L-SEYQFPPSLIQLSLSNTELMEDPMPM----  357 (394)
Q Consensus       290 ~~L~l~~~~~--~~-~~~~~~~l~~~~~L~~L~l~~~~~L~~L~----p-~~~~~l~~L~~L~L~~~~l~~~~~~~----  357 (394)
                      +.+.+..|+-  .. ..-+...+..+++|+.|+|.++ .+...-    . .+.. -+.|+.|.+.+|-++......    
T Consensus       188 k~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDN-tft~~gS~~La~al~~-W~~lrEL~lnDClls~~G~~~v~~~  265 (388)
T COG5238         188 KEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDN-TFTLEGSRYLADALCE-WNLLRELRLNDCLLSNEGVKSVLRR  265 (388)
T ss_pred             eeEEeeecCcCcchhHHHHHHHHHHhCcceeeecccc-chhhhhHHHHHHHhcc-cchhhhccccchhhccccHHHHHHH
Confidence            7777776651  00 1111223445567777777652 111110    1 1222 234677777777655444322    


Q ss_pred             c--cCCCCCCeEEEecccccCceeE
Q 037494          358 L--ERLPRLQVMKLKRNSYFGRKLA  380 (394)
Q Consensus       358 l--~~l~~L~~L~l~~n~~~~~~~~  380 (394)
                      +  ...|+|..|...+|...+..+.
T Consensus       266 f~e~~~p~l~~L~~~Yne~~~~~i~  290 (388)
T COG5238         266 FNEKFVPNLMPLPGDYNERRGGIIL  290 (388)
T ss_pred             hhhhcCCCccccccchhhhcCceee
Confidence            2  1356677777666665554443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.87  E-value=0.0017  Score=54.56  Aligned_cols=102  Identities=22%  Similarity=0.142  Sum_probs=64.0

Q ss_pred             CceeEEEcCCCCCCCCcccccCcccccEEecCCCCCccccccccC-CCCCcEEEcc-cCCccccch--hhccCccCcEEE
Q 037494          172 KYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICT-LLNLETLEMP-AGYIDHSPE--GIWMMQKLMHLN  247 (394)
Q Consensus       172 ~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~l~~-l~~L~~L~l~-~~~l~~lp~--~i~~l~~L~~L~  247 (394)
                      .....+|+++|.+..++ .+..+..|.+|.+++|.|..+-+.+.. +++|.+|.+. | .+.++.+  .+..+++|++|.
T Consensus        42 d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             cccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccceee
Confidence            34456677777655443 245566777777777777766655543 4567777777 5 6655532  355677778887


Q ss_pred             eeCCCCCCCCCCC----CCCCCcCceeCccccC
Q 037494          248 FDSITLPAPPKNY----SSSLKNLIFISALHPS  276 (394)
Q Consensus       248 l~~~~~~~~~p~~----l~~l~~L~~L~~~~~~  276 (394)
                      +- +|+...-..-    +..+++|++|+.....
T Consensus       120 ll-~Npv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  120 LL-GNPVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             ec-CCchhcccCceeEEEEecCcceEeehhhhh
Confidence            77 7664443321    5677788888777665

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=96.70  E-value=0.00012  Score=67.75  Aligned_cols=225  Identities=17%  Similarity=0.104  Sum_probs=122.7

Q ss_pred             CCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCC-CCC--CcccccCcccccEEecCCCC-----------
Q 037494          141 QSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAV-LDQ--FPPGLENLFLLKYLQLNIPT-----------  206 (394)
Q Consensus       141 ~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~-~~~--lp~~i~~l~~L~~L~l~~~~-----------  206 (394)
                      ..+++++.+.+..+....  +..+..+...+++|.+|+++.+. ++.  +-.-....+.++.+.+.||.           
T Consensus       187 ~~C~~l~~l~L~~c~~iT--~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~  264 (483)
T KOG4341|consen  187 RYCRKLRHLNLHSCSSIT--DVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAA  264 (483)
T ss_pred             HhcchhhhhhhcccchhH--HHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHh
Confidence            567788888777754432  22334444667778888887765 332  22222233334444444331           


Q ss_pred             ----------------Ccccc--ccccCCCCCcEEEcc-cCCccccch-h-hccCccCcEEEeeCCCC-CCCCC-CCC-C
Q 037494          207 ----------------LKCLP--LLICTLLNLETLEMP-AGYIDHSPE-G-IWMMQKLMHLNFDSITL-PAPPK-NYS-S  262 (394)
Q Consensus       207 ----------------l~~lp--~~l~~l~~L~~L~l~-~~~l~~lp~-~-i~~l~~L~~L~l~~~~~-~~~~p-~~l-~  262 (394)
                                      ++...  .--..+..||+|+.+ +.++...+- . ..+-.+|+.|.++ +|. +...- ..+ .
T Consensus       265 ~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~-~c~~fsd~~ft~l~r  343 (483)
T KOG4341|consen  265 AYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELS-GCQQFSDRGFTMLGR  343 (483)
T ss_pred             ccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEecc-ccchhhhhhhhhhhc
Confidence                            11100  001235677888887 545544331 2 2245788888888 776 33221 112 3


Q ss_pred             CCCcCceeCccccC----CCcchhcCCCCCCCeEEEeecCC---ccccchhhhhcCCCCCcEEEecCCCCCCccCC-CCC
Q 037494          263 SLKNLIFISALHPS----SCTPDILSRLPTVQTLRISGDLS---HYHSGVSKSLCELHKLECLKLVNGSKLSRMVL-SEY  334 (394)
Q Consensus       263 ~l~~L~~L~~~~~~----~~~~~~l~~l~~L~~L~l~~~~~---~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p-~~~  334 (394)
                      +...|+.+.+..+.    .....--.+.+.|+.|.+++|..   +....+...-..+..|+.+.+++||.+.+-.- .+.
T Consensus       344 n~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~  423 (483)
T KOG4341|consen  344 NCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLS  423 (483)
T ss_pred             CChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHh
Confidence            45677777777776    11222223457788888887761   11112233445667888888888775543211 344


Q ss_pred             CCCCCceEEEEecccCC-CCCcccc-cCCCCCCeEEE
Q 037494          335 QFPPSLIQLSLSNTELM-EDPMPML-ERLPRLQVMKL  369 (394)
Q Consensus       335 ~~l~~L~~L~L~~~~l~-~~~~~~l-~~l~~L~~L~l  369 (394)
                      . +++|+.+++-+|+-. ......+ .++|+++...+
T Consensus       424 ~-c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~  459 (483)
T KOG4341|consen  424 I-CRNLERIELIDCQDVTKEAISRFATHLPNIKVHAY  459 (483)
T ss_pred             h-CcccceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence            4 778888888888532 2222333 46888777666

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.67  E-value=0.00017  Score=63.31  Aligned_cols=99  Identities=20%  Similarity=0.254  Sum_probs=71.0

Q ss_pred             CCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCcccccCcccccEEecCCCCCcccc--ccccCCCC
Q 037494          142 SDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLP--LLICTLLN  219 (394)
Q Consensus       142 ~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp--~~l~~l~~  219 (394)
                      ++.+++.|.+.++...     ++ .+..+|+.|++|.|+-|+++.+-+ +..+++|+.|.|+.|.|..+-  ..+.++++
T Consensus        17 dl~~vkKLNcwg~~L~-----DI-sic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN~I~sldEL~YLknlps   89 (388)
T KOG2123|consen   17 DLENVKKLNCWGCGLD-----DI-SICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKNCIESLDELEYLKNLPS   89 (388)
T ss_pred             HHHHhhhhcccCCCcc-----HH-HHHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHhcccccHHHHHHHhcCch
Confidence            3556777777787776     33 344889999999999999887643 778889999999998887664  34678888


Q ss_pred             CcEEEcc-cCCccccch-----hhccCccCcEEE
Q 037494          220 LETLEMP-AGYIDHSPE-----GIWMMQKLMHLN  247 (394)
Q Consensus       220 L~~L~l~-~~~l~~lp~-----~i~~l~~L~~L~  247 (394)
                      |++|-|. |....+-+.     .+.-||+|+.|+
T Consensus        90 Lr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   90 LRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            8888877 422222222     255678888886

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.65  E-value=0.0025  Score=56.00  Aligned_cols=229  Identities=17%  Similarity=0.082  Sum_probs=121.0

Q ss_pred             CCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCC----CCc-------ccccCcccccEEecCCCCCc-cc
Q 037494          143 DMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLD----QFP-------PGLENLFLLKYLQLNIPTLK-CL  210 (394)
Q Consensus       143 ~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~----~lp-------~~i~~l~~L~~L~l~~~~l~-~l  210 (394)
                      +..+..+.+++|.+..-....+...+.+-++|++.+++.-...    +++       +.+-++++|+..+|+.|.+. ..
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~  108 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF  108 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence            4555566666665543222223233355666666666544321    222       23345566777777766554 34


Q ss_pred             ccc----ccCCCCCcEEEcc-cCCccccch-hhc-------------cCccCcEEEeeCCCCCCCCCCC-----CCCCCc
Q 037494          211 PLL----ICTLLNLETLEMP-AGYIDHSPE-GIW-------------MMQKLMHLNFDSITLPAPPKNY-----SSSLKN  266 (394)
Q Consensus       211 p~~----l~~l~~L~~L~l~-~~~l~~lp~-~i~-------------~l~~L~~L~l~~~~~~~~~p~~-----l~~l~~  266 (394)
                      |+.    ++.-.+|++|.++ | .+..+.. -|+             .-|.|+..... .|++...|..     +..=.+
T Consensus       109 ~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vicg-rNRlengs~~~~a~~l~sh~~  186 (388)
T COG5238         109 PEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG-RNRLENGSKELSAALLESHEN  186 (388)
T ss_pred             chHHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEec-cchhccCcHHHHHHHHHhhcC
Confidence            433    4456667777777 5 5544321 122             24667777766 6665554432     111135


Q ss_pred             CceeCccccC--CC-----cchhcCCCCCCCeEEEeecCCc--cccchhhhhcCCCCCcEEEecCCC--------CCCcc
Q 037494          267 LIFISALHPS--SC-----TPDILSRLPTVQTLRISGDLSH--YHSGVSKSLCELHKLECLKLVNGS--------KLSRM  329 (394)
Q Consensus       267 L~~L~~~~~~--~~-----~~~~l~~l~~L~~L~l~~~~~~--~~~~~~~~l~~~~~L~~L~l~~~~--------~L~~L  329 (394)
                      |+++.+..++  ..     ....+..+.+|+.|++..|.-.  ....+...++.++.|+.|.+.+|-        -++.+
T Consensus       187 lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f  266 (388)
T COG5238         187 LKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRF  266 (388)
T ss_pred             ceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHh
Confidence            6666666665  11     1234556788889999888611  112344567778888999888751        01111


Q ss_pred             CCCCCCCCCCceEEEEecccCCCCCccc-----c--cCCCCCCeEEEecccccC
Q 037494          330 VLSEYQFPPSLIQLSLSNTELMEDPMPM-----L--ERLPRLQVMKLKRNSYFG  376 (394)
Q Consensus       330 ~p~~~~~l~~L~~L~L~~~~l~~~~~~~-----l--~~l~~L~~L~l~~n~~~~  376 (394)
                        .-.. .|+|..|-..+|.+....+..     +  ..+|-|..|.+.+|.+..
T Consensus       267 --~e~~-~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E  317 (388)
T COG5238         267 --NEKF-VPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE  317 (388)
T ss_pred             --hhhc-CCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence              0011 456666666666543332211     1  356777777776676543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.56  E-value=0.00066  Score=59.18  Aligned_cols=107  Identities=18%  Similarity=0.233  Sum_probs=67.4

Q ss_pred             CCCCCcCceeCccccCCCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCccC--CCCCCCCC
Q 037494          261 SSSLKNLIFISALHPSSCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMV--LSEYQFPP  338 (394)
Q Consensus       261 l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~--p~~~~~l~  338 (394)
                      .-.+..|+.|++.++.......+..|++|+.|.++.|.......++-....+++|++|++++ +.++-+.  +.+.. +.
T Consensus        39 ~d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~-Nki~~lstl~pl~~-l~  116 (260)
T KOG2739|consen   39 TDEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSG-NKIKDLSTLRPLKE-LE  116 (260)
T ss_pred             cccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecC-Cccccccccchhhh-hc
Confidence            34556677777777766666677888888888888884223334443444558888888887 4333321  23444 67


Q ss_pred             CceEEEEecccCCCCCc---ccccCCCCCCeEEE
Q 037494          339 SLIQLSLSNTELMEDPM---PMLERLPRLQVMKL  369 (394)
Q Consensus       339 ~L~~L~L~~~~l~~~~~---~~l~~l~~L~~L~l  369 (394)
                      +|..|++.+|..+...-   ..+.-+|+|++|+-
T Consensus       117 nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen  117 NLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG  150 (260)
T ss_pred             chhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence            78888888886443111   23455777877775

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=96.37  E-value=0.00014  Score=67.25  Aligned_cols=224  Identities=16%  Similarity=0.076  Sum_probs=111.8

Q ss_pred             CCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCC-CCC--CcccccCcccccEEecCCC-CCcccc-c-cccCC
Q 037494          144 MYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAV-LDQ--FPPGLENLFLLKYLQLNIP-TLKCLP-L-LICTL  217 (394)
Q Consensus       144 ~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~-~~~--lp~~i~~l~~L~~L~l~~~-~l~~lp-~-~l~~l  217 (394)
                      ..+|.|.+.++....  ...+..+-..+++++.|.+.++. +++  +-..-.....|+++++..| .++... . -...+
T Consensus       138 g~lk~LSlrG~r~v~--~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC  215 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVG--DSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGC  215 (483)
T ss_pred             cccccccccccccCC--cchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhh
Confidence            457777777776654  33344454677777777777776 331  1122234567777777774 344221 1 12346


Q ss_pred             CCCcEEEcc-cCCccc--cchhhccCccCcEEEeeCCCCCCCCCCCC----CCCCcCceeCccccC----CCcchhcCCC
Q 037494          218 LNLETLEMP-AGYIDH--SPEGIWMMQKLMHLNFDSITLPAPPKNYS----SSLKNLIFISALHPS----SCTPDILSRL  286 (394)
Q Consensus       218 ~~L~~L~l~-~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~~p~~l----~~l~~L~~L~~~~~~----~~~~~~l~~l  286 (394)
                      ++|++++++ |..+..  +-.-.....+++.+... +|.-... ..+    +....+.++++..|.    ......=..+
T Consensus       216 ~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~k-GC~e~~l-e~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c  293 (483)
T KOG4341|consen  216 RKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLK-GCLELEL-EALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGC  293 (483)
T ss_pred             hhHHHhhhccCchhhcCcchHHhccchhhhhhhhc-ccccccH-HHHHHHhccChHhhccchhhhccccchHHHHHhhhh
Confidence            777777777 644443  11122334445555555 4431111 001    112222333333333    1111111224


Q ss_pred             CCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCccC-CCC-CCCCCCceEEEEecccCCCCC-cccc-cCCC
Q 037494          287 PTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMV-LSE-YQFPPSLIQLSLSNTELMEDP-MPML-ERLP  362 (394)
Q Consensus       287 ~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~-p~~-~~~l~~L~~L~L~~~~l~~~~-~~~l-~~l~  362 (394)
                      ..|+.|..+++.......+-+-.....+|+.|-+++|.++.... ..+ .+ .+.|+.+++..|...... +..+ .++|
T Consensus       294 ~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn-~~~Le~l~~e~~~~~~d~tL~sls~~C~  372 (483)
T KOG4341|consen  294 HALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRN-CPHLERLDLEECGLITDGTLASLSRNCP  372 (483)
T ss_pred             hHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcC-ChhhhhhcccccceehhhhHhhhccCCc
Confidence            56677777776521111222223445678888887765544331 012 23 677888888877542222 2222 3678


Q ss_pred             CCCeEEEecc
Q 037494          363 RLQVMKLKRN  372 (394)
Q Consensus       363 ~L~~L~l~~n  372 (394)
                      .|+.|.++++
T Consensus       373 ~lr~lslshc  382 (483)
T KOG4341|consen  373 RLRVLSLSHC  382 (483)
T ss_pred             hhccCChhhh
Confidence            8888888754

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.05  E-value=0.0031  Score=55.11  Aligned_cols=105  Identities=19%  Similarity=0.190  Sum_probs=47.6

Q ss_pred             ccCCceeEEEcCCCCCCCCcccccCcccccEEecCCC--CCc-cccccccCCCCCcEEEcc-cCCccccc--hhhccCcc
Q 037494          169 ENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIP--TLK-CLPLLICTLLNLETLEMP-AGYIDHSP--EGIWMMQK  242 (394)
Q Consensus       169 ~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~--~l~-~lp~~l~~l~~L~~L~l~-~~~l~~lp--~~i~~l~~  242 (394)
                      ..+..|+.|++.+..++++. .+..|++|++|.++.|  .+. .++..+.++++|++|+++ | ++..+-  ..+..+++
T Consensus        40 d~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~pl~~l~n  117 (260)
T KOG2739|consen   40 DEFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRPLKELEN  117 (260)
T ss_pred             ccccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccchhhhhcc
Confidence            44445555555555544221 1334556666666665  332 333333444666666666 4 433211  12344555


Q ss_pred             CcEEEeeCCCCCCCCCCC----CCCCCcCceeCccccC
Q 037494          243 LMHLNFDSITLPAPPKNY----SSSLKNLIFISALHPS  276 (394)
Q Consensus       243 L~~L~l~~~~~~~~~p~~----l~~l~~L~~L~~~~~~  276 (394)
                      |..|++. +|....+-..    +.-+++|..|+...+.
T Consensus       118 L~~Ldl~-n~~~~~l~dyre~vf~ll~~L~~LD~~dv~  154 (260)
T KOG2739|consen  118 LKSLDLF-NCSVTNLDDYREKVFLLLPSLKYLDGCDVD  154 (260)
T ss_pred             hhhhhcc-cCCccccccHHHHHHHHhhhhccccccccC
Confidence            5555555 5543332111    2234445555444443

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.94  E-value=0.0031  Score=32.98  Aligned_cols=18  Identities=33%  Similarity=0.543  Sum_probs=8.4

Q ss_pred             ccEEecCCCCCccccccc
Q 037494          197 LKYLQLNIPTLKCLPLLI  214 (394)
Q Consensus       197 L~~L~l~~~~l~~lp~~l  214 (394)
                      |++|++++|.++.+|+++
T Consensus         2 L~~Ldls~n~l~~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSSF   19 (22)
T ss_dssp             ESEEEETSSEESEEGTTT
T ss_pred             ccEEECCCCcCEeCChhh
Confidence            444444444444444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.67  E-value=0.00046  Score=60.71  Aligned_cols=103  Identities=19%  Similarity=0.178  Sum_probs=78.1

Q ss_pred             cCCceeEEEcCCCCCCCCcccccCcccccEEecCCCCCccccccccCCCCCcEEEcc-cCCccccch--hhccCccCcEE
Q 037494          170 NFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPE--GIWMMQKLMHL  246 (394)
Q Consensus       170 ~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~--~i~~l~~L~~L  246 (394)
                      .+.+.+.|++-||++..+. ....++.|+.|.|+=|+|+.+- .+..+++|+.|.|+ | .|..+.+  .+.++++|+.|
T Consensus        17 dl~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   17 DLENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhH
Confidence            3556677888888887653 2457888999999999999884 67789999999999 8 7877754  57789999999


Q ss_pred             EeeCCCC-CCCCCCC-----CCCCCcCceeCccccC
Q 037494          247 NFDSITL-PAPPKNY-----SSSLKNLIFISALHPS  276 (394)
Q Consensus       247 ~l~~~~~-~~~~p~~-----l~~l~~L~~L~~~~~~  276 (394)
                      .+. .|+ ...-+..     +..|++|+.|+-....
T Consensus        94 WL~-ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~Vt  128 (388)
T KOG2123|consen   94 WLD-ENPCCGEAGQNYRRKVLRVLPNLKKLDNVPVT  128 (388)
T ss_pred             hhc-cCCcccccchhHHHHHHHHcccchhccCcccc
Confidence            998 877 4444433     5678888888765543

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.45  E-value=0.0057  Score=31.98  Aligned_cols=22  Identities=27%  Similarity=0.445  Sum_probs=18.2

Q ss_pred             ceeEEEcCCCCCCCCcccccCc
Q 037494          173 YLRVLNWGSAVLDQFPPGLENL  194 (394)
Q Consensus       173 ~L~~L~l~~~~~~~lp~~i~~l  194 (394)
                      +|++|++++|.++.+|+.+++|
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~~l   22 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFSNL   22 (22)
T ss_dssp             TESEEEETSSEESEEGTTTTT-
T ss_pred             CccEEECCCCcCEeCChhhcCC
Confidence            5899999999999999877653

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.56  E-value=0.0049  Score=51.85  Aligned_cols=34  Identities=29%  Similarity=0.453  Sum_probs=22.0

Q ss_pred             CCCceEEEEecc-cCCCCCcccccCCCCCCeEEEe
Q 037494          337 PPSLIQLSLSNT-ELMEDPMPMLERLPRLQVMKLK  370 (394)
Q Consensus       337 l~~L~~L~L~~~-~l~~~~~~~l~~l~~L~~L~l~  370 (394)
                      .++|+.|+|++| +|+...+..+.++++|+.|.+.
T Consensus       150 ~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~  184 (221)
T KOG3864|consen  150 APSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLY  184 (221)
T ss_pred             ccchheeeccCCCeechhHHHHHHHhhhhHHHHhc
Confidence            566777777766 4555555666667777777663

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.24  E-value=0.027  Score=27.29  Aligned_cols=16  Identities=38%  Similarity=0.490  Sum_probs=5.6

Q ss_pred             cccEEecCCCCCcccc
Q 037494          196 LLKYLQLNIPTLKCLP  211 (394)
Q Consensus       196 ~L~~L~l~~~~l~~lp  211 (394)
                      +|+.|++++|.++++|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            3444455444444443

...

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=93.72  E-value=0.013  Score=57.66  Aligned_cols=170  Identities=26%  Similarity=0.205  Sum_probs=94.8

Q ss_pred             CcccccEEecCCC-CCcc--ccccccCCCCCcEEEcc-c-CCccccc----hhhccCccCcEEEeeCCCC-CCCCC-CCC
Q 037494          193 NLFLLKYLQLNIP-TLKC--LPLLICTLLNLETLEMP-A-GYIDHSP----EGIWMMQKLMHLNFDSITL-PAPPK-NYS  261 (394)
Q Consensus       193 ~l~~L~~L~l~~~-~l~~--lp~~l~~l~~L~~L~l~-~-~~l~~lp----~~i~~l~~L~~L~l~~~~~-~~~~p-~~l  261 (394)
                      ..+.|+.|.+.++ .+..  +-+.....++|+.|+++ + ......+    .....+.+|+.|+++ .+. ....- ..+
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~-~~~~isd~~l~~l  264 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLS-GCGLVTDIGLSAL  264 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchh-hhhccCchhHHHH
Confidence            3677888888876 4544  33456678899999987 3 1111111    223356888899988 766 22221 112


Q ss_pred             C-CCCcCceeCccccC----CCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecC---CCCCCccC---
Q 037494          262 S-SLKNLIFISALHPS----SCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVN---GSKLSRMV---  330 (394)
Q Consensus       262 ~-~l~~L~~L~~~~~~----~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~---~~~L~~L~---  330 (394)
                      + .+++|++|.+..|.    .........+++|+.|++++|.......+......+++|+.|.+..   |+.++.+.   
T Consensus       265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~  344 (482)
T KOG1947|consen  265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSG  344 (482)
T ss_pred             HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHH
Confidence            2 36788888866665    2233344567789999999887221222333344455555555433   22222211   


Q ss_pred             ---------C--CCCCCCCCceEEEEecccCCCCCc-ccccCCCCC
Q 037494          331 ---------L--SEYQFPPSLIQLSLSNTELMEDPM-PMLERLPRL  364 (394)
Q Consensus       331 ---------p--~~~~~l~~L~~L~L~~~~l~~~~~-~~l~~l~~L  364 (394)
                               .  .... +++++.+.+..|....... ..+.++|+|
T Consensus       345 ~~~~~~d~~~~~~~~~-~~~l~~~~l~~~~~~~~~~~~~l~gc~~l  389 (482)
T KOG1947|consen  345 LLTLTSDDLAELILRS-CPKLTDLSLSYCGISDLGLELSLRGCPNL  389 (482)
T ss_pred             hhccCchhHhHHHHhc-CCCcchhhhhhhhccCcchHHHhcCCccc
Confidence                     1  3334 6777777777776333331 334556655

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.21  E-value=0.0027  Score=54.55  Aligned_cols=86  Identities=17%  Similarity=0.071  Sum_probs=59.4

Q ss_pred             hHHhccCCceeEEEcCCCCCCCCcccccCcccccEEecCCCCCccccccccCCCCCcEEEcc-cCCccccchhhccCccC
Q 037494          165 ENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKL  243 (394)
Q Consensus       165 ~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L  243 (394)
                      -++ ..++..++||++.+.+..+-..++-++.|..|+++.+.++.+|+..+.+..+..+++. | ..+..|.+.++.+.+
T Consensus        36 ~ei-~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s~~k~~~~  113 (326)
T KOG0473|consen   36 REI-ASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKN-NHSQQPKSQKKEPHP  113 (326)
T ss_pred             hhh-hccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhcc-chhhCCccccccCCc
Confidence            344 5566677777777766666566666677777777777777777777777777777777 5 667777777777777


Q ss_pred             cEEEeeCCCC
Q 037494          244 MHLNFDSITL  253 (394)
Q Consensus       244 ~~L~l~~~~~  253 (394)
                      ++++.- .+.
T Consensus       114 k~~e~k-~~~  122 (326)
T KOG0473|consen  114 KKNEQK-KTE  122 (326)
T ss_pred             chhhhc-cCc
Confidence            777766 544

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=91.60  E-value=0.0057  Score=52.59  Aligned_cols=89  Identities=11%  Similarity=0.050  Sum_probs=75.7

Q ss_pred             CCc-ccccCcccccEEecCCCCCccccccccCCCCCcEEEcc-cCCccccchhhccCccCcEEEeeCCCCCCCCCCCCCC
Q 037494          186 QFP-PGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITLPAPPKNYSSS  263 (394)
Q Consensus       186 ~lp-~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~  263 (394)
                      .+| ..|.....-+.||++.|.+..+-..++.++.|+.|+++ + .+.-+|...+++..+++++.. .|.....|.+.+.
T Consensus        32 ~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~skn-q~~~~~~d~~q~~e~~~~~~~-~n~~~~~p~s~~k  109 (326)
T KOG0473|consen   32 EIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKN-QIKFLPKDAKQQRETVNAASH-KNNHSQQPKSQKK  109 (326)
T ss_pred             ccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHh-hHhhChhhHHHHHHHHHHHhh-ccchhhCCccccc
Confidence            444 55777888899999999888887788888999999999 9 999999999999999999998 7778888999999


Q ss_pred             CCcCceeCccccC
Q 037494          264 LKNLIFISALHPS  276 (394)
Q Consensus       264 l~~L~~L~~~~~~  276 (394)
                      ++.++.++.-.+.
T Consensus       110 ~~~~k~~e~k~~~  122 (326)
T KOG0473|consen  110 EPHPKKNEQKKTE  122 (326)
T ss_pred             cCCcchhhhccCc
Confidence            8888888765543

>smart00370 LRR Leucine-rich repeats, outliers

Probab=91.45  E-value=0.14  Score=27.73  Aligned_cols=19  Identities=32%  Similarity=0.219  Sum_probs=9.2

Q ss_pred             ccccEEecCCCCCcccccc
Q 037494          195 FLLKYLQLNIPTLKCLPLL  213 (394)
Q Consensus       195 ~~L~~L~l~~~~l~~lp~~  213 (394)
                      ++|++|++++|.++.+|++
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            3445555555555555443

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=91.45  E-value=0.14  Score=27.73  Aligned_cols=19  Identities=32%  Similarity=0.219  Sum_probs=9.2

Q ss_pred             ccccEEecCCCCCcccccc
Q 037494          195 FLLKYLQLNIPTLKCLPLL  213 (394)
Q Consensus       195 ~~L~~L~l~~~~l~~lp~~  213 (394)
                      ++|++|++++|.++.+|++
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            3445555555555555443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=90.03  E-value=0.66  Score=36.31  Aligned_cols=12  Identities=17%  Similarity=0.216  Sum_probs=3.8

Q ss_pred             ccCCceeEEEcC
Q 037494          169 ENFKYLRVLNWG  180 (394)
Q Consensus       169 ~~l~~L~~L~l~  180 (394)
                      .++++|+.+.+.
T Consensus         9 ~~~~~l~~i~~~   20 (129)
T PF13306_consen    9 YNCSNLESITFP   20 (129)
T ss_dssp             TT-TT--EEEET
T ss_pred             hCCCCCCEEEEC
Confidence            344444444443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=88.50  E-value=1.3  Score=34.55  Aligned_cols=98  Identities=18%  Similarity=0.201  Sum_probs=44.1

Q ss_pred             CCCCccEEEEecCCCccchhcch-hHHhccCCceeEEEcCCCCCCCCc-ccccCcccccEEecCCCCCcccccc-ccCCC
Q 037494          142 SDMYLQSFLNHSSESDHLALIDC-ENFCENFKYLRVLNWGSAVLDQFP-PGLENLFLLKYLQLNIPTLKCLPLL-ICTLL  218 (394)
Q Consensus       142 ~~~~lr~L~l~~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~l~~lp~~-l~~l~  218 (394)
                      .+++++.+.+... ..     .+ ...|..++.|+.+.+.++ +..++ .++.....++.+.+.. .+..++.. +..+.
T Consensus        10 ~~~~l~~i~~~~~-~~-----~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~   81 (129)
T PF13306_consen   10 NCSNLESITFPNT-IK-----KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT   81 (129)
T ss_dssp             T-TT--EEEETST--------EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred             CCCCCCEEEECCC-ee-----EeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccc
Confidence            4456666665431 11     22 333477777777777664 55554 4455666777777755 44444433 34477


Q ss_pred             CCcEEEcccCCccccch-hhccCccCcEEEee
Q 037494          219 NLETLEMPAGYIDHSPE-GIWMMQKLMHLNFD  249 (394)
Q Consensus       219 ~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~  249 (394)
                      +|+.+++.. .+..++. .+.+. +|+.+.+.
T Consensus        82 ~l~~i~~~~-~~~~i~~~~f~~~-~l~~i~~~  111 (129)
T PF13306_consen   82 NLKNIDIPS-NITEIGSSSFSNC-NLKEINIP  111 (129)
T ss_dssp             TECEEEETT-T-BEEHTTTTTT--T--EEE-T
T ss_pred             cccccccCc-cccEEchhhhcCC-CceEEEEC
Confidence            777777752 2344443 24444 66666654

>smart00370 LRR Leucine-rich repeats, outliers

Probab=87.65  E-value=0.51  Score=25.45  Aligned_cols=20  Identities=30%  Similarity=0.527  Sum_probs=13.2

Q ss_pred             CCCCcEEEcc-cCCccccchhh
Q 037494          217 LLNLETLEMP-AGYIDHSPEGI  237 (394)
Q Consensus       217 l~~L~~L~l~-~~~l~~lp~~i  237 (394)
                      +.+|++|+++ | .+..+|.++
T Consensus         1 L~~L~~L~L~~N-~l~~lp~~~   21 (26)
T smart00370        1 LPNLRELDLSNN-QLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCC-cCCcCCHHH
Confidence            3567777777 6 777776654

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=87.65  E-value=0.51  Score=25.45  Aligned_cols=20  Identities=30%  Similarity=0.527  Sum_probs=13.2

Q ss_pred             CCCCcEEEcc-cCCccccchhh
Q 037494          217 LLNLETLEMP-AGYIDHSPEGI  237 (394)
Q Consensus       217 l~~L~~L~l~-~~~l~~lp~~i  237 (394)
                      +.+|++|+++ | .+..+|.++
T Consensus         1 L~~L~~L~L~~N-~l~~lp~~~   21 (26)
T smart00369        1 LPNLRELDLSNN-QLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCC-cCCcCCHHH
Confidence            3567777777 6 777776654

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.68  E-value=0.093  Score=44.35  Aligned_cols=61  Identities=23%  Similarity=0.270  Sum_probs=25.8

Q ss_pred             CCCCCcCceeCccccC---CCcchhcCC-CCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecC
Q 037494          261 SSSLKNLIFISALHPS---SCTPDILSR-LPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVN  322 (394)
Q Consensus       261 l~~l~~L~~L~~~~~~---~~~~~~l~~-l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~  322 (394)
                      +..+++++.|.+.+|.   ....+-++. .++|+.|++++|. ...+.-...+..+++|+.|.|.+
T Consensus       121 L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~-rIT~~GL~~L~~lknLr~L~l~~  185 (221)
T KOG3864|consen  121 LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCP-RITDGGLACLLKLKNLRRLHLYD  185 (221)
T ss_pred             HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCC-eechhHHHHHHHhhhhHHHHhcC
Confidence            3444455555555554   112222222 2355555555554 12222223444455555555544

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=82.79  E-value=0.21  Score=48.99  Aligned_cols=112  Identities=24%  Similarity=0.186  Sum_probs=71.4

Q ss_pred             CCCcCceeCccccC--CC--cchhcCCCCCCCeEEEeec-C--CccccchhhhhcCCCCCcEEEecCCCCCCccC-CCCC
Q 037494          263 SLKNLIFISALHPS--SC--TPDILSRLPTVQTLRISGD-L--SHYHSGVSKSLCELHKLECLKLVNGSKLSRMV-LSEY  334 (394)
Q Consensus       263 ~l~~L~~L~~~~~~--~~--~~~~l~~l~~L~~L~l~~~-~--~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~-p~~~  334 (394)
                      ..++|+.|.+..+.  ..  ........++|+.|++.++ .  .............+++|+.|+++.+..+...- .++.
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            46788888888776  22  4456677889999999863 2  11111122334455788889988744343320 1222


Q ss_pred             CCCCCceEEEEeccc-CCCCCcccc-cCCCCCCeEEEecccc
Q 037494          335 QFPPSLIQLSLSNTE-LMEDPMPML-ERLPRLQVMKLKRNSY  374 (394)
Q Consensus       335 ~~l~~L~~L~L~~~~-l~~~~~~~l-~~l~~L~~L~l~~n~~  374 (394)
                      ..+++|+.|.+.+|. ++...+..+ ..+++|++|+++.+..
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence            226799999988887 555555554 4689999999986543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	394
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-09
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	5e-12
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	9e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 72.2 bits (176), Expect = 1e-13
 Identities = 55/286 (19%), Positives = 98/286 (34%), Gaps = 67/286 (23%)

Query: 2   YVQGEAILTVWRQIYSVMELPFHLKVYCIYLCVFCPSIEISTRQLCQLWIAEGFIPYNSE 61
           +V  + + T+     +V+E P   +     L VF PS  I T  L  +W          +
Sbjct: 349 HVNCDKLTTIIESSLNVLE-PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDV------IK 401

Query: 62  ETAEYYLKELIHRGFIQVSKRRAGGTIKACYVPSLVYYSLLLVAEKTRFVLMPNKEEESL 121
                 + +L     ++  K+    TI    +PS+  Y  L V  +  + L       S+
Sbjct: 402 SDVMVVVNKLHKYSLVE--KQPKESTI---SIPSI--YLELKVKLENEYAL-----HRSI 449

Query: 122 AT---VKRCFILEDLIEFISLEQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLN 178
                + + F  +DL         D Y  S + H     HL  I+     E         
Sbjct: 450 VDHYNIPKTFDSDDL----IPPYLDQYFYSHIGH-----HLKNIEHP---ERM------- 490

Query: 179 WGSAVLDQFPPGLENLFL-LKYLQLNI----PTLKCLPLLICTLLNLETLEMPAGYI-DH 232
                   F      +FL  ++L+  I            ++ TL  L+  +    YI D+
Sbjct: 491 ------TLFR----MVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYK---PYICDN 537

Query: 233 SPEGIWMMQKLMHLNFDSITLPAPPKN-YSSSLKNLIFISALHPSS 277
            P+   ++  ++   F    LP   +N   S   +L+ I+ +    
Sbjct: 538 DPKYERLVNAILD--F----LPKIEENLICSKYTDLLRIALMAEDE 577

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.9 bits (139), Expect = 3e-09
 Identities = 69/440 (15%), Positives = 120/440 (27%), Gaps = 139/440 (31%)

Query: 55  FIPYNSEETAEYY-----LKELIHRGFIQVSKRRAGGTIKACYVPSLVYYSLLLVAEKTR 109
           F  YN      Y      L EL     + +      G+ K             +  +   
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAKNVLIDG--VLGSGKTW-----------VALD--- 169

Query: 110 FVLMPNKEEESLA------TVKRCFILEDLIEFISLEQSDMYLQSFLNHSSESDHLALI- 162
            V +  K +  +        +K C   E ++E        +  Q   N +S SDH + I 
Sbjct: 170 -VCLSYKVQCKMDFKIFWLNLKNCNSPETVLE----MLQKLLYQIDPNWTSRSDHSSNIK 224

Query: 163 -DCENFCENFKY----------LRVLN--WGSAVLDQF---------------------- 187
               +     +           L VL     +   + F                      
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAA 284

Query: 188 ----------PPGL---ENL-FLLKYLQLNIPTL-----KCLPLLICTLLNLETLEMPA- 227
                        L   E    LLKYL      L        P  +  ++     +  A 
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS-IIAESIRDGLAT 343

Query: 228 -GYIDHSPEGIWMMQKLMHLNFDSITLPAPPKNYSSSLKNL-IFISALHPSSC--TPDIL 283
                H       +  ++  + + +     P  Y      L +F     P S      +L
Sbjct: 344 WDNWKHV--NCDKLTTIIESSLNVLE----PAEYRKMFDRLSVF-----PPSAHIPTILL 392

Query: 284 SRL---PTVQTLRISGDLSHYHSGVSK----SLCELHKL---ECLKLVNGSKLSRMVLSE 333
           S +        + +  +  H +S V K    S   +  +     +KL N   L R ++  
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH 452

Query: 334 YQFPPSLIQLSLSNTELMEDPMPM---------LERLPRLQVMKLKRNSYF-----GRKL 379
           Y  P      +  + +L+   +           L+ +   + M L R  +       +K+
Sbjct: 453 YNIP-----KTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKI 507

Query: 380 -----ACVGSGG-FPELQVL 393
                A   SG     LQ L
Sbjct: 508 RHDSTAWNASGSILNTLQQL 527

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591

 Score = 66.4 bits (162), Expect = 5e-12
 Identities = 35/207 (16%), Positives = 67/207 (32%), Gaps = 24/207 (11%)

Query: 17  SVMELPFHLKVYCIYLCVFCPSIEISTRQLCQLWIAEGFIPYNSEETAEYYLKELIHRGF 76
           SV  L   +K Y   L +    +++ T+ LC LW  E        E  E  L+E +++  
Sbjct: 371 SVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME-------TEEVEDILQEFVNKSL 423

Query: 77  IQVSKRRAGGTIKACYVPSLVYYSLLLVAEKTRFVLMPNKEEESLATVKRCFILEDLIEF 136
           +   +    G     Y+  L    +  + EK    L    ++      +         + 
Sbjct: 424 LFCDRN---GKSFRYYLHDLQ---VDFLTEKNCSQLQDLHKKIITQFQRYHQPHTLSPDQ 477

Query: 137 ISLEQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFL 196
               +  MY  +FL +     H  +   +   E    +  L+W  A  +   P       
Sbjct: 478 ----EDCMYWYNFLAY-----H--MASAKMHKELCALMFSLDWIKAKTELVGPAHLIHEF 526

Query: 197 LKYLQLNIPTLKCLPLLICTLLNLETL 223
           ++Y  +       +       L+L   
Sbjct: 527 VEYRHILDEKDCAVSENFQEFLSLNGH 553

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549

 Score = 59.2 bits (143), Expect = 9e-10
 Identities = 24/168 (14%), Positives = 46/168 (27%), Gaps = 20/168 (11%)

Query: 17  SVMELPFHLKVYCIYLCVFCPSIEISTRQLCQLWIAEGFIPYN--SEETAEYYLKELIHR 74
            V  L    +    +  V  P ++I  +    +   +         ++     LK L  R
Sbjct: 381 CVEVLSDEDRSALAFAVVMPPGVDIPVKLWSCVIPVDICSNEEEQLDDEVADRLKRLSKR 440

Query: 75  GFIQVSKRRAGGTIK--------ACYVPSLVYYSLLLVAEKTRFVLMPN----KEEESLA 122
           G +   KR    T K          +V      +  +   + R + + N      E  + 
Sbjct: 441 GALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTIANGISILEQRLLEIGNNNVSVPERHIP 500

Query: 123 TVKRCFILEDLIEFISLEQSDM------YLQSFLNHSSESDHLALIDC 164
           +  + F      E       +       + +    H    D L    C
Sbjct: 501 SHFQKFRRSSASEMYPKTTEETVIRPEDFPKFMQLHQKFYDSLKNFAC 548

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 51.0 bits (122), Expect = 4e-07
 Identities = 36/240 (15%), Positives = 71/240 (29%), Gaps = 25/240 (10%)

Query: 150 LNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNI---PT 206
               SE+    L   E    +    R           F    + L L   LQ  I   P 
Sbjct: 354 FGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPE 413

Query: 207 LKCLPLLICTLLNLETLEMPAGYIDHSPEGIWMMQKLMHLNFD--SITLPAPPKNYSSSL 264
           +K +       L    +      I    + I  + KL  + F     T      ++  + 
Sbjct: 414 MKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDAN 473

Query: 265 KNLIFISALHPSSCTPDILSRLPTVQTLRISGDLSHYH--SGVSKSLCELHKLECLKLV- 321
            +          S      S L  +  +    +L +    + +   L +L +L+ L +  
Sbjct: 474 SDYAKQYENEELS-----WSNLKDLTDV----ELYNCPNMTQLPDFLYDLPELQSLNIAC 524

Query: 322 -NGSKLSRMVLSEYQFP------PSLIQLSLSNTELMEDPMPM-LERLPRLQVMKLKRNS 373
             G   +++     +        P +    +    L E P    L+++ +L ++    N 
Sbjct: 525 NRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK 584

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 47.8 bits (114), Expect = 4e-06
 Identities = 50/246 (20%), Positives = 84/246 (34%), Gaps = 25/246 (10%)

Query: 138 SLEQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLF-- 195
            LE   + L  F N      +L   D     E    L +  +  A LD +   + +LF  
Sbjct: 226 GLEVHRLVLGEFRNEG----NLEKFDKSAL-EGLCNLTIEEFRLAYLDYYLDDIIDLFNC 280

Query: 196 --LLKYLQLNIPTLKCLPLLICTLLNLETLEMPAGYIDHSPEGIWMMQKLMHLNFDSITL 253
              +    L   T++ +          + LE+        P     ++ L  L F S   
Sbjct: 281 LTNVSSFSLVSVTIERVKDFSY-NFGWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKG 337

Query: 254 PAPPKNYSSSLKNLIFIS----ALHPSSCTPDILSRLPTVQTLRISG-DLSHYHSGVSKS 308
                     L +L F+      L    C         +++ L +S   +      +S +
Sbjct: 338 GNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT----MSSN 391

Query: 309 LCELHKLECLKLVNGSKLSRMV-LSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVM 367
              L +LE L     S L +M   S +    +LI L +S+T        +   L  L+V+
Sbjct: 392 FLGLEQLEHLDF-QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 450

Query: 368 KLKRNS 373
           K+  NS
Sbjct: 451 KMAGNS 456

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 47.3 bits (113), Expect = 6e-06
 Identities = 53/266 (19%), Positives = 89/266 (33%), Gaps = 26/266 (9%)

Query: 138 SLEQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFL- 196
            LE   + L  F N  +          ++  E    L +  +  A LD +   + +LF  
Sbjct: 226 GLEVHRLVLGEFRNEGNLEKFD-----KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNC 280

Query: 197 ---LKYLQLNIPTLKCLPLLICTLLNLETLEMPAGYIDHSPEGIWMMQKLMHLNFDSITL 253
              +    L   T++ +          + LE+        P     ++ L  L F S   
Sbjct: 281 LTNVSSFSLVSVTIERVKDFSY-NFGWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKG 337

Query: 254 PAPPKNYSSSLKNLIFIS----ALHPSSCTPDILSRLPTVQTLRISGDLSH-YHSGVSKS 308
                     L +L F+      L    C         +++ L    DLS      +S +
Sbjct: 338 GNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL----DLSFNGVITMSSN 391

Query: 309 LCELHKLECLKLVNGSKLSRMV-LSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVM 367
              L +LE L     S L +M   S +    +LI L +S+T        +   L  L+V+
Sbjct: 392 FLGLEQLEHLDF-QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 450

Query: 368 KLKRNSYFGRKLACVGSGGFPELQVL 393
           K+  NS+    L  +       L  L
Sbjct: 451 KMAGNSFQENFLPDI-FTELRNLTFL 475

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 41/217 (18%), Positives = 83/217 (38%), Gaps = 14/217 (6%)

Query: 164 CENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQL---NIPTLKCLPLLICTLLNL 220
                ++ K L   +              +L  L++L L    +    C         +L
Sbjct: 320 PTLKLKSLKRLTFTS----NKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSL 375

Query: 221 ETLEMPAGYIDHSPEGIWMMQKLMHLNFDS--ITLPAPPKNYSSSLKNLIF--ISALHPS 276
           + L++    +         +++L HL+F    +   +   +   SL+NLI+  IS  H  
Sbjct: 376 KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEF-SVFLSLRNLIYLDISHTHTR 434

Query: 277 SCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVLSEYQF 336
                I + L +++ L+++G+ S   + +     EL  L  L L +  +L ++  + +  
Sbjct: 435 VAFNGIFNGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDL-SQCQLEQLSPTAFNS 492

Query: 337 PPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNS 373
             SL  L++S+           + L  LQV+    N 
Sbjct: 493 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 529

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 40.8 bits (96), Expect = 6e-04
 Identities = 32/136 (23%), Positives = 47/136 (34%), Gaps = 19/136 (13%)

Query: 243 LMHLNFDSITLPAPPKNYSSSLKNLIF----ISALHPSSCTPDILSRLPTVQTLRISG-D 297
            M LNF  I     P N   S KNL      +  L   S         P +Q L +S  +
Sbjct: 14  CMELNFYKI-----PDNLPFSTKNLDLSFNPLRHLGSYS-----FFSFPELQVLDLSRCE 63

Query: 298 LSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPM 357
           +     G   +   L  L  L L  G+ +  + L  +    SL +L    T L       
Sbjct: 64  IQTIEDG---AYQSLSHLSTLIL-TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP 119

Query: 358 LERLPRLQVMKLKRNS 373
           +  L  L+ + +  N 
Sbjct: 120 IGHLKTLKELNVAHNL 135

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 25/235 (10%), Positives = 66/235 (28%), Gaps = 16/235 (6%)

Query: 150 LNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNI---PT 206
           L    E  +  L   +    N    +           F            ++  I   P 
Sbjct: 112 LGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQ 171

Query: 207 LKCLPLLICTLLNLETLEMPAGYIDHSPEGIWMMQKLMHLNFDSITLPAPPKNYSSSLKN 266
            K +       L    +   +  I    + +  + KL      +    A     +   +N
Sbjct: 172 QKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENEN 231

Query: 267 LIFISALHPSSCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECL-----KLV 321
             +                L  +  + +        + +   L  L +++ +     + +
Sbjct: 232 SEYAQQYKTE---DLKWDNLKDLTDVEVYN--CPNLTKLPTFLKALPEMQLINVACNRGI 286

Query: 322 NGSKL--SRMVLSEYQFPPSLIQLSLSNTELMEDPMPM-LERLPRLQVMKLKRNS 373
           +G +L      L++      +  + +    L   P+   L+++ +L +++   N 
Sbjct: 287 SGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQ 341

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 37/213 (17%), Positives = 76/213 (35%), Gaps = 26/213 (12%)

Query: 170 NFKYLRVLNWGSAVLDQFPPG-LENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMPAG 228
               L         +       L  LF ++YL L     +       +L +L  ++    
Sbjct: 270 WLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK----RSFTKQSISLASLPKID---- 321

Query: 229 YIDHSPEGIWMMQKLMHLNFDSITLPAPPKNYSSSLKNLIFIS----ALHPSSCTPDILS 284
                      ++ L HLN +   +P    N  + L NL ++S         + T +   
Sbjct: 322 -----DFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFV 376

Query: 285 RLPTV--QTLRISG-DLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMV-LSEYQFPPSL 340
            L       L ++   +S   S    +   L  LE L L   +++ + +   E++   ++
Sbjct: 377 SLAHSPLHILNLTKNKISKIESD---AFSWLGHLEVLDL-GLNEIGQELTGQEWRGLENI 432

Query: 341 IQLSLSNTELMEDPMPMLERLPRLQVMKLKRNS 373
            ++ LS  + ++        +P LQ + L+R +
Sbjct: 433 FEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVA 465

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 47/232 (20%), Positives = 83/232 (35%), Gaps = 16/232 (6%)

Query: 173 YLRVLNWGSAVLDQFPPG-LENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMPAGYID 231
            +  +N                   L+ L L    L  LP  +  L  L+ L + A   +
Sbjct: 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFE 314

Query: 232 HSPEGIWM-MQKLMHLNFD--SITLPAPPKNYSSSLKNLIFIS----ALHPSSCTPDILS 284
           +  +        L HL+    +  L         +L+NL  +      +  S C    L 
Sbjct: 315 NLCQISASNFPSLTHLSIKGNTKRLELGT-GCLENLENLRELDLSHDDIETSDCCNLQLR 373

Query: 285 RLPTVQTLRISG-DLSHYHSGVSKSLCELHKLECLKLVNGSKLSRM-VLSEYQFPPSLIQ 342
            L  +Q+L +S  +     +    +  E  +LE L L   ++L      S +Q    L  
Sbjct: 374 NLSHLQSLNLSYNEPLSLKTE---AFKECPQLELLDL-AFTRLKVKDAQSPFQNLHLLKV 429

Query: 343 LSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFGRKLACVGS-GGFPELQVL 393
           L+LS++ L      + + LP LQ + L+ N +    +    S      L++L
Sbjct: 430 LNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEIL 481

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 35/217 (16%), Positives = 64/217 (29%), Gaps = 18/217 (8%)

Query: 188 PPGLENLFLLKYLQL---NIPTLKCLPLLICTLLNLETLEMPAGYIDHSPEGIWMMQKLM 244
            P       LK L      I  L    +         +L +    I     G +      
Sbjct: 146 LPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQ 205

Query: 245 HLNFDS--ITLPAPPKNYSSSLKNLIFISALH-----PSSCTPDILSRLPTVQTLRISG- 296
            LNF      L       +S++++L   +         S    + L  + +V+++ +   
Sbjct: 206 SLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEM-SVESINLQKH 264

Query: 297 DLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMP 356
              +  S    +      L+ L L   + LS  + S      +L +L LS  +       
Sbjct: 265 YFFNISSN---TFHCFSGLQELDL-TATHLSE-LPSGLVGLSTLKKLVLSANKFENLCQI 319

Query: 357 MLERLPRLQVMKLKRNSYFGRKLACVGSGGFPELQVL 393
                P L  + +K N+                L+ L
Sbjct: 320 SASNFPSLTHLSIKGNTKRLELGTGC-LENLENLREL 355

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 37/242 (15%), Positives = 73/242 (30%), Gaps = 42/242 (17%)

Query: 146 LQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIP 205
                +HSS  ++L              L                          Q+   
Sbjct: 4   SHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETR 63

Query: 206 TLKCLPLLIC-----TLLNLETLEMPAGYIDHSPEGIWMMQKLMHLNFDSITLPAPPKNY 260
           T + L          T      LE+ +  +   P+  + +  L H+  D           
Sbjct: 64  TGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTID----------- 112

Query: 261 SSSLKNLIFISALHPSSCTPDILSRLPTVQTLRISG-DLSHYHSGVSKSLCELHKLECLK 319
           ++ L  L            PD + +   ++TL ++   L      +  S+  L++L  L 
Sbjct: 113 AAGLMEL------------PDTMQQFAGLETLTLARNPLRA----LPASIASLNRLRELS 156

Query: 320 LVNGSKLSR--------MVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKR 371
           +    +L+             E+Q   +L  L L  T +   P   +  L  L+ +K++ 
Sbjct: 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLP-ASIANLQNLKSLKIRN 215

Query: 372 NS 373
           + 
Sbjct: 216 SP 217

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 40/183 (21%), Positives = 66/183 (36%), Gaps = 24/183 (13%)

Query: 174 LRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMPAGYIDHS 233
              L   S  L QFP     L  L+++ ++   L  LP  +     LETL +    +   
Sbjct: 83  RVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRAL 142

Query: 234 PEGIWMMQKLMHLNFDS----ITLPA-----PPKNYSSSLKNLIFISALHPSSCT--PDI 282
           P  I  + +L  L+  +      LP              L NL  +  L  +     P  
Sbjct: 143 PASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLR-LEWTGIRSLPAS 201

Query: 283 LSRLPTVQTLRISG-DLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVLSEYQFPPSLI 341
           ++ L  +++L+I    LS     +  ++  L KLE L L   + L         +PP   
Sbjct: 202 IANLQNLKSLKIRNSPLSA----LGPAIHHLPKLEELDLRGCTALR-------NYPPIFG 250

Query: 342 QLS 344
             +
Sbjct: 251 GRA 253

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 42/214 (19%), Positives = 78/214 (36%), Gaps = 17/214 (7%)

Query: 170 NFKYLRVL----NWGSAVLDQFPPGLENLFLLKYLQL---NIPTLKCLPLLICTLLNLET 222
           +  +L+ L    N GS            L  L YL L    +    C         +L  
Sbjct: 326 DLPFLKSLTLTMNKGS-----ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRH 380

Query: 223 LEMPAGYIDHSPEGIWMMQKLMHLNFDSITLPAPPKNYS-SSLKNLIF--ISALHPSSCT 279
           L++              +++L HL+F   TL    +  +  SL+ L++  IS  +     
Sbjct: 381 LDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDF 440

Query: 280 PDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVLSEYQFPPS 339
             I   L ++ TL+++G+ S   + +S        L  L L +  +L ++    +     
Sbjct: 441 DGIFLGLTSLNTLKMAGN-SFKDNTLSNVFANTTNLTFLDL-SKCQLEQISWGVFDTLHR 498

Query: 340 LIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNS 373
           L  L++S+  L+        +L  L  +    N 
Sbjct: 499 LQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR 532

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 45/263 (17%), Positives = 76/263 (28%), Gaps = 40/263 (15%)

Query: 165 ENFCENFKYLRVLNWGSAVLDQF-------PPGLENLFLLKYLQLNIPTLKCLPLLICT- 216
           +   +N   L V                  P  +E L  +   +  +         I   
Sbjct: 222 KTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKF 281

Query: 217 --LLNLETLEMPAGYIDHSPEGIWMMQKLMHLNFDSITLPAPPKNYSSSLKNLIFISALH 274
             L N+  + +    I +  +      K   L+     L   P   +  L  L  ++   
Sbjct: 282 HCLANVSAMSLAGVSIKYLEDVPKHF-KWQSLSIIRCQLKQFP---TLDLPFLKSLTLTM 337

Query: 275 PSSCTPDILSRLPTVQTLRISG----------------------DLSH-YHSGVSKSLCE 311
                      LP++  L +S                       DLS      +S +   
Sbjct: 338 NKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMG 397

Query: 312 LHKLECLKLVNGSKLSRMV-LSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLK 370
           L +L+ L     S L R+   S +     L+ L +S T    D   +   L  L  +K+ 
Sbjct: 398 LEELQHLDF-QHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMA 456

Query: 371 RNSYFGRKLACVGSGGFPELQVL 393
            NS+    L+ V       L  L
Sbjct: 457 GNSFKDNTLSNV-FANTTNLTFL 478

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 40.8 bits (96), Expect = 7e-04
 Identities = 46/232 (19%), Positives = 80/232 (34%), Gaps = 27/232 (11%)

Query: 174 LRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMPAGYIDHS 233
            + L+     L QFP    +L  LK L L +     +      L +L  L++    +  S
Sbjct: 309 WQSLSIIRCQLKQFPTL--DLPFLKSLTLTMNKGS-ISFKKVALPSLSYLDLSRNALSFS 365

Query: 234 PEGIWMMQKLMHL-----NFDSITLPAPPKNYSSSLKNLIF----ISALHPSSCTPDILS 284
               +       L     +F+   + +        L++L F    +  +   S       
Sbjct: 366 GCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSA----FL 421

Query: 285 RLPTVQTLRISG-DLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVLSEY-QFPPSLIQ 342
            L  +  L IS  +      G       L  L  LK+  G+      LS       +L  
Sbjct: 422 SLEKLLYLDISYTNTKIDFDG---IFLGLTSLNTLKM-AGNSFKDNTLSNVFANTTNLTF 477

Query: 343 LSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFGRKLACVGSGGFPELQVLT 394
           L LS  +L +    + + L RLQ++ +  N      L  + S  + +L  L+
Sbjct: 478 LDLSKCQLEQISWGVFDTLHRLQLLNMSHN-----NLLFLDSSHYNQLYSLS 524

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 36/247 (14%), Positives = 76/247 (30%), Gaps = 26/247 (10%)

Query: 158 HLALIDCENFCENFKYLRVLNWGSAVLDQFPPG-LENLFLLKYLQLNIPTLKCLPLLICT 216
             + I   +F      L  L   +  L  +    L+++  + +L L++     L  +   
Sbjct: 135 TFSEIRRIDF-AGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFAD 193

Query: 217 LL-NLETLEMPAGYIDHSPEGIW----MMQKLMHLNFDSITLPAPPKNYSSSLKNLIFIS 271
           +L ++  LE+    +            +   +  L F    L     N    L   I   
Sbjct: 194 ILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYIL-- 251

Query: 272 ALHPSSCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKL----VNGSKLS 327
                  +               +   S         + EL K+E + +    +    L 
Sbjct: 252 -----ELSEVEFDDCTLNGLGDFNPSESD-------VVSELGKVETVTIRRLHIPQFYLF 299

Query: 328 RMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNS-YFGRKLACVGSGG 386
             + + Y     + ++++ N+++   P    + L  L+ + L  N             G 
Sbjct: 300 YDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGA 359

Query: 387 FPELQVL 393
           +P LQ L
Sbjct: 360 WPSLQTL 366

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 40.9 bits (96), Expect = 6e-04
 Identities = 34/255 (13%), Positives = 86/255 (33%), Gaps = 24/255 (9%)

Query: 136 FISLEQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLF 195
             S+   ++   +          +  +        F+   + +     L +    +  L 
Sbjct: 195 LSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELS 254

Query: 196 LLKYLQLNIPTLKCLPLLICT---------LLNLETLEMPAGYIDHSPEGIWM-MQKLMH 245
            +++    +  L                   + +  L +P  Y+ +    ++  ++K+  
Sbjct: 255 EVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKR 314

Query: 246 LNFDSITLPAPPKNYSSSLKNLIF-------ISALHPSSCTPDILSRLPTVQTLRISGDL 298
           +  ++  +   P ++S  LK+L F       +   +  +         P++QTL +S + 
Sbjct: 315 ITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSAC--KGAWPSLQTLVLSQNH 372

Query: 299 SHYHSGVSKSLCELHKLECLKLVNGSKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPML 358
                   + L  L  L  L + + +    M     Q+P  +  L+LS+T +        
Sbjct: 373 LRSMQKTGEILLTLKNLTSLDI-SRNTFHPM-PDSCQWPEKMRFLNLSSTGIRVVKT--- 427

Query: 359 ERLPRLQVMKLKRNS 373
                L+V+ +  N+
Sbjct: 428 CIPQTLEVLDVSNNN 442

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 41.7 bits (98), Expect = 3e-04
 Identities = 46/230 (20%), Positives = 86/230 (37%), Gaps = 32/230 (13%)

Query: 158 HLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTL 217
           H+A+I  + F +  + L+ L+     L         +  +  + L+   L  LP +  T 
Sbjct: 349 HIAIIQDQTF-KFLEKLQTLDLRDNALTTIH----FIPSIPDIFLSGNKLVTLPKINLTA 403

Query: 218 LNLETLEMPAGYIDHSPEGIWMMQKLMHL--------NFDSITLPAPPKNYSSSLKNLI- 268
             +   E     +D      + + ++ HL         F S +    P   + SL+ L  
Sbjct: 404 NLIHLSENRLENLDIL----YFLLRVPHLQILILNQNRFSSCSGDQTPSE-NPSLEQLFL 458

Query: 269 ---FISALHPSSCTPDILSRLPTVQTLRISG-DLSHYHSGVSKSLCELHKLECLKLVNGS 324
               +     +    D+   L  +Q L ++   L+    GV   L  L  L     +N +
Sbjct: 459 GENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGL----SLNSN 514

Query: 325 KLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSY 374
           +L+  VLS    P +L  L +S  +L+    P  +    L V+ +  N +
Sbjct: 515 RLT--VLSHNDLPANLEILDISRNQLL---APNPDVFVSLSVLDITHNKF 559

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 40.9 bits (96), Expect = 6e-04
 Identities = 42/212 (19%), Positives = 77/212 (36%), Gaps = 24/212 (11%)

Query: 174 LRVLNWGSAVLDQFPPG-LENLFLLKYLQLNIPTLKCLP-LLICTLLNLETLEMPAGYID 231
           L+ L  G   L          L  L+ L L    L  +P   +  L  L  L +    I+
Sbjct: 130 LKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN 189

Query: 232 HSPEGIWM-MQKLMHLNFDS---ITLPAPPKNYSSSLKNLIF----ISALHPSSCTPDIL 283
              +  +  + +L  L       +    P   Y  +L +L      ++A+         +
Sbjct: 190 AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPY-----LAV 244

Query: 284 SRLPTVQTLRISG-DLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVLSEYQFP--PSL 340
             L  ++ L +S   +S         L EL +L+ ++L  G +L+  V+  Y F     L
Sbjct: 245 RHLVYLRFLNLSYNPISTIEGS---MLHELLRLQEIQL-VGGQLA--VVEPYAFRGLNYL 298

Query: 341 IQLSLSNTELMEDPMPMLERLPRLQVMKLKRN 372
             L++S  +L      +   +  L+ + L  N
Sbjct: 299 RVLNVSGNQLTTLEESVFHSVGNLETLILDSN 330

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 40.6 bits (95), Expect = 7e-04
 Identities = 20/219 (9%), Positives = 56/219 (25%), Gaps = 5/219 (2%)

Query: 158 HLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTL 217
            +  ++      +   L  LN     +      +     LK L L+   L  +     + 
Sbjct: 155 EIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNKLAFMGPEFQSA 213

Query: 218 LNLETLEMPAGYIDHSPEGIWMMQKLMHLNFDS--ITLPAPPKNYSSSLKNLIFISALHP 275
             +  + +    +    + +   Q L H +             ++ S  + +  ++    
Sbjct: 214 AGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLR-DFFSKNQRVQTVAKQTV 272

Query: 276 SSCTPDILSRLPTVQTLRISG-DLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVLSEY 334
              T                        +  +  L  L + E   L      +  +  E 
Sbjct: 273 KKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECER 332

Query: 335 QFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNS 373
           +      ++     +       +  R      ++ K+ +
Sbjct: 333 ENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKA 371

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 40.4 bits (95), Expect = 7e-04
 Identities = 45/211 (21%), Positives = 79/211 (37%), Gaps = 17/211 (8%)

Query: 174 LRVLNWGSAVLDQFPPG-LENLFLLKYLQL---NIPTLKCLPLLICTLLNLETLEMPAGY 229
              L   S  L   P G  + L  L  L L    +    C         +L+ L++    
Sbjct: 30  ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89

Query: 230 IDHSPEGIWMMQKLMHLNFDSITLPA-PPKNYSSSLKNLIF--ISALHPSSCTPDILSRL 286
           +         +++L HL+F    L      +   SL+NLI+  IS  H       I + L
Sbjct: 90  VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 149

Query: 287 PTVQTLRISG--DLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVLSEYQFP--PSLIQ 342
            +++ L+++G     ++   +   L  L  L+    ++  +L +  LS   F    SL  
Sbjct: 150 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLD----LSQCQLEQ--LSPTAFNSLSSLQV 203

Query: 343 LSLSNTELMEDPMPMLERLPRLQVMKLKRNS 373
           L++S+           + L  LQV+    N 
Sbjct: 204 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 234

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	394
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.93
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.93
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.91
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.9
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.89
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.89
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.89
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.89
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.89
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.89
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.89
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.89
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.88
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.88
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.88
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.88
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.88
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.88
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.88
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.88
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.88
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.87
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.87
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.87
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.87
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.87
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.87
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.87
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.86
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.86
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.86
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.86
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.86
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.86
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.86
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.86
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.85
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.85
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.85
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.85
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.85
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.84
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.84
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.84
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.84
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.84
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.84
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.83
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.83
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.83
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.83
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.83
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.83
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.82
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.82
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.82
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.81
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.81
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.8
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.8
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.8
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.79
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.79
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.79
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.79
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.79
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.78
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.78
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.77
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.77
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.77
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.77
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.77
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.77
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.77
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.76
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.74
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.74
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.74
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.73
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.73
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.72
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.72
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.72
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.71
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.7
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.67
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.67
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.66
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.66
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.65
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.64
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.64
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.63
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.63
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.62
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.61
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.61
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.61
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.6
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.6
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.59
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.59
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.56
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.55
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	99.55
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.55
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.55
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.53
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.53
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.52
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.52
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.52
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.52
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.5
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.5
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.5
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.5
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.48
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.46
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.45
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.44
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.42
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.41
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.4
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.37
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.36
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.35
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.34
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.31
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.27
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.25
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.22
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.22
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.15
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.14
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.14
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.12
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	99.1
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.01
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.99
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.98
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.92
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.91
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	98.83
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.8
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.65
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.64
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.53
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.44
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.23
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.0
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.96
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.85
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.82
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.81
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.71
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.7
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.58
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.22
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.16
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.89
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.13
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.34
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	94.32
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	93.98
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	91.85

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.93  E-value=4.1e-26  Score=212.01  Aligned_cols=225  Identities=17%  Similarity=0.144  Sum_probs=197.2

Q ss_pred             CCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCcccccCcccccEEecCCCCCccccccccCCCCC
Q 037494          141 QSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNL  220 (394)
Q Consensus       141 ~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~L  220 (394)
                      ....+++.|.+.++...     .++..+.++++|++|++++|.+..+|..++.+++|++|++++|.+..+|..++++++|
T Consensus        78 ~~~~~l~~L~L~~n~l~-----~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L  152 (328)
T 4fcg_A           78 ATQPGRVALELRSVPLP-----QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRL  152 (328)
T ss_dssp             HTSTTCCEEEEESSCCS-----SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTC
T ss_pred             ccccceeEEEccCCCch-----hcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCC
Confidence            34578889999888776     4443337799999999999999999999999999999999999999999999999999


Q ss_pred             cEEEcc-cCCccccchhhcc---------CccCcEEEeeCCCCCCCCCCCCCCCCcCceeCccccC-CCcchhcCCCCCC
Q 037494          221 ETLEMP-AGYIDHSPEGIWM---------MQKLMHLNFDSITLPAPPKNYSSSLKNLIFISALHPS-SCTPDILSRLPTV  289 (394)
Q Consensus       221 ~~L~l~-~~~l~~lp~~i~~---------l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~-~~~~~~l~~l~~L  289 (394)
                      ++|+++ |..+..+|..++.         +++|++|+++ +|.+..+|..++.+++|++|++.++. ...+..++.+++|
T Consensus       153 ~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~-~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L  231 (328)
T 4fcg_A          153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLE-WTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKL  231 (328)
T ss_dssp             CEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEE-EECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTC
T ss_pred             CEEECCCCCCccccChhHhhccchhhhccCCCCCEEECc-CCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCC
Confidence            999999 8678888887665         9999999999 99988999999999999999999988 6677789999999


Q ss_pred             CeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCccCC-CCCCCCCCceEEEEecccCCCCCcccccCCCCCCeEE
Q 037494          290 QTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMK  368 (394)
Q Consensus       290 ~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~  368 (394)
                      +.|++++|.  ..+.+|..++.+++|+.|++++|+.+..+ | ++.. +++|+.|+|++|++....++.++++++|+.+.
T Consensus       232 ~~L~Ls~n~--~~~~~p~~~~~l~~L~~L~L~~n~~~~~~-p~~~~~-l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~  307 (328)
T 4fcg_A          232 EELDLRGCT--ALRNYPPIFGGRAPLKRLILKDCSNLLTL-PLDIHR-LTQLEKLDLRGCVNLSRLPSLIAQLPANCIIL  307 (328)
T ss_dssp             CEEECTTCT--TCCBCCCCTTCCCCCCEEECTTCTTCCBC-CTTGGG-CTTCCEEECTTCTTCCCCCGGGGGSCTTCEEE
T ss_pred             CEEECcCCc--chhhhHHHhcCCCCCCEEECCCCCchhhc-chhhhc-CCCCCEEeCCCCCchhhccHHHhhccCceEEe
Confidence            999999987  77788888999999999999997778888 8 8888 99999999999998888888899999999999


Q ss_pred             Eeccccc
Q 037494          369 LKRNSYF  375 (394)
Q Consensus       369 l~~n~~~  375 (394)
                      +..+.+.
T Consensus       308 l~~~~~~  314 (328)
T 4fcg_A          308 VPPHLQA  314 (328)
T ss_dssp             CCGGGSC
T ss_pred             CCHHHHH
Confidence            9765443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.93  E-value=3e-25  Score=206.21  Aligned_cols=202  Identities=21%  Similarity=0.195  Sum_probs=183.1

Q ss_pred             cCCceeEEEcCCCCCCCCcccccCcccccEEecCCCCCccccccccCCCCCcEEEcc-cCCccccchhhccCccCcEEEe
Q 037494          170 NFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLNF  248 (394)
Q Consensus       170 ~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l  248 (394)
                      ....+++|+++++.+..+|+.++++++|++|++++|.+..+|..++++++|++|+++ | .+..+|..++.+++|++|++
T Consensus        79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L  157 (328)
T 4fcg_A           79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLRELSI  157 (328)
T ss_dssp             TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEEEE
T ss_pred             cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCC-ccccCcHHHhcCcCCCEEEC
Confidence            468999999999999999999999999999999999999999999999999999999 8 88899999999999999999


Q ss_pred             eCCCC-CCCCCCCCCC---------CCcCceeCccccC-CCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcE
Q 037494          249 DSITL-PAPPKNYSSS---------LKNLIFISALHPS-SCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLEC  317 (394)
Q Consensus       249 ~~~~~-~~~~p~~l~~---------l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~  317 (394)
                      + +|. ...+|..++.         +++|++|++.++. ...+..++.+++|+.|++++|.   ...+|..+..+++|+.
T Consensus       158 ~-~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~---l~~l~~~l~~l~~L~~  233 (328)
T 4fcg_A          158 R-ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP---LSALGPAIHHLPKLEE  233 (328)
T ss_dssp             E-EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSC---CCCCCGGGGGCTTCCE
T ss_pred             C-CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCC---CCcCchhhccCCCCCE
Confidence            9 876 7888887765         9999999999998 7777889999999999999995   4467778999999999


Q ss_pred             EEecCCCCCCccCC-CCCCCCCCceEEEEecccCCCCCcccccCCCCCCeEEEecccccCce
Q 037494          318 LKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFGRK  378 (394)
Q Consensus       318 L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~  378 (394)
                      |++++|+....+ | ++.. +++|+.|+|++|++....+..++.+++|++|++++|.+.+..
T Consensus       234 L~Ls~n~~~~~~-p~~~~~-l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~i  293 (328)
T 4fcg_A          234 LDLRGCTALRNY-PPIFGG-RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL  293 (328)
T ss_dssp             EECTTCTTCCBC-CCCTTC-CCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCC
T ss_pred             EECcCCcchhhh-HHHhcC-CCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhc
Confidence            999997777777 8 8988 999999999999887777778999999999999998877654

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.91  E-value=8.3e-25  Score=201.95  Aligned_cols=238  Identities=16%  Similarity=0.200  Sum_probs=149.4

Q ss_pred             CCccEEEEecCCCccchhcchhHHhccCCceeEEEcCC-CCCC-CCcccccCcccccEEecCCCCCc-cccccccCCCCC
Q 037494          144 MYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGS-AVLD-QFPPGLENLFLLKYLQLNIPTLK-CLPLLICTLLNL  220 (394)
Q Consensus       144 ~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~-~~~~-~lp~~i~~l~~L~~L~l~~~~l~-~lp~~l~~l~~L  220 (394)
                      .+++.|.+.++....  ...++..+.++++|++|++++ +.+. .+|..++++++|++|++++|.+. .+|..++++++|
T Consensus        50 ~~l~~L~L~~~~l~~--~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L  127 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPK--PYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL  127 (313)
T ss_dssp             CCEEEEEEECCCCSS--CEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred             ceEEEEECCCCCccC--CcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCC
Confidence            456666666665531  002233336777777777774 5554 56666777777777777777766 566667777777


Q ss_pred             cEEEcc-cCCcc-ccchhhccCccCcEEEeeCCCCCC-CCCCCCCCCC-cCceeCccccC--CCcchhcCCCCCCCeEEE
Q 037494          221 ETLEMP-AGYID-HSPEGIWMMQKLMHLNFDSITLPA-PPKNYSSSLK-NLIFISALHPS--SCTPDILSRLPTVQTLRI  294 (394)
Q Consensus       221 ~~L~l~-~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~-~~p~~l~~l~-~L~~L~~~~~~--~~~~~~l~~l~~L~~L~l  294 (394)
                      ++|+++ | .+. .+|..++.+++|++|+++ +|.+. .+|..++.++ +|+.|++.++.  ...+..++.++ |+.|++
T Consensus       128 ~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~L~-~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~L  204 (313)
T 1ogq_A          128 VTLDFSYN-ALSGTLPPSISSLPNLVGITFD-GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDL  204 (313)
T ss_dssp             CEEECCSS-EEESCCCGGGGGCTTCCEEECC-SSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEEC
T ss_pred             CEEeCCCC-ccCCcCChHHhcCCCCCeEECc-CCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEEC
Confidence            777777 6 554 566667777777777777 66644 5666666666 67777776666  35556666665 777777


Q ss_pred             eecCCccccchhhhhcCCCCCcEEEecCCCCCCccCCCCCCCCCCceEEEEecccCCCCCcccccCCCCCCeEEEecccc
Q 037494          295 SGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSY  374 (394)
Q Consensus       295 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~~  374 (394)
                      ++|.  .....+..+..+++|+.|++++ +.+....|.+.. +++|++|++++|++....+..++.+++|++|++++|.+
T Consensus       205 s~N~--l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~-l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  280 (313)
T 1ogq_A          205 SRNM--LEGDASVLFGSDKNTQKIHLAK-NSLAFDLGKVGL-SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL  280 (313)
T ss_dssp             CSSE--EEECCGGGCCTTSCCSEEECCS-SEECCBGGGCCC-CTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEE
T ss_pred             cCCc--ccCcCCHHHhcCCCCCEEECCC-CceeeecCcccc-cCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcc
Confidence            7765  4445566666777777777766 444433024455 67777777777776555556667777777777777766


Q ss_pred             cCceeEEeCCCCCcCCccc
Q 037494          375 FGRKLACVGSGGFPELQVL  393 (394)
Q Consensus       375 ~~~~~~~~~~~~fp~L~~L  393 (394)
                      ++....   .+.+++|+.|
T Consensus       281 ~~~ip~---~~~l~~L~~l  296 (313)
T 1ogq_A          281 CGEIPQ---GGNLQRFDVS  296 (313)
T ss_dssp             EEECCC---STTGGGSCGG
T ss_pred             cccCCC---CccccccChH
Confidence            543311   1345555544

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.90  E-value=2.6e-23  Score=197.86  Aligned_cols=253  Identities=18%  Similarity=0.174  Sum_probs=191.8

Q ss_pred             CCceEEEEEEeCCcchhhcc--CCCCCccEEEEecCCCccchhcch-hHHhccCCceeEEEcCCCCCCCCc-ccccCccc
Q 037494          121 LATVKRCFILEDLIEFISLE--QSDMYLQSFLNHSSESDHLALIDC-ENFCENFKYLRVLNWGSAVLDQFP-PGLENLFL  196 (394)
Q Consensus       121 ~~~~r~L~l~~~~~~~~~~~--~~~~~lr~L~l~~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~  196 (394)
                      ..+++++.+..+....++..  ..+++|+.|.+.++...     .+ +..|..+++|++|++++|.+..++ ..++.+++
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  118 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-----EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL  118 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC-----EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             cCCceEEEecCCchhhCChhHhcccccCcEEECCCCccc-----ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCC
Confidence            46788888886666666654  56888999999888775     23 334488899999999999888665 55788899


Q ss_pred             ccEEecCCCCCccccccc-cCCCCCcEEEcc-cCCccccch-hhccCccCcEEEeeCCCCCCCCCCCCCCCC--------
Q 037494          197 LKYLQLNIPTLKCLPLLI-CTLLNLETLEMP-AGYIDHSPE-GIWMMQKLMHLNFDSITLPAPPKNYSSSLK--------  265 (394)
Q Consensus       197 L~~L~l~~~~l~~lp~~l-~~l~~L~~L~l~-~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~--------  265 (394)
                      |++|++++|.++.+|..+ +++++|++|+++ | .+..+++ .++.+++|++|+++ +|.+..++  ++.++        
T Consensus       119 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~--~~~l~~L~~L~l~  194 (390)
T 3o6n_A          119 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLS-SNRLTHVD--LSLIPSLFHANVS  194 (390)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTSSCTTCCEEECC-SSCCSBCC--GGGCTTCSEEECC
T ss_pred             CCEEECCCCccCcCCHHHhcCCCCCcEEECCCC-ccCccChhhccCCCCCCEEECC-CCcCCccc--cccccccceeecc
Confidence            999999999888888774 788899999999 7 7777654 57888889999888 87755443  12222        


Q ss_pred             --------------------------------cCceeCccccCCCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCC
Q 037494          266 --------------------------------NLIFISALHPSSCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELH  313 (394)
Q Consensus       266 --------------------------------~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~  313 (394)
                                                      +|+.|++.++.......++.+++|+.|++++|.  .....+..+..++
T Consensus       195 ~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~--l~~~~~~~~~~l~  272 (390)
T 3o6n_A          195 YNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNE--LEKIMYHPFVKMQ  272 (390)
T ss_dssp             SSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC--CCEEESGGGTTCS
T ss_pred             cccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCc--CCCcChhHccccc
Confidence                                            345555555552334567778889999998886  5555677888899


Q ss_pred             CCcEEEecCCCCCCccCC-CCCCCCCCceEEEEecccCCCCCcccccCCCCCCeEEEecccccCceeEEeCCCCCcCCcc
Q 037494          314 KLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFGRKLACVGSGGFPELQV  392 (394)
Q Consensus       314 ~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~fp~L~~  392 (394)
                      +|+.|++++ +.+..+ | .+.. +++|+.|++++|++.. .++.++.+++|+.|++++|.+....     ...+++|+.
T Consensus       273 ~L~~L~L~~-n~l~~~-~~~~~~-l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~N~i~~~~-----~~~~~~L~~  343 (390)
T 3o6n_A          273 RLERLYISN-NRLVAL-NLYGQP-IPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTLK-----LSTHHTLKN  343 (390)
T ss_dssp             SCCEEECCS-SCCCEE-ECSSSC-CTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCCC-----CCTTCCCSE
T ss_pred             cCCEEECCC-CcCccc-CcccCC-CCCCCEEECCCCccee-cCccccccCcCCEEECCCCccceeC-----chhhccCCE
Confidence            999999988 678877 7 6777 8999999999999864 3455778899999999999887654     457888877


Q ss_pred             c
Q 037494          393 L  393 (394)
Q Consensus       393 L  393 (394)
                      |
T Consensus       344 L  344 (390)
T 3o6n_A          344 L  344 (390)
T ss_dssp             E
T ss_pred             E
Confidence            6

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.89  E-value=6.4e-23  Score=199.04  Aligned_cols=130  Identities=17%  Similarity=0.081  Sum_probs=96.2

Q ss_pred             CCceEEEEEEeCCcchhhc--cCCCCCccEEEEecCCCccchhcch-hHHhccCCceeEEEcCCCCCCCC-cccccCccc
Q 037494          121 LATVKRCFILEDLIEFISL--EQSDMYLQSFLNHSSESDHLALIDC-ENFCENFKYLRVLNWGSAVLDQF-PPGLENLFL  196 (394)
Q Consensus       121 ~~~~r~L~l~~~~~~~~~~--~~~~~~lr~L~l~~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~  196 (394)
                      +..+++|.+..+....++.  ...+++|+.|.+.++....    .+ +..|.++++|++|++++|.+..+ |..++++++
T Consensus        29 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~----~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  104 (455)
T 3v47_A           29 PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGL----VIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLAN  104 (455)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTC----EECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTT
T ss_pred             CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccc----eECcccccccccCCEEeCCCCccCccChhhccCccc
Confidence            4678888888666665533  2678888888888886642    22 34448888888888888888755 677888888


Q ss_pred             ccEEecCCCCCcc-cccc--ccCCCCCcEEEcc-cCCcccc-chh-hccCccCcEEEeeCCCCCCC
Q 037494          197 LKYLQLNIPTLKC-LPLL--ICTLLNLETLEMP-AGYIDHS-PEG-IWMMQKLMHLNFDSITLPAP  256 (394)
Q Consensus       197 L~~L~l~~~~l~~-lp~~--l~~l~~L~~L~l~-~~~l~~l-p~~-i~~l~~L~~L~l~~~~~~~~  256 (394)
                      |++|++++|.+.. .|..  ++.+++|++|+++ | .+..+ |.. ++.+++|++|+++ +|.+..
T Consensus       105 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~-~n~l~~  168 (455)
T 3v47_A          105 LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQPASFFLNMRRFHVLDLT-FNKVKS  168 (455)
T ss_dssp             CCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSS-BCCSCCCCGGGGGCTTCCEEECT-TCCBSC
T ss_pred             CCEEeCCCCCCCccccCcccccCcccCCEEECCCC-ccCccCcccccCCCCcccEEeCC-CCcccc
Confidence            8888888888874 4444  7788888888888 7 66666 444 7788888888888 776443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.89  E-value=1.2e-22  Score=190.10  Aligned_cols=253  Identities=16%  Similarity=0.164  Sum_probs=152.6

Q ss_pred             CCceEEEEEEeCCcchhhccCCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCcccccCcccccEE
Q 037494          121 LATVKRCFILEDLIEFISLEQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYL  200 (394)
Q Consensus       121 ~~~~r~L~l~~~~~~~~~~~~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L  200 (394)
                      ...+++|.+..+....++....+++|++|.+.++...     .++.+ ..+++|++|++++|.+..++. +..+++|++|
T Consensus        65 ~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~-----~~~~~-~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L  137 (347)
T 4fmz_A           65 LTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKIT-----DISAL-QNLTNLRELYLNEDNISDISP-LANLTKMYSL  137 (347)
T ss_dssp             CTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCC-----CCGGG-TTCTTCSEEECTTSCCCCCGG-GTTCTTCCEE
T ss_pred             cCCccEEEccCCccccchhhhcCCcCCEEEccCCccc-----CchHH-cCCCcCCEEECcCCcccCchh-hccCCceeEE
Confidence            4567777777555555555566777777777776654     23444 677777777777777666655 6666666666


