Citrus Sinensis ID: 037529

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130---
Protein Sequence
MIVSVILALFLPCAGMSLVFIVYLSLLWCASNDNDNNGDVRLPVKAAAEGGLSASELDKLPKISGKELVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSHFFNALESDNPC
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHcccEEcccccccccccEEccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHccEEEEccccccccEEEEHccccccccEEEcccccccccHHHHHHHHHcccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MIVSVILALFLPCAGMSLVFIVYLSLLWCasndndnngdvrlpvkaaaegglsaseldklpkisgkelvmgtecavcldeveseqparlvpgcnhgfhlqcadswlskhsvcpvcrakldshffnalesdnpc
Flexible Loop (DISEMBL)
MIVSVILALFLPCAGMSLVFIVYLSLLWCASNDNDNNGDVRLPVKAAAegglsaseldklpkisGKELVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSHffnalesdnpc
Low Complexity Region (SEG)
MIVSVILALFLPCAGMSLVFIVYLSLLWCASNDNDNNGDVRLPVKAAAEGGLSASELDKLPKISGKELVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSHFFNALESDNPC
Disordered region (IsUnstruct)
*IVSVILALFLPCAGMSLVFIVYLSLLWCASND*****************************ISGKELVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSHFFNA*******
Disordered Region (DISOPRED)
MIVSVILALFLPCAGMSLVFIVYLSLLW***************************ELDKLPKISGKELVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAK***************
Disordered Region (DISEMBL)
MIVSVILALFLPCAGMSLVFIVYLSLLWCASNDNDNNGDVRLPVKAAAEGGLSASELDKLPKISGKELVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSHFFNALESDNPC
Disordered Region (DISPRO)
MIVSVILALFLPCAGMSLVFIVYLSLLWCA********************GLSASELDKLPKISGKELVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLD*************
Transmembrane Helix (TMHMM)
ooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MIVSVILALFLPCAGMSLVFIVYLSLLWCASNDNDNNGDVRLPVKAAAEGGLSASELDKLPKISGKELVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSHFFNALESDNPC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	133	2.2.26 [Sep-21-2011]
Q8L9W3	163	E3 ubiquitin-protein liga	yes	no	1.0	0.815	0.522	1e-36
Q8W571	323	RING-H2 finger protein AT	no	no	0.849	0.349	0.343	2e-13
Q9ZV53	423	Putative RING-H2 finger p	no	no	0.563	0.177	0.430	2e-13
Q8LFY8	413	RING-H2 finger protein AT	no	no	0.398	0.128	0.528	3e-13
Q9C7I1	327	RING-H2 finger protein AT	no	no	0.766	0.311	0.338	6e-13
Q9LF64	362	RING-H2 finger protein AT	no	no	0.406	0.149	0.555	7e-13
Q9SN27	225	E3 ubiquitin-protein liga	no	no	0.827	0.488	0.352	8e-13
Q9LX93	301	E3 ubiquitin-protein liga	no	no	0.503	0.222	0.442	1e-12
O64763	378	E3 ubiquitin-protein liga	no	no	0.849	0.298	0.355	1e-12
Q9SL78	390	Putative RING-H2 finger p	no	no	0.864	0.294	0.315	2e-12

>sp|Q8L9W3|ATL23_ARATH E3 ubiquitin-protein ligase ATL23 OS=Arabidopsis thaliana GN=ATL23 PE=1 SV=2

 Score =  151 bits (382), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 71/136 (52%), Positives = 93/136 (68%), Gaps = 3/136 (2%)

Query: 1   MIVSVILALFLPCAGMSLVFIVYLSLLWCASNDNDNNGDVRLPVKAAAEGGLSASELDKL 60
           MI +V +AL LPC GM +VF++YL LLWC++           PVK     GLS  EL+K+
Sbjct: 28  MIATVFMALLLPCVGMCIVFLIYLFLLWCSTRRRIERLRFAEPVKPVTGKGLSVLELEKI 87

Query: 61  PKISGKELVM---GTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRA 117
           PK++G+EL +    TECAVCL+++ES Q  RLVPGCNHGFH  CAD+WLS H+VCPVCRA
Sbjct: 88  PKLTGRELAVIARSTECAVCLEDIESGQSTRLVPGCNHGFHQLCADTWLSNHTVCPVCRA 147

Query: 118 KLDSHFFNALESDNPC 133
           +L  +     E+ +PC
Sbjct: 148 ELAPNLPQCNENQSPC 163

E3 ubiquitin-protein ligase able to catalyze polyubiquitination with ubiquitin-conjugating enzyme E2 UBC8, UBC10, UBC11, UBC28 and UBC29 in vitro.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q8W571|ATL32_ARATH RING-H2 finger protein ATL32 OS=Arabidopsis thaliana GN=ATL32 PE=2 SV=3

 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/128 (34%), Positives = 71/128 (55%), Gaps = 15/128 (11%)

Query: 1   MIVSVILALFLPCAGMSLVFIVYLSLLWCASNDNDNNGDV---RLPVKAAAEGGLSASEL 57
            + +V++ LF    G+  V+I +     CA ++ D++      R    ++  GGL  + +
Sbjct: 48  TVFAVLVTLFF-LTGLLSVYIRH-----CARSNPDSSTRYFRNRANDGSSRRGGLDNAVV 101

Query: 58  DKLPKI---SGKELVMGT---ECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSV 111
           +  P     S KE  +G+   ECA+CL+E+E  +  RL+P CNH FH+ C D+WL  H+ 
Sbjct: 102 ESFPVFAYSSVKESKIGSKDLECAICLNELEDHETVRLLPICNHLFHIDCIDTWLYSHAT 161

Query: 112 CPVCRAKL 119
           CPVCR+ L
Sbjct: 162 CPVCRSNL 169

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZV53|ATL49_ARATH Putative RING-H2 finger protein ATL49 OS=Arabidopsis thaliana GN=ATL49 PE=3 SV=1

 Score = 73.9 bits (180), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/79 (43%), Positives = 47/79 (59%), Gaps = 4/79 (5%)

Query: 49  EGGLSASELDKLPKISGKELV----MGTECAVCLDEVESEQPARLVPGCNHGFHLQCADS 104
           + G+  S +D LP    K +V       +C VCL E E+E   RL+P C+H FH++C D+
Sbjct: 97  DSGVDQSLIDTLPVFHYKSIVGLKISPFDCPVCLCEFETEDKLRLLPKCSHAFHVECIDT 156

Query: 105 WLSKHSVCPVCRAKLDSHF 123
           WL  HS CP+CR+ L S F
Sbjct: 157 WLLSHSTCPLCRSNLLSGF 175

May be involved in female gametophyte development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LFY8|ATL54_ARATH RING-H2 finger protein ATL54 OS=Arabidopsis thaliana GN=ATL54 PE=2 SV=2

 Score = 73.9 bits (180), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/53 (52%), Positives = 38/53 (71%)

Query: 65  GKELVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRA 117
           G  L+  T+C VCL+E E ++  RL+P CNH FH+ C D+WLS H+ CP+CRA
Sbjct: 168 GDGLIERTDCPVCLNEFEEDESLRLLPKCNHAFHISCIDTWLSSHTNCPLCRA 220

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C7I1|ATL34_ARATH RING-H2 finger protein ATL34 OS=Arabidopsis thaliana GN=ATL34 PE=2 SV=1

 Score = 72.8 bits (177), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 41/121 (33%), Positives = 58/121 (47%), Gaps = 19/121 (15%)

Query: 18  LVFIVYLSLLWC-------------ASNDNDNNGDVRLPVKAAAEGGLSASELDKLP--- 61
           L+F +  S+L C              S+D +  G   +        GL    ++  P   
Sbjct: 53  LMFTLLFSMLACCVCYKYTNTSPHGTSSDTEEGGHGEVAFTRRTSRGLGKDVINSFPSFL 112

Query: 62  --KISGKELVMG-TECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAK 118
             ++ G ++  G  ECA+CL+E E E+  RL+P C+H FH  C D WLS  S CPVCRA 
Sbjct: 113 YSQVKGLKIGKGGVECAICLNEFEDEETLRLMPPCSHAFHASCIDVWLSSRSTCPVCRAS 172

Query: 119 L 119
           L
Sbjct: 173 L 173

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LF64|ATL52_ARATH RING-H2 finger protein ATL52 OS=Arabidopsis thaliana GN=ATL52 PE=2 SV=1

 Score = 72.4 bits (176), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 30/54 (55%), Positives = 37/54 (68%)

Query: 64  SGKELVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRA 117
           SG   V G++C+VCL E E  +  RL+P CNH FHL C D+WL  HS CP+CRA
Sbjct: 132 SGDGFVDGSDCSVCLSEFEENESLRLLPKCNHAFHLPCIDTWLKSHSNCPLCRA 185

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SN27|ATL59_ARATH E3 ubiquitin-protein ligase ATL59 OS=Arabidopsis thaliana GN=ATL59 PE=1 SV=1

 Score = 72.4 bits (176), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 42/119 (35%), Positives = 62/119 (52%), Gaps = 9/119 (7%)

Query: 10  FLPCAGMSLVFIVYLSLLWCASNDNDNNGDVRL----PVK---AAAEGGLSASELDKLPK 62
           F+ C  + ++ IV L L     N N N     L    P     + AE GLS    + LP 
Sbjct: 24  FIVCVPICVILIVLLVLYIMRRNSNTNVDWSSLGGFVPTNNNLSTAELGLSKDIREMLPI 83

Query: 63  ISGKE--LVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKL 119
           +  KE   V  T+C+VCL + ++E+  + +P C H FH++C D WL+ H+ CP+CR  L
Sbjct: 84  VIYKESFTVNDTQCSVCLGDYQAEEKLQQMPSCGHTFHMECIDLWLTSHTTCPLCRLSL 142

E3 ubiquitin-protein ligase able to catalyze polyubiquitination with ubiquitin-conjugating enzyme E2 UBC8, UBC10, UBC11, and UBC34 in vitro.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9LX93|ATL55_ARATH E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana GN=ATL55 PE=1 SV=1

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 46/70 (65%), Gaps = 3/70 (4%)

Query: 51  GLSASELDKLPKI---SGKELVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLS 107
           GL  S ++ +  +    G+ ++ GTEC+VCL+E E ++  RL+P C+H FHL C D+WL 
Sbjct: 109 GLHRSAINSITVVGFKKGEGIIDGTECSVCLNEFEEDESLRLLPKCSHAFHLNCIDTWLL 168

Query: 108 KHSVCPVCRA 117
            H  CP+CRA
Sbjct: 169 SHKNCPLCRA 178

E3 ubiquitin-protein ligase that may be involved in positive regulation of programmed cell death (PCD) by facilitating degradation of negative regulators of PCD. May be involved in the early steps of the plant defense signaling pathway. Undergoes auto-ubiquitination.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|O64763|ATL9_ARATH E3 ubiquitin-protein ligase ATL9 OS=Arabidopsis thaliana GN=ATL9 PE=1 SV=1

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/135 (35%), Positives = 63/135 (46%), Gaps = 22/135 (16%)

Query: 2   IVSVILALFLPCAGMSLVFIVYLSLLWCASNDNDNNGDVRLPVKAAAEG----------- 50
           +V VI  LFL      + F+V+ S+    SN   +   +     A AE            
Sbjct: 51  VVVVITVLFL-----VIFFMVFGSIFCRRSNAQFSRSSIFRSTDADAESQVVRIRRLTAR 105

Query: 51  GLSASELDKLPKISGKELVM------GTECAVCLDEVESEQPARLVPGCNHGFHLQCADS 104
           GL A  ++  P     E+        G ECAVCL E E ++  RL+P C H FH  C D 
Sbjct: 106 GLDAEAIETFPTFLYSEVKAVRIGKGGVECAVCLCEFEDDETLRLMPPCCHVFHADCVDV 165

Query: 105 WLSKHSVCPVCRAKL 119
           WLS+HS CP+CRA L
Sbjct: 166 WLSEHSTCPLCRADL 180

E3 ubiquitin-protein ligase able to catalyze polyubiquitination with ubiquitin-conjugating enzyme E2 UBC8 in vitro. May be involved in the early steps of the plant defense signaling pathway.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9SL78|ATL12_ARATH Putative RING-H2 finger protein ATL12 OS=Arabidopsis thaliana GN=ATL12 PE=3 SV=1

 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 70/133 (52%), Gaps = 18/133 (13%)

Query: 3   VSVILALFLPCAGMSLVFIVYLSLLWCASND----NDNNGD-VR-------LPVKAAAEG 50
           +++I  +F     ++ V +VY     C  ND     D++G+ +R       L  +++   
Sbjct: 41  LAIITGVFSIVFTLTFVLLVYAK---CFHNDLRSETDSDGERIRHDRLWQGLFNRSSRFS 97

Query: 51  GLSASELDKLP--KISG-KELVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLS 107
           GL    ++ LP  + S  K L  G EC+VCL + E  +  RL+P C H FH+ C D WL 
Sbjct: 98  GLDKKAIESLPFFRFSALKGLKQGLECSVCLSKFEDVEILRLLPKCRHAFHIGCIDQWLE 157

Query: 108 KHSVCPVCRAKLD 120
           +H+ CP+CR +++
Sbjct: 158 QHATCPLCRNRVN 170

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	133
255539054	175	ring finger protein, putative [Ricinus c	0.984	0.748	0.706	4e-50
224065747	165	predicted protein [Populus trichocarpa]	0.984	0.793	0.666	8e-47
224083141	134	predicted protein [Populus trichocarpa]	0.924	0.917	0.698	2e-46
356517704	130	PREDICTED: E3 ubiquitin-protein ligase A	0.977	1.0	0.661	3e-44
302141725	162	unnamed protein product [Vitis vinifera]	0.969	0.796	0.654	4e-44
225459738	129	PREDICTED: E3 ubiquitin-protein ligase A	0.969	1.0	0.654	8e-44
356509124	131	PREDICTED: E3 ubiquitin-protein ligase A	0.977	0.992	0.641	1e-42
356553343	128	PREDICTED: E3 ubiquitin-protein ligase A	0.962	1.0	0.624	4e-42
255647499	128	unknown [Glycine max]	0.962	1.0	0.624	3e-41
356564392	128	PREDICTED: E3 ubiquitin-protein ligase A	0.962	1.0	0.616	4e-40

>gi|255539054|ref|XP_002510592.1| ring finger protein, putative [Ricinus communis] gi|223551293|gb|EEF52779.1| ring finger protein, putative [Ricinus communis]

 Score =  202 bits (514), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 94/133 (70%), Positives = 117/133 (87%), Gaps = 2/133 (1%)

Query: 1   MIVSVILALFLPCAGMSLVFIVYLSLLWCASNDNDNNGDVRLPVKAAAEGGLSASELDKL 60
           M++SV LALFLPC GMS +F++Y+ LLW A+N + ++ ++  PVK +AE GLSAS+L+KL
Sbjct: 45  MLLSVFLALFLPCVGMSAIFLIYICLLWYAANHH-HHSEIVTPVKPSAEKGLSASDLEKL 103

Query: 61  PKISGKELVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLD 120
           PK++GKEL++GTECAVCLDE+ESEQPARLVPGCNHGFHL+CAD+WLS HSVCPVCRAKLD
Sbjct: 104 PKMTGKELILGTECAVCLDEIESEQPARLVPGCNHGFHLECADTWLSNHSVCPVCRAKLD 163

Query: 121 SHFFNALESDNPC 133
           S FFNA  +DNPC
Sbjct: 164 SQFFNA-STDNPC 175

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065747|ref|XP_002301951.1| predicted protein [Populus trichocarpa] gi|222843677|gb|EEE81224.1| predicted protein [Populus trichocarpa]

 Score =  191 bits (485), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 90/135 (66%), Positives = 111/135 (82%), Gaps = 4/135 (2%)

Query: 1   MIVSVILALFLPCAGMSLVFIVYLSLLWCASNDNDNNGDVRLPVKAAAEGGLSASELDKL 60
           M+VSV+ ALFLPC GMS+VF +Y+ LLW A+N+   N  + LPVK   E GLS+SEL+KL
Sbjct: 33  MLVSVLFALFLPCVGMSVVFFIYICLLWYAANNQPEN--IPLPVKTVTEKGLSSSELEKL 90

Query: 61  PKISGKELVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLD 120
           PK++GKELV+GTECAVCLD++ESEQ AR+VPGCNHGFHL+CAD+WLSKH VCPVCRAKLD
Sbjct: 91  PKVTGKELVLGTECAVCLDDIESEQLARIVPGCNHGFHLECADTWLSKHPVCPVCRAKLD 150

Query: 121 SHF--FNALESDNPC 133
           + F   +A   +NPC
Sbjct: 151 AQFSSTSASPENNPC 165

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224083141|ref|XP_002306953.1| predicted protein [Populus trichocarpa] gi|222856402|gb|EEE93949.1| predicted protein [Populus trichocarpa]

 Score =  190 bits (483), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 88/126 (69%), Positives = 106/126 (84%), Gaps = 3/126 (2%)

Query: 1   MIVSVILALFLPCAGMSLVFIVYLSLLWCASNDNDNNGDVRLPVKAAAEGGLSASELDKL 60
           M+VSV LALFLPCAGMS VFIVY+ LLW  +N   N  ++RLPVK   E GLS+SEL+KL
Sbjct: 1   MLVSVFLALFLPCAGMSAVFIVYICLLWYTAN---NQPEIRLPVKTVTEKGLSSSELEKL 57

Query: 61  PKISGKELVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLD 120
           PK++GKELV+GTECAVCLD++ESEQ AR+VPGCNHGFHL+CAD+WL+K  VCPVCRAKLD
Sbjct: 58  PKVTGKELVLGTECAVCLDDIESEQVARMVPGCNHGFHLECADTWLTKRPVCPVCRAKLD 117

Query: 121 SHFFNA 126
           +  F+ 
Sbjct: 118 AQLFST 123

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517704|ref|XP_003527526.1| PREDICTED: E3 ubiquitin-protein ligase ATL23-like [Glycine max]

 Score =  182 bits (463), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 88/133 (66%), Positives = 103/133 (77%), Gaps = 3/133 (2%)

Query: 1   MIVSVILALFLPCAGMSLVFIVYLSLLWCASNDNDNNGDVRLPVKAAAEGGLSASELDKL 60
           M+ SV+LALFLPC GMS VFIVY+ LLW A+   +       PVK   + GLSA EL+KL
Sbjct: 1   MLDSVLLALFLPCLGMSGVFIVYMCLLWYATTRRNQPPIDGQPVKPVTDKGLSALELEKL 60

Query: 61  PKISGKELVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLD 120
           PKI+GKELV+GTECAVCLDE+ESEQPAR+VPGCNHGFH+QCAD+WLSKH +CPVCR KLD
Sbjct: 61  PKITGKELVLGTECAVCLDEIESEQPARVVPGCNHGFHVQCADTWLSKHPICPVCRTKLD 120

Query: 121 SHFFNALESDNPC 133
              F    S +PC
Sbjct: 121 PQIFT---SQSPC 130

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302141725|emb|CBI18928.3| unnamed protein product [Vitis vinifera]

 Score =  182 bits (462), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 87/133 (65%), Positives = 109/133 (81%), Gaps = 4/133 (3%)

Query: 1   MIVSVILALFLPCAGMSLVFIVYLSLLWCASNDNDNNGDVRLPVKAAAEGGLSASELDKL 60
           M++S+ LALFLPCAGMS+VF+VY+ LLW ++       ++  PVK  +E GLSAS+LDKL
Sbjct: 34  MLLSIFLALFLPCAGMSVVFVVYICLLWYSALGQ--QPELPAPVKPESEKGLSASDLDKL 91

Query: 61  PKISGKELVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLD 120
           PK++GK+LV+G ECAVCLDE+ES+ PARL+PGCNHGFHLQCAD+WLSKHSVCP+CRA L 
Sbjct: 92  PKLAGKDLVVGAECAVCLDEIESDAPARLIPGCNHGFHLQCADTWLSKHSVCPLCRAILA 151