Q ss_pred             ecCCCCCccccccccCCCCCcEEEcc-cCCccccchhhccCccCcEEEeeCCCCCCCCCC--------------------
Q 037494          201 QLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITLPAPPKN--------------------  259 (394)
Q Consensus       201 ~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~--------------------  259 (394)
                      ++++|.....++.++.+++|++|+++ | .+..++. +..+++|++|+++ +|....++.                    
T Consensus       138 ~l~~n~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~-~~~l~~L~~L~l~-~n~l~~~~~~~~l~~L~~L~l~~n~l~~~  214 (347)
T 4fmz_A          138 NLGANHNLSDLSPLSNMTGLNYLTVTES-KVKDVTP-IANLTDLYSLSLN-YNQIEDISPLASLTSLHYFTAYVNQITDI  214 (347)
T ss_dssp             ECTTCTTCCCCGGGTTCTTCCEEECCSS-CCCCCGG-GGGCTTCSEEECT-TSCCCCCGGGGGCTTCCEEECCSSCCCCC
T ss_pred             ECCCCCCcccccchhhCCCCcEEEecCC-CcCCchh-hccCCCCCEEEcc-CCcccccccccCCCccceeecccCCCCCC
Confidence            66666333223345556666666665 5 4444443 5555555555555 555444332                    


Q ss_pred             -CCCCCCcCceeCccccCCCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCccCCCCCCCCC
Q 037494          260 -YSSSLKNLIFISALHPSSCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVLSEYQFPP  338 (394)
Q Consensus       260 -~l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p~~~~~l~  338 (394)
                       .++.+++|++|++.++.......+..+++|+.|++++|.  .. .+ ..+..+++|+.|++++ +.+..+ |.+.. ++
T Consensus       215 ~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~--l~-~~-~~~~~l~~L~~L~l~~-n~l~~~-~~~~~-l~  287 (347)
T 4fmz_A          215 TPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQ--IS-DI-NAVKDLTKLKMLNVGS-NQISDI-SVLNN-LS  287 (347)
T ss_dssp             GGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC--CC-CC-GGGTTCTTCCEEECCS-SCCCCC-GGGGG-CT
T ss_pred             chhhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCc--cC-CC-hhHhcCCCcCEEEccC-CccCCC-hhhcC-CC
Confidence             144455555555555551112225566666666666654  11 12 2455666666666666 345554 44555 78


Q ss_pred             CceEEEEecccCCCCCcccccCCCCCCeEEEecccccCceeEEeCCCCCcCCcccC
Q 037494          339 SLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFGRKLACVGSGGFPELQVLT  394 (394)
Q Consensus       339 ~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~fp~L~~L~  394 (394)
                      +|+.|++++|++....+..++.+++|+.|++++|.+.+...    ...+++|+.|+
T Consensus       288 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~----~~~l~~L~~L~  339 (347)
T 4fmz_A          288 QLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP----LASLSKMDSAD  339 (347)
T ss_dssp             TCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG----GGGCTTCSEES
T ss_pred             CCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC----hhhhhccceee
Confidence            88888888888776666777888888888888888776543    24577777764

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.89  E-value=1.1e-22  Score=190.44  Aligned_cols=237  Identities=16%  Similarity=0.180  Sum_probs=172.5

Q ss_pred             CCceEEEEEEeCCcchhhccCCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCcccccCcccccEE
Q 037494          121 LATVKRCFILEDLIEFISLEQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYL  200 (394)
Q Consensus       121 ~~~~r~L~l~~~~~~~~~~~~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L  200 (394)
                      ...++++.+.++....++....+++|+.|.+.++...     .++.+ ..+++|++|++++|.+..++ .+..+++|++|
T Consensus        43 l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~-----~~~~~-~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L  115 (347)
T 4fmz_A           43 LESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQIT-----DISPL-SNLVKLTNLYIGTNKITDIS-ALQNLTNLREL  115 (347)
T ss_dssp             HTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCC-----CCGGG-TTCTTCCEEECCSSCCCCCG-GGTTCTTCSEE
T ss_pred             cccccEEEEeCCccccchhhhhcCCccEEEccCCccc-----cchhh-hcCCcCCEEEccCCcccCch-HHcCCCcCCEE
Confidence            5678889988777777766678999999999999876     34444 99999999999999999876 59999999999


Q ss_pred             ecCCCCCccccccccCCCCCcEEEcc-cCCccccchhhccCccCcEEEeeCCCCCCCCCCCCCCCCcCceeCccccCCCc
Q 037494          201 QLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITLPAPPKNYSSSLKNLIFISALHPSSCT  279 (394)
Q Consensus       201 ~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~~  279 (394)
                      ++++|.+..+|. +..+++|++|+++ |..+..+ ..+..+++|++|+++ +|....++. ++.+++|+.|++.++....
T Consensus       116 ~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~-~~~~~~~~~-~~~l~~L~~L~l~~n~l~~  191 (347)
T 4fmz_A          116 YLNEDNISDISP-LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVT-ESKVKDVTP-IANLTDLYSLSLNYNQIED  191 (347)
T ss_dssp             ECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECC-SSCCCCCGG-GGGCTTCSEEECTTSCCCC
T ss_pred             ECcCCcccCchh-hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEec-CCCcCCchh-hccCCCCCEEEccCCcccc
Confidence            999999999886 8999999999999 8455554 458999999999999 998777665 8889999999999887222


Q ss_pred             chhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCC---------------------CCCCccCCCCCCCCC
Q 037494          280 PDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNG---------------------SKLSRMVLSEYQFPP  338 (394)
Q Consensus       280 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~---------------------~~L~~L~p~~~~~l~  338 (394)
                      ...+..+++|+.|+++++.  ... .+. +..+++|+.|+++++                     +.+..+ +.+.. ++
T Consensus       192 ~~~~~~l~~L~~L~l~~n~--l~~-~~~-~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~-l~  265 (347)
T 4fmz_A          192 ISPLASLTSLHYFTAYVNQ--ITD-ITP-VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDI-NAVKD-LT  265 (347)
T ss_dssp             CGGGGGCTTCCEEECCSSC--CCC-CGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC-GGGTT-CT
T ss_pred             cccccCCCccceeecccCC--CCC-Cch-hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCC-hhHhc-CC
Confidence            3336666677777776664  221 111 455566666666552                     222222 23344 56


Q ss_pred             CceEEEEecccCCCCCcccccCCCCCCeEEEecccccC
Q 037494          339 SLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFG  376 (394)
Q Consensus       339 ~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~  376 (394)
                      +|+.|++++|++..  .+.+..+++|+.|++++|.+.+
T Consensus       266 ~L~~L~l~~n~l~~--~~~~~~l~~L~~L~L~~n~l~~  301 (347)
T 4fmz_A          266 KLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGN  301 (347)
T ss_dssp             TCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCG
T ss_pred             CcCEEEccCCccCC--ChhhcCCCCCCEEECcCCcCCC
Confidence            66666666666533  2445666666666666665543

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.89  E-value=1.1e-23  Score=194.48  Aligned_cols=238  Identities=16%  Similarity=0.111  Sum_probs=201.0

Q ss_pred             CceEEEEEEeCCcch---hhcc-CCCCCccEEEEec-CCCccchhcchhHHhccCCceeEEEcCCCCCC-CCcccccCcc
Q 037494          122 ATVKRCFILEDLIEF---ISLE-QSDMYLQSFLNHS-SESDHLALIDCENFCENFKYLRVLNWGSAVLD-QFPPGLENLF  195 (394)
Q Consensus       122 ~~~r~L~l~~~~~~~---~~~~-~~~~~lr~L~l~~-~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~-~lp~~i~~l~  195 (394)
                      .++++|.+..+....   ++.. ..+++|++|.+.+ +....    .++..|.++++|++|++++|.+. .+|..++.++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~  125 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG----PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK  125 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEES----CCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCT
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccc----cCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCC
Confidence            579999999666653   4443 7899999999995 65542    34544599999999999999998 8899999999


Q ss_pred             cccEEecCCCCCc-cccccccCCCCCcEEEcc-cCCcc-ccchhhccCc-cCcEEEeeCCCCCC-CCCCCCCCCCcCcee
Q 037494          196 LLKYLQLNIPTLK-CLPLLICTLLNLETLEMP-AGYID-HSPEGIWMMQ-KLMHLNFDSITLPA-PPKNYSSSLKNLIFI  270 (394)
Q Consensus       196 ~L~~L~l~~~~l~-~lp~~l~~l~~L~~L~l~-~~~l~-~lp~~i~~l~-~L~~L~l~~~~~~~-~~p~~l~~l~~L~~L  270 (394)
                      +|++|++++|.+. .+|..++.+++|++|+++ | .+. .+|..++.++ +|++|+++ +|.+. .+|..++.++ |+.|
T Consensus       126 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~~L~~L~L~-~N~l~~~~~~~~~~l~-L~~L  202 (313)
T 1ogq_A          126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN-RISGAIPDSYGSFSKLFTSMTIS-RNRLTGKIPPTFANLN-LAFV  202 (313)
T ss_dssp             TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS-CCEEECCGGGGCCCTTCCEEECC-SSEEEEECCGGGGGCC-CSEE
T ss_pred             CCCEEeCCCCccCCcCChHHhcCCCCCeEECcCC-cccCcCCHHHhhhhhcCcEEECc-CCeeeccCChHHhCCc-ccEE
Confidence            9999999999998 789999999999999999 8 776 8899999998 99999999 98844 7788888887 9999


Q ss_pred             CccccC--CCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCC-ccCC-CCCCCCCCceEEEEe
Q 037494          271 SALHPS--SCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLS-RMVL-SEYQFPPSLIQLSLS  346 (394)
Q Consensus       271 ~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~-~L~p-~~~~~l~~L~~L~L~  346 (394)
                      ++.++.  ...+..++.+++|+.|++++|.  .....+ .+..+++|+.|++++ +.+. .+ | ++.. +++|+.|+++
T Consensus       203 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~--l~~~~~-~~~~l~~L~~L~Ls~-N~l~~~~-p~~l~~-l~~L~~L~Ls  276 (313)
T 1ogq_A          203 DLSRNMLEGDASVLFGSDKNTQKIHLAKNS--LAFDLG-KVGLSKNLNGLDLRN-NRIYGTL-PQGLTQ-LKFLHSLNVS  276 (313)
T ss_dssp             ECCSSEEEECCGGGCCTTSCCSEEECCSSE--ECCBGG-GCCCCTTCCEEECCS-SCCEECC-CGGGGG-CTTCCEEECC
T ss_pred             ECcCCcccCcCCHHHhcCCCCCEEECCCCc--eeeecC-cccccCCCCEEECcC-CcccCcC-ChHHhc-CcCCCEEECc
Confidence            999988  5677889999999999999996  443444 478899999999998 5666 55 8 8888 9999999999


Q ss_pred             cccCCCCCcccccCCCCCCeEEEeccc
Q 037494          347 NTELMEDPMPMLERLPRLQVMKLKRNS  373 (394)
Q Consensus       347 ~~~l~~~~~~~l~~l~~L~~L~l~~n~  373 (394)
                      +|++.... |..+.+++|+.|++++|.
T Consensus       277 ~N~l~~~i-p~~~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          277 FNNLCGEI-PQGGNLQRFDVSAYANNK  302 (313)
T ss_dssp             SSEEEEEC-CCSTTGGGSCGGGTCSSS
T ss_pred             CCcccccC-CCCccccccChHHhcCCC
Confidence            99986544 445889999999998886

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.89  E-value=3.1e-22  Score=186.10  Aligned_cols=241  Identities=13%  Similarity=0.017  Sum_probs=187.5

Q ss_pred             CCceEEEEEEeCCcchhhc--cCCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCcccccCccccc
Q 037494          121 LATVKRCFILEDLIEFISL--EQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLK  198 (394)
Q Consensus       121 ~~~~r~L~l~~~~~~~~~~--~~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~  198 (394)
                      +..++.|.+..+....++.  ...+++|++|.+.++....    ..+..|..+++|++|++++|.++.+|..+.  ++|+
T Consensus        51 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~  124 (330)
T 1xku_A           51 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK----ISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQ  124 (330)
T ss_dssp             CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCC----BCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCC
T ss_pred             CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCe----eCHHHhcCCCCCCEEECCCCcCCccChhhc--cccc
Confidence            4567788887666666654  2678888888888887752    114444888888888888888888887665  6888


Q ss_pred             EEecCCCCCccccc-cccCCCCCcEEEcc-cCCcc---ccchhhccCccCcEEEeeCCCCCCCCCCCCCCCCcCceeCcc
Q 037494          199 YLQLNIPTLKCLPL-LICTLLNLETLEMP-AGYID---HSPEGIWMMQKLMHLNFDSITLPAPPKNYSSSLKNLIFISAL  273 (394)
Q Consensus       199 ~L~l~~~~l~~lp~-~l~~l~~L~~L~l~-~~~l~---~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~  273 (394)
                      +|++++|.+..++. .++++++|++|+++ | .+.   ..|..+..+++|++|+++ +|.+..+|..+.  ++|++|++.
T Consensus       125 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~-~n~l~~l~~~~~--~~L~~L~l~  200 (330)
T 1xku_A          125 ELRVHENEITKVRKSVFNGLNQMIVVELGTN-PLKSSGIENGAFQGMKKLSYIRIA-DTNITTIPQGLP--PSLTELHLD  200 (330)
T ss_dssp             EEECCSSCCCBBCHHHHTTCTTCCEEECCSS-CCCGGGBCTTGGGGCTTCCEEECC-SSCCCSCCSSCC--TTCSEEECT
T ss_pred             EEECCCCcccccCHhHhcCCccccEEECCCC-cCCccCcChhhccCCCCcCEEECC-CCccccCCcccc--ccCCEEECC
Confidence            88888888887764 47888999999998 7 554   345678889999999999 888888887654  789999998


Q ss_pred             ccC--CCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCccCC-CCCCCCCCceEEEEecccC
Q 037494          274 HPS--SCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTEL  350 (394)
Q Consensus       274 ~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l  350 (394)
                      ++.  ...+..++.+++|+.|++++|.  .....+..+..+++|+.|++++ +.+..+ | ++.. +++|+.|++++|++
T Consensus       201 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~L~~-N~l~~l-p~~l~~-l~~L~~L~l~~N~i  275 (330)
T 1xku_A          201 GNKITKVDAASLKGLNNLAKLGLSFNS--ISAVDNGSLANTPHLRELHLNN-NKLVKV-PGGLAD-HKYIQVVYLHNNNI  275 (330)
T ss_dssp             TSCCCEECTGGGTTCTTCCEEECCSSC--CCEECTTTGGGSTTCCEEECCS-SCCSSC-CTTTTT-CSSCCEEECCSSCC
T ss_pred             CCcCCccCHHHhcCCCCCCEEECCCCc--CceeChhhccCCCCCCEEECCC-CcCccC-Chhhcc-CCCcCEEECCCCcC
Confidence            887  3345778899999999999986  4444455788889999999998 678888 8 8888 89999999999998


Q ss_pred             CCCCcccccC------CCCCCeEEEecccccC
Q 037494          351 MEDPMPMLER------LPRLQVMKLKRNSYFG  376 (394)
Q Consensus       351 ~~~~~~~l~~------l~~L~~L~l~~n~~~~  376 (394)
                      +..+...+..      .+.|+.|++++|.+..
T Consensus       276 ~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~  307 (330)
T 1xku_A          276 SAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY  307 (330)
T ss_dssp             CCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred             CccChhhcCCcccccccccccceEeecCcccc
Confidence            7766655543      4788999998887654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.89  E-value=5e-23  Score=189.32  Aligned_cols=232  Identities=17%  Similarity=0.162  Sum_probs=190.8

Q ss_pred             CcchhhccCCCCCccEEEEecCCCccchhcch-hHHhccCCceeEEEcCCCCCCCC---cccccCcccccEEecCCCCCc
Q 037494          133 LIEFISLEQSDMYLQSFLNHSSESDHLALIDC-ENFCENFKYLRVLNWGSAVLDQF---PPGLENLFLLKYLQLNIPTLK  208 (394)
Q Consensus       133 ~~~~~~~~~~~~~lr~L~l~~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~l---p~~i~~l~~L~~L~l~~~~l~  208 (394)
                      ....+|.. -.++++.|.+.++...     .+ +.+|.++++|++|++++|.+..+   |..+..+++|++|++++|.+.
T Consensus        18 ~l~~ip~~-~~~~l~~L~L~~n~l~-----~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~   91 (306)
T 2z66_A           18 GLTSVPTG-IPSSATRLELESNKLQ-----SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI   91 (306)
T ss_dssp             CCSSCCSC-CCTTCCEEECCSSCCC-----CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE
T ss_pred             CcccCCCC-CCCCCCEEECCCCccC-----ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc
Confidence            33444443 3468999999988776     34 44458999999999999998754   567778999999999999999


Q ss_pred             cccccccCCCCCcEEEcc-cCCccccch--hhccCccCcEEEeeCCCCCCC-CCCCCCCCCcCceeCccccC-C--Ccch
Q 037494          209 CLPLLICTLLNLETLEMP-AGYIDHSPE--GIWMMQKLMHLNFDSITLPAP-PKNYSSSLKNLIFISALHPS-S--CTPD  281 (394)
Q Consensus       209 ~lp~~l~~l~~L~~L~l~-~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~-~p~~l~~l~~L~~L~~~~~~-~--~~~~  281 (394)
                      .+|..+..+++|++|+++ | .+..++.  .+..+++|++|+++ +|.... .|..++.+++|++|++.++. .  ..+.
T Consensus        92 ~l~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  169 (306)
T 2z66_A           92 TMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDIS-HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD  169 (306)
T ss_dssp             EEEEEEETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECT-TSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECS
T ss_pred             cChhhcCCCCCCCEEECCCC-cccccccchhhhhccCCCEEECC-CCcCCccchhhcccCcCCCEEECCCCccccccchh
Confidence            999889999999999999 8 8888774  68899999999999 888544 45568899999999999887 2  3677


Q ss_pred             hcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCccCC-CCCCCCCCceEEEEecccCCCCCcccccC
Q 037494          282 ILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLER  360 (394)
Q Consensus       282 ~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~  360 (394)
                      .+..+++|+.|++++|.  .....+..+..+++|+.|++++ +.+..+.+ .+.. +++|+.|++++|++....+..+..
T Consensus       170 ~~~~l~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~  245 (306)
T 2z66_A          170 IFTELRNLTFLDLSQCQ--LEQLSPTAFNSLSSLQVLNMSH-NNFFSLDTFPYKC-LNSLQVLDYSLNHIMTSKKQELQH  245 (306)
T ss_dssp             CCTTCTTCCEEECTTSC--CCEECTTTTTTCTTCCEEECTT-SCCSBCCSGGGTT-CTTCCEEECTTSCCCBCSSSSCCC
T ss_pred             HHhhCcCCCEEECCCCC--cCCcCHHHhcCCCCCCEEECCC-CccCccChhhccC-cccCCEeECCCCCCcccCHHHHHh
Confidence            88999999999999996  5555577888999999999998 66777733 6777 899999999999998877778888


Q ss_pred             CC-CCCeEEEecccccC
Q 037494          361 LP-RLQVMKLKRNSYFG  376 (394)
Q Consensus       361 l~-~L~~L~l~~n~~~~  376 (394)
                      ++ +|+.|++++|.+..
T Consensus       246 ~~~~L~~L~L~~N~~~~  262 (306)
T 2z66_A          246 FPSSLAFLNLTQNDFAC  262 (306)
T ss_dssp             CCTTCCEEECTTCCEEC
T ss_pred             hhccCCEEEccCCCeec
Confidence            85 89999999887754

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.89  E-value=7.5e-23  Score=205.31  Aligned_cols=254  Identities=18%  Similarity=0.161  Sum_probs=182.9

Q ss_pred             CCceEEEEEEeCCcchhhcc--CCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCc-ccccCcccc
Q 037494          121 LATVKRCFILEDLIEFISLE--QSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFP-PGLENLFLL  197 (394)
Q Consensus       121 ~~~~r~L~l~~~~~~~~~~~--~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L  197 (394)
                      ...++.+.+..+....+|..  ..+++|++|.+.++....    ..+..|..+++|++|++++|.+..+| ..++.+++|
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  125 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEE----IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL  125 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCE----ECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCC----CChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCC
Confidence            34566777765555555543  567778888887777652    11323477888888888888877665 445778888


Q ss_pred             cEEecCCCCCccccccc-cCCCCCcEEEcc-cCCccccch-hhccCccCcEEEeeCCCCCCCCCCCCCCCC---------
Q 037494          198 KYLQLNIPTLKCLPLLI-CTLLNLETLEMP-AGYIDHSPE-GIWMMQKLMHLNFDSITLPAPPKNYSSSLK---------  265 (394)
Q Consensus       198 ~~L~l~~~~l~~lp~~l-~~l~~L~~L~l~-~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~---------  265 (394)
                      ++|++++|.+..+|+.+ +++++|++|+++ | .+..+|+ .++.+++|++|+++ +|.+..++.  +.++         
T Consensus       126 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~-~N~l~~~~~--~~l~~L~~L~l~~  201 (597)
T 3oja_B          126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLS-SNRLTHVDL--SLIPSLFHANVSY  201 (597)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECT-TSCCSBCCG--GGCTTCSEEECCS
T ss_pred             CEEEeeCCCCCCCCHHHhccCCCCCEEEeeCC-cCCCCChhhhhcCCcCcEEECc-CCCCCCcCh--hhhhhhhhhhccc
Confidence            88888888887777664 778888888888 7 6666554 57777888888887 776544431  1222         


Q ss_pred             -------------------------------cCceeCccccCCCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCC
Q 037494          266 -------------------------------NLIFISALHPSSCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHK  314 (394)
Q Consensus       266 -------------------------------~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~  314 (394)
                                                     +|+.|.+.++....+..++.+++|+.|++++|.  .....|..++.+++
T Consensus       202 n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~--l~~~~~~~~~~l~~  279 (597)
T 3oja_B          202 NLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNE--LEKIMYHPFVKMQR  279 (597)
T ss_dssp             SCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC--CCEEESGGGTTCSS
T ss_pred             CccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCc--cCCCCHHHhcCccC
Confidence                                           345555555553334667888899999999987  66666788889999


Q ss_pred             CcEEEecCCCCCCccCC-CCCCCCCCceEEEEecccCCCCCcccccCCCCCCeEEEecccccCceeEEeCCCCCcCCccc
Q 037494          315 LECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFGRKLACVGSGGFPELQVL  393 (394)
Q Consensus       315 L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~fp~L~~L  393 (394)
                      |+.|+|++ +.+..+ | .+.. +++|+.|+|++|.+.. .++.++.+++|+.|++++|.+.+..     ...+++|+.|
T Consensus       280 L~~L~Ls~-N~l~~l-~~~~~~-l~~L~~L~Ls~N~l~~-i~~~~~~l~~L~~L~L~~N~l~~~~-----~~~~~~L~~L  350 (597)
T 3oja_B          280 LERLYISN-NRLVAL-NLYGQP-IPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTLK-----LSTHHTLKNL  350 (597)
T ss_dssp             CCEEECTT-SCCCEE-ECSSSC-CTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCCC-----CCTTCCCSEE
T ss_pred             CCEEECCC-CCCCCC-Cccccc-CCCCcEEECCCCCCCc-cCcccccCCCCCEEECCCCCCCCcC-----hhhcCCCCEE
Confidence            99999998 778888 7 7777 8999999999999863 4456788999999999999887654     5678888776

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.89  E-value=1.4e-22  Score=197.89  Aligned_cols=263  Identities=17%  Similarity=0.090  Sum_probs=155.7

Q ss_pred             CCceEEEEEEeCCcchhhc--cCCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCcc-cccCcccc
Q 037494          121 LATVKRCFILEDLIEFISL--EQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPP-GLENLFLL  197 (394)
Q Consensus       121 ~~~~r~L~l~~~~~~~~~~--~~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L  197 (394)
                      +..++.|.+..+....++.  ...+++|+.|.+.++....    ..+..|.++++|++|++++|.+..+|. .++++++|
T Consensus        31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  106 (477)
T 2id5_A           31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSA----VEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNL  106 (477)
T ss_dssp             CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTC
T ss_pred             CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCE----eChhhhhCCccCCEEECCCCcCCccCcccccCCCCC
Confidence            4456677776555555432  2566777777777766542    113333667777777777777666653 35667777


Q ss_pred             cEEecCCCCCccc-cccccCCCCCcEEEcc-cCCccccc-hhhccCccCcEEEeeCCCCCCCCCCC-CCCCCcCceeCcc
Q 037494          198 KYLQLNIPTLKCL-PLLICTLLNLETLEMP-AGYIDHSP-EGIWMMQKLMHLNFDSITLPAPPKNY-SSSLKNLIFISAL  273 (394)
Q Consensus       198 ~~L~l~~~~l~~l-p~~l~~l~~L~~L~l~-~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~-l~~l~~L~~L~~~  273 (394)
                      ++|++++|.+..+ |..+.++++|++|+++ | .+..++ ..+..+++|++|+++ +|.+..+|.. ++.+++|+.|++.
T Consensus       107 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~l~~l~~L~~L~l~  184 (477)
T 2id5_A          107 TKLDISENKIVILLDYMFQDLYNLKSLEVGDN-DLVYISHRAFSGLNSLEQLTLE-KCNLTSIPTEALSHLHGLIVLRLR  184 (477)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEEECCT-TCCEECTTSSTTCTTCCEEEEE-SCCCSSCCHHHHTTCTTCCEEEEE
T ss_pred             CEEECCCCccccCChhHccccccCCEEECCCC-ccceeChhhccCCCCCCEEECC-CCcCcccChhHhcccCCCcEEeCC
Confidence            7777777766654 3445666666666666 5 554443 345566666666666 6655554432 4555555555555


Q ss_pred             ccC--CCcchhcCCCCCCCeEEEeecCC---------------------ccccchh-hhhcCCCCCcEEEecCCCCCCcc
Q 037494          274 HPS--SCTPDILSRLPTVQTLRISGDLS---------------------HYHSGVS-KSLCELHKLECLKLVNGSKLSRM  329 (394)
Q Consensus       274 ~~~--~~~~~~l~~l~~L~~L~l~~~~~---------------------~~~~~~~-~~l~~~~~L~~L~l~~~~~L~~L  329 (394)
                      ++.  ......+..+++|+.|+++++..                     .....++ ..+..+++|+.|++++ +.+..+
T Consensus       185 ~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~  263 (477)
T 2id5_A          185 HLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSY-NPISTI  263 (477)
T ss_dssp             SCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCS-SCCCEE
T ss_pred             CCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCC-CcCCcc
Confidence            544  11122344444444444444320                     0122233 4566677777777776 456666


Q ss_pred             CC-CCCCCCCCceEEEEecccCCCCCcccccCCCCCCeEEEecccccCceeEEeCCCCCcCCccc
Q 037494          330 VL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFGRKLACVGSGGFPELQVL  393 (394)
Q Consensus       330 ~p-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~fp~L~~L  393 (394)
                      .+ .+.. +++|+.|+|++|++....+..+..+++|+.|++++|.+.......  ...+++|+.|
T Consensus       264 ~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L  325 (477)
T 2id5_A          264 EGSMLHE-LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESV--FHSVGNLETL  325 (477)
T ss_dssp             CTTSCTT-CTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGG--BSCGGGCCEE
T ss_pred             Chhhccc-cccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhH--cCCCcccCEE
Confidence            23 6777 888888888888887666677888888888888888776543111  1245566654

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.88  E-value=1.6e-23  Score=211.53  Aligned_cols=210  Identities=17%  Similarity=0.173  Sum_probs=125.8

Q ss_pred             CceeEEEcCCCCCCCCcc--cccCcccccEEecCCCCCc-cccccccCCCCCcEEEcc-cCCccccchhhccCcc-CcEE
Q 037494          172 KYLRVLNWGSAVLDQFPP--GLENLFLLKYLQLNIPTLK-CLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQK-LMHL  246 (394)
Q Consensus       172 ~~L~~L~l~~~~~~~lp~--~i~~l~~L~~L~l~~~~l~-~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~-L~~L  246 (394)
                      ++|++|++++|.++.+|.  .++.+++|++|++++|.+. .+| .++.+++|++|+++ | .+..+|..++.+++ |++|
T Consensus       305 ~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~~L~~L  382 (636)
T 4eco_A          305 EKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYN-QITEIPANFCGFTEQVENL  382 (636)
T ss_dssp             GTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSS-EEEECCTTSEEECTTCCEE
T ss_pred             CCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCC-ccccccHhhhhhcccCcEE
Confidence            445555555555444554  4555555555555555555 455 55555555555555 4 45555555566666 6666


Q ss_pred             EeeCCCCCCCCCCCCCCCC--cCceeCccccC--CCcchhcC-------CCCCCCeEEEeecCCccccchhhh-hcCCCC
Q 037494          247 NFDSITLPAPPKNYSSSLK--NLIFISALHPS--SCTPDILS-------RLPTVQTLRISGDLSHYHSGVSKS-LCELHK  314 (394)
Q Consensus       247 ~l~~~~~~~~~p~~l~~l~--~L~~L~~~~~~--~~~~~~l~-------~l~~L~~L~l~~~~~~~~~~~~~~-l~~~~~  314 (394)
                      +++ +|.+..+|..++.++  +|+.|++.++.  ...+..++       .+++|+.|++++|.  . ..+|.. +..+++
T Consensus       383 ~Ls-~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~--l-~~lp~~~~~~l~~  458 (636)
T 4eco_A          383 SFA-HNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ--I-SKFPKELFSTGSP  458 (636)
T ss_dssp             ECC-SSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSC--C-CSCCTHHHHTTCC
T ss_pred             Ecc-CCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCc--c-CcCCHHHHccCCC
Confidence            666 666555665555433  56666666655  33444455       55667777777764  2 244543 345777


Q ss_pred             CcEEEecCCCCCCccCC-CCCCCC-------CCceEEEEecccCCCCCccccc--CCCCCCeEEEecccccCceeEEeCC
Q 037494          315 LECLKLVNGSKLSRMVL-SEYQFP-------PSLIQLSLSNTELMEDPMPMLE--RLPRLQVMKLKRNSYFGRKLACVGS  384 (394)
Q Consensus       315 L~~L~l~~~~~L~~L~p-~~~~~l-------~~L~~L~L~~~~l~~~~~~~l~--~l~~L~~L~l~~n~~~~~~~~~~~~  384 (394)
                      |+.|++++ +.+..+ | ......       ++|+.|+|++|++.. .+..+.  .+++|+.|++++|.+.+..  .. .
T Consensus       459 L~~L~Ls~-N~l~~i-~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~~~l~~L~~L~Ls~N~l~~ip--~~-~  532 (636)
T 4eco_A          459 LSSINLMG-NMLTEI-PKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSKFP--TQ-P  532 (636)
T ss_dssp             CSEEECCS-SCCSBC-CSSSSEETTEECTTGGGCCEEECCSSCCCB-CCGGGSTTTCTTCCEEECCSSCCSSCC--CG-G
T ss_pred             CCEEECCC-CCCCCc-CHHHhccccccccccCCccEEECcCCcCCc-cChhhhhccCCCcCEEECCCCCCCCcC--hh-h
Confidence            88888877 566666 5 332202       289999999999873 344555  8999999999999887622  12 3


Q ss_pred             CCCcCCccc
Q 037494          385 GGFPELQVL  393 (394)
Q Consensus       385 ~~fp~L~~L  393 (394)
                      ..+++|+.|
T Consensus       533 ~~l~~L~~L  541 (636)
T 4eco_A          533 LNSSTLKGF  541 (636)
T ss_dssp             GGCSSCCEE
T ss_pred             hcCCCCCEE
Confidence            357777765

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.88  E-value=4.9e-23  Score=212.52  Aligned_cols=245  Identities=17%  Similarity=0.132  Sum_probs=157.0

Q ss_pred             ceEEEEEEeCCcch-hhcc-CCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCC-CCcccccCcccccE
Q 037494          123 TVKRCFILEDLIEF-ISLE-QSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLD-QFPPGLENLFLLKY  199 (394)
Q Consensus       123 ~~r~L~l~~~~~~~-~~~~-~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~-~lp~~i~~l~~L~~  199 (394)
                      .++.+.+..+.... ++.. ..+++|+.|.+.++....    .++..+..+++|++|++++|.+. .+|..++.+++|++
T Consensus       395 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  470 (768)
T 3rgz_A          395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG----TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLET  470 (768)
T ss_dssp             CCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEES----CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred             CccEEECCCCccccccCHHHhcCCCCCEEECcCCcccC----cccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceE
Confidence            35555555333321 2222 455666666666654431    22333366666666666666665 55666666666667


Q ss_pred             EecCCCCCc-cccccccCCCCCcEEEcc-cCCcc-ccchhhccCccCcEEEeeCCCCC-CCCCCCCCCCCcCceeCcccc
Q 037494          200 LQLNIPTLK-CLPLLICTLLNLETLEMP-AGYID-HSPEGIWMMQKLMHLNFDSITLP-APPKNYSSSLKNLIFISALHP  275 (394)
Q Consensus       200 L~l~~~~l~-~lp~~l~~l~~L~~L~l~-~~~l~-~lp~~i~~l~~L~~L~l~~~~~~-~~~p~~l~~l~~L~~L~~~~~  275 (394)
                      |++++|.+. .+|..++++++|++|+++ | .+. .+|..++.+++|++|+++ +|.+ ..+|..++.+++|+.|++.+|
T Consensus       471 L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N-~l~~~~p~~~~~l~~L~~L~L~-~N~l~~~~p~~l~~l~~L~~L~Ls~N  548 (768)
T 3rgz_A          471 LILDFNDLTGEIPSGLSNCTNLNWISLSNN-RLTGEIPKWIGRLENLAILKLS-NNSFSGNIPAELGDCRSLIWLDLNTN  548 (768)
T ss_dssp             EECCSSCCCSCCCGGGGGCTTCCEEECCSS-CCCSCCCGGGGGCTTCCEEECC-SSCCEEECCGGGGGCTTCCEEECCSS
T ss_pred             EEecCCcccCcCCHHHhcCCCCCEEEccCC-ccCCcCChHHhcCCCCCEEECC-CCcccCcCCHHHcCCCCCCEEECCCC
Confidence            766666665 456666666677777776 6 443 566666666777777776 6663 355666666666666666655


Q ss_pred             C--CCcch----------------------------------------------------------------------hc
Q 037494          276 S--SCTPD----------------------------------------------------------------------IL  283 (394)
Q Consensus       276 ~--~~~~~----------------------------------------------------------------------~l  283 (394)
                      .  +..|.                                                                      .+
T Consensus       549 ~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~  628 (768)
T 3rgz_A          549 LFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF  628 (768)
T ss_dssp             EEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSC
T ss_pred             ccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhh
Confidence            4  22222                                                                      23


Q ss_pred             CCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCC-ccCC-CCCCCCCCceEEEEecccCCCCCcccccCC
Q 037494          284 SRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLS-RMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERL  361 (394)
Q Consensus       284 ~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~-~L~p-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l  361 (394)
                      +.+++|+.|++++|.  ..+.+|..++.++.|+.|+|++ +++. .+ | .++. +++|+.|+|++|+++...+..++.+
T Consensus       629 ~~l~~L~~LdLs~N~--l~g~ip~~l~~l~~L~~L~Ls~-N~l~g~i-p~~l~~-L~~L~~LdLs~N~l~g~ip~~l~~l  703 (768)
T 3rgz_A          629 DNNGSMMFLDMSYNM--LSGYIPKEIGSMPYLFILNLGH-NDISGSI-PDEVGD-LRGLNILDLSSNKLDGRIPQAMSAL  703 (768)
T ss_dssp             SSSBCCCEEECCSSC--CBSCCCGGGGGCTTCCEEECCS-SCCCSCC-CGGGGG-CTTCCEEECCSSCCEECCCGGGGGC
T ss_pred             hccccccEEECcCCc--ccccCCHHHhccccCCEEeCcC-CccCCCC-ChHHhC-CCCCCEEECCCCcccCcCChHHhCC
Confidence            345667777777776  6667777788888888888877 4454 45 7 7777 8888888888888877777778888


Q ss_pred             CCCCeEEEecccccCce
Q 037494          362 PRLQVMKLKRNSYFGRK  378 (394)
Q Consensus       362 ~~L~~L~l~~n~~~~~~  378 (394)
                      ++|++|++++|.++|..
T Consensus       704 ~~L~~L~ls~N~l~g~i  720 (768)
T 3rgz_A          704 TMLTEIDLSNNNLSGPI  720 (768)
T ss_dssp             CCCSEEECCSSEEEEEC
T ss_pred             CCCCEEECcCCcccccC
Confidence            88888888888776654

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.88  E-value=2.2e-22  Score=187.27  Aligned_cols=239  Identities=17%  Similarity=0.076  Sum_probs=166.7

Q ss_pred             CCceEEEEEEeCCcchhhc--cCCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCcccccCccccc
Q 037494          121 LATVKRCFILEDLIEFISL--EQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLK  198 (394)
Q Consensus       121 ~~~~r~L~l~~~~~~~~~~--~~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~  198 (394)
                      ...++.|.+..+....++.  ...+++|+.|.+.++....    ..+..|.++++|++|++++|.+..+|..+.  ++|+
T Consensus        53 ~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~  126 (332)
T 2ft3_A           53 SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK----IHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLV  126 (332)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE----ECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCC
T ss_pred             CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCc----cCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCC
Confidence            3456667776555555433  2566777777777766652    113334777777777777777777766554  6777


Q ss_pred             EEecCCCCCcccccc-ccCCCCCcEEEcc-cCCcc---ccchhhccCccCcEEEeeCCCCCCCCCCCCCCCCcCceeCcc
Q 037494          199 YLQLNIPTLKCLPLL-ICTLLNLETLEMP-AGYID---HSPEGIWMMQKLMHLNFDSITLPAPPKNYSSSLKNLIFISAL  273 (394)
Q Consensus       199 ~L~l~~~~l~~lp~~-l~~l~~L~~L~l~-~~~l~---~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~  273 (394)
                      +|++++|.+..+|.. ++.+++|++|+++ | .+.   ..|..+..+ +|++|+++ +|.+..+|..+.  ++|++|++.
T Consensus       127 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l-~L~~L~l~-~n~l~~l~~~~~--~~L~~L~l~  201 (332)
T 2ft3_A          127 ELRIHDNRIRKVPKGVFSGLRNMNCIEMGGN-PLENSGFEPGAFDGL-KLNYLRIS-EAKLTGIPKDLP--ETLNELHLD  201 (332)
T ss_dssp             EEECCSSCCCCCCSGGGSSCSSCCEEECCSC-CCBGGGSCTTSSCSC-CCSCCBCC-SSBCSSCCSSSC--SSCSCCBCC
T ss_pred             EEECCCCccCccCHhHhCCCccCCEEECCCC-ccccCCCCcccccCC-ccCEEECc-CCCCCccCcccc--CCCCEEECC
Confidence            777777777766643 6677777777777 6 553   234445555 77777777 777666766554  678888888


Q ss_pred             ccC--CCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCccCC-CCCCCCCCceEEEEecccC
Q 037494          274 HPS--SCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTEL  350 (394)
Q Consensus       274 ~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l  350 (394)
                      ++.  ...+..+..+++|+.|++++|.  .....+..+..+++|+.|++++ +.+..+ | ++.. +++|+.|++++|++
T Consensus       202 ~n~i~~~~~~~l~~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~L~~-N~l~~l-p~~l~~-l~~L~~L~l~~N~l  276 (332)
T 2ft3_A          202 HNKIQAIELEDLLRYSKLYRLGLGHNQ--IRMIENGSLSFLPTLRELHLDN-NKLSRV-PAGLPD-LKLLQVVYLHTNNI  276 (332)
T ss_dssp             SSCCCCCCTTSSTTCTTCSCCBCCSSC--CCCCCTTGGGGCTTCCEEECCS-SCCCBC-CTTGGG-CTTCCEEECCSSCC
T ss_pred             CCcCCccCHHHhcCCCCCCEEECCCCc--CCcCChhHhhCCCCCCEEECCC-CcCeec-Chhhhc-CccCCEEECCCCCC
Confidence            777  3344678888899999998886  4444455778888999999988 678888 8 8887 89999999999988


Q ss_pred             CCCCcccccC------CCCCCeEEEeccccc
Q 037494          351 MEDPMPMLER------LPRLQVMKLKRNSYF  375 (394)
Q Consensus       351 ~~~~~~~l~~------l~~L~~L~l~~n~~~  375 (394)
                      +..+...+..      .++|+.|++++|.+.
T Consensus       277 ~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~  307 (332)
T 2ft3_A          277 TKVGVNDFCPVGFGVKRAYYNGISLFNNPVP  307 (332)
T ss_dssp             CBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred             CccChhHccccccccccccccceEeecCccc
Confidence            7766655543      467889999888765

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.88  E-value=4.2e-22  Score=193.23  Aligned_cols=239  Identities=18%  Similarity=0.146  Sum_probs=197.5

Q ss_pred             EEEEEEeCCcchhhccCCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCc-ccccCcccccEEecC
Q 037494          125 KRCFILEDLIEFISLEQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFP-PGLENLFLLKYLQLN  203 (394)
Q Consensus       125 r~L~l~~~~~~~~~~~~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~  203 (394)
                      +.+.........+|.. -.++++.|.+.++....    ..++.|.++++|++|++++|.+..++ ..+..+++|++|+++
T Consensus        57 ~~v~c~~~~l~~iP~~-~~~~l~~L~L~~n~i~~----~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~  131 (452)
T 3zyi_A           57 SKVVCTRRGLSEVPQG-IPSNTRYLNLMENNIQM----IQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF  131 (452)
T ss_dssp             CEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCE----ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             cEEEECCCCcCccCCC-CCCCccEEECcCCcCce----ECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence            3444443344455543 23689999999998862    11444599999999999999998665 789999999999999


Q ss_pred             CCCCcccccc-ccCCCCCcEEEcc-cCCccccch-hhccCccCcEEEeeCCCC-CCCCCC-CCCCCCcCceeCccccCCC
Q 037494          204 IPTLKCLPLL-ICTLLNLETLEMP-AGYIDHSPE-GIWMMQKLMHLNFDSITL-PAPPKN-YSSSLKNLIFISALHPSSC  278 (394)
Q Consensus       204 ~~~l~~lp~~-l~~l~~L~~L~l~-~~~l~~lp~-~i~~l~~L~~L~l~~~~~-~~~~p~-~l~~l~~L~~L~~~~~~~~  278 (394)
                      +|.+..+|.. ++.+++|++|+++ | .+..+|. .+..+++|++|+++ +|. +..++. .++.+++|+.|++.++...
T Consensus       132 ~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~-~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~  209 (452)
T 3zyi_A          132 DNWLTVIPSGAFEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLG-ELKKLEYISEGAFEGLFNLKYLNLGMCNIK  209 (452)
T ss_dssp             SSCCSBCCTTTSSSCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECC-CCTTCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred             CCcCCccChhhhcccCCCCEEECCCC-CcceeCHhHHhcCCcccEEeCC-CCCCccccChhhccCCCCCCEEECCCCccc
Confidence            9999998865 7889999999999 8 8888886 68899999999999 755 666665 4889999999999999833


Q ss_pred             cchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCccCC-CCCCCCCCceEEEEecccCCCCCccc
Q 037494          279 TPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPM  357 (394)
Q Consensus       279 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l~~~~~~~  357 (394)
                      ....+..+++|+.|++++|.  .....+..+..+++|+.|++++ +.+..+.| .+.. +++|+.|+|++|+++..+...
T Consensus       210 ~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~  285 (452)
T 3zyi_A          210 DMPNLTPLVGLEELEMSGNH--FPEIRPGSFHGLSSLKKLWVMN-SQVSLIERNAFDG-LASLVELNLAHNNLSSLPHDL  285 (452)
T ss_dssp             SCCCCTTCTTCCEEECTTSC--CSEECGGGGTTCTTCCEEECTT-SCCCEECTTTTTT-CTTCCEEECCSSCCSCCCTTS
T ss_pred             ccccccccccccEEECcCCc--CcccCcccccCccCCCEEEeCC-CcCceECHHHhcC-CCCCCEEECCCCcCCccChHH
Confidence            44568899999999999997  6666688899999999999998 67777745 7888 999999999999998777777


Q ss_pred             ccCCCCCCeEEEecccc
Q 037494          358 LERLPRLQVMKLKRNSY  374 (394)
Q Consensus       358 l~~l~~L~~L~l~~n~~  374 (394)
                      +..+++|+.|++++|.+
T Consensus       286 ~~~l~~L~~L~L~~Np~  302 (452)
T 3zyi_A          286 FTPLRYLVELHLHHNPW  302 (452)
T ss_dssp             STTCTTCCEEECCSSCE
T ss_pred             hccccCCCEEEccCCCc
Confidence            88999999999988864

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.88  E-value=8e-22  Score=192.55  Aligned_cols=232  Identities=19%  Similarity=0.142  Sum_probs=178.2

Q ss_pred             CCcchhhccCCCCCccEEEEecCCCccchhcch-hHHhccCCceeEEEcCCCCCCCC-cccccCcccccEEecCCCCCcc
Q 037494          132 DLIEFISLEQSDMYLQSFLNHSSESDHLALIDC-ENFCENFKYLRVLNWGSAVLDQF-PPGLENLFLLKYLQLNIPTLKC  209 (394)
Q Consensus       132 ~~~~~~~~~~~~~~lr~L~l~~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~l~~  209 (394)
                      .....+|.. -.+.++.|.+.++...     .+ ++.|.++++|++|++++|.+..+ |..++++++|++|++++|.++.
T Consensus        21 ~~l~~ip~~-~~~~l~~L~L~~n~l~-----~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~   94 (477)
T 2id5_A           21 KRFVAVPEG-IPTETRLLDLGKNRIK-----TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKL   94 (477)
T ss_dssp             CCCSSCCSC-CCTTCSEEECCSSCCC-----EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCS
T ss_pred             CCcCcCCCC-CCCCCcEEECCCCccc-----eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCc
Confidence            334445543 2468999999999886     33 44459999999999999999866 7889999999999999999999


Q ss_pred             cccc-ccCCCCCcEEEcc-cCCcccc-chhhccCccCcEEEeeCCCCCCCC-CCCCCCCCcCceeCccccC-C-Ccchhc
Q 037494          210 LPLL-ICTLLNLETLEMP-AGYIDHS-PEGIWMMQKLMHLNFDSITLPAPP-KNYSSSLKNLIFISALHPS-S-CTPDIL  283 (394)
Q Consensus       210 lp~~-l~~l~~L~~L~l~-~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~-p~~l~~l~~L~~L~~~~~~-~-~~~~~l  283 (394)
                      +|.. ++++++|++|+++ | .+..+ |..+..+++|++|+++ +|.+..+ |..++.+++|++|++.++. . .....+
T Consensus        95 ~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l  172 (477)
T 2id5_A           95 IPLGVFTGLSNLTKLDISEN-KIVILLDYMFQDLYNLKSLEVG-DNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEAL  172 (477)
T ss_dssp             CCTTSSTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEEEC-CTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHH
T ss_pred             cCcccccCCCCCCEEECCCC-ccccCChhHccccccCCEEECC-CCccceeChhhccCCCCCCEEECCCCcCcccChhHh
Confidence            9865 6899999999999 8 77666 4578999999999999 9886555 4578999999999999988 3 334568


Q ss_pred             CCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCccCC-CCCCCCCCceEEEEecccCCCCCcccccCCC
Q 037494          284 SRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLP  362 (394)
Q Consensus       284 ~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~  362 (394)
                      ..+++|+.|+++++.  .....+..+..+++|+.|++++++.+..+ | .... ..+|+.|++++|++...+...+..++
T Consensus       173 ~~l~~L~~L~l~~n~--i~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~  248 (477)
T 2id5_A          173 SHLHGLIVLRLRHLN--INAIRDYSFKRLYRLKVLEISHWPYLDTM-TPNCLY-GLNLTSLSITHCNLTAVPYLAVRHLV  248 (477)
T ss_dssp             TTCTTCCEEEEESCC--CCEECTTCSCSCTTCCEEEEECCTTCCEE-CTTTTT-TCCCSEEEEESSCCCSCCHHHHTTCT
T ss_pred             cccCCCcEEeCCCCc--CcEeChhhcccCcccceeeCCCCcccccc-Cccccc-CccccEEECcCCcccccCHHHhcCcc
Confidence            999999999999997  44445567888899999999886666666 4 3333 44666666666666544444555666


Q ss_pred             CCCeEEEeccccc
Q 037494          363 RLQVMKLKRNSYF  375 (394)
Q Consensus       363 ~L~~L~l~~n~~~  375 (394)
                      +|+.|++++|.+.
T Consensus       249 ~L~~L~Ls~n~l~  261 (477)
T 2id5_A          249 YLRFLNLSYNPIS  261 (477)
T ss_dssp             TCCEEECCSSCCC
T ss_pred             ccCeeECCCCcCC
Confidence            6666666555543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.88  E-value=5.1e-22  Score=191.99  Aligned_cols=239  Identities=16%  Similarity=0.161  Sum_probs=196.7

Q ss_pred             EEEEEEeCCcchhhccCCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCc-ccccCcccccEEecC
Q 037494          125 KRCFILEDLIEFISLEQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFP-PGLENLFLLKYLQLN  203 (394)
Q Consensus       125 r~L~l~~~~~~~~~~~~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~  203 (394)
                      +.+.........+|.. -.++++.|.+.++....    ..+..|.++++|++|++++|.+..++ ..+..+++|++|+++
T Consensus        46 ~~v~c~~~~l~~iP~~-~~~~l~~L~L~~n~i~~----~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~  120 (440)
T 3zyj_A           46 SKVICVRKNLREVPDG-ISTNTRLLNLHENQIQI----IKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF  120 (440)
T ss_dssp             CEEECCSCCCSSCCSC-CCTTCSEEECCSCCCCE----ECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred             CEEEeCCCCcCcCCCC-CCCCCcEEEccCCcCCe----eCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence            3444443444455543 24789999999998863    11344499999999999999998765 788999999999999


Q ss_pred             CCCCccccc-cccCCCCCcEEEcc-cCCccccch-hhccCccCcEEEeeCCCC-CCCCCC-CCCCCCcCceeCccccCCC
Q 037494          204 IPTLKCLPL-LICTLLNLETLEMP-AGYIDHSPE-GIWMMQKLMHLNFDSITL-PAPPKN-YSSSLKNLIFISALHPSSC  278 (394)
Q Consensus       204 ~~~l~~lp~-~l~~l~~L~~L~l~-~~~l~~lp~-~i~~l~~L~~L~l~~~~~-~~~~p~-~l~~l~~L~~L~~~~~~~~  278 (394)
                      +|.++.+|. .+..+++|++|+++ | .+..+|. .+..+++|++|+++ +|. ...++. .++.+++|+.|++.++...
T Consensus       121 ~n~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~-~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~  198 (440)
T 3zyj_A          121 DNRLTTIPNGAFVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLG-ELKRLSYISEGAFEGLSNLRYLNLAMCNLR  198 (440)
T ss_dssp             SSCCSSCCTTTSCSCSSCCEEECCSC-CCCEECTTTTTTCTTCCEEECC-CCTTCCEECTTTTTTCSSCCEEECTTSCCS
T ss_pred             CCcCCeeCHhHhhccccCceeeCCCC-cccccCHHHhhhCcccCEeCCC-CCCCcceeCcchhhcccccCeecCCCCcCc
Confidence            999999886 58899999999999 8 8888876 68899999999999 755 666665 4889999999999999843


Q ss_pred             cchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCccCC-CCCCCCCCceEEEEecccCCCCCccc
Q 037494          279 TPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPM  357 (394)
Q Consensus       279 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l~~~~~~~  357 (394)
                      ..+.+..+++|+.|++++|.  .....+..+..+++|+.|++++ +.+..+.| .+.. +++|+.|+|++|+++..+...
T Consensus       199 ~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~  274 (440)
T 3zyj_A          199 EIPNLTPLIKLDELDLSGNH--LSAIRPGSFQGLMHLQKLWMIQ-SQIQVIERNAFDN-LQSLVEINLAHNNLTLLPHDL  274 (440)
T ss_dssp             SCCCCTTCSSCCEEECTTSC--CCEECTTTTTTCTTCCEEECTT-CCCCEECTTSSTT-CTTCCEEECTTSCCCCCCTTT
T ss_pred             cccccCCCcccCEEECCCCc--cCccChhhhccCccCCEEECCC-CceeEEChhhhcC-CCCCCEEECCCCCCCccChhH
Confidence            44468899999999999996  5566678899999999999998 77888745 7888 999999999999998877777


Q ss_pred             ccCCCCCCeEEEecccc
Q 037494          358 LERLPRLQVMKLKRNSY  374 (394)
Q Consensus       358 l~~l~~L~~L~l~~n~~  374 (394)
                      +..+++|+.|++++|.+
T Consensus       275 ~~~l~~L~~L~L~~Np~  291 (440)
T 3zyj_A          275 FTPLHHLERIHLHHNPW  291 (440)
T ss_dssp             TSSCTTCCEEECCSSCE
T ss_pred             hccccCCCEEEcCCCCc
Confidence            89999999999988864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.88  E-value=1.9e-22  Score=208.27  Aligned_cols=243  Identities=14%  Similarity=0.141  Sum_probs=137.7

Q ss_pred             CCceEEEEEEeCCcch------------------hhcc-C--CCCCccEEEEecCCCccchhcchhHHhccCCceeEEEc
Q 037494          121 LATVKRCFILEDLIEF------------------ISLE-Q--SDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNW  179 (394)
Q Consensus       121 ~~~~r~L~l~~~~~~~------------------~~~~-~--~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l  179 (394)
                      ..+++.|.+..+....                  +|.. .  .+++|+.|.+.++....    .+|..+.++++|++|++
T Consensus       447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~----~iP~~l~~L~~L~~L~L  522 (876)
T 4ecn_A          447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMT----QLPDFLYDLPELQSLNI  522 (876)
T ss_dssp             CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCC----SCCGGGGGCSSCCEEEC
T ss_pred             CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCc----cChHHHhCCCCCCEEEC
Confidence            5567788887666655                  5554 3  57778888887776542    33443466666666666


Q ss_pred             CCCC-CCC--CcccccCcc-------cccEEecCCCCCccccc--cccCCCCCcEEEcc-cCCccccchhhccCccCcEE
Q 037494          180 GSAV-LDQ--FPPGLENLF-------LLKYLQLNIPTLKCLPL--LICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHL  246 (394)
Q Consensus       180 ~~~~-~~~--lp~~i~~l~-------~L~~L~l~~~~l~~lp~--~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L  246 (394)
                      ++|. ++.  +|..++.+.       +|++|++++|.+..+|.  .++++++|++|+++ | .+..+| .++.+++|+.|
T Consensus       523 s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N-~l~~lp-~~~~L~~L~~L  600 (876)
T 4ecn_A          523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHN-KVRHLE-AFGTNVKLTDL  600 (876)
T ss_dssp             TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTS-CCCBCC-CCCTTSEESEE
T ss_pred             cCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCC-Ccccch-hhcCCCcceEE
Confidence            6665 552  555454444       66666666666556665  55666666666666 5 455555 55555566666


Q ss_pred             EeeCCCCCCCCCCCCCCCCc-CceeCccccC-CCcchhcCCC-------------------------------CCCCeEE
Q 037494          247 NFDSITLPAPPKNYSSSLKN-LIFISALHPS-SCTPDILSRL-------------------------------PTVQTLR  293 (394)
Q Consensus       247 ~l~~~~~~~~~p~~l~~l~~-L~~L~~~~~~-~~~~~~l~~l-------------------------------~~L~~L~  293 (394)
                      +++ +|.+..+|..++.+++ |+.|++.++. ...+..++.+                               ++|+.|+
T Consensus       601 ~Ls-~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~  679 (876)
T 4ecn_A          601 KLD-YNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVT  679 (876)
T ss_dssp             ECC-SSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEE
T ss_pred             ECc-CCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEE
Confidence            665 5554455555555555 5555555554 2222222222                               2455555


Q ss_pred             EeecCCccccchhhhh-cCCCCCcEEEecCCCCCCccCC-CCCCC-------CCCceEEEEecccCCCCCccccc--CCC
Q 037494          294 ISGDLSHYHSGVSKSL-CELHKLECLKLVNGSKLSRMVL-SEYQF-------PPSLIQLSLSNTELMEDPMPMLE--RLP  362 (394)
Q Consensus       294 l~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~L~~L~p-~~~~~-------l~~L~~L~L~~~~l~~~~~~~l~--~l~  362 (394)
                      +++|.   ...+|..+ ..+++|+.|+|++ +.+..+ | ++...       +++|+.|+|++|++.. .+..+.  .++
T Consensus       680 Ls~N~---L~~lp~~~~~~l~~L~~L~Ls~-N~L~~i-p~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~-lp~~l~~~~l~  753 (876)
T 4ecn_A          680 LSYNE---IQKFPTELFATGSPISTIILSN-NLMTSI-PENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLP  753 (876)
T ss_dssp             CCSSC---CCSCCHHHHHTTCCCSEEECCS-CCCSCC-CTTSSSCTTSCCTTGGGCCEEECCSSCCCC-CCGGGSTTTCT
T ss_pred             ccCCc---CCccCHHHHccCCCCCEEECCC-CcCCcc-ChHHhccccccccccCCccEEECCCCCCcc-chHHhhhccCC
Confidence            55553   22444443 3567777777776 455555 4 33220       1267777777776652 333444  667


Q ss_pred             CCCeEEEecccccC
Q 037494          363 RLQVMKLKRNSYFG  376 (394)
Q Consensus       363 ~L~~L~l~~n~~~~  376 (394)
                      +|+.|+|++|.+.+
T Consensus       754 ~L~~L~Ls~N~L~~  767 (876)
T 4ecn_A          754 YLSNMDVSYNCFSS  767 (876)
T ss_dssp             TCCEEECCSSCCSS
T ss_pred             CcCEEEeCCCCCCc
Confidence            77777776666655

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.88  E-value=1.2e-22  Score=209.55  Aligned_cols=225  Identities=19%  Similarity=0.203  Sum_probs=177.5

Q ss_pred             CCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCC-CCcccccCcccccEEecCCCCCc-cccccccCCCCC
Q 037494          143 DMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLD-QFPPGLENLFLLKYLQLNIPTLK-CLPLLICTLLNL  220 (394)
Q Consensus       143 ~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~-~lp~~i~~l~~L~~L~l~~~~l~-~lp~~l~~l~~L  220 (394)
                      +++|+.|.+.++....    .++..+.++++|++|++++|.+. .+|..++.+++|++|++++|.+. .+|..++.+++|
T Consensus       393 ~~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L  468 (768)
T 3rgz_A          393 KNTLQELYLQNNGFTG----KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL  468 (768)
T ss_dssp             TCCCCEEECCSSEEEE----ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred             cCCccEEECCCCcccc----ccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCc
Confidence            5567777777766542    33444588889999999998877 67888888899999999988877 678888888999


Q ss_pred             cEEEcc-cCCcc-ccchhhccCccCcEEEeeCCCCCC-CCCCCCCCCCcCceeCccccC--CCcchhcCCCCCCCeEEEe
Q 037494          221 ETLEMP-AGYID-HSPEGIWMMQKLMHLNFDSITLPA-PPKNYSSSLKNLIFISALHPS--SCTPDILSRLPTVQTLRIS  295 (394)
Q Consensus       221 ~~L~l~-~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~-~~p~~l~~l~~L~~L~~~~~~--~~~~~~l~~l~~L~~L~l~  295 (394)
                      ++|+++ | .+. .+|..++.+++|++|+++ +|.+. .+|..++.+++|++|++.+|.  +..+..++.+++|+.|+++
T Consensus       469 ~~L~L~~N-~l~~~~p~~l~~l~~L~~L~L~-~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls  546 (768)
T 3rgz_A          469 ETLILDFN-DLTGEIPSGLSNCTNLNWISLS-NNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN  546 (768)
T ss_dssp             CEEECCSS-CCCSCCCGGGGGCTTCCEEECC-SSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECC
T ss_pred             eEEEecCC-cccCcCCHHHhcCCCCCEEEcc-CCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECC
Confidence            999999 7 554 678888889999999998 88844 778888889999999998888  5677888888999999988


Q ss_pred             ecCCccccchhh--------------------------------------------------------------------
Q 037494          296 GDLSHYHSGVSK--------------------------------------------------------------------  307 (394)
Q Consensus       296 ~~~~~~~~~~~~--------------------------------------------------------------------  307 (394)
                      +|.  ..+.+|.                                                                    
T Consensus       547 ~N~--l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~  624 (768)
T 3rgz_A          547 TNL--FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHT  624 (768)
T ss_dssp             SSE--EESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEEC
T ss_pred             CCc--cCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccC
Confidence            876  3323332                                                                    


Q ss_pred             --hhcCCCCCcEEEecCCCCCC-ccCC-CCCCCCCCceEEEEecccCCCCCcccccCCCCCCeEEEecccccCce
Q 037494          308 --SLCELHKLECLKLVNGSKLS-RMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFGRK  378 (394)
Q Consensus       308 --~l~~~~~L~~L~l~~~~~L~-~L~p-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~  378 (394)
                        .++.+++|+.|++++ +++. .+ | .++. +++|+.|+|++|+++...+..++++++|+.|++++|.+++..
T Consensus       625 ~~~~~~l~~L~~LdLs~-N~l~g~i-p~~l~~-l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~i  696 (768)
T 3rgz_A          625 SPTFDNNGSMMFLDMSY-NMLSGYI-PKEIGS-MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI  696 (768)
T ss_dssp             CCSCSSSBCCCEEECCS-SCCBSCC-CGGGGG-CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECC
T ss_pred             chhhhccccccEEECcC-CcccccC-CHHHhc-cccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcC
Confidence              233456778888887 4454 44 7 8888 899999999999988888888999999999999999887665

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.88  E-value=6.8e-22  Score=183.76  Aligned_cols=238  Identities=18%  Similarity=0.165  Sum_probs=192.8

Q ss_pred             eEEEEEEeCCcchhhccCCCCCccEEEEecCCCccchhcch-hHHhccCCceeEEEcCCCCCCCC-cccccCcccccEEe
Q 037494          124 VKRCFILEDLIEFISLEQSDMYLQSFLNHSSESDHLALIDC-ENFCENFKYLRVLNWGSAVLDQF-PPGLENLFLLKYLQ  201 (394)
Q Consensus       124 ~r~L~l~~~~~~~~~~~~~~~~lr~L~l~~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~  201 (394)
                      ++.+.+.......+|.. -.+.++.|.+.++...     .+ +..|.++++|++|++++|.+..+ |..++.+++|++|+
T Consensus        33 l~~l~~~~~~l~~lp~~-~~~~l~~L~L~~n~i~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (330)
T 1xku_A           33 LRVVQCSDLGLEKVPKD-LPPDTALLDLQNNKIT-----EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY  106 (330)
T ss_dssp             TTEEECTTSCCCSCCCS-CCTTCCEEECCSSCCC-----CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred             CeEEEecCCCccccCcc-CCCCCeEEECCCCcCC-----EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence            44555543344445443 2468999999999876     33 33449999999999999999977 78899999999999


Q ss_pred             cCCCCCccccccccCCCCCcEEEcc-cCCccccch-hhccCccCcEEEeeCCCCCC---CCCCCCCCCCcCceeCccccC
Q 037494          202 LNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPE-GIWMMQKLMHLNFDSITLPA---PPKNYSSSLKNLIFISALHPS  276 (394)
Q Consensus       202 l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~---~~p~~l~~l~~L~~L~~~~~~  276 (394)
                      +++|.++.+|..+.  ++|++|+++ | .+..++. .+..+++|++|+++ +|...   ..+..++.+++|+.|++.++.
T Consensus       107 Ls~n~l~~l~~~~~--~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~~~l~~L~~L~l~~n~  182 (330)
T 1xku_A          107 LSKNQLKELPEKMP--KTLQELRVHEN-EITKVRKSVFNGLNQMIVVELG-TNPLKSSGIENGAFQGMKKLSYIRIADTN  182 (330)
T ss_dssp             CCSSCCSBCCSSCC--TTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECC-SSCCCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred             CCCCcCCccChhhc--ccccEEECCCC-cccccCHhHhcCCccccEEECC-CCcCCccCcChhhccCCCCcCEEECCCCc
Confidence            99999999998775  799999999 8 8888775 58899999999999 88754   445678899999999999888


Q ss_pred             -CCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCccCC-CCCCCCCCceEEEEecccCCCCC
Q 037494          277 -SCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTELMEDP  354 (394)
Q Consensus       277 -~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l~~~~  354 (394)
                       ...+..+.  ++|+.|++++|.  .....+..+..+++|+.|++++ +.+..+.| ++.. +++|+.|++++|++. ..
T Consensus       183 l~~l~~~~~--~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~-l~~L~~L~L~~N~l~-~l  255 (330)
T 1xku_A          183 ITTIPQGLP--PSLTELHLDGNK--ITKVDAASLKGLNNLAKLGLSF-NSISAVDNGSLAN-TPHLRELHLNNNKLV-KV  255 (330)
T ss_dssp             CCSCCSSCC--TTCSEEECTTSC--CCEECTGGGTTCTTCCEEECCS-SCCCEECTTTGGG-STTCCEEECCSSCCS-SC
T ss_pred             cccCCcccc--ccCCEEECCCCc--CCccCHHHhcCCCCCCEEECCC-CcCceeChhhccC-CCCCCEEECCCCcCc-cC
Confidence             55554443  799999999996  5555577899999999999998 66777734 7777 999999999999986 44


Q ss_pred             cccccCCCCCCeEEEecccccCce
Q 037494          355 MPMLERLPRLQVMKLKRNSYFGRK  378 (394)
Q Consensus       355 ~~~l~~l~~L~~L~l~~n~~~~~~  378 (394)
                      +..+..+++|++|++++|.+++..
T Consensus       256 p~~l~~l~~L~~L~l~~N~i~~~~  279 (330)
T 1xku_A          256 PGGLADHKYIQVVYLHNNNISAIG  279 (330)
T ss_dssp             CTTTTTCSSCCEEECCSSCCCCCC
T ss_pred             ChhhccCCCcCEEECCCCcCCccC
Confidence            456889999999999999877543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.87  E-value=3.6e-22  Score=201.68  Aligned_cols=215  Identities=16%  Similarity=0.157  Sum_probs=172.4

Q ss_pred             HhccCCceeEEEcCCCCCC-CCcccccCcccccEEecCCCCCccccccccCCCC-CcEEEcc-cCCccccchhhccCc--
Q 037494          167 FCENFKYLRVLNWGSAVLD-QFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLN-LETLEMP-AGYIDHSPEGIWMMQ--  241 (394)
Q Consensus       167 ~~~~l~~L~~L~l~~~~~~-~lp~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~-L~~L~l~-~~~l~~lp~~i~~l~--  241 (394)
                      .+.++++|++|++++|.+. .+| .++.+++|++|++++|.+..+|..++.+++ |++|+++ | .+..+|..++.+.  
T Consensus       325 ~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N-~l~~lp~~~~~~~l~  402 (636)
T 4eco_A          325 SLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHN-KLKYIPNIFDAKSVS  402 (636)
T ss_dssp             HHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSS-CCSSCCSCCCTTCSS
T ss_pred             hhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCC-cCcccchhhhhcccC
Confidence            4599999999999999999 899 899999999999999999999999999999 9999999 8 8889998777655  


Q ss_pred             cCcEEEeeCCCC-CCCCCCCCC-------CCCcCceeCccccC-CCcchh-cCCCCCCCeEEEeecCCccccchhhhhcC
Q 037494          242 KLMHLNFDSITL-PAPPKNYSS-------SLKNLIFISALHPS-SCTPDI-LSRLPTVQTLRISGDLSHYHSGVSKSLCE  311 (394)
Q Consensus       242 ~L~~L~l~~~~~-~~~~p~~l~-------~l~~L~~L~~~~~~-~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~l~~  311 (394)
                      +|++|+++ +|. ....|..++       .+++|++|++.++. ...+.. +..+++|+.|++++|.  .. .+|..+..
T Consensus       403 ~L~~L~Ls-~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~--l~-~i~~~~~~  478 (636)
T 4eco_A          403 VMSAIDFS-YNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNM--LT-EIPKNSLK  478 (636)
T ss_dssp             CEEEEECC-SSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSC--CS-BCCSSSSE
T ss_pred             ccCEEECc-CCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCC--CC-CcCHHHhc
Confidence            89999999 988 445666777       78899999999988 555544 4568999999999996  33 55543322


Q ss_pred             --------CCCCcEEEecCCCCCCccCC-CCC--CCCCCceEEEEecccCCCCCcccccCCCCCCeEEEec------ccc
Q 037494          312 --------LHKLECLKLVNGSKLSRMVL-SEY--QFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKR------NSY  374 (394)
Q Consensus       312 --------~~~L~~L~l~~~~~L~~L~p-~~~--~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~------n~~  374 (394)
                              +++|+.|++++ +++..+ | .+.  . +++|+.|+|++|++.. .+..+..+++|+.|++++      |.+
T Consensus       479 ~~~~~~~~l~~L~~L~Ls~-N~l~~l-p~~~~~~~-l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l  554 (636)
T 4eco_A          479 DENENFKNTYLLTSIDLRF-NKLTKL-SDDFRATT-LPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRT  554 (636)
T ss_dssp             ETTEECTTGGGCCEEECCS-SCCCBC-CGGGSTTT-CTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBC
T ss_pred             cccccccccCCccEEECcC-CcCCcc-Chhhhhcc-CCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcc
Confidence                    23899999998 778888 8 665  7 9999999999999876 556788999999999965      333


Q ss_pred             cCceeEEeCCCCCcCCccc
Q 037494          375 FGRKLACVGSGGFPELQVL  393 (394)
Q Consensus       375 ~~~~~~~~~~~~fp~L~~L  393 (394)
                      .+.... . ...+++|+.|
T Consensus       555 ~~~~p~-~-l~~l~~L~~L  571 (636)
T 4eco_A          555 LREWPE-G-ITLCPSLTQL  571 (636)
T ss_dssp             CCCCCT-T-GGGCSSCCEE
T ss_pred             cccChH-H-HhcCCCCCEE
Confidence            333210 1 2346677765

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.87  E-value=3.8e-22  Score=185.65  Aligned_cols=237  Identities=16%  Similarity=0.101  Sum_probs=192.6

Q ss_pred             ceEEEEEEeCCcchhhccCCCCCccEEEEecCCCccchhcch-hHHhccCCceeEEEcCCCCCCCC-cccccCcccccEE
Q 037494          123 TVKRCFILEDLIEFISLEQSDMYLQSFLNHSSESDHLALIDC-ENFCENFKYLRVLNWGSAVLDQF-PPGLENLFLLKYL  200 (394)
Q Consensus       123 ~~r~L~l~~~~~~~~~~~~~~~~lr~L~l~~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L  200 (394)
                      .++.+.+..+....+|... .++++.|.+.++...     .+ ++.|.++++|++|++++|.++.+ |..++.+++|++|
T Consensus        34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  107 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDIS-----ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKL  107 (332)
T ss_dssp             ETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCC-----EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEE
T ss_pred             cCCEEECCCCCccccCCCC-CCCCeEEECCCCcCC-----ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEE
Confidence            3556666645555555442 478999999999876     33 43449999999999999999966 7889999999999


Q ss_pred             ecCCCCCccccccccCCCCCcEEEcc-cCCccccch-hhccCccCcEEEeeCCCCCC---CCCCCCCCCCcCceeCcccc
Q 037494          201 QLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPE-GIWMMQKLMHLNFDSITLPA---PPKNYSSSLKNLIFISALHP  275 (394)
Q Consensus       201 ~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~---~~p~~l~~l~~L~~L~~~~~  275 (394)
                      ++++|.+..+|..+.  ++|++|+++ | .+..+|. .+..+++|++|+++ +|...   ..|..++.+ +|+.|++..+
T Consensus       108 ~L~~n~l~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~~~l-~L~~L~l~~n  182 (332)
T 2ft3_A          108 YISKNHLVEIPPNLP--SSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMG-GNPLENSGFEPGAFDGL-KLNYLRISEA  182 (332)
T ss_dssp             ECCSSCCCSCCSSCC--TTCCEEECCSS-CCCCCCSGGGSSCSSCCEEECC-SCCCBGGGSCTTSSCSC-CCSCCBCCSS
T ss_pred             ECCCCcCCccCcccc--ccCCEEECCCC-ccCccCHhHhCCCccCCEEECC-CCccccCCCCcccccCC-ccCEEECcCC
Confidence            999999999998876  899999999 8 8888886 48899999999999 88854   445667777 9999999988


Q ss_pred             C-CCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCccCC-CCCCCCCCceEEEEecccCCCC
Q 037494          276 S-SCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTELMED  353 (394)
Q Consensus       276 ~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l~~~  353 (394)
                      . ...+..+.  ++|+.|++++|.  .....+..+..+++|+.|++++ +.+..+.| ++.. +++|+.|++++|++. .
T Consensus       183 ~l~~l~~~~~--~~L~~L~l~~n~--i~~~~~~~l~~l~~L~~L~L~~-N~l~~~~~~~~~~-l~~L~~L~L~~N~l~-~  255 (332)
T 2ft3_A          183 KLTGIPKDLP--ETLNELHLDHNK--IQAIELEDLLRYSKLYRLGLGH-NQIRMIENGSLSF-LPTLRELHLDNNKLS-R  255 (332)
T ss_dssp             BCSSCCSSSC--SSCSCCBCCSSC--CCCCCTTSSTTCTTCSCCBCCS-SCCCCCCTTGGGG-CTTCCEEECCSSCCC-B
T ss_pred             CCCccCcccc--CCCCEEECCCCc--CCccCHHHhcCCCCCCEEECCC-CcCCcCChhHhhC-CCCCCEEECCCCcCe-e
Confidence            8 55555444  789999999996  5555557888999999999998 67777734 6777 999999999999986 3


Q ss_pred             CcccccCCCCCCeEEEecccccCc
Q 037494          354 PMPMLERLPRLQVMKLKRNSYFGR  377 (394)
Q Consensus       354 ~~~~l~~l~~L~~L~l~~n~~~~~  377 (394)
                      .+..++.+++|++|++++|.++..
T Consensus       256 lp~~l~~l~~L~~L~l~~N~l~~~  279 (332)
T 2ft3_A          256 VPAGLPDLKLLQVVYLHTNNITKV  279 (332)
T ss_dssp             CCTTGGGCTTCCEEECCSSCCCBC
T ss_pred             cChhhhcCccCCEEECCCCCCCcc
Confidence            445688999999999999987654

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.87  E-value=1.6e-21  Score=189.85  Aligned_cols=249  Identities=19%  Similarity=0.165  Sum_probs=153.4

Q ss_pred             CCceEEEEEEeCCcchhhccCCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCcccccCcccccEE
Q 037494          121 LATVKRCFILEDLIEFISLEQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYL  200 (394)
Q Consensus       121 ~~~~r~L~l~~~~~~~~~~~~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L  200 (394)
                      ...++++.+..+....++....+++|+.|.+.++...     .++.+ .++++|++|++++|.+..+++ ++++++|++|
T Consensus        45 l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~-----~~~~~-~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L  117 (466)
T 1o6v_A           45 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLT-----DITPL-KNLTKLVDILMNNNQIADITP-LANLTNLTGL  117 (466)
T ss_dssp             HHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCC-----CCGGG-TTCTTCCEEECCSSCCCCCGG-GTTCTTCCEE
T ss_pred             hccccEEecCCCCCccCcchhhhcCCCEEECCCCccC-----Cchhh-hccccCCEEECCCCccccChh-hcCCCCCCEE
Confidence            3467777777566666665567888888888888775     33344 888888888888888887776 8888888888


Q ss_pred             ecCCCCCccccccccCCCCCcEEEcc-cCCccccchhhccCccCcEEEeeCCCCCCCCCCCCCCCCcCceeCccccCCCc
Q 037494          201 QLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITLPAPPKNYSSSLKNLIFISALHPSSCT  279 (394)
Q Consensus       201 ~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~~  279 (394)
                      ++++|.+..+|. ++++++|++|+++ | .+..+|. ++.+++|++|+++ ++. ..++ .++.+++|+.|++.++....
T Consensus       118 ~L~~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~-~~~-~~~~-~~~~l~~L~~L~l~~n~l~~  191 (466)
T 1o6v_A          118 TLFNNQITDIDP-LKNLTNLNRLELSSN-TISDISA-LSGLTSLQQLSFG-NQV-TDLK-PLANLTTLERLDISSNKVSD  191 (466)
T ss_dssp             ECCSSCCCCCGG-GTTCTTCSEEEEEEE-EECCCGG-GTTCTTCSEEEEE-ESC-CCCG-GGTTCTTCCEEECCSSCCCC
T ss_pred             ECCCCCCCCChH-HcCCCCCCEEECCCC-ccCCChh-hccCCcccEeecC-Ccc-cCch-hhccCCCCCEEECcCCcCCC
Confidence            888888888775 7888888888888 7 6766653 6666666666665 322 2222 25555566666655555222


Q ss_pred             chhcCCCCCCCeEEEeecCCccccchh--------------------hhhcCCCCCcEEEecCCCCCCccCCCCCCCCCC
Q 037494          280 PDILSRLPTVQTLRISGDLSHYHSGVS--------------------KSLCELHKLECLKLVNGSKLSRMVLSEYQFPPS  339 (394)
Q Consensus       280 ~~~l~~l~~L~~L~l~~~~~~~~~~~~--------------------~~l~~~~~L~~L~l~~~~~L~~L~p~~~~~l~~  339 (394)
                      ...+..+++|+.|++++|.  .....+                    ..+..+++|+.|++++ +.+..+ +.+.. +++
T Consensus       192 ~~~l~~l~~L~~L~l~~n~--l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~-n~l~~~-~~~~~-l~~  266 (466)
T 1o6v_A          192 ISVLAKLTNLESLIATNNQ--ISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLAN-NQISNL-APLSG-LTK  266 (466)
T ss_dssp             CGGGGGCTTCSEEECCSSC--CCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCS-SCCCCC-GGGTT-CTT
T ss_pred             ChhhccCCCCCEEEecCCc--ccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCC-Cccccc-hhhhc-CCC
Confidence            2335555555555555553  221111                    1233444444444444 233333 22444 667


Q ss_pred             ceEEEEecccCCCCCcccccCCCCCCeEEEecccccCceeEEeCCCCCcCCccc
Q 037494          340 LIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFGRKLACVGSGGFPELQVL  393 (394)
Q Consensus       340 L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~fp~L~~L  393 (394)
                      |+.|++++|.+...  +.++.+++|+.|++++|.+.+...    ...+++|+.|
T Consensus       267 L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~----~~~l~~L~~L  314 (466)
T 1o6v_A          267 LTELKLGANQISNI--SPLAGLTALTNLELNENQLEDISP----ISNLKNLTYL  314 (466)
T ss_dssp             CSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCSCCGG----GGGCTTCSEE
T ss_pred             CCEEECCCCccCcc--ccccCCCccCeEEcCCCcccCchh----hcCCCCCCEE
Confidence            77777777766432  236677777777777666655332    2345666654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.87  E-value=4.1e-22  Score=183.20  Aligned_cols=215  Identities=21%  Similarity=0.254  Sum_probs=181.0

Q ss_pred             CCceeEEEcCCCCCCCCccc-ccCcccccEEecCCCCCccc---cccccCCCCCcEEEcc-cCCccccchhhccCccCcE
Q 037494          171 FKYLRVLNWGSAVLDQFPPG-LENLFLLKYLQLNIPTLKCL---PLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMH  245 (394)
Q Consensus       171 l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~~~l~~l---p~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~  245 (394)
                      .++|++|++++|.++.+|.. ++++++|++|++++|.+..+   |..+..+++|++|+++ | .+..+|..+..+++|++
T Consensus        27 ~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~l~~~~~~l~~L~~  105 (306)
T 2z66_A           27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEH  105 (306)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC-SEEEEEEEEETCTTCCE
T ss_pred             CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC-ccccChhhcCCCCCCCE
Confidence            36899999999999998865 68999999999999998755   6677789999999999 8 89999988999999999


Q ss_pred             EEeeCCCCCCCCCC--CCCCCCcCceeCccccC--CCcchhcCCCCCCCeEEEeecCCcccc-chhhhhcCCCCCcEEEe
Q 037494          246 LNFDSITLPAPPKN--YSSSLKNLIFISALHPS--SCTPDILSRLPTVQTLRISGDLSHYHS-GVSKSLCELHKLECLKL  320 (394)
Q Consensus       246 L~l~~~~~~~~~p~--~l~~l~~L~~L~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~l~~~~~L~~L~l  320 (394)
                      |+++ +|.+..++.  .++.+++|++|++.++.  ...+..++.+++|+.|++++|.  ..+ ..|..+..+++|+.|++
T Consensus       106 L~l~-~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~~l~~L~~L~L  182 (306)
T 2z66_A          106 LDFQ-HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS--FQENFLPDIFTELRNLTFLDL  182 (306)
T ss_dssp             EECT-TSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCE--EGGGEECSCCTTCTTCCEEEC
T ss_pred             EECC-CCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCc--cccccchhHHhhCcCCCEEEC
Confidence            9999 988666664  68899999999999988  4556678899999999999986  444 46788899999999999


Q ss_pred             cCCCCCCccCC-CCCCCCCCceEEEEecccCCCCCcccccCCCCCCeEEEecccccCceeEEeCCCCCc-CCccc
Q 037494          321 VNGSKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFGRKLACVGSGGFP-ELQVL  393 (394)
Q Consensus       321 ~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~fp-~L~~L  393 (394)
                      ++ +.+..+.| ++.. +++|+.|++++|++...+...+..+++|++|++++|.+.+.....  ...+| +|+.|
T Consensus       183 s~-n~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~~~~~L~~L  253 (306)
T 2z66_A          183 SQ-CQLEQLSPTAFNS-LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE--LQHFPSSLAFL  253 (306)
T ss_dssp             TT-SCCCEECTTTTTT-CTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSS--CCCCCTTCCEE
T ss_pred             CC-CCcCCcCHHHhcC-CCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHH--HHhhhccCCEE
Confidence            98 67777745 8888 999999999999998777667899999999999999887654211  13343 67665

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.87  E-value=3.1e-21  Score=193.92  Aligned_cols=198  Identities=20%  Similarity=0.150  Sum_probs=134.2

Q ss_pred             ceeEEEcCCCCCCCCc-ccccCcccccEEecCCCCCccccccccCCCCCcEEEcc-cCCcccc-chhhccCccCcEEEee
Q 037494          173 YLRVLNWGSAVLDQFP-PGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHS-PEGIWMMQKLMHLNFD  249 (394)
Q Consensus       173 ~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~l-p~~i~~l~~L~~L~l~  249 (394)
                      .|+.|++++|.+..++ ..++.+++|++|++++|.+..+|..++.+++|++|+++ | .+..+ |..+..+++|++|+++
T Consensus       255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~  333 (606)
T 3t6q_A          255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSAN-KFENLCQISASNFPSLTHLSIK  333 (606)
T ss_dssp             EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTC-CCSBGGGGCGGGCTTCSEEECC
T ss_pred             ceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccC-CcCcCchhhhhccCcCCEEECC
Confidence            4555666666655554 33777888888888888888888888888888888888 7 66666 4568888888888888


Q ss_pred             CCCC-CCCCCCC-CCCCCcCceeCccccC-CCc---chhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCC
Q 037494          250 SITL-PAPPKNY-SSSLKNLIFISALHPS-SCT---PDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNG  323 (394)
Q Consensus       250 ~~~~-~~~~p~~-l~~l~~L~~L~~~~~~-~~~---~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~  323 (394)
                       +|. ...+|.. ++.+++|++|++.++. ...   +..++.+++|+.|++++|.  .....+..+..+++|+.|++++ 
T Consensus       334 -~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~-  409 (606)
T 3t6q_A          334 -GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE--PLSLKTEAFKECPQLELLDLAF-  409 (606)
T ss_dssp             -SCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCS--CEEECTTTTTTCTTCSEEECTT-
T ss_pred             -CCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCc--CCcCCHHHhcCCccCCeEECCC-
Confidence             777 3355554 7788888888888777 222   4567888888888888886  5555566777777888888876 


Q ss_pred             CCCCccCC--CCCCCCCCceEEEEecccCCCCCcccccCCCCCCeEEEecccccC
Q 037494          324 SKLSRMVL--SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFG  376 (394)
Q Consensus       324 ~~L~~L~p--~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~  376 (394)
                      +.+....|  ++.. +++|+.|++++|.+....+..++.+++|++|++++|.+.+
T Consensus       410 n~l~~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  463 (606)
T 3t6q_A          410 TRLKVKDAQSPFQN-LHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPK  463 (606)
T ss_dssp             CCEECCTTCCTTTT-CTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGG
T ss_pred             CcCCCcccchhhhC-cccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCc
Confidence            33332212  3444 5556666666655544444445555555555555555443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.87  E-value=2.3e-21  Score=188.10  Aligned_cols=136  Identities=13%  Similarity=0.014  Sum_probs=110.9

Q ss_pred             CcchhhccCCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCC-CC-cccccCcccccEEecCCCCCccc
Q 037494          133 LIEFISLEQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLD-QF-PPGLENLFLLKYLQLNIPTLKCL  210 (394)
Q Consensus       133 ~~~~~~~~~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~-~l-p~~i~~l~~L~~L~l~~~~l~~l  210 (394)
                      ....+|.  -.++++.|.+.++....    ..+..|.++++|++|++++|.+. .+ +..++.+++|++|++++|.+..+
T Consensus        21 ~l~~lp~--l~~~l~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~   94 (455)
T 3v47_A           21 GLHQVPE--LPAHVNYVDLSLNSIAE----LNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQL   94 (455)
T ss_dssp             CCSSCCC--CCTTCCEEECCSSCCCE----ECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEE
T ss_pred             CcccCCC--CCCccCEEEecCCccCc----CChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCcc
Confidence            3344454  34789999999998862    22444599999999999999986 55 56799999999999999999876


Q ss_pred             -cccccCCCCCcEEEcc-cCCccc-cchh--hccCccCcEEEeeCCCCCCCC-CCC-CCCCCcCceeCccccC
Q 037494          211 -PLLICTLLNLETLEMP-AGYIDH-SPEG--IWMMQKLMHLNFDSITLPAPP-KNY-SSSLKNLIFISALHPS  276 (394)
Q Consensus       211 -p~~l~~l~~L~~L~l~-~~~l~~-lp~~--i~~l~~L~~L~l~~~~~~~~~-p~~-l~~l~~L~~L~~~~~~  276 (394)
                       |..++++++|++|+++ | .+.. .|..  ++.+++|++|+++ +|.+..+ |.. ++.+++|++|++.++.
T Consensus        95 ~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~~l~~L~~L~L~~n~  165 (455)
T 3v47_A           95 ETGAFNGLANLEVLTLTQC-NLDGAVLSGNFFKPLTSLEMLVLR-DNNIKKIQPASFFLNMRRFHVLDLTFNK  165 (455)
T ss_dssp             CTTTTTTCTTCCEEECTTS-CCBTHHHHSSTTTTCTTCCEEECC-SSBCCSCCCCGGGGGCTTCCEEECTTCC
T ss_pred             ChhhccCcccCCEEeCCCC-CCCccccCcccccCcccCCEEECC-CCccCccCcccccCCCCcccEEeCCCCc
Confidence             7789999999999999 8 6664 4544  8899999999999 9997766 444 7889999999998876

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.87  E-value=6e-22  Score=199.18  Aligned_cols=239  Identities=17%  Similarity=0.162  Sum_probs=106.1

Q ss_pred             CceEEEEEEeCCcchhhccCCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCC-CCcccccCcccccEE
Q 037494          122 ATVKRCFILEDLIEFISLEQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLD-QFPPGLENLFLLKYL  200 (394)
Q Consensus       122 ~~~r~L~l~~~~~~~~~~~~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~-~lp~~i~~l~~L~~L  200 (394)
                      .+++.+.+..+....++....+++|+.|.+.++...     .++.+  .+++|++|++++|... .+  .++.+++|++|
T Consensus       285 ~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~-----~lp~~--~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L  355 (606)
T 3vq2_A          285 ANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLK-----QFPTL--DLPFLKSLTLTMNKGSISF--KKVALPSLSYL  355 (606)
T ss_dssp             TTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCS-----SCCCC--CCSSCCEEEEESCSSCEEC--CCCCCTTCCEE
T ss_pred             CCCCEEEecCccchhhhhccccccCCEEEcccccCc-----ccccC--CCCccceeeccCCcCccch--hhccCCCCCEE
Confidence            344555555444444443344555555555555442     22222  4444444444444211 11  23344444444


Q ss_pred             ecCCCCCccc---cccccCCCCCcEEEcc-cCCccccchhhccCccCcEEEeeCCCCCCCCC--CCCCCCCcCceeCccc
Q 037494          201 QLNIPTLKCL---PLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITLPAPPK--NYSSSLKNLIFISALH  274 (394)
Q Consensus       201 ~l~~~~l~~l---p~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p--~~l~~l~~L~~L~~~~  274 (394)
                      ++++|.+..+   |..++.+++|++|+++ | .+..+|..+..+++|++|+++ +|.....+  ..++.+++|++|++.+
T Consensus       356 ~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~~l~~L~~L~l~~  433 (606)
T 3vq2_A          356 DLSRNALSFSGCCSYSDLGTNSLRHLDLSFN-GAIIMSANFMGLEELQHLDFQ-HSTLKRVTEFSAFLSLEKLLYLDISY  433 (606)
T ss_dssp             ECCSSCEEEEEECCHHHHCCSCCCEEECCSC-SEEEECCCCTTCTTCCEEECT-TSEEESTTTTTTTTTCTTCCEEECTT
T ss_pred             ECcCCccCCCcchhhhhccCCcccEeECCCC-ccccchhhccCCCCCCeeECC-CCccCCccChhhhhccccCCEEECcC
Confidence            4444444433   3444444455555554 4 444444444444555555554 44422222  2344444555554444


Q ss_pred             cC--CCcchhcCCCCCCCeEEEeecCCcccc-chhhhhcCCCCCcEEEecCCCCCCccCC-CCCCCCCCceEEEEecccC
Q 037494          275 PS--SCTPDILSRLPTVQTLRISGDLSHYHS-GVSKSLCELHKLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTEL  350 (394)
Q Consensus       275 ~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l  350 (394)
                      +.  ...+..++.+++|+.|++++|.  ..+ ..|..++.+++|+.|++++ +.+..+.| ++.. +++|+.|++++|++
T Consensus       434 n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~-l~~L~~L~Ls~N~l  509 (606)
T 3vq2_A          434 TNTKIDFDGIFLGLTSLNTLKMAGNS--FKDNTLSNVFANTTNLTFLDLSK-CQLEQISWGVFDT-LHRLQLLNMSHNNL  509 (606)
T ss_dssp             SCCEECCTTTTTTCTTCCEEECTTCE--EGGGEECSCCTTCTTCCEEECTT-SCCCEECTTTTTT-CTTCCEEECCSSCC
T ss_pred             CCCCccchhhhcCCCCCCEEECCCCc--CCCcchHHhhccCCCCCEEECCC-CcCCccChhhhcc-cccCCEEECCCCcC
Confidence            44  2233344444455555554443  222 1334444445555555544 23333312 4444 45555555555544


Q ss_pred             CCCCcccccCCCCCCeEEEeccccc
Q 037494          351 MEDPMPMLERLPRLQVMKLKRNSYF  375 (394)
Q Consensus       351 ~~~~~~~l~~l~~L~~L~l~~n~~~  375 (394)
                      ....+..++.+++|+.|++++|.++
T Consensus       510 ~~~~~~~~~~l~~L~~L~l~~N~l~  534 (606)
T 3vq2_A          510 LFLDSSHYNQLYSLSTLDCSFNRIE  534 (606)
T ss_dssp             SCEEGGGTTTCTTCCEEECTTSCCC
T ss_pred             CCcCHHHccCCCcCCEEECCCCcCc
Confidence            4433344444555555555444443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.86  E-value=1.2e-21  Score=186.43  Aligned_cols=148  Identities=13%  Similarity=0.141  Sum_probs=119.9

Q ss_pred             CCCCCccEEEEecCCCccchhcch-hHHhccCCceeEEEcCCCCCCCCc-ccccCcccccEEecCCCCCccccc-cccCC
Q 037494          141 QSDMYLQSFLNHSSESDHLALIDC-ENFCENFKYLRVLNWGSAVLDQFP-PGLENLFLLKYLQLNIPTLKCLPL-LICTL  217 (394)
Q Consensus       141 ~~~~~lr~L~l~~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~l~~lp~-~l~~l  217 (394)
                      ..+++++.+.+.++...     .+ +.+|..+++|++|++++|.++.++ ..++.+++|++|++++|.+..+|+ .++++
T Consensus        42 ~~l~~l~~l~l~~~~l~-----~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  116 (390)
T 3o6n_A           42 ITLNNQKIVTFKNSTMR-----KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV  116 (390)
T ss_dssp             GGGCCCSEEEEESCEES-----EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             cccCCceEEEecCCchh-----hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCC
Confidence            45789999999998775     34 455699999999999999999776 589999999999999999998765 47899


Q ss_pred             CCCcEEEcc-cCCccccchh-hccCccCcEEEeeCCCCCCCCCC-CCCCCCcCceeCccccC-CCcchhcCCCCCCCeEE
Q 037494          218 LNLETLEMP-AGYIDHSPEG-IWMMQKLMHLNFDSITLPAPPKN-YSSSLKNLIFISALHPS-SCTPDILSRLPTVQTLR  293 (394)
Q Consensus       218 ~~L~~L~l~-~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~  293 (394)
                      ++|++|+++ | .+..+|.. ++.+++|++|+++ +|.+..+++ .++.+++|++|++.++. ...  .++.+++|+.|+
T Consensus       117 ~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~l~~L~~L~  192 (390)
T 3o6n_A          117 PLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMS-NNNLERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHAN  192 (390)
T ss_dssp             TTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECC-SSCCCBCCTTTTSSCTTCCEEECCSSCCSBC--CGGGCTTCSEEE
T ss_pred             CCCCEEECCCC-ccCcCCHHHhcCCCCCcEEECC-CCccCccChhhccCCCCCCEEECCCCcCCcc--ccccccccceee
Confidence            999999999 8 89999987 4889999999999 998766654 58999999999999887 221  133344444444


Q ss_pred             Eeec
Q 037494          294 ISGD  297 (394)
Q Consensus       294 l~~~  297 (394)
                      ++++
T Consensus       193 l~~n  196 (390)
T 3o6n_A          193 VSYN  196 (390)
T ss_dssp             CCSS
T ss_pred             cccc
Confidence            4443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.86  E-value=1.3e-21  Score=202.11  Aligned_cols=125  Identities=13%  Similarity=0.167  Sum_probs=74.4

Q ss_pred             CCceEEEEEEeCC-cch--hhcc--------CCCCCccEEEEecCCCccchhcchhH--HhccCCceeEEEcCCCCCCCC
Q 037494          121 LATVKRCFILEDL-IEF--ISLE--------QSDMYLQSFLNHSSESDHLALIDCEN--FCENFKYLRVLNWGSAVLDQF  187 (394)
Q Consensus       121 ~~~~r~L~l~~~~-~~~--~~~~--------~~~~~lr~L~l~~~~~~~~~~~~l~~--~~~~l~~L~~L~l~~~~~~~l  187 (394)
                      ..+++.|.+..+. ...  +|..        ..+++|+.|.+.++...     .+|.  .+.++++|++|++++|.+..+
T Consensus       514 L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-----~ip~~~~l~~L~~L~~L~Ls~N~l~~l  588 (876)
T 4ecn_A          514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-----EFPASASLQKMVKLGLLDCVHNKVRHL  588 (876)
T ss_dssp             CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-----BCCCHHHHTTCTTCCEEECTTSCCCBC
T ss_pred             CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-----ccCChhhhhcCCCCCEEECCCCCcccc
Confidence            4466666666443 332  3321        23446777777666654     3433  336667777777777766666


Q ss_pred             cccccCcccccEEecCCCCCccccccccCCCC-CcEEEcc-cCCccccchhhccCcc--CcEEEeeCCCC
Q 037494          188 PPGLENLFLLKYLQLNIPTLKCLPLLICTLLN-LETLEMP-AGYIDHSPEGIWMMQK--LMHLNFDSITL  253 (394)
Q Consensus       188 p~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~-L~~L~l~-~~~l~~lp~~i~~l~~--L~~L~l~~~~~  253 (394)
                      | .++.+++|+.|++++|.+..+|..++++++ |++|+++ | .+..+|..+..+..  |+.|+++ +|.
T Consensus       589 p-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N-~L~~lp~~~~~~~~~~L~~L~Ls-~N~  655 (876)
T 4ecn_A          589 E-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHN-KLKYIPNIFNAKSVYVMGSVDFS-YNK  655 (876)
T ss_dssp             C-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSS-CCCSCCSCCCTTCSSCEEEEECC-SSC
T ss_pred             h-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCC-CCCcCchhhhccccCCCCEEECc-CCc
Confidence            6 666666777777766666666666666666 6666666 6 55566655444432  5555555 554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.86  E-value=2.9e-21  Score=188.04  Aligned_cols=250  Identities=18%  Similarity=0.157  Sum_probs=145.6

Q ss_pred             CCceEEEEEEeCCcchhhccCCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCcccccCcccccEE
Q 037494          121 LATVKRCFILEDLIEFISLEQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYL  200 (394)
Q Consensus       121 ~~~~r~L~l~~~~~~~~~~~~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L  200 (394)
                      ...+++|.+..+....++....+++|+.|.+.++...     .++.+ .++++|++|++++|.+..++. ++.+++|++|
T Consensus        67 l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~-----~~~~~-~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L  139 (466)
T 1o6v_A           67 LNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIA-----DITPL-ANLTNLTGLTLFNNQITDIDP-LKNLTNLNRL  139 (466)
T ss_dssp             CTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCC-----CCGGG-TTCTTCCEEECCSSCCCCCGG-GTTCTTCSEE
T ss_pred             hcCCCEEECCCCccCCchhhhccccCCEEECCCCccc-----cChhh-cCCCCCCEEECCCCCCCCChH-HcCCCCCCEE
Confidence            5567777777666666555667777888887777665     23333 777777777777777776655 6777777777


Q ss_pred             ecCCCCCccccc--------------------cccCCCCCcEEEcc-cCCccccchhhccCccCcEEEeeCCCCCCCCCC
Q 037494          201 QLNIPTLKCLPL--------------------LICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITLPAPPKN  259 (394)
Q Consensus       201 ~l~~~~l~~lp~--------------------~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~  259 (394)
                      ++++|.+..+|.                    .++++++|++|+++ | .+..++ .+..+++|++|+++ +|.....++
T Consensus       140 ~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~-~n~l~~~~~  216 (466)
T 1o6v_A          140 ELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSN-KVSDIS-VLAKLTNLESLIAT-NNQISDITP  216 (466)
T ss_dssp             EEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECC-SSCCCCCGG
T ss_pred             ECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCC-cCCCCh-hhccCCCCCEEEec-CCccccccc
Confidence            777766554431                    24455666667776 6 555554 36666677777776 666544443


Q ss_pred             CCCCCCcCceeCccccCCCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCC----------------
Q 037494          260 YSSSLKNLIFISALHPSSCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNG----------------  323 (394)
Q Consensus       260 ~l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~----------------  323 (394)
                       ++.+++|++|++.++.......+..+++|+.|++++|.  ... .+. +..+++|+.|+++++                
T Consensus       217 -~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~--l~~-~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~  291 (466)
T 1o6v_A          217 -LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ--ISN-LAP-LSGLTKLTELKLGANQISNISPLAGLTALTN  291 (466)
T ss_dssp             -GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC--CCC-CGG-GTTCTTCSEEECCSSCCCCCGGGTTCTTCSE
T ss_pred             -ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCc--ccc-chh-hhcCCCCCEEECCCCccCccccccCCCccCe
Confidence             55566666666666552223445556666666666654  221 121 455555666665551                


Q ss_pred             -----CCCCccCCCCCCCCCCceEEEEecccCCCCCcccccCCCCCCeEEEecccccCceeEEeCCCCCcCCccc
Q 037494          324 -----SKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFGRKLACVGSGGFPELQVL  393 (394)
Q Consensus       324 -----~~L~~L~p~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~fp~L~~L  393 (394)
                           +.+..+ |.+.. +++|+.|++++|++....  .++.+++|+.|++++|.+.+..   . ...+++|+.|
T Consensus       292 L~L~~n~l~~~-~~~~~-l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~l~~n~l~~~~---~-l~~l~~L~~L  358 (466)
T 1o6v_A          292 LELNENQLEDI-SPISN-LKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFYNNKVSDVS---S-LANLTNINWL  358 (466)
T ss_dssp             EECCSSCCSCC-GGGGG-CTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCCCG---G-GTTCTTCCEE
T ss_pred             EEcCCCcccCc-hhhcC-CCCCCEEECcCCcCCCch--hhccCccCCEeECCCCccCCch---h-hccCCCCCEE
Confidence                 223222 22333 556666666666653322  2556666666666666555432   1 2345555554

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.86  E-value=6.7e-21  Score=184.66  Aligned_cols=239  Identities=15%  Similarity=0.102  Sum_probs=167.9

Q ss_pred             CCceEEEEEEeCCcchhhccCCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCcccccCcccccEE
Q 037494          121 LATVKRCFILEDLIEFISLEQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYL  200 (394)
Q Consensus       121 ~~~~r~L~l~~~~~~~~~~~~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L  200 (394)
                      ...+++|.+..+....++....+++|+.|.+.++....     ++ + ..+++|++|++++|.++.++  ++.+++|++|
T Consensus        41 l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~-----~~-~-~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L  111 (457)
T 3bz5_A           41 LATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITT-----LD-L-SQNTNLTYLACDSNKLTNLD--VTPLTKLTYL  111 (457)
T ss_dssp             HTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSC-----CC-C-TTCTTCSEEECCSSCCSCCC--CTTCTTCCEE
T ss_pred             cCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCe-----Ec-c-ccCCCCCEEECcCCCCceee--cCCCCcCCEE
Confidence            45677888776666666655677888888888887763     22 3 77888888888888887764  7788888888


Q ss_pred             ecCCCCCccccccccCCCCCcEEEcc-cCCccccchhhccCccCcEEEeeCCCC-CCCCCCCCCCCCcCceeCccccC-C
Q 037494          201 QLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITL-PAPPKNYSSSLKNLIFISALHPS-S  277 (394)
Q Consensus       201 ~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~-~~~~p~~l~~l~~L~~L~~~~~~-~  277 (394)
                      ++++|.+..+|  ++.+++|++|+++ | .+..+|  ++.+++|++|+++ +|. ...+  .++.+++|+.|++..+. .
T Consensus       112 ~L~~N~l~~l~--~~~l~~L~~L~l~~N-~l~~l~--l~~l~~L~~L~l~-~n~~~~~~--~~~~l~~L~~L~ls~n~l~  183 (457)
T 3bz5_A          112 NCDTNKLTKLD--VSQNPLLTYLNCARN-TLTEID--VSHNTQLTELDCH-LNKKITKL--DVTPQTQLTTLDCSFNKIT  183 (457)
T ss_dssp             ECCSSCCSCCC--CTTCTTCCEEECTTS-CCSCCC--CTTCTTCCEEECT-TCSCCCCC--CCTTCTTCCEEECCSSCCC
T ss_pred             ECCCCcCCeec--CCCCCcCCEEECCCC-ccceec--cccCCcCCEEECC-CCCccccc--ccccCCcCCEEECCCCccc
Confidence            88888887775  7788888888888 7 777764  6778888888888 774 4444  46778888888888777 3


Q ss_pred             CcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCccCCCCCCCCCCceEEEEecccCCCCCccc
Q 037494          278 CTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPM  357 (394)
Q Consensus       278 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p~~~~~l~~L~~L~L~~~~l~~~~~~~  357 (394)
                      ..+  ++.+++|+.|++++|.  .. .+  .++.+++|+.|++++ +++..+ | +.. +++|+.|++++|++...++  
T Consensus       184 ~l~--l~~l~~L~~L~l~~N~--l~-~~--~l~~l~~L~~L~Ls~-N~l~~i-p-~~~-l~~L~~L~l~~N~l~~~~~--  250 (457)
T 3bz5_A          184 ELD--VSQNKLLNRLNCDTNN--IT-KL--DLNQNIQLTFLDCSS-NKLTEI-D-VTP-LTQLTYFDCSVNPLTELDV--  250 (457)
T ss_dssp             CCC--CTTCTTCCEEECCSSC--CS-CC--CCTTCTTCSEEECCS-SCCSCC-C-CTT-CTTCSEEECCSSCCSCCCC--
T ss_pred             eec--cccCCCCCEEECcCCc--CC-ee--ccccCCCCCEEECcC-Cccccc-C-ccc-cCCCCEEEeeCCcCCCcCH--
Confidence            332  7778888888888875  22 22  367778888888887 667777 6 556 7888888888888766543  


Q ss_pred             ccCCCCCCeEEE----------ecccccCceeEEeCCCCCcCCcccC
Q 037494          358 LERLPRLQVMKL----------KRNSYFGRKLACVGSGGFPELQVLT  394 (394)
Q Consensus       358 l~~l~~L~~L~l----------~~n~~~~~~~~~~~~~~fp~L~~L~  394 (394)
                       +.+++|+.|++          ++|...+..   . .+.+++|+.|+
T Consensus       251 -~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~---~-~~~l~~L~~L~  292 (457)
T 3bz5_A          251 -STLSKLTTLHCIQTDLLEIDLTHNTQLIYF---Q-AEGCRKIKELD  292 (457)
T ss_dssp             -TTCTTCCEEECTTCCCSCCCCTTCTTCCEE---E-CTTCTTCCCCC
T ss_pred             -HHCCCCCEEeccCCCCCEEECCCCccCCcc---c-ccccccCCEEE
Confidence             34454544444          333333222   2 34677787764

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.86  E-value=1.4e-21  Score=196.45  Aligned_cols=245  Identities=18%  Similarity=0.177  Sum_probs=148.0

Q ss_pred             CceEEEEEEeCCcchhhcc-CCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCC-CCc-ccccCccccc
Q 037494          122 ATVKRCFILEDLIEFISLE-QSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLD-QFP-PGLENLFLLK  198 (394)
Q Consensus       122 ~~~r~L~l~~~~~~~~~~~-~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~-~lp-~~i~~l~~L~  198 (394)
                      .+++.|.+..+....+|.. ..+++|+.|.+.++....    ..+..+..+++|++|++++|.+. .+| ..++.+++|+
T Consensus       278 ~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~  353 (606)
T 3t6q_A          278 SGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFEN----LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLR  353 (606)
T ss_dssp             TTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSB----GGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCC
T ss_pred             cCCCEEeccCCccCCCChhhcccccCCEEECccCCcCc----CchhhhhccCcCCEEECCCCCcccccchhhhhccCcCC
Confidence            3455555554444444333 445555566555555441    11223356666666666666554 443 2356666666


Q ss_pred             EEecCCCCCccc---cccccCCCCCcEEEcc-cCCcccc-chhhccCccCcEEEeeCCCCCCCC-CC-CCCCCCcCceeC
Q 037494          199 YLQLNIPTLKCL---PLLICTLLNLETLEMP-AGYIDHS-PEGIWMMQKLMHLNFDSITLPAPP-KN-YSSSLKNLIFIS  271 (394)
Q Consensus       199 ~L~l~~~~l~~l---p~~l~~l~~L~~L~l~-~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~-p~-~l~~l~~L~~L~  271 (394)
                      +|++++|.+...   |..++.+++|++|+++ | .+..+ |..+..+++|++|+++ +|..... |+ .++.+++|++|+
T Consensus       354 ~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~~l~~L~~L~  431 (606)
T 3t6q_A          354 ELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN-EPLSLKTEAFKECPQLELLDLA-FTRLKVKDAQSPFQNLHLLKVLN  431 (606)
T ss_dssp             EEECCSSCCCEEEESTTTTTTCTTCCEEECCSC-SCEEECTTTTTTCTTCSEEECT-TCCEECCTTCCTTTTCTTCCEEE
T ss_pred             EEECCCCccccccCcchhcccCCCCCEEECCCC-cCCcCCHHHhcCCccCCeEECC-CCcCCCcccchhhhCcccCCEEE
Confidence            666666666544   4456666677777776 6 44443 3456666777777776 6663322 22 266677777777


Q ss_pred             ccccC--CCcchhcCCCCCCCeEEEeecCCcccc---chhhhhcCCCCCcEEEecCCCCCCccCC-CCCCCCCCceEEEE
Q 037494          272 ALHPS--SCTPDILSRLPTVQTLRISGDLSHYHS---GVSKSLCELHKLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSL  345 (394)
Q Consensus       272 ~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~---~~~~~l~~~~~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L  345 (394)
                      +.++.  ...+..++.+++|+.|++++|.  ..+   ..+..+..+++|+.|++++ +.+..+.| ++.. +++|+.|+|
T Consensus       432 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~-l~~L~~L~L  507 (606)
T 3t6q_A          432 LSHSLLDISSEQLFDGLPALQHLNLQGNH--FPKGNIQKTNSLQTLGRLEILVLSF-CDLSSIDQHAFTS-LKMMNHVDL  507 (606)
T ss_dssp             CTTCCCBTTCTTTTTTCTTCCEEECTTCB--CGGGEECSSCGGGGCTTCCEEECTT-SCCCEECTTTTTT-CTTCCEEEC
T ss_pred             CCCCccCCcCHHHHhCCCCCCEEECCCCC--CCccccccchhhccCCCccEEECCC-CccCccChhhhcc-ccCCCEEEC
Confidence            76666  3345556667777777777765  322   1224566677777777776 45555534 6777 788888888


Q ss_pred             ecccCCCCCcccccCCCCCCeEEEecccccCc
Q 037494          346 SNTELMEDPMPMLERLPRLQVMKLKRNSYFGR  377 (394)
Q Consensus       346 ~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~  377 (394)
                      ++|++....+..++++++| +|++++|.+++.
T Consensus       508 s~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~  538 (606)
T 3t6q_A          508 SHNRLTSSSIEALSHLKGI-YLNLASNHISII  538 (606)
T ss_dssp             CSSCCCGGGGGGGTTCCSC-EEECCSSCCCCC
T ss_pred             CCCccCcCChhHhCccccc-EEECcCCccccc
Confidence            8888776666777788888 888877777654

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.86  E-value=2.5e-21  Score=191.12  Aligned_cols=124  Identities=11%  Similarity=0.019  Sum_probs=85.3

Q ss_pred             CCceEEEEEEeCCcchhhc--cCCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCcccccCccccc
Q 037494          121 LATVKRCFILEDLIEFISL--EQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLK  198 (394)
Q Consensus       121 ~~~~r~L~l~~~~~~~~~~--~~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~  198 (394)
                      +..+++|.+..+....++.  ...+++|++|.+.++....    ..++.|.++++|++|++++|.++.+|..  .+++|+
T Consensus        20 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~   93 (520)
T 2z7x_B           20 SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQY----LDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLK   93 (520)
T ss_dssp             CTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCE----EEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCS
T ss_pred             cccccEEECCCCcccccChhhccccccccEEecCCCccCC----cChHHhhcccCCCEEecCCCceeecCcc--ccCCcc
Confidence            3567777777665555542  2667778888877777652    1144447778888888888877777765  677788


Q ss_pred             EEecCCCCCcc--ccccccCCCCCcEEEcc-cCCccccchhhccCccC--cEEEeeCCCCC
Q 037494          199 YLQLNIPTLKC--LPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKL--MHLNFDSITLP  254 (394)
Q Consensus       199 ~L~l~~~~l~~--lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L--~~L~l~~~~~~  254 (394)
                      +|++++|.+..  +|..++++++|++|+++ | .+..  ..+..+++|  ++|+++ +|..
T Consensus        94 ~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n-~l~~--~~~~~l~~L~L~~L~l~-~n~l  150 (520)
T 2z7x_B           94 HLDLSFNAFDALPICKEFGNMSQLKFLGLSTT-HLEK--SSVLPIAHLNISKVLLV-LGET  150 (520)
T ss_dssp             EEECCSSCCSSCCCCGGGGGCTTCCEEEEEES-SCCG--GGGGGGTTSCEEEEEEE-ECTT
T ss_pred             EEeccCCccccccchhhhccCCcceEEEecCc-ccch--hhccccccceeeEEEee-cccc
Confidence            88888877764  45677778888888887 6 5554  346666777  888877 6654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.86  E-value=1.3e-21  Score=183.54  Aligned_cols=221  Identities=19%  Similarity=0.132  Sum_probs=139.9

Q ss_pred             CCccEEEEecCCCccchhcch-hHHhccCCceeEEEcCCCCCCCC-cccccCcccccEEecCCCCCcccccc-ccCCCCC
Q 037494          144 MYLQSFLNHSSESDHLALIDC-ENFCENFKYLRVLNWGSAVLDQF-PPGLENLFLLKYLQLNIPTLKCLPLL-ICTLLNL  220 (394)
Q Consensus       144 ~~lr~L~l~~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~l~~lp~~-l~~l~~L  220 (394)
                      ++++.|.+.++...     .+ +..|.++++|++|++++|.++.+ |..++++++|++|++++|.++.+|.. ++++++|
T Consensus        52 ~~L~~L~l~~n~i~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  126 (353)
T 2z80_A           52 EAVKSLDLSNNRIT-----YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSL  126 (353)
T ss_dssp             TTCCEEECTTSCCC-----EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTC
T ss_pred             ccCcEEECCCCcCc-----ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccC
Confidence            46677776666654     22 22236667777777777766654 34566677777777777777666655 5667777


Q ss_pred             cEEEcc-cCCccccch--hhccCccCcEEEeeCCCC-CCCCC-CCCCCCCcCceeCccccC--CCcchhcCCCCCCCeEE
Q 037494          221 ETLEMP-AGYIDHSPE--GIWMMQKLMHLNFDSITL-PAPPK-NYSSSLKNLIFISALHPS--SCTPDILSRLPTVQTLR  293 (394)
Q Consensus       221 ~~L~l~-~~~l~~lp~--~i~~l~~L~~L~l~~~~~-~~~~p-~~l~~l~~L~~L~~~~~~--~~~~~~l~~l~~L~~L~  293 (394)
                      ++|+++ | .+..+|.  .+..+++|++|+++ +|. ...++ ..++.+++|++|++.++.  ...+..++.+++|+.|+
T Consensus       127 ~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~-~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  204 (353)
T 2z80_A          127 TFLNLLGN-PYKTLGETSLFSHLTKLQILRVG-NMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLI  204 (353)
T ss_dssp             SEEECTTC-CCSSSCSSCSCTTCTTCCEEEEE-ESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEE
T ss_pred             CEEECCCC-CCcccCchhhhccCCCCcEEECC-CCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeec
Confidence            777777 6 6666665  46667777777776 653 44443 346666777777766665  23345666666777777


Q ss_pred             EeecCCccccchhhh-hcCCCCCcEEEecCCCCCCccC-------------------------------C-CCCCCCCCc
Q 037494          294 ISGDLSHYHSGVSKS-LCELHKLECLKLVNGSKLSRMV-------------------------------L-SEYQFPPSL  340 (394)
Q Consensus       294 l~~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~L~~L~-------------------------------p-~~~~~l~~L  340 (394)
                      ++++.   ...++.. +..+++|+.|++++ +.+..+.                               | ++.. +++|
T Consensus       205 l~~n~---l~~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~-l~~L  279 (353)
T 2z80_A          205 LHMKQ---HILLLEIFVDVTSSVECLELRD-TDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQ-ISGL  279 (353)
T ss_dssp             EECSC---STTHHHHHHHHTTTEEEEEEES-CBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHT-CTTC
T ss_pred             CCCCc---cccchhhhhhhcccccEEECCC-CccccccccccccccccchhhccccccccccCcchhhhHHHHhc-ccCC
Confidence            76664   2333332 33466677777666 2222210                               4 4556 7889


Q ss_pred             eEEEEecccCCCCCcccccCCCCCCeEEEecccccC
Q 037494          341 IQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFG  376 (394)
Q Consensus       341 ~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~  376 (394)
                      +.|++++|+++..+...++.+++|++|++++|.+.+
T Consensus       280 ~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~  315 (353)
T 2z80_A          280 LELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  315 (353)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccC
Confidence            999999998875544446888899999998887654

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.86  E-value=2.9e-21  Score=190.65  Aligned_cols=121  Identities=14%  Similarity=0.034  Sum_probs=85.2

Q ss_pred             EEEEEeCCcchhhccCCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCC-cccccCcccccEEecCC
Q 037494          126 RCFILEDLIEFISLEQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQF-PPGLENLFLLKYLQLNI  204 (394)
Q Consensus       126 ~L~l~~~~~~~~~~~~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~  204 (394)
                      ++.+..+....+|.... ++++.|.+.++....    ..++.|..+++|++|++++|.++.+ |..++++++|++|++++
T Consensus         4 ~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~   78 (520)
T 2z7x_B            4 LVDRSKNGLIHVPKDLS-QKTTILNISQNYISE----LWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH   78 (520)
T ss_dssp             EEECTTSCCSSCCCSCC-TTCSEEECCSSCCCC----CCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred             eEecCCCCccccccccc-ccccEEECCCCcccc----cChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence            34444444455554432 778888888877652    1133447888888888888887765 56788888888888888


Q ss_pred             CCCccccccccCCCCCcEEEcc-cCCccc--cchhhccCccCcEEEeeCCCCCC
Q 037494          205 PTLKCLPLLICTLLNLETLEMP-AGYIDH--SPEGIWMMQKLMHLNFDSITLPA  255 (394)
Q Consensus       205 ~~l~~lp~~l~~l~~L~~L~l~-~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~  255 (394)
                      |.++.+|..  .+++|++|+++ | .+..  +|..++.+++|++|+++ +|.+.
T Consensus        79 N~l~~lp~~--~l~~L~~L~L~~N-~l~~~~~p~~~~~l~~L~~L~L~-~n~l~  128 (520)
T 2z7x_B           79 NKLVKISCH--PTVNLKHLDLSFN-AFDALPICKEFGNMSQLKFLGLS-TTHLE  128 (520)
T ss_dssp             SCCCEEECC--CCCCCSEEECCSS-CCSSCCCCGGGGGCTTCCEEEEE-ESSCC
T ss_pred             CceeecCcc--ccCCccEEeccCC-ccccccchhhhccCCcceEEEec-Ccccc
Confidence            888888766  78888888888 7 6654  46778888888888888 76643

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.85  E-value=1.1e-20  Score=171.93  Aligned_cols=199  Identities=19%  Similarity=0.213  Sum_probs=113.9

Q ss_pred             CceeEEEcCCCCCCCCc-ccccCcccccEEecCCCCCccc-cccccCCCCCcEEEcc-cCCcccc-chhhccCccCcEEE
Q 037494          172 KYLRVLNWGSAVLDQFP-PGLENLFLLKYLQLNIPTLKCL-PLLICTLLNLETLEMP-AGYIDHS-PEGIWMMQKLMHLN  247 (394)
Q Consensus       172 ~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~l~-~~~l~~l-p~~i~~l~~L~~L~  247 (394)
                      ++|++|+++++.+..++ ..+..+++|++|++++|.+..+ |..++.+++|++|+++ |..+..+ |..+..+++|++|+
T Consensus        32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~  111 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (285)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence            45566666666665544 3455666666666666665554 4455566666666666 5225555 34455666666666


Q ss_pred             eeCCCCCCCC-CCCCCCCCcCceeCccccC-CCcc-hhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCC
Q 037494          248 FDSITLPAPP-KNYSSSLKNLIFISALHPS-SCTP-DILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGS  324 (394)
Q Consensus       248 l~~~~~~~~~-p~~l~~l~~L~~L~~~~~~-~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~  324 (394)
                      ++ +|.+..+ |..++.+++|++|++.++. ...+ ..++.+++|+.|++++|.  .....+..+..+++|+.|++++ +
T Consensus       112 l~-~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~-n  187 (285)
T 1ozn_A          112 LD-RCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR--ISSVPERAFRGLHSLDRLLLHQ-N  187 (285)
T ss_dssp             CT-TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CCEECTTTTTTCTTCCEEECCS-S
T ss_pred             CC-CCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc--ccccCHHHhcCccccCEEECCC-C
Confidence            66 5554444 3335556666666666555 2222 335566666666666664  2222223455666666666666 4


Q ss_pred             CCCccCC-CCCCCCCCceEEEEecccCCCCCcccccCCCCCCeEEEeccccc
Q 037494          325 KLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYF  375 (394)
Q Consensus       325 ~L~~L~p-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~  375 (394)
                      .+..+.| ++.. +++|+.|++++|++...+...+..+++|+.|++++|.+.
T Consensus       188 ~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          188 RVAHVHPHAFRD-LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             CCCEECTTTTTT-CTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             cccccCHhHccC-cccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence            4544434 5666 667777777777666555555666777777777666543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.85  E-value=5e-21  Score=190.78  Aligned_cols=78  Identities=19%  Similarity=0.209  Sum_probs=37.0

Q ss_pred             ccCCceeEEEcCCCCCCCC-cccccCcccccEEecCCCCCccccccccCCCCCcEEEcc-cCCccccc--hhhccCccCc
Q 037494          169 ENFKYLRVLNWGSAVLDQF-PPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSP--EGIWMMQKLM  244 (394)
Q Consensus       169 ~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp--~~i~~l~~L~  244 (394)
                      .++++|++|++++|.++.+ |..++.+++|++|++++|.++.+|..  .+++|++|+++ | .+..+|  ..++++++|+
T Consensus        73 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N-~l~~l~~p~~~~~l~~L~  149 (562)
T 3a79_B           73 SFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFN-DFDVLPVCKEFGNLTKLT  149 (562)
T ss_dssp             TTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECCSS-CCSBCCCCGGGGGCTTCC
T ss_pred             ccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECCCC-CccccCchHhhcccCccc
Confidence            4445555555555544433 34444455555555555554444443  44455555555 4 443332  3444444444


Q ss_pred             EEEee
Q 037494          245 HLNFD  249 (394)
Q Consensus       245 ~L~l~  249 (394)
                      +|+++
T Consensus       150 ~L~L~  154 (562)
T 3a79_B          150 FLGLS  154 (562)
T ss_dssp             EEEEE
T ss_pred             EEecC
Confidence            44444

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.85  E-value=1.5e-20  Score=195.84  Aligned_cols=261  Identities=22%  Similarity=0.175  Sum_probs=173.9

Q ss_pred             CCceEEEEEEeCCcchhhcc--CCCCCccEEEEecCCCccchhcch-hHHhccCCceeEEEcCCCCCCCC-cccccCccc
Q 037494          121 LATVKRCFILEDLIEFISLE--QSDMYLQSFLNHSSESDHLALIDC-ENFCENFKYLRVLNWGSAVLDQF-PPGLENLFL  196 (394)
Q Consensus       121 ~~~~r~L~l~~~~~~~~~~~--~~~~~lr~L~l~~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~  196 (394)
                      +..+++|.+..+....+...  ..+++|+.|.+.++....    .+ +..|.++++|++|++++|.+..+ |..++++++
T Consensus        23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~----~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~   98 (844)
T 3j0a_A           23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPL----TIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFH   98 (844)
T ss_dssp             CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCC----EECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSS
T ss_pred             CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCcc----ccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcc
Confidence            67889999997776665432  789999999999885432    33 44459999999999999998865 788999999


Q ss_pred             ccEEecCCCCCcc-cccc--ccCCCCCcEEEcc-cCCccccc--hhhccCccCcEEEeeCCCCCCC-CCCCCCCC--CcC
Q 037494          197 LKYLQLNIPTLKC-LPLL--ICTLLNLETLEMP-AGYIDHSP--EGIWMMQKLMHLNFDSITLPAP-PKNYSSSL--KNL  267 (394)
Q Consensus       197 L~~L~l~~~~l~~-lp~~--l~~l~~L~~L~l~-~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~-~p~~l~~l--~~L  267 (394)
                      |++|++++|.+.. +|..  ++++++|++|+++ | .+..++  ..++++++|++|+++ +|.+.. .|..++.+  ++|
T Consensus        99 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls-~N~i~~~~~~~l~~l~~~~L  176 (844)
T 3j0a_A           99 LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFS-SNQIFLVCEHELEPLQGKTL  176 (844)
T ss_dssp             CCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEE-SSCCCCCCSGGGHHHHHCSS
T ss_pred             cCEeeCcCCCCCcccccCccccccCCCCEEECCCC-cccccccchhHhhCCCCCEEECC-CCcCCeeCHHHcccccCCcc
Confidence            9999999998875 5554  8899999999999 8 666653  468899999999999 877433 23333333  344


Q ss_pred             ceeCccccC--CCcchhcCCC-----------------------------------------------------------
Q 037494          268 IFISALHPS--SCTPDILSRL-----------------------------------------------------------  286 (394)
Q Consensus       268 ~~L~~~~~~--~~~~~~l~~l-----------------------------------------------------------  286 (394)
                      +.|.+..+.  ...+..++.+                                                           
T Consensus       177 ~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~  256 (844)
T 3j0a_A          177 SFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPD  256 (844)
T ss_dssp             CCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGG
T ss_pred             ceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCC
Confidence            444443333  1111111211                                                           


Q ss_pred             ---------CCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCccCC-CCCCCCCCceEEEEecccCCCCCcc
Q 037494          287 ---------PTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMP  356 (394)
Q Consensus       287 ---------~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l~~~~~~  356 (394)
                               ++|+.|++++|.  .....+..+..+++|+.|++++ +++..+.| .+.. +++|+.|+|++|++....+.
T Consensus       257 ~~~f~~l~~~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~  332 (844)
T 3j0a_A          257 QNTFAGLARSSVRHLDLSHGF--VFSLNSRVFETLKDLKVLNLAY-NKINKIADEAFYG-LDNLQVLNLSYNLLGELYSS  332 (844)
T ss_dssp             GTTTTTTTTSCCCEEECTTCC--CCEECSCCSSSCCCCCEEEEES-CCCCEECTTTTTT-CSSCCEEEEESCCCSCCCSC
T ss_pred             hhhhhccccCCccEEECCCCc--ccccChhhhhcCCCCCEEECCC-CcCCCCChHHhcC-CCCCCEEECCCCCCCccCHH
Confidence                     345555555554  3333344555666666666665 44555524 6666 77788888888877666566


Q ss_pred             cccCCCCCCeEEEecccccCceeEEeCCCCCcCCccc
Q 037494          357 MLERLPRLQVMKLKRNSYFGRKLACVGSGGFPELQVL  393 (394)
Q Consensus       357 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~fp~L~~L  393 (394)
                      .++.+++|+.|++++|.+...... . ...+++|+.|
T Consensus       333 ~~~~l~~L~~L~L~~N~i~~~~~~-~-~~~l~~L~~L  367 (844)
T 3j0a_A          333 NFYGLPKVAYIDLQKNHIAIIQDQ-T-FKFLEKLQTL  367 (844)
T ss_dssp             SCSSCTTCCEEECCSCCCCCCCSS-C-SCSCCCCCEE
T ss_pred             HhcCCCCCCEEECCCCCCCccChh-h-hcCCCCCCEE
Confidence            777788888888877766543311 0 2345666655

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.85  E-value=2.5e-20  Score=180.69  Aligned_cols=228  Identities=15%  Similarity=0.131  Sum_probs=126.5

Q ss_pred             CCceEEEEEEeCCcchhhccCCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCcccccCcccccEE
Q 037494          121 LATVKRCFILEDLIEFISLEQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYL  200 (394)
Q Consensus       121 ~~~~r~L~l~~~~~~~~~~~~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L  200 (394)
                      ...+++|.+..+....++ ...+++|+.|.+.++....     ++ + ..+++|++|++++|.++.+|  ++.+++|++|
T Consensus        63 l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~-----~~-~-~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L  132 (457)
T 3bz5_A           63 LTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTN-----LD-V-TPLTKLTYLNCDTNKLTKLD--VSQNPLLTYL  132 (457)
T ss_dssp             CTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSC-----CC-C-TTCTTCCEEECCSSCCSCCC--CTTCTTCCEE
T ss_pred             cCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCce-----ee-c-CCCCcCCEEECCCCcCCeec--CCCCCcCCEE
Confidence            455666666655444443 3456666666666666542     12 3 66666666666666666654  6666666666


Q ss_pred             ecCCCCCccccccccCCCCCcEEEcc-cCCccccchhhccCccCcEEEeeCCCCCCCCCCCCCCCCcCceeCccccCCCc
Q 037494          201 QLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITLPAPPKNYSSSLKNLIFISALHPSSCT  279 (394)
Q Consensus       201 ~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~~  279 (394)
                      ++++|.++.+|  ++.+++|++|+++ |..+..+  .++.+++|++|+++ +|.+..+|  ++.+++|+.|.+..+....
T Consensus       133 ~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls-~n~l~~l~--l~~l~~L~~L~l~~N~l~~  205 (457)
T 3bz5_A          133 NCARNTLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCS-FNKITELD--VSQNKLLNRLNCDTNNITK  205 (457)
T ss_dssp             ECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECC-SSCCCCCC--CTTCTTCCEEECCSSCCSC
T ss_pred             ECCCCccceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECC-CCccceec--cccCCCCCEEECcCCcCCe
Confidence            66666666653  5566666666666 5444444  25566666666666 66655554  5666666666666665111


Q ss_pred             chhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCccCCCCCCCCCCceEEEEecccCCCCCc----
Q 037494          280 PDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVLSEYQFPPSLIQLSLSNTELMEDPM----  355 (394)
Q Consensus       280 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p~~~~~l~~L~~L~L~~~~l~~~~~----  355 (394)
                      . .++.+++|+.|++++|.  . ..+|  +..+++|+.|++++ +.+..+ | +.. +++|+.|+++.+++....+    
T Consensus       206 ~-~l~~l~~L~~L~Ls~N~--l-~~ip--~~~l~~L~~L~l~~-N~l~~~-~-~~~-l~~L~~L~l~~n~L~~L~l~~n~  275 (457)
T 3bz5_A          206 L-DLNQNIQLTFLDCSSNK--L-TEID--VTPLTQLTYFDCSV-NPLTEL-D-VST-LSKLTTLHCIQTDLLEIDLTHNT  275 (457)
T ss_dssp             C-CCTTCTTCSEEECCSSC--C-SCCC--CTTCTTCSEEECCS-SCCSCC-C-CTT-CTTCCEEECTTCCCSCCCCTTCT
T ss_pred             e-ccccCCCCCEEECcCCc--c-cccC--ccccCCCCEEEeeC-CcCCCc-C-HHH-CCCCCEEeccCCCCCEEECCCCc
Confidence            1 35666666666666664  2 2233  55666666666666 445544 3 222 3333333333333222111    


Q ss_pred             ----ccccCCCCCCeEEEeccccc
Q 037494          356 ----PMLERLPRLQVMKLKRNSYF  375 (394)
Q Consensus       356 ----~~l~~l~~L~~L~l~~n~~~  375 (394)
                          -.++.+++|+.|++++|...
T Consensus       276 ~~~~~~~~~l~~L~~L~Ls~n~~l  299 (457)
T 3bz5_A          276 QLIYFQAEGCRKIKELDVTHNTQL  299 (457)
T ss_dssp             TCCEEECTTCTTCCCCCCTTCTTC
T ss_pred             cCCcccccccccCCEEECCCCccc
Confidence                11345666666666655543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.85  E-value=4.1e-21  Score=193.09  Aligned_cols=242  Identities=16%  Similarity=0.098  Sum_probs=204.8

Q ss_pred             CCceEEEEEEeCCcchhhccCCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCC---cccccCcccc
Q 037494          121 LATVKRCFILEDLIEFISLEQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQF---PPGLENLFLL  197 (394)
Q Consensus       121 ~~~~r~L~l~~~~~~~~~~~~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l---p~~i~~l~~L  197 (394)
                      ..+++.+.+..+....++.. .+++|+.|.+.++....    . ..+ ..+++|++|++++|.++..   |..++.+++|
T Consensus       306 ~~~L~~L~l~~n~l~~lp~~-~l~~L~~L~l~~n~~~~----~-~~~-~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L  378 (606)
T 3vq2_A          306 HFKWQSLSIIRCQLKQFPTL-DLPFLKSLTLTMNKGSI----S-FKK-VALPSLSYLDLSRNALSFSGCCSYSDLGTNSL  378 (606)
T ss_dssp             TCCCSEEEEESCCCSSCCCC-CCSSCCEEEEESCSSCE----E-CCC-CCCTTCCEEECCSSCEEEEEECCHHHHCCSCC
T ss_pred             cccCCEEEcccccCcccccC-CCCccceeeccCCcCcc----c-hhh-ccCCCCCEEECcCCccCCCcchhhhhccCCcc
Confidence            56899999997777777755 89999999999995542    1 133 7899999999999998855   7888999999


Q ss_pred             cEEecCCCCCccccccccCCCCCcEEEcc-cCCccccch--hhccCccCcEEEeeCCCCCC-CCCCCCCCCCcCceeCcc
Q 037494          198 KYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPE--GIWMMQKLMHLNFDSITLPA-PPKNYSSSLKNLIFISAL  273 (394)
Q Consensus       198 ~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~-~~p~~l~~l~~L~~L~~~  273 (394)
                      ++|++++|.+..+|..++.+++|++|+++ | .+...++  .+..+++|++|+++ +|... ..|..++.+++|++|++.
T Consensus       379 ~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~l~  456 (606)
T 3vq2_A          379 RHLDLSFNGAIIMSANFMGLEELQHLDFQHS-TLKRVTEFSAFLSLEKLLYLDIS-YTNTKIDFDGIFLGLTSLNTLKMA  456 (606)
T ss_dssp             CEEECCSCSEEEECCCCTTCTTCCEEECTTS-EEESTTTTTTTTTCTTCCEEECT-TSCCEECCTTTTTTCTTCCEEECT
T ss_pred             cEeECCCCccccchhhccCCCCCCeeECCCC-ccCCccChhhhhccccCCEEECc-CCCCCccchhhhcCCCCCCEEECC
Confidence            99999999999999999999999999999 8 7766654  78899999999999 99844 456779999999999999


Q ss_pred             ccC-C--CcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCccCC-CCCCCCCCceEEEEeccc
Q 037494          274 HPS-S--CTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTE  349 (394)
Q Consensus       274 ~~~-~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~  349 (394)
                      ++. .  ..+..++.+++|+.|++++|.  ..+..|..+..+++|+.|++++ +++..+.| ++.. +++|+.|+|++|+
T Consensus       457 ~n~l~~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~-l~~L~~L~l~~N~  532 (606)
T 3vq2_A          457 GNSFKDNTLSNVFANTTNLTFLDLSKCQ--LEQISWGVFDTLHRLQLLNMSH-NNLLFLDSSHYNQ-LYSLSTLDCSFNR  532 (606)
T ss_dssp             TCEEGGGEECSCCTTCTTCCEEECTTSC--CCEECTTTTTTCTTCCEEECCS-SCCSCEEGGGTTT-CTTCCEEECTTSC
T ss_pred             CCcCCCcchHHhhccCCCCCEEECCCCc--CCccChhhhcccccCCEEECCC-CcCCCcCHHHccC-CCcCCEEECCCCc
Confidence            988 3  367789999999999999997  6666678899999999999998 56666646 8888 9999999999999


Q ss_pred             CCCCCcccccCCC-CCCeEEEecccccC
Q 037494          350 LMEDPMPMLERLP-RLQVMKLKRNSYFG  376 (394)
Q Consensus       350 l~~~~~~~l~~l~-~L~~L~l~~n~~~~  376 (394)
                      ++. .++.+..++ +|+.|++++|.+..
T Consensus       533 l~~-~p~~~~~l~~~L~~l~l~~N~~~c  559 (606)
T 3vq2_A          533 IET-SKGILQHFPKSLAFFNLTNNSVAC  559 (606)
T ss_dssp             CCC-EESCGGGSCTTCCEEECCSCCCCC
T ss_pred             Ccc-cCHhHhhhcccCcEEEccCCCccc
Confidence            864 444588887 69999999987653

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.84  E-value=7e-21  Score=191.00  Aligned_cols=148  Identities=13%  Similarity=0.133  Sum_probs=120.1

Q ss_pred             CCCCCccEEEEecCCCccchhcch-hHHhccCCceeEEEcCCCCCCCCc-ccccCcccccEEecCCCCCcccccc-ccCC
Q 037494          141 QSDMYLQSFLNHSSESDHLALIDC-ENFCENFKYLRVLNWGSAVLDQFP-PGLENLFLLKYLQLNIPTLKCLPLL-ICTL  217 (394)
Q Consensus       141 ~~~~~lr~L~l~~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~l~~lp~~-l~~l  217 (394)
                      ..+++++.+.+.++...     .+ +.+|..+++|++|++++|.+..++ ..++.+++|++|++++|.+..+|+. ++++
T Consensus        48 l~l~~l~~l~l~~~~l~-----~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  122 (597)
T 3oja_B           48 ITLNNQKIVTFKNSTMR-----KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV  122 (597)
T ss_dssp             GGGCCCSEEEESSCEES-----EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             ccCCCceEEEeeCCCCC-----CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCC
Confidence            45678999999888765     34 556699999999999999999776 5899999999999999999988765 6899


Q ss_pred             CCCcEEEcc-cCCccccchh-hccCccCcEEEeeCCCCCCCCCC-CCCCCCcCceeCccccC-CCcchhcCCCCCCCeEE
Q 037494          218 LNLETLEMP-AGYIDHSPEG-IWMMQKLMHLNFDSITLPAPPKN-YSSSLKNLIFISALHPS-SCTPDILSRLPTVQTLR  293 (394)
Q Consensus       218 ~~L~~L~l~-~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~  293 (394)
                      ++|++|+++ | .+..+|.. ++.+++|++|+++ +|.+..+++ .++.+++|++|++.++. ...  .++.+++|+.|+
T Consensus       123 ~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~l~~L~~L~  198 (597)
T 3oja_B          123 PLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMS-NNNLERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHAN  198 (597)
T ss_dssp             TTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECC-SSCCCBCCTTTTTTCTTCCEEECTTSCCSBC--CGGGCTTCSEEE
T ss_pred             CCCCEEEeeCC-CCCCCCHHHhccCCCCCEEEee-CCcCCCCChhhhhcCCcCcEEECcCCCCCCc--Chhhhhhhhhhh
Confidence            999999999 8 89999976 5899999999999 998666655 68999999999999887 222  133344555544


Q ss_pred             Eeec
Q 037494          294 ISGD  297 (394)
Q Consensus       294 l~~~  297 (394)
                      +++|
T Consensus       199 l~~n  202 (597)
T 3oja_B          199 VSYN  202 (597)
T ss_dssp             CCSS
T ss_pred             cccC
Confidence            4444

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.84  E-value=2.2e-20  Score=186.16  Aligned_cols=103  Identities=15%  Similarity=0.055  Sum_probs=84.2

Q ss_pred             CCceEEEEEEeCCcchhhc--cCCCCCccEEEEecCCCccchhcch-hHHhccCCceeEEEcCCCCCCCCcccccCcccc
Q 037494          121 LATVKRCFILEDLIEFISL--EQSDMYLQSFLNHSSESDHLALIDC-ENFCENFKYLRVLNWGSAVLDQFPPGLENLFLL  197 (394)
Q Consensus       121 ~~~~r~L~l~~~~~~~~~~--~~~~~~lr~L~l~~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L  197 (394)
                      +..+++|.+..+....++.  ...+++|+.|.+.++...     .+ ++.|.++++|++|++++|.++.+|..  .+++|
T Consensus        51 ~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-----~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L  123 (562)
T 3a79_B           51 PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-----SLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASL  123 (562)
T ss_dssp             CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCC-----EECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTC
T ss_pred             CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCC-----cCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccC
Confidence            4678899998777777653  378899999999999876     33 45558999999999999999988876  89999


Q ss_pred             cEEecCCCCCcccc--ccccCCCCCcEEEcc-cCCcc
Q 037494          198 KYLQLNIPTLKCLP--LLICTLLNLETLEMP-AGYID  231 (394)
Q Consensus       198 ~~L~l~~~~l~~lp--~~l~~l~~L~~L~l~-~~~l~  231 (394)
                      ++|++++|.+..+|  ..++++++|++|+++ | .+.
T Consensus       124 ~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n-~l~  159 (562)
T 3a79_B          124 RHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAA-KFR  159 (562)
T ss_dssp             SEEECCSSCCSBCCCCGGGGGCTTCCEEEEECS-BCC
T ss_pred             CEEECCCCCccccCchHhhcccCcccEEecCCC-ccc
Confidence            99999999988764  678889999999888 6 443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.84  E-value=2.3e-20  Score=171.67  Aligned_cols=194  Identities=20%  Similarity=0.253  Sum_probs=130.0

Q ss_pred             CCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCcccccCcccccEEecCCCCCccccccccCCCCCc
Q 037494          142 SDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLE  221 (394)
Q Consensus       142 ~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~  221 (394)
                      .+++++.|.+.++...     .++++ ..+++|++|++++|.+..++. +..+++|++|++++|.++.+| .++.+++|+
T Consensus        39 ~l~~L~~L~l~~~~i~-----~l~~~-~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~  110 (308)
T 1h6u_A           39 DLDGITTLSAFGTGVT-----TIEGV-QYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIK  110 (308)
T ss_dssp             HHHTCCEEECTTSCCC-----CCTTG-GGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCC
T ss_pred             HcCCcCEEEeeCCCcc-----Cchhh-hccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCC
Confidence            4567777777777665     33444 777777777777777777766 777777777777777777765 577777777


Q ss_pred             EEEcc-cCCccccchhhccCccCcEEEeeCCCCCCCCCCCCCCCCcCceeCccccCCCcchhcCCCCCCCeEEEeecCCc
Q 037494          222 TLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITLPAPPKNYSSSLKNLIFISALHPSSCTPDILSRLPTVQTLRISGDLSH  300 (394)
Q Consensus       222 ~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  300 (394)
                      +|+++ | .+..+|. +..+++|++|+++ +|.+..+++ ++.+++|+.|++.++.......+..+++|+.|++++|.  
T Consensus       111 ~L~l~~n-~l~~~~~-l~~l~~L~~L~l~-~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~--  184 (308)
T 1h6u_A          111 TLDLTST-QITDVTP-LAGLSNLQVLYLD-LNQITNISP-LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNK--  184 (308)
T ss_dssp             EEECTTS-CCCCCGG-GTTCTTCCEEECC-SSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC--
T ss_pred             EEECCCC-CCCCchh-hcCCCCCCEEECC-CCccCcCcc-ccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCCCc--
Confidence            77777 6 6766664 7777777777777 777666554 66777777777777662222236777777777777774  


Q ss_pred             cccchhhhhcCCCCCcEEEecCCCCCCccCCCCCCCCCCceEEEEecccCCCCC
Q 037494          301 YHSGVSKSLCELHKLECLKLVNGSKLSRMVLSEYQFPPSLIQLSLSNTELMEDP  354 (394)
Q Consensus       301 ~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p~~~~~l~~L~~L~L~~~~l~~~~  354 (394)
                      . ..++. +..+++|+.|++++ +.+..+ |.+.. +++|+.|++++|++...+
T Consensus       185 l-~~~~~-l~~l~~L~~L~L~~-N~l~~~-~~l~~-l~~L~~L~l~~N~i~~~~  233 (308)
T 1h6u_A          185 I-SDISP-LASLPNLIEVHLKN-NQISDV-SPLAN-TSNLFIVTLTNQTITNQP  233 (308)
T ss_dssp             C-CCCGG-GGGCTTCCEEECTT-SCCCBC-GGGTT-CTTCCEEEEEEEEEECCC
T ss_pred             c-CcChh-hcCCCCCCEEEccC-CccCcc-ccccC-CCCCCEEEccCCeeecCC
Confidence            2 22222 56667777777776 455555 33444 677777777777665433

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.84  E-value=1.2e-20  Score=177.04  Aligned_cols=213  Identities=17%  Similarity=0.139  Sum_probs=176.1

Q ss_pred             CceeEEEcCCCCCCCCcc-cccCcccccEEecCCCCCcccc-ccccCCCCCcEEEcc-cCCccccchh-hccCccCcEEE
Q 037494          172 KYLRVLNWGSAVLDQFPP-GLENLFLLKYLQLNIPTLKCLP-LLICTLLNLETLEMP-AGYIDHSPEG-IWMMQKLMHLN  247 (394)
Q Consensus       172 ~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~l~~lp-~~l~~l~~L~~L~l~-~~~l~~lp~~-i~~l~~L~~L~  247 (394)
                      ++|++|++++|.++.+|. .++++++|++|++++|.++.++ ..++++++|++|+++ | .+..+|.. ++.+++|++|+
T Consensus        52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~  130 (353)
T 2z80_A           52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-YLSNLSSSWFKPLSSLTFLN  130 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSSCCHHHHTTCTTCSEEE
T ss_pred             ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC-cCCcCCHhHhCCCccCCEEE
Confidence            589999999999998875 8999999999999999999875 568999999999999 8 89999876 88999999999


Q ss_pred             eeCCCCCCCCCC--CCCCCCcCceeCccccC--CC-cchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecC
Q 037494          248 FDSITLPAPPKN--YSSSLKNLIFISALHPS--SC-TPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVN  322 (394)
Q Consensus       248 l~~~~~~~~~p~--~l~~l~~L~~L~~~~~~--~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~  322 (394)
                      ++ +|.+..+|.  .++.+++|++|++.++.  .. .+..++.+++|+.|++++|.  .....+..+..+++|+.|++++
T Consensus       131 L~-~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~l~~l~~L~~L~l~~  207 (353)
T 2z80_A          131 LL-GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD--LQSYEPKSLKSIQNVSHLILHM  207 (353)
T ss_dssp             CT-TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT--CCEECTTTTTTCSEEEEEEEEC
T ss_pred             CC-CCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC--cCccCHHHHhccccCCeecCCC
Confidence            99 999888887  68899999999999984  33 34678999999999999997  6666688899999999999998


Q ss_pred             CCCCCccCC--CCCCCCCCceEEEEecccCCCCCc-------------------------------ccccCCCCCCeEEE
Q 037494          323 GSKLSRMVL--SEYQFPPSLIQLSLSNTELMEDPM-------------------------------PMLERLPRLQVMKL  369 (394)
Q Consensus       323 ~~~L~~L~p--~~~~~l~~L~~L~L~~~~l~~~~~-------------------------------~~l~~l~~L~~L~l  369 (394)
                       +.+..+ |  .+.. +++|+.|++++|++....+                               +.++.+++|+.|++
T Consensus       208 -n~l~~~-~~~~~~~-~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~L  284 (353)
T 2z80_A          208 -KQHILL-LEIFVDV-TSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEF  284 (353)
T ss_dssp             -SCSTTH-HHHHHHH-TTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEEC
T ss_pred             -Cccccc-hhhhhhh-cccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEEC
Confidence             557766 5  4445 7899999999999876432                               23567899999999


Q ss_pred             ecccccCceeEEeCCCCCcCCccc
Q 037494          370 KRNSYFGRKLACVGSGGFPELQVL  393 (394)
Q Consensus       370 ~~n~~~~~~~~~~~~~~fp~L~~L  393 (394)
                      ++|.+.....  .-.+.+++|+.|
T Consensus       285 s~N~l~~i~~--~~~~~l~~L~~L  306 (353)
T 2z80_A          285 SRNQLKSVPD--GIFDRLTSLQKI  306 (353)
T ss_dssp             CSSCCCCCCT--TTTTTCTTCCEE
T ss_pred             CCCCCCccCH--HHHhcCCCCCEE
Confidence            9998874321  101356777665

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.84  E-value=3.3e-20  Score=168.67  Aligned_cols=209  Identities=16%  Similarity=0.097  Sum_probs=173.8

Q ss_pred             eEEEcCCCCCCCCcccccCcccccEEecCCCCCccccc-cccCCCCCcEEEcc-cCCcccc-chhhccCccCcEEEeeCC
Q 037494          175 RVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPL-LICTLLNLETLEMP-AGYIDHS-PEGIWMMQKLMHLNFDSI  251 (394)
Q Consensus       175 ~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~-~~~l~~l-p~~i~~l~~L~~L~l~~~  251 (394)
                      ++++.++++++.+|..+  .++|++|++++|.++.+|. .++++++|++|+++ | .+..+ |..+..+++|++|+++ +
T Consensus        14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~-~   89 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLS-D   89 (285)
T ss_dssp             CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECC-S
T ss_pred             eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCC-C
Confidence            67889999999998655  4699999999999998874 58899999999999 8 78777 5679999999999999 9


Q ss_pred             CC-CCCC-CCCCCCCCcCceeCccccC--CCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCC
Q 037494          252 TL-PAPP-KNYSSSLKNLIFISALHPS--SCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLS  327 (394)
Q Consensus       252 ~~-~~~~-p~~l~~l~~L~~L~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~  327 (394)
                      |. ...+ |..++.+++|++|++.++.  ...+..+..+++|+.|++++|.  .....+..+..+++|+.|++++ +.+.
T Consensus        90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~-n~l~  166 (285)
T 1ozn_A           90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA--LQALPDDTFRDLGNLTHLFLHG-NRIS  166 (285)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCS-SCCC
T ss_pred             CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCc--ccccCHhHhccCCCccEEECCC-Cccc
Confidence            97 7777 5678999999999999988  4445678999999999999996  4444445688899999999998 6788


Q ss_pred             ccCC-CCCCCCCCceEEEEecccCCCCCcccccCCCCCCeEEEecccccCceeEEeCCCCCcCCccc
Q 037494          328 RMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFGRKLACVGSGGFPELQVL  393 (394)
Q Consensus       328 ~L~p-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~fp~L~~L  393 (394)
                      .+.+ ++.. +++|+.|++++|++....+..++.+++|+.|++++|.+.+.....  ...+++|+.|
T Consensus       167 ~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L  230 (285)
T 1ozn_A          167 SVPERAFRG-LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEA--LAPLRALQYL  230 (285)
T ss_dssp             EECTTTTTT-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHH--HTTCTTCCEE
T ss_pred             ccCHHHhcC-ccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHH--cccCcccCEE
Confidence            8823 6888 999999999999997777778999999999999999887644211  2356777665

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.84  E-value=4e-20  Score=167.33  Aligned_cols=198  Identities=21%  Similarity=0.194  Sum_probs=143.7

Q ss_pred             CceeEEEcCCCCCCCCcc-cccCcccccEEecCCCCCccccc-cccCCCCCcEEEcc-cCCccccc-hhhccCccCcEEE
Q 037494          172 KYLRVLNWGSAVLDQFPP-GLENLFLLKYLQLNIPTLKCLPL-LICTLLNLETLEMP-AGYIDHSP-EGIWMMQKLMHLN  247 (394)
Q Consensus       172 ~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~-~~~l~~lp-~~i~~l~~L~~L~  247 (394)
                      ++|++|++++|.++.++. .++++++|++|++++|.+..++. .++++++|++|+++ | .+..++ ..+..+++|++|+
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~  106 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLV  106 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEE
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC-ccCccChhhhcCCccccEEE
Confidence            457888888888776654 67778888888888888777664 57778888888888 7 666665 4577788888888


Q ss_pred             eeCCCCCCCCCC-CCCCCCcCceeCccccC-C--CcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCc----EEE
Q 037494          248 FDSITLPAPPKN-YSSSLKNLIFISALHPS-S--CTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLE----CLK  319 (394)
Q Consensus       248 l~~~~~~~~~p~-~l~~l~~L~~L~~~~~~-~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~----~L~  319 (394)
                      ++ +|.+..++. .++.+++|++|++.++. .  ..+..++.+++|+.|++++|.  .....+..+..+++|+    .|+
T Consensus       107 l~-~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~~l~l~L~  183 (276)
T 2z62_A          107 AV-ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK--IQSIYCTDLRVLHQMPLLNLSLD  183 (276)
T ss_dssp             CT-TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC--CCEECGGGGHHHHTCTTCCEEEE
T ss_pred             CC-CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC--CCcCCHHHhhhhhhccccceeee
Confidence            88 777666654 57788888888888777 2  246778888888888888886  3333334444444444    788


Q ss_pred             ecCCCCCCccCC-CCCCCCCCceEEEEecccCCCCCcccccCCCCCCeEEEecccccC
Q 037494          320 LVNGSKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFG  376 (394)
Q Consensus       320 l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~  376 (394)
                      +++ +.+..+ | .... ..+|+.|++++|+++..+...++.+++|+.|++++|.+..
T Consensus       184 ls~-n~l~~~-~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c  238 (276)
T 2z62_A          184 LSL-NPMNFI-QPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  238 (276)
T ss_dssp             CCS-SCCCEE-CTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred             cCC-Cccccc-CccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence            877 667777 5 4434 4589999999988876666667888899999998887653

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.83  E-value=4.1e-20  Score=178.59  Aligned_cols=221  Identities=14%  Similarity=0.086  Sum_probs=188.9

Q ss_pred             CCceEEEEEEeCCcchhhcc--CCCCCccEEEEecCCCccchhcch-hHHhccCCceeEEEcCCCCCCCCcc-cccCccc
Q 037494          121 LATVKRCFILEDLIEFISLE--QSDMYLQSFLNHSSESDHLALIDC-ENFCENFKYLRVLNWGSAVLDQFPP-GLENLFL  196 (394)
Q Consensus       121 ~~~~r~L~l~~~~~~~~~~~--~~~~~lr~L~l~~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~  196 (394)
                      +..++.|.+..+....++..  ..+++|+.|.+.++...     .+ +..|.++++|++|++++|.++.+|. .+..+++
T Consensus        63 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-----~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  137 (440)
T 3zyj_A           63 STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-----TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSK  137 (440)
T ss_dssp             CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC-----EECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSS
T ss_pred             CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC-----ccChhhccCCccCCEEECCCCcCCeeCHhHhhcccc
Confidence            56789999997777666533  78999999999999886     23 3445999999999999999998875 6899999


Q ss_pred             ccEEecCCCCCccccc-cccCCCCCcEEEcc-cCCccccch-hhccCccCcEEEeeCCCCCCCCCCCCCCCCcCceeCcc
Q 037494          197 LKYLQLNIPTLKCLPL-LICTLLNLETLEMP-AGYIDHSPE-GIWMMQKLMHLNFDSITLPAPPKNYSSSLKNLIFISAL  273 (394)
Q Consensus       197 L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~-~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~  273 (394)
                      |++|++++|.+..+|. .+.++++|++|+++ ++.+..+|. .+..+++|++|+++ +|.+..+| .+..+++|+.|++.
T Consensus       138 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~-~n~l~~~~-~~~~l~~L~~L~Ls  215 (440)
T 3zyj_A          138 LKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLA-MCNLREIP-NLTPLIKLDELDLS  215 (440)
T ss_dssp             CCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECT-TSCCSSCC-CCTTCSSCCEEECT
T ss_pred             CceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCC-CCcCcccc-ccCCCcccCEEECC
Confidence            9999999999998875 57899999999999 768888876 58899999999999 99988887 58899999999999


Q ss_pred             ccC--CCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCccCC-CCCCCCCCceEEEEecccC
Q 037494          274 HPS--SCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTEL  350 (394)
Q Consensus       274 ~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l  350 (394)
                      ++.  ...+..+..+++|+.|++++|.  .....+..+..+++|+.|+|++ +++..+.+ .+.. +++|+.|+|++|.+
T Consensus       216 ~N~l~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~-l~~L~~L~L~~Np~  291 (440)
T 3zyj_A          216 GNHLSAIRPGSFQGLMHLQKLWMIQSQ--IQVIERNAFDNLQSLVEINLAH-NNLTLLPHDLFTP-LHHLERIHLHHNPW  291 (440)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEECTTCC--CCEECTTSSTTCTTCCEEECTT-SCCCCCCTTTTSS-CTTCCEEECCSSCE
T ss_pred             CCccCccChhhhccCccCCEEECCCCc--eeEEChhhhcCCCCCCEEECCC-CCCCccChhHhcc-ccCCCEEEcCCCCc
Confidence            998  3446788999999999999997  5555667888999999999998 78888833 6777 99999999999987


Q ss_pred             CC
Q 037494          351 ME  352 (394)
Q Consensus       351 ~~  352 (394)
                      .+
T Consensus       292 ~C  293 (440)
T 3zyj_A          292 NC  293 (440)
T ss_dssp             EC
T ss_pred             cC
Confidence            54

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.83  E-value=4.3e-20  Score=179.06  Aligned_cols=223  Identities=16%  Similarity=0.105  Sum_probs=189.4

Q ss_pred             CCceEEEEEEeCCcchhhcc--CCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCcc-cccCcccc
Q 037494          121 LATVKRCFILEDLIEFISLE--QSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPP-GLENLFLL  197 (394)
Q Consensus       121 ~~~~r~L~l~~~~~~~~~~~--~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L  197 (394)
                      +..++.|.+..+....++..  ..+++|+.|.+.++....    ..+..|.++++|++|++++|.++.+|. .+..+++|
T Consensus        74 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  149 (452)
T 3zyi_A           74 PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQ----IEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKL  149 (452)
T ss_dssp             CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE----ECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTC
T ss_pred             CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCC----cChhhccCcccCCEEECCCCcCCccChhhhcccCCC
Confidence            56789999997777666433  789999999999998862    114445999999999999999998874 58899999


Q ss_pred             cEEecCCCCCccccc-cccCCCCCcEEEcc-cCCccccch-hhccCccCcEEEeeCCCCCCCCCCCCCCCCcCceeCccc
Q 037494          198 KYLQLNIPTLKCLPL-LICTLLNLETLEMP-AGYIDHSPE-GIWMMQKLMHLNFDSITLPAPPKNYSSSLKNLIFISALH  274 (394)
Q Consensus       198 ~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~-~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~  274 (394)
                      ++|++++|.+..+|. .+.++++|++|+++ |+.+..+|. .+..+++|++|+++ +|.+..+| .+..+++|+.|++.+
T Consensus       150 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~-~n~l~~~~-~~~~l~~L~~L~Ls~  227 (452)
T 3zyi_A          150 RELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLG-MCNIKDMP-NLTPLVGLEELEMSG  227 (452)
T ss_dssp             CEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECT-TSCCSSCC-CCTTCTTCCEEECTT
T ss_pred             CEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECC-CCcccccc-cccccccccEEECcC
Confidence            999999999998875 57899999999999 778888886 58899999999999 99988876 588999999999999


Q ss_pred             cC--CCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCccCC-CCCCCCCCceEEEEecccCC
Q 037494          275 PS--SCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTELM  351 (394)
Q Consensus       275 ~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l~  351 (394)
                      +.  ...+..+..+++|+.|++++|.  .....+..+..+++|+.|+|++ +++..+.+ .+.. +++|+.|+|++|.+.
T Consensus       228 N~l~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~-l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          228 NHFPEIRPGSFHGLSSLKKLWVMNSQ--VSLIERNAFDGLASLVELNLAH-NNLSSLPHDLFTP-LRYLVELHLHHNPWN  303 (452)
T ss_dssp             SCCSEECGGGGTTCTTCCEEECTTSC--CCEECTTTTTTCTTCCEEECCS-SCCSCCCTTSSTT-CTTCCEEECCSSCEE
T ss_pred             CcCcccCcccccCccCCCEEEeCCCc--CceECHHHhcCCCCCCEEECCC-CcCCccChHHhcc-ccCCCEEEccCCCcC
Confidence            98  4456789999999999999997  5566677889999999999998 68888823 6777 999999999999865


Q ss_pred             CC
Q 037494          352 ED  353 (394)
Q Consensus       352 ~~  353 (394)
                      +.
T Consensus       304 Cd  305 (452)
T 3zyi_A          304 CD  305 (452)
T ss_dssp             CS
T ss_pred             CC
Confidence            53

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.83  E-value=1.1e-20  Score=187.60  Aligned_cols=151  Identities=17%  Similarity=0.122  Sum_probs=119.3

Q ss_pred             CCceEEEEEEeCCcchhhc--cCCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCccc-ccCcccc
Q 037494          121 LATVKRCFILEDLIEFISL--EQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPG-LENLFLL  197 (394)
Q Consensus       121 ~~~~r~L~l~~~~~~~~~~--~~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L  197 (394)
                      ...+++|.+..+....++.  ...+++|++|.+.++....    ..++.|.++++|++|++++|.+..+++. ++.+++|
T Consensus        25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  100 (549)
T 2z81_A           25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT----IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSL  100 (549)
T ss_dssp             CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTC
T ss_pred             CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCc----cChhhccccccCCEEECCCCccCccCHHHhccCCCC
Confidence            4578999998776666543  2788999999999998762    2244458999999999999999977754 9999999


Q ss_pred             cEEecCCCCCcc--ccccccCCCCCcEEEcc-cCCccccc-hhhccCccCcEEEeeCCCCCC-CCCCCCCCCCcCceeCc
Q 037494          198 KYLQLNIPTLKC--LPLLICTLLNLETLEMP-AGYIDHSP-EGIWMMQKLMHLNFDSITLPA-PPKNYSSSLKNLIFISA  272 (394)
Q Consensus       198 ~~L~l~~~~l~~--lp~~l~~l~~L~~L~l~-~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~-~~p~~l~~l~~L~~L~~  272 (394)
                      ++|++++|.+..  .|..++++++|++|+++ |..+..+| ..++.+++|++|+++ +|... ..|..++.+++|++|.+
T Consensus       101 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~l~~l~~L~~L~l  179 (549)
T 2z81_A          101 KYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIK-ALSLRNYQSQSLKSIRDIHHLTL  179 (549)
T ss_dssp             CEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEE-ETTCCEECTTTTTTCSEEEEEEE
T ss_pred             cEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeecc-CCcccccChhhhhccccCceEec
Confidence            999999999884  46788999999999999 84477787 478899999999999 88844 36677777766666665


Q ss_pred             cccC
Q 037494          273 LHPS  276 (394)
Q Consensus       273 ~~~~  276 (394)
                      ..+.
T Consensus       180 ~~n~  183 (549)
T 2z81_A          180 HLSE  183 (549)
T ss_dssp             ECSB
T ss_pred             ccCc
Confidence            5443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.83  E-value=1.9e-19  Score=162.40  Aligned_cols=192  Identities=22%  Similarity=0.227  Sum_probs=89.6

Q ss_pred             eeEEEcCCCCCCCCcccccCcccccEEecCCCCCccccc-cccCCCCCcEEEcc-cCCccccchhh-ccCccCcEEEeeC
Q 037494          174 LRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPL-LICTLLNLETLEMP-AGYIDHSPEGI-WMMQKLMHLNFDS  250 (394)
Q Consensus       174 L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~-~~~l~~lp~~i-~~l~~L~~L~l~~  250 (394)
                      .+.++++++.++.+|..+.  .+++.|++++|.+..+|. .++++++|++|+++ | .+..+|..+ ..+++|++|+++ 
T Consensus        18 ~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~-   93 (270)
T 2o6q_A           18 KNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVT-   93 (270)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECC-
T ss_pred             CCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECC-
Confidence            3444555554444444332  344555555555444443 34445555555555 4 444444332 345555555555 


Q ss_pred             CCCCCCCCCC-CCCCCcCceeCccccC--CCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCC
Q 037494          251 ITLPAPPKNY-SSSLKNLIFISALHPS--SCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLS  327 (394)
Q Consensus       251 ~~~~~~~p~~-l~~l~~L~~L~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~  327 (394)
                      +|.+..+|+. ++.+++|++|++.++.  ...+..++.+++|+.|++++|.  .....+..+..+++|+.|++++ +.+.
T Consensus        94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~L~~-n~l~  170 (270)
T 2o6q_A           94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE--LQSLPKGVFDKLTSLKELRLYN-NQLK  170 (270)
T ss_dssp             SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCS-SCCS
T ss_pred             CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc--CCccCHhHccCCcccceeEecC-CcCc
Confidence            4444444432 3444555555554444  2222234455555555555553  2221122344555555555554 3444


Q ss_pred             ccCC-CCCCCCCCceEEEEecccCCCCCcccccCCCCCCeEEEeccc
Q 037494          328 RMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNS  373 (394)
Q Consensus       328 ~L~p-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~  373 (394)
                      .+.| .+.. +++|+.|++++|+++..+...+..+++|+.|++++|.
T Consensus       171 ~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          171 RVPEGAFDK-LTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             CCCTTTTTT-CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EeChhHhcc-CCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence            4412 3444 5555555555555544443345555555555555554

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.83  E-value=3.3e-20  Score=184.97  Aligned_cols=238  Identities=16%  Similarity=0.155  Sum_probs=155.9

Q ss_pred             CCceEEEEEEeCCcchhhc--cCCCCCccEEEEecCCCccchhcch-hHHhccCCceeEEEcCCCCCCCCc-ccccCccc
Q 037494          121 LATVKRCFILEDLIEFISL--EQSDMYLQSFLNHSSESDHLALIDC-ENFCENFKYLRVLNWGSAVLDQFP-PGLENLFL  196 (394)
Q Consensus       121 ~~~~r~L~l~~~~~~~~~~--~~~~~~lr~L~l~~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~  196 (394)
                      +..+++|.+..+....++.  ...+++|++|.+.++...     .+ ++.|.++++|++|++++|.+..++ ..++.+++
T Consensus        27 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-----~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  101 (570)
T 2z63_A           27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-----TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS  101 (570)
T ss_dssp             CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCC-----EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTT
T ss_pred             cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCC-----ccCcccccCchhCCEEeCcCCcCCccCHhhhcCccc
Confidence            4567888888666665543  267888888888888765     23 444488888899999888888665 67888888


Q ss_pred             ccEEecCCCCCccccc-cccCCCCCcEEEcc-cCCccc--cchhhccCccCcEEEeeCCCCCCCCC-CCCCCCCcC----
Q 037494          197 LKYLQLNIPTLKCLPL-LICTLLNLETLEMP-AGYIDH--SPEGIWMMQKLMHLNFDSITLPAPPK-NYSSSLKNL----  267 (394)
Q Consensus       197 L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~-~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~~p-~~l~~l~~L----  267 (394)
                      |++|++++|.++.+|. .++++++|++|+++ | .+..  +|..++++++|++|+++ +|.+..++ ..++.+++|    
T Consensus       102 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~~~  179 (570)
T 2z63_A          102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLS-SNKIQSIYCTDLRVLHQMPLLN  179 (570)
T ss_dssp             CCEEECTTSCCCCSTTCSCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECT-TSCCCEECGGGGHHHHTCTTCC
T ss_pred             cccccccccccccCCCccccccccccEEecCCC-ccceecChhhhcccCCCCEEeCc-CCccceecHHHccchhccchhh
Confidence            8888888888888775 58888888888888 7 6654  67888888888888888 87755554 345556666    


Q ss_pred             ceeCccccC-CCc-chhcCCCCCCCeEEEeecCC----------------------------------------------
Q 037494          268 IFISALHPS-SCT-PDILSRLPTVQTLRISGDLS----------------------------------------------  299 (394)
Q Consensus       268 ~~L~~~~~~-~~~-~~~l~~l~~L~~L~l~~~~~----------------------------------------------  299 (394)
                      +.|++..+. ... +..+..+ +|+.|++.++..                                              
T Consensus       180 ~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~  258 (570)
T 2z63_A          180 LSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT  258 (570)
T ss_dssp             CEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSE
T ss_pred             hhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccc
Confidence            566666555 211 1222222 455555544310                                              


Q ss_pred             ----------ccccchhhhhcCCCCCcEEEecCCCCCCccCC-CCCCCCCCceEEEEecccCCCCCcccccCCCCCCeEE
Q 037494          300 ----------HYHSGVSKSLCELHKLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMK  368 (394)
Q Consensus       300 ----------~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~  368 (394)
                                ...+..+..+..+++|+.|++++ ..+..+ | ++.. + +|+.|++++|.+...+  . ..+++|+.|+
T Consensus       259 l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~l~~l-~~~~~~-~-~L~~L~l~~n~~~~l~--~-~~l~~L~~L~  331 (570)
T 2z63_A          259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVS-VTIERV-KDFSYN-F-GWQHLELVNCKFGQFP--T-LKLKSLKRLT  331 (570)
T ss_dssp             EEEEEEEETTEEESCSTTTTGGGTTCSEEEEES-CEECSC-CBCCSC-C-CCSEEEEESCBCSSCC--B-CBCSSCCEEE
T ss_pred             hhhhhhhcchhhhhhchhhhcCcCcccEEEecC-ccchhh-hhhhcc-C-CccEEeeccCcccccC--c-ccccccCEEe
Confidence                      01223344556667777777776 456666 6 6666 5 7777777777664222  1 3444455555