Query: 121 SHFFNALESDNPC 133
             FFN   S+NPC
Sbjct: 152 PEFFNT--SENPC 162

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459738|ref|XP_002285896.1| PREDICTED: E3 ubiquitin-protein ligase ATL23 [Vitis vinifera]

 Score =  181 bits (459), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 87/133 (65%), Positives = 109/133 (81%), Gaps = 4/133 (3%)

Query: 1   MIVSVILALFLPCAGMSLVFIVYLSLLWCASNDNDNNGDVRLPVKAAAEGGLSASELDKL 60
           M++S+ LALFLPCAGMS+VF+VY+ LLW ++       ++  PVK  +E GLSAS+LDKL
Sbjct: 1   MLLSIFLALFLPCAGMSVVFVVYICLLWYSALGQ--QPELPAPVKPESEKGLSASDLDKL 58

Query: 61  PKISGKELVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLD 120
           PK++GK+LV+G ECAVCLDE+ES+ PARL+PGCNHGFHLQCAD+WLSKHSVCP+CRA L 
Sbjct: 59  PKLAGKDLVVGAECAVCLDEIESDAPARLIPGCNHGFHLQCADTWLSKHSVCPLCRAILA 118

Query: 121 SHFFNALESDNPC 133
             FFN   S+NPC
Sbjct: 119 PEFFNT--SENPC 129

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509124|ref|XP_003523302.1| PREDICTED: E3 ubiquitin-protein ligase ATL23-like [Glycine max]

 Score =  177 bits (449), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 86/134 (64%), Positives = 103/134 (76%), Gaps = 4/134 (2%)

Query: 1   MIVSVILALFLPCAGMSLVFIVYLSLLWCASNDNDNNGDVR-LPVKAAAEGGLSASELDK 59
           M+ SV+LALFLPC GMS VFIVY+ LLW A+  +     +   PVK  A+ GLSA EL+K
Sbjct: 1   MLDSVLLALFLPCLGMSGVFIVYMCLLWYATTRHHQQPPIDGQPVKPVADKGLSALELEK 60

Query: 60  LPKISGKELVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKL 119
           LP+++GKELV+G ECAVCLDE+ESEQPARLVPGCNHGFH+ CAD+WLSKH +CPVCR KL
Sbjct: 61  LPRVTGKELVLGNECAVCLDEIESEQPARLVPGCNHGFHVHCADTWLSKHPLCPVCRTKL 120

Query: 120 DSHFFNALESDNPC 133
           D   F    S +PC
Sbjct: 121 DPQIFT---SQSPC 131

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553343|ref|XP_003545016.1| PREDICTED: E3 ubiquitin-protein ligase ATL23-like [Glycine max]

 Score =  176 bits (445), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 83/133 (62%), Positives = 106/133 (79%), Gaps = 5/133 (3%)

Query: 1   MIVSVILALFLPCAGMSLVFIVYLSLLWCASNDNDNNGDVRLPVKAAAEGGLSASELDKL 60
           M+ SV+LALFLPC GMS VFIVY+ LLW A+N   ++ D  LP K  ++ G+S S+LDKL
Sbjct: 1   MLDSVLLALFLPCLGMSAVFIVYMCLLWYATN---HHSDPALPAKPVSDTGISPSQLDKL 57

Query: 61  PKISGKELVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLD 120
           P+I+GK+L+MG ECAVCLDE+ +EQP R+VPGCNH FHL+CAD+WLSKH +CP+CRAKLD
Sbjct: 58  PRITGKDLLMGNECAVCLDEIGTEQPVRVVPGCNHAFHLECADTWLSKHPLCPLCRAKLD 117

Query: 121 SHFFNALESDNPC 133
              F++  S NPC
Sbjct: 118 PSLFSS--SQNPC 128

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255647499|gb|ACU24213.1| unknown [Glycine max]

 Score =  173 bits (438), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 83/133 (62%), Positives = 102/133 (76%), Gaps = 5/133 (3%)

Query: 1   MIVSVILALFLPCAGMSLVFIVYLSLLWCASNDNDNNGDVRLPVKAAAEGGLSASELDKL 60
           M+ SV+LALFLPC GMS VFIVY+ LLW A+N   ++ D  LP K  ++ G+S S+LDKL
Sbjct: 1   MLDSVLLALFLPCLGMSAVFIVYMCLLWYATN---HHSDPALPAKPVSDTGISPSQLDKL 57

Query: 61  PKISGKELVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLD 120
           P+I+GK+L+MG ECAVCLDE+ +EQP R+VPGCNH FHL+CAD+WLSKH  CP CRAKLD
Sbjct: 58  PRITGKDLLMGNECAVCLDEIGTEQPVRVVPGCNHAFHLECADTWLSKHPFCPFCRAKLD 117

Query: 121 SHFFNALESDNPC 133
              F    S NPC
Sbjct: 118 PSLF--FFSQNPC 128

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564392|ref|XP_003550438.1| PREDICTED: E3 ubiquitin-protein ligase ATL23-like [Glycine max]

 Score =  169 bits (427), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 82/133 (61%), Positives = 102/133 (76%), Gaps = 5/133 (3%)

Query: 1   MIVSVILALFLPCAGMSLVFIVYLSLLWCASNDNDNNGDVRLPVKAAAEGGLSASELDKL 60
           M+ SV+LA+FLPC GMS   IVY+ LL+      D+  D  LP K A++ GLS S+LDKL
Sbjct: 1   MLGSVLLAVFLPCIGMSAALIVYMCLLY---YFTDHFSDPALPAKPASDSGLSPSQLDKL 57

Query: 61  PKISGKELVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLD 120
           P+I+GKELVMG ECAVCLD + +EQPARLVPGCNH FHL+CAD+WLS+H +CP+CRAKLD
Sbjct: 58  PRITGKELVMGNECAVCLDHIGTEQPARLVPGCNHAFHLECADTWLSEHPLCPLCRAKLD 117

Query: 121 SHFFNALESDNPC 133
              F++  S NPC
Sbjct: 118 PALFSS--SQNPC 128

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	133
TAIR|locus:2165735	163	AT5G42200 [Arabidopsis thalian	1.0	0.815	0.522	7.2e-36
TAIR|locus:2181032	159	DAFL2 "DAF-Like gene 2" [Arabi	0.834	0.698	0.386	6.9e-15
TAIR|locus:2122378	357	AT4G09130 [Arabidopsis thalian	0.804	0.299	0.363	7.4e-15
TAIR|locus:2028436	219	AT1G49230 [Arabidopsis thalian	0.842	0.511	0.375	1.1e-14
TAIR|locus:2090980	204	AT3G14320 [Arabidopsis thalian	0.864	0.563	0.303	1.4e-14
TAIR|locus:2140069	323	AT4G40070 [Arabidopsis thalian	0.842	0.346	0.346	1.8e-14
TAIR|locus:2011686	185	ATL8 [Arabidopsis thaliana (ta	0.812	0.583	0.371	1.8e-14
TAIR|locus:2124700	225	AT4G10160 [Arabidopsis thalian	0.827	0.488	0.352	1.8e-14
TAIR|locus:2096444	356	AT3G03550 [Arabidopsis thalian	0.669	0.25	0.375	3.4e-14
TAIR|locus:2142449	301	RING1 [Arabidopsis thaliana (t	0.503	0.222	0.442	3.6e-14

TAIR|locus:2165735 AT5G42200 [Arabidopsis thaliana (taxid:3702)]

 Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
 Identities = 71/136 (52%), Positives = 93/136 (68%)

Query:     1 MIVSVILALFLPCAGMSLVFIVYLSLLWCASNDNDNNGDVRLPVKAAAEGGLSASELDKL 60
             MI +V +AL LPC GM +VF++YL LLWC++           PVK     GLS  EL+K+
Sbjct:    28 MIATVFMALLLPCVGMCIVFLIYLFLLWCSTRRRIERLRFAEPVKPVTGKGLSVLELEKI 87

Query:    61 PKISGKELVM---GTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRA 117
             PK++G+EL +    TECAVCL+++ES Q  RLVPGCNHGFH  CAD+WLS H+VCPVCRA
Sbjct:    88 PKLTGRELAVIARSTECAVCLEDIESGQSTRLVPGCNHGFHQLCADTWLSNHTVCPVCRA 147

Query:   118 KLDSHFFNALESDNPC 133
             +L  +     E+ +PC
Sbjct:   148 ELAPNLPQCNENQSPC 163

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

TAIR|locus:2181032 DAFL2 "DAF-Like gene 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
 Identities = 46/119 (38%), Positives = 58/119 (48%)

Query:     5 VILALFLPCAGMSLVFIVYL-SLLWCASNDNDNNGDVRLPVKAAAEGGLSASELDKLPKI 63
             +ILA  L CA   L+  + L S+L CA                A   GL   EL K P  
Sbjct:    36 IILAALL-CA---LILALGLNSILRCAMRCGFGLSSSAAAGTVADRAGLKKRELKKFPVA 91

Query:    64 ---SGKELVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKL 119
                SG+  +  TECA+CL E    +  R++P CNH FH+ C D+WL  HS CP CR  L
Sbjct:    92 EYGSGEVKIAATECAICLGEFADGERVRVLPPCNHSFHMSCIDTWLVSHSSCPNCRHSL 150

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2122378 AT4G09130 [Arabidopsis thaliana (taxid:3702)]

 Score = 193 (73.0 bits), Expect = 7.4e-15, P = 7.4e-15
 Identities = 44/121 (36%), Positives = 59/121 (48%)

Query:     5 VILALFLPCAGMSLVFIVYLSLLWCASNDNDNNGDVRLPVKAAAEGGLSASELDKLPKIS 64
             V+L+LFL      L+ +VY     C   +N+  G   L   +    G+    ++  P   
Sbjct:    53 VLLSLFL------LLLVVYCLNYGCCIEENETGGHEVL--HSRVRRGIDKDVIESFPAFL 104

Query:    65 GKELVM------GTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAK 118
               E+        G ECA+CL E E E+P R +P C+H FH  C D WLS  S CPVCRA 
Sbjct:   105 YSEVKAFKIGNGGVECAICLCEFEDEEPLRWMPPCSHTFHANCIDEWLSSRSTCPVCRAN 164

Query:   119 L 119
             L
Sbjct:   165 L 165

GO:0005576 "extracellular region" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2028436 AT1G49230 [Arabidopsis thaliana (taxid:3702)]

 Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
 Identities = 45/120 (37%), Positives = 66/120 (55%)

Query:     1 MIVSVILALFLPCAGMSLVFIVYLSLLWCASNDNDNNGDVRLPVKAAAEGGLSASELDKL 60
             M++SV+L   L C+ + L  I+  +L  C++      G    PV+     G+    L   
Sbjct:    58 MVLSVLLCA-LVCS-LGLNSIIRCALR-CSNLVPSEAGGDNYPVRLT-NTGVKRKALKSF 113

Query:    61 PKIS-GKELVM-G--TECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCR 116
               +S   EL + G  TECA+CL E  +E+  +L+P C+HGFH++C D WLS HS CP CR
Sbjct:   114 QTVSYSTELNLPGLDTECAICLSEFVAEERVKLLPTCHHGFHVRCIDKWLSSHSSCPTCR 173

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2090980 AT3G14320 [Arabidopsis thaliana (taxid:3702)]

 Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
 Identities = 37/122 (30%), Positives = 64/122 (52%)

Query:     3 VSVILALFLPCAGMSLVFIVYLSLLWCA---SNDNDNNGDVRLPVKAAAEGGLSASELDK 59
             ++++ A F    G+S V +  +   +      +D+DNN D  + +      G+    L  
Sbjct:    14 INIVFAFFF--FGISAVVVSCIIKCYNTHDDDHDHDNNNDGHVSITIKERVGIKPYVLRS 71

Query:    60 LPKI--SGKELVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRA 117
             +P +  + K+     EC VCL E+     AR++P C+H FH++C DSWL  +S CP+CR 
Sbjct:    72 IPIVDFNTKDFKYVLECVVCLSELADGDKARVLPSCDHWFHVECIDSWLQSNSTCPICRK 131

Query:   118 KL 119
             ++
Sbjct:   132 RV 133

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2140069 AT4G40070 [Arabidopsis thaliana (taxid:3702)]

 Score = 188 (71.2 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 44/127 (34%), Positives = 71/127 (55%)

Query:     2 IVSVILALFLPCAGMSLVFIVYLSLLWCASNDNDNNGDV---RLPVKAAAEGGLSASELD 58
             + +V++ LF    G+  V+I +     CA ++ D++      R    ++  GGL  + ++
Sbjct:    49 VFAVLVTLFF-LTGLLSVYIRH-----CARSNPDSSTRYFRNRANDGSSRRGGLDNAVVE 102

Query:    59 KLPKI---SGKELVMGT---ECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVC 112
               P     S KE  +G+   ECA+CL+E+E  +  RL+P CNH FH+ C D+WL  H+ C
Sbjct:   103 SFPVFAYSSVKESKIGSKDLECAICLNELEDHETVRLLPICNHLFHIDCIDTWLYSHATC 162

Query:   113 PVCRAKL 119
             PVCR+ L
Sbjct:   163 PVCRSNL 169

GO:0005576 "extracellular region" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2011686 ATL8 [Arabidopsis thaliana (taxid:3702)]

 Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 45/121 (37%), Positives = 63/121 (52%)

Query:     5 VILALFLPCAGMSLVFIVYLS-LLWCASNDNDNNGD-VRLPVKAAAEGGLSASELDKLPK 62
             +ILA+ L CA   ++ ++ +S   W     + N  D    P  AAA  GL    L  LPK
Sbjct:    30 LILAVLL-CALTCIIGLIAVSRCAWLRRIASRNRSDQTHPPPVAAANKGLKKKVLRSLPK 88

Query:    63 IS-------GKELVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVC 115
             ++        ++LV   ECA+CL E  +    R++P C HGFH+ C D+WL  HS CP C
Sbjct:    89 LTYSPDSPPAEKLV---ECAICLTEFAAGDELRVLPQCGHGFHVSCIDTWLGSHSSCPSC 145

Query:   116 R 116
             R
Sbjct:   146 R 146

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

TAIR|locus:2124700 AT4G10160 [Arabidopsis thaliana (taxid:3702)]

 Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 42/119 (35%), Positives = 62/119 (52%)

Query:    10 FLPCAGMSLVFIVYLSLLWCASNDNDNNGDVRL----PVK---AAAEGGLSASELDKLPK 62
             F+ C  + ++ IV L L     N N N     L    P     + AE GLS    + LP 
Sbjct:    24 FIVCVPICVILIVLLVLYIMRRNSNTNVDWSSLGGFVPTNNNLSTAELGLSKDIREMLPI 83

Query:    63 ISGKE--LVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKL 119
             +  KE   V  T+C+VCL + ++E+  + +P C H FH++C D WL+ H+ CP+CR  L
Sbjct:    84 VIYKESFTVNDTQCSVCLGDYQAEEKLQQMPSCGHTFHMECIDLWLTSHTTCPLCRLSL 142

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

TAIR|locus:2096444 AT3G03550 [Arabidopsis thaliana (taxid:3702)]

 Score = 187 (70.9 bits), Expect = 3.4e-14, P = 3.4e-14
 Identities = 36/96 (37%), Positives = 54/96 (56%)

Query:    28 WCASNDNDNNGDVRLPVKAAAEGG---LSASELDKLPKISGKEL---VMGTECAVCLDEV 81
             W  +N+N+NNG    P +    GG   L  S +  +     +++   V  ++C+VCL E 
Sbjct:   108 WQGTNNNNNNGATN-PNQTIGGGGGDGLDESLIKSITVYKYRKMDGFVESSDCSVCLSEF 166

Query:    82 ESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRA 117
             +  +  RL+P CNH FH+ C D+WL  HS CP+CRA
Sbjct:   167 QENESLRLLPKCNHAFHVPCIDTWLKSHSNCPLCRA 202

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0080167 "response to karrikin" evidence=IEP

TAIR|locus:2142449 RING1 [Arabidopsis thaliana (taxid:3702)]

 Score = 184 (69.8 bits), Expect = 3.6e-14, P = 3.6e-14
 Identities = 31/70 (44%), Positives = 46/70 (65%)

Query:    51 GLSASELDKLPKIS---GKELVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLS 107
             GL  S ++ +  +    G+ ++ GTEC+VCL+E E ++  RL+P C+H FHL C D+WL 
Sbjct:   109 GLHRSAINSITVVGFKKGEGIIDGTECSVCLNEFEEDESLRLLPKCSHAFHLNCIDTWLL 168

Query:   108 KHSVCPVCRA 117
              H  CP+CRA
Sbjct:   169 SHKNCPLCRA 178

GO:0005576 "extracellular region" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0010200 "response to chitin" evidence=IEP

GO:0002238 "response to molecule of fungal origin" evidence=IEP

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009617 "response to bacterium" evidence=IEP;RCA

GO:0012501 "programmed cell death" evidence=IC

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0043068 "positive regulation of programmed cell death" evidence=IMP

GO:0051865 "protein autoubiquitination" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8L9W3	ATL23_ARATH	6, ., 3, ., 2, ., -	0.5220	1.0	0.8159	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	133
pfam13639	46	pfam13639, zf-RING_2, Ring finger domain	5e-11
COG5540	374	COG5540, COG5540, RING-finger-containing ubiquitin	8e-11
cd00162	45	cd00162, RING, RING-finger (Really Interesting New	4e-08
PHA02929	238	PHA02929, PHA02929, N1R/p28-like protein; Provisio	1e-07
COG5219	1525	COG5219, COG5219, Uncharacterized conserved protei	2e-07
pfam12678	73	pfam12678, zf-rbx1, RING-H2 zinc finger	6e-07
COG5243	491	COG5243, HRD1, HRD ubiquitin ligase complex, ER me	7e-06
pfam13923	45	pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI	1e-05
COG5194	88	COG5194, APC11, Component of SCF ubiquitin ligase	1e-04
smart00184	40	smart00184, RING, Ring finger	0.001

>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain

 Score = 53.6 bits (129), Expect = 5e-11
 Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 73  ECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAK 118
           EC +CLDE E  +   ++P C H FH +C D WL   + CP+CRA 
Sbjct: 2   ECPICLDEFEPGEEVVVLP-CGHVFHKECLDKWLRSSNTCPLCRAP 46

Length = 46

>gnl|CDD|227827 COG5540, COG5540, RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

 Score = 57.7 bits (139), Expect = 8e-11
 Identities = 27/101 (26%), Positives = 40/101 (39%), Gaps = 9/101 (8%)

Query: 20  FIVYLSLLWCASNDNDNNGDVRLPVKAAAEGGLSASELDKLPKISGKELVMGTECAVCLD 79
           F + L +     +    +    +P             L  L      E   G ECA+C+ 
Sbjct: 279 FNIILEI-QINFDVGFYSSSEAIPTTTTKG------SLKPLSIERAVEADKGVECAICMS 331

Query: 80  EVESEQPARLVPGCNHGFHLQCADSWLSKHSV-CPVCRAKL 119
                   R++P C+H FH+ C D WL  +S  CPVCR  +
Sbjct: 332 NFIKNDRLRVLP-CDHRFHVGCVDKWLLGYSNKCPVCRTAI 371

Length = 374

>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

 Score = 46.3 bits (110), Expect = 4e-08
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 4/48 (8%)

Query: 73  ECAVCLDEVESEQPARLVPGCNHGFHLQCADSWL-SKHSVCPVCRAKL 119
           EC +CL+E        ++  C H F   C D WL S  + CP+CR  +
Sbjct: 1   ECPICLEEFREP---VVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45

Length = 45

>gnl|CDD|222944 PHA02929, PHA02929, N1R/p28-like protein; Provisional

 Score = 48.6 bits (116), Expect = 1e-07
 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 8/64 (12%)