Q ss_pred             Eeccc
Q 037494          369 LKRNS  373 (394)
Q Consensus       369 l~~n~  373 (394)
                      +++|.
T Consensus       332 l~~n~  336 (570)
T 2z63_A          332 FTSNK  336 (570)
T ss_dssp             EESCB
T ss_pred             CcCCc
Confidence            54443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.83  E-value=4.8e-20  Score=183.82  Aligned_cols=240  Identities=19%  Similarity=0.201  Sum_probs=182.0

Q ss_pred             CceEEEEEEeCCcchhhcc-CCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCcccccCcccccEE
Q 037494          122 ATVKRCFILEDLIEFISLE-QSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYL  200 (394)
Q Consensus       122 ~~~r~L~l~~~~~~~~~~~-~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L  200 (394)
                      ..++.+.+..+....++.. ..+ +|+.|.+.++...     .++.  ..+++|+.|++++|.+....+. ..+++|++|
T Consensus       282 ~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~-----~l~~--~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L  352 (570)
T 2z63_A          282 TNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFG-----QFPT--LKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFL  352 (570)
T ss_dssp             TTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCS-----SCCB--CBCSSCCEEEEESCBSCCBCCC-CBCTTCCEE
T ss_pred             CcccEEEecCccchhhhhhhccC-CccEEeeccCccc-----ccCc--ccccccCEEeCcCCcccccccc-ccCCCCCEE
Confidence            4556666664444444443 333 6667776666554     2221  3566777777777775533322 678889999


Q ss_pred             ecCCCCCccc---cccccCCCCCcEEEcc-cCCccccchhhccCccCcEEEeeCCCCCCCCC--CCCCCCCcCceeCccc
Q 037494          201 QLNIPTLKCL---PLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITLPAPPK--NYSSSLKNLIFISALH  274 (394)
Q Consensus       201 ~l~~~~l~~l---p~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p--~~l~~l~~L~~L~~~~  274 (394)
                      ++++|.+...   |..+..+++|++|+++ | .+..+|..+..+++|++|+++ +|.....+  ..++.+++|++|++.+
T Consensus       353 ~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~~l~~L~~L~l~~  430 (570)
T 2z63_A          353 DLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQ-HSNLKQMSEFSVFLSLRNLIYLDISH  430 (570)
T ss_dssp             ECCSSCCBEEEEEEHHHHTCSCCCEEECCSC-SEEEEEEEEETCTTCCEEECT-TSEEESCTTSCTTTTCTTCCEEECTT
T ss_pred             eCcCCccCccccccccccccCccCEEECCCC-ccccccccccccCCCCEEEcc-CCccccccchhhhhcCCCCCEEeCcC
Confidence            9999988765   6778889999999999 8 888888778899999999999 88755443  3578899999999998


Q ss_pred             cC--CCcchhcCCCCCCCeEEEeecCCccc-cchhhhhcCCCCCcEEEecCCCCCCccCC-CCCCCCCCceEEEEecccC
Q 037494          275 PS--SCTPDILSRLPTVQTLRISGDLSHYH-SGVSKSLCELHKLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTEL  350 (394)
Q Consensus       275 ~~--~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l  350 (394)
                      +.  ...+..++.+++|+.|++++|.  .. ..+|..+..+++|+.|++++ +.+..+.| ++.. +++|+.|++++|++
T Consensus       431 n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~p~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~-l~~L~~L~l~~n~l  506 (570)
T 2z63_A          431 THTRVAFNGIFNGLSSLEVLKMAGNS--FQENFLPDIFTELRNLTFLDLSQ-CQLEQLSPTAFNS-LSSLQVLNMASNQL  506 (570)
T ss_dssp             SCCEECCTTTTTTCTTCCEEECTTCE--EGGGEECSCCTTCTTCCEEECTT-SCCCEECTTTTTT-CTTCCEEECCSSCC
T ss_pred             CcccccchhhhhcCCcCcEEECcCCc--CccccchhhhhcccCCCEEECCC-CccccCChhhhhc-ccCCCEEeCCCCcC
Confidence            87  4566778889999999999986  44 35778888999999999998 56666646 8888 99999999999998


Q ss_pred             CCCCcccccCCCCCCeEEEecccccC
Q 037494          351 MEDPMPMLERLPRLQVMKLKRNSYFG  376 (394)
Q Consensus       351 ~~~~~~~l~~l~~L~~L~l~~n~~~~  376 (394)
                      +..++..++++++|+.|++++|.+.+
T Consensus       507 ~~~~~~~~~~l~~L~~L~l~~N~~~~  532 (570)
T 2z63_A          507 KSVPDGIFDRLTSLQKIWLHTNPWDC  532 (570)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCCCHHHhhcccCCcEEEecCCcccC
Confidence            87776778899999999998887654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.82  E-value=2.8e-20  Score=189.54  Aligned_cols=243  Identities=15%  Similarity=0.109  Sum_probs=161.2

Q ss_pred             CCceEEEEEEeCCcchhhcc--CCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCcc-cccCcccc
Q 037494          121 LATVKRCFILEDLIEFISLE--QSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPP-GLENLFLL  197 (394)
Q Consensus       121 ~~~~r~L~l~~~~~~~~~~~--~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L  197 (394)
                      +..+++|.+..+....++..  ..+++|++|.+.++....    ..++.|.++++|++|++++|.+..+|+ .++++++|
T Consensus        24 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L   99 (680)
T 1ziw_A           24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK----LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNL   99 (680)
T ss_dssp             CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCC----CCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCc----cCHHHHhcccCcCEEECCCCccCccChhhhccCCCC
Confidence            45677788776665555542  667788888887776652    224444778888888888888777775 57788888


Q ss_pred             cEEecCCCCCcccc-ccccCCCCCcEEEcc-cCCcccc-chhhccCccCcEEEeeCCCCCCCCCCC---CCCCCcCceeC
Q 037494          198 KYLQLNIPTLKCLP-LLICTLLNLETLEMP-AGYIDHS-PEGIWMMQKLMHLNFDSITLPAPPKNY---SSSLKNLIFIS  271 (394)
Q Consensus       198 ~~L~l~~~~l~~lp-~~l~~l~~L~~L~l~-~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~~---l~~l~~L~~L~  271 (394)
                      ++|++++|.+..+| ..++++++|++|+++ | .+... |..++++++|++|+++ +|.+..+++.   ...+++|+.|+
T Consensus       100 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~~~~~~L~~L~  177 (680)
T 1ziw_A          100 TELHLMSNSIQKIKNNPFVKQKNLITLDLSHN-GLSSTKLGTQVQLENLQELLLS-NNKIQALKSEELDIFANSSLKKLE  177 (680)
T ss_dssp             SEEECCSSCCCCCCSCTTTTCTTCCEEECCSS-CCSCCCCCSSSCCTTCCEEECC-SSCCCCBCHHHHGGGTTCEESEEE
T ss_pred             CEEECCCCccCccChhHccccCCCCEEECCCC-cccccCchhhcccccCCEEEcc-CCcccccCHHHhhccccccccEEE
Confidence            88888888777766 457778888888888 7 55544 3456778888888888 7775555542   22456777777


Q ss_pred             ccccC--CCcchhcCCC---------------------------CCCCeEEEeecCCccccchhhhhcCCC--CCcEEEe
Q 037494          272 ALHPS--SCTPDILSRL---------------------------PTVQTLRISGDLSHYHSGVSKSLCELH--KLECLKL  320 (394)
Q Consensus       272 ~~~~~--~~~~~~l~~l---------------------------~~L~~L~l~~~~~~~~~~~~~~l~~~~--~L~~L~l  320 (394)
                      +..+.  ...+..++.+                           ++|+.|+++++.  .....+..+..++  +|+.|++
T Consensus       178 L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~--l~~~~~~~~~~l~~~~L~~L~L  255 (680)
T 1ziw_A          178 LSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQ--LSTTSNTTFLGLKWTNLTMLDL  255 (680)
T ss_dssp             CTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSC--CCEECTTTTGGGGGSCCCEEEC
T ss_pred             CCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCc--ccccChhHhhccCcCCCCEEEC
Confidence            77765  2223333333                           345555555554  3333344454443  3777777


Q ss_pred             cCCCCCCccCC-CCCCCCCCceEEEEecccCCCCCcccccCCCCCCeEEEeccc
Q 037494          321 VNGSKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNS  373 (394)
Q Consensus       321 ~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~  373 (394)
                      ++ +.+..+.| ++.. +++|+.|++++|++....+..++++++|+.|++++|.
T Consensus       256 s~-n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~  307 (680)
T 1ziw_A          256 SY-NNLNVVGNDSFAW-LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSF  307 (680)
T ss_dssp             TT-SCCCEECTTTTTT-CTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCB
T ss_pred             CC-CCcCccCcccccC-cccccEeeCCCCccCccChhhhcCCCCccEEeccchh
Confidence            76 45555534 6777 8888888888888766666677888888888886543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.82  E-value=2.5e-19  Score=163.30  Aligned_cols=170  Identities=19%  Similarity=0.150  Sum_probs=78.1

Q ss_pred             CceeEEEcCCCCCCCC-cccccCcccccEEecCCCCCccccccccCCCCCcEEEcc-cCCccccchhhccCccCcEEEee
Q 037494          172 KYLRVLNWGSAVLDQF-PPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLNFD  249 (394)
Q Consensus       172 ~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~  249 (394)
                      +.+++|++++|.+..+ +..+..+++|++|++++|.++.+|.. +.+++|++|+++ | .+..+|..+..+++|++|+++
T Consensus        31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l~  108 (290)
T 1p9a_G           31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVS  108 (290)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEECC
T ss_pred             CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCC-cCCcCchhhccCCCCCEEECC
Confidence            3445555555554433 23444555555555555555544432 445555555555 4 444555444455555555555


Q ss_pred             CCCCCCCCCC-CCCCCCcCceeCccccC-CCc-chhcCCCCCCCeEEEeecCCccccchh-hhhcCCCCCcEEEecCCCC
Q 037494          250 SITLPAPPKN-YSSSLKNLIFISALHPS-SCT-PDILSRLPTVQTLRISGDLSHYHSGVS-KSLCELHKLECLKLVNGSK  325 (394)
Q Consensus       250 ~~~~~~~~p~-~l~~l~~L~~L~~~~~~-~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~  325 (394)
                       +|.+..+|+ .++.+++|++|++.++. ... +..+..+++|+.|++++|.  . ..+| ..+..+++|+.|++++ +.
T Consensus       109 -~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~--l-~~l~~~~~~~l~~L~~L~L~~-N~  183 (290)
T 1p9a_G          109 -FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN--L-TELPAGLLNGLENLDTLLLQE-NS  183 (290)
T ss_dssp             -SSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC--C-SCCCTTTTTTCTTCCEEECCS-SC
T ss_pred             -CCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc--C-CccCHHHhcCcCCCCEEECCC-Cc
Confidence             554444442 24445555555554444 111 2223444455555554443  1 1222 2233444555555544 34


Q ss_pred             CCccCC-CCCCCCCCceEEEEecccC
Q 037494          326 LSRMVL-SEYQFPPSLIQLSLSNTEL  350 (394)
Q Consensus       326 L~~L~p-~~~~~l~~L~~L~L~~~~l  350 (394)
                      +..+ | .+.. .++|+.|+|++|.+
T Consensus       184 l~~i-p~~~~~-~~~L~~l~L~~Np~  207 (290)
T 1p9a_G          184 LYTI-PKGFFG-SHLLPFAFLHGNPW  207 (290)
T ss_dssp             CCCC-CTTTTT-TCCCSEEECCSCCB
T ss_pred             CCcc-Chhhcc-cccCCeEEeCCCCc
Confidence            4444 4 3333 44455555554444

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.82  E-value=3e-19  Score=186.14  Aligned_cols=246  Identities=14%  Similarity=0.087  Sum_probs=185.6

Q ss_pred             CCceEEEEEEeCCc-chh-hc-cCCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCC-Cccc--ccCc
Q 037494          121 LATVKRCFILEDLI-EFI-SL-EQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQ-FPPG--LENL  194 (394)
Q Consensus       121 ~~~~r~L~l~~~~~-~~~-~~-~~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~-lp~~--i~~l  194 (394)
                      ...++.|.+..+.. ..+ +. ...+++|++|.+.++....    ..++.|.++++|++|++++|.+.. +|..  ++++
T Consensus        47 l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L  122 (844)
T 3j0a_A           47 LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYF----LHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNL  122 (844)
T ss_dssp             CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCE----ECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSC
T ss_pred             cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcc----cCHhHccCCcccCEeeCcCCCCCcccccCcccccc
Confidence            67789999985522 233 22 2788999999999998862    225555999999999999999884 5544  8999


Q ss_pred             ccccEEecCCCCCcccc--ccccCCCCCcEEEcc-cCCccc-cchhhccC--ccCcEEEeeCCCC-CCCCCCCCCCC---
Q 037494          195 FLLKYLQLNIPTLKCLP--LLICTLLNLETLEMP-AGYIDH-SPEGIWMM--QKLMHLNFDSITL-PAPPKNYSSSL---  264 (394)
Q Consensus       195 ~~L~~L~l~~~~l~~lp--~~l~~l~~L~~L~l~-~~~l~~-lp~~i~~l--~~L~~L~l~~~~~-~~~~p~~l~~l---  264 (394)
                      ++|++|++++|.+..++  ..++++++|++|+++ | .+.. .|..+..+  ++|+.|+++ +|. ....|..++.+   
T Consensus       123 ~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N-~i~~~~~~~l~~l~~~~L~~L~L~-~n~l~~~~~~~~~~~~~~  200 (844)
T 3j0a_A          123 KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN-QIFLVCEHELEPLQGKTLSFFSLA-ANSLYSRVSVDWGKCMNP  200 (844)
T ss_dssp             SSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS-CCCCCCSGGGHHHHHCSSCCCEEC-CSBSCCCCCCCCCSSSCT
T ss_pred             CCCCEEECCCCcccccccchhHhhCCCCCEEECCCC-cCCeeCHHHcccccCCccceEECC-CCccccccccchhhcCCc
Confidence            99999999999988653  568999999999999 8 5544 34555555  566666665 554 22222222222   


Q ss_pred             -----------------------------------------------------------------CcCceeCccccC--C
Q 037494          265 -----------------------------------------------------------------KNLIFISALHPS--S  277 (394)
Q Consensus       265 -----------------------------------------------------------------~~L~~L~~~~~~--~  277 (394)
                                                                                       ++|+.|++.++.  .
T Consensus       201 ~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~  280 (844)
T 3j0a_A          201 FRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFS  280 (844)
T ss_dssp             TTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCE
T ss_pred             cccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccc
Confidence                                                                             345555555544  2


Q ss_pred             CcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCccCC-CCCCCCCCceEEEEecccCCCCCcc
Q 037494          278 CTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMP  356 (394)
Q Consensus       278 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l~~~~~~  356 (394)
                      ..+..++.+++|+.|++++|.  .....+..+..+++|+.|++++ +.+..+.| .+.. +++|+.|++++|++......
T Consensus       281 ~~~~~~~~l~~L~~L~L~~n~--i~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~-l~~L~~L~L~~N~i~~~~~~  356 (844)
T 3j0a_A          281 LNSRVFETLKDLKVLNLAYNK--INKIADEAFYGLDNLQVLNLSY-NLLGELYSSNFYG-LPKVAYIDLQKNHIAIIQDQ  356 (844)
T ss_dssp             ECSCCSSSCCCCCEEEEESCC--CCEECTTTTTTCSSCCEEEEES-CCCSCCCSCSCSS-CTTCCEEECCSCCCCCCCSS
T ss_pred             cChhhhhcCCCCCEEECCCCc--CCCCChHHhcCCCCCCEEECCC-CCCCccCHHHhcC-CCCCCEEECCCCCCCccChh
Confidence            234557889999999999997  6666677889999999999998 66777745 8888 99999999999999777777


Q ss_pred             cccCCCCCCeEEEecccccC
Q 037494          357 MLERLPRLQVMKLKRNSYFG  376 (394)
Q Consensus       357 ~l~~l~~L~~L~l~~n~~~~  376 (394)
                      .++.+++|+.|++++|.+.+
T Consensus       357 ~~~~l~~L~~L~Ls~N~l~~  376 (844)
T 3j0a_A          357 TFKFLEKLQTLDLRDNALTT  376 (844)
T ss_dssp             CSCSCCCCCEEEEETCCSCC
T ss_pred             hhcCCCCCCEEECCCCCCCc
Confidence            78999999999999998765

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.81  E-value=1.7e-19  Score=165.93  Aligned_cols=195  Identities=20%  Similarity=0.207  Sum_probs=146.4

Q ss_pred             ccCCceeEEEcCCCCCCCCcccccCcccccEEecCCCCCccccccccCCCCCcEEEcc-cCCccccchhhccCccCcEEE
Q 037494          169 ENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLN  247 (394)
Q Consensus       169 ~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~  247 (394)
                      ..+++|++|+++++.+..+| .+..+++|++|++++|.+..+|. ++.+++|++|+++ | .+..+| .+..+++|++|+
T Consensus        38 ~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~  113 (308)
T 1h6u_A           38 ADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGN-PLKNVS-AIAGLQSIKTLD  113 (308)
T ss_dssp             HHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSC-CCSCCG-GGTTCTTCCEEE
T ss_pred             HHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCC-cCCCch-hhcCCCCCCEEE
Confidence            45677888888888888776 57788888888888888888776 8888888888888 7 777775 577888888888


Q ss_pred             eeCCCCCCCCCCCCCCCCcCceeCccccCCCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCC
Q 037494          248 FDSITLPAPPKNYSSSLKNLIFISALHPSSCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLS  327 (394)
Q Consensus       248 l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~  327 (394)
                      ++ +|.+..++. ++.+++|+.|++.++.......++.+++|+.|++++|.   ...++. +..+++|+.|++++ +.+.
T Consensus       114 l~-~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~---l~~~~~-l~~l~~L~~L~l~~-n~l~  186 (308)
T 1h6u_A          114 LT-STQITDVTP-LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQ---VSDLTP-LANLSKLTTLKADD-NKIS  186 (308)
T ss_dssp             CT-TSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSC---CCCCGG-GTTCTTCCEEECCS-SCCC
T ss_pred             CC-CCCCCCchh-hcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCc---CCCChh-hcCCCCCCEEECCC-CccC
Confidence            88 887766654 78888888888888773333337788888888888875   223333 77788888888887 5566


Q ss_pred             ccCCCCCCCCCCceEEEEecccCCCCCcccccCCCCCCeEEEecccccCce
Q 037494          328 RMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFGRK  378 (394)
Q Consensus       328 ~L~p~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~  378 (394)
                      .+ |.+.. +++|+.|++++|++....  .+..+++|+.|++++|.+++..
T Consensus       187 ~~-~~l~~-l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~~  233 (308)
T 1h6u_A          187 DI-SPLAS-LPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQP  233 (308)
T ss_dssp             CC-GGGGG-CTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECCC
T ss_pred             cC-hhhcC-CCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeecCC
Confidence            65 44455 788888888888875433  4778888888888888776643

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.81  E-value=4.3e-21  Score=177.35  Aligned_cols=213  Identities=19%  Similarity=0.134  Sum_probs=111.6

Q ss_pred             CCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCcccccCcccccEEecCCCCCccccccccCCCCCc
Q 037494          142 SDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLE  221 (394)
Q Consensus       142 ~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~  221 (394)
                      .+++|+.|.+.++....    ..+..|..+++|++|++++|.+...++ +..+++|++|++++|.++.+|.    .++|+
T Consensus        32 ~~~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~----~~~L~  102 (317)
T 3o53_A           32 SAWNVKELDLSGNPLSQ----ISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIE  102 (317)
T ss_dssp             TGGGCSEEECTTSCCCC----CCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEEE----CTTCC
T ss_pred             cCCCCCEEECcCCccCc----CCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccccC----CCCcC
Confidence            34456666666665541    113333666666666666666654443 5666666666666666655542    25566


Q ss_pred             EEEcc-cCCccccchhhccCccCcEEEeeCCCCCCCCCC-CCCCCCcCceeCccccC-C-Ccchhc-CCCCCCCeEEEee
Q 037494          222 TLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITLPAPPKN-YSSSLKNLIFISALHPS-S-CTPDIL-SRLPTVQTLRISG  296 (394)
Q Consensus       222 ~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L~~~~~~-~-~~~~~l-~~l~~L~~L~l~~  296 (394)
                      +|+++ | .+..++..  .+++|++|+++ +|.+..+++ .++.+++|++|++.++. . ..+..+ ..+++|+.|++++
T Consensus       103 ~L~l~~n-~l~~~~~~--~~~~L~~L~l~-~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~  178 (317)
T 3o53_A          103 TLHAANN-NISRVSCS--RGQGKKNIYLA-NNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY  178 (317)
T ss_dssp             EEECCSS-CCSEEEEC--CCSSCEEEECC-SSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred             EEECCCC-ccCCcCcc--ccCCCCEEECC-CCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCC
Confidence            66666 5 55554432  34556666666 555444433 35555566666665555 1 122223 2455566666665


Q ss_pred             cCCccccchhhhhcCCCCCcEEEecCCCCCCccCC-CCCCCCCCceEEEEecccCCCCCcccccCCCCCCeEEEeccccc
Q 037494          297 DLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYF  375 (394)
Q Consensus       297 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~  375 (394)
                      |.   ...++ ....+++|+.|++++ +.+..+ | .+.. +++|+.|++++|++.. .++.+..+++|+.|++++|.+.
T Consensus       179 N~---l~~~~-~~~~l~~L~~L~Ls~-N~l~~l-~~~~~~-l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          179 NF---IYDVK-GQVVFAKLKTLDLSS-NKLAFM-GPEFQS-AAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             SC---CCEEE-CCCCCTTCCEEECCS-SCCCEE-CGGGGG-GTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCB
T ss_pred             Cc---Ccccc-cccccccCCEEECCC-CcCCcc-hhhhcc-cCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCcc
Confidence            53   12222 122355566666655 445555 4 4444 5566666666665542 2233455566666666555544

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.80  E-value=1.6e-19  Score=179.32  Aligned_cols=179  Identities=14%  Similarity=0.016  Sum_probs=138.3

Q ss_pred             cchhhccCCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCc-ccccCcccccEEecCCCCCccccc
Q 037494          134 IEFISLEQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFP-PGLENLFLLKYLQLNIPTLKCLPL  212 (394)
Q Consensus       134 ~~~~~~~~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~l~~lp~  212 (394)
                      ...+|.. -.+++++|.+.++....    ..+..|.++++|++|++++|.+..++ ..++.+++|++|++++|.+..+|+
T Consensus        17 l~~ip~~-~~~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~   91 (549)
T 2z81_A           17 FTSIPSG-LTAAMKSLDLSFNKITY----IGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSS   91 (549)
T ss_dssp             CSSCCSC-CCTTCCEEECCSSCCCE----ECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCH
T ss_pred             ccccccc-CCCCccEEECcCCccCc----cChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCH
Confidence            3444543 23789999999998762    12344499999999999999999665 789999999999999999998886


Q ss_pred             c-ccCCCCCcEEEcc-cCCccc--cchhhccCccCcEEEeeCCCC-CCCCC-CCCCCCCcCceeCccccC--CCcchhcC
Q 037494          213 L-ICTLLNLETLEMP-AGYIDH--SPEGIWMMQKLMHLNFDSITL-PAPPK-NYSSSLKNLIFISALHPS--SCTPDILS  284 (394)
Q Consensus       213 ~-l~~l~~L~~L~l~-~~~l~~--lp~~i~~l~~L~~L~l~~~~~-~~~~p-~~l~~l~~L~~L~~~~~~--~~~~~~l~  284 (394)
                      . ++++++|++|+++ | .+..  .|..++.+++|++|+++ +|. ...+| ..++.+++|+.|++.++.  ...+..++
T Consensus        92 ~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~L~-~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~  169 (549)
T 2z81_A           92 SWFGPLSSLKYLNLMGN-PYQTLGVTSLFPNLTNLQTLRIG-NVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLK  169 (549)
T ss_dssp             HHHTTCTTCCEEECTTC-CCSSSCSSCSCTTCTTCCEEEEE-ESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTT
T ss_pred             HHhccCCCCcEEECCCC-cccccchhhhhhccCCccEEECC-CCccccccCHhhhhcccccCeeeccCCcccccChhhhh
Confidence            6 9999999999999 8 7774  46679999999999999 887 67776 468999999999999888  44567777


Q ss_pred             CCCCCCeEEEeecCCccccchhhh-hcCCCCCcEEEecC
Q 037494          285 RLPTVQTLRISGDLSHYHSGVSKS-LCELHKLECLKLVN  322 (394)
Q Consensus       285 ~l~~L~~L~l~~~~~~~~~~~~~~-l~~~~~L~~L~l~~  322 (394)
                      .+++|+.|++.++.   ...++.. +..+++|+.|++++
T Consensus       170 ~l~~L~~L~l~~n~---~~~~~~~~~~~l~~L~~L~L~~  205 (549)
T 2z81_A          170 SIRDIHHLTLHLSE---SAFLLEIFADILSSVRYLELRD  205 (549)
T ss_dssp             TCSEEEEEEEECSB---STTHHHHHHHSTTTBSEEEEES
T ss_pred             ccccCceEecccCc---ccccchhhHhhcccccEEEccC
Confidence            77777777777664   2223322 23455555555554

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.80  E-value=8.3e-21  Score=175.02  Aligned_cols=196  Identities=18%  Similarity=0.152  Sum_probs=131.2

Q ss_pred             cCCceeEEEcCCCCCC-CCcccc--cCcccccEEecCCCCCccccccccCC-----CCCcEEEcc-cCCccccc-hhhcc
Q 037494          170 NFKYLRVLNWGSAVLD-QFPPGL--ENLFLLKYLQLNIPTLKCLPLLICTL-----LNLETLEMP-AGYIDHSP-EGIWM  239 (394)
Q Consensus       170 ~l~~L~~L~l~~~~~~-~lp~~i--~~l~~L~~L~l~~~~l~~lp~~l~~l-----~~L~~L~l~-~~~l~~lp-~~i~~  239 (394)
                      .+++|++|++++|.+. .+|..+  +.+++|++|++++|.+..+|..++.+     ++|++|+++ | .+..+| ..++.
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~~~~~~  171 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFSCEQVRV  171 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESC-SCCCCCTTTCCC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCC-CCccchHHHhcc
Confidence            5777777777777776 566655  77777777777777777666666655     777777777 6 666665 56777


Q ss_pred             CccCcEEEeeCCCCCCC---CCCCC--CCCCcCceeCccccC-C---Ccc-hhcCCCCCCCeEEEeecCCccccchh-hh
Q 037494          240 MQKLMHLNFDSITLPAP---PKNYS--SSLKNLIFISALHPS-S---CTP-DILSRLPTVQTLRISGDLSHYHSGVS-KS  308 (394)
Q Consensus       240 l~~L~~L~l~~~~~~~~---~p~~l--~~l~~L~~L~~~~~~-~---~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~-~~  308 (394)
                      +++|++|+++ +|....   +|..+  +.+++|++|++.++. .   ..+ ..+..+++|+.|++++|.  .....| ..
T Consensus       172 l~~L~~L~Ls-~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~  248 (312)
T 1wwl_A          172 FPALSTLDLS-DNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS--LRDAAGAPS  248 (312)
T ss_dssp             CSSCCEEECC-SCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSC--CCSSCCCSC
T ss_pred             CCCCCEEECC-CCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCc--CCcccchhh
Confidence            7777777777 766322   23333  677777777777776 2   112 123456777888887775  333332 33


Q ss_pred             hcCCCCCcEEEecCCCCCCccCC-CCCCCCCCceEEEEecccCCCCCcccccCCCCCCeEEEecccccC
Q 037494          309 LCELHKLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFG  376 (394)
Q Consensus       309 l~~~~~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~  376 (394)
                      +..+++|+.|++++ +.+..+ | ++.   ++|+.|++++|+++..  +.+..+++|++|++++|.+++
T Consensus       249 ~~~l~~L~~L~Ls~-N~l~~i-p~~~~---~~L~~L~Ls~N~l~~~--p~~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          249 CDWPSQLNSLNLSF-TGLKQV-PKGLP---AKLSVLDLSYNRLDRN--PSPDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             CCCCTTCCEEECTT-SCCSSC-CSSCC---SEEEEEECCSSCCCSC--CCTTTSCEEEEEECTTCTTTC
T ss_pred             hhhcCCCCEEECCC-CccChh-hhhcc---CCceEEECCCCCCCCC--hhHhhCCCCCEEeccCCCCCC
Confidence            44567788888877 566666 6 552   5788888888877554  337777888888887777665

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.80  E-value=1.1e-19  Score=177.68  Aligned_cols=213  Identities=19%  Similarity=0.126  Sum_probs=149.7

Q ss_pred             CCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCcccccCcccccEEecCCCCCccccccccCCCCCc
Q 037494          142 SDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLE  221 (394)
Q Consensus       142 ~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~  221 (394)
                      .+++|+.|.+.++....    ..+..|..+++|++|++++|.+...++ ++.+++|++|++++|.+..+|..    ++|+
T Consensus        32 ~~~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~----~~L~  102 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQ----ISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVG----PSIE  102 (487)
T ss_dssp             TGGGCCEEECCSSCCCC----CCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEEC----TTCC
T ss_pred             cCCCccEEEeeCCcCCC----CCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCCC----CCcC
Confidence            34478888888877652    113444788888888888888775554 77888888888888887776643    6788


Q ss_pred             EEEcc-cCCccccchhhccCccCcEEEeeCCCCCCCC-CCCCCCCCcCceeCccccC--CCcchhcC-CCCCCCeEEEee
Q 037494          222 TLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITLPAPP-KNYSSSLKNLIFISALHPS--SCTPDILS-RLPTVQTLRISG  296 (394)
Q Consensus       222 ~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~-p~~l~~l~~L~~L~~~~~~--~~~~~~l~-~l~~L~~L~l~~  296 (394)
                      +|+++ | .+..+|..  .+++|++|+++ +|.+..+ |..++.+++|+.|++.++.  ...+..+. .+++|+.|++++
T Consensus       103 ~L~L~~N-~l~~~~~~--~l~~L~~L~L~-~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~  178 (487)
T 3oja_A          103 TLHAANN-NISRVSCS--RGQGKKNIYLA-NNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY  178 (487)
T ss_dssp             EEECCSS-CCCCEEEC--CCSSCEEEECC-SSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred             EEECcCC-cCCCCCcc--ccCCCCEEECC-CCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCC
Confidence            88888 7 77666643  46778888888 7775555 4457778888888888777  33445554 677888888888


Q ss_pred             cCCccccchhhhhcCCCCCcEEEecCCCCCCccCC-CCCCCCCCceEEEEecccCCCCCcccccCCCCCCeEEEeccccc
Q 037494          297 DLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYF  375 (394)
Q Consensus       297 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~  375 (394)
                      |.  .. .++ ....+++|+.|++++ +.+..+ | .+.. +++|+.|++++|.+.. .++.++.+++|+.|++++|.+.
T Consensus       179 N~--l~-~~~-~~~~l~~L~~L~Ls~-N~l~~~-~~~~~~-l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          179 NF--IY-DVK-GQVVFAKLKTLDLSS-NKLAFM-GPEFQS-AAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             SC--CC-EEE-CCCCCTTCCEEECCS-SCCCEE-CGGGGG-GTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBC
T ss_pred             Cc--cc-ccc-ccccCCCCCEEECCC-CCCCCC-CHhHcC-CCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCc
Confidence            75  22 223 233577888888887 667777 6 6666 7888888888888754 3345677788888888777665

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.79  E-value=7.2e-20  Score=169.09  Aligned_cols=211  Identities=16%  Similarity=0.052  Sum_probs=170.0

Q ss_pred             hHHhccCCceeEEEcCCCCCCCCc-ccccCcccccEEecCCCCCccccccccCCCCCcEEEcc-cCCccccchhhccCcc
Q 037494          165 ENFCENFKYLRVLNWGSAVLDQFP-PGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQK  242 (394)
Q Consensus       165 ~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~  242 (394)
                      ..++..+++|++|++++|.++.++ ..++.+++|++|++++|.+...++ ++.+++|++|+++ | .+..+|.    .++
T Consensus        27 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n-~l~~l~~----~~~  100 (317)
T 3o53_A           27 ASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN-YVQELLV----GPS  100 (317)
T ss_dssp             HHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSS-EEEEEEE----CTT
T ss_pred             HHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCC-ccccccC----CCC
Confidence            456678889999999999999775 689999999999999999988775 8999999999999 8 8887763    489


Q ss_pred             CcEEEeeCCCCCCCCCCCCCCCCcCceeCccccC-CC-cchhcCCCCCCCeEEEeecCCccccchhhhh-cCCCCCcEEE
Q 037494          243 LMHLNFDSITLPAPPKNYSSSLKNLIFISALHPS-SC-TPDILSRLPTVQTLRISGDLSHYHSGVSKSL-CELHKLECLK  319 (394)
Q Consensus       243 L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~-~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l-~~~~~L~~L~  319 (394)
                      |++|+++ +|.+..++.  ..+++|++|++.++. .. .+..++.+++|+.|++++|.  .....+..+ ..+++|+.|+
T Consensus       101 L~~L~l~-~n~l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~~l~~L~~L~  175 (317)
T 3o53_A          101 IETLHAA-NNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE--IDTVNFAELAASSDTLEHLN  175 (317)
T ss_dssp             CCEEECC-SSCCSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSC--CCEEEGGGGGGGTTTCCEEE
T ss_pred             cCEEECC-CCccCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCC--CCcccHHHHhhccCcCCEEE
Confidence            9999999 998777664  347899999999988 33 34467888999999999997  555445555 4789999999


Q ss_pred             ecCCCCCCccCCCCCCCCCCceEEEEecccCCCCCcccccCCCCCCeEEEecccccCceeEEeCCCCCcCCccc
Q 037494          320 LVNGSKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFGRKLACVGSGGFPELQVL  393 (394)
Q Consensus       320 l~~~~~L~~L~p~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~fp~L~~L  393 (394)
                      +++ +.+..+ |.... +++|+.|++++|++...+ +.+..+++|+.|++++|.+....  .. ...+++|+.|
T Consensus       176 L~~-N~l~~~-~~~~~-l~~L~~L~Ls~N~l~~l~-~~~~~l~~L~~L~L~~N~l~~l~--~~-~~~l~~L~~L  242 (317)
T 3o53_A          176 LQY-NFIYDV-KGQVV-FAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLVLIE--KA-LRFSQNLEHF  242 (317)
T ss_dssp             CTT-SCCCEE-ECCCC-CTTCCEEECCSSCCCEEC-GGGGGGTTCSEEECTTSCCCEEC--TT-CCCCTTCCEE
T ss_pred             CCC-CcCccc-ccccc-cccCCEEECCCCcCCcch-hhhcccCcccEEECcCCcccchh--hH-hhcCCCCCEE
Confidence            998 678777 63334 899999999999986543 45889999999999999877421  11 3356677665

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.79  E-value=4.4e-19  Score=160.17  Aligned_cols=170  Identities=19%  Similarity=0.234  Sum_probs=81.0

Q ss_pred             CCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCcccccCcccccEEecCCCCCcccccc-ccCCCCC
Q 037494          142 SDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLL-ICTLLNL  220 (394)
Q Consensus       142 ~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~-l~~l~~L  220 (394)
                      .+++++.|.+.++...     .++.+ ..+++|++|++++|.+..++ .++.+++|++|++++|.+..+|+. ++++++|
T Consensus        39 ~l~~L~~L~l~~~~i~-----~~~~l-~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  111 (272)
T 3rfs_A           39 ELNSIDQIIANNSDIK-----SVQGI-QYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNL  111 (272)
T ss_dssp             HHTTCCEEECTTSCCC-----CCTTG-GGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred             cccceeeeeeCCCCcc-----ccccc-ccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCC
Confidence            3445555555554443     22333 55555555555555555443 455555555555555555554433 3455555


Q ss_pred             cEEEcc-cCCccccchh-hccCccCcEEEeeCCCCCCCCCCC-CCCCCcCceeCccccC-CC-cchhcCCCCCCCeEEEe
Q 037494          221 ETLEMP-AGYIDHSPEG-IWMMQKLMHLNFDSITLPAPPKNY-SSSLKNLIFISALHPS-SC-TPDILSRLPTVQTLRIS  295 (394)
Q Consensus       221 ~~L~l~-~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~-l~~l~~L~~L~~~~~~-~~-~~~~l~~l~~L~~L~l~  295 (394)
                      ++|+++ | .+..+|.. ++.+++|++|+++ +|.+..+|+. ++.+++|++|++.++. .. .+..++.+++|+.|+++
T Consensus       112 ~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~  189 (272)
T 3rfs_A          112 KELVLVEN-QLQSLPDGVFDKLTNLTYLNLA-HNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLY  189 (272)
T ss_dssp             CEEECTTS-CCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CEEECCCC-cCCccCHHHhccCCCCCEEECC-CCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECC
Confidence            555555 5 44444433 4455555555555 5554444433 3445555555555444 11 11223444445555554


Q ss_pred             ecCCccccchhhhhcCCCCCcEEEecC
Q 037494          296 GDLSHYHSGVSKSLCELHKLECLKLVN  322 (394)
Q Consensus       296 ~~~~~~~~~~~~~l~~~~~L~~L~l~~  322 (394)
                      +|.  .....+..+..+++|+.|++++
T Consensus       190 ~N~--l~~~~~~~~~~l~~L~~L~l~~  214 (272)
T 3rfs_A          190 QNQ--LKSVPDGVFDRLTSLQYIWLHD  214 (272)
T ss_dssp             SSC--CSCCCTTTTTTCTTCCEEECCS
T ss_pred             CCc--CCccCHHHHhCCcCCCEEEccC
Confidence            443  2222222334444444444443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.79  E-value=6.6e-19  Score=179.37  Aligned_cols=197  Identities=16%  Similarity=0.133  Sum_probs=103.1

Q ss_pred             ceeEEEcCCCCCCCC-cccccCcccccEEecCCCCCc-ccc-ccccCCCCCcEEEcc-cCCccccc-hhhccCccCcEEE
Q 037494          173 YLRVLNWGSAVLDQF-PPGLENLFLLKYLQLNIPTLK-CLP-LLICTLLNLETLEMP-AGYIDHSP-EGIWMMQKLMHLN  247 (394)
Q Consensus       173 ~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~l~-~lp-~~l~~l~~L~~L~l~-~~~l~~lp-~~i~~l~~L~~L~  247 (394)
                      .|++|++++|.+..+ |..++.+++|++|++++|.+. .+| ..+..+++|++|+++ | .+..++ ..+..+++|+.|+
T Consensus       382 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~L~~L~  460 (680)
T 1ziw_A          382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN-KYLQLTRNSFALVPSLQRLM  460 (680)
T ss_dssp             CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSC-SEEECCTTTTTTCTTCCEEE
T ss_pred             cCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCC-CcceeChhhhhcCcccccch
Confidence            344444444444432 345556666666666666654 244 345566666666666 5 444332 3445555555555


Q ss_pred             eeCCCCC---CCCCCCCCCCCcCceeCccccC-C-CcchhcCCCCCCCeEEEeecCCccccc----hh----hhhcCCCC
Q 037494          248 FDSITLP---APPKNYSSSLKNLIFISALHPS-S-CTPDILSRLPTVQTLRISGDLSHYHSG----VS----KSLCELHK  314 (394)
Q Consensus       248 l~~~~~~---~~~p~~l~~l~~L~~L~~~~~~-~-~~~~~l~~l~~L~~L~l~~~~~~~~~~----~~----~~l~~~~~  314 (394)
                      ++ +|..   ...|..++.+++|+.|++.++. . ..+..+..+++|+.|++++|.  ....    +|    ..+..+++
T Consensus       461 l~-~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~~~~~~~~~l~~  537 (680)
T 1ziw_A          461 LR-RVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNN--LARLWKHANPGGPIYFLKGLSH  537 (680)
T ss_dssp             CT-TSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CGGGGSTTSTTSCCCTTTTCTT
T ss_pred             hc-cccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCC--ccccchhhccCCcchhhcCCCC
Confidence            55 5442   3445555666666666666555 2 222335556666666666654  1110    01    12455556


Q ss_pred             CcEEEecCCCCCCccCC--CCCCCCCCceEEEEecccCCCCCcccccCCCCCCeEEEecccccC
Q 037494          315 LECLKLVNGSKLSRMVL--SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFG  376 (394)
Q Consensus       315 L~~L~l~~~~~L~~L~p--~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~  376 (394)
                      |+.|++++ +.+..+ |  .+.. +++|+.|++++|+++..+...+..+++|+.|++++|.+++
T Consensus       538 L~~L~L~~-N~l~~i-~~~~~~~-l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~  598 (680)
T 1ziw_A          538 LHILNLES-NGFDEI-PVEVFKD-LFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS  598 (680)
T ss_dssp             CCEEECCS-SCCCCC-CTTTTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCB
T ss_pred             CCEEECCC-CCCCCC-CHHHccc-ccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCc
Confidence            66666655 445555 4  3555 5666666666666554444445556666666665555443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.79  E-value=1.7e-18  Score=173.08  Aligned_cols=220  Identities=17%  Similarity=0.111  Sum_probs=144.2

Q ss_pred             CCceEEEEEEeCCcchhhccCCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCcccccCcccccEE
Q 037494          121 LATVKRCFILEDLIEFISLEQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYL  200 (394)
Q Consensus       121 ~~~~r~L~l~~~~~~~~~~~~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L  200 (394)
                      +.+++.|.+..+....++.  .+++|++|.+.++...     .++.   .+++|++|++++|.++.+|.   .+.+|++|
T Consensus        60 ~~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~-----~lp~---~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L  126 (622)
T 3g06_A           60 PAHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLT-----SLPV---LPPGLLELSIFSNPLTHLPA---LPSGLCKL  126 (622)
T ss_dssp             CTTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCS-----CCCC---CCTTCCEEEECSCCCCCCCC---CCTTCCEE
T ss_pred             CCCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCC-----cCCC---CCCCCCEEECcCCcCCCCCC---CCCCcCEE
Confidence            4567888888666666555  5678888888887765     2332   66788888888888887776   56778888


Q ss_pred             ecCCCCCccccccccCCCCCcEEEcc-cCCccccchhhcc---C--------------ccCcEEEeeCCCCCCCCCCCCC
Q 037494          201 QLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWM---M--------------QKLMHLNFDSITLPAPPKNYSS  262 (394)
Q Consensus       201 ~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~---l--------------~~L~~L~l~~~~~~~~~p~~l~  262 (394)
                      ++++|.++.+|..   +++|++|+++ | .+..+|..+.+   +              ++|+.|+++ +|.+..+|..  
T Consensus       127 ~L~~N~l~~lp~~---l~~L~~L~Ls~N-~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls-~N~l~~l~~~--  199 (622)
T 3g06_A          127 WIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVS-DNQLASLPTL--  199 (622)
T ss_dssp             ECCSSCCSCCCCC---CTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECC-SSCCSCCCCC--
T ss_pred             ECCCCCCCcCCCC---CCCCCEEECcCC-cCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECC-CCCCCCCCCc--
Confidence            8888888877764   4678888888 7 77666643221   1              344444444 4443333322  


Q ss_pred             CCCcCceeCccccC-CCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCccCCCCCCCCCCce
Q 037494          263 SLKNLIFISALHPS-SCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVLSEYQFPPSLI  341 (394)
Q Consensus       263 ~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p~~~~~l~~L~  341 (394)
                       +++|+.|.+.+|. ...+.   .+++|+.|++++|.   ...+|   ..+++|+.|++++ +++..+ |.  . +++|+
T Consensus       200 -~~~L~~L~L~~N~l~~l~~---~~~~L~~L~Ls~N~---L~~lp---~~l~~L~~L~Ls~-N~L~~l-p~--~-~~~L~  264 (622)
T 3g06_A          200 -PSELYKLWAYNNRLTSLPA---LPSGLKELIVSGNR---LTSLP---VLPSELKELMVSG-NRLTSL-PM--L-PSGLL  264 (622)
T ss_dssp             -CTTCCEEECCSSCCSSCCC---CCTTCCEEECCSSC---CSCCC---CCCTTCCEEECCS-SCCSCC-CC--C-CTTCC
T ss_pred             -cchhhEEECcCCcccccCC---CCCCCCEEEccCCc---cCcCC---CCCCcCcEEECCC-CCCCcC-Cc--c-cccCc
Confidence             2344444444443 22221   23567777777764   33344   3457788888887 567766 54  3 67899


Q ss_pred             EEEEecccCCCCCcccccCCCCCCeEEEecccccC
Q 037494          342 QLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFG  376 (394)
Q Consensus       342 ~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~  376 (394)
                      .|+|++|+++ ..++.+.++++|+.|++++|.+.+
T Consensus       265 ~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~  298 (622)
T 3g06_A          265 SLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSE  298 (622)
T ss_dssp             EEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCH
T ss_pred             EEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCC
Confidence            9999999987 345668899999999998887654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.79  E-value=1.1e-19  Score=177.49  Aligned_cols=230  Identities=11%  Similarity=0.009  Sum_probs=147.3

Q ss_pred             CCceEEEEEEeCCcchhhc--cCCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCcccccCccccc
Q 037494          121 LATVKRCFILEDLIEFISL--EQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLK  198 (394)
Q Consensus       121 ~~~~r~L~l~~~~~~~~~~--~~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~  198 (394)
                      +.+++.|.+..+....++.  ...+++|++|.+.++....     .+++ ..+++|++|++++|.+..+|.    .++|+
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-----~~~l-~~l~~L~~L~Ls~N~l~~l~~----~~~L~  102 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE-----TLDL-ESLSTLRTLDLNNNYVQELLV----GPSIE  102 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEE-----EEEC-TTCTTCCEEECCSSEEEEEEE----CTTCC
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCC-----Cccc-ccCCCCCEEEecCCcCCCCCC----CCCcC
Confidence            3367777777555555442  2567777777777776642     2223 777777777777777665553    26777


Q ss_pred             EEecCCCCCccccccccCCCCCcEEEcc-cCCcccc-chhhccCccCcEEEeeCCCCCCC-CCCCCC-CCCcCceeCccc
Q 037494          199 YLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHS-PEGIWMMQKLMHLNFDSITLPAP-PKNYSS-SLKNLIFISALH  274 (394)
Q Consensus       199 ~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~-~p~~l~-~l~~L~~L~~~~  274 (394)
                      +|++++|.+..+|..  .+++|++|+++ | .+..+ |..++.+++|++|+++ +|.+.. .|..+. .+++|++|++.+
T Consensus       103 ~L~L~~N~l~~~~~~--~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~l~~~l~~L~~L~Ls~  178 (487)
T 3oja_A          103 TLHAANNNISRVSCS--RGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLK-LNEIDTVNFAELAASSDTLEHLNLQY  178 (487)
T ss_dssp             EEECCSSCCCCEEEC--CCSSCEEEECCSS-CCCSGGGBCGGGGSSEEEEECT-TSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred             EEECcCCcCCCCCcc--ccCCCCEEECCCC-CCCCCCchhhcCCCCCCEEECC-CCCCCCcChHHHhhhCCcccEEecCC
Confidence            777777777766543  45677777777 6 66555 3456777777777777 776444 334443 577777777777


Q ss_pred             cCCCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCccCC-CCCCCCCCceEEEEecccCCCC
Q 037494          275 PSSCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTELMED  353 (394)
Q Consensus       275 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l~~~  353 (394)
                      |..........+++|+.|++++|.   ...+|..+..+++|+.|++++ +.+..+ | ++.. +++|+.|++++|.+.+.
T Consensus       179 N~l~~~~~~~~l~~L~~L~Ls~N~---l~~~~~~~~~l~~L~~L~Ls~-N~l~~l-p~~l~~-l~~L~~L~l~~N~l~c~  252 (487)
T 3oja_A          179 NFIYDVKGQVVFAKLKTLDLSSNK---LAFMGPEFQSAAGVTWISLRN-NKLVLI-EKALRF-SQNLEHFDLRGNGFHCG  252 (487)
T ss_dssp             SCCCEEECCCCCTTCCEEECCSSC---CCEECGGGGGGTTCSEEECTT-SCCCEE-CTTCCC-CTTCCEEECTTCCBCHH
T ss_pred             CccccccccccCCCCCEEECCCCC---CCCCCHhHcCCCCccEEEecC-CcCccc-chhhcc-CCCCCEEEcCCCCCcCc
Confidence            762222344457777777777774   334555566777777777777 566666 6 6666 77777777777776532


Q ss_pred             C-cccccCCCCCCeEEEe
Q 037494          354 P-MPMLERLPRLQVMKLK  370 (394)
Q Consensus       354 ~-~~~l~~l~~L~~L~l~  370 (394)
                      . +..+..++.|+.++++
T Consensus       253 ~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          253 TLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             HHHHHHTTCHHHHHHHHH
T ss_pred             chHHHHHhCCCCcEEecc
Confidence            2 2345666666666663

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.78  E-value=4.4e-19  Score=160.16  Aligned_cols=195  Identities=17%  Similarity=0.170  Sum_probs=161.4

Q ss_pred             ccCCceeEEEcCCCCCCCCcccccCcccccEEecCCCCCccccccccCCCCCcEEEcc-cCCccccchh-hccCccCcEE
Q 037494          169 ENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEG-IWMMQKLMHL  246 (394)
Q Consensus       169 ~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~-i~~l~~L~~L  246 (394)
                      ..+++|+.|+++++.+..++ .++.+++|++|++++|.+..++ .++.+++|++|+++ | .+..+|.. ++.+++|++|
T Consensus        38 ~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L  114 (272)
T 3rfs_A           38 NELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKEL  114 (272)
T ss_dssp             HHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEE
T ss_pred             ccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCC-ccCccChhHhcCCcCCCEE
Confidence            66788999999999988765 4889999999999999998875 78899999999999 8 88888764 6889999999


Q ss_pred             EeeCCCCCCCCCCC-CCCCCcCceeCccccC-CCc-chhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCC
Q 037494          247 NFDSITLPAPPKNY-SSSLKNLIFISALHPS-SCT-PDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNG  323 (394)
Q Consensus       247 ~l~~~~~~~~~p~~-l~~l~~L~~L~~~~~~-~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~  323 (394)
                      +++ +|.+..+|+. ++.+++|++|++.++. ... +..++.+++|+.|++++|.  .....+..+..+++|+.|++++ 
T Consensus       115 ~L~-~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~L~~-  190 (272)
T 3rfs_A          115 VLV-ENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ--LQSLPEGVFDKLTQLKDLRLYQ-  190 (272)
T ss_dssp             ECT-TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCS-
T ss_pred             ECC-CCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC--cCccCHHHhcCCccCCEEECCC-
Confidence            999 9997777765 7899999999999988 333 3447889999999999996  4444445578899999999998 


Q ss_pred             CCCCccCC-CCCCCCCCceEEEEecccCCCCCcccccCCCCCCeEEEecccccCce
Q 037494          324 SKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFGRK  378 (394)
Q Consensus       324 ~~L~~L~p-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~  378 (394)
                      +.+..+.| .+.. +++|+.|++++|.+.       +.+|+|+.|+++.|.+.+..
T Consensus       191 N~l~~~~~~~~~~-l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g~i  238 (272)
T 3rfs_A          191 NQLKSVPDGVFDR-LTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVV  238 (272)
T ss_dssp             SCCSCCCTTTTTT-CTTCCEEECCSSCBC-------CCTTTTHHHHHHHHHTGGGB
T ss_pred             CcCCccCHHHHhC-CcCCCEEEccCCCcc-------ccCcHHHHHHHHHHhCCCcc
Confidence            66777733 6788 999999999999864       34678888888777777654

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.78  E-value=7.5e-19  Score=177.10  Aligned_cols=126  Identities=17%  Similarity=0.097  Sum_probs=92.0

Q ss_pred             CCceEEEEEEeCCcchhhcc--CCCCCccEEEEecCCCccchhcch-hHHhccCCceeEEEcCCCCCCCCc-ccccCccc
Q 037494          121 LATVKRCFILEDLIEFISLE--QSDMYLQSFLNHSSESDHLALIDC-ENFCENFKYLRVLNWGSAVLDQFP-PGLENLFL  196 (394)
Q Consensus       121 ~~~~r~L~l~~~~~~~~~~~--~~~~~lr~L~l~~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~  196 (394)
                      +..+++|.+..+....++..  ..+++|+.|.+.++.+.     .+ ++.|.++++|++|++++|.++.+| ..++++++
T Consensus        51 p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-----~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~  125 (635)
T 4g8a_A           51 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-----TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS  125 (635)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-----EECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTT
T ss_pred             CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-----CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCC
Confidence            55778888887777766543  67888888888888775     33 444478888888888888888776 45678888


Q ss_pred             ccEEecCCCCCccccc-cccCCCCCcEEEcc-cCCccc--cchhhccCccCcEEEeeCCCC
Q 037494          197 LKYLQLNIPTLKCLPL-LICTLLNLETLEMP-AGYIDH--SPEGIWMMQKLMHLNFDSITL  253 (394)
Q Consensus       197 L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~-~~~l~~--lp~~i~~l~~L~~L~l~~~~~  253 (394)
                      |++|++++|.++.+|+ .++++++|++|+++ | .+..  +|..++.+++|++|+++ +|.
T Consensus       126 L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~-~N~  184 (635)
T 4g8a_A          126 LQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLS-SNK  184 (635)
T ss_dssp             CCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECC-SSC
T ss_pred             CCEEECCCCcCCCCChhhhhcCcccCeeccccC-ccccCCCchhhccchhhhhhccc-Ccc
Confidence            8888888888877765 36778888888888 6 5543  45667777777777776 543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.77  E-value=5.9e-18  Score=152.57  Aligned_cols=196  Identities=23%  Similarity=0.204  Sum_probs=152.1

Q ss_pred             CccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCc-ccccCcccccEEecCCCCCccccccc-cCCCCCcE
Q 037494          145 YLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFP-PGLENLFLLKYLQLNIPTLKCLPLLI-CTLLNLET  222 (394)
Q Consensus       145 ~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~l~~lp~~l-~~l~~L~~  222 (394)
                      ..+++.+.++...     .+|.-  -.+.++.|++++|.+..++ ..++.+++|++|++++|.+..+|..+ ..+++|++
T Consensus        17 ~~~~l~~~~~~l~-----~ip~~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~   89 (270)
T 2o6q_A           17 NKNSVDCSSKKLT-----AIPSN--IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLET   89 (270)
T ss_dssp             TTTEEECTTSCCS-----SCCSC--CCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCE
T ss_pred             CCCEEEccCCCCC-----ccCCC--CCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCE
Confidence            4566766666554     23321  1257889999999988776 47888999999999999998888764 77899999


Q ss_pred             EEcc-cCCccccchh-hccCccCcEEEeeCCCCCCCCCCC-CCCCCcCceeCccccC-CCcc-hhcCCCCCCCeEEEeec
Q 037494          223 LEMP-AGYIDHSPEG-IWMMQKLMHLNFDSITLPAPPKNY-SSSLKNLIFISALHPS-SCTP-DILSRLPTVQTLRISGD  297 (394)
Q Consensus       223 L~l~-~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~-l~~l~~L~~L~~~~~~-~~~~-~~l~~l~~L~~L~l~~~  297 (394)
                      |+++ | .+..+|.. +..+++|++|+++ +|.+..+++. ++.+++|++|++.++. ...+ ..++.+++|+.|++++|
T Consensus        90 L~l~~n-~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n  167 (270)
T 2o6q_A           90 LWVTDN-KLQALPIGVFDQLVNLAELRLD-RNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNN  167 (270)
T ss_dssp             EECCSS-CCCCCCTTTTTTCSSCCEEECC-SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             EECCCC-cCCcCCHhHcccccCCCEEECC-CCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCC
Confidence            9999 8 88888754 5788999999999 8887777654 6889999999998887 3333 34788899999999988


Q ss_pred             CCccccchhhhhcCCCCCcEEEecCCCCCCccCC-CCCCCCCCceEEEEecccCCCC
Q 037494          298 LSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTELMED  353 (394)
Q Consensus       298 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l~~~  353 (394)
                      .  .....+..+..+++|+.|++++ +.+..+.+ .+.. +++|+.|++++|.+.+.
T Consensus       168 ~--l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~-l~~L~~L~l~~N~~~c~  220 (270)
T 2o6q_A          168 Q--LKRVPEGAFDKLTELKTLKLDN-NQLKRVPEGAFDS-LEKLKMLQLQENPWDCT  220 (270)
T ss_dssp             C--CSCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTT-CTTCCEEECCSSCBCCS
T ss_pred             c--CcEeChhHhccCCCcCEEECCC-CcCCcCCHHHhcc-ccCCCEEEecCCCeeCC
Confidence            5  4433345678889999999998 67888823 5777 89999999999987664

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.77  E-value=4.1e-18  Score=155.21  Aligned_cols=195  Identities=18%  Similarity=0.116  Sum_probs=140.1

Q ss_pred             ccCCceeEEEcCCCCCCCCcccccCcccccEEecCCCCCcccc-ccccCCCCCcEEEcc-cCCccccchhhccCccCcEE
Q 037494          169 ENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLP-LLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHL  246 (394)
Q Consensus       169 ~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp-~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L  246 (394)
                      .++++++.+++++++++.+|..+.  ++++.|++++|.+..++ ..+..+++|++|+++ | .+..+|.. +.+++|++|
T Consensus         7 ~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~~L   82 (290)
T 1p9a_G            7 SKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLGTL   82 (290)
T ss_dssp             ECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCCEE
T ss_pred             cccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCCEE
Confidence            667778888888888877776664  57788888888777654 457778888888888 7 77777654 677888888


Q ss_pred             EeeCCCCCCCCCCCCCCCCcCceeCccccC-CCc-chhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCC
Q 037494          247 NFDSITLPAPPKNYSSSLKNLIFISALHPS-SCT-PDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGS  324 (394)
Q Consensus       247 ~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~-~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~  324 (394)
                      +++ +|.+..+|..++.+++|+.|++.++. ... +..++.+++|+.|++++|.  .....+..+..+++|+.|++++ +
T Consensus        83 ~Ls-~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~L~~-N  158 (290)
T 1p9a_G           83 DLS-HNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE--LKTLPPGLLTPTPKLEKLSLAN-N  158 (290)
T ss_dssp             ECC-SSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC--CCCCCTTTTTTCTTCCEEECTT-S
T ss_pred             ECC-CCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC--CCccChhhcccccCCCEEECCC-C
Confidence            888 77777777777778888888887777 333 3557777888888888775  3333334456777888888877 6


Q ss_pred             CCCccCC--CCCCCCCCceEEEEecccCCCCCcccccCCCCCCeEEEecccc
Q 037494          325 KLSRMVL--SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSY  374 (394)
Q Consensus       325 ~L~~L~p--~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~~  374 (394)
                      ++..+ |  .+.. +++|+.|+|++|+++. .+..+..+++|+.|++++|.+
T Consensus       159 ~l~~l-~~~~~~~-l~~L~~L~L~~N~l~~-ip~~~~~~~~L~~l~L~~Np~  207 (290)
T 1p9a_G          159 NLTEL-PAGLLNG-LENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGNPW  207 (290)
T ss_dssp             CCSCC-CTTTTTT-CTTCCEEECCSSCCCC-CCTTTTTTCCCSEEECCSCCB
T ss_pred             cCCcc-CHHHhcC-cCCCCEEECCCCcCCc-cChhhcccccCCeEEeCCCCc
Confidence            67777 5  4566 7788888888887753 334455667788888877654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.77  E-value=2e-19  Score=165.77  Aligned_cols=209  Identities=19%  Similarity=0.141  Sum_probs=166.1

Q ss_pred             eeEEEcCCCCCC--CCccccc-------CcccccEEecCCCCCc-cccccc--cCCCCCcEEEcc-cCCccccchhhccC
Q 037494          174 LRVLNWGSAVLD--QFPPGLE-------NLFLLKYLQLNIPTLK-CLPLLI--CTLLNLETLEMP-AGYIDHSPEGIWMM  240 (394)
Q Consensus       174 L~~L~l~~~~~~--~lp~~i~-------~l~~L~~L~l~~~~l~-~lp~~l--~~l~~L~~L~l~-~~~l~~lp~~i~~l  240 (394)
                      |++|+++++.+.  .+|..+.       ++++|++|++++|.+. .+|..+  +.+++|++|+++ | .+..+|..++.+
T Consensus        65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l  143 (312)
T 1wwl_A           65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV-SWATRDAWLAEL  143 (312)
T ss_dssp             HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESC-BCSSSSSHHHHH
T ss_pred             HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCC-CCcchhHHHHHH
Confidence            888899998885  5676665       7999999999999998 688876  899999999999 8 888888888877


Q ss_pred             -----ccCcEEEeeCCCCCCCCC-CCCCCCCcCceeCccccC-CC---cchhc--CCCCCCCeEEEeecCCccccchh-h
Q 037494          241 -----QKLMHLNFDSITLPAPPK-NYSSSLKNLIFISALHPS-SC---TPDIL--SRLPTVQTLRISGDLSHYHSGVS-K  307 (394)
Q Consensus       241 -----~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~~~~~~-~~---~~~~l--~~l~~L~~L~l~~~~~~~~~~~~-~  307 (394)
                           ++|++|+++ +|.+..++ ..++.+++|++|++.++. ..   .+..+  +.+++|+.|++++|.-.....++ .
T Consensus       144 ~~~~~~~L~~L~L~-~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  222 (312)
T 1wwl_A          144 QQWLKPGLKVLSIA-QAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSA  222 (312)
T ss_dssp             HTTCCTTCCEEEEE-SCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHH
T ss_pred             HHhhcCCCcEEEee-CCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHH
Confidence                 999999999 99977776 679999999999999987 22   34455  88999999999999622112344 3


Q ss_pred             hhcCCCCCcEEEecCCCCCCccCC--CCCCCCCCceEEEEecccCCCCCcccccCCCCCCeEEEecccccCceeEEeCCC
Q 037494          308 SLCELHKLECLKLVNGSKLSRMVL--SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFGRKLACVGSG  385 (394)
Q Consensus       308 ~l~~~~~L~~L~l~~~~~L~~L~p--~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~  385 (394)
                      .+..+++|+.|++++ +.+....|  .+.. +++|+.|++++|+++. .+..+.  ++|++|++++|.+.+...    ..
T Consensus       223 ~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~~-l~~L~~L~Ls~N~l~~-ip~~~~--~~L~~L~Ls~N~l~~~p~----~~  293 (312)
T 1wwl_A          223 LAAARVQLQGLDLSH-NSLRDAAGAPSCDW-PSQLNSLNLSFTGLKQ-VPKGLP--AKLSVLDLSYNRLDRNPS----PD  293 (312)
T ss_dssp             HHHTTCCCSEEECTT-SCCCSSCCCSCCCC-CTTCCEEECTTSCCSS-CCSSCC--SEEEEEECCSSCCCSCCC----TT
T ss_pred             HHhcCCCCCEEECCC-CcCCcccchhhhhh-cCCCCEEECCCCccCh-hhhhcc--CCceEEECCCCCCCCChh----Hh
Confidence            446789999999998 66766423  4455 8999999999999863 333343  899999999999887632    34


Q ss_pred             CCcCCccc
Q 037494          386 GFPELQVL  393 (394)
Q Consensus       386 ~fp~L~~L  393 (394)
                      .+++|+.|
T Consensus       294 ~l~~L~~L  301 (312)
T 1wwl_A          294 ELPQVGNL  301 (312)
T ss_dssp             TSCEEEEE
T ss_pred             hCCCCCEE
Confidence            67777765

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.77  E-value=1.5e-18  Score=153.58  Aligned_cols=189  Identities=15%  Similarity=0.106  Sum_probs=125.0

Q ss_pred             ceeEEEcCCCCCCCCcc-cccCcccccEEecCCCC-Cccccc-cccCCCCCcEEEcc-cCCccccch-hhccCccCcEEE
Q 037494          173 YLRVLNWGSAVLDQFPP-GLENLFLLKYLQLNIPT-LKCLPL-LICTLLNLETLEMP-AGYIDHSPE-GIWMMQKLMHLN  247 (394)
Q Consensus       173 ~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~-l~~lp~-~l~~l~~L~~L~l~-~~~l~~lp~-~i~~l~~L~~L~  247 (394)
                      .|++|++++|.++.+|+ .++.+++|++|++++|. ++.+|+ .++++++|++|+++ |+.+..+|. .+..+++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            67777777777776654 56677777777777775 766664 46677777777777 456776664 466777777777


Q ss_pred             eeCCCCCCCCCCCCCCCCcCc---eeCcccc-C-CCcc-hhcCCCCCCC-eEEEeecCCccccchhhhhcCCCCCcEEEe
Q 037494          248 FDSITLPAPPKNYSSSLKNLI---FISALHP-S-SCTP-DILSRLPTVQ-TLRISGDLSHYHSGVSKSLCELHKLECLKL  320 (394)
Q Consensus       248 l~~~~~~~~~p~~l~~l~~L~---~L~~~~~-~-~~~~-~~l~~l~~L~-~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l  320 (394)
                      ++ +|.+..+|. ++.+++|+   .|++.++ . ...+ ..+..+++|+ .|+++++.  . ..+|......++|+.|++
T Consensus       112 l~-~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~--l-~~i~~~~~~~~~L~~L~L  186 (239)
T 2xwt_C          112 IF-NTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG--F-TSVQGYAFNGTKLDAVYL  186 (239)
T ss_dssp             EE-EECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC--C-CEECTTTTTTCEEEEEEC
T ss_pred             CC-CCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC--C-cccCHhhcCCCCCCEEEc
Confidence            77 777666665 66666666   7777666 4 2222 3366677777 77777774  2 344443333367888888


Q ss_pred             cCCCCCCccCC-CCCCCC-CCceEEEEecccCCCCCcccccCCCCCCeEEEe
Q 037494          321 VNGSKLSRMVL-SEYQFP-PSLIQLSLSNTELMEDPMPMLERLPRLQVMKLK  370 (394)
Q Consensus       321 ~~~~~L~~L~p-~~~~~l-~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~  370 (394)
                      +++++++.+.+ .+.. + ++|+.|++++|+++..+..   .+++|+.|+++
T Consensus       187 ~~n~~l~~i~~~~~~~-l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~  234 (239)
T 2xwt_C          187 NKNKYLTVIDKDAFGG-VYSGPSLLDVSQTSVTALPSK---GLEHLKELIAR  234 (239)
T ss_dssp             TTCTTCCEECTTTTTT-CSBCCSEEECTTCCCCCCCCT---TCTTCSEEECT
T ss_pred             CCCCCcccCCHHHhhc-cccCCcEEECCCCccccCChh---HhccCceeecc
Confidence            87445777723 5666 7 7888888888887543322   57778888874

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.77  E-value=1.2e-18  Score=157.52  Aligned_cols=197  Identities=17%  Similarity=0.086  Sum_probs=158.7

Q ss_pred             CCccEEEEecCCCccchhcch-hHHhccCCceeEEEcCCCCCCCCc-ccccCcccccEEecCCCCCcccc-ccccCCCCC
Q 037494          144 MYLQSFLNHSSESDHLALIDC-ENFCENFKYLRVLNWGSAVLDQFP-PGLENLFLLKYLQLNIPTLKCLP-LLICTLLNL  220 (394)
Q Consensus       144 ~~lr~L~l~~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~l~~lp-~~l~~l~~L  220 (394)
                      +.++.|.+.++...     .+ +..|.++++|++|++++|.+..++ ..++.+++|++|++++|.+..++ ..++++++|
T Consensus        28 ~~l~~L~ls~n~l~-----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  102 (276)
T 2z62_A           28 FSTKNLDLSFNPLR-----HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL  102 (276)
T ss_dssp             TTCCEEECTTCCCC-----EECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred             CCccEEECCCCccc-----ccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccc
Confidence            57999999998876     33 324489999999999999998776 47899999999999999998876 568899999


Q ss_pred             cEEEcc-cCCccccch-hhccCccCcEEEeeCCCCCCC--CCCCCCCCCcCceeCccccC-CC-cchhcCCCCCCC----
Q 037494          221 ETLEMP-AGYIDHSPE-GIWMMQKLMHLNFDSITLPAP--PKNYSSSLKNLIFISALHPS-SC-TPDILSRLPTVQ----  290 (394)
Q Consensus       221 ~~L~l~-~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~--~p~~l~~l~~L~~L~~~~~~-~~-~~~~l~~l~~L~----  290 (394)
                      ++|+++ | .+..++. .++.+++|++|+++ +|.+..  +|..++.+++|++|++.++. .. .+..+..+++|+    
T Consensus       103 ~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l  180 (276)
T 2z62_A          103 QKLVAVET-NLASLENFPIGHLKTLKELNVA-HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL  180 (276)
T ss_dssp             CEEECTTS-CCCCSTTCCCTTCTTCCEEECC-SSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCE
T ss_pred             cEEECCCC-CccccCchhcccCCCCCEEECc-CCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccce
Confidence            999999 8 7877765 68899999999999 998655  67889999999999999987 22 223444444444    


Q ss_pred             eEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCccCC--CCCCCCCCceEEEEecccCCCC
Q 037494          291 TLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVL--SEYQFPPSLIQLSLSNTELMED  353 (394)
Q Consensus       291 ~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p--~~~~~l~~L~~L~L~~~~l~~~  353 (394)
                      .|+++++.   ...++.......+|+.|++++ +.+..+ |  .+.. +++|+.|++++|++.+.
T Consensus       181 ~L~ls~n~---l~~~~~~~~~~~~L~~L~L~~-n~l~~~-~~~~~~~-l~~L~~L~l~~N~~~c~  239 (276)
T 2z62_A          181 SLDLSLNP---MNFIQPGAFKEIRLKELALDT-NQLKSV-PDGIFDR-LTSLQKIWLHTNPWDCS  239 (276)
T ss_dssp             EEECCSSC---CCEECTTSSCSCCEEEEECCS-SCCSCC-CTTTTTT-CCSCCEEECCSSCBCCC
T ss_pred             eeecCCCc---ccccCccccCCCcccEEECCC-Cceeec-CHhHhcc-cccccEEEccCCccccc
Confidence            88998885   334444444455899999998 678888 6  5677 99999999999998654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.77  E-value=8e-19  Score=161.56  Aligned_cols=224  Identities=15%  Similarity=0.148  Sum_probs=170.5

Q ss_pred             CCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCC-CCcccc--cCcccccEEecCCCCCccc-c----cc
Q 037494          142 SDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLD-QFPPGL--ENLFLLKYLQLNIPTLKCL-P----LL  213 (394)
Q Consensus       142 ~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~-~lp~~i--~~l~~L~~L~l~~~~l~~l-p----~~  213 (394)
                      +...++.+.+.+..........+..+ ..+++|++|++++|.+. ..|..+  +.+++|++|++++|.+... |    ..
T Consensus        62 ~~~~l~~l~l~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~  140 (310)
T 4glp_A           62 KALRVRRLTVGAAQVPAQLLVGALRV-LAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQ  140 (310)
T ss_dssp             SSCCCCEEEECSCCCBHHHHHHHHHH-HHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHH
T ss_pred             hhcceeEEEEeCCcCCHHHHHHHHHh-cccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHH
Confidence            34457778887776652111122233 34577999999999987 556666  8999999999999998752 2    33


Q ss_pred             ccCCCCCcEEEcc-cCCccccc-hhhccCccCcEEEeeCCCCCCC---CC--CCCCCCCcCceeCccccC-CCcch----
Q 037494          214 ICTLLNLETLEMP-AGYIDHSP-EGIWMMQKLMHLNFDSITLPAP---PK--NYSSSLKNLIFISALHPS-SCTPD----  281 (394)
Q Consensus       214 l~~l~~L~~L~l~-~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~---~p--~~l~~l~~L~~L~~~~~~-~~~~~----  281 (394)
                      +..+++|++|+++ | .+..+| ..++.+++|++|+++ +|.+..   ++  ..++.+++|++|.+.+|. ...+.    
T Consensus       141 ~~~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~  218 (310)
T 4glp_A          141 QWLKPGLKVLSIAQA-HSPAFSCEQVRAFPALTSLDLS-DNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAA  218 (310)
T ss_dssp             TTBCSCCCEEEEECC-SSCCCCTTSCCCCTTCCEEECC-SCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHH
T ss_pred             hhhccCCCEEEeeCC-CcchhhHHHhccCCCCCEEECC-CCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHH
Confidence            4579999999999 8 777776 578899999999999 887432   32  334789999999999988 32232    


Q ss_pred             hcCCCCCCCeEEEeecCCccccchhhhhcCC---CCCcEEEecCCCCCCccCC-CCCCCCCCceEEEEecccCCCCCccc
Q 037494          282 ILSRLPTVQTLRISGDLSHYHSGVSKSLCEL---HKLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPM  357 (394)
Q Consensus       282 ~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~---~~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l~~~~~~~  357 (394)
                      -++.+++|+.|++++|.  .....|..+..+   ++|+.|++++ +.+..+ | .+   +++|+.|+|++|+++..  +.
T Consensus       219 l~~~l~~L~~L~Ls~N~--l~~~~p~~~~~~~~~~~L~~L~Ls~-N~l~~l-p~~~---~~~L~~L~Ls~N~l~~~--~~  289 (310)
T 4glp_A          219 LAAAGVQPHSLDLSHNS--LRATVNPSAPRCMWSSALNSLNLSF-AGLEQV-PKGL---PAKLRVLDLSSNRLNRA--PQ  289 (310)
T ss_dssp             HHHHTCCCSSEECTTSC--CCCCCCSCCSSCCCCTTCCCEECCS-SCCCSC-CSCC---CSCCSCEECCSCCCCSC--CC
T ss_pred             HHhcCCCCCEEECCCCC--CCccchhhHHhccCcCcCCEEECCC-CCCCch-hhhh---cCCCCEEECCCCcCCCC--ch
Confidence            24678999999999997  555556666665   6999999998 778888 7 65   47999999999998653  44


Q ss_pred             ccCCCCCCeEEEecccccCc
Q 037494          358 LERLPRLQVMKLKRNSYFGR  377 (394)
Q Consensus       358 l~~l~~L~~L~l~~n~~~~~  377 (394)
                      +..+++|+.|++++|.+++.
T Consensus       290 ~~~l~~L~~L~L~~N~l~~~  309 (310)
T 4glp_A          290 PDELPEVDNLTLDGNPFLVP  309 (310)
T ss_dssp             TTSCCCCSCEECSSTTTSCC
T ss_pred             hhhCCCccEEECcCCCCCCC
Confidence            78899999999999988753

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.77  E-value=2.6e-18  Score=152.04  Aligned_cols=195  Identities=16%  Similarity=0.244  Sum_probs=159.4

Q ss_pred             CCCCcccccCcccccEEecCCCCCccccc-cccCCCCCcEEEcc-cCCccccch-hhccCccCcEEEeeCC-CCCCCCCC
Q 037494          184 LDQFPPGLENLFLLKYLQLNIPTLKCLPL-LICTLLNLETLEMP-AGYIDHSPE-GIWMMQKLMHLNFDSI-TLPAPPKN  259 (394)
Q Consensus       184 ~~~lp~~i~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~-~~~l~~lp~-~i~~l~~L~~L~l~~~-~~~~~~p~  259 (394)
                      ++.+|. +..  +|++|++++|.++.+|+ .++.+++|++|+++ |..+..+|. .+..+++|++|+++ + +.+..+|+
T Consensus        23 l~~ip~-~~~--~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~-~~n~l~~i~~   98 (239)
T 2xwt_C           23 IQRIPS-LPP--STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIR-NTRNLTYIDP   98 (239)
T ss_dssp             CSSCCC-CCT--TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEE-EETTCCEECT
T ss_pred             ccccCC-CCC--cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECC-CCCCeeEcCH
Confidence            677777 443  89999999999999886 68899999999999 833888886 68899999999999 8 77777775


Q ss_pred             -CCCCCCcCceeCccccC-CCcchhcCCCCCCC---eEEEeecCCccccchh-hhhcCCCCCc-EEEecCCCCCCccCC-
Q 037494          260 -YSSSLKNLIFISALHPS-SCTPDILSRLPTVQ---TLRISGDLSHYHSGVS-KSLCELHKLE-CLKLVNGSKLSRMVL-  331 (394)
Q Consensus       260 -~l~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~---~L~l~~~~~~~~~~~~-~~l~~~~~L~-~L~l~~~~~L~~L~p-  331 (394)
                       .++.+++|++|++.++. ...+. ++.+++|+   .|++++|.  ....++ ..+..+++|+ .|++++ +.+..+ | 
T Consensus        99 ~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~--~l~~i~~~~~~~l~~L~~~L~l~~-n~l~~i-~~  173 (239)
T 2xwt_C           99 DALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNP--YMTSIPVNAFQGLCNETLTLKLYN-NGFTSV-QG  173 (239)
T ss_dssp             TSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCT--TCCEECTTTTTTTBSSEEEEECCS-CCCCEE-CT
T ss_pred             HHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCc--chhhcCcccccchhcceeEEEcCC-CCCccc-CH
Confidence             57899999999999988 44444 88888888   99999983  233343 4688899999 999998 778888 7 


Q ss_pred             CCCCCCCCceEEEEeccc-CCCCCcccccCC-CCCCeEEEecccccCceeEEeCCCCCcCCccc
Q 037494          332 SEYQFPPSLIQLSLSNTE-LMEDPMPMLERL-PRLQVMKLKRNSYFGRKLACVGSGGFPELQVL  393 (394)
Q Consensus       332 ~~~~~l~~L~~L~L~~~~-l~~~~~~~l~~l-~~L~~L~l~~n~~~~~~~~~~~~~~fp~L~~L  393 (394)
                      .... .++|+.|++++|+ ++..+...+..+ ++|+.|++++|.+....     ...|++|+.|
T Consensus       174 ~~~~-~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~-----~~~~~~L~~L  231 (239)
T 2xwt_C          174 YAFN-GTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALP-----SKGLEHLKEL  231 (239)
T ss_dssp             TTTT-TCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCC-----CTTCTTCSEE
T ss_pred             hhcC-CCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCC-----hhHhccCcee
Confidence            5545 5799999999995 876666678899 99999999999887644     4578888876

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.76  E-value=9e-18  Score=162.54  Aligned_cols=156  Identities=19%  Similarity=0.170  Sum_probs=74.6

Q ss_pred             CCceEEEEEEeCCcchhhccCCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCcccccCcccccEE
Q 037494          121 LATVKRCFILEDLIEFISLEQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYL  200 (394)
Q Consensus       121 ~~~~r~L~l~~~~~~~~~~~~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L  200 (394)
                      +..++.+.+..+....++.  ..++|+.|.+.++....     ++.+   .++|++|++++|.++.+| +++.+++|++|
T Consensus        90 ~~~L~~L~l~~n~l~~lp~--~~~~L~~L~l~~n~l~~-----l~~~---~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L  158 (454)
T 1jl5_A           90 PPHLESLVASCNSLTELPE--LPQSLKSLLVDNNNLKA-----LSDL---PPLLEYLGVSNNQLEKLP-ELQNSSFLKII  158 (454)
T ss_dssp             CTTCSEEECCSSCCSSCCC--CCTTCCEEECCSSCCSC-----CCSC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEE
T ss_pred             cCCCCEEEccCCcCCcccc--ccCCCcEEECCCCccCc-----ccCC---CCCCCEEECcCCCCCCCc-ccCCCCCCCEE
Confidence            3455666665444444332  23555666555554431     1111   145555555555555555 35555555555


Q ss_pred             ecCCCCCccccccccCCCCCcEEEcc-cCCccccchhhccCccCcEEEeeCCCCCCCCCCCCCCCCcCceeCccccC-CC
Q 037494          201 QLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITLPAPPKNYSSSLKNLIFISALHPS-SC  278 (394)
Q Consensus       201 ~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~-~~  278 (394)
                      ++++|.++.+|..+   .+|++|+++ | .+..+| .++.+++|++|+++ +|....+|...   ++|++|++.++. ..
T Consensus       159 ~l~~N~l~~lp~~~---~~L~~L~L~~n-~l~~l~-~~~~l~~L~~L~l~-~N~l~~l~~~~---~~L~~L~l~~n~l~~  229 (454)
T 1jl5_A          159 DVDNNSLKKLPDLP---PSLEFIAAGNN-QLEELP-ELQNLPFLTAIYAD-NNSLKKLPDLP---LSLESIVAGNNILEE  229 (454)
T ss_dssp             ECCSSCCSCCCCCC---TTCCEEECCSS-CCSSCC-CCTTCTTCCEEECC-SSCCSSCCCCC---TTCCEEECCSSCCSS
T ss_pred             ECCCCcCcccCCCc---ccccEEECcCC-cCCcCc-cccCCCCCCEEECC-CCcCCcCCCCc---CcccEEECcCCcCCc
Confidence            55555555555332   245555555 4 444454 35555555555555 55444443321   244444444444 22


Q ss_pred             cchhcCCCCCCCeEEEeec
Q 037494          279 TPDILSRLPTVQTLRISGD  297 (394)
Q Consensus       279 ~~~~l~~l~~L~~L~l~~~  297 (394)
                      .+ .++.+++|+.|++++|
T Consensus       230 lp-~~~~l~~L~~L~l~~N  247 (454)
T 1jl5_A          230 LP-ELQNLPFLTTIYADNN  247 (454)
T ss_dssp             CC-CCTTCTTCCEEECCSS
T ss_pred             cc-ccCCCCCCCEEECCCC
Confidence            22 2444444444444444

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.74  E-value=1.2e-19  Score=168.86  Aligned_cols=222  Identities=14%  Similarity=0.096  Sum_probs=118.6

Q ss_pred             CCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCC--CcccccCcccccEEecCCCCCc-cccccccCCCCC
Q 037494          144 MYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQ--FPPGLENLFLLKYLQLNIPTLK-CLPLLICTLLNL  220 (394)
Q Consensus       144 ~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~--lp~~i~~l~~L~~L~l~~~~l~-~lp~~l~~l~~L  220 (394)
                      ++++.+.+.++....    ..+.+ ..+++|++|++++|.+..  +|..+..+++|++|++++|.+. ..|..++.+++|
T Consensus        70 ~~l~~L~l~~n~l~~----~~~~~-~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L  144 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQ----PLAEH-FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNL  144 (336)
T ss_dssp             TTCSEEECTTCEECS----CCCSC-CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTC
T ss_pred             ccceEEEcCCccccc----cchhh-ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCC
Confidence            456666665554431    11233 456666666666666552  5555666666666666666655 355556666666


Q ss_pred             cEEEcc-cCCcc--ccchhhccCccCcEEEeeCCC-CCCC--CCCCCCCCC-cCceeCccccC-----CCcchhcCCCCC
Q 037494          221 ETLEMP-AGYID--HSPEGIWMMQKLMHLNFDSIT-LPAP--PKNYSSSLK-NLIFISALHPS-----SCTPDILSRLPT  288 (394)
Q Consensus       221 ~~L~l~-~~~l~--~lp~~i~~l~~L~~L~l~~~~-~~~~--~p~~l~~l~-~L~~L~~~~~~-----~~~~~~l~~l~~  288 (394)
                      ++|+++ |..+.  .+|..+..+++|++|+++ +| .+..  ++..++.++ +|++|++.+|.     ...+..+..+++
T Consensus       145 ~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~-~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~  223 (336)
T 2ast_B          145 VRLNLSGCSGFSEFALQTLLSSCSRLDELNLS-WCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPN  223 (336)
T ss_dssp             SEEECTTCBSCCHHHHHHHHHHCTTCCEEECC-CCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTT
T ss_pred             CEEECCCCCCCCHHHHHHHHhcCCCCCEEcCC-CCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCC
Confidence            666666 53344  245556666666666666 65 3332  333455566 66666666652     222344455666


Q ss_pred             CCeEEEeecCCccc-cchhhhhcCCCCCcEEEecCCCCCCccCC-CCCCCCCCceEEEEecccCCCCCcccccCCCCCCe
Q 037494          289 VQTLRISGDLSHYH-SGVSKSLCELHKLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQV  366 (394)
Q Consensus       289 L~~L~l~~~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~  366 (394)
                      |+.|++++|.  .. ...+..+..+++|+.|++++|..+..-.. .+.. +++|+.|++++| +....+..+.  .+|..
T Consensus       224 L~~L~l~~~~--~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~-~~~L~~L~l~~~-i~~~~~~~l~--~~l~~  297 (336)
T 2ast_B          224 LVHLDLSDSV--MLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGE-IPTLKTLQVFGI-VPDGTLQLLK--EALPH  297 (336)
T ss_dssp             CSEEECTTCT--TCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGG-CTTCCEEECTTS-SCTTCHHHHH--HHSTT
T ss_pred             CCEEeCCCCC--cCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhc-CCCCCEEeccCc-cCHHHHHHHH--hhCcc
Confidence            6666666664  11 23344556666666666666432221100 2444 666666666666 3333333222  12444


Q ss_pred             EEEecccccCc
Q 037494          367 MKLKRNSYFGR  377 (394)
Q Consensus       367 L~l~~n~~~~~  377 (394)
                      |++++|.+++.
T Consensus       298 L~l~~n~l~~~  308 (336)
T 2ast_B          298 LQINCSHFTTI  308 (336)
T ss_dssp             SEESCCCSCCT
T ss_pred             eEEecccCccc
Confidence            44655555543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.74  E-value=6.7e-18  Score=153.88  Aligned_cols=173  Identities=19%  Similarity=0.162  Sum_probs=94.6

Q ss_pred             ccCCceeEEEcCCCCCCCCcccccCcccccEEecCCCCCccccccccCCCCCcEEEcc-cCCccccchhhccCccCcEEE
Q 037494          169 ENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLN  247 (394)
Q Consensus       169 ~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~  247 (394)
                      ..+++|+.|++++|.+..++. ++.+++|++|++++|.+..+++ ++.+++|++|+++ | .+..+|. ++.+++|++|+
T Consensus        43 ~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~  118 (291)
T 1h6t_A           43 NELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN-KVKDLSS-LKDLKKLKSLS  118 (291)
T ss_dssp             HHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCGGG-GTTCTTCCEEE
T ss_pred             hhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCC-cCCCChh-hccCCCCCEEE
Confidence            344555566666665555533 5555666666666665555554 5556666666666 5 5555443 55556666666


Q ss_pred             eeCCCCCCCCCCCCCCCCcCceeCccccCCCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCC
Q 037494          248 FDSITLPAPPKNYSSSLKNLIFISALHPSSCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLS  327 (394)
Q Consensus       248 l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~  327 (394)
                      ++ +|.+..+ +.++.+++|+.|++.++.......++.+++|+.|++++|.  .. .++. +..+++|+.|++++ +.+.
T Consensus       119 L~-~n~i~~~-~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~--l~-~~~~-l~~l~~L~~L~L~~-N~i~  191 (291)
T 1h6t_A          119 LE-HNGISDI-NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQ--IS-DIVP-LAGLTKLQNLYLSK-NHIS  191 (291)
T ss_dssp             CT-TSCCCCC-GGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC--CC-CCGG-GTTCTTCCEEECCS-SCCC
T ss_pred             CC-CCcCCCC-hhhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCc--cc-cchh-hcCCCccCEEECCC-CcCC
Confidence            66 5554443 2455555555555555552222455556666666666654  22 2222 55566666666665 4455


Q ss_pred             ccCCCCCCCCCCceEEEEecccCCCCC
Q 037494          328 RMVLSEYQFPPSLIQLSLSNTELMEDP  354 (394)
Q Consensus       328 ~L~p~~~~~l~~L~~L~L~~~~l~~~~  354 (394)
                      .+ |.+.. +++|+.|++++|++...+
T Consensus       192 ~l-~~l~~-l~~L~~L~l~~n~i~~~~  216 (291)
T 1h6t_A          192 DL-RALAG-LKNLDVLELFSQECLNKP  216 (291)
T ss_dssp             BC-GGGTT-CTTCSEEEEEEEEEECCC
T ss_pred             CC-hhhcc-CCCCCEEECcCCcccCCc
Confidence            54 44444 666666666666654433

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.74  E-value=4.6e-17  Score=157.59  Aligned_cols=137  Identities=14%  Similarity=0.110  Sum_probs=72.7

Q ss_pred             CceEEEEEEeCCcchhhccCCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCcccccCcccccEEe
Q 037494          122 ATVKRCFILEDLIEFISLEQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQ  201 (394)
Q Consensus       122 ~~~r~L~l~~~~~~~~~~~~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~  201 (394)
                      ..++.+.+..+....++..  .++|+.|.+.++...     .++++ ..+++|++|++++|.++.+|..+   .+|++|+
T Consensus       111 ~~L~~L~l~~n~l~~l~~~--~~~L~~L~L~~n~l~-----~lp~~-~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~  179 (454)
T 1jl5_A          111 QSLKSLLVDNNNLKALSDL--PPLLEYLGVSNNQLE-----KLPEL-QNSSFLKIIDVDNNSLKKLPDLP---PSLEFIA  179 (454)
T ss_dssp             TTCCEEECCSSCCSCCCSC--CTTCCEEECCSSCCS-----SCCCC-TTCTTCCEEECCSSCCSCCCCCC---TTCCEEE
T ss_pred             CCCcEEECCCCccCcccCC--CCCCCEEECcCCCCC-----CCccc-CCCCCCCEEECCCCcCcccCCCc---ccccEEE
Confidence            4566666664444333321  246666666666554     23333 66666666666666666555433   3566666


Q ss_pred             cCCCCCccccccccCCCCCcEEEcc-cCCccccchhhccCccCcEEEeeCCCCCCCCCCCCCCCCcCceeCccccC
Q 037494          202 LNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITLPAPPKNYSSSLKNLIFISALHPS  276 (394)
Q Consensus       202 l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~  276 (394)
                      +++|.+..+| .++++++|++|+++ | .+..+|..   .++|++|+++ +|.+..+| .++.+++|++|++.++.
T Consensus       180 L~~n~l~~l~-~~~~l~~L~~L~l~~N-~l~~l~~~---~~~L~~L~l~-~n~l~~lp-~~~~l~~L~~L~l~~N~  248 (454)
T 1jl5_A          180 AGNNQLEELP-ELQNLPFLTAIYADNN-SLKKLPDL---PLSLESIVAG-NNILEELP-ELQNLPFLTTIYADNNL  248 (454)
T ss_dssp             CCSSCCSSCC-CCTTCTTCCEEECCSS-CCSSCCCC---CTTCCEEECC-SSCCSSCC-CCTTCTTCCEEECCSSC
T ss_pred             CcCCcCCcCc-cccCCCCCCEEECCCC-cCCcCCCC---cCcccEEECc-CCcCCccc-ccCCCCCCCEEECCCCc
Confidence            6666665555 45556666666555 5 44444432   1345555555 55444444 24455555555554443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.73  E-value=4.4e-19  Score=168.36  Aligned_cols=232  Identities=15%  Similarity=0.098  Sum_probs=162.9

Q ss_pred             CCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCC----CCcccc-------cCcccccEEecCCCCCcc
Q 037494          141 QSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLD----QFPPGL-------ENLFLLKYLQLNIPTLKC  209 (394)
Q Consensus       141 ~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~----~lp~~i-------~~l~~L~~L~l~~~~l~~  209 (394)
                      ..+++|+.|.+.++.........+...+..+++|++|++++|.+.    .+|..+       ..+++|++|++++|.+..
T Consensus        29 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~  108 (386)
T 2ca6_A           29 LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP  108 (386)
T ss_dssp             HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT
T ss_pred             hcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCH
Confidence            456778888888886653212223344478889999999887655    334444       678889999999888775


Q ss_pred             -----ccccccCCCCCcEEEcc-cCCccc-----cchhhccC---------ccCcEEEeeCCCCCC--CCC---CCCCCC
Q 037494          210 -----LPLLICTLLNLETLEMP-AGYIDH-----SPEGIWMM---------QKLMHLNFDSITLPA--PPK---NYSSSL  264 (394)
Q Consensus       210 -----lp~~l~~l~~L~~L~l~-~~~l~~-----lp~~i~~l---------~~L~~L~l~~~~~~~--~~p---~~l~~l  264 (394)
                           +|..+..+++|++|+++ | .+..     ++..+..+         ++|++|+++ +|.+.  .+|   ..++.+
T Consensus       109 ~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~-~n~l~~~~~~~l~~~l~~~  186 (386)
T 2ca6_A          109 TAQEPLIDFLSKHTPLEHLYLHNN-GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICG-RNRLENGSMKEWAKTFQSH  186 (386)
T ss_dssp             TTHHHHHHHHHHCTTCCEEECCSS-CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECC-SSCCTGGGHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhCCCCCEEECcCC-CCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECC-CCCCCcHHHHHHHHHHHhC
Confidence                 77778888899999998 7 6542     33334444         889999998 87753  333   345677


Q ss_pred             CcCceeCccccCCC------cch-hcCCCCCCCeEEEeecCCccc----cchhhhhcCCCCCcEEEecCCCCCCccC---
Q 037494          265 KNLIFISALHPSSC------TPD-ILSRLPTVQTLRISGDLSHYH----SGVSKSLCELHKLECLKLVNGSKLSRMV---  330 (394)
Q Consensus       265 ~~L~~L~~~~~~~~------~~~-~l~~l~~L~~L~l~~~~~~~~----~~~~~~l~~~~~L~~L~l~~~~~L~~L~---  330 (394)
                      ++|++|.+.+|...      ..+ .+..+++|+.|++++|.  ..    ..++..+..+++|+.|+|++ +.+....   
T Consensus       187 ~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~--l~~~g~~~l~~~l~~~~~L~~L~L~~-n~i~~~~~~~  263 (386)
T 2ca6_A          187 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT--FTHLGSSALAIALKSWPNLRELGLND-CLLSARGAAA  263 (386)
T ss_dssp             TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC--CHHHHHHHHHHHGGGCTTCCEEECTT-CCCCHHHHHH
T ss_pred             CCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCC--CCcHHHHHHHHHHccCCCcCEEECCC-CCCchhhHHH
Confidence            78889988888722      233 77788889999998886  43    56777888888999999987 3343320   


Q ss_pred             -C-CC--CCCCCCceEEEEecccCCCC----Ccccc-cCCCCCCeEEEecccccCce
Q 037494          331 -L-SE--YQFPPSLIQLSLSNTELMED----PMPML-ERLPRLQVMKLKRNSYFGRK  378 (394)
Q Consensus       331 -p-~~--~~~l~~L~~L~L~~~~l~~~----~~~~l-~~l~~L~~L~l~~n~~~~~~  378 (394)
                       | ++  +. +++|+.|+|++|.+...    .+..+ .++++|++|++++|.+++..
T Consensus       264 l~~~l~~~~-~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          264 VVDAFSKLE-NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             HHHHHHTCS-SCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             HHHHHhhcc-CCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence             3 33  44 68899999999987552    33344 56889999999888877654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.73  E-value=2.2e-17  Score=165.04  Aligned_cols=230  Identities=16%  Similarity=0.047  Sum_probs=158.3

Q ss_pred             ceEEEEEEeCCcchhhccCCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCcccccCcccccEEec
Q 037494          123 TVKRCFILEDLIEFISLEQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQL  202 (394)
Q Consensus       123 ~~r~L~l~~~~~~~~~~~~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l  202 (394)
                      .++.+.+..+....+|.... ++|+.|.+.++...     .++.   .+++|++|++++|.++.+|.   .+++|++|++
T Consensus        41 ~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~-----~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~L  108 (622)
T 3g06_A           41 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLT-----SLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSI  108 (622)
T ss_dssp             CCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCS-----CCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEE
T ss_pred             CCcEEEecCCCcCccChhhC-CCCcEEEecCCCCC-----CCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEEC
Confidence            46677777666666666533 89999999999876     3443   57899999999999999987   7799999999


Q ss_pred             CCCCCccccccccCCCCCcEEEcc-cCCccccchhhccCccCcEEEeeCCCCCCCCCCCCCCCCcCceeCccccC-CCcc
Q 037494          203 NIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITLPAPPKNYSSSLKNLIFISALHPS-SCTP  280 (394)
Q Consensus       203 ~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~-~~~~  280 (394)
                      ++|.++.+|.   .+.+|++|+++ | .+..+|..   +++|++|+++ +|.+..+|..+   ++|+.|.+.++. ...+
T Consensus       109 s~N~l~~l~~---~l~~L~~L~L~~N-~l~~lp~~---l~~L~~L~Ls-~N~l~~l~~~~---~~L~~L~L~~N~l~~l~  177 (622)
T 3g06_A          109 FSNPLTHLPA---LPSGLCKLWIFGN-QLTSLPVL---PPGLQELSVS-DNQLASLPALP---SELCKLWAYNNQLTSLP  177 (622)
T ss_dssp             CSCCCCCCCC---CCTTCCEEECCSS-CCSCCCCC---CTTCCEEECC-SSCCSCCCCCC---TTCCEEECCSSCCSCCC
T ss_pred             cCCcCCCCCC---CCCCcCEEECCCC-CCCcCCCC---CCCCCEEECc-CCcCCCcCCcc---CCCCEEECCCCCCCCCc
Confidence            9999999987   57899999999 8 89999874   5899999999 99877777543   344555554444 2222


Q ss_pred             hhcCCCCCCCeEEEeecCCc-----------------cccchhhhhcCCCCCcEEEecCCCCCCccCCCCCCCCCCceEE
Q 037494          281 DILSRLPTVQTLRISGDLSH-----------------YHSGVSKSLCELHKLECLKLVNGSKLSRMVLSEYQFPPSLIQL  343 (394)
Q Consensus       281 ~~l~~l~~L~~L~l~~~~~~-----------------~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p~~~~~l~~L~~L  343 (394)
                         ..+++|+.|++++|.-.                 ....+|.   .+++|+.|++++ +++..+ |  .. +++|+.|
T Consensus       178 ---~~~~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~---~~~~L~~L~Ls~-N~L~~l-p--~~-l~~L~~L  246 (622)
T 3g06_A          178 ---MLPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPA---LPSGLKELIVSG-NRLTSL-P--VL-PSELKEL  246 (622)
T ss_dssp             ---CCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCC---CCTTCCEEECCS-SCCSCC-C--CC-CTTCCEE
T ss_pred             ---ccCCCCcEEECCCCCCCCCCCccchhhEEECcCCcccccCC---CCCCCCEEEccC-CccCcC-C--CC-CCcCcEE
Confidence               23344555555444300                 1122221   135667777766 456655 4  33 6778888


Q ss_pred             EEecccCCCCCcccccCCCCCCeEEEecccccCceeEEeCCCCCcCCccc
Q 037494          344 SLSNTELMEDPMPMLERLPRLQVMKLKRNSYFGRKLACVGSGGFPELQVL  393 (394)
Q Consensus       344 ~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~fp~L~~L  393 (394)
                      +|++|+++..+  .  .+++|+.|++++|.+....  .. ...+++|+.|
T Consensus       247 ~Ls~N~L~~lp--~--~~~~L~~L~Ls~N~L~~lp--~~-l~~l~~L~~L  289 (622)
T 3g06_A          247 MVSGNRLTSLP--M--LPSGLLSLSVYRNQLTRLP--ES-LIHLSSETTV  289 (622)
T ss_dssp             ECCSSCCSCCC--C--CCTTCCEEECCSSCCCSCC--GG-GGGSCTTCEE
T ss_pred             ECCCCCCCcCC--c--ccccCcEEeCCCCCCCcCC--HH-HhhccccCEE
Confidence            88888875422  2  5688889999888776332  11 2346666654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.72  E-value=6e-17  Score=147.55  Aligned_cols=189  Identities=19%  Similarity=0.197  Sum_probs=156.4

Q ss_pred             EEEcCCCCCCCCcccccCcccccEEecCCCCCccccccccCCCCCcEEEcc-cCCccccchhhccCccCcEEEeeCCCCC
Q 037494          176 VLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITLP  254 (394)
Q Consensus       176 ~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~~  254 (394)
                      .+.+....+..+. ....+.+|++|++++|.++.+| .++.+++|++|+++ | .+..++. +..+++|++|+++ +|.+
T Consensus        28 ~~~l~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~-~n~l  102 (291)
T 1h6t_A           28 KDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLD-ENKV  102 (291)
T ss_dssp             HHHTTCSCTTSEE-CHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECC-SSCC
T ss_pred             HHHhcCCCccccc-chhhcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECC-CCcC
Confidence            3445666555432 3567899999999999999987 58899999999999 8 8888887 9999999999999 9987


Q ss_pred             CCCCCCCCCCCcCceeCccccCCCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCccCCCCC
Q 037494          255 APPKNYSSSLKNLIFISALHPSSCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVLSEY  334 (394)
Q Consensus       255 ~~~p~~l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p~~~  334 (394)
                      ..+| .++.+++|++|++.++.....+.+..+++|+.|++++|.  .. .+ ..+..+++|+.|++++ +.+..+ +.+.
T Consensus       103 ~~~~-~l~~l~~L~~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~--l~-~~-~~l~~l~~L~~L~L~~-N~l~~~-~~l~  175 (291)
T 1h6t_A          103 KDLS-SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNK--IT-DI-TVLSRLTKLDTLSLED-NQISDI-VPLA  175 (291)
T ss_dssp             CCGG-GGTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSC--CC-CC-GGGGGCTTCSEEECCS-SCCCCC-GGGT
T ss_pred             CCCh-hhccCCCCCEEECCCCcCCCChhhcCCCCCCEEEccCCc--CC-cc-hhhccCCCCCEEEccC-Cccccc-hhhc
Confidence            7765 489999999999999984445778999999999999996  32 33 5788999999999998 667776 4466


Q ss_pred             CCCCCceEEEEecccCCCCCcccccCCCCCCeEEEecccccCcee
Q 037494          335 QFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFGRKL  379 (394)
Q Consensus       335 ~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~  379 (394)
                      . +++|+.|++++|.+..  ++.+..+++|+.|++++|.+.....
T Consensus       176 ~-l~~L~~L~L~~N~i~~--l~~l~~l~~L~~L~l~~n~i~~~~~  217 (291)
T 1h6t_A          176 G-LTKLQNLYLSKNHISD--LRALAGLKNLDVLELFSQECLNKPI  217 (291)
T ss_dssp             T-CTTCCEEECCSSCCCB--CGGGTTCTTCSEEEEEEEEEECCCE
T ss_pred             C-CCccCEEECCCCcCCC--ChhhccCCCCCEEECcCCcccCCcc
Confidence            6 8999999999999854  4668999999999999998766443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.72  E-value=1.2e-17  Score=166.74  Aligned_cols=143  Identities=20%  Similarity=0.196  Sum_probs=69.3

Q ss_pred             CCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCcccccCcccccEEecCCCCCccccccccCCCCCc
Q 037494          142 SDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLE  221 (394)
Q Consensus       142 ~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~  221 (394)
                      .+.+|+.|.+.++...     .++.+ ..+++|+.|++++|.+..+++ ++.+++|+.|+|++|.+..+| .++.+++|+
T Consensus        41 ~L~~L~~L~l~~n~i~-----~l~~l-~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~  112 (605)
T 1m9s_A           41 ELNSIDQIIANNSDIK-----SVQGI-QYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLK  112 (605)
T ss_dssp             HHTTCCCCBCTTCCCC-----CCTTG-GGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCC
T ss_pred             cCCCCCEEECcCCCCC-----CChHH-ccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCC
Confidence            3444555555444443     22333 555555555555555554444 555555555555555555444 455555555


Q ss_pred             EEEcc-cCCccccchhhccCccCcEEEeeCCCCCCCCCCCCCCCCcCceeCccccC-CCcchhcCCCCCCCeEEEeec
Q 037494          222 TLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITLPAPPKNYSSSLKNLIFISALHPS-SCTPDILSRLPTVQTLRISGD  297 (394)
Q Consensus       222 ~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~l~~~  297 (394)
                      +|+|+ | .+..+| .+..+++|+.|+++ +|.+..+ +.++.+++|+.|++.+|. ...+. +..+++|+.|++++|
T Consensus       113 ~L~Ls~N-~l~~l~-~l~~l~~L~~L~Ls-~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N  185 (605)
T 1m9s_A          113 SLSLEHN-GISDIN-GLVHLPQLESLYLG-NNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKN  185 (605)
T ss_dssp             EEECTTS-CCCCCG-GGGGCTTCSEEECC-SSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSS
T ss_pred             EEEecCC-CCCCCc-cccCCCccCEEECC-CCccCCc-hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCC
Confidence            55555 4 444443 34555555555555 5544433 334444555555554444 11111 444445555555444

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.72  E-value=1.5e-16  Score=141.66  Aligned_cols=174  Identities=17%  Similarity=0.127  Sum_probs=137.4

Q ss_pred             CceeEEEcCCCCCCCCcccccCcccccEEecCCCCCccccc-cccCCCCCcEEEcc-cCCccccch-hhccCccCcEEEe
Q 037494          172 KYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPL-LICTLLNLETLEMP-AGYIDHSPE-GIWMMQKLMHLNF  248 (394)
Q Consensus       172 ~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~-~~~l~~lp~-~i~~l~~L~~L~l  248 (394)
                      ...++++++++.++.+|..+.  .+++.|++++|.+..+++ .++++++|++|+++ | .+..+++ .+..+++|++|++
T Consensus        14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGL   90 (251)
T ss_dssp             GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEEC
Confidence            457789999999999998776  589999999999987764 58899999999999 8 7877765 4788999999999


Q ss_pred             eCCCCCCCCCCC-CCCCCcCceeCccccC-CCcc-hhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCC
Q 037494          249 DSITLPAPPKNY-SSSLKNLIFISALHPS-SCTP-DILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSK  325 (394)
Q Consensus       249 ~~~~~~~~~p~~-l~~l~~L~~L~~~~~~-~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  325 (394)
                      + +|.+..+|+. ++.+++|++|++.++. ...+ ..++.+++|+.|++++|.  .....+..+..+++|+.|++++ +.
T Consensus        91 ~-~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~~L~L~~-N~  166 (251)
T 3m19_A           91 A-NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ--LQSIPAGAFDKLTNLQTLSLST-NQ  166 (251)
T ss_dssp             T-TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCS-SC
T ss_pred             C-CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc--CCccCHHHcCcCcCCCEEECCC-Cc
Confidence            9 9987777754 6888999999988887 3333 346778888888888885  3333334677788888888887 66


Q ss_pred             CCccCC-CCCCCCCCceEEEEecccCCCC
Q 037494          326 LSRMVL-SEYQFPPSLIQLSLSNTELMED  353 (394)
Q Consensus       326 L~~L~p-~~~~~l~~L~~L~L~~~~l~~~  353 (394)
                      +..+.| .+.. +++|+.|++++|++.+.
T Consensus       167 l~~~~~~~~~~-l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          167 LQSVPHGAFDR-LGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CSCCCTTTTTT-CTTCCEEECCSCCBCTT
T ss_pred             CCccCHHHHhC-CCCCCEEEeeCCceeCC
Confidence            777723 6667 88888888888887665

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.71  E-value=2.3e-17  Score=164.70  Aligned_cols=180  Identities=21%  Similarity=0.174  Sum_probs=128.1

Q ss_pred             ccCCceeEEEcCCCCCCCCcccccCcccccEEecCCCCCccccccccCCCCCcEEEcc-cCCccccchhhccCccCcEEE
Q 037494          169 ENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLN  247 (394)
Q Consensus       169 ~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~  247 (394)
                      ..+++|+.|+++++.+..++ .++.+++|+.|+|++|.+..+|+ ++.+++|+.|+|+ | .+..+| .+..+++|++|+
T Consensus        40 ~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~  115 (605)
T 1m9s_A           40 NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSLS  115 (605)
T ss_dssp             HHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEEE
T ss_pred             hcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCC-CCCCCh-hhccCCCCCEEE
Confidence            56677788888888877776 47778888888888888877775 7778888888888 7 777765 577788888888


Q ss_pred             eeCCCCCCCCCCCCCCCCcCceeCccccCCCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCC
Q 037494          248 FDSITLPAPPKNYSSSLKNLIFISALHPSSCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLS  327 (394)
Q Consensus       248 l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~  327 (394)
                      ++ +|.+..+ +.++.+++|+.|++..|.......++.+++|+.|++++|.  .....+  +..+++|+.|+|++ +.+.
T Consensus       116 Ls-~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~--l~~~~~--l~~l~~L~~L~Ls~-N~i~  188 (605)
T 1m9s_A          116 LE-HNGISDI-NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQ--ISDIVP--LAGLTKLQNLYLSK-NHIS  188 (605)
T ss_dssp             CT-TSCCCCC-GGGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSC--CCCCGG--GTTCTTCCEEECCS-SCCC
T ss_pred             ec-CCCCCCC-ccccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCc--CCCchh--hccCCCCCEEECcC-CCCC
Confidence            88 7776665 3577777888888877773333667777888888887775  333223  67777888888877 5566


Q ss_pred             ccCCCCCCCCCCceEEEEecccCCCCCcccccCC
Q 037494          328 RMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERL  361 (394)
Q Consensus       328 ~L~p~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l  361 (394)
                      .+ |.+.. +++|+.|+|++|++...+...+..+
T Consensus       189 ~l-~~l~~-l~~L~~L~L~~N~l~~~p~~~~~~l  220 (605)
T 1m9s_A          189 DL-RALAG-LKNLDVLELFSQECLNKPINHQSNL  220 (605)
T ss_dssp             BC-GGGTT-CTTCSEEECCSEEEECCCCCCCSSC
T ss_pred             CC-hHHcc-CCCCCEEEccCCcCcCCcccccccE
Confidence            65 55555 7778888888877765554444433

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.70  E-value=2.9e-16  Score=139.90  Aligned_cols=147  Identities=20%  Similarity=0.176  Sum_probs=87.9

Q ss_pred             CceeEEEcCCCCCCCCc-ccccCcccccEEecCCCCCcccccc-ccCCCCCcEEEcc-cCCccccch-hhccCccCcEEE
Q 037494          172 KYLRVLNWGSAVLDQFP-PGLENLFLLKYLQLNIPTLKCLPLL-ICTLLNLETLEMP-AGYIDHSPE-GIWMMQKLMHLN  247 (394)
Q Consensus       172 ~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~l~~lp~~-l~~l~~L~~L~l~-~~~l~~lp~-~i~~l~~L~~L~  247 (394)
                      +.++.|++++|.+..++ ..++.+++|++|++++|.+..+++. +..+++|++|+++ | .+..+|. .+..+++|++|+
T Consensus        35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~  113 (251)
T 3m19_A           35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN-QLASLPLGVFDHLTQLDKLY  113 (251)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC-cccccChhHhcccCCCCEEE
Confidence            45666666666666543 3566666666666666666655433 5666666666666 5 5655553 345666666666


Q ss_pred             eeCCCCCCCCCCC-CCCCCcCceeCccccC-CCcc-hhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecC
Q 037494          248 FDSITLPAPPKNY-SSSLKNLIFISALHPS-SCTP-DILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVN  322 (394)
Q Consensus       248 l~~~~~~~~~p~~-l~~l~~L~~L~~~~~~-~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~  322 (394)
                      ++ +|.+..+|+. ++.+++|++|++.++. ...+ ..++.+++|+.|++++|.  .....+..+..+++|+.|++++
T Consensus       114 L~-~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~l~~  188 (251)
T 3m19_A          114 LG-GNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ--LQSVPHGAFDRLGKLQTITLFG  188 (251)
T ss_dssp             CC-SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CSCCCTTTTTTCTTCCEEECCS
T ss_pred             cC-CCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCc--CCccCHHHHhCCCCCCEEEeeC
Confidence            66 6665555554 4566666666666665 2222 246666666666666664  3333333555666666666665

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.67  E-value=2.1e-18  Score=160.34  Aligned_cols=218  Identities=15%  Similarity=0.139  Sum_probs=174.3

Q ss_pred             CccEEEEecCCCccchhcchhHHhccC--CceeEEEcCCCCCCCCcccccCcccccEEecCCCCCcc--ccccccCCCCC
Q 037494          145 YLQSFLNHSSESDHLALIDCENFCENF--KYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKC--LPLLICTLLNL  220 (394)
Q Consensus       145 ~lr~L~l~~~~~~~~~~~~l~~~~~~l--~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~--lp~~l~~l~~L  220 (394)
                      .++.+.+.++...       +..+..+  +++++|+++++.+...+..+..+++|++|++++|.+..  +|..+..+++|
T Consensus        48 ~~~~l~l~~~~~~-------~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L  120 (336)
T 2ast_B           48 LWQTLDLTGKNLH-------PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKL  120 (336)
T ss_dssp             TSSEEECTTCBCC-------HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCC
T ss_pred             hheeeccccccCC-------HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCC
Confidence            4778888876654       4444666  89999999999998777778899999999999998763  78888999999


Q ss_pred             cEEEcc-cCCcc-ccchhhccCccCcEEEeeCCCC-CC--CCCCCCCCCCcCceeCcccc-C-C--CcchhcCCCC-CCC
Q 037494          221 ETLEMP-AGYID-HSPEGIWMMQKLMHLNFDSITL-PA--PPKNYSSSLKNLIFISALHP-S-S--CTPDILSRLP-TVQ  290 (394)
Q Consensus       221 ~~L~l~-~~~l~-~lp~~i~~l~~L~~L~l~~~~~-~~--~~p~~l~~l~~L~~L~~~~~-~-~--~~~~~l~~l~-~L~  290 (394)
                      ++|+++ | .+. ..|..++.+++|++|+++ +|. ..  .++..++.+++|++|++.+| . .  ..+..+..++ +|+
T Consensus       121 ~~L~L~~~-~l~~~~~~~l~~~~~L~~L~L~-~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~  198 (336)
T 2ast_B          121 QNLSLEGL-RLSDPIVNTLAKNSNLVRLNLS-GCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETIT  198 (336)
T ss_dssp             SEEECTTC-BCCHHHHHHHTTCTTCSEEECT-TCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCC
T ss_pred             CEEeCcCc-ccCHHHHHHHhcCCCCCEEECC-CCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCC
Confidence            999999 8 555 567789999999999999 884 44  25555778999999999999 5 2  2566688899 999


Q ss_pred             eEEEeecCCccc-cchhhhhcCCCCCcEEEecCCCCCCccCC-CCCCCCCCceEEEEeccc-CCCCCcccccCCCCCCeE
Q 037494          291 TLRISGDLSHYH-SGVSKSLCELHKLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTE-LMEDPMPMLERLPRLQVM  367 (394)
Q Consensus       291 ~L~l~~~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~-l~~~~~~~l~~l~~L~~L  367 (394)
                      .|++++|..... ..++..+..+++|+.|++++|..+..-.+ .+.. +++|+.|++++|. +....+..++++++|+.|
T Consensus       199 ~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~-l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L  277 (336)
T 2ast_B          199 QLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ-LNYLQHLSLSRCYDIIPETLLELGEIPTLKTL  277 (336)
T ss_dssp             EEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGG-CTTCCEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred             EEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhC-CCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEE
Confidence            999999841122 56777888999999999998554543214 7777 8999999999995 333334468899999999


Q ss_pred             EEecc
Q 037494          368 KLKRN  372 (394)
Q Consensus       368 ~l~~n  372 (394)
                      ++++|
T Consensus       278 ~l~~~  282 (336)
T 2ast_B          278 QVFGI  282 (336)
T ss_dssp             ECTTS
T ss_pred             eccCc
Confidence            99877

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.67  E-value=5.3e-16  Score=156.24  Aligned_cols=202  Identities=18%  Similarity=0.200  Sum_probs=155.9

Q ss_pred             ccCCceeEEEcCCCCCC---CCcccccCcccccEEecCCCCCccccccccCCCCCcEEEcc-cCCccccc-hhhccCccC
Q 037494          169 ENFKYLRVLNWGSAVLD---QFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSP-EGIWMMQKL  243 (394)
Q Consensus       169 ~~l~~L~~L~l~~~~~~---~lp~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp-~~i~~l~~L  243 (394)
                      ..++.|++|++++|.+.   ..+.....+.+|+++++..+.+..++..+..+.+|+.+++. +......+ ..+..++++
T Consensus       368 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l  447 (635)
T 4g8a_A          368 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL  447 (635)
T ss_dssp             CBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTC
T ss_pred             ccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccc
Confidence            46778888888888765   34556667788888888888877777778888889999888 62333333 346778889


Q ss_pred             cEEEeeCCCCCCCC-CCCCCCCCcCceeCccccC---CCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEE
Q 037494          244 MHLNFDSITLPAPP-KNYSSSLKNLIFISALHPS---SCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLK  319 (394)
Q Consensus       244 ~~L~l~~~~~~~~~-p~~l~~l~~L~~L~~~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~  319 (394)
                      +.++++ .+..... +..+..+++|+.|.+.++.   ...+..+..+++|+.|++++|.  .....|..+..+++|+.|+
T Consensus       448 ~~l~ls-~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~--L~~l~~~~f~~l~~L~~L~  524 (635)
T 4g8a_A          448 IYLDIS-HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ--LEQLSPTAFNSLSSLQVLN  524 (635)
T ss_dssp             CEEECT-TSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC--CCEECTTTTTTCTTCCEEE
T ss_pred             cccccc-ccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCc--cCCcChHHHcCCCCCCEEE
Confidence            999988 8774443 4456788889999988876   3355678888999999999986  5555677888899999999


Q ss_pred             ecCCCCCCccCC-CCCCCCCCceEEEEecccCCCCCcccccCC-CCCCeEEEeccccc
Q 037494          320 LVNGSKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERL-PRLQVMKLKRNSYF  375 (394)
Q Consensus       320 l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l-~~L~~L~l~~n~~~  375 (394)
                      |++ +++..+.| .+.. +++|+.|+|++|+++...+..+..+ ++|+.|++++|.+.
T Consensus       525 Ls~-N~l~~l~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~  580 (635)
T 4g8a_A          525 MSH-NNFFSLDTFPYKC-LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA  580 (635)
T ss_dssp             CTT-SCCCBCCCGGGTT-CTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred             CCC-CcCCCCChhHHhC-CCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence            988 67888844 6777 8999999999999888777788887 57999999887653

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.66  E-value=1.3e-16  Score=143.03  Aligned_cols=170  Identities=16%  Similarity=0.139  Sum_probs=112.9

Q ss_pred             CCceeEEEcCCCCCCCCcccccCcccccEEecCCCCCccccccccCCCCCcEEEcc-cCCccccchhhccCccCcEEEee
Q 037494          171 FKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLNFD  249 (394)
Q Consensus       171 l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~  249 (394)
                      +..+..++++++.++.++ .+..+++|++|++++|.++.+| .++.+++|++|+++ | .+..+|. +..+++|++|+++
T Consensus        18 l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~   93 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSVN   93 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECC
T ss_pred             HHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEECC
Confidence            445555666777666665 4666777777777777777776 66677777777777 6 6766666 6777777777777


Q ss_pred             CCCCCCCCCCCCCCCCcCceeCccccCCCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCcc
Q 037494          250 SITLPAPPKNYSSSLKNLIFISALHPSSCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRM  329 (394)
Q Consensus       250 ~~~~~~~~p~~l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L  329 (394)
                       +|.+..+|....  ++|+.|++.++.....+.++.+++|+.|++++|.   ...++ .+..+++|+.|++++ +.+..+
T Consensus        94 -~N~l~~l~~~~~--~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~---i~~~~-~l~~l~~L~~L~L~~-N~i~~~  165 (263)
T 1xeu_A           94 -RNRLKNLNGIPS--ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNK---LKSIV-MLGFLSKLEVLDLHG-NEITNT  165 (263)
T ss_dssp             -SSCCSCCTTCCC--SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSC---CCBCG-GGGGCTTCCEEECTT-SCCCBC
T ss_pred             -CCccCCcCcccc--CcccEEEccCCccCCChhhcCcccccEEECCCCc---CCCCh-HHccCCCCCEEECCC-CcCcch
Confidence             776666654333  6777777777663334457777777777777774   22233 566777777777776 555555


Q ss_pred             CCCCCCCCCCceEEEEecccCCCCC
Q 037494          330 VLSEYQFPPSLIQLSLSNTELMEDP  354 (394)
Q Consensus       330 ~p~~~~~l~~L~~L~L~~~~l~~~~  354 (394)
                       +.+.. +++|+.|++++|++...+
T Consensus       166 -~~l~~-l~~L~~L~l~~N~~~~~~  188 (263)
T 1xeu_A          166 -GGLTR-LKKVNWIDLTGQKCVNEP  188 (263)
T ss_dssp             -TTSTT-CCCCCEEEEEEEEEECCC
T ss_pred             -HHhcc-CCCCCEEeCCCCcccCCc
Confidence             45555 777788888777765544

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.66  E-value=1e-15  Score=151.35  Aligned_cols=159  Identities=17%  Similarity=0.188  Sum_probs=74.4

Q ss_pred             CceeEEEcCCCCCCCCcccccCcccccEEecCCCCCccccccccCCCCCcEEEcc-cCCccccchhhccCccCcEEEeeC
Q 037494          172 KYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLNFDS  250 (394)
Q Consensus       172 ~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~  250 (394)
                      ++|++|++++|.++.+|   +.+++|++|++++|.++.+|. +++  +|++|+++ | .+..+|.   .+++|++|+++ 
T Consensus        80 ~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls-  148 (571)
T 3cvr_A           80 PQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNN-QLTMLPE---LPALLEYINAD-  148 (571)
T ss_dssp             TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSS-CCSCCCC---CCTTCCEEECC-
T ss_pred             CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCC-cCCCCCC---cCccccEEeCC-
Confidence            44555555555555554   234555555555555555554 333  55555555 4 4444544   34555555555 


Q ss_pred             CCCCCCCCCCCCCCCcCceeCccccC-CCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCC-------cEEEecC
Q 037494          251 ITLPAPPKNYSSSLKNLIFISALHPS-SCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKL-------ECLKLVN  322 (394)
Q Consensus       251 ~~~~~~~p~~l~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L-------~~L~l~~  322 (394)
                      +|.+..+|.   .+++|++|++.+|. ...+. ++  ++|+.|++++|.   ...+|. +..  +|       +.|++++
T Consensus       149 ~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~---L~~lp~-~~~--~L~~~~~~L~~L~Ls~  216 (571)
T 3cvr_A          149 NNQLTMLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNL---LESLPA-VPV--RNHHSEETEIFFRCRE  216 (571)
T ss_dssp             SSCCSCCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSC---CSSCCC-CC----------CCEEEECCS
T ss_pred             CCccCcCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCC---CCchhh-HHH--hhhcccccceEEecCC
Confidence            555444443   34455555555544 22222 33  455555555553   223333 221  33       5555544


Q ss_pred             CCCCCccCC-CCCCCCCCceEEEEecccCCCCCcc
Q 037494          323 GSKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMP  356 (394)
Q Consensus       323 ~~~L~~L~p-~~~~~l~~L~~L~L~~~~l~~~~~~  356 (394)
                       +.+..+ | ++.. +++|+.|+|++|++....+.
T Consensus       217 -N~l~~l-p~~l~~-l~~L~~L~L~~N~l~~~~p~  248 (571)
T 3cvr_A          217 -NRITHI-PENILS-LDPTCTIILEDNPLSSRIRE  248 (571)
T ss_dssp             -SCCCCC-CGGGGG-SCTTEEEECCSSSCCHHHHH
T ss_pred             -Ccceec-CHHHhc-CCCCCEEEeeCCcCCCcCHH
Confidence             444444 4 4444 45555555555554443333

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.65  E-value=8e-17  Score=148.15  Aligned_cols=197  Identities=14%  Similarity=0.031  Sum_probs=137.0

Q ss_pred             CCCCccEEEEecCCCccchhcchhHHh--ccCCceeEEEcCCCCCCCC-c----ccccCcccccEEecCCCCCcccc-cc
Q 037494          142 SDMYLQSFLNHSSESDHLALIDCENFC--ENFKYLRVLNWGSAVLDQF-P----PGLENLFLLKYLQLNIPTLKCLP-LL  213 (394)
Q Consensus       142 ~~~~lr~L~l~~~~~~~~~~~~l~~~~--~~l~~L~~L~l~~~~~~~l-p----~~i~~l~~L~~L~l~~~~l~~lp-~~  213 (394)
                      ..++|+.|.+.++....    ..+..+  ..+++|++|++++|.+... +    ..+..+++|++|++++|.+..+| ..
T Consensus        89 ~~~~L~~L~l~~n~l~~----~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~  164 (310)
T 4glp_A           89 AYSRLKELTLEDLKITG----TMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQ  164 (310)
T ss_dssp             HHSCCCEEEEESCCCBS----CCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTS
T ss_pred             ccCceeEEEeeCCEecc----chhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHH
Confidence            34568888888877652    223222  6778888888888887632 2    33456778888888888877655 46


Q ss_pred             ccCCCCCcEEEcc-cCCccc---cch--hhccCccCcEEEeeCCCCCCCCCCC----CCCCCcCceeCccccC--CCcch
Q 037494          214 ICTLLNLETLEMP-AGYIDH---SPE--GIWMMQKLMHLNFDSITLPAPPKNY----SSSLKNLIFISALHPS--SCTPD  281 (394)
Q Consensus       214 l~~l~~L~~L~l~-~~~l~~---lp~--~i~~l~~L~~L~l~~~~~~~~~p~~----l~~l~~L~~L~~~~~~--~~~~~  281 (394)
                      ++.+++|++|+++ | .+..   ++.  .++.+++|++|+++ +|.+..++..    ++.+++|++|+++++.  ...|.
T Consensus       165 ~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~l~~L~~L~Ls-~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~  242 (310)
T 4glp_A          165 VRAFPALTSLDLSDN-PGLGERGLMAALCPHKFPAIQNLALR-NTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNP  242 (310)
T ss_dssp             CCCCTTCCEEECCSC-TTCHHHHHHTTSCTTSSCCCCSCBCC-SSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCS
T ss_pred             hccCCCCCEEECCCC-CCccchhhhHHHhhhcCCCCCEEECC-CCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchh
Confidence            7778888888888 7 4432   332  23577888888888 7776555442    3566788888888777  22355


Q ss_pred             hcCCC---CCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCccCCCCCCCCCCceEEEEecccCCC
Q 037494          282 ILSRL---PTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVLSEYQFPPSLIQLSLSNTELME  352 (394)
Q Consensus       282 ~l~~l---~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p~~~~~l~~L~~L~L~~~~l~~  352 (394)
                      .++.+   ++|+.|++++|.   ...+|..+.  ++|+.|++++ +++..+ |.+.. +++|+.|++++|+++.
T Consensus       243 ~~~~~~~~~~L~~L~Ls~N~---l~~lp~~~~--~~L~~L~Ls~-N~l~~~-~~~~~-l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          243 SAPRCMWSSALNSLNLSFAG---LEQVPKGLP--AKLRVLDLSS-NRLNRA-PQPDE-LPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CCSSCCCCTTCCCEECCSSC---CCSCCSCCC--SCCSCEECCS-CCCCSC-CCTTS-CCCCSCEECSSTTTSC
T ss_pred             hHHhccCcCcCCEEECCCCC---CCchhhhhc--CCCCEEECCC-CcCCCC-chhhh-CCCccEEECcCCCCCC
Confidence            55555   688999998885   336666553  7899999988 778877 65556 8999999999998753

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.64  E-value=3.7e-16  Score=154.44  Aligned_cols=177  Identities=18%  Similarity=0.181  Sum_probs=141.4

Q ss_pred             CceeEEEcCCCCCCCCcccccCcccccEEecCCCCCccccccccCCCCCcEEEcc-cCCccccchhhccCccCcEEEeeC
Q 037494          172 KYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLNFDS  250 (394)
Q Consensus       172 ~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~  250 (394)
                      .+|++|++++|.++.+|..+.  ++|++|++++|.++.+|   +.+++|++|+++ | .+..+|. +..  +|++|+++ 
T Consensus        59 ~~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls-  128 (571)
T 3cvr_A           59 NQFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVD-  128 (571)
T ss_dssp             TTCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECC-
T ss_pred             CCccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECC-
Confidence            389999999999998888764  78999999999999998   457899999999 8 8888887 655  89999999 


Q ss_pred             CCCCCCCCCCCCCCCcCceeCccccC-CCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCcc
Q 037494          251 ITLPAPPKNYSSSLKNLIFISALHPS-SCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRM  329 (394)
Q Consensus       251 ~~~~~~~p~~l~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L  329 (394)
                      +|.+..+|.   .+++|+.|++.+|. ...+.   .+++|+.|++++|.   ...+|. +.  ++|+.|+|++ +++..+
T Consensus       129 ~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~---L~~lp~-l~--~~L~~L~Ls~-N~L~~l  195 (571)
T 3cvr_A          129 NNQLTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQ---LTFLPE-LP--ESLEALDVST-NLLESL  195 (571)
T ss_dssp             SSCCSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC---CSCCCC-CC--TTCCEEECCS-SCCSSC
T ss_pred             CCcCCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCC---CCCcch-hh--CCCCEEECcC-CCCCch
Confidence            998877887   68899999999888 44443   56889999999985   334665 54  8999999998 677777


Q ss_pred             CCCCCCCCCCc-------eEEEEecccCCCCCcccccCCCCCCeEEEecccccC
Q 037494          330 VLSEYQFPPSL-------IQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFG  376 (394)
Q Consensus       330 ~p~~~~~l~~L-------~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~  376 (394)
                       |.+   ..+|       +.|+|++|+++. .+..+..+++|+.|++++|.+++
T Consensus       196 -p~~---~~~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~  244 (571)
T 3cvr_A          196 -PAV---PVRNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSS  244 (571)
T ss_dssp             -CCC---C--------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCH
T ss_pred             -hhH---HHhhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCC
Confidence             642   2356       999999999864 34456679999999999888764

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.64  E-value=9.2e-16  Score=131.41  Aligned_cols=153  Identities=16%  Similarity=0.150  Sum_probs=97.8

Q ss_pred             cCcccccEEecCCCCCccccccccCCCCCcEEEcc-cCCccccchhhccCccCcEEEeeCCCCCCC-CCCCCCCCCcCce
Q 037494          192 ENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITLPAP-PKNYSSSLKNLIF  269 (394)
Q Consensus       192 ~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~-~p~~l~~l~~L~~  269 (394)
                      +.+++|++|++++|.+..+| .+..+++|++|+++ | .+..++ .+..+++|++|+++ +|.+.. .|..+        
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~-~n~l~~~~~~~l--------  108 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIM-GKDVTSDKIPNL--------  108 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEE-CTTCBGGGSCCC--------
T ss_pred             hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeE-CCccCcccChhh--------
Confidence            55667777777777777776 67777777777777 6 555554 56667777777777 655332 33334        


Q ss_pred             eCccccCCCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCccCCCCCCCCCCceEEEEeccc
Q 037494          270 ISALHPSSCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVLSEYQFPPSLIQLSLSNTE  349 (394)
Q Consensus       270 L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p~~~~~l~~L~~L~L~~~~  349 (394)
                                    +.+++|+.|++++|.  .....+..+..+++|+.|++++|..+..+ |.+.. +++|+.|++++|+
T Consensus       109 --------------~~l~~L~~L~Ls~n~--i~~~~~~~l~~l~~L~~L~L~~n~~i~~~-~~l~~-l~~L~~L~l~~n~  170 (197)
T 4ezg_A          109 --------------SGLTSLTLLDISHSA--HDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKT-LPELKSLNIQFDG  170 (197)
T ss_dssp             --------------TTCTTCCEEECCSSB--CBGGGHHHHTTCSSCCEEECCSCTBCCCC-GGGGG-CSSCCEEECTTBC
T ss_pred             --------------cCCCCCCEEEecCCc--cCcHhHHHHhhCCCCCEEEccCCCCcccc-HhhcC-CCCCCEEECCCCC
Confidence                          445555555555554  44445555666666666666663335555 44455 7888888888888


Q ss_pred             CCCCCcccccCCCCCCeEEEecccccC
Q 037494          350 LMEDPMPMLERLPRLQVMKLKRNSYFG  376 (394)
Q Consensus       350 l~~~~~~~l~~l~~L~~L~l~~n~~~~  376 (394)
                      +..  ++.+..+++|++|++++|.+.+
T Consensus       171 i~~--~~~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          171 VHD--YRGIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             CCC--CTTGGGCSSCCEEEECBC----
T ss_pred             CcC--hHHhccCCCCCEEEeeCcccCC
Confidence            754  3467888888999888887643

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.63  E-value=6.5e-17  Score=153.40  Aligned_cols=244  Identities=12%  Similarity=0.021  Sum_probs=180.9

Q ss_pred             CCceEEEEEEeCCcchhh-----c-cCCCCCccEEEEecCCCccchh------cchhHHhccCCceeEEEcCCCCCCC--
Q 037494          121 LATVKRCFILEDLIEFIS-----L-EQSDMYLQSFLNHSSESDHLAL------IDCENFCENFKYLRVLNWGSAVLDQ--  186 (394)
Q Consensus       121 ~~~~r~L~l~~~~~~~~~-----~-~~~~~~lr~L~l~~~~~~~~~~------~~l~~~~~~l~~L~~L~l~~~~~~~--  186 (394)
                      ...+++|.+..+......     . ...+++|+.|.+.++....+..      ..+...+..+++|++|++++|.+..  
T Consensus        31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~  110 (386)
T 2ca6_A           31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA  110 (386)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred             CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence            345777887755444321     1 2578999999999876543221      1122234789999999999999885  


Q ss_pred             ---CcccccCcccccEEecCCCCCcc-----ccccccCC---------CCCcEEEcc-cCCcc--ccc---hhhccCccC
Q 037494          187 ---FPPGLENLFLLKYLQLNIPTLKC-----LPLLICTL---------LNLETLEMP-AGYID--HSP---EGIWMMQKL  243 (394)
Q Consensus       187 ---lp~~i~~l~~L~~L~l~~~~l~~-----lp~~l~~l---------~~L~~L~l~-~~~l~--~lp---~~i~~l~~L  243 (394)
                         +|..+..+++|++|++++|.+..     ++..+..+         ++|++|+++ | .+.  .+|   ..+..+++|
T Consensus       111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L  189 (386)
T 2ca6_A          111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN-RLENGSMKEWAKTFQSHRLL  189 (386)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS-CCTGGGHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC-CCCcHHHHHHHHHHHhCCCc
Confidence               67888999999999999999863     34444445         899999999 8 664  444   467789999


Q ss_pred             cEEEeeCCCCCC------CCCCCCCCCCcCceeCccccC------CCcchhcCCCCCCCeEEEeecCCccccc----hhh
Q 037494          244 MHLNFDSITLPA------PPKNYSSSLKNLIFISALHPS------SCTPDILSRLPTVQTLRISGDLSHYHSG----VSK  307 (394)
Q Consensus       244 ~~L~l~~~~~~~------~~p~~l~~l~~L~~L~~~~~~------~~~~~~l~~l~~L~~L~l~~~~~~~~~~----~~~  307 (394)
                      ++|+++ +|.+.      -.|..+..+++|++|++..|.      ...+..+..+++|+.|++++|.  ....    ++.
T Consensus       190 ~~L~L~-~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~--i~~~~~~~l~~  266 (386)
T 2ca6_A          190 HTVKMV-QNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL--LSARGAAAVVD  266 (386)
T ss_dssp             CEEECC-SSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC--CCHHHHHHHHH
T ss_pred             CEEECc-CCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC--CchhhHHHHHH
Confidence            999999 98765      234478899999999999887      2245678899999999999997  3332    566


Q ss_pred             hhcC--CCCCcEEEecCCCCCCc-----cCC-CC-CCCCCCceEEEEecccCCCCCc--cccc-CCCCCCeEEEec
Q 037494          308 SLCE--LHKLECLKLVNGSKLSR-----MVL-SE-YQFPPSLIQLSLSNTELMEDPM--PMLE-RLPRLQVMKLKR  371 (394)
Q Consensus       308 ~l~~--~~~L~~L~l~~~~~L~~-----L~p-~~-~~~l~~L~~L~L~~~~l~~~~~--~~l~-~l~~L~~L~l~~  371 (394)
                      .+..  +++|+.|+|++ +.+..     + | .+ .+ +++|+.|++++|++.....  ..+. .++.++.+.+..
T Consensus       267 ~l~~~~~~~L~~L~L~~-n~i~~~g~~~l-~~~l~~~-l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l~~  339 (386)
T 2ca6_A          267 AFSKLENIGLQTLRLQY-NEIELDAVRTL-KTVIDEK-MPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDE  339 (386)
T ss_dssp             HHHTCSSCCCCEEECCS-SCCBHHHHHHH-HHHHHHH-CTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTCCEECC
T ss_pred             HHhhccCCCeEEEECcC-CcCCHHHHHHH-HHHHHhc-CCCceEEEccCCcCCcchhHHHHHHHHhhhcCcchhhh
Confidence            7744  89999999998 55665     6 6 55 55 7999999999999977662  3333 466666666643

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.63  E-value=5.1e-16  Score=139.26  Aligned_cols=171  Identities=17%  Similarity=0.140  Sum_probs=145.3

Q ss_pred             CcccccEEecCCCCCccccccccCCCCCcEEEcc-cCCccccchhhccCccCcEEEeeCCCCCCCCCCCCCCCCcCceeC
Q 037494          193 NLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITLPAPPKNYSSSLKNLIFIS  271 (394)
Q Consensus       193 ~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~  271 (394)
                      .+.++..++++++.++.++ .+..+++|++|+++ | .+..+| .+..+++|++|+++ +|.+..+|+ ++.+++|+.|+
T Consensus        17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~-~N~i~~~~~-l~~l~~L~~L~   91 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLS-HNQISDLSP-LKDLTKLEELS   91 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECC-SSCCCCCGG-GTTCSSCCEEE
T ss_pred             HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCC-Ccccch-HHhhCCCCCEEECC-CCccCCChh-hccCCCCCEEE
Confidence            5677888899999999888 68889999999999 8 899998 78999999999999 999888887 99999999999


Q ss_pred             ccccCCCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCccCCCCCCCCCCceEEEEecccCC
Q 037494          272 ALHPSSCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVLSEYQFPPSLIQLSLSNTELM  351 (394)
Q Consensus       272 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p~~~~~l~~L~~L~L~~~~l~  351 (394)
                      +.++.....+.+.. ++|+.|++++|.  . ..++ .+..+++|+.|++++ +.+..+ |.+.. +++|+.|++++|++.
T Consensus        92 L~~N~l~~l~~~~~-~~L~~L~L~~N~--l-~~~~-~l~~l~~L~~L~Ls~-N~i~~~-~~l~~-l~~L~~L~L~~N~i~  163 (263)
T 1xeu_A           92 VNRNRLKNLNGIPS-ACLSRLFLDNNE--L-RDTD-SLIHLKNLEILSIRN-NKLKSI-VMLGF-LSKLEVLDLHGNEIT  163 (263)
T ss_dssp             CCSSCCSCCTTCCC-SSCCEEECCSSC--C-SBSG-GGTTCTTCCEEECTT-SCCCBC-GGGGG-CTTCCEEECTTSCCC
T ss_pred             CCCCccCCcCcccc-CcccEEEccCCc--c-CCCh-hhcCcccccEEECCC-CcCCCC-hHHcc-CCCCCEEECCCCcCc
Confidence            99998333334444 899999999996  3 3333 588999999999998 678777 66666 899999999999986


Q ss_pred             CCCcccccCCCCCCeEEEecccccCce
Q 037494          352 EDPMPMLERLPRLQVMKLKRNSYFGRK  378 (394)
Q Consensus       352 ~~~~~~l~~l~~L~~L~l~~n~~~~~~  378 (394)
                      ..  ..+..+++|+.|++++|.+....
T Consensus       164 ~~--~~l~~l~~L~~L~l~~N~~~~~~  188 (263)
T 1xeu_A          164 NT--GGLTRLKKVNWIDLTGQKCVNEP  188 (263)
T ss_dssp             BC--TTSTTCCCCCEEEEEEEEEECCC
T ss_pred             ch--HHhccCCCCCEEeCCCCcccCCc
Confidence            54  77899999999999999877654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.62  E-value=1.4e-15  Score=130.30  Aligned_cols=150  Identities=16%  Similarity=0.114  Sum_probs=104.7

Q ss_pred             ccCCceeEEEcCCCCCCCCcccccCcccccEEecCCCCCccccccccCCCCCcEEEcc-cCCccc-cchhhccCccCcEE
Q 037494          169 ENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDH-SPEGIWMMQKLMHL  246 (394)
Q Consensus       169 ~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~-lp~~i~~l~~L~~L  246 (394)
                      ..+++|+.|+++++.+..+| .+..+++|++|++++|.+..++ .++.+++|++|+++ | .+.. .|..++.+++|++|
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L  117 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGK-DVTSDKIPNLSGLTSLTLL  117 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECT-TCBGGGSCCCTTCTTCCEE
T ss_pred             hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECC-ccCcccChhhcCCCCCCEE
Confidence            56788999999999999888 6999999999999999887775 78999999999999 8 6664 67789999999999


Q ss_pred             EeeCCCCCCC-CCCCCCCCCcCceeCccccCCCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCC
Q 037494          247 NFDSITLPAP-PKNYSSSLKNLIFISALHPSSCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSK  325 (394)
Q Consensus       247 ~l~~~~~~~~-~p~~l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  325 (394)
                      +++ +|.+.. .|..++.+++|++|++.+|.                        ....++ .+..+++|+.|++++ +.
T Consensus       118 ~Ls-~n~i~~~~~~~l~~l~~L~~L~L~~n~------------------------~i~~~~-~l~~l~~L~~L~l~~-n~  170 (197)
T 4ezg_A          118 DIS-HSAHDDSILTKINTLPKVNSIDLSYNG------------------------AITDIM-PLKTLPELKSLNIQF-DG  170 (197)
T ss_dssp             ECC-SSBCBGGGHHHHTTCSSCCEEECCSCT------------------------BCCCCG-GGGGCSSCCEEECTT-BC
T ss_pred             Eec-CCccCcHhHHHHhhCCCCCEEEccCCC------------------------CccccH-hhcCCCCCCEEECCC-CC
Confidence            999 876443 33344455555555554443                        122233 344555555555554 33


Q ss_pred             CCccCCCCCCCCCCceEEEEecccC
Q 037494          326 LSRMVLSEYQFPPSLIQLSLSNTEL  350 (394)
Q Consensus       326 L~~L~p~~~~~l~~L~~L~L~~~~l  350 (394)
                      +..+ +.+.. +++|+.|++++|++
T Consensus       171 i~~~-~~l~~-l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          171 VHDY-RGIED-FPKLNQLYAFSQTI  193 (197)
T ss_dssp             CCCC-TTGGG-CSSCCEEEECBC--
T ss_pred             CcCh-HHhcc-CCCCCEEEeeCccc
Confidence            4443 33334 56666666666664

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.61  E-value=1.1e-16  Score=150.38  Aligned_cols=233  Identities=10%  Similarity=0.038  Sum_probs=160.6

Q ss_pred             CCCCCccEEEEecCCCccchhcchhHHhccCC-ceeEEEcCCCCCCCC-cccccCc-----ccccEEecCCCCCcccccc
Q 037494          141 QSDMYLQSFLNHSSESDHLALIDCENFCENFK-YLRVLNWGSAVLDQF-PPGLENL-----FLLKYLQLNIPTLKCLPLL  213 (394)
Q Consensus       141 ~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~-~L~~L~l~~~~~~~l-p~~i~~l-----~~L~~L~l~~~~l~~lp~~  213 (394)
                      ...++|+.|.+.++.........+...+..++ +|++|++++|.+... +..+..+     ++|++|++++|.+...+..
T Consensus        19 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~   98 (362)
T 3goz_A           19 SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSD   98 (362)
T ss_dssp             TSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH
T ss_pred             hCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHH
Confidence            34455999999998876322222324448888 899999999998854 4556654     8999999999998865433


Q ss_pred             -----ccCC-CCCcEEEcc-cCCccccch-h----hcc-CccCcEEEeeCCCCCCC-----CCCCCCCCC-cCceeCccc
Q 037494          214 -----ICTL-LNLETLEMP-AGYIDHSPE-G----IWM-MQKLMHLNFDSITLPAP-----PKNYSSSLK-NLIFISALH  274 (394)
Q Consensus       214 -----l~~l-~~L~~L~l~-~~~l~~lp~-~----i~~-l~~L~~L~l~~~~~~~~-----~p~~l~~l~-~L~~L~~~~  274 (394)
                           +..+ ++|++|+++ | .+...+. .    +.. .++|++|+++ +|.+..     ++..+..++ +|++|++.+
T Consensus        99 ~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls-~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~  176 (362)
T 3goz_A           99 ELVKTLAAIPFTITVLDLGWN-DFSSKSSSEFKQAFSNLPASITSLNLR-GNDLGIKSSDELIQILAAIPANVNSLNLRG  176 (362)
T ss_dssp             HHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHTTSCTTCCEEECT-TSCGGGSCHHHHHHHHHTSCTTCCEEECTT
T ss_pred             HHHHHHHhCCCCccEEECcCC-cCCcHHHHHHHHHHHhCCCceeEEEcc-CCcCCHHHHHHHHHHHhcCCccccEeeecC
Confidence                 4455 799999999 8 7776654 2    333 3689999999 887542     223344554 899999998


Q ss_pred             cC--CCcch----hcCCC-CCCCeEEEeecC--CccccchhhhhcCC-CCCcEEEecCCCCCCccC----C-CCCCCCCC
Q 037494          275 PS--SCTPD----ILSRL-PTVQTLRISGDL--SHYHSGVSKSLCEL-HKLECLKLVNGSKLSRMV----L-SEYQFPPS  339 (394)
Q Consensus       275 ~~--~~~~~----~l~~l-~~L~~L~l~~~~--~~~~~~~~~~l~~~-~~L~~L~l~~~~~L~~L~----p-~~~~~l~~  339 (394)
                      |.  ...+.    .+... ++|+.|++++|.  ......++..+... ++|+.|++++ +.+....    + .+.. +++
T Consensus       177 n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~-N~l~~~~~~~l~~~~~~-l~~  254 (362)
T 3goz_A          177 NNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCL-NCLHGPSLENLKLLKDS-LKH  254 (362)
T ss_dssp             SCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCS-SCCCCCCHHHHHHTTTT-TTT
T ss_pred             CCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcC-CCCCcHHHHHHHHHHhc-CCC
Confidence            87  22322    34455 589999999986  11122366666664 5899999998 4454431    2 4455 789


Q ss_pred             ceEEEEecccCCCCCcc-------cccCCCCCCeEEEecccccCc
Q 037494          340 LIQLSLSNTELMEDPMP-------MLERLPRLQVMKLKRNSYFGR  377 (394)
Q Consensus       340 L~~L~L~~~~l~~~~~~-------~l~~l~~L~~L~l~~n~~~~~  377 (394)
                      |+.|++++|.+......       .+..+++|+.|++++|.+.+.
T Consensus       255 L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          255 LQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             CSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             ccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            99999999985433322       356778889999988887654

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.61  E-value=3.3e-15  Score=128.98  Aligned_cols=175  Identities=18%  Similarity=0.160  Sum_probs=106.9

Q ss_pred             eEEEcCCCCCCCCcccccCcccccEEecCCCCCcccccc-ccCCCCCcEEEcc-cCCccccchh-hccCccCcEEEeeCC
Q 037494          175 RVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLL-ICTLLNLETLEMP-AGYIDHSPEG-IWMMQKLMHLNFDSI  251 (394)
Q Consensus       175 ~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~-l~~l~~L~~L~l~-~~~l~~lp~~-i~~l~~L~~L~l~~~  251 (394)
                      +.++.+++++..+|..+  ..+|++|++++|.++.+|.. ++.+++|++|+++ | .+..+|.. +..+++|++|+++ +
T Consensus        10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls-~   85 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLS-T   85 (208)
T ss_dssp             TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECC-S
T ss_pred             CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECC-C
Confidence            34556666666666444  34667777777766666544 4566777777777 6 66666553 4566777777777 6


Q ss_pred             CCCCCCCCC-CCCCCcCceeCccccC-CCcc-hhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCc
Q 037494          252 TLPAPPKNY-SSSLKNLIFISALHPS-SCTP-DILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSR  328 (394)
Q Consensus       252 ~~~~~~p~~-l~~l~~L~~L~~~~~~-~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~  328 (394)
                      |.+..+|+. ++.+++|++|++.++. ...+ ..++.+++|+.|++++|.  .....+..+..+++|+.|+++++     
T Consensus        86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~--l~~~~~~~~~~l~~L~~L~l~~N-----  158 (208)
T 2o6s_A           86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ--LKSVPDGVFDRLTSLQYIWLHDN-----  158 (208)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CSCCCTTTTTTCTTCCEEECCSC-----
T ss_pred             CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc--cceeCHHHhccCCCccEEEecCC-----
Confidence            665555544 4666666666666665 2222 235666777777777764  33222334566777777777652     


Q ss_pred             cCCCCCCCCCCceEEEEecccCCCCCcccccCCCC
Q 037494          329 MVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPR  363 (394)
Q Consensus       329 L~p~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~  363 (394)
                        |+.+. +++|+.|+++.|++....++.++.++.
T Consensus       159 --~~~~~-~~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          159 --PWDCT-CPGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             --CBCCC-TTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             --CeecC-CCCHHHHHHHHHhCCceeeccCccccC
Confidence              13344 667777777777776666666665543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.61  E-value=3.7e-17  Score=158.64  Aligned_cols=85  Identities=19%  Similarity=0.049  Sum_probs=38.3

Q ss_pred             CCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCC-cccc-cCcc----cccEEecCCCCCc-----cc
Q 037494          142 SDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQF-PPGL-ENLF----LLKYLQLNIPTLK-----CL  210 (394)
Q Consensus       142 ~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l-p~~i-~~l~----~L~~L~l~~~~l~-----~l  210 (394)
                      .++++++|.+.++.........++..+..+++|++|++++|.+... +..+ ..+.    +|++|++++|.+.     .+
T Consensus        26 ~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l  105 (461)
T 1z7x_W           26 LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL  105 (461)
T ss_dssp             HHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             hcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHH
Confidence            4445555555555543211112233335555555555555554321 1111 1222    3555555555544     23


Q ss_pred             cccccCCCCCcEEEcc
Q 037494          211 PLLICTLLNLETLEMP  226 (394)
Q Consensus       211 p~~l~~l~~L~~L~l~  226 (394)
                      |..+..+++|++|+++
T Consensus       106 ~~~l~~~~~L~~L~Ls  121 (461)
T 1z7x_W          106 SSTLRTLPTLQELHLS  121 (461)
T ss_dssp             HHHTTSCTTCCEEECC
T ss_pred             HHHHccCCceeEEECC
Confidence            4445555555555555

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.60  E-value=4.7e-15  Score=138.64  Aligned_cols=209  Identities=12%  Similarity=0.072  Sum_probs=152.4

Q ss_pred             cEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCcc-cccCcccccEEecCCCCCc-cccc-cccCCCCCcEE
Q 037494          147 QSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPP-GLENLFLLKYLQLNIPTLK-CLPL-LICTLLNLETL  223 (394)
Q Consensus       147 r~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~l~-~lp~-~l~~l~~L~~L  223 (394)
                      +++...++...     .+|.-+  .+++++|++++|.++.+|+ ++.++++|++|+|++|.+. .+|. .+.++++++.+
T Consensus        12 ~~v~C~~~~Lt-----~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~   84 (350)
T 4ay9_X           12 RVFLCQESKVT-----EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEI   84 (350)
T ss_dssp             TEEEEESTTCC-----SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEE
T ss_pred             CEEEecCCCCC-----ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhh
Confidence            45666655554     333211  3679999999999999985 6899999999999999874 5664 46788888875


Q ss_pred             Ecc-cCCccccch-hhccCccCcEEEeeCCCCCCCCCCC-CCCCCcCceeCccccC--CCcc-hhcCCC-CCCCeEEEee
Q 037494          224 EMP-AGYIDHSPE-GIWMMQKLMHLNFDSITLPAPPKNY-SSSLKNLIFISALHPS--SCTP-DILSRL-PTVQTLRISG  296 (394)
Q Consensus       224 ~l~-~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~-l~~l~~L~~L~~~~~~--~~~~-~~l~~l-~~L~~L~l~~  296 (394)
                      ... ++.+..+|+ .+..+++|++|+++ +|.+..+|+. .....++..|.+..+.  ...+ ..+..+ ..++.|++++
T Consensus        85 l~~~~N~l~~l~~~~f~~l~~L~~L~l~-~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~  163 (350)
T 4ay9_X           85 RIEKANNLLYINPEAFQNLPNLQYLLIS-NTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK  163 (350)
T ss_dssp             EEEEETTCCEECTTSBCCCTTCCEEEEE-EECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS
T ss_pred             hcccCCcccccCchhhhhcccccccccc-ccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc
Confidence            554 438888864 57899999999999 9987777753 4455667777776654  2222 234444 3688899999


Q ss_pred             cCCccccchhhhhcCCCCCcEEEecCCCCCCccCC--CCCCCCCCceEEEEecccCCCCCcccccCCCCCCeEEEec
Q 037494          297 DLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVL--SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKR  371 (394)
Q Consensus       297 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p--~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~  371 (394)
                      |.   ...++..+....+|+.|.+.+++.++.+ |  .+.. +++|+.|++++|+++..+...   +.+|+.|.+.+
T Consensus       164 N~---i~~i~~~~f~~~~L~~l~l~~~n~l~~i-~~~~f~~-l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~  232 (350)
T 4ay9_X          164 NG---IQEIHNSAFNGTQLDELNLSDNNNLEEL-PNDVFHG-ASGPVILDISRTRIHSLPSYG---LENLKKLRARS  232 (350)
T ss_dssp             SC---CCEECTTSSTTEEEEEEECTTCTTCCCC-CTTTTTT-EECCSEEECTTSCCCCCCSSS---CTTCCEEECTT
T ss_pred             cc---ccCCChhhccccchhHHhhccCCcccCC-CHHHhcc-CcccchhhcCCCCcCccChhh---hccchHhhhcc
Confidence            84   4566666556678999999877889999 6  6788 999999999999987655433   55666666544

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.60  E-value=2.8e-16  Score=147.72  Aligned_cols=227  Identities=11%  Similarity=0.027  Sum_probs=124.2

Q ss_pred             CceEEEEEEeCCcchhhc------cCCCC-CccEEEEecCCCccchhcchhHHhccC-CceeEEEcCCCCCCCCc-cc--
Q 037494          122 ATVKRCFILEDLIEFISL------EQSDM-YLQSFLNHSSESDHLALIDCENFCENF-KYLRVLNWGSAVLDQFP-PG--  190 (394)
Q Consensus       122 ~~~r~L~l~~~~~~~~~~------~~~~~-~lr~L~l~~~~~~~~~~~~l~~~~~~l-~~L~~L~l~~~~~~~lp-~~--  190 (394)
                      ..+++|.+..+.....+.      ...++ +|+.|.+.++.........+...+... ++|++|++++|.+...+ ..  
T Consensus        22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~  101 (362)
T 3goz_A           22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV  101 (362)
T ss_dssp             TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred             CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence            346667766555444332      13455 677777777766521111122222232 77777777777766433 32  


Q ss_pred             --ccCc-ccccEEecCCCCCcccccc-----ccC-CCCCcEEEcc-cCCcc-----ccchhhccCc-cCcEEEeeCCCCC
Q 037494          191 --LENL-FLLKYLQLNIPTLKCLPLL-----ICT-LLNLETLEMP-AGYID-----HSPEGIWMMQ-KLMHLNFDSITLP  254 (394)
Q Consensus       191 --i~~l-~~L~~L~l~~~~l~~lp~~-----l~~-l~~L~~L~l~-~~~l~-----~lp~~i~~l~-~L~~L~l~~~~~~  254 (394)
                        +..+ ++|++|++++|.+...+..     +.. ..+|++|+++ | .+.     .++..+..++ +|++|+++ +|.+
T Consensus       102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls-~n~l  179 (362)
T 3goz_A          102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKSSDELIQILAAIPANVNSLNLR-GNNL  179 (362)
T ss_dssp             HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECT-TSCG
T ss_pred             HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCC-cCCHHHHHHHHHHHhcCCccccEeeec-CCCC
Confidence              3333 6777777777777655421     233 2477777777 6 555     3444455555 77777777 7664


Q ss_pred             CCCCC-----CCCCC-CcCceeCccccC-CC-----cchhcCCC-CCCCeEEEeecCC--ccccchhhhhcCCCCCcEEE
Q 037494          255 APPKN-----YSSSL-KNLIFISALHPS-SC-----TPDILSRL-PTVQTLRISGDLS--HYHSGVSKSLCELHKLECLK  319 (394)
Q Consensus       255 ~~~p~-----~l~~l-~~L~~L~~~~~~-~~-----~~~~l~~l-~~L~~L~l~~~~~--~~~~~~~~~l~~~~~L~~L~  319 (394)
                      .....     .+... ++|++|++.+|. ..     .+..+..+ ++|+.|++++|.-  .....+...+..+++|+.|+
T Consensus       180 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~  259 (362)
T 3goz_A          180 ASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVY  259 (362)
T ss_dssp             GGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEE
T ss_pred             chhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEE
Confidence            43322     12333 477777777766 22     33344442 4677777777751  11122334455667777777


Q ss_pred             ecCCC-------CCCccCC-CCCCCCCCceEEEEecccCCC
Q 037494          320 LVNGS-------KLSRMVL-SEYQFPPSLIQLSLSNTELME  352 (394)
Q Consensus       320 l~~~~-------~L~~L~p-~~~~~l~~L~~L~L~~~~l~~  352 (394)
                      ++++.       .+..+ + .+.. +++|+.|++++|++..
T Consensus       260 L~~n~l~~i~~~~~~~l-~~~~~~-l~~L~~LdL~~N~l~~  298 (362)
T 3goz_A          260 LDYDIVKNMSKEQCKAL-GAAFPN-IQKIILVDKNGKEIHP  298 (362)
T ss_dssp             EEHHHHTTCCHHHHHHH-HTTSTT-CCEEEEECTTSCBCCG
T ss_pred             eccCCccccCHHHHHHH-HHHhcc-CCceEEEecCCCcCCC
Confidence            77621       12222 3 4455 6677777777777643

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.59  E-value=7.3e-15  Score=137.35  Aligned_cols=227  Identities=13%  Similarity=0.020  Sum_probs=135.5

Q ss_pred             EEeCCcchhhccCCCCCccEEEEecCCCccchhcch-hHHhccCCceeEEEcCCCCCC-CCc-ccccCcccccE-EecCC
Q 037494          129 ILEDLIEFISLEQSDMYLQSFLNHSSESDHLALIDC-ENFCENFKYLRVLNWGSAVLD-QFP-PGLENLFLLKY-LQLNI  204 (394)
Q Consensus       129 l~~~~~~~~~~~~~~~~lr~L~l~~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~-~lp-~~i~~l~~L~~-L~l~~  204 (394)
                      ...+....+|... .++++.|.+.++.+.     .+ ++.|.++++|++|++++|.+. .+| ..+.++++++. +.+.+
T Consensus        16 C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~-----~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~   89 (350)
T 4ay9_X           16 CQESKVTEIPSDL-PRNAIELRFVLTKLR-----VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   89 (350)
T ss_dssp             EESTTCCSCCTTC-CTTCSEEEEESCCCS-----EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred             ecCCCCCccCcCc-CCCCCEEEccCCcCC-----CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence            3333444454432 356777777777665     34 233477777777777777754 344 34566766654 44455


Q ss_pred             CCCcccc-ccccCCCCCcEEEcc-cCCccccch-hhccCccCcEEEeeCCC-CCCCCCCC-CCCC-CcCceeCccccC-C
Q 037494          205 PTLKCLP-LLICTLLNLETLEMP-AGYIDHSPE-GIWMMQKLMHLNFDSIT-LPAPPKNY-SSSL-KNLIFISALHPS-S  277 (394)
Q Consensus       205 ~~l~~lp-~~l~~l~~L~~L~l~-~~~l~~lp~-~i~~l~~L~~L~l~~~~-~~~~~p~~-l~~l-~~L~~L~~~~~~-~  277 (394)
                      |.+..+| ..+..+++|++|+++ | .+..+|. .+....++..+++. ++ .+..+|.. +..+ ..++.|.+.++. .
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~-~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~  167 (350)
T 4ay9_X           90 NNLLYINPEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQ-DNINIHTIERNSFVGLSFESVILWLNKNGIQ  167 (350)
T ss_dssp             TTCCEECTTSBCCCTTCCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEE-SCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             CcccccCchhhhhcccccccccccc-ccccCCchhhcccchhhhhhhc-cccccccccccchhhcchhhhhhcccccccc
Confidence            6777664 345677777777777 6 6666654 34455566777776 43 35555543 3443 356677777666 4


Q ss_pred             CcchhcCCCCCCCeEEEeecCCccccchhh-hhcCCCCCcEEEecCCCCCCccCC-CCCCCCCCceEEEEecccCCCCCc
Q 037494          278 CTPDILSRLPTVQTLRISGDLSHYHSGVSK-SLCELHKLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPM  355 (394)
Q Consensus       278 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l~~~~~  355 (394)
                      ..+.......+|+.|.+.++.  ....+|. .+..+++|+.|++++ ++++.+ | ..   +.+|+.|.+.++. ....+
T Consensus       168 ~i~~~~f~~~~L~~l~l~~~n--~l~~i~~~~f~~l~~L~~LdLs~-N~l~~l-p~~~---~~~L~~L~~l~~~-~l~~l  239 (350)
T 4ay9_X          168 EIHNSAFNGTQLDELNLSDNN--NLEELPNDVFHGASGPVILDISR-TRIHSL-PSYG---LENLKKLRARSTY-NLKKL  239 (350)
T ss_dssp             EECTTSSTTEEEEEEECTTCT--TCCCCCTTTTTTEECCSEEECTT-SCCCCC-CSSS---CTTCCEEECTTCT-TCCCC
T ss_pred             CCChhhccccchhHHhhccCC--cccCCCHHHhccCcccchhhcCC-CCcCcc-Chhh---hccchHhhhccCC-CcCcC
Confidence            444455555567777776543  4555553 456677777777776 567776 5 32   4456666655554 23344


Q ss_pred             ccccCCCCCCeEEEec
Q 037494          356 PMLERLPRLQVMKLKR  371 (394)
Q Consensus       356 ~~l~~l~~L~~L~l~~  371 (394)
                      |.+..+++|+.+++.+
T Consensus       240 P~l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          240 PTLEKLVALMEASLTY  255 (350)
T ss_dssp             CCTTTCCSCCEEECSC
T ss_pred             CCchhCcChhhCcCCC
Confidence            5667777777777743

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.59  E-value=3.9e-17  Score=158.48  Aligned_cols=230  Identities=13%  Similarity=0.011  Sum_probs=131.6

Q ss_pred             CCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCC-ccccc-----CcccccEEecCCCCCcc-----cc
Q 037494          143 DMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQF-PPGLE-----NLFLLKYLQLNIPTLKC-----LP  211 (394)
Q Consensus       143 ~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l-p~~i~-----~l~~L~~L~l~~~~l~~-----lp  211 (394)
                      .++|+.|.+.++.........++..+..+++|++|++++|.+... +..+.     ..++|++|++++|.+..     +|
T Consensus       141 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~  220 (461)
T 1z7x_W          141 QCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLC  220 (461)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHH
T ss_pred             CCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHH
Confidence            345666666666554211122333345666777777776665421 12221     24467777777766654     45


Q ss_pred             ccccCCCCCcEEEcc-cCCcccc-----chh-hccCccCcEEEeeCCCCCCC-----CCCCCCCCCcCceeCccccC--C
Q 037494          212 LLICTLLNLETLEMP-AGYIDHS-----PEG-IWMMQKLMHLNFDSITLPAP-----PKNYSSSLKNLIFISALHPS--S  277 (394)
Q Consensus       212 ~~l~~l~~L~~L~l~-~~~l~~l-----p~~-i~~l~~L~~L~l~~~~~~~~-----~p~~l~~l~~L~~L~~~~~~--~  277 (394)
                      ..+..+++|++|+++ | .+...     ++. ...+++|++|+++ +|.+..     ++..+..+++|++|++.++.  .
T Consensus       221 ~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~L~-~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~  298 (461)
T 1z7x_W          221 GIVASKASLRELALGSN-KLGDVGMAELCPGLLHPSSRLRTLWIW-ECGITAKGCGDLCRVLRAKESLKELSLAGNELGD  298 (461)
T ss_dssp             HHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECT-TSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHH
T ss_pred             HHHHhCCCccEEeccCC-cCChHHHHHHHHHHhcCCCCceEEECc-CCCCCHHHHHHHHHHHhhCCCcceEECCCCCCch
Confidence            556666777777777 6 44432     122 2246677777777 666444     44445556777777777665  1


Q ss_pred             C----cchhcC-CCCCCCeEEEeecCCcccc----chhhhhcCCCCCcEEEecCCCCCCccC----C-CCCCCCCCceEE
Q 037494          278 C----TPDILS-RLPTVQTLRISGDLSHYHS----GVSKSLCELHKLECLKLVNGSKLSRMV----L-SEYQFPPSLIQL  343 (394)
Q Consensus       278 ~----~~~~l~-~l~~L~~L~l~~~~~~~~~----~~~~~l~~~~~L~~L~l~~~~~L~~L~----p-~~~~~l~~L~~L  343 (394)
                      .    ....+. ..++|+.|++++|.  ...    .++..+..+++|+.|+++++ .+....    . .+....++|+.|
T Consensus       299 ~~~~~l~~~l~~~~~~L~~L~L~~n~--l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L  375 (461)
T 1z7x_W          299 EGARLLCETLLEPGCQLESLWVKSCS--FTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVL  375 (461)
T ss_dssp             HHHHHHHHHHTSTTCCCCEEECTTSC--CBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred             HHHHHHHHHhccCCccceeeEcCCCC--CchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEE
Confidence            1    111222 22577777777775  222    35666667778888888763 333221    1 111114688888


Q ss_pred             EEecccCCC----CCcccccCCCCCCeEEEecccccCc
Q 037494          344 SLSNTELME----DPMPMLERLPRLQVMKLKRNSYFGR  377 (394)
Q Consensus       344 ~L~~~~l~~----~~~~~l~~l~~L~~L~l~~n~~~~~  377 (394)
                      ++++|+++.    ..+..+..+++|++|++++|.+.+.
T Consensus       376 ~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~  413 (461)
T 1z7x_W          376 WLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA  413 (461)
T ss_dssp             ECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred             ECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence            888888753    2344566788899999988877654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.56  E-value=1.6e-17  Score=164.79  Aligned_cols=176  Identities=19%  Similarity=0.164  Sum_probs=90.9

Q ss_pred             ccCCceeEEEcCCCCCCCCcccccCcccccEEecCCCC--------------CccccccccCCCCCcEEE-cc-cCCccc
Q 037494          169 ENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPT--------------LKCLPLLICTLLNLETLE-MP-AGYIDH  232 (394)
Q Consensus       169 ~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~--------------l~~lp~~l~~l~~L~~L~-l~-~~~l~~  232 (394)
                      ...++|+.|++++|.++.+|+.++++++|+.|+++++.              ....|..++.+.+|+.|+ ++ + .+..
T Consensus       346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n-~~~~  424 (567)
T 1dce_A          346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA-YLDD  424 (567)
T ss_dssp             STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH-HHHH
T ss_pred             ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhc-ccch
Confidence            44566667777777777777777777777777765542              123344455556666665 33 3 3332