Query: 71  GTECAVCLDEV-ESEQPAR---LVPGCNHGFHLQCADSWLSKHSVCPVCRAKL----DSH 122
             ECA+C+++V + E       ++  CNH F ++C D W  + + CPVCR        S 
Sbjct: 174 DKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFISVIKSR 233

Query: 123 FFNA 126
           FF  
Sbjct: 234 FFTK 237

Length = 238

>gnl|CDD|227544 COG5219, COG5219, Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

 Score = 48.5 bits (115), Expect = 2e-07
 Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 10/65 (15%)

Query: 62   KISGKELVMGTECAVC---LDEVESEQPARLVPGCNHGFHLQCADSWL--SKHSVCPVCR 116
            K SG E     ECA+C   LD V+   P++    C + FH +C   W   S  S CP+CR
Sbjct: 1465 KFSGHE-----ECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCR 1519

Query: 117  AKLDS 121
            +++  
Sbjct: 1520 SEITF 1524

Length = 1525

>gnl|CDD|221705 pfam12678, zf-rbx1, RING-H2 zinc finger

 Score = 44.0 bits (104), Expect = 6e-07
 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 9/52 (17%)

Query: 74  CAVCLDEVESEQPARLVPG---------CNHGFHLQCADSWLSKHSVCPVCR 116
           CA+C +  +   P    PG         C H FHL C   WL   + CP+CR
Sbjct: 22  CAICRNHFDGTCPECKSPGDDCPVVWGECGHAFHLHCISRWLKTRNTCPLCR 73

There are 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding. The protein, of which this domain is the conserved region, participates in diverse functions relevant to chromosome metabolism and cell cycle control. Length = 73

>gnl|CDD|227568 COG5243, HRD1, HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

 Score = 43.4 bits (102), Expect = 7e-06
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 13/57 (22%)

Query: 74  CAVCLDEV-----------ESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKL 119
           C +C+DE+               P RL   C H  HL C  +WL +   CP+CR  +
Sbjct: 290 CTICMDEMFHPDHEPLPRGLDMTPKRLP--CGHILHLHCLKNWLERQQTCPICRRPV 344

Length = 491

>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger)

 Score = 39.8 bits (93), Expect = 1e-05
 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 3/45 (6%)

Query: 73  ECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRA 117
           EC +CLD +    P  L P C H F  +C   +L K S CP+CR 
Sbjct: 4   ECPICLDLLR--DPVVLTP-CGHVFCRECILRYLKKKSKCPICRT 45

Length = 45

>gnl|CDD|227521 COG5194, APC11, Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

 Score = 38.3 bits (89), Expect = 1e-04
 Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 69  VMGTECAVCLDEVESEQPARLVPG-CNHGFHLQCADSWLSKHSVCPVCRAK 118
           +MGT C  C   +       +V G CNH FH  C   WL    VCP+ R  
Sbjct: 30  IMGT-CPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQT 79

Length = 88

>gnl|CDD|214546 smart00184, RING, Ring finger

 Score = 34.4 bits (79), Expect = 0.001
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 4/43 (9%)

Query: 74  CAVCLDEVESEQPARLVPGCNHGFHLQCADSWL-SKHSVCPVC 115
           C +CL+E    +   ++P C H F   C   WL S ++ CP+C
Sbjct: 1   CPICLEEYL--KDPVILP-CGHTFCRSCIRKWLESGNNTCPIC 40

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s). Length = 40

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	133
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	99.89
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	99.8
PHA02929	238	N1R/p28-like protein; Provisional	99.65
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	99.63
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	99.63
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	99.55
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	99.52
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	99.49
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	99.43
KOG1734	328	consensus Predicted RING-containing E3 ubiquitin l	99.43
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	99.43
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	99.4
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	99.36
PF14634	44	zf-RING_5: zinc-RING finger domain	99.35
PHA02926	242	zinc finger-like protein; Provisional	99.33
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	99.29
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	99.28
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	99.27
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	99.26
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	99.24
KOG0828	636	consensus Predicted E3 ubiquitin ligase [Posttrans	99.21
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	99.18
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	99.14
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	99.06
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	99.06
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	99.0
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	98.95
KOG2930	114	consensus SCF ubiquitin ligase, Rbx1 component [Po	98.94
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	98.89
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	98.88
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	98.78
KOG1493	84	consensus Anaphase-promoting complex (APC), subuni	98.77
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	98.76
KOG4265	349	consensus Predicted E3 ubiquitin ligase [Posttrans	98.71
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	98.7
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	98.7
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	98.61
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	98.6
KOG2177	386	consensus Predicted E3 ubiquitin ligase [Posttrans	98.59
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	98.56
KOG4172	62	consensus Predicted E3 ubiquitin ligase [Posttrans	98.54
COG5219	1525	Uncharacterized conserved protein, contains RING Z	98.48
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.45
KOG0824	324	consensus Predicted E3 ubiquitin ligase [Posttrans	98.42
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	98.4
KOG0311	381	consensus Predicted E3 ubiquitin ligase [Posttrans	98.34
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	98.29
KOG4445	368	consensus Uncharacterized conserved protein, conta	98.27
KOG0825	1134	consensus PHD Zn-finger protein [General function	98.25
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	98.24
KOG2879	298	consensus Predicted E3 ubiquitin ligase [Posttrans	98.01
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	97.95
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	97.92
PF05883	134	Baculo_RING: Baculovirus U-box/Ring-like domain; I	97.87
KOG0826	357	consensus Predicted E3 ubiquitin ligase involved i	97.84
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	97.83
KOG1941	518	consensus Acetylcholine receptor-associated protei	97.83
KOG1428	3738	consensus Inhibitor of type V adenylyl cyclases/Ne	97.74
KOG0297	391	consensus TNF receptor-associated factor [Signal t	97.71
KOG3970	299	consensus Predicted E3 ubiquitin ligase [Posttrans	97.7
COG5152	259	Uncharacterized conserved protein, contains RING a	97.6
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	97.55
KOG1952	950	consensus Transcription factor NF-X1, contains NFX	97.52
KOG2660	331	consensus Locus-specific chromosome binding protei	97.49
KOG4692	489	consensus Predicted E3 ubiquitin ligase [Posttrans	97.48
KOG0801	205	consensus Predicted E3 ubiquitin ligase [Posttrans	97.47
PF12906	47	RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.	97.45
PHA02862	156	5L protein; Provisional	97.4
KOG3039	303	consensus Uncharacterized conserved protein [Funct	97.37
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	97.37
KOG1571	355	consensus Predicted E3 ubiquitin ligase [Posttrans	97.35
PF10367	109	Vps39_2: Vacuolar sorting protein 39 domain 2; Int	97.32
KOG4275	350	consensus Predicted E3 ubiquitin ligase [Posttrans	97.24
KOG1814	445	consensus Predicted E3 ubiquitin ligase [Posttrans	97.22
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	97.17
PHA03096	284	p28-like protein; Provisional	97.16
PHA02825	162	LAP/PHD finger-like protein; Provisional	97.15
COG5236	493	Uncharacterized conserved protein, contains RING Z	97.13
KOG4739	233	consensus Uncharacterized protein involved in syna	97.12
KOG4185	296	consensus Predicted E3 ubiquitin ligase [Posttrans	97.06
KOG1002	791	consensus Nucleotide excision repair protein RAD16	97.03
KOG1940	276	consensus Zn-finger protein [General function pred	97.02
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	96.95
PF04641	260	Rtf2: Rtf2 RING-finger	96.92
PF08746	43	zf-RING-like: RING-like domain; InterPro: IPR01485	96.83
COG5175	480	MOT2 Transcriptional repressor [Transcription]	96.48
PF14446	54	Prok-RING_1: Prokaryotic RING finger family 1	96.33
KOG3268	234	consensus Predicted E3 ubiquitin ligase [Posttrans	96.24
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	96.17
COG5222	427	Uncharacterized conserved protein, contains RING Z	96.07
KOG1001	674	consensus Helicase-like transcription factor HLTF/	95.99
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	95.93
KOG2034	911	consensus Vacuolar sorting protein PEP3/VPS18 [Int	95.63
PF10272	358	Tmpp129: Putative transmembrane protein precursor;	95.6
KOG2932	389	consensus E3 ubiquitin ligase involved in ubiquiti	95.31
KOG2817	394	consensus Predicted E3 ubiquitin ligase [Posttrans	95.26
COG5220	314	TFB3 Cdk activating kinase (CAK)/RNA polymerase II	95.14
KOG0298	1394	consensus DEAD box-containing helicase-like transc	95.09
KOG1812	384	consensus Predicted E3 ubiquitin ligase [Posttrans	95.01
KOG3161	861	consensus Predicted E3 ubiquitin ligase [Posttrans	94.97
KOG1100	207	consensus Predicted E3 ubiquitin ligase [Posttrans	94.77
KOG3800	300	consensus Predicted E3 ubiquitin ligase containing	94.7
PF03854	50	zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc	94.45
KOG3002	299	consensus Zn finger protein [General function pred	94.41
PF07800	162	DUF1644: Protein of unknown function (DUF1644); In	94.39
KOG3053	293	consensus Uncharacterized conserved protein [Funct	94.28
PF05290	140	Baculo_IE-1: Baculovirus immediate-early protein (	93.35
KOG3899	381	consensus Uncharacterized conserved protein [Funct	93.31
KOG1609	323	consensus Protein involved in mRNA turnover and st	93.09
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	92.57
KOG4362	684	consensus Transcriptional regulator BRCA1 [Replica	92.42
PF13901	202	DUF4206: Domain of unknown function (DUF4206)	91.85
KOG1815	444	consensus Predicted E3 ubiquitin ligase [Posttrans	90.92
KOG1829	580	consensus Uncharacterized conserved protein, conta	90.86
COG5109	396	Uncharacterized conserved protein, contains RING Z	90.71
COG5183	1175	SSM4 Protein involved in mRNA turnover and stabili	89.82
PF02009	299	Rifin_STEVOR: Rifin/stevor family; InterPro: IPR00	89.27
PF15050	133	SCIMP: SCIMP protein	89.1
KOG3113	293	consensus Uncharacterized conserved protein [Funct	89.08
KOG0825	1134	consensus PHD Zn-finger protein [General function	88.58
TIGR00622	112	ssl1 transcription factor ssl1. This family is bas	87.69
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	87.54
PF07975	51	C1_4: TFIIH C1-like domain; InterPro: IPR004595 Al	87.17
KOG4718	235	consensus Non-SMC (structural maintenance of chrom	86.69
PF02439	38	Adeno_E3_CR2: Adenovirus E3 region protein CR2; In	86.61
PF10571	26	UPF0547: Uncharacterised protein family UPF0547; I	86.14
PF02891	50	zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR0041	86.12
smart00249	47	PHD PHD zinc finger. The plant homeodomain (PHD) f	85.64
KOG0269	839	consensus WD40 repeat-containing protein [Function	85.58
PF13717	36	zinc_ribbon_4: zinc-ribbon domain	84.86
PF04423	54	Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IP	84.21
smart00132	39	LIM Zinc-binding domain present in Lin-11, Isl-1,	84.08
PF00412	58	LIM: LIM domain; InterPro: IPR001781 Zinc finger (	84.04
KOG4367	699	consensus Predicted Zn-finger protein [Function un	83.72
TIGR01477	353	RIFIN variant surface antigen, rifin family. This	82.6
PTZ00046	358	rifin; Provisional	81.66
KOG2807	378	consensus RNA polymerase II transcription initiati	81.63
KOG2068	327	consensus MOT2 transcription factor [Transcription	81.62
PTZ00370	296	STEVOR; Provisional	81.52
PF01363	69	FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc f	80.74
cd00065	57	FYVE FYVE domain; Zinc-binding domain; targets pro	80.49

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.89  E-value=2.8e-23  Score=150.20  Aligned_cols=77  Identities=31%  Similarity=0.694  Sum_probs=64.1

Q ss_pred             cCCCCCHHHHhhCCCcccCCCCCc---ccccccccccccCCCccccCCCCccccHHHHHHHHhCC-Cccccccccccccc
Q 037529           48 AEGGLSASELDKLPKISGKELVMG---TECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKH-SVCPVCRAKLDSHF  123 (133)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~---~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~-~~CP~Cr~~v~~~~  123 (133)
                      ...++.++.++++|...+....+.   ++|+||||+|++||+++.|| |+|.||..||++||.+. ..||+||+++....
T Consensus       203 ~~~r~~k~~l~~~p~~~f~~~~~~~~~~~CaIClEdY~~GdklRiLP-C~H~FH~~CIDpWL~~~r~~CPvCK~di~~~~  281 (348)
T KOG4628|consen  203 RRNRLIKRLLKKLPVRTFTKGDDEDATDTCAICLEDYEKGDKLRILP-CSHKFHVNCIDPWLTQTRTFCPVCKRDIRTDS  281 (348)
T ss_pred             hhhhhHHHHHhhCCcEEeccccccCCCceEEEeecccccCCeeeEec-CCCchhhccchhhHhhcCccCCCCCCcCCCCC
Confidence            445677888889888876665444   39999999999999999999 99999999999999876 56999999875544


Q ss_pred             cc
Q 037529          124 FN  125 (133)
Q Consensus       124 ~~  125 (133)
                      ..
T Consensus       282 ~~  283 (348)
T KOG4628|consen  282 GS  283 (348)
T ss_pred             CC
Confidence            33

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=99.80  E-value=1.9e-20  Score=98.86  Aligned_cols=44  Identities=43%  Similarity=1.120  Sum_probs=40.5

Q ss_pred             ccccccccccccCCCccccCCCCccccHHHHHHHHhCCCcccccc
Q 037529           72 TECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCR  116 (133)
Q Consensus        72 ~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr  116 (133)
                      ++|+||++++.+++.+..++ |||.||.+|+.+|++++.+||+||
T Consensus         1 d~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~~~~CP~CR   44 (44)
T PF13639_consen    1 DECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKRNNSCPVCR   44 (44)
T ss_dssp             -CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred             CCCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHhCCcCCccC
Confidence            47999999999999999999 999999999999999999999997

...

>PHA02929 N1R/p28-like protein; Provisional

Probab=99.65  E-value=1.4e-16  Score=111.00  Aligned_cols=72  Identities=29%  Similarity=0.689  Sum_probs=54.9

Q ss_pred             CCCCHHHHhhCCCcccC-----CCCCcccccccccccccCCC----ccccCCCCccccHHHHHHHHhCCCcccccccccc
Q 037529           50 GGLSASELDKLPKISGK-----ELVMGTECAVCLDEVESEQP----ARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLD  120 (133)
Q Consensus        50 ~~~~~~~~~~~~~~~~~-----~~~~~~~C~ICl~~~~~~~~----~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~  120 (133)
                      ++.++..++++|....+     +.+.+.+|+||++.+.++..    +.+++.|||.||.+||.+|++.+.+||+||..+.
T Consensus       148 ~~~~~~~i~~lp~vl~~~e~~~~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~  227 (238)
T PHA02929        148 GKNYKKFLKTIPSVLSEYEKLYNRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI  227 (238)
T ss_pred             cchhHHHHHhcchhhhhhhhhhcCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence            45577778888876432     22456899999999876431    2344449999999999999999999999999876


Q ss_pred             c
Q 037529          121 S  121 (133)
Q Consensus       121 ~  121 (133)
                      .
T Consensus       228 ~  228 (238)
T PHA02929        228 S  228 (238)
T ss_pred             E
Confidence            4

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.63  E-value=5.9e-17  Score=114.36  Aligned_cols=52  Identities=38%  Similarity=0.993  Sum_probs=47.8

Q ss_pred             CCcccccccccccccCCCccccCCCCccccHHHHHHHHh-CCCccccccccccc
Q 037529           69 VMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLS-KHSVCPVCRAKLDS  121 (133)
Q Consensus        69 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~-~~~~CP~Cr~~v~~  121 (133)
                      ..+.+|+|||++|..+|.+++|| |.|.||..|+++|+. .+..||+||+.+++
T Consensus       321 ~~GveCaICms~fiK~d~~~vlP-C~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP  373 (374)
T COG5540         321 DKGVECAICMSNFIKNDRLRVLP-CDHRFHVGCVDKWLLGYSNKCPVCRTAIPP  373 (374)
T ss_pred             CCCceEEEEhhhhcccceEEEec-cCceechhHHHHHHhhhcccCCccCCCCCC
Confidence            44689999999999999999999 999999999999988 67899999998865

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.63  E-value=2.1e-16  Score=91.89  Aligned_cols=46  Identities=37%  Similarity=1.015  Sum_probs=36.1

Q ss_pred             CcccccccccccccC----------CCccccCCCCccccHHHHHHHHhCCCcccccc
Q 037529           70 MGTECAVCLDEVESE----------QPARLVPGCNHGFHLQCADSWLSKHSVCPVCR  116 (133)
Q Consensus        70 ~~~~C~ICl~~~~~~----------~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr  116 (133)
                      .++.|+||++++.+.          -.+...+ |||.||..||.+|++.+.+||+||
T Consensus        18 ~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~-C~H~FH~~Ci~~Wl~~~~~CP~CR   73 (73)
T PF12678_consen   18 ADDNCAICREPLEDPCPECQAPQDECPIVWGP-CGHIFHFHCISQWLKQNNTCPLCR   73 (73)
T ss_dssp             CCSBETTTTSBTTSTTCCHHHCTTTS-EEEET-TSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred             cCCcccccChhhhChhhhhcCCccccceEecc-cCCCEEHHHHHHHHhcCCcCCCCC
Confidence            345699999999332          2334455 999999999999999999999998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=99.55  E-value=3.5e-15  Score=108.09  Aligned_cols=62  Identities=29%  Similarity=0.849  Sum_probs=47.8

Q ss_pred             HhhCCCcccCCC-CCccccccccccc-ccC---------CCccccCCCCccccHHHHHHHHhCCCccccccccc
Q 037529           57 LDKLPKISGKEL-VMGTECAVCLDEV-ESE---------QPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKL  119 (133)
Q Consensus        57 ~~~~~~~~~~~~-~~~~~C~ICl~~~-~~~---------~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v  119 (133)
                      -+-++....+.. .++..|.||++++ ..+         .+...|| |||++|-+|+..|++++++||+||+++
T Consensus       272 ~~~~~t~t~eql~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLp-CGHilHl~CLknW~ERqQTCPICr~p~  344 (491)
T COG5243         272 NAMYPTATEEQLTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLP-CGHILHLHCLKNWLERQQTCPICRRPV  344 (491)
T ss_pred             HhhcchhhhhhhcCCCCeEEEecccccCCCCccCcccccCCccccc-ccceeeHHHHHHHHHhccCCCcccCcc
Confidence            334444444333 5678999999994 433         2446788 999999999999999999999999984

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.52  E-value=2.2e-14  Score=100.87  Aligned_cols=50  Identities=30%  Similarity=0.804  Sum_probs=43.9

Q ss_pred             cccccccccccccCCCccccCCCCccccHHHHHHHHhCCCcccccccccccccc
Q 037529           71 GTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSHFF  124 (133)
Q Consensus        71 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~~~  124 (133)
                      ...|.+|||..++   ...+| |||+||.+||..|...+..||+||+.+.++..
T Consensus       239 ~~kC~LCLe~~~~---pSaTp-CGHiFCWsCI~~w~~ek~eCPlCR~~~~pskv  288 (293)
T KOG0317|consen  239 TRKCSLCLENRSN---PSATP-CGHIFCWSCILEWCSEKAECPLCREKFQPSKV  288 (293)
T ss_pred             CCceEEEecCCCC---CCcCc-CcchHHHHHHHHHHccccCCCcccccCCCcce
Confidence            4789999998766   55778 99999999999999999999999998877654

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=99.49  E-value=2.2e-14  Score=77.49  Aligned_cols=47  Identities=34%  Similarity=0.929  Sum_probs=40.0

Q ss_pred             cccccccccccccCCCccccCCCCcc-ccHHHHHHHHhCCCccccccccccc
Q 037529           71 GTECAVCLDEVESEQPARLVPGCNHG-FHLQCADSWLSKHSVCPVCRAKLDS  121 (133)
Q Consensus        71 ~~~C~ICl~~~~~~~~~~~lp~C~H~-fh~~Ci~~wl~~~~~CP~Cr~~v~~  121 (133)
                      +..|.||++...+   ...+| |||. |+.+|+..|+..+..||+||+++..
T Consensus         2 ~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~   49 (50)
T PF13920_consen    2 DEECPICFENPRD---VVLLP-CGHLCFCEECAERLLKRKKKCPICRQPIES   49 (50)
T ss_dssp             HSB-TTTSSSBSS---EEEET-TCEEEEEHHHHHHHHHTTSBBTTTTBB-SE
T ss_pred             cCCCccCCccCCc---eEEeC-CCChHHHHHHhHHhcccCCCCCcCChhhcC
Confidence            4689999998654   77888 9999 9999999999999999999998864

...

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=99.43  E-value=8e-14  Score=71.45  Aligned_cols=39  Identities=44%  Similarity=1.186  Sum_probs=32.8

Q ss_pred             ccccccccccCCCccccCCCCccccHHHHHHHHhCCCccccc
Q 037529           74 CAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVC  115 (133)
Q Consensus        74 C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~C  115 (133)
                      |+||++.+.+  .+..++ |||.|+.+|+.+|++.+..||+|
T Consensus         1 C~iC~~~~~~--~~~~~~-CGH~fC~~C~~~~~~~~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRD--PVVVTP-CGHSFCKECIEKYLEKNPKCPVC   39 (39)
T ss_dssp             ETTTTSB-SS--EEEECT-TSEEEEHHHHHHHHHCTSB-TTT
T ss_pred             CCCCCCcccC--cCEECC-CCCchhHHHHHHHHHCcCCCcCC
Confidence            8999999776  345677 99999999999999999999998

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.43  E-value=3.3e-14  Score=99.10  Aligned_cols=63  Identities=29%  Similarity=0.670  Sum_probs=54.1

Q ss_pred             CCcccccccccccccCC-------CccccCCCCccccHHHHHHH--HhCCCccccccccccccccccCCCCCC
Q 037529           69 VMGTECAVCLDEVESEQ-------PARLVPGCNHGFHLQCADSW--LSKHSVCPVCRAKLDSHFFNALESDNP  132 (133)
Q Consensus        69 ~~~~~C~ICl~~~~~~~-------~~~~lp~C~H~fh~~Ci~~w--l~~~~~CP~Cr~~v~~~~~~~~~~~~p  132 (133)
                      .++..|+||-..+..+.       ++..|. |+|+||+.||..|  +.++++||.|+..++.+.....+++.|
T Consensus       222 l~d~vCaVCg~~~~~s~~eegvienty~Ls-CnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rmfsnpWekp  293 (328)
T KOG1734|consen  222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLS-CNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSNPWEKP  293 (328)
T ss_pred             CCcchhHhhcchheeecchhhhhhhheeee-cccchHHHhhhhheeecCCCCCchHHHHhhHhhhccCccccc
Confidence            45688999999887665       778898 9999999999999  457889999999999988888777766

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=99.43  E-value=1.1e-13  Score=93.08  Aligned_cols=52  Identities=27%  Similarity=0.703  Sum_probs=41.4

Q ss_pred             CCcccccccccccccCCCccccCCCCccccHHHHHHHHhC----------------CCcccccccccccccc
Q 037529           69 VMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSK----------------HSVCPVCRAKLDSHFF  124 (133)
Q Consensus        69 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~----------------~~~CP~Cr~~v~~~~~  124 (133)
                      .++.+|+||++.+++   ..+++ |||.||..||.+|+..                ...||+||+.+.....
T Consensus        16 ~~~~~CpICld~~~d---PVvT~-CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~L   83 (193)
T PLN03208         16 GGDFDCNICLDQVRD---PVVTL-CGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATL   83 (193)
T ss_pred             CCccCCccCCCcCCC---cEEcC-CCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcE
Confidence            346889999999865   34577 9999999999999852                2479999998876443

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=99.40  E-value=1.9e-13  Score=71.65  Aligned_cols=44  Identities=43%  Similarity=1.174  Sum_probs=36.9

Q ss_pred             cccccccccccCCCccccCCCCccccHHHHHHHHhC-CCccccccccc
Q 037529           73 ECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSK-HSVCPVCRAKL  119 (133)
Q Consensus        73 ~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~v  119 (133)
                      +|+||++.+  .+.....+ |||.||.+|+..|+.. +..||.||+.+
T Consensus         1 ~C~iC~~~~--~~~~~~~~-C~H~~c~~C~~~~~~~~~~~Cp~C~~~~   45 (45)
T cd00162           1 ECPICLEEF--REPVVLLP-CGHVFCRSCIDKWLKSGKNTCPLCRTPI   45 (45)
T ss_pred             CCCcCchhh--hCceEecC-CCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence            599999998  34455666 9999999999999997 67899999754

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.36  E-value=4.7e-13  Score=88.24  Aligned_cols=53  Identities=34%  Similarity=0.765  Sum_probs=44.4

Q ss_pred             cccccccccccccCCCccccCCCCccccHHHHHHHHhCCCccccccccccccccc
Q 037529           71 GTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSHFFN  125 (133)
Q Consensus        71 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~~~~  125 (133)
                      ...|+|||+.+.....+ -+. |||+||..||...++....||+||+.|+...+.
T Consensus       131 ~~~CPiCl~~~sek~~v-sTk-CGHvFC~~Cik~alk~~~~CP~C~kkIt~k~~~  183 (187)
T KOG0320|consen  131 TYKCPICLDSVSEKVPV-STK-CGHVFCSQCIKDALKNTNKCPTCRKKITHKQFH  183 (187)
T ss_pred             ccCCCceecchhhcccc-ccc-cchhHHHHHHHHHHHhCCCCCCcccccchhhhe
Confidence            46799999998865433 344 999999999999999999999999998876554

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=99.35  E-value=6e-13  Score=69.93  Aligned_cols=44  Identities=32%  Similarity=0.830  Sum_probs=38.6

Q ss_pred             cccccccccccCCCccccCCCCccccHHHHHHHHhCCCccccccc
Q 037529           73 ECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRA  117 (133)
Q Consensus        73 ~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~  117 (133)
                      .|+||+++|.+.....+++ |||+|+.+|+..+......||+||+
T Consensus         1 ~C~~C~~~~~~~~~~~l~~-CgH~~C~~C~~~~~~~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSEERRPRLTS-CGHIFCEKCLKKLKGKSVKCPICRK   44 (44)
T ss_pred             CCcCcCccccCCCCeEEcc-cCCHHHHHHHHhhcCCCCCCcCCCC
Confidence            4999999996666788888 9999999999999866779999985

>PHA02926 zinc finger-like protein; Provisional

Probab=99.33  E-value=1.1e-12  Score=89.58  Aligned_cols=53  Identities=30%  Similarity=0.782  Sum_probs=40.4

Q ss_pred             CCcccccccccccccC-----CCccccCCCCccccHHHHHHHHhCC------Cccccccccccc
Q 037529           69 VMGTECAVCLDEVESE-----QPARLVPGCNHGFHLQCADSWLSKH------SVCPVCRAKLDS  121 (133)
Q Consensus        69 ~~~~~C~ICl~~~~~~-----~~~~~lp~C~H~fh~~Ci~~wl~~~------~~CP~Cr~~v~~  121 (133)
                      +.+.+|+||+|..-++     ....+|++|+|.||..||..|...+      .+||+||..+..
T Consensus       168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~  231 (242)
T PHA02926        168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRN  231 (242)
T ss_pred             cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeee
Confidence            4568999999986432     1234566699999999999998753      359999997653

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.29  E-value=1.4e-12  Score=101.32  Aligned_cols=49  Identities=37%  Similarity=0.945  Sum_probs=44.2

Q ss_pred             CcccccccccccccCCC--ccccCCCCccccHHHHHHHHhCCCccccccccc
Q 037529           70 MGTECAVCLDEVESEQP--ARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKL  119 (133)
Q Consensus        70 ~~~~C~ICl~~~~~~~~--~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v  119 (133)
                      .+..|+||+|++..+++  ...+| |||+||..|+..|++++++||+||..+
T Consensus       290 ~~~~C~IC~e~l~~~~~~~~~rL~-C~Hifh~~CL~~W~er~qtCP~CR~~~  340 (543)
T KOG0802|consen  290 SDELCIICLEELHSGHNITPKRLP-CGHIFHDSCLRSWFERQQTCPTCRTVL  340 (543)
T ss_pred             cCCeeeeechhhccccccccceee-cccchHHHHHHHHHHHhCcCCcchhhh
Confidence            46889999999998765  67888 999999999999999999999999944

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.28  E-value=3.1e-12  Score=87.73  Aligned_cols=53  Identities=28%  Similarity=0.613  Sum_probs=41.9

Q ss_pred             CCCcccccccccccccCCCccccCCCCccccHHHHHHHHhC---CCcccccccccccccc
Q 037529           68 LVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSK---HSVCPVCRAKLDSHFF  124 (133)
Q Consensus        68 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~---~~~CP~Cr~~v~~~~~  124 (133)
                      .....+|.|||+.-++   .+++. |||.||.-||-+||..   ++.||+||..|+....
T Consensus        44 ~~~~FdCNICLd~akd---PVvTl-CGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~v   99 (230)
T KOG0823|consen   44 DGGFFDCNICLDLAKD---PVVTL-CGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTV   99 (230)
T ss_pred             CCCceeeeeeccccCC---CEEee-cccceehHHHHHHHhhcCCCeeCCccccccccceE
Confidence            4556899999998554   34555 9999999999999985   4479999998876543

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=99.27  E-value=3.2e-12  Score=75.15  Aligned_cols=51  Identities=27%  Similarity=0.736  Sum_probs=38.2

Q ss_pred             Cccccccccccccc--------CCC-ccccCCCCccccHHHHHHHHhC---CCcccccccccc
Q 037529           70 MGTECAVCLDEVES--------EQP-ARLVPGCNHGFHLQCADSWLSK---HSVCPVCRAKLD  120 (133)
Q Consensus        70 ~~~~C~ICl~~~~~--------~~~-~~~lp~C~H~fh~~Ci~~wl~~---~~~CP~Cr~~v~  120 (133)
                      +++.|.||...|..        ++. ..++..|+|.||..||.+|+.+   +..||+||+...
T Consensus        20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~   82 (85)
T PF12861_consen   20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK   82 (85)
T ss_pred             CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence            47889999988862        222 1123349999999999999986   468999998653

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.26  E-value=3.5e-12  Score=65.97  Aligned_cols=39  Identities=38%  Similarity=1.071  Sum_probs=33.3

Q ss_pred             ccccccccccCCCccccCCCCccccHHHHHHHHh--CCCccccc
Q 037529           74 CAVCLDEVESEQPARLVPGCNHGFHLQCADSWLS--KHSVCPVC  115 (133)
Q Consensus        74 C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~--~~~~CP~C  115 (133)
                      |+||++.+.++.  ..++ |||.||.+|+.+|++  ....||+|
T Consensus         1 C~iC~~~~~~~~--~~~~-C~H~fC~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFEDPV--ILLP-CGHSFCRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSSEE--EETT-TSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCccccCCC--EEec-CCCcchHHHHHHHHHhcCCccCCcC
Confidence            899999987644  4677 999999999999999  45689988

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=99.24  E-value=4.9e-12  Score=65.64  Aligned_cols=38  Identities=32%  Similarity=0.861  Sum_probs=29.2

Q ss_pred             ccccccccccCCCccccCCCCccccHHHHHHHHhCC----Cccccc
Q 037529           74 CAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKH----SVCPVC  115 (133)
Q Consensus        74 C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~----~~CP~C  115 (133)
                      |+||++.|++   ...++ |||.|+.+||..|++..    ..||.|
T Consensus         1 CpiC~~~~~~---Pv~l~-CGH~FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKD---PVSLP-CGHSFCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SS---EEE-S-SSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhhCC---ccccC-CcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence            8999999987   55677 99999999999999764    369987

>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.21  E-value=1.6e-11  Score=92.01  Aligned_cols=50  Identities=34%  Similarity=0.893  Sum_probs=39.2

Q ss_pred             ccccccccccccc---CC-----------CccccCCCCccccHHHHHHHHh-CCCccccccccccc
Q 037529           71 GTECAVCLDEVES---EQ-----------PARLVPGCNHGFHLQCADSWLS-KHSVCPVCRAKLDS  121 (133)
Q Consensus        71 ~~~C~ICl~~~~~---~~-----------~~~~lp~C~H~fh~~Ci~~wl~-~~~~CP~Cr~~v~~  121 (133)
                      ..+|+||+.++.-   +.           ....+| |.|+||..|+.+|+. .+-.||.||+.+.+
T Consensus       571 t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tP-C~HifH~~CL~~WMd~ykl~CPvCR~pLPp  635 (636)
T KOG0828|consen  571 TNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTP-CHHIFHRQCLLQWMDTYKLICPVCRCPLPP  635 (636)
T ss_pred             cccceEeccccceeeccCcchhhhhhhhccccccc-hHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence            4679999988631   11           123567 999999999999999 56699999998764

>smart00184 RING Ring finger

Probab=99.18  E-value=2e-11  Score=61.71  Aligned_cols=38  Identities=37%  Similarity=1.123  Sum_probs=32.2

Q ss_pred             ccccccccccCCCccccCCCCccccHHHHHHHHh-CCCccccc
Q 037529           74 CAVCLDEVESEQPARLVPGCNHGFHLQCADSWLS-KHSVCPVC  115 (133)
Q Consensus        74 C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~-~~~~CP~C  115 (133)
                      |+||++.   ......++ |||.||.+|++.|+. .+..||+|
T Consensus         1 C~iC~~~---~~~~~~~~-C~H~~c~~C~~~~~~~~~~~CP~C   39 (39)
T smart00184        1 CPICLEE---LKDPVVLP-CGHTFCRSCIRKWLKSGNNTCPIC   39 (39)
T ss_pred             CCcCccC---CCCcEEec-CCChHHHHHHHHHHHhCcCCCCCC
Confidence            7899998   34477788 999999999999998 56679987

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>smart00504 Ubox Modified RING finger domain

Probab=99.14  E-value=4.4e-11  Score=67.42  Aligned_cols=47  Identities=19%  Similarity=0.483  Sum_probs=40.8

Q ss_pred             ccccccccccccCCCccccCCCCccccHHHHHHHHhCCCcccccccccccc
Q 037529           72 TECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSH  122 (133)
Q Consensus        72 ~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~  122 (133)
                      ..|+||.+.++++   ..++ |||+|+.+||.+|+..+..||+|++.++..
T Consensus         2 ~~Cpi~~~~~~~P---v~~~-~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~   48 (63)
T smart00504        2 FLCPISLEVMKDP---VILP-SGQTYERRAIEKWLLSHGTDPVTGQPLTHE   48 (63)
T ss_pred             cCCcCCCCcCCCC---EECC-CCCEEeHHHHHHHHHHCCCCCCCcCCCChh
Confidence            4699999998873   4667 999999999999999988999999988543

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>TIGR00599 rad18 DNA repair protein rad18

Probab=99.06  E-value=1.5e-10  Score=86.27  Aligned_cols=52  Identities=31%  Similarity=0.643  Sum_probs=43.8

Q ss_pred             CCCCcccccccccccccCCCccccCCCCccccHHHHHHHHhCCCcccccccccccc
Q 037529           67 ELVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSH  122 (133)
Q Consensus        67 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~  122 (133)
                      .......|+||++.|...   .+++ |||.||..||..|+.....||+||..+...
T Consensus        22 ~Le~~l~C~IC~d~~~~P---vitp-CgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~   73 (397)
T TIGR00599        22 PLDTSLRCHICKDFFDVP---VLTS-CSHTFCSLCIRRCLSNQPKCPLCRAEDQES   73 (397)
T ss_pred             ccccccCCCcCchhhhCc---cCCC-CCCchhHHHHHHHHhCCCCCCCCCCccccc
Confidence            445568999999998763   3677 999999999999999888999999987643

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=99.06  E-value=1.2e-10  Score=66.92  Aligned_cols=32  Identities=38%  Similarity=0.739  Sum_probs=28.3

Q ss_pred             CCCccccHHHHHHHHhCCCccccccccccccc
Q 037529           92 GCNHGFHLQCADSWLSKHSVCPVCRAKLDSHF  123 (133)
Q Consensus        92 ~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~~  123 (133)
                      .|+|.||..||..||.++..||++|++.....
T Consensus        53 ~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~~~   84 (88)
T COG5194          53 VCNHAFHDHCIYRWLDTKGVCPLDRQTWVLAD   84 (88)
T ss_pred             ecchHHHHHHHHHHHhhCCCCCCCCceeEEec
Confidence            39999999999999999999999999765443

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=99.00  E-value=2.8e-10  Score=59.12  Aligned_cols=38  Identities=32%  Similarity=0.849  Sum_probs=22.4

Q ss_pred             ccccccccccCC-CccccCCCCccccHHHHHHHHhCC----Cccc
Q 037529           74 CAVCLDEVESEQ-PARLVPGCNHGFHLQCADSWLSKH----SVCP  113 (133)
Q Consensus        74 C~ICl~~~~~~~-~~~~lp~C~H~fh~~Ci~~wl~~~----~~CP  113 (133)
                      |+||.| |.+++ ...+|+ |||+|+.+|+++++.++    ..||
T Consensus         1 CpIc~e-~~~~~n~P~~L~-CGH~~c~~cl~~l~~~~~~~~~kCP   43 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLP-CGHVFCKDCLQKLSKKSDRNRFKCP   43 (43)
T ss_dssp             -TTT-----TTSS-EEE-S-SS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred             CCcccc-ccCCCCCCEEEe-CccHHHHHHHHHHHhcCCCCeeeCc
Confidence            899999 86655 446798 99999999999999843    2576

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.95  E-value=3.5e-10  Score=79.00  Aligned_cols=50  Identities=38%  Similarity=0.792  Sum_probs=41.1

Q ss_pred             CcccccccccccccCCCccccCCCCccccHHHHHH-HHhCCCc-cccccccccccc
Q 037529           70 MGTECAVCLDEVESEQPARLVPGCNHGFHLQCADS-WLSKHSV-CPVCRAKLDSHF  123 (133)
Q Consensus        70 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~-wl~~~~~-CP~Cr~~v~~~~  123 (133)
                      .+..|+||++....   ...++ |||+||..||.. |=.++.. ||+||+.+.++.
T Consensus       214 ~d~kC~lC~e~~~~---ps~t~-CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~  265 (271)
T COG5574         214 ADYKCFLCLEEPEV---PSCTP-CGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK  265 (271)
T ss_pred             cccceeeeecccCC---ccccc-ccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence            36789999998665   55777 999999999999 8666665 999999876654

>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.94  E-value=2.5e-10  Score=68.79  Aligned_cols=51  Identities=31%  Similarity=0.738  Sum_probs=38.2

Q ss_pred             Cccccccccccc-------------ccCCCccccCCCCccccHHHHHHHHhCCCcccccccccc
Q 037529           70 MGTECAVCLDEV-------------ESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLD  120 (133)
Q Consensus        70 ~~~~C~ICl~~~-------------~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~  120 (133)
                      ..+.|+||...+             ..++-......|+|.||..||..||+++..||+|.+.-.
T Consensus        45 ~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW~  108 (114)
T KOG2930|consen   45 VVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEWV  108 (114)
T ss_pred             eechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCccee
Confidence            357799987554             122333344459999999999999999999999988643