Q ss_pred             cch------hhcc--CccCcEEEeeCCCCCCCCCCCCCCCCcCceeCccccC-CCcchhcCCCCCCCeEEEeecCCcccc
Q 037494          233 SPE------GIWM--MQKLMHLNFDSITLPAPPKNYSSSLKNLIFISALHPS-SCTPDILSRLPTVQTLRISGDLSHYHS  303 (394)
Q Consensus       233 lp~------~i~~--l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~  303 (394)
                      ++.      .+..  ...|+.|+++ +|.+..+|. ++.+++|+.|++.++. ...|..++.+++|+.|++++|      
T Consensus       425 L~~l~l~~n~i~~l~~~~L~~L~Ls-~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N------  496 (567)
T 1dce_A          425 LRSKFLLENSVLKMEYADVRVLHLA-HKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN------  496 (567)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSEEECT-TSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS------
T ss_pred             hhhhhhhcccccccCccCceEEEec-CCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCC------
Confidence            221      1111  1235566666 555555543 5555555555555544 334444444455555555444      


Q ss_pred             chhhhhcCCCCCcEEEecCCCCCCccCCCCCCCCCCceEEEEecccCCCCC-cccccCCCCCCeEEEecccccC
Q 037494          304 GVSKSLCELHKLECLKLVNGSKLSRMVLSEYQFPPSLIQLSLSNTELMEDP-MPMLERLPRLQVMKLKRNSYFG  376 (394)
Q Consensus       304 ~~~~~l~~~~~L~~L~l~~~~~L~~L~p~~~~~l~~L~~L~L~~~~l~~~~-~~~l~~l~~L~~L~l~~n~~~~  376 (394)
                                           .+..+ |.++. +++|+.|+|++|+++... +..++.+++|+.|++++|.+++
T Consensus       497 ---------------------~l~~l-p~l~~-l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~  547 (567)
T 1dce_A          497 ---------------------ALENV-DGVAN-LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ  547 (567)
T ss_dssp             ---------------------CCCCC-GGGTT-CSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             ---------------------CCCCC-cccCC-CCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence                                 34444 33334 455555555555554443 4445555555555555555444

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.55  E-value=2.8e-16  Score=157.30  Aligned_cols=243  Identities=9%  Similarity=0.031  Sum_probs=133.2

Q ss_pred             CCceEEEEEEeCCcchhhc--cCC-CC-CccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCC-----Ccccc
Q 037494          121 LATVKRCFILEDLIEFISL--EQS-DM-YLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQ-----FPPGL  191 (394)
Q Consensus       121 ~~~~r~L~l~~~~~~~~~~--~~~-~~-~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~-----lp~~i  191 (394)
                      ...++.|.+..+...+...  ... ++ +|++|.+.++...  ....+..+...+++|++|++++|.+..     ++...
T Consensus       111 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~--~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~  188 (592)
T 3ogk_B          111 LRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGF--TTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELA  188 (592)
T ss_dssp             CTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEE--EHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHH
T ss_pred             CCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCc--CHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHH
Confidence            3456777777443322111  111 22 3777777776532  122344554677888888888777542     23344


Q ss_pred             cCcccccEEecCCCCCc-----cccccccCCCCCcEEEcc-cCCccccchhhccCccCcEEEeeCCCC-C---CCCCCCC
Q 037494          192 ENLFLLKYLQLNIPTLK-----CLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITL-P---APPKNYS  261 (394)
Q Consensus       192 ~~l~~L~~L~l~~~~l~-----~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~-~---~~~p~~l  261 (394)
                      ..+++|++|++++|.+.     .++..+.++++|++|+++ | .+..+|..+..+++|++|+++ .+. .   ...+..+
T Consensus       189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~l~~~~~~~~~L~~L~l~-~~~~~~~~~~~~~~l  266 (592)
T 3ogk_B          189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF-EILELVGFFKAAANLEEFCGG-SLNEDIGMPEKYMNL  266 (592)
T ss_dssp             HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC-BGGGGHHHHHHCTTCCEEEEC-BCCCCTTCTTSSSCC
T ss_pred             hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc-cHHHHHHHHhhhhHHHhhccc-ccccccchHHHHHHh
Confidence            56677788888777664     344445667778888887 7 666677777777777777776 432 1   1222233


Q ss_pred             CCCCcCceeCccccC-CCcchh-------------------------cCCCCCCCeEEEeecCCccccchhhhhcCCCCC
Q 037494          262 SSLKNLIFISALHPS-SCTPDI-------------------------LSRLPTVQTLRISGDLSHYHSGVSKSLCELHKL  315 (394)
Q Consensus       262 ~~l~~L~~L~~~~~~-~~~~~~-------------------------l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L  315 (394)
                      +.+++|+.|.+..+. ...+..                         +..+++|+.|++.++-  ....++.....+++|
T Consensus       267 ~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~--~~~~l~~~~~~~~~L  344 (592)
T 3ogk_B          267 VFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVI--GDRGLEVLAQYCKQL  344 (592)
T ss_dssp             CCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGG--HHHHHHHHHHHCTTC
T ss_pred             hccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCcc--CHHHHHHHHHhCCCC
Confidence            444444444443332 223333                         3455555555555321  222233333445556


Q ss_pred             cEEEecC----------CCCCCccC-C-CCCCCCCCceEEEEecccCCCCCcccccC-CCCCCeEEEe
Q 037494          316 ECLKLVN----------GSKLSRMV-L-SEYQFPPSLIQLSLSNTELMEDPMPMLER-LPRLQVMKLK  370 (394)
Q Consensus       316 ~~L~l~~----------~~~L~~L~-p-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~-l~~L~~L~l~  370 (394)
                      +.|++++          |+.+..-. + .... +++|++|+++.+.++...+..++. +++|+.|+++
T Consensus       345 ~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~-~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~  411 (592)
T 3ogk_B          345 KRLRIERGADEQGMEDEEGLVSQRGLIALAQG-CQELEYMAVYVSDITNESLESIGTYLKNLCDFRLV  411 (592)
T ss_dssp             CEEEEECCCCSSTTSSTTCCCCHHHHHHHHHH-CTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEE
T ss_pred             CEEEeecCccccccccccCccCHHHHHHHHhh-CccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEe
Confidence            6666652          23332210 1 1223 678888888777765555555554 7888888886

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=99.55  E-value=1.1e-15  Score=151.37  Aligned_cols=96  Identities=22%  Similarity=0.277  Sum_probs=81.8

Q ss_pred             CchhHHHHHHhcccCCCchhhHHHhc-----------cccccCCCceechHHHHHHHHhc--CCCC-----CChHHHHHH
Q 037494            5 GEAILTVWRQIYSVMELPFHLKVYCI-----------YLCVFCPSIEISTRQLCQLWIAE--GFIP-----YNSEETAEY   66 (394)
Q Consensus         5 ~~~i~~~lk~~~SY~~L~~~~k~cfl-----------~~~~Fp~~~~i~~~~Li~~wia~--gfi~-----~~~~~~~~~   66 (394)
                      .++|.++++  +||++||.++|.||+           |||+||+|+.|+    |++|+|+  ||+.     ...+++++ 
T Consensus       360 ~~~i~~~l~--~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-  432 (549)
T 2a5y_B          360 LVGVECITP--YSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-  432 (549)
T ss_dssp             SSTTCCCSS--SSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-
T ss_pred             HHHHHHHHh--cccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-
Confidence            456788888  999999999999999           999999999998    8999999  9996     34788888 


Q ss_pred             HHHHHHhcCceeeeecCCCCcEeEEEcCHHHHHHHHHHhcccCc
Q 037494           67 YLKELIHRGFIQVSKRRAGGTIKACYVPSLVYYSLLLVAEKTRF  110 (394)
Q Consensus        67 ~l~~L~~~~ll~~~~~~~~g~~~~~~mhdli~~l~~~~~~~~~~  110 (394)
                      ||++|++++|++....+   ...+|+|||++|++|+.+++++++
T Consensus       433 ~l~~L~~rsLl~~~~~~---~~~~~~mHdlv~~~a~~~~~~~~~  473 (549)
T 2a5y_B          433 RLKRLSKRGALLSGKRM---PVLTFKIDHIIHMFLKHVVDAQTI  473 (549)
T ss_dssp             HHHHTTTBSSCSEEECS---SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred             HHHHHHHcCCeeEecCC---CceEEEeChHHHHHHHHHHHHHHH
Confidence            99999999999987653   336799999999999999887653

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.55  E-value=3.6e-16  Score=156.48  Aligned_cols=247  Identities=13%  Similarity=0.045  Sum_probs=141.0

Q ss_pred             CCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCC-----CCcccccCcccccEEecCCCCCccccc----
Q 037494          142 SDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLD-----QFPPGLENLFLLKYLQLNIPTLKCLPL----  212 (394)
Q Consensus       142 ~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~-----~lp~~i~~l~~L~~L~l~~~~l~~lp~----  212 (394)
                      .+++|+.|.+.++.........++.++..+++|++|+++++.++     .++..+.++++|+.|++++|.+..+|.    
T Consensus       162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~  241 (592)
T 3ogk_B          162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKA  241 (592)
T ss_dssp             HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHH
T ss_pred             hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhh
Confidence            45666666666654321000002333344555555555555543     122233344555555555554444443    


Q ss_pred             -----------------------cccCCCCCcEEEcc-cCCccccchhhccCccCcEEEeeCCCCCCC--CCCCCCCCCc
Q 037494          213 -----------------------LICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITLPAP--PKNYSSSLKN  266 (394)
Q Consensus       213 -----------------------~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~--~p~~l~~l~~  266 (394)
                                             .+..+.+|+.|+++ + ....+|..+..+++|++|+++ +|....  ++..++.+++
T Consensus       242 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls-~~~l~~~~~~~~~~~~~~  319 (592)
T 3ogk_B          242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLL-YALLETEDHCTLIQKCPN  319 (592)
T ss_dssp             CTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGCCEEEET-TCCCCHHHHHHHHTTCTT
T ss_pred             hhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHhhcCCCcEEecC-CCcCCHHHHHHHHHhCcC
Confidence                                   44455556666555 4 455667777788899999999 876321  1122578889


Q ss_pred             CceeCccccC--CCcchhcCCCCCCCeEEEee----------cCCccccchhhhhcCCCCCcEEEecCCCCCCccCC-CC
Q 037494          267 LIFISALHPS--SCTPDILSRLPTVQTLRISG----------DLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVL-SE  333 (394)
Q Consensus       267 L~~L~~~~~~--~~~~~~l~~l~~L~~L~l~~----------~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p-~~  333 (394)
                      |++|.+..+-  .........+++|+.|++++          +.......+......+++|+.|++.+ +++..-.+ .+
T Consensus       320 L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~-~~l~~~~~~~l  398 (592)
T 3ogk_B          320 LEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYV-SDITNESLESI  398 (592)
T ss_dssp             CCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEE-SCCCHHHHHHH
T ss_pred             CCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeec-CCccHHHHHHH
Confidence            9999887433  22333345678999999994          43112223444456689999999954 44433211 22


Q ss_pred             -CCCCCCceEEEEec----ccCCCCCc-----ccccCCCCCCeEEEeccc--ccCceeEEeCCCCCcCCccc
Q 037494          334 -YQFPPSLIQLSLSN----TELMEDPM-----PMLERLPRLQVMKLKRNS--YFGRKLACVGSGGFPELQVL  393 (394)
Q Consensus       334 -~~~l~~L~~L~L~~----~~l~~~~~-----~~l~~l~~L~~L~l~~n~--~~~~~~~~~~~~~fp~L~~L  393 (394)
                       .. +++|+.|++++    +.++..+.     ..+.++++|++|+++.+.  +++..+... ...+|+|+.|
T Consensus       399 ~~~-~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~-~~~~~~L~~L  468 (592)
T 3ogk_B          399 GTY-LKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI-GQYSPNVRWM  468 (592)
T ss_dssp             HHH-CCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHH-HHSCTTCCEE
T ss_pred             Hhh-CCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHH-HHhCccceEe
Confidence             23 78999999984    45543321     225679999999997533  343332222 2347778776

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.55  E-value=4.2e-14  Score=123.20  Aligned_cols=119  Identities=14%  Similarity=0.179  Sum_probs=62.1

Q ss_pred             eEEEcCCCCCCCCcccccCcccccEEecCCCCCccccc-cccCCCCCcEEEcc-cCCcccc-chhhccCccCcEEEeeCC
Q 037494          175 RVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPL-LICTLLNLETLEMP-AGYIDHS-PEGIWMMQKLMHLNFDSI  251 (394)
Q Consensus       175 ~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~-~~~l~~l-p~~i~~l~~L~~L~l~~~  251 (394)
                      +.+++++++++.+|..+.  .+|+.|++++|.++.+|+ .+..+++|++|+++ | .+..+ |..+..+++|++|+++ +
T Consensus        14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls-~   89 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLY-G   89 (220)
T ss_dssp             TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECC-S
T ss_pred             CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECC-C
Confidence            345556666666655443  456666666666665554 45556666666666 5 55544 3455566666666666 6


Q ss_pred             CCCCCCCCC-CCCCCcCceeCccccC--CCcchhcCCCCCCCeEEEeec
Q 037494          252 TLPAPPKNY-SSSLKNLIFISALHPS--SCTPDILSRLPTVQTLRISGD  297 (394)
Q Consensus       252 ~~~~~~p~~-l~~l~~L~~L~~~~~~--~~~~~~l~~l~~L~~L~l~~~  297 (394)
                      |.+..+|+. ++.+++|++|++.++.  ...+..+..+++|+.|++++|
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  138 (220)
T 2v9t_B           90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDN  138 (220)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCC
Confidence            555555543 3444555555444444  112233344444444444444

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.53  E-value=4.6e-14  Score=121.74  Aligned_cols=166  Identities=15%  Similarity=0.133  Sum_probs=134.2

Q ss_pred             cEEecCCCCCccccccccCCCCCcEEEcc-cCCccccchh-hccCccCcEEEeeCCCCCCCCCCC-CCCCCcCceeCccc
Q 037494          198 KYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEG-IWMMQKLMHLNFDSITLPAPPKNY-SSSLKNLIFISALH  274 (394)
Q Consensus       198 ~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~-l~~l~~L~~L~~~~  274 (394)
                      +.++.+++.+..+|..+  ..+|++|+++ + .+..+|.. +..+++|++|+++ +|.+..+|+. ++.+++|++|++.+
T Consensus        10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~Ls~   85 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTGI--PAQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLG-GNKLQSLPNGVFNKLTSLTYLNLST   85 (208)
T ss_dssp             TEEECCSSCCSSCCSCC--CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECC-SSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEecCCCccCCCCCC--CCCCcEEEcCCC-ccCcCChhhhcccccCcEEECC-CCccCccChhhcCCCCCcCEEECCC
Confidence            57788888899998766  4589999999 8 88888864 6799999999999 9998888765 58899999999998


Q ss_pred             cC-CCcc-hhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCccCC-CCCCCCCCceEEEEecccCC
Q 037494          275 PS-SCTP-DILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTELM  351 (394)
Q Consensus       275 ~~-~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l~  351 (394)
                      +. ...+ ..++.+++|+.|++++|.  .....+..+..+++|+.|++++ +.+..+.+ .+.. +++|+.|++++|.+.
T Consensus        86 n~l~~~~~~~~~~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~-l~~L~~L~l~~N~~~  161 (208)
T 2o6s_A           86 NQLQSLPNGVFDKLTQLKELALNTNQ--LQSLPDGVFDKLTQLKDLRLYQ-NQLKSVPDGVFDR-LTSLQYIWLHDNPWD  161 (208)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTT-CTTCCEEECCSCCBC
T ss_pred             CcCCccCHhHhcCccCCCEEEcCCCc--CcccCHhHhccCCcCCEEECCC-CccceeCHHHhcc-CCCccEEEecCCCee
Confidence            88 4333 447889999999999986  4433344578899999999998 67777723 5777 899999999999753


Q ss_pred             CCCcccccCCCCCCeEEEecccccCce
Q 037494          352 EDPMPMLERLPRLQVMKLKRNSYFGRK  378 (394)
Q Consensus       352 ~~~~~~l~~l~~L~~L~l~~n~~~~~~  378 (394)
                             +.+++|+.|+++.|.+.+..
T Consensus       162 -------~~~~~l~~L~~~~n~~~g~i  181 (208)
T 2o6s_A          162 -------CTCPGIRYLSEWINKHSGVV  181 (208)
T ss_dssp             -------CCTTTTHHHHHHHHHCTTTB
T ss_pred             -------cCCCCHHHHHHHHHhCCcee
Confidence                   45678999998888877655

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.53  E-value=1.8e-14  Score=135.25  Aligned_cols=119  Identities=17%  Similarity=0.190  Sum_probs=86.8

Q ss_pred             eEEEcCCCCCCCCcccccCcccccEEecCCCCCccccccc-c-CCCCCcEEEcc-cCCccccch-hhccCccCcEEEeeC
Q 037494          175 RVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLI-C-TLLNLETLEMP-AGYIDHSPE-GIWMMQKLMHLNFDS  250 (394)
Q Consensus       175 ~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~l-~-~l~~L~~L~l~-~~~l~~lp~-~i~~l~~L~~L~l~~  250 (394)
                      ++++++++.++.+|..+.  ..++.|++++|.+..+|... . ++.+|++|+++ | .+..++. .+..+++|++|+++ 
T Consensus        21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls-   96 (361)
T 2xot_A           21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLS-   96 (361)
T ss_dssp             TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECC-
T ss_pred             CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECC-
Confidence            578889988888887665  35888999999998887653 4 78899999999 8 8888774 58888999999999 


Q ss_pred             CCCCCCCCCC-CCCCCcCceeCccccC--CCcchhcCCCCCCCeEEEeec
Q 037494          251 ITLPAPPKNY-SSSLKNLIFISALHPS--SCTPDILSRLPTVQTLRISGD  297 (394)
Q Consensus       251 ~~~~~~~p~~-l~~l~~L~~L~~~~~~--~~~~~~l~~l~~L~~L~l~~~  297 (394)
                      +|.+..+++. ++.+++|+.|++.++.  ...+..+..+++|+.|++++|
T Consensus        97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N  146 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN  146 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC
Confidence            8887666653 5666777777666665  122344555555555555555

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.52  E-value=1.1e-13  Score=121.42  Aligned_cols=79  Identities=19%  Similarity=0.217  Sum_probs=39.2

Q ss_pred             EEEcCCCCCCCCcccccCcccccEEecCCCCCccc-cccccCCCCCcEEEcc-cCCccccchh-hccCccCcEEEeeCCC
Q 037494          176 VLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCL-PLLICTLLNLETLEMP-AGYIDHSPEG-IWMMQKLMHLNFDSIT  252 (394)
Q Consensus       176 ~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~l~-~~~l~~lp~~-i~~l~~L~~L~l~~~~  252 (394)
                      .++.+++.+..+|..+.  ++|++|++++|.+..+ |..+..+++|++|+++ | .+..+|.. +..+++|++|+++ +|
T Consensus        23 ~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls-~N   98 (229)
T 3e6j_A           23 TVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLG-TN   98 (229)
T ss_dssp             EEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECC-SS
T ss_pred             EeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECC-CC
Confidence            34555555555554333  4555555555555544 3334455555555555 4 45555432 3455555555555 55


Q ss_pred             CCCCCC
Q 037494          253 LPAPPK  258 (394)
Q Consensus       253 ~~~~~p  258 (394)
                      .+..+|
T Consensus        99 ~l~~l~  104 (229)
T 3e6j_A           99 QLTVLP  104 (229)
T ss_dssp             CCCCCC
T ss_pred             cCCccC
Confidence            444443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.52  E-value=7.3e-14  Score=121.68  Aligned_cols=96  Identities=13%  Similarity=0.116  Sum_probs=42.9

Q ss_pred             EEEcCCCCCCCCcccccCcccccEEecCCCCCccccc--cccCCCCCcEEEcc-cCCccccch-hhccCccCcEEEeeCC
Q 037494          176 VLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPL--LICTLLNLETLEMP-AGYIDHSPE-GIWMMQKLMHLNFDSI  251 (394)
Q Consensus       176 ~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~--~l~~l~~L~~L~l~-~~~l~~lp~-~i~~l~~L~~L~l~~~  251 (394)
                      +++++++.++.+|..+..  .+++|++++|.++.+++  .++.+++|++|+++ | .+..++. .+..+++|++|+++ +
T Consensus        15 ~l~~s~n~l~~iP~~~~~--~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls-~   90 (220)
T 2v70_A           15 TVDCSNQKLNKIPEHIPQ--YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLT-S   90 (220)
T ss_dssp             EEECCSSCCSSCCSCCCT--TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECC-S
T ss_pred             EeEeCCCCcccCccCCCC--CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECC-C
Confidence            445555555555443322  23455555555544421  14445555555555 4 4444443 34445555555555 4


Q ss_pred             CCCCCCCCC-CCCCCcCceeCcccc
Q 037494          252 TLPAPPKNY-SSSLKNLIFISALHP  275 (394)
Q Consensus       252 ~~~~~~p~~-l~~l~~L~~L~~~~~  275 (394)
                      |.+..+++. ++.+++|++|++.++
T Consensus        91 N~l~~~~~~~~~~l~~L~~L~Ls~N  115 (220)
T 2v70_A           91 NRLENVQHKMFKGLESLKTLMLRSN  115 (220)
T ss_dssp             SCCCCCCGGGGTTCSSCCEEECTTS
T ss_pred             CccCccCHhHhcCCcCCCEEECCCC
Confidence            444333332 333444444443333

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.52  E-value=1.8e-14  Score=135.34  Aligned_cols=166  Identities=17%  Similarity=0.104  Sum_probs=121.9

Q ss_pred             cEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCccc-cc-CcccccEEecCCCCCccccc-cccCCCCCcEE
Q 037494          147 QSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPG-LE-NLFLLKYLQLNIPTLKCLPL-LICTLLNLETL  223 (394)
Q Consensus       147 r~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~~-i~-~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L  223 (394)
                      +++.+.++...     .+|..  -.+.+++|++++|.++.++.. +. .+++|++|++++|.+..+|+ .+.++++|++|
T Consensus        21 ~~l~c~~~~l~-----~iP~~--~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L   93 (361)
T 2xot_A           21 NILSCSKQQLP-----NVPQS--LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYL   93 (361)
T ss_dssp             TEEECCSSCCS-----SCCSS--CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred             CEEEeCCCCcC-----ccCcc--CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEE
Confidence            45666665554     23321  134588999999999877644 44 88999999999999998874 58889999999


Q ss_pred             Ecc-cCCccccch-hhccCccCcEEEeeCCCCCCCC-CCCCCCCCcCceeCccccC-CCcchhc----CCCCCCCeEEEe
Q 037494          224 EMP-AGYIDHSPE-GIWMMQKLMHLNFDSITLPAPP-KNYSSSLKNLIFISALHPS-SCTPDIL----SRLPTVQTLRIS  295 (394)
Q Consensus       224 ~l~-~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~-p~~l~~l~~L~~L~~~~~~-~~~~~~l----~~l~~L~~L~l~  295 (394)
                      +++ | .+..+|. .+..+++|++|+++ +|.+..+ |..++.+++|+.|++.++. ...+..+    ..+++|+.|+++
T Consensus        94 ~Ls~N-~l~~~~~~~~~~l~~L~~L~L~-~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~  171 (361)
T 2xot_A           94 DLSSN-HLHTLDEFLFSDLQALEVLLLY-NNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLS  171 (361)
T ss_dssp             ECCSS-CCCEECTTTTTTCTTCCEEECC-SSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECC
T ss_pred             ECCCC-cCCcCCHHHhCCCcCCCEEECC-CCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECC
Confidence            999 8 8888876 47889999999999 8886666 4568899999999999888 4444443    568889999998


Q ss_pred             ecCCccccchhhhhcCCCC--CcEEEecCC
Q 037494          296 GDLSHYHSGVSKSLCELHK--LECLKLVNG  323 (394)
Q Consensus       296 ~~~~~~~~~~~~~l~~~~~--L~~L~l~~~  323 (394)
                      +|.  ....-+..+..++.  ++.|+++++
T Consensus       172 ~N~--l~~l~~~~~~~l~~~~l~~l~l~~N  199 (361)
T 2xot_A          172 SNK--LKKLPLTDLQKLPAWVKNGLYLHNN  199 (361)
T ss_dssp             SSC--CCCCCHHHHHHSCHHHHTTEECCSS
T ss_pred             CCC--CCccCHHHhhhccHhhcceEEecCC
Confidence            885  33323345666665  367888773

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.52  E-value=2.5e-15  Score=153.49  Aligned_cols=154  Identities=14%  Similarity=0.067  Sum_probs=96.5

Q ss_pred             CCceEEEEEEeCCcchhhcc-CCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCcccccCcccccE
Q 037494          121 LATVKRCFILEDLIEFISLE-QSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKY  199 (394)
Q Consensus       121 ~~~~r~L~l~~~~~~~~~~~-~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~  199 (394)
                      ...++++.+..+.....+.. .....|+.+.+.......-.....++.|..++.|++|+|++|.+..+|..+..+++|++
T Consensus       172 ~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~  251 (727)
T 4b8c_D          172 TPLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTR  251 (727)
T ss_dssp             --------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSC
T ss_pred             CCccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCE
Confidence            34567777754444443322 23333444333332211000012255558899999999999999999988889999999


Q ss_pred             EecCCCCCccccccccCCCCCcEEEcc-cCCccccchhhccCccCcEEEeeCCCCCCCCCCCCCCCCcCceeCccccC
Q 037494          200 LQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITLPAPPKNYSSSLKNLIFISALHPS  276 (394)
Q Consensus       200 L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~  276 (394)
                      |+|++|.+..+|..++++++|++|+|+ | .+..+|..++.+++|++|+++ +|.+..+|.+++.+++|++|++.+|.
T Consensus       252 L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~-~N~l~~lp~~~~~l~~L~~L~L~~N~  327 (727)
T 4b8c_D          252 LYLNGNSLTELPAEIKNLSNLRVLDLSHN-RLTSLPAELGSCFQLKYFYFF-DNMVTTLPWEFGNLCNLQFLGVEGNP  327 (727)
T ss_dssp             CBCTTSCCSCCCGGGGGGTTCCEEECTTS-CCSSCCSSGGGGTTCSEEECC-SSCCCCCCSSTTSCTTCCCEECTTSC
T ss_pred             EEeeCCcCcccChhhhCCCCCCEEeCcCC-cCCccChhhcCCCCCCEEECC-CCCCCccChhhhcCCCccEEeCCCCc
Confidence            999999999999889999999999999 8 888999999999999999999 99888899889999999999998887

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.50  E-value=1.2e-13  Score=120.31  Aligned_cols=147  Identities=14%  Similarity=0.164  Sum_probs=113.9

Q ss_pred             cEEecCCCCCccccccccCCCCCcEEEcc-cCCccccch-hhccCccCcEEEeeCCCCCCCC-CCCCCCCCcCceeCccc
Q 037494          198 KYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPE-GIWMMQKLMHLNFDSITLPAPP-KNYSSSLKNLIFISALH  274 (394)
Q Consensus       198 ~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~-p~~l~~l~~L~~L~~~~  274 (394)
                      +.++++++.++.+|..+.  .+|+.|+++ | .+..+|. .+..+++|+.|+++ +|.+..+ |..++.+++|++|++.+
T Consensus        14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls-~N~i~~~~~~~~~~l~~L~~L~Ls~   89 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLS-NNQISELAPDAFQGLRSLNSLVLYG   89 (220)
T ss_dssp             TEEECTTSCCSSCCSSCC--TTCCEEECCSS-CCCEECTTSSTTCTTCCEEECC-SSCCCEECTTTTTTCSSCCEEECCS
T ss_pred             CEEEcCCCCcCcCCCccC--cCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECC-CCcCCCcCHHHhhCCcCCCEEECCC
Confidence            678899999999998775  689999999 8 8888876 68889999999999 9886665 56788888999998888


Q ss_pred             cC-CCcch-hcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCccCC-CCCCCCCCceEEEEecccCC
Q 037494          275 PS-SCTPD-ILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTELM  351 (394)
Q Consensus       275 ~~-~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l~  351 (394)
                      +. ...+. .+..+++|+.|++++|.  .....+..+..+++|+.|+|++ +.+..+.+ .+.. +++|+.|+|++|++.
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~-l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B           90 NKITELPKSLFEGLFSLQLLLLNANK--INCLRVDAFQDLHNLNLLSLYD-NKLQTIAKGTFSP-LRAIQTMHLAQNPFI  165 (220)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTT-CTTCCEEECCSSCEE
T ss_pred             CcCCccCHhHccCCCCCCEEECCCCC--CCEeCHHHcCCCCCCCEEECCC-CcCCEECHHHHhC-CCCCCEEEeCCCCcC
Confidence            87 44443 35778888888888886  4444456677778888888877 66776623 5666 778888888877765


Q ss_pred             C
Q 037494          352 E  352 (394)
Q Consensus       352 ~  352 (394)
                      +
T Consensus       166 c  166 (220)
T 2v9t_B          166 C  166 (220)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.50  E-value=1.2e-13  Score=120.31  Aligned_cols=149  Identities=13%  Similarity=0.062  Sum_probs=115.7

Q ss_pred             ccEEecCCCCCccccccccCCCCCcEEEcc-cCCccccch--hhccCccCcEEEeeCCCCCCCCCC-CCCCCCcCceeCc
Q 037494          197 LKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPE--GIWMMQKLMHLNFDSITLPAPPKN-YSSSLKNLIFISA  272 (394)
Q Consensus       197 L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L~~  272 (394)
                      -+.++++++.++.+|..+.  ..+++|+++ | .+..++.  .+..+++|++|+++ +|.+..+++ .++.+++|++|++
T Consensus        13 ~~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~-~N~i~~i~~~~~~~l~~L~~L~L   88 (220)
T 2v70_A           13 GTTVDCSNQKLNKIPEHIP--QYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFS-NNKITDIEEGAFEGASGVNEILL   88 (220)
T ss_dssp             TTEEECCSSCCSSCCSCCC--TTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECC-SSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCEeEeCCCCcccCccCCC--CCCCEEEcCCC-cCCccCchhhhccCCCCCEEECC-CCcCCEECHHHhCCCCCCCEEEC
Confidence            3689999999999998764  467899999 8 8888843  37899999999999 998777765 5888889999988


Q ss_pred             cccC--CCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCccCC-CCCCCCCCceEEEEeccc
Q 037494          273 LHPS--SCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTE  349 (394)
Q Consensus       273 ~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~  349 (394)
                      .++.  ...+..++.+++|+.|++++|.  .....+..+..+++|+.|+|++ +++..+.| .+.. +++|+.|+|++|.
T Consensus        89 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~-l~~L~~L~L~~N~  164 (220)
T 2v70_A           89 TSNRLENVQHKMFKGLESLKTLMLRSNR--ITCVGNDSFIGLSSVRLLSLYD-NQITTVAPGAFDT-LHSLSTLNLLANP  164 (220)
T ss_dssp             CSSCCCCCCGGGGTTCSSCCEEECTTSC--CCCBCTTSSTTCTTCSEEECTT-SCCCCBCTTTTTT-CTTCCEEECCSCC
T ss_pred             CCCccCccCHhHhcCCcCCCEEECCCCc--CCeECHhHcCCCccCCEEECCC-CcCCEECHHHhcC-CCCCCEEEecCcC
Confidence            8887  3334457888888888888886  4444566777788888888877 66776644 6777 7888888888887


Q ss_pred             CCCC
Q 037494          350 LMED  353 (394)
Q Consensus       350 l~~~  353 (394)
                      +.+.
T Consensus       165 l~c~  168 (220)
T 2v70_A          165 FNCN  168 (220)
T ss_dssp             EECS
T ss_pred             CcCC
Confidence            6543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.50  E-value=2.3e-13  Score=119.22  Aligned_cols=149  Identities=15%  Similarity=0.087  Sum_probs=124.2

Q ss_pred             ccEEecCCCCCccccccccCCCCCcEEEcc-cCCcccc-chhhccCccCcEEEeeCCCCCCCCCCC-CCCCCcCceeCcc
Q 037494          197 LKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHS-PEGIWMMQKLMHLNFDSITLPAPPKNY-SSSLKNLIFISAL  273 (394)
Q Consensus       197 L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~~-l~~l~~L~~L~~~  273 (394)
                      -+.++.+++.+..+|..+.  .+|++|+++ | .+..+ |..+..+++|++|+++ +|.+..+|.. ++.+++|+.|++.
T Consensus        21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~-~N~l~~i~~~~~~~l~~L~~L~Ls   96 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDN-QITKLEPGVFDSLINLKELYLG-SNQLGALPVGVFDSLTQLTVLDLG   96 (229)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEeEccCCCcCccCCCCC--CCCCEEEcCCC-ccCccCHHHhhCccCCcEEECC-CCCCCCcChhhcccCCCcCEEECC
Confidence            4678899999999998765  899999999 8 78777 5578899999999999 9998888865 6899999999999


Q ss_pred             ccC-CCcc-hhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCccCC-CCCCCCCCceEEEEecccC
Q 037494          274 HPS-SCTP-DILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTEL  350 (394)
Q Consensus       274 ~~~-~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l  350 (394)
                      ++. ...+ ..+..+++|+.|++++|.   ...+|..+..+++|+.|++++ +++..+.+ .+.. +++|+.|++++|.+
T Consensus        97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~---l~~lp~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~-l~~L~~L~l~~N~~  171 (229)
T 3e6j_A           97 TNQLTVLPSAVFDRLVHLKELFMCCNK---LTELPRGIERLTHLTHLALDQ-NQLKSIPHGAFDR-LSSLTHAYLFGNPW  171 (229)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSC---CCSCCTTGGGCTTCSEEECCS-SCCCCCCTTTTTT-CTTCCEEECTTSCB
T ss_pred             CCcCCccChhHhCcchhhCeEeccCCc---ccccCcccccCCCCCEEECCC-CcCCccCHHHHhC-CCCCCEEEeeCCCc
Confidence            988 4333 446889999999999985   447788888999999999998 67888823 6777 89999999999988


Q ss_pred             CCCC
Q 037494          351 MEDP  354 (394)
Q Consensus       351 ~~~~  354 (394)
                      .+..
T Consensus       172 ~c~c  175 (229)
T 3e6j_A          172 DCEC  175 (229)
T ss_dssp             CTTB
T ss_pred             cCCc
Confidence            6653

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.50  E-value=4.4e-14  Score=117.54  Aligned_cols=127  Identities=17%  Similarity=0.068  Sum_probs=89.9

Q ss_pred             ccCCceeEEEcCCCCCC--CCcccccCcccccEEecCCCCCccccccccCCCCCcEEEcc-cCCccc-cchhhccCccCc
Q 037494          169 ENFKYLRVLNWGSAVLD--QFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDH-SPEGIWMMQKLM  244 (394)
Q Consensus       169 ~~l~~L~~L~l~~~~~~--~lp~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~-lp~~i~~l~~L~  244 (394)
                      ...++|++|++++|.+.  .+|..+..+++|++|++++|.+..+ ..++.+++|++|+++ | .+.. +|..+..+++|+
T Consensus        21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~   98 (168)
T 2ell_A           21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSEN-RIFGGLDMLAEKLPNLT   98 (168)
T ss_dssp             SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESC-CCCSCCCHHHHHCTTCC
T ss_pred             CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCC-cCchHHHHHHhhCCCCC
Confidence            34577888888888877  7777778888888888888887777 677778888888888 7 6666 666666688888


Q ss_pred             EEEeeCCCCCCCCC--CCCCCCCcCceeCccccC-CCcch----hcCCCCCCCeEEEeecC
Q 037494          245 HLNFDSITLPAPPK--NYSSSLKNLIFISALHPS-SCTPD----ILSRLPTVQTLRISGDL  298 (394)
Q Consensus       245 ~L~l~~~~~~~~~p--~~l~~l~~L~~L~~~~~~-~~~~~----~l~~l~~L~~L~l~~~~  298 (394)
                      +|+++ +|.+..+|  ..++.+++|+.|++.++. ...+.    .+..+++|+.|++++|.
T Consensus        99 ~L~Ls-~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~  158 (168)
T 2ell_A           99 HLNLS-GNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE  158 (168)
T ss_dssp             EEECB-SSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred             EEecc-CCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence            88888 77766655  456666667776666665 22222    56666666666666664

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.48  E-value=8.7e-15  Score=149.48  Aligned_cols=190  Identities=13%  Similarity=0.013  Sum_probs=112.6

Q ss_pred             CCCccEEEEecCCCccchhcchhHHhccCCceeEE-----EcCCCCCCCCcccccCcccccEEecCCCCCccccccccCC
Q 037494          143 DMYLQSFLNHSSESDHLALIDCENFCENFKYLRVL-----NWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTL  217 (394)
Q Consensus       143 ~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L-----~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~l~~l  217 (394)
                      .+.++.|.+.++....    .-..+ -....|+.+     +++.+.+...|..+..+.+|+.|+|++|.+..+|..++++
T Consensus       172 ~~~~~~l~L~~n~~~~----~~~~~-l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l  246 (727)
T 4b8c_D          172 TPLTPKIELFANGKDE----ANQAL-LQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKY  246 (727)
T ss_dssp             -------------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGC
T ss_pred             CCccceEEeeCCCCCc----chhhH-hhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCC
Confidence            3457777776665542    00111 222223332     2333444445788899999999999999999999999999


Q ss_pred             CCCcEEEcc-cCCccccchhhccCccCcEEEeeCCCCCCCCCCCCCCCCcCceeCccccC-CCcchhcCCCCCCCeEEEe
Q 037494          218 LNLETLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITLPAPPKNYSSSLKNLIFISALHPS-SCTPDILSRLPTVQTLRIS  295 (394)
Q Consensus       218 ~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~l~  295 (394)
                      .+|++|+|+ | .+..+|..++.+++|++|+++ +|.+..+|..++.+++|++|++.+|. ..++.+++.+++|+.|+++
T Consensus       247 ~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls-~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~  324 (727)
T 4b8c_D          247 DFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLS-HNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVE  324 (727)
T ss_dssp             CSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECT-TSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECT
T ss_pred             CCCCEEEeeCC-cCcccChhhhCCCCCCEEeCc-CCcCCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCC
Confidence            999999999 8 888999999999999999999 99988999999999999999999998 7778889999999999999


Q ss_pred             ecCCccccchhhhhcCCCC-CcEEEecCCCCCCccCCCCCCCCCCceEEEEecc
Q 037494          296 GDLSHYHSGVSKSLCELHK-LECLKLVNGSKLSRMVLSEYQFPPSLIQLSLSNT  348 (394)
Q Consensus       296 ~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~L~~L~p~~~~~l~~L~~L~L~~~  348 (394)
                      +|.  ..+..|..+..... +..+++.+ +.+...     . +..|+.|+++.|
T Consensus       325 ~N~--l~~~~p~~~~~~~~~~~~l~l~~-N~l~~~-----~-p~~l~~l~l~~n  369 (727)
T 4b8c_D          325 GNP--LEKQFLKILTEKSVTGLIFYLRD-NRPEIP-----L-PHERRFIEINTD  369 (727)
T ss_dssp             TSC--CCSHHHHHHHHHHHHHHHHHHHH-CCCCCC-----C-CCC---------
T ss_pred             CCc--cCCCChHHHhhcchhhhHHhhcc-CcccCc-----C-ccccceeEeecc
Confidence            997  66666666544321 11244544 222211     1 556777777776

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.46  E-value=9.8e-14  Score=115.44  Aligned_cols=130  Identities=18%  Similarity=0.158  Sum_probs=106.1

Q ss_pred             CCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCcccccCcccccEEecCCCCCcc-ccccccCCCC
Q 037494          141 QSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKC-LPLLICTLLN  219 (394)
Q Consensus       141 ~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~-lp~~l~~l~~  219 (394)
                      ...++++.|.+.++...   ...++..+..+++|++|++++|.++.+ ..++.+++|++|++++|.+.. +|..++.+++
T Consensus        21 ~~~~~L~~L~l~~n~l~---~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~   96 (168)
T 2ell_A           21 RTPAAVRELVLDNCKSN---DGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPN   96 (168)
T ss_dssp             SCTTSCSEEECCSCBCB---TTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTT
T ss_pred             CCcccCCEEECCCCCCC---hhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCC
Confidence            34577888888888764   123454458889999999999998877 778889999999999998887 6666667999


Q ss_pred             CcEEEcc-cCCccccc--hhhccCccCcEEEeeCCCCCCCCCC----CCCCCCcCceeCccccC
Q 037494          220 LETLEMP-AGYIDHSP--EGIWMMQKLMHLNFDSITLPAPPKN----YSSSLKNLIFISALHPS  276 (394)
Q Consensus       220 L~~L~l~-~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~~p~----~l~~l~~L~~L~~~~~~  276 (394)
                      |++|+++ | .+..+|  ..+..+++|++|+++ +|.+..+|.    .++.+++|+.|++..+.
T Consensus        97 L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~-~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~  158 (168)
T 2ell_A           97 LTHLNLSGN-KLKDISTLEPLKKLECLKSLDLF-NCEVTNLNDYRESVFKLLPQLTYLDGYDRE  158 (168)
T ss_dssp             CCEEECBSS-SCCSSGGGGGGSSCSCCCEEECC-SSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred             CCEEeccCC-ccCcchhHHHHhcCCCCCEEEee-CCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence            9999999 8 888876  678889999999999 888777777    68889999999988876

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.45  E-value=5.1e-16  Score=155.40  Aligned_cols=244  Identities=13%  Similarity=0.084  Sum_probs=158.0

Q ss_pred             CCceEEEEEEeCCcchhhc-c--CCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCC-----Cccccc
Q 037494          121 LATVKRCFILEDLIEFISL-E--QSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQ-----FPPGLE  192 (394)
Q Consensus       121 ~~~~r~L~l~~~~~~~~~~-~--~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~-----lp~~i~  192 (394)
                      ...+++|.+..+....... .  ..+++|++|.+.++....  ...++.++..+++|++|++++|.+..     ++....
T Consensus       104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~--~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~  181 (594)
T 2p1m_B          104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFS--TDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD  181 (594)
T ss_dssp             CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEE--HHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred             CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCC--HHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence            4467888888554433211 1  257899999999884321  22356666789999999999998653     333334


Q ss_pred             CcccccEEecCCCC--Cc--cccccccCCCCCcEEEcc-cCCccccchhhccCccCcEEEeeCCCCC-------------
Q 037494          193 NLFLLKYLQLNIPT--LK--CLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITLP-------------  254 (394)
Q Consensus       193 ~l~~L~~L~l~~~~--l~--~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~~-------------  254 (394)
                      .+++|+.|++++|.  +.  .++.-+.++++|++|+++ |..+..+|..+..+++|++|++. .+..             
T Consensus       182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~-~~~~~~~~~~~~~l~~~  260 (594)
T 2p1m_B          182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTG-GYTAEVRPDVYSGLSVA  260 (594)
T ss_dssp             TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECS-BCCCCCCHHHHHHHHHH
T ss_pred             cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccc-cccCccchhhHHHHHHH
Confidence            67799999999886  22  233333557899999999 76677778788888889988865 4421             


Q ss_pred             ------------------CCCCCCCCCCCcCceeCccccC---CCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCC
Q 037494          255 ------------------APPKNYSSSLKNLIFISALHPS---SCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELH  313 (394)
Q Consensus       255 ------------------~~~p~~l~~l~~L~~L~~~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~  313 (394)
                                        ..++..+..+++|++|++..|.   ......+..+++|+.|++.++-  ....++.....++
T Consensus       261 l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~--~~~~l~~l~~~~~  338 (594)
T 2p1m_B          261 LSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYI--EDAGLEVLASTCK  338 (594)
T ss_dssp             HHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGG--HHHHHHHHHHHCT
T ss_pred             HhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCcc--CHHHHHHHHHhCC
Confidence                              0111112245778888887776   1122335678888888888773  3333444444578


Q ss_pred             CCcEEEecC--------CCCCCccC-C-CCCCCCCCceEEEEecccCCCCCccccc-CCCCCCeEEEe
Q 037494          314 KLECLKLVN--------GSKLSRMV-L-SEYQFPPSLIQLSLSNTELMEDPMPMLE-RLPRLQVMKLK  370 (394)
Q Consensus       314 ~L~~L~l~~--------~~~L~~L~-p-~~~~~l~~L~~L~L~~~~l~~~~~~~l~-~l~~L~~L~l~  370 (394)
                      +|+.|++.+        +..+..-. . .... +++|+.|.+..+.++...+..+. .+++|+.|+++
T Consensus       339 ~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~-~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~  405 (594)
T 2p1m_B          339 DLRELRVFPSEPFVMEPNVALTEQGLVSVSMG-CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLC  405 (594)
T ss_dssp             TCCEEEEECSCTTCSSCSSCCCHHHHHHHHHH-CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred             CCCEEEEecCcccccccCCCCCHHHHHHHHHh-chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEee
Confidence            888888843        12222110 1 1123 68899998888887655555555 58999999997

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.44  E-value=7e-14  Score=113.90  Aligned_cols=104  Identities=14%  Similarity=0.055  Sum_probs=70.9

Q ss_pred             ccCCceeEEEcCCCCCC--CCcccccCcccccEEecCCCCCccccccccCCCCCcEEEcc-cCCccc-cchhhccCccCc
Q 037494          169 ENFKYLRVLNWGSAVLD--QFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDH-SPEGIWMMQKLM  244 (394)
Q Consensus       169 ~~l~~L~~L~l~~~~~~--~lp~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~-lp~~i~~l~~L~  244 (394)
                      ...++|+.|++++|.+.  .+|..++.+++|++|++++|.+..+ ..++.+++|++|+++ | .+.. +|..++.+++|+
T Consensus        14 ~~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~   91 (149)
T 2je0_A           14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDN-RVSGGLEVLAEKCPNLT   91 (149)
T ss_dssp             CCGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSS-CCCSCTHHHHHHCTTCC
T ss_pred             CCCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCC-cccchHHHHhhhCCCCC
Confidence            34567788888888877  6777777788888888888877776 567778888888888 7 6666 666666678888


Q ss_pred             EEEeeCCCCCCCCC--CCCCCCCcCceeCcccc
Q 037494          245 HLNFDSITLPAPPK--NYSSSLKNLIFISALHP  275 (394)
Q Consensus       245 ~L~l~~~~~~~~~p--~~l~~l~~L~~L~~~~~  275 (394)
                      +|+++ +|.+..+|  ..++.+++|++|++.+|
T Consensus        92 ~L~ls-~N~i~~~~~~~~~~~l~~L~~L~l~~N  123 (149)
T 2je0_A           92 HLNLS-GNKIKDLSTIEPLKKLENLKSLDLFNC  123 (149)
T ss_dssp             EEECT-TSCCCSHHHHGGGGGCTTCCEEECTTC
T ss_pred             EEECC-CCcCCChHHHHHHhhCCCCCEEeCcCC
Confidence            88887 76655443  33444444444444433

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.42  E-value=1.7e-13  Score=115.03  Aligned_cols=126  Identities=17%  Similarity=0.151  Sum_probs=81.6

Q ss_pred             ccCCceeEEEcCCCCCCCCcccccCcc-cccEEecCCCCCccccccccCCCCCcEEEcc-cCCccccchhh-ccCccCcE
Q 037494          169 ENFKYLRVLNWGSAVLDQFPPGLENLF-LLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGI-WMMQKLMH  245 (394)
Q Consensus       169 ~~l~~L~~L~l~~~~~~~lp~~i~~l~-~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i-~~l~~L~~  245 (394)
                      ..+.+|++|++++|.++.+|. +..+. +|++|++++|.+..+ +.++.+++|++|+++ | .+..+|+.+ +.+++|++
T Consensus        16 ~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~   92 (176)
T 1a9n_A           16 TNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTE   92 (176)
T ss_dssp             ECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCCE
T ss_pred             CCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCC-cccccCcchhhcCCCCCE
Confidence            556677777777777776644 44444 777777777777766 466777777777777 6 666666544 66777777


Q ss_pred             EEeeCCCCCCCCCC--CCCCCCcCceeCccccC-CCcch----hcCCCCCCCeEEEeecC
Q 037494          246 LNFDSITLPAPPKN--YSSSLKNLIFISALHPS-SCTPD----ILSRLPTVQTLRISGDL  298 (394)
Q Consensus       246 L~l~~~~~~~~~p~--~l~~l~~L~~L~~~~~~-~~~~~----~l~~l~~L~~L~l~~~~  298 (394)
                      |+++ +|.+..+|.  .++.+++|+.|++.++. ...+.    .++.+++|+.|+++.+.
T Consensus        93 L~L~-~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A           93 LILT-NNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             EECC-SCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             EECC-CCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence            7777 776666665  55666666666666655 33333    25566666666666664

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.41  E-value=1.9e-13  Score=114.68  Aligned_cols=129  Identities=12%  Similarity=0.066  Sum_probs=111.7

Q ss_pred             cCCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCcccccCcccccEEecCCCCCccccccc-cCCC
Q 037494          140 EQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLI-CTLL  218 (394)
Q Consensus       140 ~~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~l-~~l~  218 (394)
                      ...+.+++.|.+.++...     .++.+....++|++|++++|.++.+ +.++.+++|++|++++|.+..+|+.+ +.++
T Consensus        15 ~~~~~~L~~L~l~~n~l~-----~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~   88 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIP-----VIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALP   88 (176)
T ss_dssp             EECTTSCEEEECTTSCCC-----SCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred             cCCcCCceEEEeeCCCCc-----hhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCC
Confidence            356788999999998876     3455533344999999999999987 67999999999999999999998776 8899


Q ss_pred             CCcEEEcc-cCCccccch--hhccCccCcEEEeeCCCCCCCCCCC----CCCCCcCceeCccccC
Q 037494          219 NLETLEMP-AGYIDHSPE--GIWMMQKLMHLNFDSITLPAPPKNY----SSSLKNLIFISALHPS  276 (394)
Q Consensus       219 ~L~~L~l~-~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~p~~----l~~l~~L~~L~~~~~~  276 (394)
                      +|++|+++ | .+..+|.  .+..+++|++|+++ +|.+..+|..    ++.+++|+.|++..+.
T Consensus        89 ~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~-~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A           89 DLTELILTNN-SLVELGDLDPLASLKSLTYLCIL-RNPVTNKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             TCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECC-SSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             CCCEEECCCC-cCCcchhhHhhhcCCCCCEEEec-CCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence            99999999 8 8899987  78999999999999 9998888875    8899999999998887

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.40  E-value=1.1e-13  Score=112.74  Aligned_cols=126  Identities=19%  Similarity=0.178  Sum_probs=103.1

Q ss_pred             CCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCcccccCcccccEEecCCCCCcc-ccccccCCCCC
Q 037494          142 SDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKC-LPLLICTLLNL  220 (394)
Q Consensus       142 ~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~-lp~~l~~l~~L  220 (394)
                      ..++++.|.+.++...   ...++..+..+++|++|++++|.++.+ ..++.+++|++|++++|.+.. +|..++.+++|
T Consensus        15 ~~~~l~~L~l~~n~l~---~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L   90 (149)
T 2je0_A           15 TPSDVKELVLDNSRSN---EGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNL   90 (149)
T ss_dssp             CGGGCSEEECTTCBCB---TTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTC
T ss_pred             CCccCeEEEccCCcCC---hhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCC
Confidence            4467888888888764   123455558899999999999998877 778899999999999999887 77777779999


Q ss_pred             cEEEcc-cCCccccc--hhhccCccCcEEEeeCCCCCCCCCC----CCCCCCcCceeCcc
Q 037494          221 ETLEMP-AGYIDHSP--EGIWMMQKLMHLNFDSITLPAPPKN----YSSSLKNLIFISAL  273 (394)
Q Consensus       221 ~~L~l~-~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~~p~----~l~~l~~L~~L~~~  273 (394)
                      ++|+++ | .+..+|  ..++.+++|++|+++ +|.+...|+    .++.+++|+.|++.
T Consensus        91 ~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~-~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           91 THLNLSGN-KIKDLSTIEPLKKLENLKSLDLF-NCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CEEECTTS-CCCSHHHHGGGGGCTTCCEEECT-TCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CEEECCCC-cCCChHHHHHHhhCCCCCEEeCc-CCcccchHHHHHHHHHHCCCcccccCC
Confidence            999999 8 788775  678899999999999 988777776    47778888888765

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.37  E-value=8.2e-15  Score=146.63  Aligned_cols=268  Identities=15%  Similarity=0.112  Sum_probs=156.6

Q ss_pred             CCceEEEEEEeCC-cch--hhcc-CCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCC--CC--CCccccc
Q 037494          121 LATVKRCFILEDL-IEF--ISLE-QSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAV--LD--QFPPGLE  192 (394)
Q Consensus       121 ~~~~r~L~l~~~~-~~~--~~~~-~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~--~~--~lp~~i~  192 (394)
                      ..++++|.+..+. ...  ++.. ..+++|+.|.+.++.........++.+...+++|++|+++++.  +.  .++..+.
T Consensus       129 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~  208 (594)
T 2p1m_B          129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVT  208 (594)
T ss_dssp             CTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHH
T ss_pred             CCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHH
Confidence            3577888887331 112  2222 3678888888887764321111234444567788888888776  22  1222234


Q ss_pred             CcccccEEecCCC-CCccccccccCCCCCcEEEcc-cC------------------------------CccccchhhccC
Q 037494          193 NLFLLKYLQLNIP-TLKCLPLLICTLLNLETLEMP-AG------------------------------YIDHSPEGIWMM  240 (394)
Q Consensus       193 ~l~~L~~L~l~~~-~l~~lp~~l~~l~~L~~L~l~-~~------------------------------~l~~lp~~i~~l  240 (394)
                      .+++|++|++++| .+..+|..+.++++|+.|++. +.                              ....+|..+..+
T Consensus       209 ~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~  288 (594)
T 2p1m_B          209 RCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVC  288 (594)
T ss_dssp             HCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHH
T ss_pred             hCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhh
Confidence            4678888888877 455566666666667777643 21                              123344445578


Q ss_pred             ccCcEEEeeCCCCCCC--CCCCCCCCCcCceeCccccC--CCcchhcCCCCCCCeEEEeecC-------Cccccc-hhhh
Q 037494          241 QKLMHLNFDSITLPAP--PKNYSSSLKNLIFISALHPS--SCTPDILSRLPTVQTLRISGDL-------SHYHSG-VSKS  308 (394)
Q Consensus       241 ~~L~~L~l~~~~~~~~--~p~~l~~l~~L~~L~~~~~~--~~~~~~l~~l~~L~~L~l~~~~-------~~~~~~-~~~~  308 (394)
                      ++|++|+++ +|....  ++..++.+++|++|.+.++-  .........+++|+.|++.++.       ...... +...
T Consensus       289 ~~L~~L~L~-~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l  367 (594)
T 2p1m_B          289 SRLTTLNLS-YATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSV  367 (594)
T ss_dssp             TTCCEEECT-TCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHH
T ss_pred             CCCCEEEcc-CCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHH
Confidence            999999999 877321  11225688999999998774  1122223357899999996531       012222 2222


Q ss_pred             hcCCCCCcEEEecCCCCCCccCC-CC-CCCCCCceEEEEe--c----ccCCCCCc-----ccccCCCCCCeEEEeccccc
Q 037494          309 LCELHKLECLKLVNGSKLSRMVL-SE-YQFPPSLIQLSLS--N----TELMEDPM-----PMLERLPRLQVMKLKRNSYF  375 (394)
Q Consensus       309 l~~~~~L~~L~l~~~~~L~~L~p-~~-~~~l~~L~~L~L~--~----~~l~~~~~-----~~l~~l~~L~~L~l~~n~~~  375 (394)
                      ...+++|+.|.+.+ +++..-.+ .+ .. +++|+.|+++  +    +.++..+.     ..+..+++|+.|++++ .++
T Consensus       368 ~~~~~~L~~L~~~~-~~l~~~~~~~l~~~-~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~  444 (594)
T 2p1m_B          368 SMGCPKLESVLYFC-RQMTNAALITIARN-RPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLT  444 (594)
T ss_dssp             HHHCTTCCEEEEEE-SCCCHHHHHHHHHH-CTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCC
T ss_pred             HHhchhHHHHHHhc-CCcCHHHHHHHHhh-CCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-ccc
Confidence            34588999997765 44443211 22 24 7899999999  3    34432221     1256789999999965 444


Q ss_pred             CceeEEeCCCCCcCCccc
Q 037494          376 GRKLACVGSGGFPELQVL  393 (394)
Q Consensus       376 ~~~~~~~~~~~fp~L~~L  393 (394)
                      +..+... ...+++|+.|
T Consensus       445 ~~~~~~l-~~~~~~L~~L  461 (594)
T 2p1m_B          445 DKVFEYI-GTYAKKMEML  461 (594)
T ss_dssp             HHHHHHH-HHHCTTCCEE
T ss_pred             HHHHHHH-HHhchhccEe
Confidence            3322211 1126667665

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.36  E-value=1.8e-12  Score=110.34  Aligned_cols=120  Identities=15%  Similarity=0.141  Sum_probs=86.2

Q ss_pred             eEEEcCCCCCCCCcccccCcccccEEecCCCCCcccccc--ccCCCCCcEEEcc-cCCcccc-chhhccCccCcEEEeeC
Q 037494          175 RVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLL--ICTLLNLETLEMP-AGYIDHS-PEGIWMMQKLMHLNFDS  250 (394)
Q Consensus       175 ~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~--l~~l~~L~~L~l~-~~~l~~l-p~~i~~l~~L~~L~l~~  250 (394)
                      ++++++++.+..+|..+..  +|++|++++|.+..+|+.  ++.+++|++|+++ | .+..+ |..+..+++|++|+++ 
T Consensus        11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls-   86 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLG-   86 (192)
T ss_dssp             TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECC-
T ss_pred             CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECC-
Confidence            5677888887777776654  778888888887777653  6778888888888 7 66666 4567778888888888 


Q ss_pred             CCCCCCCCCC-CCCCCcCceeCccccC--CCcchhcCCCCCCCeEEEeecC
Q 037494          251 ITLPAPPKNY-SSSLKNLIFISALHPS--SCTPDILSRLPTVQTLRISGDL  298 (394)
Q Consensus       251 ~~~~~~~p~~-l~~l~~L~~L~~~~~~--~~~~~~l~~l~~L~~L~l~~~~  298 (394)
                      +|.+..+++. ++.+++|++|++.++.  ...+..++.+++|+.|++++|.
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  137 (192)
T 1w8a_A           87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred             CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence            7776655543 6677777777777766  3334566777777777777775

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.35  E-value=5.5e-12  Score=107.37  Aligned_cols=120  Identities=18%  Similarity=0.202  Sum_probs=78.8

Q ss_pred             eEEEcCCCCCCCCcccccCcccccEEecCCCCCccccccccCCCCCcEEEcc-cCCccccch-hhccCccCcEEEeeCCC
Q 037494          175 RVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPE-GIWMMQKLMHLNFDSIT  252 (394)
Q Consensus       175 ~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~-~i~~l~~L~~L~l~~~~  252 (394)
                      ++++++++.++.+|..+.  .+|++|++++|.+..+|..+..+++|++|+++ | .+..++. .+..+++|++|+++ +|
T Consensus        13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls-~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILS-YN   88 (193)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECC-SS
T ss_pred             CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECC-CC
Confidence            456677777776665543  46777777777777777667777777777777 6 6666654 46677777777777 77


Q ss_pred             CCCCCCC-CCCCCCcCceeCccccC-CCcc-hhcCCCCCCCeEEEeecC
Q 037494          253 LPAPPKN-YSSSLKNLIFISALHPS-SCTP-DILSRLPTVQTLRISGDL  298 (394)
Q Consensus       253 ~~~~~p~-~l~~l~~L~~L~~~~~~-~~~~-~~l~~l~~L~~L~l~~~~  298 (394)
                      .+..+++ .++.+++|+.|++.++. ...+ ..+..+++|+.|++.+|+
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  137 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP  137 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence            6555554 46667777777776666 3333 235666777777777665

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.34  E-value=1.7e-12  Score=128.63  Aligned_cols=150  Identities=15%  Similarity=0.129  Sum_probs=115.2

Q ss_pred             hHHhccCCceeEEE-cCCCCCCCCcc------cccC--cccccEEecCCCCCccccccccCCCCCcEEEcc-cCCccccc
Q 037494          165 ENFCENFKYLRVLN-WGSAVLDQFPP------GLEN--LFLLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSP  234 (394)
Q Consensus       165 ~~~~~~l~~L~~L~-l~~~~~~~lp~------~i~~--l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp  234 (394)
                      +..+..+++|+.|+ ++.+.+..++.      .+..  ...|++|++++|.++.+|. ++.+++|++|+++ | .+..+|
T Consensus       402 ~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N-~l~~lp  479 (567)
T 1dce_A          402 KETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHN-RLRALP  479 (567)
T ss_dssp             HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSS-CCCCCC
T ss_pred             HHHHHHHHhcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcc-cccccc
Confidence            45557888888888 55544332221      1111  1258899999999999986 9999999999999 8 888999


Q ss_pred             hhhccCccCcEEEeeCCCCCCCCCCCCCCCCcCceeCccccC-CCc--chhcCCCCCCCeEEEeecCCccccc---hhhh
Q 037494          235 EGIWMMQKLMHLNFDSITLPAPPKNYSSSLKNLIFISALHPS-SCT--PDILSRLPTVQTLRISGDLSHYHSG---VSKS  308 (394)
Q Consensus       235 ~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~-~~~--~~~l~~l~~L~~L~l~~~~~~~~~~---~~~~  308 (394)
                      ..++.+++|+.|+++ +|.+..+| +++.+++|++|++.+|. ...  |..++.+++|+.|++++|.  ....   ....
T Consensus       480 ~~~~~l~~L~~L~Ls-~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~--l~~~~~~~~~l  555 (567)
T 1dce_A          480 PALAALRCLEVLQAS-DNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS--LCQEEGIQERL  555 (567)
T ss_dssp             GGGGGCTTCCEEECC-SSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSG--GGGSSSCTTHH
T ss_pred             hhhhcCCCCCEEECC-CCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCc--CCCCccHHHHH
Confidence            999999999999999 99988887 89999999999999988 444  7889999999999999986  2222   2223


Q ss_pred             hcCCCCCcEEEe
Q 037494          309 LCELHKLECLKL  320 (394)
Q Consensus       309 l~~~~~L~~L~l  320 (394)
                      +..+++|+.|++
T Consensus       556 ~~~lp~L~~L~l  567 (567)
T 1dce_A          556 AEMLPSVSSILT  567 (567)
T ss_dssp             HHHCTTCSEEEC
T ss_pred             HHHCcccCccCC
Confidence            445788888864

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.31  E-value=5.5e-14  Score=120.35  Aligned_cols=109  Identities=18%  Similarity=0.142  Sum_probs=65.8

Q ss_pred             CCcccccCcccccEEecCCCCCccccccccCCCCCcEEEcc-cCCccccchhhccCccCcEEEeeCCCCCCCCCCCCCCC
Q 037494          186 QFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITLPAPPKNYSSSL  264 (394)
Q Consensus       186 ~lp~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l  264 (394)
                      .+|..++.+++|++|++++|.+..+| .++++++|++|+++ | .+..+|..+..+++|++|+++ +|.+..+| .++.+
T Consensus        39 ~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~-~N~l~~l~-~~~~l  114 (198)
T 1ds9_A           39 KMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWIS-YNQIASLS-GIEKL  114 (198)
T ss_dssp             CCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEE-EEECCCHH-HHHHH
T ss_pred             hhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECc-CCcCCcCC-ccccC
Confidence            33445666666666666666666665 56666666666666 5 566666555556666666666 66555544 45555


Q ss_pred             CcCceeCccccC-CCcc--hhcCCCCCCCeEEEeecC
Q 037494          265 KNLIFISALHPS-SCTP--DILSRLPTVQTLRISGDL  298 (394)
Q Consensus       265 ~~L~~L~~~~~~-~~~~--~~l~~l~~L~~L~l~~~~  298 (394)
                      ++|+.|++.++. ...+  ..+..+++|+.|++++|.
T Consensus       115 ~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~  151 (198)
T 1ds9_A          115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred             CCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCc
Confidence            566666665555 2212  356777777777777775

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.27  E-value=1.5e-11  Score=104.46  Aligned_cols=119  Identities=13%  Similarity=0.094  Sum_probs=92.2

Q ss_pred             cEEecCCCCCccccccccCCCCCcEEEcc-cCCccccchh--hccCccCcEEEeeCCCCCCCC-CCCCCCCCcCceeCcc
Q 037494          198 KYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEG--IWMMQKLMHLNFDSITLPAPP-KNYSSSLKNLIFISAL  273 (394)
Q Consensus       198 ~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~--i~~l~~L~~L~l~~~~~~~~~-p~~l~~l~~L~~L~~~  273 (394)
                      ++++++++.++.+|..+..  +|++|+++ | .+..+|..  ++.+++|++|+++ +|.+..+ |..++.+++|++|++.
T Consensus        11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~~~l~~L~~L~Ls   86 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDN-ELGRISSDGLFGRLPHLVKLELK-RNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TEEECTTSCCSSCCSCCCT--TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECC-SSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CEEEcCCCCcCcCccCCCC--CCCEEECCCC-cCCccCCccccccCCCCCEEECC-CCCCCCcCHhHcCCcccCCEEECC
Confidence            7899999999999987754  89999999 8 88888764  8899999999999 9886666 5668888888888888


Q ss_pred             ccC-C-CcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecC
Q 037494          274 HPS-S-CTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVN  322 (394)
Q Consensus       274 ~~~-~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~  322 (394)
                      ++. . ..+..++.+++|+.|++++|.  .....|..+..+++|+.|++++
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~L~~  135 (192)
T 1w8a_A           87 ENKIKEISNKMFLGLHQLKTLNLYDNQ--ISCVMPGSFEHLNSLTSLNLAS  135 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSC--CCEECTTSSTTCTTCCEEECTT
T ss_pred             CCcCCccCHHHhcCCCCCCEEECCCCc--CCeeCHHHhhcCCCCCEEEeCC
Confidence            877 2 233346777777888877775  4444556666666777777766

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.25  E-value=4.8e-11  Score=101.47  Aligned_cols=118  Identities=16%  Similarity=0.175  Sum_probs=83.2

Q ss_pred             cEEecCCCCCccccccccCCCCCcEEEcc-cCCccccchhhccCccCcEEEeeCCCCCCCCCC-CCCCCCcCceeCcccc
Q 037494          198 KYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITLPAPPKN-YSSSLKNLIFISALHP  275 (394)
Q Consensus       198 ~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L~~~~~  275 (394)
                      ++++++++.++.+|..+.  .+|++|+++ | .+..+|..+..+++|++|+++ +|.+..+++ .++.+++|++|++.++
T Consensus        13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls-~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGN-QFTLVPKELSNYKHLTLIDLS-NNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCCEEECCSS-CCCSCCGGGGGCTTCCEEECC-SSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCCcCCCCCC--CCCCEEECCCC-cCchhHHHhhcccCCCEEECC-CCcCCEeCHhHccCCCCCCEEECCCC
Confidence            678999999999998764  689999999 8 899999899999999999999 988777764 4777777777777766


Q ss_pred             C--CCcchhcCCCCCCCeEEEeecCCccccchh-hhhcCCCCCcEEEecC
Q 037494          276 S--SCTPDILSRLPTVQTLRISGDLSHYHSGVS-KSLCELHKLECLKLVN  322 (394)
Q Consensus       276 ~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~l~~~~~L~~L~l~~  322 (394)
                      .  ...+..+..+++|+.|++++|.  .. .++ ..+..+++|+.|++++
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~--l~-~~~~~~~~~l~~L~~L~L~~  135 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGND--IS-VVPEGAFNDLSALSHLAIGA  135 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSC--CC-BCCTTTTTTCTTCCEEECCS
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCC--CC-eeChhhhhcCccccEEEeCC
Confidence            6  2222345556666666666653  22 222 2344444555555544

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.22  E-value=1.1e-13  Score=118.35  Aligned_cols=126  Identities=17%  Similarity=0.145  Sum_probs=105.5

Q ss_pred             hhHHhccCCceeEEEcCCCCCCCCcccccCcccccEEecCCCCCccccccccCCCCCcEEEcc-cCCccccchhhccCcc
Q 037494          164 CENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQK  242 (394)
Q Consensus       164 l~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~  242 (394)
                      ++..+..+++|++|++++|.++.+| .++.+++|++|++++|.+..+|..++.+++|++|+++ | .+..+| .++.+++
T Consensus        40 l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~-~~~~l~~  116 (198)
T 1ds9_A           40 MDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN-QIASLS-GIEKLVN  116 (198)
T ss_dssp             CHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE-ECCCHH-HHHHHHH
T ss_pred             hhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC-cCCcCC-ccccCCC
Confidence            3445599999999999999999988 8999999999999999999999888888999999999 8 888887 6889999


Q ss_pred             CcEEEeeCCCCCCCCCC--CCCCCCcCceeCccccC-CCc-ch----------hcCCCCCCCeEE
Q 037494          243 LMHLNFDSITLPAPPKN--YSSSLKNLIFISALHPS-SCT-PD----------ILSRLPTVQTLR  293 (394)
Q Consensus       243 L~~L~l~~~~~~~~~p~--~l~~l~~L~~L~~~~~~-~~~-~~----------~l~~l~~L~~L~  293 (394)
                      |++|+++ +|.+..++.  .++.+++|++|++.++. ... +.          .+..+++|+.|+
T Consensus       117 L~~L~l~-~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          117 LRVLYMS-NNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             SSEEEES-EEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred             CCEEECC-CCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence            9999999 988777664  68899999999998887 222 11          256677777665

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.22  E-value=1.1e-10  Score=97.70  Aligned_cols=120  Identities=23%  Similarity=0.260  Sum_probs=69.2

Q ss_pred             eEEEcCCCCCCCCcccccCcccccEEecCCCCCcccccc-ccCCCCCcEEEcc-cCCccccchh-hccCccCcEEEeeCC
Q 037494          175 RVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLL-ICTLLNLETLEMP-AGYIDHSPEG-IWMMQKLMHLNFDSI  251 (394)
Q Consensus       175 ~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~-l~~l~~L~~L~l~-~~~l~~lp~~-i~~l~~L~~L~l~~~  251 (394)
                      +.++++++++..+|..+.  .+|+.|++++|.++.+|.. ++.+++|++|+++ | .+..+|.. +..+++|++|+++ +
T Consensus        10 ~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~-~   85 (177)
T 2o6r_A           10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLH-E   85 (177)
T ss_dssp             TEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECC-S
T ss_pred             CEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECC-C
Confidence            455666666666654332  4666666666666655543 3556666666666 5 55555543 4566666666666 6


Q ss_pred             CCCCCCCCC-CCCCCcCceeCccccC-CCcch-hcCCCCCCCeEEEeecC
Q 037494          252 TLPAPPKNY-SSSLKNLIFISALHPS-SCTPD-ILSRLPTVQTLRISGDL  298 (394)
Q Consensus       252 ~~~~~~p~~-l~~l~~L~~L~~~~~~-~~~~~-~l~~l~~L~~L~l~~~~  298 (394)
                      |.+..+|+. ++.+++|++|++.++. ...+. .+..+++|+.|++++|.
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~  135 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP  135 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence            665555543 4556666666666555 22222 24556666666666665

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.15  E-value=1.6e-10  Score=96.42  Aligned_cols=98  Identities=21%  Similarity=0.232  Sum_probs=74.4

Q ss_pred             eEEEcCCCCCCCCcccccCcccccEEecCCCCCccc-cccccCCCCCcEEEcc-cCCccccchh-hccCccCcEEEeeCC
Q 037494          175 RVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCL-PLLICTLLNLETLEMP-AGYIDHSPEG-IWMMQKLMHLNFDSI  251 (394)
Q Consensus       175 ~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~l~-~~~l~~lp~~-i~~l~~L~~L~l~~~  251 (394)
                      +.++++++.+..+|..+.  .+|++|++++|.+..+ |..++++++|++|+++ | .+..+|.. +..+++|++|+++ +
T Consensus        15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~-~   90 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLN-D   90 (174)
T ss_dssp             SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECC-S
T ss_pred             cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECC-C
Confidence            577888888888877664  6788888888888776 4457778888888888 7 77777765 4678888888888 8


Q ss_pred             CCCCCCCCC-CCCCCcCceeCccccC
Q 037494          252 TLPAPPKNY-SSSLKNLIFISALHPS  276 (394)
Q Consensus       252 ~~~~~~p~~-l~~l~~L~~L~~~~~~  276 (394)
                      |.+..+|+. ++.+++|+.|++.++.
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~  116 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNP  116 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred             CccceeCHHHhccccCCCEEEeCCCC
Confidence            777777765 6777777777777665

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.14  E-value=3.2e-10  Score=94.87  Aligned_cols=124  Identities=15%  Similarity=0.115  Sum_probs=84.5

Q ss_pred             CcEEEcc-cCCccccchhhccCccCcEEEeeCCCCCCCCCCC-CCCCCcCceeCccccC-CCcc-hhcCCCCCCCeEEEe
Q 037494          220 LETLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITLPAPPKNY-SSSLKNLIFISALHPS-SCTP-DILSRLPTVQTLRIS  295 (394)
Q Consensus       220 L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~-l~~l~~L~~L~~~~~~-~~~~-~~l~~l~~L~~L~l~  295 (394)
                      .+.++++ + .+..+|..+.  ++|+.|+++ ++.+..+|+. ++.+++|++|++.++. ...+ ..++.+++|+.|+++
T Consensus         9 ~~~l~~~~~-~l~~~p~~~~--~~l~~L~l~-~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   84 (177)
T 2o6r_A            9 GTEIRCNSK-GLTSVPTGIP--SSATRLELE-SNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH   84 (177)
T ss_dssp             TTEEECCSS-CCSSCCTTCC--TTCSEEECC-SSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEecCC-CCccCCCCCC--CCCcEEEeC-CCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence            4678888 6 7888886543  689999999 8887777654 5778888888887776 3333 335677777777777


Q ss_pred             ecCCccccchhhhhcCCCCCcEEEecCCCCCCccCC--CCCCCCCCceEEEEecccCCC
Q 037494          296 GDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVL--SEYQFPPSLIQLSLSNTELME  352 (394)
Q Consensus       296 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p--~~~~~l~~L~~L~L~~~~l~~  352 (394)
                      +|.  .....+..+..+++|+.|++++ +.+..+ |  .+.. +++|+.|++++|.+.+
T Consensus        85 ~N~--l~~~~~~~~~~l~~L~~L~l~~-N~l~~~-~~~~~~~-l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           85 ENK--LQSLPNGVFDKLTQLKELALDT-NQLKSV-PDGIFDR-LTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             SSC--CCCCCTTTTTTCTTCCEEECCS-SCCSCC-CTTTTTT-CTTCCEEECCSSCBCC
T ss_pred             CCC--ccccCHHHhhCCcccCEEECcC-CcceEe-CHHHhcC-CcccCEEEecCCCeec
Confidence            775  3333333456667777777776 566666 4  3455 6777777777777654

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.14  E-value=2e-10  Score=95.57  Aligned_cols=99  Identities=19%  Similarity=0.204  Sum_probs=78.0

Q ss_pred             eeEEEcCCCCCCCCcccccCcccccEEecCCCCCccc-cccccCCCCCcEEEcc-cCCccccchh-hccCccCcEEEeeC
Q 037494          174 LRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCL-PLLICTLLNLETLEMP-AGYIDHSPEG-IWMMQKLMHLNFDS  250 (394)
Q Consensus       174 L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~l~-~~~l~~lp~~-i~~l~~L~~L~l~~  250 (394)
                      .++++++++.++.+|..+.  .+|++|++++|.++.+ |..++++++|++|+++ | .+..+|.. +..+++|++|+++ 
T Consensus        11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~-   86 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLN-   86 (170)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECC-
T ss_pred             CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECC-
Confidence            4678888888888887664  7888888888888877 4557888888888888 7 78888765 4688888888888 


Q ss_pred             CCCCCCCCCC-CCCCCcCceeCccccC
Q 037494          251 ITLPAPPKNY-SSSLKNLIFISALHPS  276 (394)
Q Consensus       251 ~~~~~~~p~~-l~~l~~L~~L~~~~~~  276 (394)
                      +|.+..+|+. ++.+++|+.|++.++.
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~  113 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNP  113 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCC
Confidence            8887777764 6777777777777665

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.12  E-value=6.6e-11  Score=109.38  Aligned_cols=84  Identities=14%  Similarity=0.100  Sum_probs=64.7

Q ss_pred             CCCCCeEEEeecCCccccchh-hhhcCCCCCcEEEecCCCCCCccCC-CCCCCCCCce-EEEEecccCCCCCcccccCCC
Q 037494          286 LPTVQTLRISGDLSHYHSGVS-KSLCELHKLECLKLVNGSKLSRMVL-SEYQFPPSLI-QLSLSNTELMEDPMPMLERLP  362 (394)
Q Consensus       286 l~~L~~L~l~~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~L~~L~p-~~~~~l~~L~-~L~L~~~~l~~~~~~~l~~l~  362 (394)
                      +++|+.+++.++.   ...++ ..|..+++|+.+++.+  +++.+.+ .|.. +++|+ .+++.+ .++......+.+++
T Consensus       225 ~~~L~~l~L~~n~---i~~I~~~aF~~~~~L~~l~l~~--ni~~I~~~aF~~-~~~L~~~l~l~~-~l~~I~~~aF~~c~  297 (329)
T 3sb4_A          225 MPNLVSLDISKTN---ATTIPDFTFAQKKYLLKIKLPH--NLKTIGQRVFSN-CGRLAGTLELPA-SVTAIEFGAFMGCD  297 (329)
T ss_dssp             CTTCCEEECTTBC---CCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTT-CTTCCEEEEECT-TCCEECTTTTTTCT
T ss_pred             cCCCeEEECCCCC---cceecHhhhhCCCCCCEEECCc--ccceehHHHhhC-ChhccEEEEEcc-cceEEchhhhhCCc
Confidence            6789999998774   33444 4688889999999975  4888833 7777 89999 999988 66666667788999


Q ss_pred             CCCeEEEecccccC
Q 037494          363 RLQVMKLKRNSYFG  376 (394)
Q Consensus       363 ~L~~L~l~~n~~~~  376 (394)
                      +|+.++++.|.+..
T Consensus       298 ~L~~l~l~~n~i~~  311 (329)
T 3sb4_A          298 NLRYVLATGDKITT  311 (329)
T ss_dssp             TEEEEEECSSCCCE
T ss_pred             cCCEEEeCCCccCc
Confidence            99999997766543

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.12  E-value=4.1e-11  Score=129.81  Aligned_cols=91  Identities=24%  Similarity=0.343  Sum_probs=80.6

Q ss_pred             chhHHHHHHhcccCCCchhhHHHhccccccCCCceechHHHHHHHHhcCCCCCChHHHHHHHHHHHHhcCceeeeecCCC
Q 037494            6 EAILTVWRQIYSVMELPFHLKVYCIYLCVFCPSIEISTRQLCQLWIAEGFIPYNSEETAEYYLKELIHRGFIQVSKRRAG   85 (394)
Q Consensus         6 ~~i~~~lk~~~SY~~L~~~~k~cfl~~~~Fp~~~~i~~~~Li~~wia~gfi~~~~~~~~~~~l~~L~~~~ll~~~~~~~~   85 (394)
                      +.+..+++  +||+.||.++|.||+|||+||+++.|+++.++.+|.++       ++.++.++++|++++|++...   +
T Consensus       362 ~~~~~~l~--~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-------~~~~~~~l~~L~~~sl~~~~~---~  429 (1249)
T 3sfz_A          362 EALDEAMS--ISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE-------TEEVEDILQEFVNKSLLFCNR---N  429 (1249)
T ss_dssp             HHHHHHHH--HHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-------HHHHHHHHHHHHHTTSCEEEE---S
T ss_pred             HHHHHHHH--HHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC-------HHHHHHHHHHHHhccceEEec---C
Confidence            35889999  99999999999999999999999999999999999876       355899999999999999765   3


Q ss_pred             CcEeEEEcCHHHHHHHHHHhccc
Q 037494           86 GTIKACYVPSLVYYSLLLVAEKT  108 (394)
Q Consensus        86 g~~~~~~mhdli~~l~~~~~~~~  108 (394)
                      |+..+++|||+++++++..+.++
T Consensus       430 ~~~~~~~~h~l~~~~~~~~~~~~  452 (1249)
T 3sfz_A          430 GKSFCYYLHDLQVDFLTEKNRSQ  452 (1249)
T ss_dssp             SSSEEEECCHHHHHHHHHHTGGG
T ss_pred             CCceEEEecHHHHHHHHhhhhHH
Confidence            44467999999999999887655

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=99.10  E-value=3.6e-11  Score=123.20  Aligned_cols=85  Identities=18%  Similarity=0.172  Sum_probs=74.6

Q ss_pred             CchhHHHHHHhcccCCCchhh-HHHhccccccCCCceechHHHHHHHHhcCCCCCChHHHHHHHHHHHHhcCceeeeecC
Q 037494            5 GEAILTVWRQIYSVMELPFHL-KVYCIYLCVFCPSIEISTRQLCQLWIAEGFIPYNSEETAEYYLKELIHRGFIQVSKRR   83 (394)
Q Consensus         5 ~~~i~~~lk~~~SY~~L~~~~-k~cfl~~~~Fp~~~~i~~~~Li~~wia~gfi~~~~~~~~~~~l~~L~~~~ll~~~~~~   83 (394)
                      ++.|..+|+  +||+.||.++ |+||+|||+||+++.|+++.++.+|+++|      ++.++.++++|+++||++...  
T Consensus       352 ~~~I~aaLe--lSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG------eedAe~~L~eLvdRSLLq~d~--  421 (1221)
T 1vt4_I          352 CDKLTTIIE--SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI------KSDVMVVVNKLHKYSLVEKQP--  421 (1221)
T ss_dssp             CHHHHHHHH--HHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC------SHHHHHHHHHHHTSSSSSBCS--
T ss_pred             hhHHHHHHH--HHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC------HHHHHHHHHHHHhhCCEEEeC--
Confidence            457899999  9999999999 99999999999999999999999999987      245889999999999998842  


Q ss_pred             CCCcEeEEEcCHHHHHHHH
Q 037494           84 AGGTIKACYVPSLVYYSLL  102 (394)
Q Consensus        84 ~~g~~~~~~mhdli~~l~~  102 (394)
                         ...+++|||++++++.
T Consensus       422 ---~~~rYrMHDLllELr~  437 (1221)
T 1vt4_I          422 ---KESTISIPSIYLELKV  437 (1221)
T ss_dssp             ---SSSEEBCCCHHHHHHH
T ss_pred             ---CCCEEEehHHHHHHhc
Confidence               2256999999998663

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.01  E-value=6.5e-10  Score=92.76  Aligned_cols=106  Identities=14%  Similarity=0.080  Sum_probs=84.3

Q ss_pred             cEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCC-cccccCcccccEEecCCCCCccccccc-cCCCCCcEEE
Q 037494          147 QSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQF-PPGLENLFLLKYLQLNIPTLKCLPLLI-CTLLNLETLE  224 (394)
Q Consensus       147 r~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~l~~lp~~l-~~l~~L~~L~  224 (394)
                      +.+.+.++...     .+|.-  -.++|++|++++|.++.+ |..++.+++|++|++++|.++.+|..+ .++++|++|+
T Consensus        15 ~~l~~~~n~l~-----~iP~~--~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~   87 (174)
T 2r9u_A           15 TLVNCQNIRLA-----SVPAG--IPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLD   87 (174)
T ss_dssp             SEEECCSSCCS-----SCCSC--CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cEEEeCCCCCC-----ccCCC--cCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEE
Confidence            45666665554     33321  137899999999999977 567899999999999999999998764 7899999999