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.89  E-value=7.4e-10  Score=83.62  Aligned_cols=48  Identities=23%  Similarity=0.624  Sum_probs=38.8

Q ss_pred             cccccccccccccCCCccccCCCCccccHHHHHHHHhCC-----Ccccccccccccc
Q 037529           71 GTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKH-----SVCPVCRAKLDSH  122 (133)
Q Consensus        71 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~-----~~CP~Cr~~v~~~  122 (133)
                      +..|||||++...   ...+. |||+||..||-++|...     ..||+||..|...
T Consensus       186 ~~~CPICL~~~~~---p~~t~-CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~k  238 (513)
T KOG2164|consen  186 DMQCPICLEPPSV---PVRTN-CGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLK  238 (513)
T ss_pred             CCcCCcccCCCCc---ccccc-cCceeeHHHHHHHHhhhcccCCccCCchhhhcccc
Confidence            6889999998554   33444 99999999999998754     3799999998773

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=98.88  E-value=1.2e-09  Score=58.39  Aligned_cols=42  Identities=29%  Similarity=0.888  Sum_probs=33.0

Q ss_pred             cccccccccccCCCccccCCCC-----ccccHHHHHHHHhCC--Ccccccc
Q 037529           73 ECAVCLDEVESEQPARLVPGCN-----HGFHLQCADSWLSKH--SVCPVCR  116 (133)
Q Consensus        73 ~C~ICl~~~~~~~~~~~lp~C~-----H~fh~~Ci~~wl~~~--~~CP~Cr  116 (133)
                      .|-||++. .+++...+.| |.     |.+|.+|+.+|+..+  .+||+|+
T Consensus         1 ~CrIC~~~-~~~~~~l~~P-C~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~   49 (49)
T smart00744        1 ICRICHDE-GDEGDPLVSP-CRCKGSLKYVHQECLERWINESGNKTCEICK   49 (49)
T ss_pred             CccCCCCC-CCCCCeeEec-cccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence            48899993 3444555788 86     999999999999754  4899995

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=98.78  E-value=5.6e-09  Score=75.25  Aligned_cols=54  Identities=20%  Similarity=0.484  Sum_probs=39.9

Q ss_pred             Ccccccccccc-cccCC-CccccCCCCccccHHHHHHHHhC-CCcccccccccccccc
Q 037529           70 MGTECAVCLDE-VESEQ-PARLVPGCNHGFHLQCADSWLSK-HSVCPVCRAKLDSHFF  124 (133)
Q Consensus        70 ~~~~C~ICl~~-~~~~~-~~~~lp~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~v~~~~~  124 (133)
                      ++..||+|..+ |..++ .+.+.+ |||.||.+|++..+.. ...||.|+..+....+
T Consensus         2 d~~~CP~Ck~~~y~np~~kl~i~~-CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~f   58 (309)
T TIGR00570         2 DDQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGSGSCPECDTPLRKNNF   58 (309)
T ss_pred             CCCCCCcCCCCCccCcccccccCC-CCCcccHHHHHHHhcCCCCCCCCCCCccchhhc
Confidence            35689999986 33333 344446 9999999999996654 5689999998866543

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.77  E-value=2.8e-09  Score=60.84  Aligned_cols=51  Identities=25%  Similarity=0.679  Sum_probs=36.4

Q ss_pred             Cccccccccccccc--------CCC-ccccCCCCccccHHHHHHHHhC---CCcccccccccc
Q 037529           70 MGTECAVCLDEVES--------EQP-ARLVPGCNHGFHLQCADSWLSK---HSVCPVCRAKLD  120 (133)
Q Consensus        70 ~~~~C~ICl~~~~~--------~~~-~~~lp~C~H~fh~~Ci~~wl~~---~~~CP~Cr~~v~  120 (133)
                      .++.|-||.-.|..        +|. ..++..|.|.||..||.+|+..   +..||+||++..
T Consensus        19 ~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~   81 (84)
T KOG1493|consen   19 PDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ   81 (84)
T ss_pred             CCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence            34578888877742        221 1233349999999999999985   347999998754

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=98.76  E-value=2.4e-09  Score=77.39  Aligned_cols=50  Identities=24%  Similarity=0.643  Sum_probs=43.7

Q ss_pred             cccccccccccccCCCccccCCCCccccHHHHHHHHhCCCcccccccccccccc
Q 037529           71 GTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSHFF  124 (133)
Q Consensus        71 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~~~  124 (133)
                      -..|-||.|-|..   ..++| |+|.||.-||..+|..+..||.|+.++.+...
T Consensus        23 lLRC~IC~eyf~i---p~itp-CsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~L   72 (442)
T KOG0287|consen   23 LLRCGICFEYFNI---PMITP-CSHTFCSLCIRKFLSYKPQCPTCCVTVTESDL   72 (442)
T ss_pred             HHHHhHHHHHhcC---ceecc-ccchHHHHHHHHHhccCCCCCceecccchhhh
Confidence            4579999999987   45777 99999999999999999999999988876543

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.71  E-value=7.4e-09  Score=75.30  Aligned_cols=51  Identities=31%  Similarity=0.765  Sum_probs=43.5

Q ss_pred             CCcccccccccccccCCCccccCCCCcc-ccHHHHHHHHhCCCccccccccccccc
Q 037529           69 VMGTECAVCLDEVESEQPARLVPGCNHG-FHLQCADSWLSKHSVCPVCRAKLDSHF  123 (133)
Q Consensus        69 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~-fh~~Ci~~wl~~~~~CP~Cr~~v~~~~  123 (133)
                      .++.+|.|||.+-++   ..+|| |.|. .|.+|.+..--+...||+||+.+....
T Consensus       288 ~~gkeCVIClse~rd---t~vLP-CRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ll  339 (349)
T KOG4265|consen  288 ESGKECVICLSESRD---TVVLP-CRHLCLCSGCAKSLRYQTNNCPICRQPIEELL  339 (349)
T ss_pred             cCCCeeEEEecCCcc---eEEec-chhhehhHhHHHHHHHhhcCCCccccchHhhh
Confidence            446899999999665   78999 9997 999999998777889999999886643

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=98.70  E-value=6.1e-09  Score=77.59  Aligned_cols=49  Identities=37%  Similarity=0.780  Sum_probs=39.7

Q ss_pred             CCcccccccccccccCC-CccccCCCCccccHHHHHHHHhCCCcccccccccc
Q 037529           69 VMGTECAVCLDEVESEQ-PARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLD  120 (133)
Q Consensus        69 ~~~~~C~ICl~~~~~~~-~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~  120 (133)
                      .+..+||+|||.+.+.- .++... |.|.||..|+..|  ...+||+||.-..
T Consensus       173 tELPTCpVCLERMD~s~~gi~t~~-c~Hsfh~~cl~~w--~~~scpvcR~~q~  222 (493)
T KOG0804|consen  173 TELPTCPVCLERMDSSTTGILTIL-CNHSFHCSCLMKW--WDSSCPVCRYCQS  222 (493)
T ss_pred             ccCCCcchhHhhcCccccceeeee-cccccchHHHhhc--ccCcChhhhhhcC
Confidence            44588999999998654 445555 9999999999999  6789999997544

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=98.70  E-value=1.6e-08  Score=58.73  Aligned_cols=51  Identities=16%  Similarity=0.354  Sum_probs=39.2

Q ss_pred             CcccccccccccccCCCccccCCCCccccHHHHHHHHhC-CCcccccccccccccc
Q 037529           70 MGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSK-HSVCPVCRAKLDSHFF  124 (133)
Q Consensus        70 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~v~~~~~  124 (133)
                      +...|+|+.+-+.+   ..++| +||+|.+++|..|+.+ +..||++++.+.....
T Consensus         3 ~~f~CpIt~~lM~d---PVi~~-~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l   54 (73)
T PF04564_consen    3 DEFLCPITGELMRD---PVILP-SGHTYERSAIERWLEQNGGTDPFTRQPLSESDL   54 (73)
T ss_dssp             GGGB-TTTSSB-SS---EEEET-TSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGS
T ss_pred             cccCCcCcCcHhhC---ceeCC-cCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccc
Confidence            35689999999987   55778 9999999999999999 7899999998876543

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=98.61  E-value=4.4e-09  Score=60.50  Aligned_cols=52  Identities=25%  Similarity=0.703  Sum_probs=24.7

Q ss_pred             cccccccccccccCCCc--ccc--CCCCccccHHHHHHHHhC---C--------Ccccccccccccc
Q 037529           71 GTECAVCLDEVESEQPA--RLV--PGCNHGFHLQCADSWLSK---H--------SVCPVCRAKLDSH  122 (133)
Q Consensus        71 ~~~C~ICl~~~~~~~~~--~~l--p~C~H~fh~~Ci~~wl~~---~--------~~CP~Cr~~v~~~  122 (133)
                      +.+|.||++...+++.+  .+-  +.|++.||..|+.+|+..   .        ..||.|+++|.-.
T Consensus         2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~~   68 (70)
T PF11793_consen    2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISWS   68 (70)
T ss_dssp             --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEGG
T ss_pred             CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeEe
Confidence            36799999987633322  121  248999999999999862   1        1599999988643

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.60  E-value=2.2e-08  Score=73.49  Aligned_cols=51  Identities=27%  Similarity=0.748  Sum_probs=36.6

Q ss_pred             ccccccccccccC-CCccccCCCCccccHHHHHHHHhCC---Cccccccccccccc
Q 037529           72 TECAVCLDEVESE-QPARLVPGCNHGFHLQCADSWLSKH---SVCPVCRAKLDSHF  123 (133)
Q Consensus        72 ~~C~ICl~~~~~~-~~~~~lp~C~H~fh~~Ci~~wl~~~---~~CP~Cr~~v~~~~  123 (133)
                      ..|.|| +++.+. ..+.-...|||+||..|+.+|+...   ..||+||-.+....
T Consensus         5 A~C~Ic-~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~r~   59 (465)
T KOG0827|consen    5 AECHIC-IDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQERH   59 (465)
T ss_pred             ceeeEe-ccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeeccccee
Confidence            579999 555433 3444443499999999999999863   47999995554433

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.59  E-value=2e-08  Score=72.13  Aligned_cols=44  Identities=32%  Similarity=0.739  Sum_probs=39.2

Q ss_pred             CCcccccccccccccCCCccccCCCCccccHHHHHHHHhCCCcccccc
Q 037529           69 VMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCR  116 (133)
Q Consensus        69 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr  116 (133)
                      .+...|+||++.|.++   .++| |||.||..|+..++.....||.||
T Consensus        11 ~~~~~C~iC~~~~~~p---~~l~-C~H~~c~~C~~~~~~~~~~Cp~cr   54 (386)
T KOG2177|consen   11 QEELTCPICLEYFREP---VLLP-CGHNFCRACLTRSWEGPLSCPVCR   54 (386)
T ss_pred             cccccChhhHHHhhcC---cccc-ccchHhHHHHHHhcCCCcCCcccC
Confidence            4567899999999987   7888 999999999999988556899999

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=98.56  E-value=3.3e-08  Score=70.23  Aligned_cols=49  Identities=24%  Similarity=0.531  Sum_probs=41.1

Q ss_pred             CcccccccccccccCCCccccCCCCccccHHHHHHHHhCCCcccccccccccc
Q 037529           70 MGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSH  122 (133)
Q Consensus        70 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~  122 (133)
                      .-..|-||-+.+..   ...++ |||.||.-||...|.++..||+||.+..+.
T Consensus        24 s~lrC~IC~~~i~i---p~~Tt-CgHtFCslCIR~hL~~qp~CP~Cr~~~~es   72 (391)
T COG5432          24 SMLRCRICDCRISI---PCETT-CGHTFCSLCIRRHLGTQPFCPVCREDPCES   72 (391)
T ss_pred             hHHHhhhhhheeec---ceecc-cccchhHHHHHHHhcCCCCCccccccHHhh
Confidence            34679999999876   33566 999999999999999999999999865443

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.54  E-value=2.7e-08  Score=53.21  Aligned_cols=46  Identities=26%  Similarity=0.699  Sum_probs=34.6

Q ss_pred             ccccccccccccCCCccccCCCCcc-ccHHHHHHHHh-CCCccccccccccc
Q 037529           72 TECAVCLDEVESEQPARLVPGCNHG-FHLQCADSWLS-KHSVCPVCRAKLDS  121 (133)
Q Consensus        72 ~~C~ICl~~~~~~~~~~~lp~C~H~-fh~~Ci~~wl~-~~~~CP~Cr~~v~~  121 (133)
                      ++|.||+|.-.+  .+..+  |||. .+.+|-...++ .+..||+||+++..
T Consensus         8 dECTICye~pvd--sVlYt--CGHMCmCy~Cg~rl~~~~~g~CPiCRapi~d   55 (62)
T KOG4172|consen    8 DECTICYEHPVD--SVLYT--CGHMCMCYACGLRLKKALHGCCPICRAPIKD   55 (62)
T ss_pred             cceeeeccCcch--HHHHH--cchHHhHHHHHHHHHHccCCcCcchhhHHHH
Confidence            889999998443  23232  9996 99999666555 78899999997743

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=98.48  E-value=4.9e-08  Score=78.67  Aligned_cols=53  Identities=26%  Similarity=0.767  Sum_probs=38.7

Q ss_pred             CCcccccccccccc-cCCCc--cccCCCCccccHHHHHHHHhC--CCccccccccccc
Q 037529           69 VMGTECAVCLDEVE-SEQPA--RLVPGCNHGFHLQCADSWLSK--HSVCPVCRAKLDS  121 (133)
Q Consensus        69 ~~~~~C~ICl~~~~-~~~~~--~~lp~C~H~fh~~Ci~~wl~~--~~~CP~Cr~~v~~  121 (133)
                      +...+||||..-.. .+...  ..-+.|.|-||..|+.+|++.  +++||+||..++.
T Consensus      1467 sG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseitf 1524 (1525)
T COG5219        1467 SGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEITF 1524 (1525)
T ss_pred             CCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCcccccccc
Confidence            55689999998765 22111  111238899999999999986  4689999987753

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.45  E-value=1.1e-07  Score=70.27  Aligned_cols=51  Identities=35%  Similarity=0.813  Sum_probs=38.9

Q ss_pred             Cccccccccccccc-CCCccccCCCCccccHHHHHHHHhC--CCcccccccccc
Q 037529           70 MGTECAVCLDEVES-EQPARLVPGCNHGFHLQCADSWLSK--HSVCPVCRAKLD  120 (133)
Q Consensus        70 ~~~~C~ICl~~~~~-~~~~~~lp~C~H~fh~~Ci~~wl~~--~~~CP~Cr~~v~  120 (133)
                      .+.+|+|||+++.. +++-.+.+.|||.|-.+||+.|+.+  ...||.|...-+
T Consensus         3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~kat   56 (463)
T KOG1645|consen    3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKAT   56 (463)
T ss_pred             ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhH
Confidence            46789999999974 4433333349999999999999974  347999986543

>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.42  E-value=1.1e-07  Score=67.83  Aligned_cols=53  Identities=25%  Similarity=0.481  Sum_probs=43.3

Q ss_pred             cccccccccccccCCCccccCCCCccccHHHHHHHHhCC-CccccccccccccccccC
Q 037529           71 GTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKH-SVCPVCRAKLDSHFFNAL  127 (133)
Q Consensus        71 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~-~~CP~Cr~~v~~~~~~~~  127 (133)
                      ..+|+||+.....+   ..|+ |+|.||..||..-..++ .+|++||.++++.....+
T Consensus         7 ~~eC~IC~nt~n~P---v~l~-C~HkFCyiCiKGsy~ndk~~CavCR~pids~i~~~p   60 (324)
T KOG0824|consen    7 KKECLICYNTGNCP---VNLY-CFHKFCYICIKGSYKNDKKTCAVCRFPIDSTIDFEP   60 (324)
T ss_pred             CCcceeeeccCCcC---cccc-ccchhhhhhhcchhhcCCCCCceecCCCCcchhcch
Confidence            57899999986553   5677 99999999999977665 569999999988776554

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=98.40  E-value=3.9e-08  Score=54.69  Aligned_cols=47  Identities=28%  Similarity=0.646  Sum_probs=23.4

Q ss_pred             ccccccccccccCCCccccCCCCccccHHHHHHHHhCCCccccccccccccc
Q 037529           72 TECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSHF  123 (133)
Q Consensus        72 ~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~~  123 (133)
                      -.|++|.+-++++.   .+.+|+|+|+..||..-+.  ..||+|+.+...+.
T Consensus         8 LrCs~C~~~l~~pv---~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw~qD   54 (65)
T PF14835_consen    8 LRCSICFDILKEPV---CLGGCEHIFCSSCIRDCIG--SECPVCHTPAWIQD   54 (65)
T ss_dssp             TS-SSS-S--SS-B------SSS--B-TTTGGGGTT--TB-SSS--B-S-SS
T ss_pred             cCCcHHHHHhcCCc---eeccCccHHHHHHhHHhcC--CCCCCcCChHHHHH
Confidence            46999999987632   3335999999999988544  45999998764443

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.34  E-value=7.2e-08  Score=70.09  Aligned_cols=53  Identities=28%  Similarity=0.551  Sum_probs=42.7

Q ss_pred             CCcccccccccccccCCCccccCCCCccccHHHHHHHHhC-CCcccccccccccccc
Q 037529           69 VMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSK-HSVCPVCRAKLDSHFF  124 (133)
Q Consensus        69 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~v~~~~~  124 (133)
                      ..+..|+|||+-++.   .+.++.|.|-||.+||..-++. +..||.||+.+.+...
T Consensus        41 ~~~v~c~icl~llk~---tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Skrs   94 (381)
T KOG0311|consen   41 DIQVICPICLSLLKK---TMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRS   94 (381)
T ss_pred             hhhhccHHHHHHHHh---hcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcccccc
Confidence            346889999999876   3344469999999999998875 6799999998876543

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.29  E-value=3.3e-07  Score=67.39  Aligned_cols=51  Identities=29%  Similarity=0.885  Sum_probs=39.4

Q ss_pred             CCcccccccccccccCC----CccccCCCCccccHHHHHHHH--hC-----CCccccccccc
Q 037529           69 VMGTECAVCLDEVESEQ----PARLVPGCNHGFHLQCADSWL--SK-----HSVCPVCRAKL  119 (133)
Q Consensus        69 ~~~~~C~ICl~~~~~~~----~~~~lp~C~H~fh~~Ci~~wl--~~-----~~~CP~Cr~~v  119 (133)
                      ..+.+|.||++...+..    ...++|+|.|.||.+||..|-  .+     .+.||.||...
T Consensus       159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s  220 (344)
T KOG1039|consen  159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPS  220 (344)
T ss_pred             cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcc
Confidence            44689999999876543    133567899999999999996  33     46899999754

>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]

Probab=98.27  E-value=2.6e-07  Score=65.95  Aligned_cols=50  Identities=30%  Similarity=0.802  Sum_probs=42.0

Q ss_pred             cccccccccccccCCCccccCCCCccccHHHHHHHHh-----------------------CCCccccccccccc
Q 037529           71 GTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLS-----------------------KHSVCPVCRAKLDS  121 (133)
Q Consensus        71 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~-----------------------~~~~CP~Cr~~v~~  121 (133)
                      ...|.|||-.|.+++.+.+++ |.|.||..|+..+|.                       .+..||+||..+..
T Consensus       115 ~gqCvICLygfa~~~~ft~T~-C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~  187 (368)
T KOG4445|consen  115 NGQCVICLYGFASSPAFTVTA-CDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKI  187 (368)
T ss_pred             CCceEEEEEeecCCCceeeeh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccc
Confidence            367999999999999999998 999999999988862                       12369999997744

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=98.25  E-value=2.4e-07  Score=73.45  Aligned_cols=50  Identities=24%  Similarity=0.517  Sum_probs=41.1