Q ss_pred             cc-cCCccccchh-hccCccCcEEEeeCCCCCCCCCCCC
Q 037494          225 MP-AGYIDHSPEG-IWMMQKLMHLNFDSITLPAPPKNYS  261 (394)
Q Consensus       225 l~-~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~l  261 (394)
                      ++ | .+..+|.. +..+++|++|+++ +|.....+..+
T Consensus        88 L~~N-~l~~l~~~~~~~l~~L~~L~L~-~N~~~c~~~~~  124 (174)
T 2r9u_A           88 LNDN-HLKSIPRGAFDNLKSLTHIYLY-NNPWDCECRDI  124 (174)
T ss_dssp             CCSS-CCCCCCTTTTTTCTTCSEEECC-SSCBCTTBGGG
T ss_pred             CCCC-ccceeCHHHhccccCCCEEEeC-CCCcccccccH
Confidence            99 8 89899875 8889999999999 88766555433

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.99  E-value=2.4e-10  Score=105.58  Aligned_cols=86  Identities=15%  Similarity=0.119  Sum_probs=49.3

Q ss_pred             CCCCccEEEEecCCCccchhcchhHHhcc-CCceeEEEcCCCCCCC--------------------Cc-ccccC------
Q 037494          142 SDMYLQSFLNHSSESDHLALIDCENFCEN-FKYLRVLNWGSAVLDQ--------------------FP-PGLEN------  193 (394)
Q Consensus       142 ~~~~lr~L~l~~~~~~~~~~~~l~~~~~~-l~~L~~L~l~~~~~~~--------------------lp-~~i~~------  193 (394)
                      ...+++.|.+.+.-.    ..++..+ .. +++|++|+|++|.+..                    +| ..+.+      
T Consensus        23 ~~~~l~~L~l~g~i~----~~~~~~l-~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~   97 (329)
T 3sb4_A           23 EANSITHLTLTGKLN----AEDFRHL-RDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVT   97 (329)
T ss_dssp             HHHHCSEEEEEEEEC----HHHHHHH-HHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEE
T ss_pred             hhCceeEEEEecccc----HHHHHHH-HHhhccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccc
Confidence            456788888886422    2244445 44 8899999999999771                    11 22333      


Q ss_pred             --cccccEEecCCCCCcccccc-ccCCCCCcEEEcc-cCCccccc
Q 037494          194 --LFLLKYLQLNIPTLKCLPLL-ICTLLNLETLEMP-AGYIDHSP  234 (394)
Q Consensus       194 --l~~L~~L~l~~~~l~~lp~~-l~~l~~L~~L~l~-~~~l~~lp  234 (394)
                        +.+|+.+.+.. .++.+++. +..+.+|+.++++ + .+..++
T Consensus        98 ~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n-~i~~i~  140 (329)
T 3sb4_A           98 KGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKK-TAPNLL  140 (329)
T ss_dssp             EECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCS-SCCEEC
T ss_pred             cccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCC-Cccccc
Confidence              55555555555 45544432 4455555555555 4 444444

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.98  E-value=1.4e-08  Score=96.11  Aligned_cols=214  Identities=9%  Similarity=0.053  Sum_probs=141.2

Q ss_pred             CccEEEEecCCCccchhcch-hHHhccCCceeEEEcCCCCCCCCc-ccccCcccccEEecCCCCCccccccccCCCCCcE
Q 037494          145 YLQSFLNHSSESDHLALIDC-ENFCENFKYLRVLNWGSAVLDQFP-PGLENLFLLKYLQLNIPTLKCLPLLICTLLNLET  222 (394)
Q Consensus       145 ~lr~L~l~~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~  222 (394)
                      +|+++.+..+ ..     .+ ...|.++ .|+.+.+.. .++.++ .++.++.+|+.+++.+|.++.+|.......+|+.
T Consensus       136 ~L~~i~l~~~-i~-----~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~  207 (401)
T 4fdw_A          136 QIAKVVLNEG-LK-----SIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEE  207 (401)
T ss_dssp             CCSEEECCTT-CC-----EECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSE
T ss_pred             CccEEEeCCC-cc-----EECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCE
Confidence            5777776544 22     22 2222553 688888875 566554 6677888899999988888888877666788888


Q ss_pred             EEcccCCccccch-hhccCccCcEEEeeCCCCCCCCCCC-CCCCCcCceeCccccC-CCcchhcCCCCCCCeEEEeecCC
Q 037494          223 LEMPAGYIDHSPE-GIWMMQKLMHLNFDSITLPAPPKNY-SSSLKNLIFISALHPS-SCTPDILSRLPTVQTLRISGDLS  299 (394)
Q Consensus       223 L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~-l~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~  299 (394)
                      +.+.. .+..++. .+..+++|+.+.+. .+ +..++.. +.+ .+|+.+.+...- .-....+..+++|+.+.+.++..
T Consensus       208 l~lp~-~l~~I~~~aF~~~~~L~~l~l~-~~-l~~I~~~aF~~-~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~  283 (401)
T 4fdw_A          208 VLLPV-TLKEIGSQAFLKTSQLKTIEIP-EN-VSTIGQEAFRE-SGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTF  283 (401)
T ss_dssp             EECCT-TCCEECTTTTTTCTTCCCEECC-TT-CCEECTTTTTT-CCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCC
T ss_pred             EEeCC-chheehhhHhhCCCCCCEEecC-CC-ccCcccccccc-CCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccc
Confidence            88872 3666664 46678888888887 53 3333332 444 677777774322 22234577788899888877641


Q ss_pred             c--cc-cchhhhhcCCCCCcEEEecCCCCCCccCC-CCCCCCCCceEEEEecccCCCCCcccccCCCCCCeEEEeccccc
Q 037494          300 H--YH-SGVSKSLCELHKLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYF  375 (394)
Q Consensus       300 ~--~~-~~~~~~l~~~~~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~  375 (394)
                      .  .. .--...+..+++|+.+.+.  ++++.+.. .|.. +++|+.+.|..+ ++......+.++ +|+.+.+++|...
T Consensus       284 ~~~~~~~I~~~aF~~c~~L~~l~l~--~~i~~I~~~aF~~-c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~  358 (401)
T 4fdw_A          284 NDDPEAMIHPYCLEGCPKLARFEIP--ESIRILGQGLLGG-NRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP  358 (401)
T ss_dssp             CCCTTCEECTTTTTTCTTCCEECCC--TTCCEECTTTTTT-CCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred             cCCcccEECHHHhhCCccCCeEEeC--CceEEEhhhhhcC-CCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence            0  11 1223567788888888886  35777723 6777 888888888654 444455667788 8888888776543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.92  E-value=4.7e-09  Score=87.15  Aligned_cols=99  Identities=13%  Similarity=0.060  Sum_probs=84.9

Q ss_pred             cccEEecCCCCCccccccccCCCCCcEEEcc-cCCccccc-hhhccCccCcEEEeeCCCCCCCCCCC-CCCCCcCceeCc
Q 037494          196 LLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSP-EGIWMMQKLMHLNFDSITLPAPPKNY-SSSLKNLIFISA  272 (394)
Q Consensus       196 ~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~-l~~l~~L~~L~~  272 (394)
                      ..+.++++++.++.+|..+.  .+|++|+++ | .+..++ ..+..+++|++|+++ +|.+..+|+. ++.+++|++|++
T Consensus        10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls-~N~l~~l~~~~f~~l~~L~~L~L   85 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLD-NNQLTVLPAGVFDKLTQLTQLSL   85 (170)
T ss_dssp             ETTEEECTTSCCSSCCSCCC--TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECC-SSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEEeCCCCcCccCccCC--CCCcEEEcCCC-cCCccChhhhcCcccCCEEECC-CCCcCccChhhccCCCCCCEEEC
Confidence            45789999999999998774  899999999 8 888884 568899999999999 9998888876 589999999999


Q ss_pred             cccC-CCcch-hcCCCCCCCeEEEeecC
Q 037494          273 LHPS-SCTPD-ILSRLPTVQTLRISGDL  298 (394)
Q Consensus       273 ~~~~-~~~~~-~l~~l~~L~~L~l~~~~  298 (394)
                      .++. ...+. .+..+++|+.|++++|.
T Consensus        86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~  113 (170)
T 3g39_A           86 NDNQLKSIPRGAFDNLKSLTHIWLLNNP  113 (170)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCccCEeCHHHhcCCCCCCEEEeCCCC
Confidence            9888 44443 58889999999999986

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.91  E-value=2.8e-08  Score=94.15  Aligned_cols=232  Identities=11%  Similarity=0.097  Sum_probs=165.0

Q ss_pred             ceEEEEEEeCCcchhhcc--CCCCCccEEEEecCCCccchhcch-hHHhccCCceeEEEcCCCCCCCCcccccCcccccE
Q 037494          123 TVKRCFILEDLIEFISLE--QSDMYLQSFLNHSSESDHLALIDC-ENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKY  199 (394)
Q Consensus       123 ~~r~L~l~~~~~~~~~~~--~~~~~lr~L~l~~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~  199 (394)
                      +++.+.+. +....+...  .. .+|+++.+.. ...     .+ ...|..+++|+.++++++.++.++.......+|+.
T Consensus       136 ~L~~i~l~-~~i~~I~~~aF~~-~~L~~i~lp~-~l~-----~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~  207 (401)
T 4fdw_A          136 QIAKVVLN-EGLKSIGDMAFFN-STVQEIVFPS-TLE-----QLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEE  207 (401)
T ss_dssp             CCSEEECC-TTCCEECTTTTTT-CCCCEEECCT-TCC-----EECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSE
T ss_pred             CccEEEeC-CCccEECHHhcCC-CCceEEEeCC-Ccc-----EehHHHhhCcccCCeeecCCCcceEechhhEeecccCE
Confidence            45566655 444444333  23 4688887765 222     33 34459999999999999999988855555789999


Q ss_pred             EecCCCCCccccc-cccCCCCCcEEEcccCCccccchhhccCccCcEEEeeCCCCCCCCC-CCCCCCCcCceeCccccC-
Q 037494          200 LQLNIPTLKCLPL-LICTLLNLETLEMPAGYIDHSPEGIWMMQKLMHLNFDSITLPAPPK-NYSSSLKNLIFISALHPS-  276 (394)
Q Consensus       200 L~l~~~~l~~lp~-~l~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~~~~~~-  276 (394)
                      +.+..+ ++.++. .+.++.+|+.+++.. .+..++.....-.+|+.+.+. .+ +..++ ..+..+++|+.+.+..+. 
T Consensus       208 l~lp~~-l~~I~~~aF~~~~~L~~l~l~~-~l~~I~~~aF~~~~L~~i~lp-~~-i~~I~~~aF~~c~~L~~l~l~~~~~  283 (401)
T 4fdw_A          208 VLLPVT-LKEIGSQAFLKTSQLKTIEIPE-NVSTIGQEAFRESGITTVKLP-NG-VTNIASRAFYYCPELAEVTTYGSTF  283 (401)
T ss_dssp             EECCTT-CCEECTTTTTTCTTCCCEECCT-TCCEECTTTTTTCCCSEEEEE-TT-CCEECTTTTTTCTTCCEEEEESSCC
T ss_pred             EEeCCc-hheehhhHhhCCCCCCEEecCC-CccCccccccccCCccEEEeC-CC-ccEEChhHhhCCCCCCEEEeCCccc
Confidence            999854 777664 467889999999983 367777654444899999997 54 34443 457889999999887654 


Q ss_pred             C------CcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCccCC-CCCCCCCCceEEEEeccc
Q 037494          277 S------CTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTE  349 (394)
Q Consensus       277 ~------~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~  349 (394)
                      .      -....+..+++|+.+.+...   ...--...+..+++|+.+.|.  .++..+.+ .|.. + +|+.+++.+|.
T Consensus       284 ~~~~~~~I~~~aF~~c~~L~~l~l~~~---i~~I~~~aF~~c~~L~~l~lp--~~l~~I~~~aF~~-~-~L~~l~l~~n~  356 (401)
T 4fdw_A          284 NDDPEAMIHPYCLEGCPKLARFEIPES---IRILGQGLLGGNRKVTQLTIP--ANVTQINFSAFNN-T-GIKEVKVEGTT  356 (401)
T ss_dssp             CCCTTCEECTTTTTTCTTCCEECCCTT---CCEECTTTTTTCCSCCEEEEC--TTCCEECTTSSSS-S-CCCEEEECCSS
T ss_pred             cCCcccEECHHHhhCCccCCeEEeCCc---eEEEhhhhhcCCCCccEEEEC--ccccEEcHHhCCC-C-CCCEEEEcCCC
Confidence            1      23356778899999988742   222223567888999999996  46888844 7888 8 99999999998


Q ss_pred             CCCCCcccccCCC-CCCeEEEeccc
Q 037494          350 LMEDPMPMLERLP-RLQVMKLKRNS  373 (394)
Q Consensus       350 l~~~~~~~l~~l~-~L~~L~l~~n~  373 (394)
                      ........+.+++ +++.|.+-.+.
T Consensus       357 ~~~l~~~~F~~~~~~l~~l~vp~~~  381 (401)
T 4fdw_A          357 PPQVFEKVWYGFPDDITVIRVPAES  381 (401)
T ss_dssp             CCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred             CcccccccccCCCCCccEEEeCHHH
Confidence            7665556677775 78999996554

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=98.83  E-value=3.1e-09  Score=106.16  Aligned_cols=88  Identities=25%  Similarity=0.347  Sum_probs=76.4

Q ss_pred             chhHHHHHHhcccCCCchhhHHHhccccccCCCceechHHHHHHHHhcCCCCCChHHHHHHHHHHHHhcCceeeeecCCC
Q 037494            6 EAILTVWRQIYSVMELPFHLKVYCIYLCVFCPSIEISTRQLCQLWIAEGFIPYNSEETAEYYLKELIHRGFIQVSKRRAG   85 (394)
Q Consensus         6 ~~i~~~lk~~~SY~~L~~~~k~cfl~~~~Fp~~~~i~~~~Li~~wia~gfi~~~~~~~~~~~l~~L~~~~ll~~~~~~~~   85 (394)
                      +.|..+++  .||+.||.+.|.||++||+||+|+.|+.+.++.+|.++       .+.++.++++|++++|++....   
T Consensus       362 ~~l~~~l~--~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-------~~~~~~~l~~L~~~~Ll~~~~~---  429 (591)
T 1z6t_A          362 EALDEAMS--ISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME-------TEEVEDILQEFVNKSLLFCDRN---  429 (591)
T ss_dssp             HHHHHHHH--HHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-------HHHHHHHHHHHHHTTSSEEEEE---
T ss_pred             HHHHHHHH--HHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC-------HHHHHHHHHHHHhCcCeEEecC---
Confidence            46888999  99999999999999999999999999999999999764       2347889999999999987553   


Q ss_pred             CcEeEEEcCHHHHHHHHHHh
Q 037494           86 GTIKACYVPSLVYYSLLLVA  105 (394)
Q Consensus        86 g~~~~~~mhdli~~l~~~~~  105 (394)
                      |...+++||++++++++...
T Consensus       430 ~~~~~~~~H~lv~~~~~~~~  449 (591)
T 1z6t_A          430 GKSFRYYLHDLQVDFLTEKN  449 (591)
T ss_dssp             TTEEEEECCHHHHHHHHHHT
T ss_pred             CCccEEEEcHHHHHHHHhhh
Confidence            34467999999999998773

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.80  E-value=1.4e-08  Score=94.37  Aligned_cols=95  Identities=15%  Similarity=0.049  Sum_probs=42.0

Q ss_pred             EcCCC-CCCCCcccccCcccccEEecCC-CCCcccc-ccccCCCCCcEEEcc-cCCccccch-hhccCccCcEEEeeCCC
Q 037494          178 NWGSA-VLDQFPPGLENLFLLKYLQLNI-PTLKCLP-LLICTLLNLETLEMP-AGYIDHSPE-GIWMMQKLMHLNFDSIT  252 (394)
Q Consensus       178 ~l~~~-~~~~lp~~i~~l~~L~~L~l~~-~~l~~lp-~~l~~l~~L~~L~l~-~~~l~~lp~-~i~~l~~L~~L~l~~~~  252 (394)
                      +.+++ .++.+|. +..+++|+.|+|++ |.+..+| ..++++.+|++|+|+ | .+..+|+ .++.+++|++|+++ +|
T Consensus        14 ~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~-~N   90 (347)
T 2ifg_A           14 RCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLS-FN   90 (347)
T ss_dssp             ECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECC-SS
T ss_pred             EcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCC-CC
Confidence            44444 4444444 44444455555543 4444444 234444455555554 4 4444432 23444455555554 44


Q ss_pred             CCCCCCCCCCCCCcCceeCcccc
Q 037494          253 LPAPPKNYSSSLKNLIFISALHP  275 (394)
Q Consensus       253 ~~~~~p~~l~~l~~L~~L~~~~~  275 (394)
                      .+..+|+.+.....|+.|.+.++
T Consensus        91 ~l~~~~~~~~~~~~L~~l~l~~N  113 (347)
T 2ifg_A           91 ALESLSWKTVQGLSLQELVLSGN  113 (347)
T ss_dssp             CCSCCCSTTTCSCCCCEEECCSS
T ss_pred             ccceeCHHHcccCCceEEEeeCC
Confidence            44444433222222444444443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.65  E-value=4.9e-08  Score=90.62  Aligned_cols=89  Identities=13%  Similarity=0.033  Sum_probs=67.8

Q ss_pred             chhHHhccCCceeEEEcCC-CCCCCCc-ccccCcccccEEecCCCCCccccc-cccCCCCCcEEEcc-cCCccccchhhc
Q 037494          163 DCENFCENFKYLRVLNWGS-AVLDQFP-PGLENLFLLKYLQLNIPTLKCLPL-LICTLLNLETLEMP-AGYIDHSPEGIW  238 (394)
Q Consensus       163 ~l~~~~~~l~~L~~L~l~~-~~~~~lp-~~i~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~-~~~l~~lp~~i~  238 (394)
                      .+|. +..+++|++|+|++ |.+..+| ..++.+.+|++|+|++|.+..+|+ .++++++|++|+|+ | .+..+|..+.
T Consensus        23 ~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~  100 (347)
T 2ifg_A           23 SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN-ALESLSWKTV  100 (347)
T ss_dssp             TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS-CCSCCCSTTT
T ss_pred             ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC-ccceeCHHHc
Confidence            3455 48888888888885 8888776 568888888888888888887665 46788888888888 7 7888887655


Q ss_pred             cCccCcEEEeeCCCCC
Q 037494          239 MMQKLMHLNFDSITLP  254 (394)
Q Consensus       239 ~l~~L~~L~l~~~~~~  254 (394)
                      ...+|+.|++. +|.+
T Consensus       101 ~~~~L~~l~l~-~N~~  115 (347)
T 2ifg_A          101 QGLSLQELVLS-GNPL  115 (347)
T ss_dssp             CSCCCCEEECC-SSCC
T ss_pred             ccCCceEEEee-CCCc
Confidence            54458888888 7663

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.64  E-value=4.4e-09  Score=98.65  Aligned_cols=109  Identities=17%  Similarity=0.066  Sum_probs=61.1

Q ss_pred             CCCccEEEEecCCCccchhcchhHHhc-cCCceeEEEcCCCCCCC--CcccccCcccccEEecCCCCCcccc-----ccc
Q 037494          143 DMYLQSFLNHSSESDHLALIDCENFCE-NFKYLRVLNWGSAVLDQ--FPPGLENLFLLKYLQLNIPTLKCLP-----LLI  214 (394)
Q Consensus       143 ~~~lr~L~l~~~~~~~~~~~~l~~~~~-~l~~L~~L~l~~~~~~~--lp~~i~~l~~L~~L~l~~~~l~~lp-----~~l  214 (394)
                      .+.++.|.+.++.........+...+. ..++|++|++++|.+..  +..-...+.+|+.|++++|.+....     ..+
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            345777777777665211112222223 23577777777777652  1122224556777777777765321     222


Q ss_pred             -cCCCCCcEEEcc-cCCccc-----cchhhccCccCcEEEeeCCCC
Q 037494          215 -CTLLNLETLEMP-AGYIDH-----SPEGIWMMQKLMHLNFDSITL  253 (394)
Q Consensus       215 -~~l~~L~~L~l~-~~~l~~-----lp~~i~~l~~L~~L~l~~~~~  253 (394)
                       ...++|++|+++ | .+..     ++..+...++|++|+++ +|.
T Consensus       151 ~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls-~N~  194 (372)
T 3un9_A          151 LHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLL-HTG  194 (372)
T ss_dssp             HSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECT-TSS
T ss_pred             HhcCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCC-CCC
Confidence             235677777777 6 5543     34445666777777777 665

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.53  E-value=3.4e-09  Score=99.48  Aligned_cols=82  Identities=16%  Similarity=0.128  Sum_probs=51.2

Q ss_pred             CCceeEEEcCCCCCCCC-----ccccc-CcccccEEecCCCCCcc--ccccccCCCCCcEEEcc-cCCccccch-h----
Q 037494          171 FKYLRVLNWGSAVLDQF-----PPGLE-NLFLLKYLQLNIPTLKC--LPLLICTLLNLETLEMP-AGYIDHSPE-G----  236 (394)
Q Consensus       171 l~~L~~L~l~~~~~~~l-----p~~i~-~l~~L~~L~l~~~~l~~--lp~~l~~l~~L~~L~l~-~~~l~~lp~-~----  236 (394)
                      ++.|+.|++++|.+...     ...+. ...+|+.|+|++|.+..  +..-...+.+|++|+++ | .+..... .    
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~  149 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDL  149 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHH
Confidence            46788999999988732     22222 22688999999888753  21112235578888888 7 6644321 1    


Q ss_pred             h-ccCccCcEEEeeCCCCC
Q 037494          237 I-WMMQKLMHLNFDSITLP  254 (394)
Q Consensus       237 i-~~l~~L~~L~l~~~~~~  254 (394)
                      + ...++|++|+++ +|.+
T Consensus       150 L~~~~~~L~~L~Ls-~n~l  167 (372)
T 3un9_A          150 LLHDQCQITTLRLS-NNPL  167 (372)
T ss_dssp             HHSTTCCCCEEECC-SSCC
T ss_pred             HHhcCCccceeeCC-CCCC
Confidence            2 235678888887 6653

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.44  E-value=3e-08  Score=92.43  Aligned_cols=210  Identities=16%  Similarity=0.160  Sum_probs=111.7

Q ss_pred             CCCCCccEEEEecCCCccchh-cchhHH---hccCCceeEEEcCCCCCC----------CCcccccCcccccEEecCCCC
Q 037494          141 QSDMYLQSFLNHSSESDHLAL-IDCENF---CENFKYLRVLNWGSAVLD----------QFPPGLENLFLLKYLQLNIPT  206 (394)
Q Consensus       141 ~~~~~lr~L~l~~~~~~~~~~-~~l~~~---~~~l~~L~~L~l~~~~~~----------~lp~~i~~l~~L~~L~l~~~~  206 (394)
                      .....++.|.+-......-.. ..++.+   ..++++|+.|.+.+...+          .+...+..+++|+.|.++++.
T Consensus       104 ~~~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~  183 (362)
T 2ra8_A          104 KKLPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTN  183 (362)
T ss_dssp             TTGGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCB
T ss_pred             CCchhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCC
Confidence            455567777766443210000 011221   256788888888654322          233444566778888887763


Q ss_pred             CccccccccCCCCCcEEEcc-cCCcccc-chhhc--cCccCcEEEeeCCCCCCCCCCCCCCCCcCceeCccccCCCcchh
Q 037494          207 LKCLPLLICTLLNLETLEMP-AGYIDHS-PEGIW--MMQKLMHLNFDSITLPAPPKNYSSSLKNLIFISALHPSSCTPDI  282 (394)
Q Consensus       207 l~~lp~~l~~l~~L~~L~l~-~~~l~~l-p~~i~--~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~~~~~  282 (394)
                      -..+|. +. +++|++|++. | .+..- ...+.  .+++|++|+++ .+...  +.+-..+..+..+         . .
T Consensus       184 ~l~l~~-~~-~~~L~~L~L~~~-~l~~~~l~~l~~~~lp~L~~L~L~-~~~~~--~~~~~~~~~l~~~---------l-~  247 (362)
T 2ra8_A          184 NLSIGK-KP-RPNLKSLEIISG-GLPDSVVEDILGSDLPNLEKLVLY-VGVED--YGFDGDMNVFRPL---------F-S  247 (362)
T ss_dssp             TCBCCS-CB-CTTCSEEEEECS-BCCHHHHHHHHHSBCTTCCEEEEE-CBCGG--GTCCSCGGGTGGG---------S-C
T ss_pred             Cceecc-cc-CCCCcEEEEecC-CCChHHHHHHHHccCCCCcEEEEe-ccccc--cccchhHHHHHHH---------H-h
Confidence            223443 33 6778888887 6 43221 11232  57778887775 32100  0000001111100         0 0


Q ss_pred             cCCCCCCCeEEEeecCCccccchhhhh---cCCCCCcEEEecCCCCCCc-----cCC-CCCCCCCCceEEEEecccCCCC
Q 037494          283 LSRLPTVQTLRISGDLSHYHSGVSKSL---CELHKLECLKLVNGSKLSR-----MVL-SEYQFPPSLIQLSLSNTELMED  353 (394)
Q Consensus       283 l~~l~~L~~L~l~~~~~~~~~~~~~~l---~~~~~L~~L~l~~~~~L~~-----L~p-~~~~~l~~L~~L~L~~~~l~~~  353 (394)
                      .+.+++|+.|.+.+|.  .....+..+   ..+++|+.|+|+. +.+..     + + .+.. +++|+.|+|+.|.+...
T Consensus       248 ~~~~p~Lr~L~L~~~~--i~~~~~~~la~a~~~~~L~~LdLs~-n~L~d~G~~~L-~~~L~~-l~~L~~L~L~~n~i~d~  322 (362)
T 2ra8_A          248 KDRFPNLKWLGIVDAE--EQNVVVEMFLESDILPQLETMDISA-GVLTDEGARLL-LDHVDK-IKHLKFINMKYNYLSDE  322 (362)
T ss_dssp             TTTCTTCCEEEEESCT--THHHHHHHHHHCSSGGGCSEEECCS-SCCBHHHHHHH-HTTHHH-HTTCSEEECCSBBCCHH
T ss_pred             cCCCCCcCEEeCCCCC--CchHHHHHHHhCccCCCCCEEECCC-CCCChHHHHHH-Hhhccc-CCcceEEECCCCcCCHH
Confidence            1346788888888876  433333222   3467888888876 44443     2 2 2334 68899999998887554


Q ss_pred             CcccccC-CCCCCeEEEeccc
Q 037494          354 PMPMLER-LPRLQVMKLKRNS  373 (394)
Q Consensus       354 ~~~~l~~-l~~L~~L~l~~n~  373 (394)
                      ....+.. +  ...++++.+.
T Consensus       323 ~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          323 MKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             HHHHHHHHC--CSEEECCSBC
T ss_pred             HHHHHHHHc--CCEEEecCCc
Confidence            4444443 3  4567776654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.23  E-value=1.2e-06  Score=81.55  Aligned_cols=110  Identities=14%  Similarity=-0.022  Sum_probs=69.0

Q ss_pred             CCCCCccEEEEecCCCcc-----chhcchhHHhccCCceeEEEcCCCCCCCCcccccCcccccEEecCCCCCcc-ccccc
Q 037494          141 QSDMYLQSFLNHSSESDH-----LALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKC-LPLLI  214 (394)
Q Consensus       141 ~~~~~lr~L~l~~~~~~~-----~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~-lp~~l  214 (394)
                      ..+++||+|.+.+.....     .....+..++..+++|+.|.++++.-..++. +. +.+|+.|++..+.+.. ....+
T Consensus       136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l  213 (362)
T 2ra8_A          136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-KP-RPNLKSLEIISGGLPDSVVEDI  213 (362)
T ss_dssp             HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-CB-CTTCSEEEEECSBCCHHHHHHH
T ss_pred             hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-cc-CCCCcEEEEecCCCChHHHHHH
Confidence            457899999986543211     0012356777899999999999884234544 43 8899999999887652 11233


Q ss_pred             c--CCCCCcEEEcc-cCC-------ccccchhh--ccCccCcEEEeeCCCC
Q 037494          215 C--TLLNLETLEMP-AGY-------IDHSPEGI--WMMQKLMHLNFDSITL  253 (394)
Q Consensus       215 ~--~l~~L~~L~l~-~~~-------l~~lp~~i--~~l~~L~~L~l~~~~~  253 (394)
                      +  .+++|++|+|+ +..       +..+...+  ..+++|++|++. +|.
T Consensus       214 ~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~-~~~  263 (362)
T 2ra8_A          214 LGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIV-DAE  263 (362)
T ss_dssp             HHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEE-SCT
T ss_pred             HHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCC-CCC
Confidence            3  78999999986 311       11111111  246677777776 544

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.00  E-value=6.1e-06  Score=69.15  Aligned_cols=111  Identities=13%  Similarity=0.091  Sum_probs=66.4

Q ss_pred             CCCCCccEEEEecC-CCccchhcchhHHhccCCceeEEEcCCCCCCC-----CcccccCcccccEEecCCCCCcc-----
Q 037494          141 QSDMYLQSFLNHSS-ESDHLALIDCENFCENFKYLRVLNWGSAVLDQ-----FPPGLENLFLLKYLQLNIPTLKC-----  209 (394)
Q Consensus       141 ~~~~~lr~L~l~~~-~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~-----lp~~i~~l~~L~~L~l~~~~l~~-----  209 (394)
                      ...+.|++|.+.++ ....-....+...+...+.|++|++++|.+..     +...+...+.|++|+|++|.+..     
T Consensus        33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~  112 (185)
T 1io0_A           33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA  112 (185)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence            45667777777776 55421112233333666777777777777652     33444555677777777777653     


Q ss_pred             ccccccCCCCCcEEEc--c-cCCccc-----cchhhccCccCcEEEeeCCCC
Q 037494          210 LPLLICTLLNLETLEM--P-AGYIDH-----SPEGIWMMQKLMHLNFDSITL  253 (394)
Q Consensus       210 lp~~l~~l~~L~~L~l--~-~~~l~~-----lp~~i~~l~~L~~L~l~~~~~  253 (394)
                      +...+...++|++|++  + | .+..     +...+...++|++|+++ +|.
T Consensus       113 l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~-~n~  162 (185)
T 1io0_A          113 LVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYH-FTQ  162 (185)
T ss_dssp             HHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECC-CSS
T ss_pred             HHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEecc-CCC
Confidence            4455666667777777  5 5 4432     33345555677777777 554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.96  E-value=0.00033  Score=65.89  Aligned_cols=83  Identities=8%  Similarity=0.175  Sum_probs=52.9

Q ss_pred             cCCCCCCCeEEEeecCCccccchh-hhhcCCCCCcEEEecCCCCCCccCC-CCCCCCCCceEEEEecccCCCCCcccccC
Q 037494          283 LSRLPTVQTLRISGDLSHYHSGVS-KSLCELHKLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLER  360 (394)
Q Consensus       283 l~~l~~L~~L~l~~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~  360 (394)
                      +..++.|+.+.+..    ....++ ..+..+.+|+.+.|.  .+++.+.. .|.. +.+|+.+.|..+ ++......+.+
T Consensus       284 F~~c~~L~~i~l~~----~i~~I~~~aF~~c~~L~~i~lp--~~v~~I~~~aF~~-C~~L~~i~ip~s-v~~I~~~aF~~  355 (394)
T 4gt6_A          284 FMNCPALQDIEFSS----RITELPESVFAGCISLKSIDIP--EGITQILDDAFAG-CEQLERIAIPSS-VTKIPESAFSN  355 (394)
T ss_dssp             TTTCTTCCEEECCT----TCCEECTTTTTTCTTCCEEECC--TTCCEECTTTTTT-CTTCCEEEECTT-CCBCCGGGGTT
T ss_pred             cccccccccccCCC----cccccCceeecCCCCcCEEEeC--CcccEehHhHhhC-CCCCCEEEECcc-cCEEhHhHhhC
Confidence            33445555555532    122222 356667778877775  34666623 6777 889999998654 44555567888


Q ss_pred             CCCCCeEEEeccc
Q 037494          361 LPRLQVMKLKRNS  373 (394)
Q Consensus       361 l~~L~~L~l~~n~  373 (394)
                      +++|+.+.+.++.
T Consensus       356 C~~L~~i~~~~~~  368 (394)
T 4gt6_A          356 CTALNNIEYSGSR  368 (394)
T ss_dssp             CTTCCEEEESSCH
T ss_pred             CCCCCEEEECCce
Confidence            9999999986653

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.85  E-value=3.9e-06  Score=70.33  Aligned_cols=116  Identities=12%  Similarity=0.061  Sum_probs=75.5

Q ss_pred             hhHHhccCCceeEEEcCCC-CCC-----CCcccccCcccccEEecCCCCCcc-----ccccccCCCCCcEEEcc-cCCcc
Q 037494          164 CENFCENFKYLRVLNWGSA-VLD-----QFPPGLENLFLLKYLQLNIPTLKC-----LPLLICTLLNLETLEMP-AGYID  231 (394)
Q Consensus       164 l~~~~~~l~~L~~L~l~~~-~~~-----~lp~~i~~l~~L~~L~l~~~~l~~-----lp~~l~~l~~L~~L~l~-~~~l~  231 (394)
                      +..++...+.|++|++++| .+.     .+...+...++|++|+|++|.+..     +...+...++|++|+|+ | .+.
T Consensus        28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~  106 (185)
T 1io0_A           28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FIS  106 (185)
T ss_dssp             HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCC
T ss_pred             HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC-cCC
Confidence            3455588899999999998 776     344566677888999999888762     44455566778888888 7 664


Q ss_pred             c-----cchhhccCccCcEEEe--eCCCCCCCCCCCCCCCCcCceeCccccCCCcchhcCCCCCCCeEEEeecC
Q 037494          232 H-----SPEGIWMMQKLMHLNF--DSITLPAPPKNYSSSLKNLIFISALHPSSCTPDILSRLPTVQTLRISGDL  298 (394)
Q Consensus       232 ~-----lp~~i~~l~~L~~L~l--~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~  298 (394)
                      .     +...+...++|++|++  + +|.+..-  +.               ......+...+.|+.|++++|.
T Consensus       107 ~~g~~~l~~~L~~n~~L~~L~L~~~-~N~i~~~--g~---------------~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          107 GSGILALVEALQSNTSLIELRIDNQ-SQPLGNN--VE---------------MEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             HHHHHHHHHGGGGCSSCCEEECCCC-SSCCCHH--HH---------------HHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHHHHHHHhCCCceEEEecCC-CCCCCHH--HH---------------HHHHHHHHhCCCcCEEeccCCC
Confidence            3     4455666677777777  4 4432210  00               1123344455677777877775

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.82  E-value=0.0001  Score=69.31  Aligned_cols=82  Identities=10%  Similarity=0.068  Sum_probs=56.1

Q ss_pred             cCCCCCCCeEEEeecCCccccch-hhhhcCCCCCcEEEecCCCCCCccCC-CCCCCCCCceEEEEecccCCCCCcccccC
Q 037494          283 LSRLPTVQTLRISGDLSHYHSGV-SKSLCELHKLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLER  360 (394)
Q Consensus       283 l~~l~~L~~L~l~~~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~  360 (394)
                      +..+.+|+.+.+..+    ...+ ..++..+.+|+.++|.  .+++.+.. .|.. +.+|+.+++..+ ++.....++.+
T Consensus       293 F~~~~~L~~i~l~~~----i~~I~~~aF~~c~~L~~i~lp--~~v~~I~~~aF~~-c~~L~~i~lp~~-l~~I~~~aF~~  364 (394)
T 4fs7_A          293 FYGCSSLTEVKLLDS----VKFIGEEAFESCTSLVSIDLP--YLVEEIGKRSFRG-CTSLSNINFPLS-LRKIGANAFQG  364 (394)
T ss_dssp             TTTCTTCCEEEECTT----CCEECTTTTTTCTTCCEECCC--TTCCEECTTTTTT-CTTCCEECCCTT-CCEECTTTBTT
T ss_pred             ccccccccccccccc----cceechhhhcCCCCCCEEEeC--CcccEEhHHhccC-CCCCCEEEECcc-ccEehHHHhhC
Confidence            445667777766432    2222 2456777888888885  35777733 7777 899999999765 44455567889


Q ss_pred             CCCCCeEEEecc
Q 037494          361 LPRLQVMKLKRN  372 (394)
Q Consensus       361 l~~L~~L~l~~n  372 (394)
                      +++|+.+.+..+
T Consensus       365 C~~L~~i~lp~~  376 (394)
T 4fs7_A          365 CINLKKVELPKR  376 (394)
T ss_dssp             CTTCCEEEEEGG
T ss_pred             CCCCCEEEECCC
Confidence            999999999544

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.81  E-value=6.3e-06  Score=67.86  Aligned_cols=33  Identities=12%  Similarity=0.296  Sum_probs=15.8

Q ss_pred             CceEEEEeccc-CCCCCcccccCCCCCCeEEEec
Q 037494          339 SLIQLSLSNTE-LMEDPMPMLERLPRLQVMKLKR  371 (394)
Q Consensus       339 ~L~~L~L~~~~-l~~~~~~~l~~l~~L~~L~l~~  371 (394)
                      +|++|+|++|. ++...+..+.++++|++|+|++
T Consensus       115 ~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~  148 (176)
T 3e4g_A          115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSD  148 (176)
T ss_dssp             HCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEES
T ss_pred             CCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCC
Confidence            35555555552 4333344444555555555544

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.71  E-value=2.8e-05  Score=68.79  Aligned_cols=79  Identities=23%  Similarity=0.103  Sum_probs=53.4

Q ss_pred             ccCCceeEEEcCCCCCCCCc---ccccCcccccEEecCCCCCccccccccCCC--CCcEEEcc-cCCcc-ccc-------
Q 037494          169 ENFKYLRVLNWGSAVLDQFP---PGLENLFLLKYLQLNIPTLKCLPLLICTLL--NLETLEMP-AGYID-HSP-------  234 (394)
Q Consensus       169 ~~l~~L~~L~l~~~~~~~lp---~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~--~L~~L~l~-~~~l~-~lp-------  234 (394)
                      .++++|++|+|++|.+..++   ..++.+++|+.|+|++|.++.+. .+..+.  +|++|+++ | .+. .+|       
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~N-pl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGN-SLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTS-TTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCC-cCccccCcchhHHH
Confidence            56788888888888877543   55567888888888888877662 344444  78888888 6 443 333       


Q ss_pred             hhhccCccCcEEEee
Q 037494          235 EGIWMMQKLMHLNFD  249 (394)
Q Consensus       235 ~~i~~l~~L~~L~l~  249 (394)
                      ..+..+++|+.|+-.
T Consensus       245 ~il~~~P~L~~LDg~  259 (267)
T 3rw6_A          245 AIRERFPKLLRLDGH  259 (267)
T ss_dssp             HHHHHCTTCCEESSC
T ss_pred             HHHHHCcccCeECCc
Confidence            135667777777643

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.70  E-value=0.0003  Score=66.16  Aligned_cols=59  Identities=14%  Similarity=0.066  Sum_probs=37.4

Q ss_pred             hcCCCCCcEEEecCCCCCCccCC-CCCCCCCCceEEEEecccCCCCCcccccCCCCCCeEEEec
Q 037494          309 LCELHKLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKR  371 (394)
Q Consensus       309 l~~~~~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~  371 (394)
                      +..+.+|+.+.+.  ++++.+.. .+.. +.+|+.++|..+ ++.....++.++.+|+.+.+..
T Consensus       293 F~~~~~L~~i~l~--~~i~~I~~~aF~~-c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~  352 (394)
T 4fs7_A          293 FYGCSSLTEVKLL--DSVKFIGEEAFES-CTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPL  352 (394)
T ss_dssp             TTTCTTCCEEEEC--TTCCEECTTTTTT-CTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCT
T ss_pred             ccccccccccccc--cccceechhhhcC-CCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECc
Confidence            3344556666554  34555522 6666 888888888654 4444445677888898888843

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.58  E-value=4.2e-05  Score=62.90  Aligned_cols=34  Identities=6%  Similarity=0.061  Sum_probs=16.4

Q ss_pred             CCCcEEEcc-cCCccccc-hhhccCccCcEEEeeCCCC
Q 037494          218 LNLETLEMP-AGYIDHSP-EGIWMMQKLMHLNFDSITL  253 (394)
Q Consensus       218 ~~L~~L~l~-~~~l~~lp-~~i~~l~~L~~L~l~~~~~  253 (394)
                      .+|+.||++ | .+...- ..+..+++|++|+++ +|.
T Consensus        61 ~~L~~LDLs~~-~Itd~GL~~L~~~~~L~~L~L~-~C~   96 (176)
T 3e4g_A           61 YKIQAIDATDS-CIMSIGFDHMEGLQYVEKIRLC-KCH   96 (176)
T ss_dssp             CCEEEEEEESC-CCCGGGGGGGTTCSCCCEEEEE-SCT
T ss_pred             ceEeEEeCcCC-CccHHHHHHhcCCCCCCEEEeC-CCC
Confidence            346666666 5 333211 224455555555555 543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.22  E-value=0.00018  Score=63.52  Aligned_cols=79  Identities=19%  Similarity=0.164  Sum_probs=49.9

Q ss_pred             cCcccccEEecCCCCCcccc---ccccCCCCCcEEEcc-cCCccccchhhccCc--cCcEEEeeCCCCCC-CCCC-----
Q 037494          192 ENLFLLKYLQLNIPTLKCLP---LLICTLLNLETLEMP-AGYIDHSPEGIWMMQ--KLMHLNFDSITLPA-PPKN-----  259 (394)
Q Consensus       192 ~~l~~L~~L~l~~~~l~~lp---~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~--~L~~L~l~~~~~~~-~~p~-----  259 (394)
                      .++++|+.|+|++|.+..++   ..++.+++|++|+|+ | .+..+. .+..+.  +|+.|+++ +|++. .+|.     
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~-~l~~l~~l~L~~L~L~-~Npl~~~~~~~~~y~  243 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSER-ELDKIKGLKLEELWLD-GNSLCDTFRDQSTYI  243 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGG-GGGGGTTSCCSEEECT-TSTTGGGCSSHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCch-hhhhcccCCcceEEcc-CCcCccccCcchhHH
Confidence            35677888888888776543   445577888888888 6 666652 344444  78888887 77743 3331     


Q ss_pred             --CCCCCCcCceeCcc
Q 037494          260 --YSSSLKNLIFISAL  273 (394)
Q Consensus       260 --~l~~l~~L~~L~~~  273 (394)
                        .+..+++|+.|+..
T Consensus       244 ~~il~~~P~L~~LDg~  259 (267)
T 3rw6_A          244 SAIRERFPKLLRLDGH  259 (267)
T ss_dssp             HHHHHHCTTCCEESSC
T ss_pred             HHHHHHCcccCeECCc
Confidence              13455666666543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.16  E-value=0.015  Score=53.88  Aligned_cols=31  Identities=13%  Similarity=-0.021  Sum_probs=17.9

Q ss_pred             CceEEEEEEeCCcchhhcc--CCCCCccEEEEec
Q 037494          122 ATVKRCFILEDLIEFISLE--QSDMYLQSFLNHS  153 (394)
Q Consensus       122 ~~~r~L~l~~~~~~~~~~~--~~~~~lr~L~l~~  153 (394)
                      .+++.+.+. +....+...  ..+.+|+++.+-.
T Consensus        46 ~~i~~v~ip-~~vt~Ig~~aF~~C~~L~~I~lp~   78 (379)
T 4h09_A           46 DRISEVRVN-SGITSIGEANFNSCYNMTKVTVAS   78 (379)
T ss_dssp             GGCSEEEEC-TTEEEECTTTTTTCTTCCEEEECT
T ss_pred             cCCEEEEeC-CCccChHHHHhhCCCCCCEEEeCC
Confidence            345666666 445554443  5667777776643

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.89  E-value=0.015  Score=54.35  Aligned_cols=126  Identities=10%  Similarity=0.054  Sum_probs=74.6

Q ss_pred             hccCccCcEEEeeCCCCCCCCCCCCCCCCcCceeCccccCC-CcchhcCCCCCCCeEEEeecCCccccch-hhhhcCCCC
Q 037494          237 IWMMQKLMHLNFDSITLPAPPKNYSSSLKNLIFISALHPSS-CTPDILSRLPTVQTLRISGDLSHYHSGV-SKSLCELHK  314 (394)
Q Consensus       237 i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~l~~~~~  314 (394)
                      +....+|+.+.+. .....--...+.++++|+.+.+...-. -....+..+.+|+.+.+..+    ...+ ..+|..+.+
T Consensus       261 F~~c~~L~~i~lp-~~~~~I~~~aF~~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~----v~~I~~~aF~~C~~  335 (394)
T 4gt6_A          261 FDSCAYLASVKMP-DSVVSIGTGAFMNCPALQDIEFSSRITELPESVFAGCISLKSIDIPEG----ITQILDDAFAGCEQ  335 (394)
T ss_dssp             TTTCSSCCEEECC-TTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTT----CCEECTTTTTTCTT
T ss_pred             eeecccccEEecc-cccceecCcccccccccccccCCCcccccCceeecCCCCcCEEEeCCc----ccEehHhHhhCCCC
Confidence            3445666766665 332111122355667777776643221 12234677889999988543    2223 357888999


Q ss_pred             CcEEEecCCCCCCccCC-CCCCCCCCceEEEEecccCCCCCcccccCCCCCCeEEEeccc
Q 037494          315 LECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNS  373 (394)
Q Consensus       315 L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~  373 (394)
                      |+.+.|.  .+++.+.. .|.. +++|+.+++.++...   ...+....+|+.+.+..+.
T Consensus       336 L~~i~ip--~sv~~I~~~aF~~-C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~  389 (394)
T 4gt6_A          336 LERIAIP--SSVTKIPESAFSN-CTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGS  389 (394)
T ss_dssp             CCEEEEC--TTCCBCCGGGGTT-CTTCCEEEESSCHHH---HHTCBCCCCC---------
T ss_pred             CCEEEEC--cccCEEhHhHhhC-CCCCCEEEECCceee---hhhhhccCCCCEEEeCCCC
Confidence            9999995  45888822 7788 999999999987532   2456677888888885443

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.13  E-value=0.22  Score=45.90  Aligned_cols=59  Identities=14%  Similarity=0.117  Sum_probs=43.1

Q ss_pred             hhcCCCCCcEEEecCCCCCCccCC--CCCCCCCCceEEEEecccCCCCCcccccCCCCCCeEEEe
Q 037494          308 SLCELHKLECLKLVNGSKLSRMVL--SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLK  370 (394)
Q Consensus       308 ~l~~~~~L~~L~l~~~~~L~~L~p--~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~  370 (394)
                      .+..+..|+.+.+.  .++..+ +  .+.. +++|+.+.+.++.++......+.++.+|+.+.+.
T Consensus       258 aF~~~~~l~~i~l~--~~i~~i-~~~aF~~-c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp  318 (379)
T 4h09_A          258 LLQNCTALKTLNFY--AKVKTV-PYLLCSG-CSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLP  318 (379)
T ss_dssp             TTTTCTTCCEEEEC--CCCSEE-CTTTTTT-CTTCCEEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred             ccceeehhcccccc--ccceec-ccccccc-ccccccccccccccceehhhhhcCCCCCCEEEcC
Confidence            44555666666664  356666 4  5666 8999999998887765556678899999999983

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.34  E-value=0.019  Score=44.48  Aligned_cols=35  Identities=29%  Similarity=0.413  Sum_probs=18.3

Q ss_pred             CCceEEEEecccCCCCCcccccCCCCCCeEEEecc
Q 037494          338 PSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRN  372 (394)
Q Consensus       338 ~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n  372 (394)
                      ++|+.|+|++|+++..+...+..+++|+.|+|++|
T Consensus        31 ~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   65 (130)
T 3rfe_A           31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN   65 (130)
T ss_dssp             TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred             cCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence            34555555555554444444555555555555544

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=94.32  E-value=0.072  Score=41.17  Aligned_cols=49  Identities=22%  Similarity=0.246  Sum_probs=25.6

Q ss_pred             EEEcCCCCCC--CCcccccCcccccEEecCCCCCcccccc-ccCCCCCcEEEcc
Q 037494          176 VLNWGSAVLD--QFPPGLENLFLLKYLQLNIPTLKCLPLL-ICTLLNLETLEMP  226 (394)
Q Consensus       176 ~L~l~~~~~~--~lp~~i~~l~~L~~L~l~~~~l~~lp~~-l~~l~~L~~L~l~  226 (394)
                      +++.++++++  .+|..+.  .+|++|+|++|.|+.+|.. +..+++|++|+|.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   63 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLG   63 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECC
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEec
Confidence            4555555555  5554332  2455566666665555543 3345555555555

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=93.98  E-value=0.062  Score=44.79  Aligned_cols=109  Identities=10%  Similarity=0.026  Sum_probs=56.8

Q ss_pred             CCCCCccEEEEecC-CCccchhcchhHHhccCCceeEEEcCCCCCC-----CCcccccCcccccEEecCCCCCc-----c
Q 037494          141 QSDMYLQSFLNHSS-ESDHLALIDCENFCENFKYLRVLNWGSAVLD-----QFPPGLENLFLLKYLQLNIPTLK-----C  209 (394)
Q Consensus       141 ~~~~~lr~L~l~~~-~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~-----~lp~~i~~l~~L~~L~l~~~~l~-----~  209 (394)
                      ..-+.|+.|.+.++ .+..--...+-..+..-+.|+.|+|++|.+.     .+-+.+..-+.|+.|+|++|.|.     .
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a  117 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR  117 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence            34456667776654 3331111122222356667777777777765     22334444566777777777665     2


Q ss_pred             ccccccCCCCCcEEEcc-cC--Ccc-----ccchhhccCccCcEEEee
Q 037494          210 LPLLICTLLNLETLEMP-AG--YID-----HSPEGIWMMQKLMHLNFD  249 (394)
Q Consensus       210 lp~~l~~l~~L~~L~l~-~~--~l~-----~lp~~i~~l~~L~~L~l~  249 (394)
                      +-+.+..-..|++|+|+ +.  .+.     .+...+..-+.|..|+++
T Consensus       118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~  165 (197)
T 1pgv_A          118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGIS  165 (197)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred             HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEecc
Confidence            33344445557777776 41  111     122334445566666665

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=91.85  E-value=0.14  Score=42.58  Aligned_cols=86  Identities=15%  Similarity=0.125  Sum_probs=55.1

Q ss_pred             chhHHhccCCceeEEEcCCC-CCC-----CCcccccCcccccEEecCCCCCc-----cccccccCCCCCcEEEcc-cCCc
Q 037494          163 DCENFCENFKYLRVLNWGSA-VLD-----QFPPGLENLFLLKYLQLNIPTLK-----CLPLLICTLLNLETLEMP-AGYI  230 (394)
Q Consensus       163 ~l~~~~~~l~~L~~L~l~~~-~~~-----~lp~~i~~l~~L~~L~l~~~~l~-----~lp~~l~~l~~L~~L~l~-~~~l  230 (394)
                      .+..+...-+.|+.|+|+++ .+.     .+-+.+..-+.|+.|+|++|.+.     .+-+.+..-..|++|+|+ | .+
T Consensus        32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N-~I  110 (197)
T 1pgv_A           32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN-FL  110 (197)
T ss_dssp             HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS-BC
T ss_pred             HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC-cC
Confidence            34445567788899999875 665     23455666678888888888876     233444455678888888 6 55


Q ss_pred             cc-----cchhhccCccCcEEEee
Q 037494          231 DH-----SPEGIWMMQKLMHLNFD  249 (394)
Q Consensus       231 ~~-----lp~~i~~l~~L~~L~l~  249 (394)
                      ..     +-..+..-+.|+.|+++
T Consensus       111 g~~Ga~ala~aL~~N~tL~~L~L~  134 (197)
T 1pgv_A          111 TPELLARLLRSTLVTQSIVEFKAD  134 (197)
T ss_dssp             CHHHHHHHHHHTTTTCCCSEEECC
T ss_pred             CHHHHHHHHHHHhhCCceeEEECC
Confidence            42     22334445567777766

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	394
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.84
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.8
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.78
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.76
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.76
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.75
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.74
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.74
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.72
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.71
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.7
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.63
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.63
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.52
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.52
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.47
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.45
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.43
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.4
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.39
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.37
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.34
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.28
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.2
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.16
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.15
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.06
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.95
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.86
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.85
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.77
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.77
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.6
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.7
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.62
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.82
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.43
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	95.98
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	93.97

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.84  E-value=1.3e-21  Score=178.30  Aligned_cols=226  Identities=17%  Similarity=0.184  Sum_probs=167.4

Q ss_pred             CCccEEEEecCCCccchhcchhHHhccCCceeEEEcCC-CCCC-CCcccccCcccccEEecCCCCCcccc-ccccCCCCC
Q 037494          144 MYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGS-AVLD-QFPPGLENLFLLKYLQLNIPTLKCLP-LLICTLLNL  220 (394)
Q Consensus       144 ~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~-~~~~-~lp~~i~~l~~L~~L~l~~~~l~~lp-~~l~~l~~L  220 (394)
                      .+++.|.+.++....  ...+|+.+.++++|++|++++ |.+. .+|++++++++|++|++++|.+..++ ..+..+.+|
T Consensus        50 ~~v~~L~L~~~~l~g--~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L  127 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPK--PYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL  127 (313)
T ss_dssp             CCEEEEEEECCCCSS--CEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred             EEEEEEECCCCCCCC--CCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhh
Confidence            467888888876652  123444448899999999986 6666 78888999999999999999887654 457788889


Q ss_pred             cEEEcc-cCCccccchhhccCccCcEEEeeCCCC-CCCCCCCCCCCCcC-ceeCccccC--CCcchhcCCCCCCCeEEEe
Q 037494          221 ETLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITL-PAPPKNYSSSLKNL-IFISALHPS--SCTPDILSRLPTVQTLRIS  295 (394)
Q Consensus       221 ~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~-~~~~p~~l~~l~~L-~~L~~~~~~--~~~~~~l~~l~~L~~L~l~  295 (394)
                      ++++++ |.....+|..++.+++|++++++ +|. ...+|..++.+.++ +.+....+.  +..+..++.+..+ .+++.
T Consensus       128 ~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~-~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~  205 (313)
T d1ogqa_         128 VTLDFSYNALSGTLPPSISSLPNLVGITFD-GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLS  205 (313)
T ss_dssp             CEEECCSSEEESCCCGGGGGCTTCCEEECC-SSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECC
T ss_pred             cccccccccccccCchhhccCcccceeecc-ccccccccccccccccccccccccccccccccccccccccccc-ccccc
Confidence            999998 75566778889999999999998 887 44677777777765 666666655  4455566655433 56666


Q ss_pred             ecCCccccchhhhhcCCCCCcEEEecCCCCCCccCC-CCCCCCCCceEEEEecccCCCCCcccccCCCCCCeEEEecccc
Q 037494          296 GDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSY  374 (394)
Q Consensus       296 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~~  374 (394)
                      .+.  .....|..+..+++|+.+++.+ .++... + .+.. +++|+.|+|++|+++...++.++++++|++|+|++|.+
T Consensus       206 ~~~--~~~~~~~~~~~~~~l~~l~~~~-~~l~~~-~~~~~~-~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l  280 (313)
T d1ogqa_         206 RNM--LEGDASVLFGSDKNTQKIHLAK-NSLAFD-LGKVGL-SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL  280 (313)
T ss_dssp             SSE--EEECCGGGCCTTSCCSEEECCS-SEECCB-GGGCCC-CTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEE
T ss_pred             ccc--cccccccccccccccccccccc-cccccc-cccccc-ccccccccCccCeecccCChHHhCCCCCCEEECcCCcc
Confidence            665  5566777777888888888877 444433 4 6666 78888888888888766677788888888888888887


Q ss_pred             cCce
Q 037494          375 FGRK  378 (394)
Q Consensus       375 ~~~~  378 (394)
                      +|..
T Consensus       281 ~g~i  284 (313)
T d1ogqa_         281 CGEI  284 (313)
T ss_dssp             EEEC
T ss_pred             cccC
Confidence            7643

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=7.6e-19  Score=155.91  Aligned_cols=186  Identities=20%  Similarity=0.129  Sum_probs=81.9

Q ss_pred             EEcCCCCCCCCcccccCcccccEEecCCCCCccccc-cccCCCCCcEEEcc-cCCccccchhhccCccCcEEEeeCCCCC
Q 037494          177 LNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPL-LICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITLP  254 (394)
Q Consensus       177 L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~~  254 (394)
                      .+.++++++.+|+.+.  +++++|+|++|.++.+|. .+.++++|++|+++ | .+..+|. ++.+++|++|+++ +|.+
T Consensus        15 v~C~~~~L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N-~l~~l~~-~~~l~~L~~L~Ls-~N~l   89 (266)
T d1p9ag_          15 VNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQV-DGTLPVLGTLDLS-HNQL   89 (266)
T ss_dssp             EECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEEC-CSCCTTCCEEECC-SSCC
T ss_pred             EEccCCCCCeeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccc-ccccccc-ccccccccccccc-cccc
Confidence            3444444444444332  244445555554444442 24444455555554 4 4444442 2344445555554 4444


Q ss_pred             CCCCCCCCCCCcCceeCccccC--CCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCccCC-
Q 037494          255 APPKNYSSSLKNLIFISALHPS--SCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVL-  331 (394)
Q Consensus       255 ~~~p~~l~~l~~L~~L~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p-  331 (394)
                      ...+..+..+++|+.|++..+.  ......+..+.+++.|.+.++.  ....-+..+..+++|+.+++++ +++..+.| 
T Consensus        90 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~--l~~l~~~~~~~l~~l~~l~l~~-N~l~~~~~~  166 (266)
T d1p9ag_          90 QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE--LKTLPPGLLTPTPKLEKLSLAN-NNLTELPAG  166 (266)
T ss_dssp             SSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC--CCCCCTTTTTTCTTCCEEECTT-SCCSCCCTT
T ss_pred             cccccccccccccccccccccccceeeccccccccccccccccccc--cceeccccccccccchhccccc-ccccccCcc
Confidence            4444444444445554444443  2222333444444555554443  2111122333444555555544 34444412 


Q ss_pred             CCCCCCCCceEEEEecccCCCCCcccccCCCCCCeEEEecc
Q 037494          332 SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRN  372 (394)
Q Consensus       332 ~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n  372 (394)
                      .+.. +++|++|+|++|+++. .++.+..+++|+.|+|++|
T Consensus       167 ~~~~-l~~L~~L~Ls~N~L~~-lp~~~~~~~~L~~L~L~~N  205 (266)
T d1p9ag_         167 LLNG-LENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGN  205 (266)
T ss_dssp             TTTT-CTTCCEEECCSSCCCC-CCTTTTTTCCCSEEECCSC
T ss_pred             cccc-ccccceeecccCCCcc-cChhHCCCCCCCEEEecCC
Confidence            3444 4555555555555432 2223334455555555444

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.78  E-value=1.6e-18  Score=161.60  Aligned_cols=252  Identities=17%  Similarity=0.128  Sum_probs=159.3

Q ss_pred             CceEEEEEEeCCcchhhccCCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCcccccCcccccEEe
Q 037494          122 ATVKRCFILEDLIEFISLEQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQ  201 (394)
Q Consensus       122 ~~~r~L~l~~~~~~~~~~~~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~  201 (394)
                      .+++.|.+.......+.....+++|++|.+.++...     .++.+ +++++|++|++++|.+..+++ ++.+++|+.|+
T Consensus        44 ~~l~~L~l~~~~I~~l~gl~~L~nL~~L~Ls~N~l~-----~l~~l-~~L~~L~~L~L~~n~i~~i~~-l~~l~~L~~L~  116 (384)
T d2omza2          44 DQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLT-----DITPL-KNLTKLVDILMNNNQIADITP-LANLTNLTGLT  116 (384)
T ss_dssp             TTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCC-----CCGGG-TTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEE
T ss_pred             CCCCEEECCCCCCCCccccccCCCCCEEeCcCCcCC-----CCccc-cCCcccccccccccccccccc-ccccccccccc
Confidence            456667776555555544456777777777777665     34444 777777777777777776654 67777777777


Q ss_pred             cCCCCCcccc----------------------------------------------------------------ccccCC
Q 037494          202 LNIPTLKCLP----------------------------------------------------------------LLICTL  217 (394)
Q Consensus       202 l~~~~l~~lp----------------------------------------------------------------~~l~~l  217 (394)
                      ++++.+..++                                                                .....+
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  196 (384)
T d2omza2         117 LFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKL  196 (384)
T ss_dssp             CCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccc
Confidence            7665443211                                                                112334


Q ss_pred             CCCcEEEcc-cCCccccchhhccCccCcEEEeeCCCCCCCCCCCCCCCCcCceeCccccCCCcchhcCCCCCCCeEEEee
Q 037494          218 LNLETLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITLPAPPKNYSSSLKNLIFISALHPSSCTPDILSRLPTVQTLRISG  296 (394)
Q Consensus       218 ~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~  296 (394)
                      ++++.++++ + .+..+++ .+..++|+.|+++ +|.+..++ .+..+++|+.|.+..+.......++.+++|+.|++++
T Consensus       197 ~~~~~l~l~~n-~i~~~~~-~~~~~~L~~L~l~-~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~  272 (384)
T d2omza2         197 TNLESLIATNN-QISDITP-LGILTNLDELSLN-GNQLKDIG-TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGA  272 (384)
T ss_dssp             TTCSEEECCSS-CCCCCGG-GGGCTTCCEEECC-SSCCCCCG-GGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCS
T ss_pred             cccceeeccCC-ccCCCCc-ccccCCCCEEECC-CCCCCCcc-hhhcccccchhccccCccCCCCcccccccCCEeeccC
Confidence            556666666 5 5555543 3455666666666 66555443 4556666666666665522333455566666666655


Q ss_pred             cCCc-------------------cccchhhhhcCCCCCcEEEecCCCCCCccCCCCCCCCCCceEEEEecccCCCCCccc
Q 037494          297 DLSH-------------------YHSGVSKSLCELHKLECLKLVNGSKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPM  357 (394)
Q Consensus       297 ~~~~-------------------~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p~~~~~l~~L~~L~L~~~~l~~~~~~~  357 (394)
                      +.-.                   .... ...+..+++++.|++++ +++..+ +.+.. +++|++|++++|+++.  ++.
T Consensus       273 ~~l~~~~~~~~~~~l~~l~~~~n~l~~-~~~~~~~~~l~~L~ls~-n~l~~l-~~l~~-l~~L~~L~L~~n~l~~--l~~  346 (384)
T d2omza2         273 NQISNISPLAGLTALTNLELNENQLED-ISPISNLKNLTYLTLYF-NNISDI-SPVSS-LTKLQRLFFANNKVSD--VSS  346 (384)
T ss_dssp             SCCCCCGGGTTCTTCSEEECCSSCCSC-CGGGGGCTTCSEEECCS-SCCSCC-GGGGG-CTTCCEEECCSSCCCC--CGG
T ss_pred             cccCCCCcccccccccccccccccccc-ccccchhcccCeEECCC-CCCCCC-ccccc-CCCCCEEECCCCCCCC--Chh
Confidence            5400                   1111 22355667777888776 566665 44566 8999999999999854  557


Q ss_pred             ccCCCCCCeEEEecccccCceeEEeCCCCCcCCcccC
Q 037494          358 LERLPRLQVMKLKRNSYFGRKLACVGSGGFPELQVLT  394 (394)
Q Consensus       358 l~~l~~L~~L~l~~n~~~~~~~~~~~~~~fp~L~~L~  394 (394)
                      ++++++|++|++++|.+++...    ...+++|+.|+
T Consensus       347 l~~l~~L~~L~l~~N~l~~l~~----l~~l~~L~~L~  379 (384)
T d2omza2         347 LANLTNINWLSAGHNQISDLTP----LANLTRITQLG  379 (384)
T ss_dssp             GGGCTTCCEEECCSSCCCBCGG----GTTCTTCSEEE
T ss_pred             HcCCCCCCEEECCCCcCCCChh----hccCCCCCEee
Confidence            8999999999999998876541    35688888763

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.76  E-value=2.8e-19  Score=162.64  Aligned_cols=241  Identities=15%  Similarity=0.087  Sum_probs=189.5

Q ss_pred             CCceEEEEEEeCCcc---hhhcc-CCCCCccEEEEec-CCCccchhcchhHHhccCCceeEEEcCCCCCCCC-cccccCc
Q 037494          121 LATVKRCFILEDLIE---FISLE-QSDMYLQSFLNHS-SESDHLALIDCENFCENFKYLRVLNWGSAVLDQF-PPGLENL  194 (394)
Q Consensus       121 ~~~~r~L~l~~~~~~---~~~~~-~~~~~lr~L~l~~-~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l  194 (394)
                      ..++..|.+.++...   .+|.. ..+++|+.|.+.+ +...+    .+|+.+.++++|++|++++|.+..+ +..+..+
T Consensus        49 ~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g----~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~  124 (313)
T d1ogqa_          49 TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG----PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI  124 (313)
T ss_dssp             CCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEES----CCCGGGGGCTTCSEEEEEEECCEEECCGGGGGC
T ss_pred             cEEEEEEECCCCCCCCCCCCChHHhcCcccccccccccccccc----ccccccccccccchhhhccccccccccccccch
Confidence            346888999865444   34444 7899999999987 44432    4555559999999999999998854 5668899


Q ss_pred             ccccEEecCCCCCc-cccccccCCCCCcEEEcc-cCCccccchhhccCccC-cEEEeeCCCCC-CCCCCCCCCCCcCcee
Q 037494          195 FLLKYLQLNIPTLK-CLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKL-MHLNFDSITLP-APPKNYSSSLKNLIFI  270 (394)
Q Consensus       195 ~~L~~L~l~~~~l~-~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L-~~L~l~~~~~~-~~~p~~l~~l~~L~~L  270 (394)
                      .+|+++++++|.+. .+|..++++++|++++++ |.....+|..++.+.++ +.+.++ ++.+ ...|..++.+..+ .+
T Consensus       125 ~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~-~n~l~~~~~~~~~~l~~~-~l  202 (313)
T d1ogqa_         125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTIS-RNRLTGKIPPTFANLNLA-FV  202 (313)
T ss_dssp             TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECC-SSEEEEECCGGGGGCCCS-EE
T ss_pred             hhhcccccccccccccCchhhccCcccceeeccccccccccccccccccccccccccc-cccccccccccccccccc-cc
Confidence            99999999998655 688999999999999999 84445889989988887 788888 7773 3445556655443 56


Q ss_pred             CccccC--CCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCC-ccCC-CCCCCCCCceEEEEe
Q 037494          271 SALHPS--SCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLS-RMVL-SEYQFPPSLIQLSLS  346 (394)
Q Consensus       271 ~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~-~L~p-~~~~~l~~L~~L~L~  346 (394)
                      .+..+.  ...+..++.+++++.+.+.++.  ... .+..++.+++|+.|++++ +++. .+ | +++. +++|++|+|+
T Consensus       203 ~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~--l~~-~~~~~~~~~~L~~L~Ls~-N~l~g~i-P~~l~~-L~~L~~L~Ls  276 (313)
T d1ogqa_         203 DLSRNMLEGDASVLFGSDKNTQKIHLAKNS--LAF-DLGKVGLSKNLNGLDLRN-NRIYGTL-PQGLTQ-LKFLHSLNVS  276 (313)
T ss_dssp             ECCSSEEEECCGGGCCTTSCCSEEECCSSE--ECC-BGGGCCCCTTCCEEECCS-SCCEECC-CGGGGG-CTTCCEEECC
T ss_pred             cccccccccccccccccccccccccccccc--ccc-cccccccccccccccCcc-CeecccC-ChHHhC-CCCCCEEECc
Confidence            665555  6677888999999999999885  333 345688899999999998 6676 67 9 9999 9999999999


Q ss_pred             cccCCCCCcccccCCCCCCeEEEecccc
Q 037494          347 NTELMEDPMPMLERLPRLQVMKLKRNSY  374 (394)
Q Consensus       347 ~~~l~~~~~~~l~~l~~L~~L~l~~n~~  374 (394)
                      +|++++. +|.++++++|+.+++++|.+
T Consensus       277 ~N~l~g~-iP~~~~L~~L~~l~l~~N~~  303 (313)
T d1ogqa_         277 FNNLCGE-IPQGGNLQRFDVSAYANNKC  303 (313)
T ss_dssp             SSEEEEE-CCCSTTGGGSCGGGTCSSSE
T ss_pred             CCccccc-CCCcccCCCCCHHHhCCCcc
Confidence            9998643 45678899999999988863

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.76  E-value=1e-17  Score=151.57  Aligned_cols=254  Identities=13%  Similarity=0.020  Sum_probs=168.5

Q ss_pred             CCceEEEEEEeCCcchhhcc--CCCCCccEEEEecCCCccchhcch-hHHhccCCceeEEEcCCCCCCCCcccccCcccc
Q 037494          121 LATVKRCFILEDLIEFISLE--QSDMYLQSFLNHSSESDHLALIDC-ENFCENFKYLRVLNWGSAVLDQFPPGLENLFLL  197 (394)
Q Consensus       121 ~~~~r~L~l~~~~~~~~~~~--~~~~~lr~L~l~~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L  197 (394)
                      +..+++|.+..+....++..  ..+++|+.|.+.++...     .+ +..|..++.|++|++++|.++.+|..+  ...+
T Consensus        30 ~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~-----~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~--~~~l  102 (305)
T d1xkua_          30 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-----KISPGAFAPLVKLERLYLSKNQLKELPEKM--PKTL  102 (305)
T ss_dssp             CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCC-----CBCTTTTTTCTTCCEEECCSSCCSBCCSSC--CTTC
T ss_pred             CCCCCEEECcCCcCCCcChhHhhcccccccccccccccc-----ccchhhhhCCCccCEecccCCccCcCccch--hhhh
Confidence            34556666665555555432  45556666666655554     22 333356666666666666666555432  2355


Q ss_pred             cEEecCCCCCcccccc-ccCCCCCcEEEcc-cCC--ccccchhhccCccCcEEEeeCCCCCCCCCCCCCCCCcCceeCcc
Q 037494          198 KYLQLNIPTLKCLPLL-ICTLLNLETLEMP-AGY--IDHSPEGIWMMQKLMHLNFDSITLPAPPKNYSSSLKNLIFISAL  273 (394)
Q Consensus       198 ~~L~l~~~~l~~lp~~-l~~l~~L~~L~l~-~~~--l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~  273 (394)
                      +.|.+..+.+..++.. +.....+..++.. +..  ....+..+..+++|+.+++. +|....+|..+  +++|+.|++.
T Consensus       103 ~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~-~n~l~~l~~~~--~~~L~~L~l~  179 (305)
T d1xkua_         103 QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA-DTNITTIPQGL--PPSLTELHLD  179 (305)
T ss_dssp             CEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECC-SSCCCSCCSSC--CTTCSEEECT
T ss_pred             hhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccc-cCCccccCccc--CCccCEEECC
Confidence            5566666555555433 2344555566655 311  12223456678899999999 88877777643  6789999988


Q ss_pred             ccC--CCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCccCC-CCCCCCCCceEEEEecccC
Q 037494          274 HPS--SCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTEL  350 (394)
Q Consensus       274 ~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l  350 (394)
                      ++.  ...+..+..++.++.|.++++.  .....+..+..+++|++|+|++ +++..+ | ++.. +++|+.|+|++|++
T Consensus       180 ~n~~~~~~~~~~~~~~~l~~L~~s~n~--l~~~~~~~~~~l~~L~~L~L~~-N~L~~l-p~~l~~-l~~L~~L~Ls~N~i  254 (305)
T d1xkua_         180 GNKITKVDAASLKGLNNLAKLGLSFNS--ISAVDNGSLANTPHLRELHLNN-NKLVKV-PGGLAD-HKYIQVVYLHNNNI  254 (305)
T ss_dssp             TSCCCEECTGGGTTCTTCCEEECCSSC--CCEECTTTGGGSTTCCEEECCS-SCCSSC-CTTTTT-CSSCCEEECCSSCC
T ss_pred             CCcCCCCChhHhhcccccccccccccc--ccccccccccccccceeeeccc-cccccc-cccccc-ccCCCEEECCCCcc
Confidence            877  4455678889999999999886  4444466788899999999998 689999 8 8988 99999999999998


Q ss_pred             CCCCccc------ccCCCCCCeEEEecccccCceeEEeCCCCCcCCcc
Q 037494          351 MEDPMPM------LERLPRLQVMKLKRNSYFGRKLACVGSGGFPELQV  392 (394)
Q Consensus       351 ~~~~~~~------l~~l~~L~~L~l~~n~~~~~~~~~~~~~~fp~L~~  392 (394)
                      +..+...      ...+++|+.|++++|.+....+  . ++.|+.++.
T Consensus       255 ~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~--~-~~~f~~~~~  299 (305)
T d1xkua_         255 SAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEI--Q-PSTFRCVYV  299 (305)
T ss_dssp             CCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGS--C-GGGGTTCCC
T ss_pred             CccChhhccCcchhcccCCCCEEECCCCcCccCcC--C-HhHhccccc
Confidence            7654322      3467889999999887654332  2 556776654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=9e-18  Score=148.85  Aligned_cols=174  Identities=18%  Similarity=0.141  Sum_probs=141.6

Q ss_pred             CceeEEEcCCCCCCCCc-ccccCcccccEEecCCCCCccccccccCCCCCcEEEcc-cCCccccchhhccCccCcEEEee
Q 037494          172 KYLRVLNWGSAVLDQFP-PGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLNFD  249 (394)
Q Consensus       172 ~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~  249 (394)
                      +++++|++++|.++.+| ..+.++++|++|++++|.++.+| ..+.+++|++|+++ | .+...|..+..+++|+.|+++
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~l~  108 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ-VDGTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVS  108 (266)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE-CCSCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEECC
T ss_pred             cCCCEEECcCCcCCCcCHHHhhccccccccccccccccccc-cccccccccccccccc-ccccccccccccccccccccc
Confidence            57889999999998876 56888999999999999998887 45788999999999 8 888888888889999999999


Q ss_pred             CCCCCCCCCC-CCCCCCcCceeCccccC-C-CcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCC
Q 037494          250 SITLPAPPKN-YSSSLKNLIFISALHPS-S-CTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKL  326 (394)
Q Consensus       250 ~~~~~~~~p~-~l~~l~~L~~L~~~~~~-~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L  326 (394)
                       ++....++. .+..+.+++.|.+..+. . ..+..+..+++++.+++++|.  .....+..+..+++|+.|+|++ +++
T Consensus       109 -~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~--l~~~~~~~~~~l~~L~~L~Ls~-N~L  184 (266)
T d1p9ag_         109 -FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN--LTELPAGLLNGLENLDTLLLQE-NSL  184 (266)
T ss_dssp             -SSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC--CSCCCTTTTTTCTTCCEEECCS-SCC
T ss_pred             -ccccceeeccccccccccccccccccccceeccccccccccchhccccccc--ccccCccccccccccceeeccc-CCC
Confidence             888666554 46778889999888877 3 333456778899999999986  4444456678899999999998 779


Q ss_pred             CccCC-CCCCCCCCceEEEEecccCCCC
Q 037494          327 SRMVL-SEYQFPPSLIQLSLSNTELMED  353 (394)
Q Consensus       327 ~~L~p-~~~~~l~~L~~L~L~~~~l~~~  353 (394)
                      +.+ | .+.. +++|+.|+|++|++.+.
T Consensus       185 ~~l-p~~~~~-~~~L~~L~L~~Np~~Cd  210 (266)
T d1p9ag_         185 YTI-PKGFFG-SHLLPFAFLHGNPWLCN  210 (266)
T ss_dssp             CCC-CTTTTT-TCCCSEEECCSCCBCCS
T ss_pred             ccc-ChhHCC-CCCCCEEEecCCCCCCC
Confidence            999 8 7777 89999999999987653

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.8e-17  Score=148.40  Aligned_cols=199  Identities=18%  Similarity=0.181  Sum_probs=158.2

Q ss_pred             CceeEEEcCCCCCCCCc-ccccCcccccEEecCCCCCcccccc-ccCCCCCcEEEcc-cCCccccc-hhhccCccCcEEE
Q 037494          172 KYLRVLNWGSAVLDQFP-PGLENLFLLKYLQLNIPTLKCLPLL-ICTLLNLETLEMP-AGYIDHSP-EGIWMMQKLMHLN  247 (394)
Q Consensus       172 ~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~l~~lp~~-l~~l~~L~~L~l~-~~~l~~lp-~~i~~l~~L~~L~  247 (394)
                      +.+++|++++|.++.+| .++.++++|++|+++++.+..++.. ...+..++.++.. +..+..++ ..+.++++|++|+
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~  111 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEe
Confidence            46789999999998887 4688899999999999988876644 4567888888877 54777775 4678899999999


Q ss_pred             eeCCCCCCCCCC-CCCCCCcCceeCccccC-CCc-chhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCC
Q 037494          248 FDSITLPAPPKN-YSSSLKNLIFISALHPS-SCT-PDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGS  324 (394)
Q Consensus       248 l~~~~~~~~~p~-~l~~l~~L~~L~~~~~~-~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~  324 (394)
                      ++ ++....++. .++..++|+.+.+..+. ... ...+..+++|+.|+++++.  .....+..+..+++|+.+.+++ +
T Consensus       112 l~-~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~--l~~l~~~~f~~l~~L~~l~l~~-N  187 (284)
T d1ozna_         112 LD-RCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR--ISSVPERAFRGLHSLDRLLLHQ-N  187 (284)
T ss_dssp             CT-TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CCEECTTTTTTCTTCCEEECCS-S
T ss_pred             cC-CcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCc--ccccchhhhccccccchhhhhh-c
Confidence            99 888665544 46778889999888877 333 3557788899999999886  4444456778889999999987 6


Q ss_pred             CCCccCC-CCCCCCCCceEEEEecccCCCCCcccccCCCCCCeEEEeccccc
Q 037494          325 KLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYF  375 (394)
Q Consensus       325 ~L~~L~p-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~  375 (394)
                      ++..+.| ++.. +++|+.|++++|++...+...++.+++|++|++++|.+.
T Consensus       188 ~l~~i~~~~f~~-l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         188 RVAHVHPHAFRD-LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             CCCEECTTTTTT-CTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             cccccChhHhhh-hhhcccccccccccccccccccccccccCEEEecCCCCC
Confidence            6777646 8888 899999999999988877778899999999999887654

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=2.5e-17  Score=153.43  Aligned_cols=165  Identities=21%  Similarity=0.208  Sum_probs=105.1

Q ss_pred             ccccEEecCCCCCccccccccCCCCCcEEEcc-cCCccccchhhccCccCcEEEeeCCCCCCCCCCCCCCCCcCceeCcc
Q 037494          195 FLLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITLPAPPKNYSSSLKNLIFISAL  273 (394)
Q Consensus       195 ~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~  273 (394)
                      .+|+.|++++|.++.+| .+..+++|+.|+++ | .+..++. ++.+++|++|+++ ++....+++ +..++.++.+...
T Consensus       219 ~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n-~l~~~~~-~~~~~~L~~L~l~-~~~l~~~~~-~~~~~~l~~l~~~  293 (384)
T d2omza2         219 TNLDELSLNGNQLKDIG-TLASLTNLTDLDLANN-QISNLAP-LSGLTKLTELKLG-ANQISNISP-LAGLTALTNLELN  293 (384)
T ss_dssp             TTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSS-CCCCCGG-GTTCTTCSEEECC-SSCCCCCGG-GTTCTTCSEEECC
T ss_pred             CCCCEEECCCCCCCCcc-hhhcccccchhccccC-ccCCCCc-ccccccCCEeecc-CcccCCCCc-ccccccccccccc
Confidence            34444444444444443 34445555555555 4 4444432 4445555555555 444433332 3444455555554


Q ss_pred             ccCCCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCccCCCCCCCCCCceEEEEecccCCCC
Q 037494          274 HPSSCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVLSEYQFPPSLIQLSLSNTELMED  353 (394)
Q Consensus       274 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p~~~~~l~~L~~L~L~~~~l~~~  353 (394)
                      .+....+..+..+++++.|+++++.  . ..++ .+..+++|++|++++ ++++.+ |.+.. +++|++|++++|+++. 
T Consensus       294 ~n~l~~~~~~~~~~~l~~L~ls~n~--l-~~l~-~l~~l~~L~~L~L~~-n~l~~l-~~l~~-l~~L~~L~l~~N~l~~-  365 (384)
T d2omza2         294 ENQLEDISPISNLKNLTYLTLYFNN--I-SDIS-PVSSLTKLQRLFFAN-NKVSDV-SSLAN-LTNINWLSAGHNQISD-  365 (384)
T ss_dssp             SSCCSCCGGGGGCTTCSEEECCSSC--C-SCCG-GGGGCTTCCEEECCS-SCCCCC-GGGGG-CTTCCEEECCSSCCCB-
T ss_pred             ccccccccccchhcccCeEECCCCC--C-CCCc-ccccCCCCCEEECCC-CCCCCC-hhHcC-CCCCCEEECCCCcCCC-
Confidence            4443334556777888999998885  3 3333 378899999999998 578777 66777 9999999999999854 


Q ss_pred             CcccccCCCCCCeEEEeccc
Q 037494          354 PMPMLERLPRLQVMKLKRNS  373 (394)
Q Consensus       354 ~~~~l~~l~~L~~L~l~~n~  373 (394)
                       ++.++++++|+.|+|++|.
T Consensus       366 -l~~l~~l~~L~~L~L~~Na  384 (384)
T d2omza2         366 -LTPLANLTRITQLGLNDQA  384 (384)
T ss_dssp             -CGGGTTCTTCSEEECCCEE
T ss_pred             -ChhhccCCCCCEeeCCCCc
Confidence             4458999999999998763

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=3.6e-17  Score=141.38  Aligned_cols=187  Identities=20%  Similarity=0.215  Sum_probs=140.7

Q ss_pred             ccCCceeEEEcCCCCCCCCcccccCcccccEEecCCCCCccccccccCCCCCcEEEcc-cCCccccchhhccCccCcEEE
Q 037494          169 ENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLN  247 (394)
Q Consensus       169 ~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~  247 (394)
                      ..+.+|+.|++.+|.+++++ .+.++++|++|++++|.+..++ .+..+++|++++++ | .+..++ ++..+++|+.+.
T Consensus        38 ~~l~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~ls~n~i~~~~-~l~~l~~l~~l~~~~n-~~~~i~-~l~~l~~L~~l~  113 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLA-PLKNLTKITELELSGN-PLKNVS-AIAGLQSIKTLD  113 (227)
T ss_dssp             HHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCG-GGTTCCSCCEEECCSC-CCSCCG-GGTTCTTCCEEE
T ss_pred             HHcCCcCEEECCCCCCCcch-hHhcCCCCcEeecCCceeeccc-cccccccccccccccc-cccccc-cccccccccccc
Confidence            55677888888888888874 5888888888888888888776 47888888888888 7 777765 477888888888


Q ss_pred             eeCCCCCCCCCCCCCCCCcCceeCccccCCCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCC
Q 037494          248 FDSITLPAPPKNYSSSLKNLIFISALHPSSCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLS  327 (394)
Q Consensus       248 l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~  327 (394)
                      ++ ++.....+ .+...+.++.+.+..+.......+..+++|+.|.+.++.  .. .. ..+..+++|+.|++++ +.++
T Consensus       114 l~-~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~--~~-~~-~~l~~l~~L~~L~Ls~-n~l~  186 (227)
T d1h6ua2         114 LT-STQITDVT-PLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQ--VS-DL-TPLANLSKLTTLKADD-NKIS  186 (227)
T ss_dssp             CT-TSCCCCCG-GGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSC--CC-CC-GGGTTCTTCCEEECCS-SCCC
T ss_pred             cc-cccccccc-hhccccchhhhhchhhhhchhhhhccccccccccccccc--cc-cc-hhhcccccceecccCC-CccC
Confidence            88 77644432 345666777777766664444556777888888888875  22 22 2367888999999988 4677