Q ss_pred             ccccccccccccCCCccccCCCCccccHHHHHHHHhCCCcccccccccccc
Q 037529           72 TECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSH  122 (133)
Q Consensus        72 ~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~  122 (133)
                      ..|++|+..+.++.....-+ |+|.||..|+..|-+...+||+||..+...
T Consensus       124 ~~CP~Ci~s~~DqL~~~~k~-c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v  173 (1134)
T KOG0825|consen  124 NQCPNCLKSCNDQLEESEKH-TAHYFCEECVGSWSRCAQTCPVDRGEFGEV  173 (1134)
T ss_pred             hhhhHHHHHHHHHhhccccc-cccccHHHHhhhhhhhcccCchhhhhhhee
Confidence            45888888777666555666 999999999999999999999999876543

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=98.24  E-value=4.3e-07  Score=71.79  Aligned_cols=50  Identities=24%  Similarity=0.564  Sum_probs=40.5

Q ss_pred             cccccccccccccCCCccccCCCCccccHHHHHHHHhC-CCcccccccccccccc
Q 037529           71 GTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSK-HSVCPVCRAKLDSHFF  124 (133)
Q Consensus        71 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~v~~~~~  124 (133)
                      --.|+.|-...++   ..++. |||+||.+|+..-+.. ...||.|.+.+.....
T Consensus       643 ~LkCs~Cn~R~Kd---~vI~k-C~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv  693 (698)
T KOG0978|consen  643 LLKCSVCNTRWKD---AVITK-CGHVFCEECVQTRYETRQRKCPKCNAAFGANDV  693 (698)
T ss_pred             ceeCCCccCchhh---HHHHh-cchHHHHHHHHHHHHHhcCCCCCCCCCCCcccc
Confidence            3569999977665   44554 9999999999999886 5689999999877654

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.01  E-value=8.2e-06  Score=57.75  Aligned_cols=56  Identities=20%  Similarity=0.380  Sum_probs=41.9

Q ss_pred             cCCCCCcccccccccccccCCCccccCCCCccccHHHHHHHHhCC--Cccccccccccccc
Q 037529           65 GKELVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKH--SVCPVCRAKLDSHF  123 (133)
Q Consensus        65 ~~~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~--~~CP~Cr~~v~~~~  123 (133)
                      .+...++.+|++|-+.-..+  -...+ |||+||..||..-+...  .+||.|..++.+..
T Consensus       233 ss~~t~~~~C~~Cg~~PtiP--~~~~~-C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~~lq  290 (298)
T KOG2879|consen  233 SSTGTSDTECPVCGEPPTIP--HVIGK-CGHIYCYYCIATSRLWDASFTCPLCGENVEPLQ  290 (298)
T ss_pred             cccccCCceeeccCCCCCCC--eeecc-ccceeehhhhhhhhcchhhcccCccCCCCcchh
Confidence            33446678999999985543  33445 99999999999976644  68999999887543

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=97.95  E-value=3.3e-06  Score=62.69  Aligned_cols=44  Identities=25%  Similarity=0.837  Sum_probs=36.8

Q ss_pred             ccccccccccccCCCccccCCCCccccHHHHHHHHhC--CCccccccccc
Q 037529           72 TECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSK--HSVCPVCRAKL  119 (133)
Q Consensus        72 ~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~--~~~CP~Cr~~v  119 (133)
                      .-|-||-|.-   .++.+-| |||..|..|+..|=..  .+.||.||..+
T Consensus       370 eLCKICaend---KdvkIEP-CGHLlCt~CLa~WQ~sd~gq~CPFCRcEI  415 (563)
T KOG1785|consen  370 ELCKICAEND---KDVKIEP-CGHLLCTSCLAAWQDSDEGQTCPFCRCEI  415 (563)
T ss_pred             HHHHHhhccC---CCccccc-ccchHHHHHHHhhcccCCCCCCCceeeEe
Confidence            4599999873   4488898 9999999999999543  46899999876

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.92  E-value=6.9e-06  Score=61.69  Aligned_cols=49  Identities=35%  Similarity=0.785  Sum_probs=42.1

Q ss_pred             CCcccccccccccccCCCccccCCCCccccHHHHHHHHhCCCccccccccccc
Q 037529           69 VMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDS  121 (133)
Q Consensus        69 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~  121 (133)
                      ..+.+|.||+.-+.+   ...+| |||.|+..||+.-+..+..||.||..+..
T Consensus        82 ~sef~c~vc~~~l~~---pv~tp-cghs~c~~Cl~r~ld~~~~cp~Cr~~l~e  130 (398)
T KOG4159|consen   82 RSEFECCVCSRALYP---PVVTP-CGHSFCLECLDRSLDQETECPLCRDELVE  130 (398)
T ss_pred             cchhhhhhhHhhcCC---Ccccc-ccccccHHHHHHHhccCCCCccccccccc
Confidence            557899999887766   55668 99999999999988888999999998765

>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length

Probab=97.87  E-value=4.5e-06  Score=53.29  Aligned_cols=36  Identities=22%  Similarity=0.621  Sum_probs=30.3

Q ss_pred             cccccccccccccCCCccccCCCC------ccccHHHHHHHHh
Q 037529           71 GTECAVCLDEVESEQPARLVPGCN------HGFHLQCADSWLS  107 (133)
Q Consensus        71 ~~~C~ICl~~~~~~~~~~~lp~C~------H~fh~~Ci~~wl~  107 (133)
                      ..+|.||++.+.+++.+..++ ||      |.||.+|+..|=+
T Consensus        26 ~~EC~IC~~~I~~~~GvV~vt-~~g~lnLEkmfc~~C~~rw~~   67 (134)
T PF05883_consen   26 TVECQICFDRIDNNDGVVYVT-DGGTLNLEKMFCADCDKRWRR   67 (134)
T ss_pred             CeeehhhhhhhhcCCCEEEEe-cCCeehHHHHHHHHHHHHHHh
Confidence            578999999999866666666 76      9999999999943

The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.

>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]

Probab=97.84  E-value=9.7e-05  Score=53.66  Aligned_cols=49  Identities=20%  Similarity=0.356  Sum_probs=37.8

Q ss_pred             CCcccccccccccccCCCccccCCCCccccHHHHHHHHhCCCcccccccccc
Q 037529           69 VMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLD  120 (133)
Q Consensus        69 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~  120 (133)
                      .+...||+|+..-.++-.+.+   -|-+||..|+-.++.+.+.||+=..+..
T Consensus       298 ~~~~~CpvClk~r~Nptvl~v---SGyVfCY~Ci~~Yv~~~~~CPVT~~p~~  346 (357)
T KOG0826|consen  298 PDREVCPVCLKKRQNPTVLEV---SGYVFCYPCIFSYVVNYGHCPVTGYPAS  346 (357)
T ss_pred             CccccChhHHhccCCCceEEe---cceEEeHHHHHHHHHhcCCCCccCCcch
Confidence            445789999998766433322   6999999999999999999998655443

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=97.83  E-value=7.5e-06  Score=45.07  Aligned_cols=41  Identities=22%  Similarity=0.579  Sum_probs=27.1

Q ss_pred             cccccccccccccCCCccccCCCCccccHHHHHHHHhC--CCcccc
Q 037529           71 GTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSK--HSVCPV  114 (133)
Q Consensus        71 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~--~~~CP~  114 (133)
                      ...|||.+..|+++  ++... |||+|-++.|.+|+.+  ...||.
T Consensus        11 ~~~CPiT~~~~~~P--V~s~~-C~H~fek~aI~~~i~~~~~~~CPv   53 (57)
T PF11789_consen   11 SLKCPITLQPFEDP--VKSKK-CGHTFEKEAILQYIQRNGSKRCPV   53 (57)
T ss_dssp             -SB-TTTSSB-SSE--EEESS-S--EEEHHHHHHHCTTTS-EE-SC
T ss_pred             ccCCCCcCChhhCC--cCcCC-CCCeecHHHHHHHHHhcCCCCCCC
Confidence            47899999998863  33344 9999999999999944  447998

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=97.83  E-value=8.4e-06  Score=60.40  Aligned_cols=46  Identities=30%  Similarity=0.790  Sum_probs=38.8

Q ss_pred             ccccccccccccc-CCCccccCCCCccccHHHHHHHHhCC--Cccccccc
Q 037529           71 GTECAVCLDEVES-EQPARLVPGCNHGFHLQCADSWLSKH--SVCPVCRA  117 (133)
Q Consensus        71 ~~~C~ICl~~~~~-~~~~~~lp~C~H~fh~~Ci~~wl~~~--~~CP~Cr~  117 (133)
                      +-.|-.|-+.+.- ++.+.-|| |.|+||..|....|.++  .+||-||+
T Consensus       365 ~L~Cg~CGe~~Glk~e~LqALp-CsHIfH~rCl~e~L~~n~~rsCP~Crk  413 (518)
T KOG1941|consen  365 ELYCGLCGESIGLKNERLQALP-CSHIFHLRCLQEILENNGTRSCPNCRK  413 (518)
T ss_pred             hhhhhhhhhhhcCCcccccccc-hhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence            4569999999874 45677899 99999999999999875  48999994

>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]

Probab=97.74  E-value=1.9e-05  Score=66.82  Aligned_cols=55  Identities=33%  Similarity=0.735  Sum_probs=44.2

Q ss_pred             CCcccccccccccccCCCccccCCCCccccHHHHHHHHhCC-----C-----cccccccccccccc
Q 037529           69 VMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKH-----S-----VCPVCRAKLDSHFF  124 (133)
Q Consensus        69 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~-----~-----~CP~Cr~~v~~~~~  124 (133)
                      +.++.|.||+.+--.......|. |+|+||-.|...-|+++     .     +||+|+.++.....
T Consensus      3484 D~DDmCmICFTE~L~AAP~IqL~-C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~~L 3548 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALSAAPAIQLD-CSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINHIVL 3548 (3738)
T ss_pred             ccCceEEEEehhhhCCCcceecC-CccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhhHHH
Confidence            45788999998877777888998 99999999988766542     1     69999998865443

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=97.71  E-value=1.8e-05  Score=59.68  Aligned_cols=54  Identities=30%  Similarity=0.586  Sum_probs=43.5

Q ss_pred             CCCcccccccccccccCCCccccCCCCccccHHHHHHHHhCCCcccccccccccccc
Q 037529           68 LVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSHFF  124 (133)
Q Consensus        68 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~~~  124 (133)
                      ...+..|++|...+.++-..  +. |||.||..|+..|+..+..||.|++.++....
T Consensus        18 ~~~~l~C~~C~~vl~~p~~~--~~-cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~   71 (391)
T KOG0297|consen   18 LDENLLCPICMSVLRDPVQT--TT-CGHRFCAGCLLESLSNHQKCPVCRQELTQAEE   71 (391)
T ss_pred             CcccccCccccccccCCCCC--CC-CCCcccccccchhhccCcCCcccccccchhhc
Confidence            34567899999998764432  34 99999999999999999999999988765443

>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.70  E-value=2.9e-05  Score=53.61  Aligned_cols=51  Identities=27%  Similarity=0.664  Sum_probs=42.1

Q ss_pred             cccccccccccccCCCccccCCCCccccHHHHHHHHhC--------CCccccccccccccc
Q 037529           71 GTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSK--------HSVCPVCRAKLDSHF  123 (133)
Q Consensus        71 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~--------~~~CP~Cr~~v~~~~  123 (133)
                      ...|..|-..+..+|.++..  |.|+||..|+..|-.+        ..+||-|...|.+..
T Consensus        50 ~pNC~LC~t~La~gdt~RLv--CyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~  108 (299)
T KOG3970|consen   50 NPNCRLCNTPLASGDTTRLV--CYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPI  108 (299)
T ss_pred             CCCCceeCCccccCcceeeh--hhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCc
Confidence            45699999999999988764  9999999999999643        347999999886644

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=97.60  E-value=4.4e-05  Score=51.79  Aligned_cols=46  Identities=28%  Similarity=0.558  Sum_probs=38.4

Q ss_pred             CcccccccccccccCCCccccCCCCccccHHHHHHHHhCCCccccccccc
Q 037529           70 MGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKL  119 (133)
Q Consensus        70 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v  119 (133)
                      -...|.||-++|+.   .+++. |||.||..|...=++....|-+|.+..
T Consensus       195 IPF~C~iCKkdy~s---pvvt~-CGH~FC~~Cai~~y~kg~~C~~Cgk~t  240 (259)
T COG5152         195 IPFLCGICKKDYES---PVVTE-CGHSFCSLCAIRKYQKGDECGVCGKAT  240 (259)
T ss_pred             Cceeehhchhhccc---hhhhh-cchhHHHHHHHHHhccCCcceecchhh
Confidence            34689999999987   33554 999999999999888889999998754

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=97.55  E-value=0.0001  Score=38.90  Aligned_cols=44  Identities=23%  Similarity=0.555  Sum_probs=23.0

Q ss_pred             ccccccccccCC-CccccCCCCccccHHHHHHHHh-CCCcccccccc
Q 037529           74 CAVCLDEVESEQ-PARLVPGCNHGFHLQCADSWLS-KHSVCPVCRAK  118 (133)
Q Consensus        74 C~ICl~~~~~~~-~~~~lp~C~H~fh~~Ci~~wl~-~~~~CP~Cr~~  118 (133)
                      |++|.+++...+ ...--+ ||+.++..|...-++ .+..||-||+.
T Consensus         1 cp~C~e~~d~~d~~~~PC~-Cgf~IC~~C~~~i~~~~~g~CPgCr~~   46 (48)
T PF14570_consen    1 CPLCDEELDETDKDFYPCE-CGFQICRFCYHDILENEGGRCPGCREP   46 (48)
T ss_dssp             -TTTS-B--CCCTT--SST-TS----HHHHHHHTTSS-SB-TTT--B
T ss_pred             CCCcccccccCCCccccCc-CCCcHHHHHHHHHHhccCCCCCCCCCC
Confidence            789999985443 333344 889999999999886 47799999985

>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]

Probab=97.52  E-value=2.9e-05  Score=62.39  Aligned_cols=48  Identities=29%  Similarity=0.831  Sum_probs=37.0

Q ss_pred             CcccccccccccccCCCccccCCCCccccHHHHHHHHhCCC-------ccccccc
Q 037529           70 MGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHS-------VCPVCRA  117 (133)
Q Consensus        70 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~-------~CP~Cr~  117 (133)
                      ...+|.||.+.+...+.+---..|.|+||-.||..|-.+..       .||.|..
T Consensus       190 ~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqs  244 (950)
T KOG1952|consen  190 RKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQS  244 (950)
T ss_pred             CceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccc
Confidence            34789999999987775543333889999999999976411       6999984

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]

Probab=97.49  E-value=3.6e-05  Score=55.86  Aligned_cols=52  Identities=19%  Similarity=0.466  Sum_probs=43.0

Q ss_pred             CCcccccccccccccCCCccccCCCCccccHHHHHHHHhCCCccccccccccccc
Q 037529           69 VMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSHF  123 (133)
Q Consensus        69 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~~  123 (133)
                      ....+|.+|-.-+.+.-.+.   .|-|.||++||...+.....||.|...+....
T Consensus        13 n~~itC~LC~GYliDATTI~---eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t~   64 (331)
T KOG2660|consen   13 NPHITCRLCGGYLIDATTIT---ECLHTFCKSCIVKYLEESKYCPTCDIVIHKTH   64 (331)
T ss_pred             ccceehhhccceeecchhHH---HHHHHHHHHHHHHHHHHhccCCccceeccCcc
Confidence            44678999999888754443   39999999999999999999999998776553

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.48  E-value=0.0001  Score=54.22  Aligned_cols=49  Identities=20%  Similarity=0.482  Sum_probs=42.0

Q ss_pred             CCcccccccccccccCCCccccCCCCccccHHHHHHHHhCCCccccccccccc
Q 037529           69 VMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDS  121 (133)
Q Consensus        69 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~  121 (133)
                      +++..|+||...   +......| |+|.-|..||.+-+-+.+.|=.|++++..
T Consensus       420 sEd~lCpICyA~---pi~Avf~P-C~H~SC~~CI~qHlmN~k~CFfCktTv~~  468 (489)
T KOG4692|consen  420 SEDNLCPICYAG---PINAVFAP-CSHRSCYGCITQHLMNCKRCFFCKTTVID  468 (489)
T ss_pred             cccccCcceecc---cchhhccC-CCCchHHHHHHHHHhcCCeeeEecceeee
Confidence            567889999876   33466778 99999999999999999999999998763

>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.47  E-value=3.7e-05  Score=50.52  Aligned_cols=29  Identities=28%  Similarity=0.669  Sum_probs=26.5

Q ss_pred             CcccccccccccccCCCccccCCCCccccH
Q 037529           70 MGTECAVCLDEVESEQPARLVPGCNHGFHL   99 (133)
Q Consensus        70 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~   99 (133)
                      +.-+|.||||++..++.+..|| |--+||+
T Consensus       176 dkGECvICLEdL~~GdtIARLP-CLCIYHK  204 (205)
T KOG0801|consen  176 DKGECVICLEDLEAGDTIARLP-CLCIYHK  204 (205)
T ss_pred             cCCcEEEEhhhccCCCceeccc-eEEEeec
Confidence            3468999999999999999999 9999995

>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A

Probab=97.45  E-value=6.5e-05  Score=39.68  Aligned_cols=40  Identities=28%  Similarity=0.944  Sum_probs=27.2

Q ss_pred             ccccccccccCCCccccCCCC-----ccccHHHHHHHHhC--CCccccc
Q 037529           74 CAVCLDEVESEQPARLVPGCN-----HGFHLQCADSWLSK--HSVCPVC  115 (133)
Q Consensus        74 C~ICl~~~~~~~~~~~lp~C~-----H~fh~~Ci~~wl~~--~~~CP~C  115 (133)
                      |-||+++-.+++ ..+.| |+     -..|.+|+..|+..  +.+|++|
T Consensus         1 CrIC~~~~~~~~-~li~p-C~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C   47 (47)
T PF12906_consen    1 CRICLEGEEEDE-PLISP-CRCKGSMKYVHRSCLERWIRESGNRKCEIC   47 (47)
T ss_dssp             ETTTTEE-SSSS--EE-S-SS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred             CeEeCCcCCCCC-ceecc-cccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence            668999877655 33556 75     47999999999974  5679887

>PHA02862 5L protein; Provisional

Probab=97.40  E-value=0.00014  Score=47.00  Aligned_cols=45  Identities=22%  Similarity=0.672  Sum_probs=33.8

Q ss_pred             cccccccccccccCCCccccCCCC-----ccccHHHHHHHHhC--CCcccccccccc
Q 037529           71 GTECAVCLDEVESEQPARLVPGCN-----HGFHLQCADSWLSK--HSVCPVCRAKLD  120 (133)
Q Consensus        71 ~~~C~ICl~~~~~~~~~~~lp~C~-----H~fh~~Ci~~wl~~--~~~CP~Cr~~v~  120 (133)
                      ++.|=||+++-+++    .-| |+     -.-|.+|+.+|+..  +..||+|+.+..
T Consensus         2 ~diCWIC~~~~~e~----~~P-C~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~   53 (156)
T PHA02862          2 SDICWICNDVCDER----NNF-CGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN   53 (156)
T ss_pred             CCEEEEecCcCCCC----ccc-ccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence            46799999985332    244 64     57999999999975  458999998753

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.37  E-value=0.00015  Score=50.84  Aligned_cols=53  Identities=21%  Similarity=0.355  Sum_probs=47.4

Q ss_pred             ccccccccccccCCCccccCCCCccccHHHHHHHHhCCCcccccccccccccc
Q 037529           72 TECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSHFF  124 (133)
Q Consensus        72 ~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~~~  124 (133)
                      ..||+|.+.+.+.-.+.+|..|||+|..+|++..+.....||+|-+++.....
T Consensus       222 yiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrdi  274 (303)
T KOG3039|consen  222 YICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRDI  274 (303)
T ss_pred             eecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccce
Confidence            56999999999988888887799999999999999999999999998876544