Q ss_pred             ccCCCCCCCCCCceEEEEecccCCCCCcccccCCCCCCeEEEe
Q 037494          328 RMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLK  370 (394)
Q Consensus       328 ~L~p~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~  370 (394)
                      .+ |.+.. +++|++|+|++|+++.  ++.++++++|+.|+++
T Consensus       187 ~l-~~l~~-l~~L~~L~Ls~N~lt~--i~~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         187 DI-SPLAS-LPNLIEVHLKNNQISD--VSPLANTSNLFIVTLT  225 (227)
T ss_dssp             CC-GGGGG-CTTCCEEECTTSCCCB--CGGGTTCTTCCEEEEE
T ss_pred             CC-hhhcC-CCCCCEEECcCCcCCC--CcccccCCCCCEEEee
Confidence            76 55666 8899999999998753  4568889999999985

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.71  E-value=1e-16  Score=144.88  Aligned_cols=227  Identities=19%  Similarity=0.183  Sum_probs=177.9

Q ss_pred             cchhhccCCCCCccEEEEecCCCccchhcch-hHHhccCCceeEEEcCCCCCCCC-cccccCcccccEEecCCCCCcccc
Q 037494          134 IEFISLEQSDMYLQSFLNHSSESDHLALIDC-ENFCENFKYLRVLNWGSAVLDQF-PPGLENLFLLKYLQLNIPTLKCLP  211 (394)
Q Consensus       134 ~~~~~~~~~~~~lr~L~l~~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~l~~lp  211 (394)
                      ...+|... .+.++.|.+.++.+.     .+ +..|.++++|++|+++++.+..+ |..+.++++|++|++++|.++.+|
T Consensus        22 L~~lP~~l-~~~l~~L~Ls~N~i~-----~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~   95 (305)
T d1xkua_          22 LEKVPKDL-PPDTALLDLQNNKIT-----EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP   95 (305)
T ss_dssp             CCSCCCSC-CTTCCEEECCSSCCC-----CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCC
T ss_pred             CCccCCCC-CCCCCEEECcCCcCC-----CcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCc
Confidence            34455432 368999999999876     44 33348999999999999999877 567999999999999999999998


Q ss_pred             ccccCCCCCcEEEcc-cCCccccchh-hccCccCcEEEeeCCCCC---CCCCCCCCCCCcCceeCccccC-CCcchhcCC
Q 037494          212 LLICTLLNLETLEMP-AGYIDHSPEG-IWMMQKLMHLNFDSITLP---APPKNYSSSLKNLIFISALHPS-SCTPDILSR  285 (394)
Q Consensus       212 ~~l~~l~~L~~L~l~-~~~l~~lp~~-i~~l~~L~~L~l~~~~~~---~~~p~~l~~l~~L~~L~~~~~~-~~~~~~l~~  285 (394)
                      ..+  ...++.|++. + .+..++.. +.....+..+... .+..   ...+..+..+++|+.+.+.++. ...+..  .
T Consensus        96 ~~~--~~~l~~L~~~~n-~l~~l~~~~~~~~~~~~~l~~~-~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~--~  169 (305)
T d1xkua_          96 EKM--PKTLQELRVHEN-EITKVRKSVFNGLNQMIVVELG-TNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG--L  169 (305)
T ss_dssp             SSC--CTTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECC-SSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSS--C
T ss_pred             cch--hhhhhhhhcccc-chhhhhhhhhhccccccccccc-cccccccCCCccccccccccCccccccCCccccCcc--c
Confidence            764  4588999999 7 77777753 5567778888887 6542   2233456778889999888877 433333  3


Q ss_pred             CCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCccCC-CCCCCCCCceEEEEecccCCCCCcccccCCCCC
Q 037494          286 LPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRL  364 (394)
Q Consensus       286 l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L  364 (394)
                      +++|+.|++.++.  .....+..+..++.++.|++++ ..+..+.| ++.. +++|++|+|++|+++.. ++.+..+++|
T Consensus       170 ~~~L~~L~l~~n~--~~~~~~~~~~~~~~l~~L~~s~-n~l~~~~~~~~~~-l~~L~~L~L~~N~L~~l-p~~l~~l~~L  244 (305)
T d1xkua_         170 PPSLTELHLDGNK--ITKVDAASLKGLNNLAKLGLSF-NSISAVDNGSLAN-TPHLRELHLNNNKLVKV-PGGLADHKYI  244 (305)
T ss_dssp             CTTCSEEECTTSC--CCEECTGGGTTCTTCCEEECCS-SCCCEECTTTGGG-STTCCEEECCSSCCSSC-CTTTTTCSSC
T ss_pred             CCccCEEECCCCc--CCCCChhHhhcccccccccccc-ccccccccccccc-cccceeeeccccccccc-ccccccccCC
Confidence            6789999999987  5666677888999999999998 67888844 8888 99999999999998654 4578899999


Q ss_pred             CeEEEecccccCc
Q 037494          365 QVMKLKRNSYFGR  377 (394)
Q Consensus       365 ~~L~l~~n~~~~~  377 (394)
                      ++|+|++|+++..
T Consensus       245 ~~L~Ls~N~i~~i  257 (305)
T d1xkua_         245 QVVYLHNNNISAI  257 (305)
T ss_dssp             CEEECCSSCCCCC
T ss_pred             CEEECCCCccCcc
Confidence            9999999987653

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=9e-17  Score=143.70  Aligned_cols=209  Identities=16%  Similarity=0.103  Sum_probs=165.4

Q ss_pred             EEEcCCCCCCCCcccccCcccccEEecCCCCCccccc-cccCCCCCcEEEcc-cCCccccch-hhccCccCcEEEeeCCC
Q 037494          176 VLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPL-LICTLLNLETLEMP-AGYIDHSPE-GIWMMQKLMHLNFDSIT  252 (394)
Q Consensus       176 ~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~-~~~l~~lp~-~i~~l~~L~~L~l~~~~  252 (394)
                      ++..++.+++.+|..+.  ..+++|+|++|.++.+|+ .+.++++|++|+++ + .+..++. .+..+..++.+.....+
T Consensus        15 ~v~c~~~~L~~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n-~l~~i~~~~~~~~~~~~~l~~~~~~   91 (284)
T d1ozna_          15 TTSCPQQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNA   91 (284)
T ss_dssp             EEECCSSCCSSCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCT
T ss_pred             EEEcCCCCCCccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccc-ccccccccccccccccccccccccc
Confidence            34677778888887665  578999999999999985 58899999999999 8 7877765 45668889998876133


Q ss_pred             CCCCC-CCCCCCCCcCceeCccccC--CCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCcc
Q 037494          253 LPAPP-KNYSSSLKNLIFISALHPS--SCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRM  329 (394)
Q Consensus       253 ~~~~~-p~~l~~l~~L~~L~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L  329 (394)
                      ....+ |..++++++|++|.+..+.  ......+...++|+.+++.++.  .....+..+..+++|+.|++++ ++++.+
T Consensus        92 ~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~--l~~i~~~~f~~~~~L~~L~l~~-N~l~~l  168 (284)
T d1ozna_          92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA--LQALPDDTFRDLGNLTHLFLHG-NRISSV  168 (284)
T ss_dssp             TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCS-SCCCEE
T ss_pred             ccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhcccc--ccccChhHhccccchhhccccc-Cccccc
Confidence            36666 4558999999999999888  3345567788999999999985  3333346678889999999998 688888


Q ss_pred             CC-CCCCCCCCceEEEEecccCCCCCcccccCCCCCCeEEEecccccCceeEEeCCCCCcCCccc
Q 037494          330 VL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFGRKLACVGSGGFPELQVL  393 (394)
Q Consensus       330 ~p-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~fp~L~~L  393 (394)
                      .| ++.. +++|+.+++++|++....+..+.++++|++|++++|.+.+.....  .+.+++|+.|
T Consensus       169 ~~~~f~~-l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~--~~~~~~L~~L  230 (284)
T d1ozna_         169 PERAFRG-LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEA--LAPLRALQYL  230 (284)
T ss_dssp             CTTTTTT-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHH--HTTCTTCCEE
T ss_pred             chhhhcc-ccccchhhhhhccccccChhHhhhhhhcccccccccccccccccc--cccccccCEE
Confidence            44 7888 999999999999998777788999999999999999887654221  2356666655

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=4.2e-16  Score=131.71  Aligned_cols=161  Identities=19%  Similarity=0.243  Sum_probs=98.1

Q ss_pred             CcccccEEecCCCCCccccccccCCCCCcEEEcc-cCCccccchhhccCccCcEEEeeCCCCCCCCCCCCCCCCcCceeC
Q 037494          193 NLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITLPAPPKNYSSSLKNLIFIS  271 (394)
Q Consensus       193 ~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~  271 (394)
                      .+.++++|+++++.++.++ ++..+++|++|+++ | .+..+++ ++++++|++|+++ +|....++ .++.+++|+.|.
T Consensus        38 ~l~~l~~L~l~~~~i~~l~-~l~~l~nL~~L~Ls~N-~l~~~~~-l~~l~~L~~L~l~-~n~~~~~~-~l~~l~~L~~L~  112 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNN-QLTDITP-LKNLTKLVDILMN-NNQIADIT-PLANLTNLTGLT  112 (199)
T ss_dssp             HHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECC-SSCCCCCG-GGTTCTTCSEEE
T ss_pred             HhcCCCEEECCCCCCCCcc-ccccCCCcCcCccccc-cccCccc-ccCCccccccccc-cccccccc-cccccccccccc
Confidence            4556666666666666553 45566666666666 5 5555543 6666666666666 65554443 355666666666


Q ss_pred             ccccCCCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCccCCCCCCCCCCceEEEEecccCC
Q 037494          272 ALHPSSCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVLSEYQFPPSLIQLSLSNTELM  351 (394)
Q Consensus       272 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p~~~~~l~~L~~L~L~~~~l~  351 (394)
                      +.++.......+..+++|+.|++++|.   ...++ .+..+++|+.|++.+ +++..+ +.++. +++|+.|++++|+++
T Consensus       113 l~~~~~~~~~~~~~l~~L~~L~l~~n~---l~~~~-~l~~~~~L~~L~l~~-n~l~~l-~~l~~-l~~L~~L~ls~N~i~  185 (199)
T d2omxa2         113 LFNNQITDIDPLKNLTNLNRLELSSNT---ISDIS-ALSGLTSLQQLNFSS-NQVTDL-KPLAN-LTTLERLDISSNKVS  185 (199)
T ss_dssp             CCSSCCCCCGGGTTCTTCSEEECCSSC---CCCCG-GGTTCTTCSEEECCS-SCCCCC-GGGTT-CTTCCEEECCSSCCC
T ss_pred             ccccccccccccchhhhhHHhhhhhhh---hcccc-ccccccccccccccc-ccccCC-ccccC-CCCCCEEECCCCCCC
Confidence            655553334456667777777777664   22222 355666777777766 455555 44455 777888888888764


Q ss_pred             CCCcccccCCCCCCeE
Q 037494          352 EDPMPMLERLPRLQVM  367 (394)
Q Consensus       352 ~~~~~~l~~l~~L~~L  367 (394)
                      .  ++.++++++|+.|
T Consensus       186 ~--i~~l~~L~~L~~L  199 (199)
T d2omxa2         186 D--ISVLAKLTNLESL  199 (199)
T ss_dssp             C--CGGGGGCTTCSEE
T ss_pred             C--CccccCCCCCCcC
Confidence            3  4556777777765

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=3.7e-16  Score=133.16  Aligned_cols=164  Identities=21%  Similarity=0.209  Sum_probs=95.7

Q ss_pred             cccccEEecCCCCCccccccccCCCCCcEEEcc-cCCccccchhhccCccCcEEEeeCCCCCCCCCCCCCCCCcCceeCc
Q 037494          194 LFLLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITLPAPPKNYSSSLKNLIFISA  272 (394)
Q Consensus       194 l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~  272 (394)
                      +..|++|+++++.++.++ ++..+++|++|+++ | .+..+++ ++.+++|++|+++ +|.+..+| .++.+++|+.|.+
T Consensus        45 L~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~L~~n-~i~~l~~-~~~l~~L~~L~l~-~n~i~~l~-~l~~l~~L~~L~l  119 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLD-ENKVKDLS-SLKDLKKLKSLSL  119 (210)
T ss_dssp             HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECC-SSCCCCGG-GGTTCTTCCEEEC
T ss_pred             hcCccEEECcCCCCCCch-hHhhCCCCCEEeCCCc-cccCccc-cccCccccccccc-cccccccc-ccccccccccccc
Confidence            344455555555544443 34445555555555 4 4444442 4445555555555 54444443 3444555555555


Q ss_pred             cccCCCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCccCCCCCCCCCCceEEEEecccCCC
Q 037494          273 LHPSSCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVLSEYQFPPSLIQLSLSNTELME  352 (394)
Q Consensus       273 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p~~~~~l~~L~~L~L~~~~l~~  352 (394)
                      .++....+..+..+++++.+.++++.  ...  +..+..+++|+.+++++ +++..+ +.+.. +++|+.|++++|+++ 
T Consensus       120 ~~~~~~~~~~l~~l~~l~~l~~~~n~--l~~--~~~~~~l~~L~~l~l~~-n~l~~i-~~l~~-l~~L~~L~Ls~N~i~-  191 (210)
T d1h6ta2         120 EHNGISDINGLVHLPQLESLYLGNNK--ITD--ITVLSRLTKLDTLSLED-NQISDI-VPLAG-LTKLQNLYLSKNHIS-  191 (210)
T ss_dssp             TTSCCCCCGGGGGCTTCCEEECCSSC--CCC--CGGGGGCTTCSEEECCS-SCCCCC-GGGTT-CTTCCEEECCSSCCC-
T ss_pred             cccccccccccccccccccccccccc--ccc--ccccccccccccccccc-cccccc-ccccC-CCCCCEEECCCCCCC-
Confidence            54443333445666667777776664  221  22345677788888877 456655 44556 889999999999874 


Q ss_pred             CCcccccCCCCCCeEEEec
Q 037494          353 DPMPMLERLPRLQVMKLKR  371 (394)
Q Consensus       353 ~~~~~l~~l~~L~~L~l~~  371 (394)
                       .++.+.++++|++|+|++
T Consensus       192 -~l~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         192 -DLRALAGLKNLDVLELFS  209 (210)
T ss_dssp             -BCGGGTTCTTCSEEEEEE
T ss_pred             -CChhhcCCCCCCEEEccC
Confidence             356788999999999853

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=3e-16  Score=133.78  Aligned_cols=163  Identities=19%  Similarity=0.137  Sum_probs=84.3

Q ss_pred             CceeEEEcCCCCCCCCcccccCcccccEEecCCCCCccccccccCCCCCcEEEcc-cCCccccchhhccCccCcEEEeeC
Q 037494          172 KYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLNFDS  250 (394)
Q Consensus       172 ~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~  250 (394)
                      ..|+.|+++++.+..++. +..+++|++|++++|.++.++ .++.+++|++|+++ | .+..+| .+..+++|+.|+++ 
T Consensus        46 ~~L~~L~l~~~~i~~l~~-l~~l~~L~~L~L~~n~i~~l~-~~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~l~-  120 (210)
T d1h6ta2          46 NSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDEN-KVKDLS-SLKDLKKLKSLSLE-  120 (210)
T ss_dssp             HTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSS-CCCCGG-GGTTCTTCCEEECT-
T ss_pred             cCccEEECcCCCCCCchh-HhhCCCCCEEeCCCccccCcc-ccccCccccccccccc-cccccc-cccccccccccccc-
Confidence            445555555555554432 455555555555555555554 34555555555555 5 555554 35555555555555 


Q ss_pred             CCCCCCCCCCCCCCCcCceeCccccCCCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCccC
Q 037494          251 ITLPAPPKNYSSSLKNLIFISALHPSSCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMV  330 (394)
Q Consensus       251 ~~~~~~~p~~l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~  330 (394)
                      +|....++ .+..+++++.+.+..+....+..+..+++|+.++++++.  . ..++ .+..+++|+.|++++ +.++.+ 
T Consensus       121 ~~~~~~~~-~l~~l~~l~~l~~~~n~l~~~~~~~~l~~L~~l~l~~n~--l-~~i~-~l~~l~~L~~L~Ls~-N~i~~l-  193 (210)
T d1h6ta2         121 HNGISDIN-GLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQ--I-SDIV-PLAGLTKLQNLYLSK-NHISDL-  193 (210)
T ss_dssp             TSCCCCCG-GGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC--C-CCCG-GGTTCTTCCEEECCS-SCCCBC-
T ss_pred             cccccccc-ccccccccccccccccccccccccccccccccccccccc--c-cccc-cccCCCCCCEEECCC-CCCCCC-
Confidence            55433332 344455555555544442233344555566666666553  2 1222 255566666666665 345555 


Q ss_pred             CCCCCCCCCceEEEEec
Q 037494          331 LSEYQFPPSLIQLSLSN  347 (394)
Q Consensus       331 p~~~~~l~~L~~L~L~~  347 (394)
                      |.+.. +++|++|+|++
T Consensus       194 ~~l~~-l~~L~~L~Ls~  209 (210)
T d1h6ta2         194 RALAG-LKNLDVLELFS  209 (210)
T ss_dssp             GGGTT-CTTCSEEEEEE
T ss_pred             hhhcC-CCCCCEEEccC
Confidence            44445 66666666653

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.63  E-value=2.8e-15  Score=129.22  Aligned_cols=188  Identities=20%  Similarity=0.233  Sum_probs=152.6

Q ss_pred             CCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCcccccCcccccEEecCCCCCccccccccCCCCC
Q 037494          141 QSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNL  220 (394)
Q Consensus       141 ~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~L  220 (394)
                      .++.+|+.|.+.++...     .++.+ ..+++|++|++++|.+..+++ +..+.+|+++++++|.++.++ .++.+++|
T Consensus        38 ~~l~~L~~L~l~~~~i~-----~l~~l-~~l~~L~~L~ls~n~i~~~~~-l~~l~~l~~l~~~~n~~~~i~-~l~~l~~L  109 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGVT-----TIEGV-QYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSI  109 (227)
T ss_dssp             HHHHTCCEEECTTSCCC-----CCTTG-GGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTC
T ss_pred             HHcCCcCEEECCCCCCC-----cchhH-hcCCCCcEeecCCceeecccc-ccccccccccccccccccccc-cccccccc
Confidence            45678999999988776     45556 899999999999999987764 899999999999999998886 68899999


Q ss_pred             cEEEcc-cCCccccchhhccCccCcEEEeeCCCCCCCCCCCCCCCCcCceeCccccCCCcchhcCCCCCCCeEEEeecCC
Q 037494          221 ETLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITLPAPPKNYSSSLKNLIFISALHPSSCTPDILSRLPTVQTLRISGDLS  299 (394)
Q Consensus       221 ~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  299 (394)
                      ++++++ + ....++ .+...+.++.+.++ ++.....+ .+...++|+.|.+..+.......++.+++|+.|++++|. 
T Consensus       110 ~~l~l~~~-~~~~~~-~~~~~~~~~~l~~~-~~~~~~~~-~~~~~~~L~~L~l~~n~~~~~~~l~~l~~L~~L~Ls~n~-  184 (227)
T d1h6ua2         110 KTLDLTST-QITDVT-PLAGLSNLQVLYLD-LNQITNIS-PLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNK-  184 (227)
T ss_dssp             CEEECTTS-CCCCCG-GGTTCTTCCEEECC-SSCCCCCG-GGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC-
T ss_pred             cccccccc-cccccc-hhccccchhhhhch-hhhhchhh-hhccccccccccccccccccchhhcccccceecccCCCc-
Confidence            999999 7 555554 46678899999998 77655443 467788999999988874445568999999999999985 


Q ss_pred             ccccchhhhhcCCCCCcEEEecCCCCCCccCCCCCCCCCCceEEEEec
Q 037494          300 HYHSGVSKSLCELHKLECLKLVNGSKLSRMVLSEYQFPPSLIQLSLSN  347 (394)
Q Consensus       300 ~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p~~~~~l~~L~~L~L~~  347 (394)
                        ...++ .++.+++|+.|++++ ++++.+ |.++. +++|+.|+|++
T Consensus       185 --l~~l~-~l~~l~~L~~L~Ls~-N~lt~i-~~l~~-l~~L~~L~lsn  226 (227)
T d1h6ua2         185 --ISDIS-PLASLPNLIEVHLKN-NQISDV-SPLAN-TSNLFIVTLTN  226 (227)
T ss_dssp             --CCCCG-GGGGCTTCCEEECTT-SCCCBC-GGGTT-CTTCCEEEEEE
T ss_pred             --cCCCh-hhcCCCCCCEEECcC-CcCCCC-ccccc-CCCCCEEEeeC
Confidence              33343 478899999999999 578888 65667 89999999974

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.63  E-value=1.6e-15  Score=128.09  Aligned_cols=143  Identities=18%  Similarity=0.177  Sum_probs=70.4

Q ss_pred             CCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCcccccCcccccEEecCCCCCccccccccCCCCCcE
Q 037494          143 DMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLET  222 (394)
Q Consensus       143 ~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~  222 (394)
                      +.+++.|.+.++...     .++++ +.+++|++|++++|.++.+++ ++++++|++|++++|.+..+| .++.+++|+.
T Consensus        39 l~~l~~L~l~~~~i~-----~l~~l-~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~  110 (199)
T d2omxa2          39 LDQVTTLQADRLGIK-----SIDGV-EYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADIT-PLANLTNLTG  110 (199)
T ss_dssp             HTTCCEEECTTSCCC-----CCTTG-GGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSE
T ss_pred             hcCCCEEECCCCCCC-----Ccccc-ccCCCcCcCccccccccCccc-ccCCccccccccccccccccc-cccccccccc
Confidence            345555555555443     22333 455555555555555554443 555555555555555555544 3455555555


Q ss_pred             EEcc-cCCccccchhhccCccCcEEEeeCCCCCCCCCCCCCCCCcCceeCccccCCCcchhcCCCCCCCeEEEeec
Q 037494          223 LEMP-AGYIDHSPEGIWMMQKLMHLNFDSITLPAPPKNYSSSLKNLIFISALHPSSCTPDILSRLPTVQTLRISGD  297 (394)
Q Consensus       223 L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~  297 (394)
                      |+++ + ....++ .+..+++|+.|+++ +|....++ .+..+++|+.|.+.++.....+.++.+++|+.|++++|
T Consensus       111 L~l~~~-~~~~~~-~~~~l~~L~~L~l~-~n~l~~~~-~l~~~~~L~~L~l~~n~l~~l~~l~~l~~L~~L~ls~N  182 (199)
T d2omxa2         111 LTLFNN-QITDID-PLKNLTNLNRLELS-SNTISDIS-ALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSN  182 (199)
T ss_dssp             EECCSS-CCCCCG-GGTTCTTCSEEECC-SSCCCCCG-GGTTCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSS
T ss_pred             cccccc-cccccc-ccchhhhhHHhhhh-hhhhcccc-cccccccccccccccccccCCccccCCCCCCEEECCCC
Confidence            5555 4 333332 24455555555555 55443332 34455555555555444222233455555555555554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=3.4e-14  Score=123.41  Aligned_cols=191  Identities=13%  Similarity=0.072  Sum_probs=127.4

Q ss_pred             CceeEEEcCCCCCCCCcc-cccCcccccEEecCCCCCcc-cc-ccccCCCCCcEEEcc-cCCccccch-hhccCccCcEE
Q 037494          172 KYLRVLNWGSAVLDQFPP-GLENLFLLKYLQLNIPTLKC-LP-LLICTLLNLETLEMP-AGYIDHSPE-GIWMMQKLMHL  246 (394)
Q Consensus       172 ~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~l~~-lp-~~l~~l~~L~~L~l~-~~~l~~lp~-~i~~l~~L~~L  246 (394)
                      +++++|++++|.++.+|. .+.++++|++|++++|.+.. +| ..+.++++++++.+. ++.+..++. .+..+++|+++
T Consensus        29 ~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l  108 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  108 (242)
T ss_dssp             SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEE
T ss_pred             CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccccc
Confidence            478888898888888774 57888899999998887664 33 346778888888887 546666654 46788899999


Q ss_pred             EeeCCCCCCCCCCCCCCCCcCceeC---ccccC-CC-cchhcCCCC-CCCeEEEeecCCccccchhhhhcCCCCCcEEEe
Q 037494          247 NFDSITLPAPPKNYSSSLKNLIFIS---ALHPS-SC-TPDILSRLP-TVQTLRISGDLSHYHSGVSKSLCELHKLECLKL  320 (394)
Q Consensus       247 ~l~~~~~~~~~p~~l~~l~~L~~L~---~~~~~-~~-~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l  320 (394)
                      +++ ++.....+. ...+.+++.+.   ..+.. .. ....+..++ .++.|++.++.   ...++.......+++.+..
T Consensus       109 ~l~-~~~l~~~~~-~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~---l~~i~~~~~~~~~l~~~~~  183 (242)
T d1xwdc1         109 LIS-NTGIKHLPD-VHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG---IQEIHNCAFNGTQLDELNL  183 (242)
T ss_dssp             EEE-SCCCCSCCC-CTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC---CCEECTTTTTTCCEEEEEC
T ss_pred             ccc-hhhhccccc-ccccccccccccccccccccccccccccccccccceeeeccccc---ccccccccccchhhhcccc
Confidence            998 877655443 33344444443   23222 11 122333333 56777777764   3344444445566666655


Q ss_pred             cCCCCCCccCC--CCCCCCCCceEEEEecccCCCCCcccccCCCCCCeEEE
Q 037494          321 VNGSKLSRMVL--SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKL  369 (394)
Q Consensus       321 ~~~~~L~~L~p--~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l  369 (394)
                      ..+++++++ |  .+.. +++|+.|+|++|+++..+...+.++++|+.+++
T Consensus       184 l~~n~l~~l-~~~~f~~-l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~  232 (242)
T d1xwdc1         184 SDNNNLEEL-PNDVFHG-ASGPVILDISRTRIHSLPSYGLENLKKLRARST  232 (242)
T ss_dssp             TTCTTCCCC-CTTTTTT-SCCCSEEECTTSCCCCCCSSSCTTCCEEESSSE
T ss_pred             ccccccccc-cHHHhcC-CCCCCEEECCCCcCCccCHHHHcCCcccccCcC
Confidence            444778888 6  4677 899999999999887665556677777777766

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=6.5e-14  Score=121.64  Aligned_cols=198  Identities=13%  Similarity=0.130  Sum_probs=141.3

Q ss_pred             eEEEcCCCCCCCCcccccCcccccEEecCCCCCcccccc-ccCCCCCcEEEcc-cCCccccch-hhccCccCcEEEeeCC
Q 037494          175 RVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLL-ICTLLNLETLEMP-AGYIDHSPE-GIWMMQKLMHLNFDSI  251 (394)
Q Consensus       175 ~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~-l~~l~~L~~L~l~-~~~l~~lp~-~i~~l~~L~~L~l~~~  251 (394)
                      ++++.++..++.+|+.+.  .++++|++++|.++.+|.. +.++++|++|+++ |.....+|. .+..+++++++.+. .
T Consensus        11 ~~i~c~~~~l~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~-~   87 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE-K   87 (242)
T ss_dssp             SEEEEESCSCSSCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE-C
T ss_pred             CEEEEeCCCCCCcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccc-c
Confidence            678888888999997664  5899999999999999874 7889999999999 833344543 47789999999987 5


Q ss_pred             C-CCCCCC-CCCCCCCcCceeCccccCCCcchhcCCCCCCCeEEEeecCCccccchh-hhhcCC-CCCcEEEecCCCCCC
Q 037494          252 T-LPAPPK-NYSSSLKNLIFISALHPSSCTPDILSRLPTVQTLRISGDLSHYHSGVS-KSLCEL-HKLECLKLVNGSKLS  327 (394)
Q Consensus       252 ~-~~~~~p-~~l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~l~~~-~~L~~L~l~~~~~L~  327 (394)
                      + .....+ ..+..+++|+.+.+..+..........+..++.+............++ ..+..+ ..++.|++.+ +.+.
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~-n~l~  166 (242)
T d1xwdc1          88 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK-NGIQ  166 (242)
T ss_dssp             CTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS-SCCC
T ss_pred             cccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccc-cccc
Confidence            4 354444 447889999999999887333334455556665554433311233332 334444 3788889887 7788


Q ss_pred             ccCC-CCCCCCCCceEEE-EecccCCCCCcccccCCCCCCeEEEecccccCce
Q 037494          328 RMVL-SEYQFPPSLIQLS-LSNTELMEDPMPMLERLPRLQVMKLKRNSYFGRK  378 (394)
Q Consensus       328 ~L~p-~~~~~l~~L~~L~-L~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~  378 (394)
                      .+ + .... .++++.+. +.+|+++..+...+.++++|++|++++|++....
T Consensus       167 ~i-~~~~~~-~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~  217 (242)
T d1xwdc1         167 EI-HNCAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP  217 (242)
T ss_dssp             EE-CTTTTT-TCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCC
T ss_pred             cc-cccccc-chhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccC
Confidence            88 5 4444 56666665 5667887666667899999999999999887543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.47  E-value=7.2e-14  Score=108.04  Aligned_cols=98  Identities=23%  Similarity=0.267  Sum_probs=69.4

Q ss_pred             eEEEcCCCCCCCCcccccCcccccEEecCCCCCccccccccCCCCCcEEEcc-cCCccccchhhccCccCcEEEeeCCCC
Q 037494          175 RVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITL  253 (394)
Q Consensus       175 ~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~  253 (394)
                      |+|++++|.++.++. ++.+++|++|++++|.++.+|+.++.+++|++|+++ | .+..+| +++.+++|++|+++ +|.
T Consensus         1 R~L~Ls~n~l~~l~~-l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N-~i~~l~-~~~~l~~L~~L~l~-~N~   76 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLC-NNR   76 (124)
T ss_dssp             SEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECC-SSC
T ss_pred             CEEEcCCCCCCCCcc-cccCCCCCEEECCCCccCcchhhhhhhhcccccccccc-cccccC-ccccccccCeEECC-CCc
Confidence            577888888877764 777788888888888888887777778888888888 7 777776 47778888888887 776


Q ss_pred             CCCCCC--CCCCCCcCceeCccccC
Q 037494          254 PAPPKN--YSSSLKNLIFISALHPS  276 (394)
Q Consensus       254 ~~~~p~--~l~~l~~L~~L~~~~~~  276 (394)
                      +..+|.  .++.+++|++|++.++.
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N~  101 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGNS  101 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred             cCCCCCchhhcCCCCCCEEECCCCc
Confidence            655542  24445555555554443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=3.1e-15  Score=133.53  Aligned_cols=193  Identities=16%  Similarity=0.148  Sum_probs=113.3

Q ss_pred             ccCCceeEEEcCCCCCC--CCcccccCcccccEEecCCCCCc-cccccccCCCCCcEEEcc-cCCccc--cchhhccCcc
Q 037494          169 ENFKYLRVLNWGSAVLD--QFPPGLENLFLLKYLQLNIPTLK-CLPLLICTLLNLETLEMP-AGYIDH--SPEGIWMMQK  242 (394)
Q Consensus       169 ~~l~~L~~L~l~~~~~~--~lp~~i~~l~~L~~L~l~~~~l~-~lp~~l~~l~~L~~L~l~-~~~l~~--lp~~i~~l~~  242 (394)
                      .....|++|+++++.+.  .++..+..+++|++|+++++.+. ..+..++.+++|++|+++ |..+..  +..-...+++
T Consensus        43 ~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~  122 (284)
T d2astb2          43 FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR  122 (284)
T ss_dssp             CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTT
T ss_pred             ccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHh
Confidence            34557788888877765  34455667778888888887665 345567777888888887 645542  2222346778


Q ss_pred             CcEEEeeCCCC-CCC--CCCCCCC-CCcCceeCccccC-----CCcchhcCCCCCCCeEEEeecCCccccchhhhhcCCC
Q 037494          243 LMHLNFDSITL-PAP--PKNYSSS-LKNLIFISALHPS-----SCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELH  313 (394)
Q Consensus       243 L~~L~l~~~~~-~~~--~p~~l~~-l~~L~~L~~~~~~-----~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~  313 (394)
                      |++|+++ +|. ...  +...+.. .++|+.|.+.++.     .....-...+++|++|++++|.. ..+.....+..++
T Consensus       123 L~~L~ls-~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~-itd~~~~~l~~~~  200 (284)
T d2astb2         123 LDELNLS-WCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM-LKNDCFQEFFQLN  200 (284)
T ss_dssp             CCEEECC-CCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTT-CCGGGGGGGGGCT
T ss_pred             ccccccc-cccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccC-CCchhhhhhcccC
Confidence            8888887 764 211  1111222 3467777776543     11112234567777777776641 2234445666777


Q ss_pred             CCcEEEecCCCCCCccCC-CCCCCCCCceEEEEecccCCCCCcccc-cCCCCCC
Q 037494          314 KLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPML-ERLPRLQ  365 (394)
Q Consensus       314 ~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l~~~~~~~l-~~l~~L~  365 (394)
                      +|++|++++|+++..-.. .++. +++|+.|++++| +....++.+ ..+|+|+
T Consensus       201 ~L~~L~L~~C~~i~~~~l~~L~~-~~~L~~L~l~~~-~~d~~l~~l~~~lp~L~  252 (284)
T d2astb2         201 YLQHLSLSRCYDIIPETLLELGE-IPTLKTLQVFGI-VPDGTLQLLKEALPHLQ  252 (284)
T ss_dssp             TCCEEECTTCTTCCGGGGGGGGG-CTTCCEEECTTS-SCTTCHHHHHHHSTTSE
T ss_pred             cCCEEECCCCCCCChHHHHHHhc-CCCCCEEeeeCC-CCHHHHHHHHHhCcccc
Confidence            777777777665543212 4455 677777777777 344444443 2455543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.43  E-value=1.2e-12  Score=119.55  Aligned_cols=155  Identities=16%  Similarity=0.066  Sum_probs=86.4

Q ss_pred             eEEEEEEeCCcchhhccCCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCcccccCcccccEEecC
Q 037494          124 VKRCFILEDLIEFISLEQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLN  203 (394)
Q Consensus       124 ~r~L~l~~~~~~~~~~~~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~  203 (394)
                      +++|.+.......+|+  ..++|++|.+.++...     .+|+   .+.+|+.|++++|.++.++.-.   ..|++|+++
T Consensus        40 l~~LdLs~~~L~~lp~--~~~~L~~L~Ls~N~l~-----~lp~---~~~~L~~L~l~~n~l~~l~~lp---~~L~~L~L~  106 (353)
T d1jl5a_          40 AHELELNNLGLSSLPE--LPPHLESLVASCNSLT-----ELPE---LPQSLKSLLVDNNNLKALSDLP---PLLEYLGVS  106 (353)
T ss_dssp             CSEEECTTSCCSCCCS--CCTTCSEEECCSSCCS-----SCCC---CCTTCCEEECCSSCCSCCCSCC---TTCCEEECC
T ss_pred             CCEEEeCCCCCCCCCC--CCCCCCEEECCCCCCc-----cccc---chhhhhhhhhhhcccchhhhhc---ccccccccc
Confidence            4455555444444443  2456777777766554     2332   2356677777777766554311   346777777


Q ss_pred             CCCCccccccccCCCCCcEEEcc-cCCccccchhhccCccCcEEEeeCCCCCCCCCCCCCCCCcCceeCccccC------
Q 037494          204 IPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITLPAPPKNYSSSLKNLIFISALHPS------  276 (394)
Q Consensus       204 ~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~------  276 (394)
                      +|.+..+|. .+.+++|++|+++ + .+...|..   ...+..+.+. .+.... +..++.++.++.+.+..+.      
T Consensus       107 ~n~l~~lp~-~~~l~~L~~L~l~~~-~~~~~~~~---~~~l~~l~~~-~~~~~~-~~~l~~l~~l~~L~l~~n~~~~~~~  179 (353)
T d1jl5a_         107 NNQLEKLPE-LQNSSFLKIIDVDNN-SLKKLPDL---PPSLEFIAAG-NNQLEE-LPELQNLPFLTAIYADNNSLKKLPD  179 (353)
T ss_dssp             SSCCSSCCC-CTTCTTCCEEECCSS-CCSCCCCC---CTTCCEEECC-SSCCSS-CCCCTTCTTCCEEECCSSCCSSCCC
T ss_pred             ccccccccc-hhhhccceeeccccc-cccccccc---cccccchhhc-cccccc-cccccccccceeccccccccccccc
Confidence            777777763 5667777777777 5 55555432   3445555555 433222 2335566666666654443      


Q ss_pred             --------------CCcchhcCCCCCCCeEEEeecC
Q 037494          277 --------------SCTPDILSRLPTVQTLRISGDL  298 (394)
Q Consensus       277 --------------~~~~~~l~~l~~L~~L~l~~~~  298 (394)
                                    .........++.|+.+.++++.
T Consensus       180 ~~~~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~  215 (353)
T d1jl5a_         180 LPLSLESIVAGNNILEELPELQNLPFLTTIYADNNL  215 (353)
T ss_dssp             CCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSC
T ss_pred             cccccccccccccccccccccccccccccccccccc
Confidence                          1122334556777888777664

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.40  E-value=2.5e-13  Score=104.97  Aligned_cols=103  Identities=17%  Similarity=0.179  Sum_probs=89.7

Q ss_pred             cEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCcccccCcccccEEecCCCCCccccccccCCCCCcEEEcc
Q 037494          147 QSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMP  226 (394)
Q Consensus       147 r~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~  226 (394)
                      |.|.+.++...     .++.+ ..+++|++|++++|.++.+|+.++.+++|+.|++++|.++.+| +++++++|++|+++
T Consensus         1 R~L~Ls~n~l~-----~l~~l-~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~   73 (124)
T d1dcea3           1 RVLHLAHKDLT-----VLCHL-EQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLC   73 (124)
T ss_dssp             SEEECTTSCCS-----SCCCG-GGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECC
T ss_pred             CEEEcCCCCCC-----CCccc-ccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccC-ccccccccCeEECC
Confidence            56778888776     44555 8999999999999999999999999999999999999999997 69999999999999


Q ss_pred             -cCCccccch--hhccCccCcEEEeeCCCCCCCCC
Q 037494          227 -AGYIDHSPE--GIWMMQKLMHLNFDSITLPAPPK  258 (394)
Q Consensus       227 -~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~p  258 (394)
                       | .+..+|.  .++.+++|++|+++ +|.+...+
T Consensus        74 ~N-~i~~~~~~~~l~~~~~L~~L~l~-~N~i~~~~  106 (124)
T d1dcea3          74 NN-RLQQSAAIQPLVSCPRLVLLNLQ-GNSLCQEE  106 (124)
T ss_dssp             SS-CCCSSSTTGGGGGCTTCCEEECT-TSGGGGSS
T ss_pred             CC-ccCCCCCchhhcCCCCCCEEECC-CCcCCcCc
Confidence             8 8888873  68899999999999 88755443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1.9e-13  Score=110.84  Aligned_cols=105  Identities=18%  Similarity=0.090  Sum_probs=76.5

Q ss_pred             ccCCceeEEEcCCCCCCCCcccccCcccccEEecCCCCCccccccccCCCCCcEEEcc-cCCccccchhh-ccCccCcEE
Q 037494          169 ENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGI-WMMQKLMHL  246 (394)
Q Consensus       169 ~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i-~~l~~L~~L  246 (394)
                      .+...+|.|++++|+++.++..+..+.+|++|++++|.+..++ .+..+++|++|+++ | .+..+|+.+ ..+++|++|
T Consensus        15 ~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N-~i~~l~~~~~~~l~~L~~L   92 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTEL   92 (162)
T ss_dssp             ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCCEE
T ss_pred             cCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccC-CcccCcchhhhhcccc-cccCCCccccccccccccc
Confidence            5667788888888888888766677888888888888888875 57788888888888 7 787777654 468888888


Q ss_pred             EeeCCCCCCCCCC--CCCCCCcCceeCccccC
Q 037494          247 NFDSITLPAPPKN--YSSSLKNLIFISALHPS  276 (394)
Q Consensus       247 ~l~~~~~~~~~p~--~l~~l~~L~~L~~~~~~  276 (394)
                      +++ +|.+..++.  .+..+++|++|++.+|.
T Consensus        93 ~L~-~N~i~~~~~l~~l~~l~~L~~L~l~~N~  123 (162)
T d1a9na_          93 ILT-NNSLVELGDLDPLASLKSLTYLCILRNP  123 (162)
T ss_dssp             ECC-SCCCCCGGGGGGGGGCTTCCEEECCSSG
T ss_pred             eec-cccccccccccccccccccchhhcCCCc
Confidence            888 777655542  34455555555555544

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=2.1e-13  Score=110.62  Aligned_cols=129  Identities=11%  Similarity=0.039  Sum_probs=107.0

Q ss_pred             ccCCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCcccccCcccccEEecCCCCCccccccc-cCC
Q 037494          139 LEQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLI-CTL  217 (394)
Q Consensus       139 ~~~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~l-~~l  217 (394)
                      ......++|.|.+.++.+.     .+++++..+++|++|++++|.+++++ .+..+++|++|++++|.+..+|+.+ ..+
T Consensus        13 ~~~n~~~lr~L~L~~n~I~-----~i~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l   86 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIP-----VIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQAL   86 (162)
T ss_dssp             EEECTTSCEEEECTTSCCC-----SCCCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCEECSCHHHHC
T ss_pred             hccCcCcCcEEECCCCCCC-----ccCccccccccCCEEECCCCCCCccC-CcccCcchhhhhcccccccCCCccccccc
Confidence            3356778999999999887     44555578999999999999999885 5889999999999999999998765 579


Q ss_pred             CCCcEEEcc-cCCccccch--hhccCccCcEEEeeCCCCCCCCCC----CCCCCCcCceeCcccc
Q 037494          218 LNLETLEMP-AGYIDHSPE--GIWMMQKLMHLNFDSITLPAPPKN----YSSSLKNLIFISALHP  275 (394)
Q Consensus       218 ~~L~~L~l~-~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~p~----~l~~l~~L~~L~~~~~  275 (394)
                      ++|++|+++ | .+..++.  .+..+++|++|+++ +|+....|.    .++.+++|+.|+....
T Consensus        87 ~~L~~L~L~~N-~i~~~~~l~~l~~l~~L~~L~l~-~N~i~~~~~~r~~~i~~lp~L~~LD~~~i  149 (162)
T d1a9na_          87 PDLTELILTNN-SLVELGDLDPLASLKSLTYLCIL-RNPVTNKKHYRLYVIYKVPQVRVLDFQKV  149 (162)
T ss_dssp             TTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECC-SSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred             cccccceeccc-cccccccccccccccccchhhcC-CCccccccchHHHHHHHCCCcCeeCCCCC
Confidence            999999999 8 8888764  57889999999999 998777664    2567778888775543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=4.7e-14  Score=125.66  Aligned_cols=210  Identities=14%  Similarity=0.061  Sum_probs=134.7

Q ss_pred             CCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCC-CCcccccCcccccEEecCCC-CCcc--ccccccC
Q 037494          141 QSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLD-QFPPGLENLFLLKYLQLNIP-TLKC--LPLLICT  216 (394)
Q Consensus       141 ~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~-~lp~~i~~l~~L~~L~l~~~-~l~~--lp~~l~~  216 (394)
                      ....+++.|++.++...   ...+..++..+++|++|+++++.+. ..+..++.+++|++|++++| .++.  +..-...
T Consensus        43 ~~~~~L~~LdLs~~~i~---~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~  119 (284)
T d2astb2          43 FSPFRVQHMDLSNSVIE---VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS  119 (284)
T ss_dssp             CCCBCCCEEECTTCEEC---HHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHH
T ss_pred             ccCCCCCEEECCCCccC---HHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHH
Confidence            34567888888776554   2344666788899999999988876 45567788889999999885 5652  3333456


Q ss_pred             CCCCcEEEcc-cCCccc--cchhhcc-CccCcEEEeeCCCC--CCC--CCCCCCCCCcCceeCccccC---CCcchhcCC
Q 037494          217 LLNLETLEMP-AGYIDH--SPEGIWM-MQKLMHLNFDSITL--PAP--PKNYSSSLKNLIFISALHPS---SCTPDILSR  285 (394)
Q Consensus       217 l~~L~~L~l~-~~~l~~--lp~~i~~-l~~L~~L~l~~~~~--~~~--~p~~l~~l~~L~~L~~~~~~---~~~~~~l~~  285 (394)
                      +++|++|+++ |..+..  ++..+.. .++|+.|+++ ++.  ...  +......+++|++|++.+|.   ...+..+..
T Consensus       120 ~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~-~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~  198 (284)
T d2astb2         120 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS-GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ  198 (284)
T ss_dssp             CTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC-SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGG
T ss_pred             HHhccccccccccccccccchhhhcccccccchhhhc-ccccccccccccccccccccccccccccccCCCchhhhhhcc
Confidence            7889999998 755532  2233433 3678999888 753  111  11112456788999888776   356677888


Q ss_pred             CCCCCeEEEeecCCccccchhhhhcCCCCCcEEEecCCCCCCccCC-CCCCCCCCceEEEEecccCCCCCcccccC
Q 037494          286 LPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLER  360 (394)
Q Consensus       286 l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~  360 (394)
                      +++|++|++++|.. ..+.....++.+++|+.|++.+|-.-..+ + .... +|+|+   +..+.++....+.++.
T Consensus       199 ~~~L~~L~L~~C~~-i~~~~l~~L~~~~~L~~L~l~~~~~d~~l-~~l~~~-lp~L~---i~~~~ls~~~~~~~~~  268 (284)
T d2astb2         199 LNYLQHLSLSRCYD-IIPETLLELGEIPTLKTLQVFGIVPDGTL-QLLKEA-LPHLQ---INCSHFTTIARPTIGN  268 (284)
T ss_dssp             CTTCCEEECTTCTT-CCGGGGGGGGGCTTCCEEECTTSSCTTCH-HHHHHH-STTSE---ESCCCSCCTTCSSCSS
T ss_pred             cCcCCEEECCCCCC-CChHHHHHHhcCCCCCEEeeeCCCCHHHH-HHHHHh-Ccccc---ccCccCCCCCCCccCc
Confidence            88999999988751 23344456777889999998874111111 1 1122 45554   5555655554555543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.28  E-value=2.2e-11  Score=110.80  Aligned_cols=228  Identities=19%  Similarity=0.173  Sum_probs=128.4

Q ss_pred             CCceEEEEEEeCCcchhhccCCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCCcccccCcccccEE
Q 037494          121 LATVKRCFILEDLIEFISLEQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYL  200 (394)
Q Consensus       121 ~~~~r~L~l~~~~~~~~~~~~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L  200 (394)
                      +..+++|.+..+....+|..  ..+|+.|.+.++...     .++++   .+.|++|++++|.+..+|. ++.+++|+.|
T Consensus        57 ~~~L~~L~Ls~N~l~~lp~~--~~~L~~L~l~~n~l~-----~l~~l---p~~L~~L~L~~n~l~~lp~-~~~l~~L~~L  125 (353)
T d1jl5a_          57 PPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLK-----ALSDL---PPLLEYLGVSNNQLEKLPE-LQNSSFLKII  125 (353)
T ss_dssp             CTTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCS-----CCCSC---CTTCCEEECCSSCCSSCCC-CTTCTTCCEE
T ss_pred             CCCCCEEECCCCCCcccccc--hhhhhhhhhhhcccc-----hhhhh---ccccccccccccccccccc-hhhhccceee
Confidence            55788999987777777653  578999999988776     33322   2469999999999999885 6889999999


Q ss_pred             ecCCCCCcccccc-------------------ccCCCCCcEEEcc-cCCccccch-------------------hhccCc
Q 037494          201 QLNIPTLKCLPLL-------------------ICTLLNLETLEMP-AGYIDHSPE-------------------GIWMMQ  241 (394)
Q Consensus       201 ~l~~~~l~~lp~~-------------------l~~l~~L~~L~l~-~~~l~~lp~-------------------~i~~l~  241 (394)
                      +++++.+...|..                   ++.+..++.+.+. + .....+.                   ....++
T Consensus       126 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~  204 (353)
T d1jl5a_         126 DVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNN-SLKKLPDLPLSLESIVAGNNILEELPELQNLP  204 (353)
T ss_dssp             ECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSS-CCSSCCCCCTTCCEEECCSSCCSSCCCCTTCT
T ss_pred             ccccccccccccccccccchhhccccccccccccccccceecccccc-cccccccccccccccccccccccccccccccc
Confidence            9999877655543                   2334444555444 3 2221111                   122233


Q ss_pred             cCcEEEeeCCCCCCCCCCCCCCCCcCceeCccccC-CCcchhcCCCCCCCeEEEeecCCcc--------------ccchh
Q 037494          242 KLMHLNFDSITLPAPPKNYSSSLKNLIFISALHPS-SCTPDILSRLPTVQTLRISGDLSHY--------------HSGVS  306 (394)
Q Consensus       242 ~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~--------------~~~~~  306 (394)
                      .|+.++++ ++....+|.....   +..+.+..+. ...+   .....+....+..+....              ...+.
T Consensus       205 ~L~~l~l~-~n~~~~~~~~~~~---l~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~  277 (353)
T d1jl5a_         205 FLTTIYAD-NNLLKTLPDLPPS---LEALNVRDNYLTDLP---ELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIR  277 (353)
T ss_dssp             TCCEEECC-SSCCSSCCSCCTT---CCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCS
T ss_pred             cccccccc-ccccccccccccc---ccccccccccccccc---cccccccccccccccccccccccchhcccccccCccc
Confidence            44444444 3332222222111   1111111111 0000   001122222222111000              00111


Q ss_pred             hhhcCCCCCcEEEecCCCCCCccCCCCCCCCCCceEEEEecccCCCCCcccccCCCCCCeEEEecccccC
Q 037494          307 KSLCELHKLECLKLVNGSKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVMKLKRNSYFG  376 (394)
Q Consensus       307 ~~l~~~~~L~~L~l~~~~~L~~L~p~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~  376 (394)
                      .....+++|++|++++ +++..+ |  .. +++|+.|+|++|+++..  +.  .+++|++|++++|.+..
T Consensus       278 ~~~~~~~~L~~L~Ls~-N~l~~l-p--~~-~~~L~~L~L~~N~L~~l--~~--~~~~L~~L~L~~N~L~~  338 (353)
T d1jl5a_         278 SLCDLPPSLEELNVSN-NKLIEL-P--AL-PPRLERLIASFNHLAEV--PE--LPQNLKQLHVEYNPLRE  338 (353)
T ss_dssp             EECCCCTTCCEEECCS-SCCSCC-C--CC-CTTCCEEECCSSCCSCC--CC--CCTTCCEEECCSSCCSS
T ss_pred             cccccCCCCCEEECCC-CccCcc-c--cc-cCCCCEEECCCCcCCcc--cc--ccCCCCEEECcCCcCCC
Confidence            1123357899999988 578877 6  12 56799999999988542  22  35689999999888754

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.20  E-value=5.7e-12  Score=105.13  Aligned_cols=120  Identities=17%  Similarity=0.174  Sum_probs=83.7

Q ss_pred             eEEEcCCCCCCCCcccccCcccccEEecCCCCCcc-cc-ccccCCCCCcEEEcc-cCCccccc-hhhccCccCcEEEeeC
Q 037494          175 RVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKC-LP-LLICTLLNLETLEMP-AGYIDHSP-EGIWMMQKLMHLNFDS  250 (394)
Q Consensus       175 ~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~-lp-~~l~~l~~L~~L~l~-~~~l~~lp-~~i~~l~~L~~L~l~~  250 (394)
                      ++++.++++++.+|..+.  .++++|+|++|.|.. ++ ..+.++++|++|+++ + .+..++ ..+..+++|++|+++ 
T Consensus        11 ~~v~Cs~~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N-~i~~~~~~~~~~~~~L~~L~Ls-   86 (192)
T d1w8aa_          11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLG-   86 (192)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECC-
T ss_pred             CEEEEeCCCcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeecccc-ccccccccccccccccceeeec-
Confidence            467777777877777664  577888888888764 33 345677888888888 6 665554 456677888888888 


Q ss_pred             CCCCCCCCCC-CCCCCcCceeCccccC-CCc-chhcCCCCCCCeEEEeecC
Q 037494          251 ITLPAPPKNY-SSSLKNLIFISALHPS-SCT-PDILSRLPTVQTLRISGDL  298 (394)
Q Consensus       251 ~~~~~~~p~~-l~~l~~L~~L~~~~~~-~~~-~~~l~~l~~L~~L~l~~~~  298 (394)
                      +|.+..+|+. ++++++|++|++.++. ... +..+..+++|++|+++++.
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~  137 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred             cccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccc
Confidence            7777766654 6777777777777776 322 3346677777777777765

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.16  E-value=4e-11  Score=99.88  Aligned_cols=126  Identities=17%  Similarity=0.179  Sum_probs=95.5

Q ss_pred             CcEEEcc-cCCccccchhhccCccCcEEEeeCCCCCCC-CC-CCCCCCCcCceeCccccC--CCcchhcCCCCCCCeEEE
Q 037494          220 LETLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITLPAP-PK-NYSSSLKNLIFISALHPS--SCTPDILSRLPTVQTLRI  294 (394)
Q Consensus       220 L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~-~p-~~l~~l~~L~~L~~~~~~--~~~~~~l~~l~~L~~L~l  294 (394)
                      ..+++.+ + .+..+|.++.  +++++|+++ +|.+.. ++ ..++.+++|+.|++.++.  ...+..+..+++|+.|++
T Consensus        10 ~~~v~Cs~~-~L~~iP~~lp--~~l~~L~Ls-~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~L   85 (192)
T d1w8aa_          10 GTTVDCTGR-GLKEIPRDIP--LHTTELLLN-DNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL   85 (192)
T ss_dssp             TTEEECTTS-CCSSCCSCCC--TTCSEEECC-SCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCEEEEeCC-CcCccCCCCC--CCCCEEEeC-CCCCcccccccccCCCceEeeeeccccccccccccccccccccceeee
Confidence            3567888 6 8889998764  689999999 988654 33 346788899999988877  445567778888888888


Q ss_pred             eecCCccccchhhhhcCCCCCcEEEecCCCCCCccCC-CCCCCCCCceEEEEecccCCCC
Q 037494          295 SGDLSHYHSGVSKSLCELHKLECLKLVNGSKLSRMVL-SEYQFPPSLIQLSLSNTELMED  353 (394)
Q Consensus       295 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~p-~~~~~l~~L~~L~L~~~~l~~~  353 (394)
                      ++|.  .....+..|.++++|+.|+|++ ++++.+.| ++.. +++|++|+|++|.+.+.
T Consensus        86 s~N~--l~~l~~~~F~~l~~L~~L~L~~-N~l~~i~~~~f~~-l~~L~~l~L~~N~~~~~  141 (192)
T d1w8aa_          86 GENK--IKEISNKMFLGLHQLKTLNLYD-NQISCVMPGSFEH-LNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             CSCC--CCEECSSSSTTCTTCCEEECCS-SCCCEECTTSSTT-CTTCCEEECTTCCBCCS
T ss_pred             cccc--ccccCHHHHhCCCcccccccCC-ccccccCHHHhcC-Ccccccccccccccccc
Confidence            8885  4433345678888888888888 77888834 6777 88888888888887543

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.15  E-value=2.4e-13  Score=114.15  Aligned_cols=109  Identities=18%  Similarity=0.149  Sum_probs=47.0

Q ss_pred             CCcccccCcccccEEecCCCCCccccccccCCCCCcEEEcc-cCCccccchhhccCccCcEEEeeCCCCCCCCCCCCCCC
Q 037494          186 QFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKLMHLNFDSITLPAPPKNYSSSL  264 (394)
Q Consensus       186 ~lp~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~l~~l  264 (394)
                      .++.+++.+++|++|++++|.|+.++ .++.+++|++|+++ | .+..+|.....+++|++|+++ +|.+..++ .+..+
T Consensus        39 ~l~~sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N-~i~~i~~~~~~~~~L~~L~l~-~N~i~~l~-~~~~l  114 (198)
T d1m9la_          39 KMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWIS-YNQIASLS-GIEKL  114 (198)
T ss_dssp             CCHHHHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEE-EECSCSSHHHHHHHCCEEECS-EEECCCHH-HHHHH
T ss_pred             hhhhHHhcccccceeECcccCCCCcc-cccCCccccChhhccc-ccccccccccccccccccccc-cccccccc-ccccc
Confidence            33344444444444444444444443 34444444444444 4 444444333333344444444 44333321 23333


Q ss_pred             CcCceeCccccC-CC--cchhcCCCCCCCeEEEeecC
Q 037494          265 KNLIFISALHPS-SC--TPDILSRLPTVQTLRISGDL  298 (394)
Q Consensus       265 ~~L~~L~~~~~~-~~--~~~~l~~l~~L~~L~l~~~~  298 (394)
                      ++|++|++.++. ..  ....+..+++|+.|++++|+
T Consensus       115 ~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~  151 (198)
T d1m9la_         115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSH
T ss_pred             ccccccccccchhccccccccccCCCccceeecCCCc
Confidence            444444444333 11  11345556666666666654

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.06  E-value=1.9e-12  Score=108.45  Aligned_cols=108  Identities=17%  Similarity=0.092  Sum_probs=87.8

Q ss_pred             hHHhccCCceeEEEcCCCCCCCCcccccCcccccEEecCCCCCccccccccCCCCCcEEEcc-cCCccccchhhccCccC
Q 037494          165 ENFCENFKYLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIPTLKCLPLLICTLLNLETLEMP-AGYIDHSPEGIWMMQKL  243 (394)
Q Consensus       165 ~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L  243 (394)
                      +.-+..+++|+.|++++|.++.++ .+..+++|++|++++|.++.+|.....+++|++|+++ | .+..++ .+..+++|
T Consensus        41 ~~sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N-~i~~l~-~~~~l~~L  117 (198)
T d1m9la_          41 DATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN-QIASLS-GIEKLVNL  117 (198)
T ss_dssp             HHHHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEE-ECCCHH-HHHHHHHS
T ss_pred             hhHHhcccccceeECcccCCCCcc-cccCCccccChhhcccccccccccccccccccccccccc-cccccc-cccccccc
Confidence            333488899999999999988875 4888899999999999888888655556789999999 8 888775 47888999


Q ss_pred             cEEEeeCCCCCCCCC--CCCCCCCcCceeCccccC
Q 037494          244 MHLNFDSITLPAPPK--NYSSSLKNLIFISALHPS  276 (394)
Q Consensus       244 ~~L~l~~~~~~~~~p--~~l~~l~~L~~L~~~~~~  276 (394)
                      +.|+++ +|.+..++  ..++.+++|+.|.+.++.
T Consensus       118 ~~L~L~-~N~i~~~~~~~~l~~l~~L~~L~L~~N~  151 (198)
T d1m9la_         118 RVLYMS-NNKITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             SEEEES-EEECCCHHHHHHHTTTTTCSEEEECSSH
T ss_pred             cccccc-cchhccccccccccCCCccceeecCCCc
Confidence            999999 88877665  357888999999988775

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.95  E-value=7.4e-11  Score=107.52  Aligned_cols=233  Identities=14%  Similarity=0.054  Sum_probs=138.2

Q ss_pred             CCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCCC-----------cccccCcccccEEecCCCCCcc
Q 037494          141 QSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQF-----------PPGLENLFLLKYLQLNIPTLKC  209 (394)
Q Consensus       141 ~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l-----------p~~i~~l~~L~~L~l~~~~l~~  209 (394)
                      .....++.|.+.++....-....+...+...+.|+.++++++.....           ...+...++|+.|++++|.+..
T Consensus        28 ~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~  107 (344)
T d2ca6a1          28 LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP  107 (344)
T ss_dssp             HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT
T ss_pred             hhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccccc
Confidence            34566777777766543211112233346677777887776654321           2334456778888887776543


Q ss_pred             -----ccccccCCCCCcEEEcc-cCCcccc-----ch---------hhccCccCcEEEeeCCCCCCC-----CCCCCCCC
Q 037494          210 -----LPLLICTLLNLETLEMP-AGYIDHS-----PE---------GIWMMQKLMHLNFDSITLPAP-----PKNYSSSL  264 (394)
Q Consensus       210 -----lp~~l~~l~~L~~L~l~-~~~l~~l-----p~---------~i~~l~~L~~L~l~~~~~~~~-----~p~~l~~l  264 (394)
                           +...+...++|++|+++ | .+..-     ..         .....+.|+.+.++ ++....     +...+...
T Consensus       108 ~~~~~l~~~l~~~~~L~~L~l~~n-~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~-~n~i~~~~~~~l~~~l~~~  185 (344)
T d2ca6a1         108 TAQEPLIDFLSKHTPLEHLYLHNN-GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICG-RNRLENGSMKEWAKTFQSH  185 (344)
T ss_dssp             TTHHHHHHHHHHCTTCCEEECCSS-CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECC-SSCCTGGGHHHHHHHHHHC
T ss_pred             ccccchhhhhcccccchheecccc-cccccccccccccccccccccccccCcccceeecc-cccccccccccccchhhhh
Confidence                 33445556778888887 6 43210     00         11245677788777 654321     11123445


Q ss_pred             CcCceeCccccCCC-------cchhcCCCCCCCeEEEeecC--CccccchhhhhcCCCCCcEEEecCCCCCCccC----C
Q 037494          265 KNLIFISALHPSSC-------TPDILSRLPTVQTLRISGDL--SHYHSGVSKSLCELHKLECLKLVNGSKLSRMV----L  331 (394)
Q Consensus       265 ~~L~~L~~~~~~~~-------~~~~l~~l~~L~~L~l~~~~--~~~~~~~~~~l~~~~~L~~L~l~~~~~L~~L~----p  331 (394)
                      +.|++|.+..+...       ....+...++|+.|++++|.  ......+...+...++|++|++++| .+..-.    -
T Consensus       186 ~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n-~i~~~g~~~l~  264 (344)
T d2ca6a1         186 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC-LLSARGAAAVV  264 (344)
T ss_dssp             TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTC-CCCHHHHHHHH
T ss_pred             hhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcC-ccCchhhHHHH
Confidence            67788877776611       22346677889999998886  1112335567778899999999884 233210    0


Q ss_pred             -CC--CCCCCCceEEEEecccCCCCCccc----c-cCCCCCCeEEEecccccCc
Q 037494          332 -SE--YQFPPSLIQLSLSNTELMEDPMPM----L-ERLPRLQVMKLKRNSYFGR  377 (394)
Q Consensus       332 -~~--~~~l~~L~~L~L~~~~l~~~~~~~----l-~~l~~L~~L~l~~n~~~~~  377 (394)
                       .+  .. .++|++|+|++|++.......    + .++++|++|++++|.+...
T Consensus       265 ~~l~~~~-~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~~  317 (344)
T d2ca6a1         265 DAFSKLE-NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE  317 (344)
T ss_dssp             HHHHTCS-SCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             HHhhhcc-CCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCCc
Confidence             11  11 467999999999875443332    3 2578999999988887653

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=1.9e-10  Score=108.14  Aligned_cols=107  Identities=17%  Similarity=0.032  Sum_probs=77.2

Q ss_pred             ceEEEEEEeCCcchhhc---cCCCCCccEEEEecCCCccchhcchhHHhccCCceeEEEcCCCCCCC-----Cccccc-C
Q 037494          123 TVKRCFILEDLIEFISL---EQSDMYLQSFLNHSSESDHLALIDCENFCENFKYLRVLNWGSAVLDQ-----FPPGLE-N  193 (394)
Q Consensus       123 ~~r~L~l~~~~~~~~~~---~~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~-----lp~~i~-~  193 (394)
                      +++.|.+..+...+...   ...++++++|.+.+|.........+...+..+++|+.|++++|.+..     +...+. .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            56778888666655322   26688999999999987532223344555899999999999998752     223332 2


Q ss_pred             cccccEEecCCCCCcc-----ccccccCCCCCcEEEcc-cCCc
Q 037494          194 LFLLKYLQLNIPTLKC-----LPLLICTLLNLETLEMP-AGYI  230 (394)
Q Consensus       194 l~~L~~L~l~~~~l~~-----lp~~l~~l~~L~~L~l~-~~~l  230 (394)
                      ..+|+.|++++|.++.     ++..+..+++|++|+++ | .+
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N-~i  124 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN-LL  124 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSS-BC
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccc-cc
Confidence            3479999999998863     45667889999999998 7 54

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=5.1e-09  Score=83.54  Aligned_cols=102  Identities=14%  Similarity=-0.029  Sum_probs=67.2

Q ss_pred             ceeEEEcCCCCCCCCcccccCcccccEEecCCC-CCccccc-cccCCCCCcEEEcc-cCCccccch-hhccCccCcEEEe
Q 037494          173 YLRVLNWGSAVLDQFPPGLENLFLLKYLQLNIP-TLKCLPL-LICTLLNLETLEMP-AGYIDHSPE-GIWMMQKLMHLNF  248 (394)
Q Consensus       173 ~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~-~l~~lp~-~l~~l~~L~~L~l~-~~~l~~lp~-~i~~l~~L~~L~l  248 (394)
                      ...+++.+++++.+.|..+..+++|+.|+++++ .++.++. .+.++++|+.|+++ | .+..+++ .+..+++|++|++
T Consensus         9 ~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~L   87 (156)
T d2ifga3           9 GSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNL   87 (156)
T ss_dssp             SSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEEC
T ss_pred             CCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeecc-ccCCcccccccccccccceec
Confidence            344566667666667777777777777777654 4776654 36677777777777 6 7777754 4667777777777


Q ss_pred             eCCCCCCCCCCCCCCCCcCceeCccccC
Q 037494          249 DSITLPAPPKNYSSSLKNLIFISALHPS  276 (394)
Q Consensus       249 ~~~~~~~~~p~~l~~l~~L~~L~~~~~~  276 (394)
                      + +|.+..+|.++-...+|+.|++.++.
T Consensus        88 s-~N~l~~l~~~~~~~~~l~~L~L~~Np  114 (156)
T d2ifga3          88 S-FNALESLSWKTVQGLSLQELVLSGNP  114 (156)
T ss_dssp             C-SSCCSCCCSTTTCSCCCCEEECCSSC
T ss_pred             c-CCCCcccChhhhccccccccccCCCc
Confidence            7 77777776654443455555555443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=1.1e-08  Score=81.66  Aligned_cols=84  Identities=14%  Similarity=0.040  Sum_probs=69.9

Q ss_pred             ccCCceeEEEcCCCC-CCCCc-ccccCcccccEEecCCCCCccccc-cccCCCCCcEEEcc-cCCccccchhhccCccCc
Q 037494          169 ENFKYLRVLNWGSAV-LDQFP-PGLENLFLLKYLQLNIPTLKCLPL-LICTLLNLETLEMP-AGYIDHSPEGIWMMQKLM  244 (394)
Q Consensus       169 ~~l~~L~~L~l~~~~-~~~lp-~~i~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~-~~~l~~lp~~i~~l~~L~  244 (394)
                      ..+++|+.|+++++. ++.++ +.+..+++|+.|++++|.|+.+++ .+..+++|++|+|+ | .+..+|.++....+|+
T Consensus        28 ~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~~~l~  106 (156)
T d2ifga3          28 PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN-ALESLSWKTVQGLSLQ  106 (156)
T ss_dssp             CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS-CCSCCCSTTTCSCCCC
T ss_pred             cCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCC-CCcccChhhhcccccc
Confidence            778889999997664 88776 568889999999999999998854 47789999999999 8 8899988777777899


Q ss_pred             EEEeeCCCCC
Q 037494          245 HLNFDSITLP  254 (394)
Q Consensus       245 ~L~l~~~~~~  254 (394)
                      +|+++ +|+.
T Consensus       107 ~L~L~-~Np~  115 (156)
T d2ifga3         107 ELVLS-GNPL  115 (156)
T ss_dssp             EEECC-SSCC
T ss_pred             ccccC-CCcc
Confidence            99998 7763

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.77  E-value=2.4e-10  Score=103.97  Aligned_cols=204  Identities=12%  Similarity=0.050  Sum_probs=141.2

Q ss_pred             hHHhccCCceeEEEcCCCCCC-----CCcccccCcccccEEecCCCCCcc-----------ccccccCCCCCcEEEcc-c
Q 037494          165 ENFCENFKYLRVLNWGSAVLD-----QFPPGLENLFLLKYLQLNIPTLKC-----------LPLLICTLLNLETLEMP-A  227 (394)
Q Consensus       165 ~~~~~~l~~L~~L~l~~~~~~-----~lp~~i~~l~~L~~L~l~~~~l~~-----------lp~~l~~l~~L~~L~l~-~  227 (394)
                      ..+ .....|+.|++++|.+.     .+...+...++|+.++++++....           +...+...++|+.|+++ |
T Consensus        25 ~~L-~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n  103 (344)
T d2ca6a1          25 AVL-LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN  103 (344)
T ss_dssp             HHH-HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred             HHH-hhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccc
Confidence            344 78899999999999875     344567788999999998765432           22335678899999999 7


Q ss_pred             CCccc-----cchhhccCccCcEEEeeCCCCCCCC-----CCC---------CCCCCcCceeCccccC------CCcchh
Q 037494          228 GYIDH-----SPEGIWMMQKLMHLNFDSITLPAPP-----KNY---------SSSLKNLIFISALHPS------SCTPDI  282 (394)
Q Consensus       228 ~~l~~-----lp~~i~~l~~L~~L~l~~~~~~~~~-----p~~---------l~~l~~L~~L~~~~~~------~~~~~~  282 (394)
                       .+..     +...+...++|++|+++ +|.....     ...         ....+.|+.+.+..+.      ......
T Consensus       104 -~i~~~~~~~l~~~l~~~~~L~~L~l~-~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~  181 (344)
T d2ca6a1         104 -AFGPTAQEPLIDFLSKHTPLEHLYLH-NNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT  181 (344)
T ss_dssp             -CCCTTTHHHHHHHHHHCTTCCEEECC-SSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred             -ccccccccchhhhhcccccchheecc-cccccccccccccccccccccccccccCcccceeecccccccccccccccch
Confidence             5543     44556678999999999 8763210     000         1234567778776655      123334


Q ss_pred             cCCCCCCCeEEEeecCCcccc-----chhhhhcCCCCCcEEEecCCCCCC-----ccCC-CCCCCCCCceEEEEecccCC
Q 037494          283 LSRLPTVQTLRISGDLSHYHS-----GVSKSLCELHKLECLKLVNGSKLS-----RMVL-SEYQFPPSLIQLSLSNTELM  351 (394)
Q Consensus       283 l~~l~~L~~L~l~~~~~~~~~-----~~~~~l~~~~~L~~L~l~~~~~L~-----~L~p-~~~~~l~~L~~L~L~~~~l~  351 (394)
                      +...+.|+.|++++|.  ...     .+...+...++|+.|++++++ +.     .+ . .+.. .++|++|+|++|.+.
T Consensus       182 l~~~~~L~~L~L~~n~--i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~-i~~~g~~~L-~~~l~~-~~~L~~L~Ls~n~i~  256 (344)
T d2ca6a1         182 FQSHRLLHTVKMVQNG--IRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSAL-AIALKS-WPNLRELGLNDCLLS  256 (344)
T ss_dssp             HHHCTTCCEEECCSSC--CCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHH-HHHGGG-CTTCCEEECTTCCCC
T ss_pred             hhhhhhhccccccccc--ccccccccchhhhhcchhhhccccccccc-ccccccccc-cccccc-cccchhhhhhcCccC
Confidence            5667899999999986  322     234557788999999999742 22     22 3 4555 789999999999986


Q ss_pred             CCCcccc----cC--CCCCCeEEEecccccC
Q 037494          352 EDPMPML----ER--LPRLQVMKLKRNSYFG  376 (394)
Q Consensus       352 ~~~~~~l----~~--l~~L~~L~l~~n~~~~  376 (394)
                      ......+    ..  .+.|++|++++|.+..
T Consensus       257 ~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~  287 (344)
T d2ca6a1         257 ARGAAAVVDAFSKLENIGLQTLRLQYNEIEL  287 (344)
T ss_dssp             HHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             chhhHHHHHHhhhccCCCCCEEECCCCcCCh
Confidence            5444333    22  4679999999998654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=3.9e-09  Score=98.99  Aligned_cols=85  Identities=15%  Similarity=0.044  Sum_probs=59.3

Q ss_pred             CCceEEEEEEeCCcchh-----hcc-CCCCCccEEEEecCCCccchhcchhHHh---c-cCCceeEEEcCCCCCCC----
Q 037494          121 LATVKRCFILEDLIEFI-----SLE-QSDMYLQSFLNHSSESDHLALIDCENFC---E-NFKYLRVLNWGSAVLDQ----  186 (394)
Q Consensus       121 ~~~~r~L~l~~~~~~~~-----~~~-~~~~~lr~L~l~~~~~~~~~~~~l~~~~---~-~l~~L~~L~l~~~~~~~----  186 (394)
                      .++++.+.+..+...+.     ... ...++|+.|.+.++...   +..+..+.   . ....|++|++++|.++.    
T Consensus        26 l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~---~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~  102 (460)
T d1z7xw1          26 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELG---DVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG  102 (460)
T ss_dssp             HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCH---HHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHH
T ss_pred             CCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCC---hHHHHHHHHHHhcCCCCCCEEECCCCCccccccc
Confidence            45678888985544321     111 57889999999988764   22222221   2 23579999999999863    


Q ss_pred             -CcccccCcccccEEecCCCCCc
Q 037494          187 -FPPGLENLFLLKYLQLNIPTLK  208 (394)
Q Consensus       187 -lp~~i~~l~~L~~L~l~~~~l~  208 (394)
                       ++..+..+++|++|++++|.+.
T Consensus       103 ~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1         103 VLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             HHHHHTTSCTTCCEEECCSSBCH
T ss_pred             cccchhhccccccccccccccch
Confidence             4567788999999999998764

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=3.4e-06  Score=67.07  Aligned_cols=83  Identities=24%  Similarity=0.105  Sum_probs=56.9

Q ss_pred             hHHhccCCceeEEEcCCCCCCCCc---ccccCcccccEEecCCCCCcccccc-ccCCCCCcEEEcc-cCCccccch----
Q 037494          165 ENFCENFKYLRVLNWGSAVLDQFP---PGLENLFLLKYLQLNIPTLKCLPLL-ICTLLNLETLEMP-AGYIDHSPE----  235 (394)
Q Consensus       165 ~~~~~~l~~L~~L~l~~~~~~~lp---~~i~~l~~L~~L~l~~~~l~~lp~~-l~~l~~L~~L~l~-~~~l~~lp~----  235 (394)
                      +.++..++.|++|++++|.++.++   ..+..+++|++|++++|.++.+++- .....+|+.|+++ | .+.....    
T Consensus        58 ~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~N-pl~~~~~~~~~  136 (162)
T d1koha1          58 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGN-SLSDTFRDQST  136 (162)
T ss_dssp             HHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTS-TTSSSSSSHHH
T ss_pred             HHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCC-CcCcCcccchh
Confidence            445567889999999999988653   4466788889999999888877641 1233467778887 6 5543221    


Q ss_pred             ----hhccCccCcEEEe
Q 037494          236 ----GIWMMQKLMHLNF  248 (394)
Q Consensus       236 ----~i~~l~~L~~L~l  248 (394)
                          .+..+|+|+.||-
T Consensus       137 y~~~i~~~~P~L~~LDg  153 (162)
T d1koha1         137 YISAIRERFPKLLRLDG  153 (162)
T ss_dssp             HHHHHHTTSTTCCEETT
T ss_pred             HHHHHHHHCCCCCEECc
Confidence                2446778887763

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=5.8e-07  Score=71.74  Aligned_cols=80  Identities=20%  Similarity=0.110  Sum_probs=51.0

Q ss_pred             cCcccccEEecCCCCCcccc---ccccCCCCCcEEEcc-cCCccccch-hhccCccCcEEEeeCCCCCCCCCCC------
Q 037494          192 ENLFLLKYLQLNIPTLKCLP---LLICTLLNLETLEMP-AGYIDHSPE-GIWMMQKLMHLNFDSITLPAPPKNY------  260 (394)
Q Consensus       192 ~~l~~L~~L~l~~~~l~~lp---~~l~~l~~L~~L~l~-~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~------  260 (394)
                      ..+++|++|++++|.|+.++   ..+..+++|+.|+++ | .+..+++ ......+|+.|++. +|++......      
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N-~i~~l~~l~~l~~~~L~~L~L~-~Npl~~~~~~~~~y~~  139 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGLKLEELWLD-GNSLSDTFRDQSTYIS  139 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTS-CCCCGGGHHHHTTCCCSSCCCT-TSTTSSSSSSHHHHHH
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccC-ccccchhhhhhhccccceeecC-CCCcCcCcccchhHHH
Confidence            45777888888888777653   335567788888888 7 7777764 22344567778887 7764433221      


Q ss_pred             --CCCCCcCceeCcc
Q 037494          261 --SSSLKNLIFISAL  273 (394)
Q Consensus       261 --l~~l~~L~~L~~~  273 (394)
                        +..+++|+.|+..
T Consensus       140 ~i~~~~P~L~~LDg~  154 (162)
T d1koha1         140 AIRERFPKLLRLDGH  154 (162)
T ss_dssp             HHHTTSTTCCEETTE
T ss_pred             HHHHHCCCCCEECcC
Confidence              3456666666543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.82  E-value=0.00077  Score=53.12  Aligned_cols=107  Identities=10%  Similarity=0.001  Sum_probs=54.5

Q ss_pred             CCCCccEEEEecCC-CccchhcchhHHhccCCceeEEEcCCCCCC-----CCcccccCcccccEEecCCCCCcc-----c
Q 037494          142 SDMYLQSFLNHSSE-SDHLALIDCENFCENFKYLRVLNWGSAVLD-----QFPPGLENLFLLKYLQLNIPTLKC-----L  210 (394)
Q Consensus       142 ~~~~lr~L~l~~~~-~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~-----~lp~~i~~l~~L~~L~l~~~~l~~-----l  210 (394)
                      ..+.|+.|.+.++. ...-....+-..+...+.|+.|++++|.+.     .+...+...+.|+.|++++|.+..     +
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            34567777776532 221001122222256666777777777654     222344445667777777666542     2


Q ss_pred             cccccCCCCCcEEEcc-cCCccc--------cchhhccCccCcEEEee
Q 037494          211 PLLICTLLNLETLEMP-AGYIDH--------SPEGIWMMQKLMHLNFD  249 (394)
Q Consensus       211 p~~l~~l~~L~~L~l~-~~~l~~--------lp~~i~~l~~L~~L~l~  249 (394)
                      -..+..-+.|++|+++ + ....        +...+..-++|+.|+++
T Consensus        93 ~~aL~~n~sL~~L~l~~n-~~~~~g~~~~~~l~~~L~~n~sL~~l~l~  139 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQ-RQSVLGNQVEMDMMMAIEENESLLRVGIS  139 (167)
T ss_dssp             HHHTTTTCCCSEEECCCC-SSCCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred             HHHHHhCCcCCEEECCCC-cCCCccHHHHHHHHHHHHhCCCccEeeCc
Confidence            2345555666666666 4 2222        22333445566666655

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.43  E-value=0.0019  Score=50.68  Aligned_cols=109  Identities=12%  Similarity=0.079  Sum_probs=64.0

Q ss_pred             CCCCCccEEEEecCC-CccchhcchhHHhccCCceeEEEcCCCCCC-----CCcccccCcccccEEecCCCCCc-----c
Q 037494          141 QSDMYLQSFLNHSSE-SDHLALIDCENFCENFKYLRVLNWGSAVLD-----QFPPGLENLFLLKYLQLNIPTLK-----C  209 (394)
Q Consensus       141 ~~~~~lr~L~l~~~~-~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~-----~lp~~i~~l~~L~~L~l~~~~l~-----~  209 (394)
                      ...+.|+.|.+.+.. ...-....+-..+...++|+.|++++|.+.     .+-..+...+.++.++++++.+.     .
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            345677777776633 321111122222367778888888888765     22344555677888888777654     3


Q ss_pred             ccccccCCCCCcEEEcc-cC-Ccc-----ccchhhccCccCcEEEee
Q 037494          210 LPLLICTLLNLETLEMP-AG-YID-----HSPEGIWMMQKLMHLNFD  249 (394)
Q Consensus       210 lp~~l~~l~~L~~L~l~-~~-~l~-----~lp~~i~~l~~L~~L~l~  249 (394)
                      +-..+...++|+.++|. +. .+.     .+...+...++|++|+++
T Consensus        94 l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~  140 (166)
T d1io0a_          94 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYH  140 (166)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred             HHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCc
Confidence            33556667777776665 31 332     234445567777777776

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.98  E-value=0.0035  Score=49.14  Aligned_cols=87  Identities=15%  Similarity=0.122  Sum_probs=58.4

Q ss_pred             hHHhccCCceeEEEcCCCC-CC-----CCcccccCcccccEEecCCCCCc-----cccccccCCCCCcEEEcc-cCCccc
Q 037494          165 ENFCENFKYLRVLNWGSAV-LD-----QFPPGLENLFLLKYLQLNIPTLK-----CLPLLICTLLNLETLEMP-AGYIDH  232 (394)
Q Consensus       165 ~~~~~~l~~L~~L~l~~~~-~~-----~lp~~i~~l~~L~~L~l~~~~l~-----~lp~~l~~l~~L~~L~l~-~~~l~~  232 (394)
                      ..+..+.+.|+.|+++++. +.     .+-..+...++|+.|++++|.+.     .+...+...+.|++|+++ | .+..
T Consensus         8 ~~l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n-~i~~   86 (167)
T d1pgva_           8 NRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN-FLTP   86 (167)
T ss_dssp             HHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCH
T ss_pred             HHHHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehh-hcch
Confidence            4454667899999998754 55     23355667788999999998775     223345556778888888 7 5543


Q ss_pred             -----cchhhccCccCcEEEeeCCCC
Q 037494          233 -----SPEGIWMMQKLMHLNFDSITL  253 (394)
Q Consensus       233 -----lp~~i~~l~~L~~L~l~~~~~  253 (394)
                           +-..+..-++|++|+++ ++.
T Consensus        87 ~g~~~l~~aL~~n~sL~~L~l~-~n~  111 (167)
T d1pgva_          87 ELLARLLRSTLVTQSIVEFKAD-NQR  111 (167)
T ss_dssp             HHHHHHHHHTTTTCCCSEEECC-CCS
T ss_pred             HHHHHHHHHHHhCCcCCEEECC-CCc
Confidence                 23345556777777777 554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=93.97  E-value=0.023  Score=43.99  Aligned_cols=84  Identities=15%  Similarity=0.140  Sum_probs=52.4

Q ss_pred             hHHhccCCceeEEEcCCC-CCC-----CCcccccCcccccEEecCCCCCcc-----ccccccCCCCCcEEEcc-cCCcc-
Q 037494          165 ENFCENFKYLRVLNWGSA-VLD-----QFPPGLENLFLLKYLQLNIPTLKC-----LPLLICTLLNLETLEMP-AGYID-  231 (394)
Q Consensus       165 ~~~~~~l~~L~~L~l~~~-~~~-----~lp~~i~~l~~L~~L~l~~~~l~~-----lp~~l~~l~~L~~L~l~-~~~l~-  231 (394)
                      ..+..+.+.|+.|+++++ .++     .+-.++...++|+.|++++|.+..     +-..+.....++.++++ | .+. 
T Consensus        10 ~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~-~~~~   88 (166)
T d1io0a_          10 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FISG   88 (166)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCH
T ss_pred             HHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccc-cccc
Confidence            445467788999999874 354     234556677888888888887652     22334556677777777 5 432 


Q ss_pred             ----ccchhhccCccCcEEEee
Q 037494          232 ----HSPEGIWMMQKLMHLNFD  249 (394)
Q Consensus       232 ----~lp~~i~~l~~L~~L~l~  249 (394)
                          .+...+...++|+.++++
T Consensus        89 ~g~~~l~~~l~~~~~L~~l~L~  110 (166)
T d1io0a_          89 SGILALVEALQSNTSLIELRID  110 (166)
T ss_dssp             HHHHHHHHGGGGCSSCCEEECC
T ss_pred             hhHHHHHHHHHhCccccEEeec
Confidence                223345555666665554