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.37  E-value=8.7e-06  Score=60.20  Aligned_cols=55  Identities=20%  Similarity=0.509  Sum_probs=47.8

Q ss_pred             cccccccccccccC-CCccccCCCCccccHHHHHHHHhCCCcccccccccccccccc
Q 037529           71 GTECAVCLDEVESE-QPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSHFFNA  126 (133)
Q Consensus        71 ~~~C~ICl~~~~~~-~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~~~~~  126 (133)
                      ...|+||.+.++.. +++..+. |||.+|.+|+.+||.....||.||+.++...+..
T Consensus       196 v~sl~I~~~slK~~y~k~~~~~-~g~~~~~~kL~k~L~~~~kl~~~~rel~~~~~e~  251 (465)
T KOG0827|consen  196 VGSLSICFESLKQNYDKISAIV-CGHIYHHGKLSKWLATKRKLPSCRRELPKNGFEE  251 (465)
T ss_pred             HhhhHhhHHHHHHHHHHHHHHh-hcccchhhHHHHHHHHHHHhHHHHhhhhhhhHHH
Confidence            46799999999877 7777787 9999999999999999999999999987765443

>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.35  E-value=0.00013  Score=53.56  Aligned_cols=50  Identities=40%  Similarity=0.723  Sum_probs=34.7

Q ss_pred             cCCCCCcccccccccccccCCCccccCCCCccccHHHHHHHHhCCCccccccccccc
Q 037529           65 GKELVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDS  121 (133)
Q Consensus        65 ~~~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~  121 (133)
                      ..+....+.|.||+++..+   ...+| |||+-+  |..-- +...+||+||+.+..
T Consensus       299 ~~~~~~p~lcVVcl~e~~~---~~fvp-cGh~cc--ct~cs-~~l~~CPvCR~rI~~  348 (355)
T KOG1571|consen  299 FRELPQPDLCVVCLDEPKS---AVFVP-CGHVCC--CTLCS-KHLPQCPVCRQRIRL  348 (355)
T ss_pred             ccccCCCCceEEecCCccc---eeeec-CCcEEE--chHHH-hhCCCCchhHHHHHH
Confidence            3344556789999999776   66788 999855  33332 123459999998754

>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=97.32  E-value=7.2e-05  Score=46.16  Aligned_cols=33  Identities=27%  Similarity=0.635  Sum_probs=27.9

Q ss_pred             CCcccccccccccccCCCccccCCCCccccHHHHH
Q 037529           69 VMGTECAVCLDEVESEQPARLVPGCNHGFHLQCAD  103 (133)
Q Consensus        69 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~  103 (133)
                      .++..|++|-..+.. ....+.| |||+||..|+.
T Consensus        76 ~~~~~C~vC~k~l~~-~~f~~~p-~~~v~H~~C~~  108 (109)
T PF10367_consen   76 TESTKCSVCGKPLGN-SVFVVFP-CGHVVHYSCIK  108 (109)
T ss_pred             CCCCCccCcCCcCCC-ceEEEeC-CCeEEeccccc
Confidence            556789999999987 5577788 99999999974

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].

>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.24  E-value=4.3e-05  Score=54.67  Aligned_cols=42  Identities=26%  Similarity=0.717  Sum_probs=32.8

Q ss_pred             cccccccccccccCCCccccCCCCcc-ccHHHHHHHHhCCCcccccccccc
Q 037529           71 GTECAVCLDEVESEQPARLVPGCNHG-FHLQCADSWLSKHSVCPVCRAKLD  120 (133)
Q Consensus        71 ~~~C~ICl~~~~~~~~~~~lp~C~H~-fh~~Ci~~wl~~~~~CP~Cr~~v~  120 (133)
                      ..-|+||++...+   ...|+ |||. -|.+|-...    ..||+||+.+-
T Consensus       300 ~~LC~ICmDaP~D---CvfLe-CGHmVtCt~CGkrm----~eCPICRqyi~  342 (350)
T KOG4275|consen  300 RRLCAICMDAPRD---CVFLE-CGHMVTCTKCGKRM----NECPICRQYIV  342 (350)
T ss_pred             HHHHHHHhcCCcc---eEEee-cCcEEeehhhcccc----ccCchHHHHHH
Confidence            4679999997544   88898 9994 899995442    38999998764

>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.22  E-value=0.00017  Score=53.91  Aligned_cols=47  Identities=21%  Similarity=0.603  Sum_probs=37.5

Q ss_pred             CcccccccccccccCCCccccCCCCccccHHHHHHHHhC--------CCccccccc
Q 037529           70 MGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSK--------HSVCPVCRA  117 (133)
Q Consensus        70 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~--------~~~CP~Cr~  117 (133)
                      .-..|.||+++..-......+| |+|+||..|...++..        .-.||-++-
T Consensus       183 slf~C~ICf~e~~G~~c~~~lp-C~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C  237 (445)
T KOG1814|consen  183 SLFDCCICFEEQMGQHCFKFLP-CSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC  237 (445)
T ss_pred             hcccceeeehhhcCcceeeecc-cchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence            3478999999987768888999 9999999999999752        226876543

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=97.17  E-value=0.00018  Score=38.89  Aligned_cols=46  Identities=20%  Similarity=0.451  Sum_probs=33.3

Q ss_pred             ccccccccccccCCCccccCCCCccccHHHHHHHHhCCCccccccccccccc
Q 037529           72 TECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSHF  123 (133)
Q Consensus        72 ~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~~  123 (133)
                      ..|..|...   +.+-.++| |||+.+..|.+.+  +-+-||+|.+++....
T Consensus         8 ~~~~~~~~~---~~~~~~~p-CgH~I~~~~f~~~--rYngCPfC~~~~~~~~   53 (55)
T PF14447_consen    8 QPCVFCGFV---GTKGTVLP-CGHLICDNCFPGE--RYNGCPFCGTPFEFDD   53 (55)
T ss_pred             eeEEEcccc---cccccccc-ccceeeccccChh--hccCCCCCCCcccCCC
Confidence            445555544   33455788 9999999998875  5568999999886543

>PHA03096 p28-like protein; Provisional

Probab=97.16  E-value=0.00022  Score=51.51  Aligned_cols=46  Identities=20%  Similarity=0.622  Sum_probs=33.7

Q ss_pred             ccccccccccccC----CCccccCCCCccccHHHHHHHHhC---CCccccccc
Q 037529           72 TECAVCLDEVESE----QPARLVPGCNHGFHLQCADSWLSK---HSVCPVCRA  117 (133)
Q Consensus        72 ~~C~ICl~~~~~~----~~~~~lp~C~H~fh~~Ci~~wl~~---~~~CP~Cr~  117 (133)
                      .+|.||++.....    ..-..|++|.|.|+..|+..|-..   ..+||.||.
T Consensus       179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~  231 (284)
T PHA03096        179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR  231 (284)
T ss_pred             hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence            6799999987643    234467789999999999999753   234555544

>PHA02825 LAP/PHD finger-like protein; Provisional

Probab=97.15  E-value=0.00071  Score=44.49  Aligned_cols=48  Identities=25%  Similarity=0.681  Sum_probs=35.1

Q ss_pred             CCcccccccccccccCCCccccCCCC--c---cccHHHHHHHHhCC--Cccccccccccc
Q 037529           69 VMGTECAVCLDEVESEQPARLVPGCN--H---GFHLQCADSWLSKH--SVCPVCRAKLDS  121 (133)
Q Consensus        69 ~~~~~C~ICl~~~~~~~~~~~lp~C~--H---~fh~~Ci~~wl~~~--~~CP~Cr~~v~~  121 (133)
                      ..+..|=||.++..+  .  .-| |.  .   .-|.+|++.|+..+  ..|++|+.+..-
T Consensus         6 ~~~~~CRIC~~~~~~--~--~~P-C~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i   60 (162)
T PHA02825          6 LMDKCCWICKDEYDV--V--TNY-CNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI   60 (162)
T ss_pred             CCCCeeEecCCCCCC--c--cCC-cccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence            346789999988432  2  234 54  4   57999999999864  479999997643

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=97.13  E-value=0.00061  Score=50.14  Aligned_cols=49  Identities=24%  Similarity=0.608  Sum_probs=38.1

Q ss_pred             CCcccccccccccccCCCccccCCCCccccHHHHHHH--HhCCCccccccccccc
Q 037529           69 VMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSW--LSKHSVCPVCRAKLDS  121 (133)
Q Consensus        69 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~w--l~~~~~CP~Cr~~v~~  121 (133)
                      .+...|.||-+.++-   ..++| |+|..|.-|.-..  |-..+.||+||+.-..
T Consensus        59 Een~~C~ICA~~~TY---s~~~P-C~H~~CH~Ca~RlRALY~~K~C~~CrTE~e~  109 (493)
T COG5236          59 EENMNCQICAGSTTY---SARYP-CGHQICHACAVRLRALYMQKGCPLCRTETEA  109 (493)
T ss_pred             cccceeEEecCCceE---EEecc-CCchHHHHHHHHHHHHHhccCCCccccccce
Confidence            345679999998765   55788 9999999997654  5578899999986433

>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.12  E-value=0.00012  Score=51.19  Aligned_cols=45  Identities=27%  Similarity=0.673  Sum_probs=33.1

Q ss_pred             cccccccccccCCCccccCCCCccccHHHHHHHHhCCCccccccccccc
Q 037529           73 ECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDS  121 (133)
Q Consensus        73 ~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~  121 (133)
                      .|.-|.-.-. ++....+. |+|+||..|...-  ....||+||+++-.
T Consensus         5 hCn~C~~~~~-~~~f~LTa-C~HvfC~~C~k~~--~~~~C~lCkk~ir~   49 (233)
T KOG4739|consen    5 HCNKCFRFPS-QDPFFLTA-CRHVFCEPCLKAS--SPDVCPLCKKSIRI   49 (233)
T ss_pred             EeccccccCC-CCceeeee-chhhhhhhhcccC--Cccccccccceeee
Confidence            4666665544 67777776 9999999997763  22389999998643

>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.06  E-value=0.00038  Score=50.59  Aligned_cols=48  Identities=31%  Similarity=0.742  Sum_probs=39.0

Q ss_pred             cccccccccccccCC---CccccCCCCccccHHHHHHHHhCC-Cccccccccc
Q 037529           71 GTECAVCLDEVESEQ---PARLVPGCNHGFHLQCADSWLSKH-SVCPVCRAKL  119 (133)
Q Consensus        71 ~~~C~ICl~~~~~~~---~~~~lp~C~H~fh~~Ci~~wl~~~-~~CP~Cr~~v  119 (133)
                      -.+|-||-++|...+   ..+.|. |||.++..|+.+.+... ..||.||...
T Consensus         3 ~~~c~~c~~~~s~~~~~~~p~~l~-c~h~~c~~c~~~l~~~~~i~cpfcR~~~   54 (296)
T KOG4185|consen    3 FPECEICNEDYSSEDGDHIPRVLK-CGHTICQNCASKLLGNSRILCPFCRETT   54 (296)
T ss_pred             CCceeecCccccccCcccCCcccc-cCceehHhHHHHHhcCceeeccCCCCcc
Confidence            357999999998764   344565 99999999999988765 4799999873

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]

Probab=97.03  E-value=0.00034  Score=54.03  Aligned_cols=50  Identities=28%  Similarity=0.630  Sum_probs=38.6

Q ss_pred             CCcccccccccccccCCCccccCCCCccccHHHHHHHHhC-----CCcccccccccccc
Q 037529           69 VMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSK-----HSVCPVCRAKLDSH  122 (133)
Q Consensus        69 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~-----~~~CP~Cr~~v~~~  122 (133)
                      .+..+|-+|.+.-++   ..... |.|.||.-|+..++..     +-+||.|...++-.
T Consensus       534 k~~~~C~lc~d~aed---~i~s~-ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD  588 (791)
T KOG1002|consen  534 KGEVECGLCHDPAED---YIESS-CHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID  588 (791)
T ss_pred             cCceeecccCChhhh---hHhhh-hhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence            446789999997544   55666 9999999999998752     45899999876543

>KOG1940 consensus Zn-finger protein [General function prediction only]

Probab=97.02  E-value=0.00036  Score=50.04  Aligned_cols=46  Identities=22%  Similarity=0.618  Sum_probs=38.6

Q ss_pred             cccccccccccccCC-CccccCCCCccccHHHHHHHHhCCCccccccc
Q 037529           71 GTECAVCLDEVESEQ-PARLVPGCNHGFHLQCADSWLSKHSVCPVCRA  117 (133)
Q Consensus        71 ~~~C~ICl~~~~~~~-~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~  117 (133)
                      ...||||.+.+.... .+..++ |||.-|..|.......+.+||+|.+
T Consensus       158 ~~ncPic~e~l~~s~~~~~~~~-CgH~~h~~cf~e~~~~~y~CP~C~~  204 (276)
T KOG1940|consen  158 EFNCPICKEYLFLSFEDAGVLK-CGHYMHSRCFEEMICEGYTCPICSK  204 (276)
T ss_pred             cCCCchhHHHhccccccCCccC-cccchHHHHHHHHhccCCCCCcccc
Confidence            455999999876554 556777 9999999999999887899999998

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.95  E-value=0.00032  Score=50.35  Aligned_cols=47  Identities=23%  Similarity=0.414  Sum_probs=39.2

Q ss_pred             cccccccccccccCCCccccCCCCccccHHHHHHHHhCCCccccccccccc
Q 037529           71 GTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDS  121 (133)
Q Consensus        71 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~  121 (133)
                      .+.|-||-..|..   -+++. |||.||..|...=++....|++|.+....
T Consensus       241 Pf~c~icr~~f~~---pVvt~-c~h~fc~~ca~~~~qk~~~c~vC~~~t~g  287 (313)
T KOG1813|consen  241 PFKCFICRKYFYR---PVVTK-CGHYFCEVCALKPYQKGEKCYVCSQQTHG  287 (313)
T ss_pred             Ccccccccccccc---chhhc-CCceeehhhhccccccCCcceeccccccc
Confidence            3569999999987   33555 99999999999988888999999987644

>PF04641 Rtf2: Rtf2 RING-finger

Probab=96.92  E-value=0.0011  Score=47.56  Aligned_cols=54  Identities=19%  Similarity=0.279  Sum_probs=42.6

Q ss_pred             CCcccccccccccccCCCccccCCCCccccHHHHHHHHhCCCccccccccccccc
Q 037529           69 VMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSHF  123 (133)
Q Consensus        69 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~~  123 (133)
                      .....|||...+|........+..|||+|-..++..- .....||+|-.++....
T Consensus       111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~-k~~~~Cp~c~~~f~~~D  164 (260)
T PF04641_consen  111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL-KKSKKCPVCGKPFTEED  164 (260)
T ss_pred             CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh-cccccccccCCccccCC
Confidence            4457899999999766666555449999999999997 23568999999887553

>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO)

Probab=96.83  E-value=0.00086  Score=34.69  Aligned_cols=41  Identities=29%  Similarity=0.676  Sum_probs=23.9

Q ss_pred             ccccccccccCCCccccCCCCccccHHHHHHHHhCCC--ccccc
Q 037529           74 CAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHS--VCPVC  115 (133)
Q Consensus        74 C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~--~CP~C  115 (133)
                      |.+|.+-...|+...... |+=.+|..|+..++....  .||.|
T Consensus         1 C~~C~~iv~~G~~C~~~~-C~~r~H~~C~~~y~r~~~~~~CP~C   43 (43)
T PF08746_consen    1 CEACKEIVTQGQRCSNRD-CNVRLHDDCFKKYFRHRSNPKCPNC   43 (43)
T ss_dssp             -TTT-SB-SSSEE-SS---S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred             CcccchhHeeeccCCCCc-cCchHHHHHHHHHHhcCCCCCCcCC
Confidence            567777766666554444 888999999999998765  79987

; PDB: 3NW0_A 2CT0_A.

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=96.48  E-value=0.0026  Score=46.78  Aligned_cols=53  Identities=21%  Similarity=0.485  Sum_probs=37.9

Q ss_pred             CCCcccccccccccccCCCc-cccCCCCccccHHHHHHHHh-CCCccccccccccc
Q 037529           68 LVMGTECAVCLDEVESEQPA-RLVPGCNHGFHLQCADSWLS-KHSVCPVCRAKLDS  121 (133)
Q Consensus        68 ~~~~~~C~ICl~~~~~~~~~-~~lp~C~H~fh~~Ci~~wl~-~~~~CP~Cr~~v~~  121 (133)
                      +++++.|+.|+|++...|+- .--| ||-..|.-|...--+ -+..||-||+..+.
T Consensus        11 edeed~cplcie~mditdknf~pc~-cgy~ic~fc~~~irq~lngrcpacrr~y~d   65 (480)
T COG5175          11 EDEEDYCPLCIEPMDITDKNFFPCP-CGYQICQFCYNNIRQNLNGRCPACRRKYDD   65 (480)
T ss_pred             ccccccCcccccccccccCCcccCC-cccHHHHHHHHHHHhhccCCChHhhhhccc
Confidence            34456699999999877744 3455 998888877555422 26689999997654

>PF14446 Prok-RING_1: Prokaryotic RING finger family 1

Probab=96.33  E-value=0.0044  Score=33.47  Aligned_cols=34  Identities=24%  Similarity=0.670  Sum_probs=30.1

Q ss_pred             cccccccccccccCCCccccCCCCccccHHHHHH
Q 037529           71 GTECAVCLDEVESEQPARLVPGCNHGFHLQCADS  104 (133)
Q Consensus        71 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~  104 (133)
                      ...|++|-+.|++++.+.+-|.||=.+|++|.+.
T Consensus         5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~   38 (54)
T PF14446_consen    5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK   38 (54)
T ss_pred             CccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence            4679999999998888888888999999999655

>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.24  E-value=0.0038  Score=41.87  Aligned_cols=31  Identities=29%  Similarity=0.838  Sum_probs=25.1

Q ss_pred             CCccccHHHHHHHHhC----CC-------ccccccccccccc
Q 037529           93 CNHGFHLQCADSWLSK----HS-------VCPVCRAKLDSHF  123 (133)
Q Consensus        93 C~H~fh~~Ci~~wl~~----~~-------~CP~Cr~~v~~~~  123 (133)
                      ||.-||.-|+..||+.    ++       .||.|..++....
T Consensus       190 CgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialKm  231 (234)
T KOG3268|consen  190 CGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALKM  231 (234)
T ss_pred             cCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceeec
Confidence            9999999999999863    11       5999998886543

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=96.17  E-value=0.0034  Score=50.57  Aligned_cols=40  Identities=30%  Similarity=0.666  Sum_probs=29.6

Q ss_pred             cccccccccccCCCccccCCCCccccHHHHHHHHhCCCcccc
Q 037529           73 ECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPV  114 (133)
Q Consensus        73 ~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~  114 (133)
                      .|+||--.+.- ....... |+|+-|.+|...|+.+...||.
T Consensus      1030 ~C~~C~l~V~g-ss~~Cg~-C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1030 QCAICHLAVRG-SSNFCGT-CGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred             eeeeEeeEeec-cchhhcc-ccccccHHHHHHHHhcCCcCCC
Confidence            36666655443 2333454 9999999999999999999984

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=96.07  E-value=0.0039  Score=45.13  Aligned_cols=43  Identities=26%  Similarity=0.610  Sum_probs=33.5

Q ss_pred             ccccccccccccCCCccccCCCCccccHHHHHHHHh-CCCccccccc
Q 037529           72 TECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLS-KHSVCPVCRA  117 (133)
Q Consensus        72 ~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~-~~~~CP~Cr~  117 (133)
                      ..|+.|..-....-+.   |-|||.|+++||..-|. ....||.|.+
T Consensus       275 LkCplc~~Llrnp~kT---~cC~~~fc~eci~~al~dsDf~CpnC~r  318 (427)
T COG5222         275 LKCPLCHCLLRNPMKT---PCCGHTFCDECIGTALLDSDFKCPNCSR  318 (427)
T ss_pred             ccCcchhhhhhCcccC---ccccchHHHHHHhhhhhhccccCCCccc
Confidence            5699998876654333   44999999999997755 5779999987

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]

Probab=95.99  E-value=0.0027  Score=51.12  Aligned_cols=47  Identities=26%  Similarity=0.669  Sum_probs=37.4

Q ss_pred             ccccccccccccCCCccccCCCCccccHHHHHHHHhCC--Cccccccccccccc
Q 037529           72 TECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKH--SVCPVCRAKLDSHF  123 (133)
Q Consensus        72 ~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~--~~CP~Cr~~v~~~~  123 (133)
                      ..|.||++    .+.....+ |||.|+.+|+..-+...  ..||+||..+....
T Consensus       455 ~~c~ic~~----~~~~~it~-c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~  503 (674)
T KOG1001|consen  455 HWCHICCD----LDSFFITR-CGHDFCVECLKKSIQQSENAPCPLCRNVLKEKK  503 (674)
T ss_pred             cccccccc----cccceeec-ccchHHHHHHHhccccccCCCCcHHHHHHHHHH
Confidence            78999999    34466666 99999999999987753  36999999775543

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.93  E-value=0.0033  Score=51.10  Aligned_cols=40  Identities=25%  Similarity=0.761  Sum_probs=31.2

Q ss_pred             ccccccccccccCCCccccCCCCccccHHHHHHHHhCCCccccccc
Q 037529           72 TECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRA  117 (133)
Q Consensus        72 ~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~  117 (133)
                      ..|..|-....-+. + -.. |||.||..|..   .+...||-|+.
T Consensus       841 skCs~C~~~LdlP~-V-hF~-CgHsyHqhC~e---~~~~~CP~C~~  880 (933)
T KOG2114|consen  841 SKCSACEGTLDLPF-V-HFL-CGHSYHQHCLE---DKEDKCPKCLP  880 (933)
T ss_pred             eeecccCCccccce-e-eee-cccHHHHHhhc---cCcccCCccch
Confidence            57999988876533 2 222 99999999999   46678999987

>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.63  E-value=0.0053  Score=50.15  Aligned_cols=36  Identities=25%  Similarity=0.526  Sum_probs=29.7

Q ss_pred             CCcccccccccccccCCCccccCCCCccccHHHHHHHH
Q 037529           69 VMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWL  106 (133)
Q Consensus        69 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl  106 (133)
                      ..+++|.+|.-.+... ...+-| |||.||.+|+..-.
T Consensus       815 ep~d~C~~C~~~ll~~-pF~vf~-CgH~FH~~Cl~~~v  850 (911)
T KOG2034|consen  815 EPQDSCDHCGRPLLIK-PFYVFP-CGHCFHRDCLIRHV  850 (911)
T ss_pred             cCccchHHhcchhhcC-cceeee-ccchHHHHHHHHHH
Confidence            4578899999988764 466777 99999999998874

>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans

Probab=95.60  E-value=0.022  Score=42.57  Aligned_cols=27  Identities=33%  Similarity=0.872  Sum_probs=20.1

Q ss_pred             CccccHHHHHHHHhC-------------CCcccccccccc
Q 037529           94 NHGFHLQCADSWLSK-------------HSVCPVCRAKLD  120 (133)
Q Consensus        94 ~H~fh~~Ci~~wl~~-------------~~~CP~Cr~~v~  120 (133)
                      .-..|-+|+.+|+..             +-.||+||+.+-
T Consensus       312 RPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FC  351 (358)
T PF10272_consen  312 RPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFC  351 (358)
T ss_pred             cchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccce
Confidence            345688999999853             226999999763

They are purported to be transmembrane protein-precursors but their function is unknown.

>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]

Probab=95.31  E-value=0.0067  Score=44.12  Aligned_cols=42  Identities=33%  Similarity=0.851  Sum_probs=29.0

Q ss_pred             cccccccccccCCCccccCCCCccccHHHHHHHHhCCCccccccccc
Q 037529           73 ECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKL  119 (133)
Q Consensus        73 ~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v  119 (133)
                      .|--|=-.+.  .--+..| |.|+||.+|...  ...+.||.|-..|
T Consensus        92 fCd~Cd~PI~--IYGRmIP-CkHvFCl~CAr~--~~dK~Cp~C~d~V  133 (389)
T KOG2932|consen   92 FCDRCDFPIA--IYGRMIP-CKHVFCLECARS--DSDKICPLCDDRV  133 (389)
T ss_pred             eecccCCcce--eeecccc-cchhhhhhhhhc--CccccCcCcccHH
Confidence            3555544332  2335677 999999999766  3567999997765

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.26  E-value=0.016  Score=43.41  Aligned_cols=48  Identities=21%  Similarity=0.411  Sum_probs=40.6

Q ss_pred             CCcccccccccccccCCCccccCCCCccccHHHHHHHHhCCC---ccccccc
Q 037529           69 VMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHS---VCPVCRA  117 (133)
Q Consensus        69 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~---~CP~Cr~  117 (133)
                      -+-..|||=-+.-.++.....|. |||+...+-+....++..   .||+|=.
T Consensus       332 HSvF~CPVlKeqtsdeNPPm~L~-CGHVISkdAlnrLS~ng~~sfKCPYCP~  382 (394)
T KOG2817|consen  332 HSVFICPVLKEQTSDENPPMMLI-CGHVISKDALNRLSKNGSQSFKCPYCPV  382 (394)
T ss_pred             cceeecccchhhccCCCCCeeee-ccceecHHHHHHHhhCCCeeeeCCCCCc
Confidence            34588999999988888888898 999999999999987654   6999953

>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]

Probab=95.14  E-value=0.0044  Score=43.48  Aligned_cols=48  Identities=25%  Similarity=0.596  Sum_probs=36.9

Q ss_pred             Ccccccccccc-ccc-CCCccccCCCCccccHHHHHHHHhCC-Cccc--cccc
Q 037529           70 MGTECAVCLDE-VES-EQPARLVPGCNHGFHLQCADSWLSKH-SVCP--VCRA  117 (133)
Q Consensus        70 ~~~~C~ICl~~-~~~-~~~~~~lp~C~H~fh~~Ci~~wl~~~-~~CP--~Cr~  117 (133)
                      .+..||+|..+ |-. +.++.+-|.|.|-.|.+|.+.-+... ..||  -|.+
T Consensus         9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~k   61 (314)
T COG5220           9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGK   61 (314)
T ss_pred             hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHH
Confidence            45689999976 333 34556666799999999999998875 4899  7765

>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]

Probab=95.09  E-value=0.0061  Score=51.63  Aligned_cols=48  Identities=27%  Similarity=0.636  Sum_probs=38.8

Q ss_pred             CCcccccccccccccCCCccccCCCCccccHHHHHHHHhCCCccccccccc
Q 037529           69 VMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKL  119 (133)
Q Consensus        69 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v  119 (133)
                      .....|.||++.+..--.+..   |||.++..|...|+..+..||.|+...
T Consensus      1151 ~~~~~c~ic~dil~~~~~I~~---cgh~~c~~c~~~~l~~~s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1151 SGHFVCEICLDILRNQGGIAG---CGHEPCCRCDELWLYASSRCPICKSIK 1198 (1394)
T ss_pred             hcccchHHHHHHHHhcCCeee---echhHhhhHHHHHHHHhccCcchhhhh
Confidence            345689999999875333332   999999999999999999999998543

>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.01  E-value=0.011  Score=44.70  Aligned_cols=38  Identities=26%  Similarity=0.596  Sum_probs=28.6

Q ss_pred             Cccccccccccc-ccCCCccccCCCCccccHHHHHHHHhC
Q 037529           70 MGTECAVCLDEV-ESEQPARLVPGCNHGFHLQCADSWLSK  108 (133)
Q Consensus        70 ~~~~C~ICl~~~-~~~~~~~~lp~C~H~fh~~Ci~~wl~~  108 (133)
                      ...+|.||..+. ...+...+.. |+|.||.+|..+.+..
T Consensus       145 ~~~~C~iC~~e~~~~~~~f~~~~-C~H~fC~~C~k~~iev  183 (384)
T KOG1812|consen  145 PKEECGICFVEDPEAEDMFSVLK-CGHRFCKDCVKQHIEV  183 (384)
T ss_pred             ccccCccCccccccHhhhHHHhc-ccchhhhHHhHHHhhh
Confidence            357899999444 4445555555 9999999999998763

>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.97  E-value=0.009  Score=47.43  Aligned_cols=45  Identities=18%  Similarity=0.423  Sum_probs=33.6

Q ss_pred             cccccccccccccCCCc-cccCCCCccccHHHHHHHHhCCCccccccccc
Q 037529           71 GTECAVCLDEVESEQPA-RLVPGCNHGFHLQCADSWLSKHSVCPVCRAKL  119 (133)
Q Consensus        71 ~~~C~ICl~~~~~~~~~-~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v  119 (133)
                      -.-|.||+..|-...-. +.+. |||+.|..|.+..  .+.+|| |+++=
T Consensus        11 ~l~c~ic~n~f~~~~~~Pvsl~-cghtic~~c~~~l--yn~scp-~~~De   56 (861)
T KOG3161|consen   11 LLLCDICLNLFVVQRLEPVSLQ-CGHTICGHCVQLL--YNASCP-TKRDE   56 (861)
T ss_pred             HhhchHHHHHHHHHhcCccccc-ccchHHHHHHHhH--hhccCC-CCccc
Confidence            35699999888765533 3444 9999999999986  667898 66543

>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.77  E-value=0.0092  Score=41.37  Aligned_cols=41  Identities=34%  Similarity=0.796  Sum_probs=30.7

Q ss_pred             ccccccccccCCCccccCCCCcc-ccHHHHHHHHhCCCcccccccccccc
Q 037529           74 CAVCLDEVESEQPARLVPGCNHG-FHLQCADSWLSKHSVCPVCRAKLDSH  122 (133)
Q Consensus        74 C~ICl~~~~~~~~~~~lp~C~H~-fh~~Ci~~wl~~~~~CP~Cr~~v~~~  122 (133)
                      |-.|-+.   +..+..+| |.|. +|..|-..    -..||+|+......
T Consensus       161 Cr~C~~~---~~~VlllP-CrHl~lC~~C~~~----~~~CPiC~~~~~s~  202 (207)
T KOG1100|consen  161 CRKCGER---EATVLLLP-CRHLCLCGICDES----LRICPICRSPKTSS  202 (207)
T ss_pred             ceecCcC---CceEEeec-ccceEeccccccc----CccCCCCcChhhce
Confidence            7777776   45588999 9986 99999554    45699999766543

>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]

Probab=94.70  E-value=0.028  Score=40.56  Aligned_cols=47  Identities=23%  Similarity=0.529  Sum_probs=34.9

Q ss_pred             cccccccc-cccCC-CccccCCCCccccHHHHHHHHhCC-Ccccccccccc
Q 037529           73 ECAVCLDE-VESEQ-PARLVPGCNHGFHLQCADSWLSKH-SVCPVCRAKLD  120 (133)
Q Consensus        73 ~C~ICl~~-~~~~~-~~~~lp~C~H~fh~~Ci~~wl~~~-~~CP~Cr~~v~  120 (133)
                      .||+|-.+ |..++ .+.+-+ |||..|.+|.+.-+..+ ..||.|..-+-
T Consensus         2 ~Cp~CKt~~Y~np~lk~~in~-C~H~lCEsCvd~iF~~g~~~CpeC~~iLR   51 (300)
T KOG3800|consen    2 ACPKCKTDRYLNPDLKLMINE-CGHRLCESCVDRIFSLGPAQCPECMVILR   51 (300)
T ss_pred             CCcccccceecCccceeeecc-ccchHHHHHHHHHHhcCCCCCCcccchhh
Confidence            48999865 44444 333445 99999999999988764 58999987543

>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=94.45  E-value=0.019  Score=30.00  Aligned_cols=29  Identities=34%  Similarity=0.812  Sum_probs=22.0

Q ss_pred             CC-ccccHHHHHHHHhCCCccccccccccc
Q 037529           93 CN-HGFHLQCADSWLSKHSVCPVCRAKLDS  121 (133)
Q Consensus        93 C~-H~fh~~Ci~~wl~~~~~CP~Cr~~v~~  121 (133)
                      |+ |..+-.|+...+..+..||+|..+++.
T Consensus        18 C~dHYLCl~CLt~ml~~s~~C~iC~~~LPt   47 (50)
T PF03854_consen   18 CSDHYLCLNCLTLMLSRSDRCPICGKPLPT   47 (50)
T ss_dssp             -SS-EEEHHHHHHT-SSSSEETTTTEE---
T ss_pred             ecchhHHHHHHHHHhccccCCCcccCcCcc
Confidence            76 999999999999999999999988764

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.

>KOG3002 consensus Zn finger protein [General function prediction only]

Probab=94.41  E-value=0.026  Score=41.26  Aligned_cols=47  Identities=19%  Similarity=0.429  Sum_probs=34.9

Q ss_pred             CCcccccccccccccCCCccccCCCCccccHHHHHHHHhCCCccccccccccc
Q 037529           69 VMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDS  121 (133)
Q Consensus        69 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~  121 (133)
                      .+-.+||||.+.+..+..  +-+ =||+-|.+|-.+   ....||.||-.++.
T Consensus        46 ~~lleCPvC~~~l~~Pi~--QC~-nGHlaCssC~~~---~~~~CP~Cr~~~g~   92 (299)
T KOG3002|consen   46 LDLLDCPVCFNPLSPPIF--QCD-NGHLACSSCRTK---VSNKCPTCRLPIGN   92 (299)
T ss_pred             hhhccCchhhccCcccce--ecC-CCcEehhhhhhh---hcccCCcccccccc
Confidence            344789999999886442  211 379999999764   46789999988873

>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function

Probab=94.39  E-value=0.046  Score=36.07  Aligned_cols=35  Identities=17%  Similarity=0.442  Sum_probs=22.4

Q ss_pred             cccccccccccccCCCcc---------ccCCCCc-cccHHHHHHHH
Q 037529           71 GTECAVCLDEVESEQPAR---------LVPGCNH-GFHLQCADSWL  106 (133)
Q Consensus        71 ~~~C~ICl~~~~~~~~~~---------~lp~C~H-~fh~~Ci~~wl  106 (133)
                      +..|+||||--.+..-+.         --= |+- .=|.+|++++-
T Consensus         2 d~~CpICme~PHNAVLLlCSS~~kgcRpym-c~Ts~rhSNCLdqfk   46 (162)
T PF07800_consen    2 DVTCPICMEHPHNAVLLLCSSHEKGCRPYM-CDTSYRHSNCLDQFK   46 (162)
T ss_pred             CccCceeccCCCceEEEEeccccCCccccc-cCCccchhHHHHHHH
Confidence            568999999865432221         111 553 46899999984

The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.

>KOG3053 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.28  E-value=0.024  Score=40.19  Aligned_cols=53  Identities=23%  Similarity=0.616  Sum_probs=36.8

Q ss_pred             CCCcccccccccccccCCCc-cccCCCC-----ccccHHHHHHHHhCCC--------ccccccccccc
Q 037529           68 LVMGTECAVCLDEVESEQPA-RLVPGCN-----HGFHLQCADSWLSKHS--------VCPVCRAKLDS  121 (133)
Q Consensus        68 ~~~~~~C~ICl~~~~~~~~~-~~lp~C~-----H~fh~~Ci~~wl~~~~--------~CP~Cr~~v~~  121 (133)
                      ...+..|=||++.=+++..- -+-| |.     |=-|..|+..|+..+.        +||-|++.-.-
T Consensus        17 ~e~eR~CWiCF~TdeDn~~a~WV~P-CrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYii   83 (293)
T KOG3053|consen   17 QELERCCWICFATDEDNRLAAWVHP-CRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYII   83 (293)
T ss_pred             cccceeEEEEeccCcccchhhhccc-ccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhee
Confidence            34567899999875544322 2344 63     7799999999997543        59999986543

>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0

Probab=93.35  E-value=0.08  Score=33.96  Aligned_cols=52  Identities=23%  Similarity=0.475  Sum_probs=36.4

Q ss_pred             cccccccccccccCCCccccCCCCccccHHHHHHHHhC---CCcccccccccccc
Q 037529           71 GTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSK---HSVCPVCRAKLDSH  122 (133)
Q Consensus        71 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~---~~~CP~Cr~~v~~~  122 (133)
                      -.+|.||.|.-.+..-+.--.=||-..|.-|....|+.   ...||.|++++-+.
T Consensus        80 lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss  134 (140)
T PF05290_consen   80 LYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS  134 (140)
T ss_pred             ceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence            47899999875543311111119999999998887764   56899999987554

>KOG3899 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.31  E-value=0.05  Score=39.41  Aligned_cols=28  Identities=21%  Similarity=0.572  Sum_probs=21.7

Q ss_pred             CCccccHHHHHHHHh-------------CCCcccccccccc
Q 037529           93 CNHGFHLQCADSWLS-------------KHSVCPVCRAKLD  120 (133)
Q Consensus        93 C~H~fh~~Ci~~wl~-------------~~~~CP~Cr~~v~  120 (133)
                      |.-..|.+|+.+|+.             .+-+||+||+++-
T Consensus       325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fc  365 (381)
T KOG3899|consen  325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFC  365 (381)
T ss_pred             cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceE
Confidence            556788999999973             3447999999763

>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]

Probab=93.09  E-value=0.078  Score=38.67  Aligned_cols=49  Identities=27%  Similarity=0.720  Sum_probs=36.2

Q ss_pred             cccccccccccccCCC-ccccCCCC-----ccccHHHHHHHHh--CCCcccccccccc
Q 037529           71 GTECAVCLDEVESEQP-ARLVPGCN-----HGFHLQCADSWLS--KHSVCPVCRAKLD  120 (133)
Q Consensus        71 ~~~C~ICl~~~~~~~~-~~~lp~C~-----H~fh~~Ci~~wl~--~~~~CP~Cr~~v~  120 (133)
                      +..|=||.++...... ....| |.     +..|..|++.|+.  .+..|.+|.....
T Consensus        78 ~~~cRIc~~~~~~~~~~~l~~p-C~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~  134 (323)
T KOG1609|consen   78 GPICRICHEEDEESNGLLLISP-CSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFI  134 (323)
T ss_pred             CCcEEEEecccccccccccccC-ccccCcHHHHHHHHHHhhhccccCeeeecccccce
Confidence            4789999998664332 34555 65     6789999999988  4568999987543

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.57  E-value=0.095  Score=41.49  Aligned_cols=48  Identities=35%  Similarity=0.892  Sum_probs=38.9

Q ss_pred             CcccccccccccccCCCccccCCCCccccHHHHHHHHhCCCccccccccccccccc
Q 037529           70 MGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSHFFN  125 (133)
Q Consensus        70 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~~~~  125 (133)
                      ..+.|.||+++.    ..+..+ |.   |..|..+|+..+..||+|+..+..+...
T Consensus       478 ~~~~~~~~~~~~----~~~~~~-~~---~~~~l~~~~~~~~~~pl~~~~~~~~~~~  525 (543)
T KOG0802|consen  478 PNDVCAICYQEM----SARITP-CS---HALCLRKWLYVQEVCPLCHTYMKEDDFL  525 (543)
T ss_pred             ccCcchHHHHHH----Hhcccc-cc---chhHHHhhhhhccccCCCchhhhccccc
Confidence            357899999997    355666 88   9999999999999999999877554433

>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]

Probab=92.42  E-value=0.034  Score=44.69  Aligned_cols=48  Identities=25%  Similarity=0.719  Sum_probs=37.9

Q ss_pred             cccccccccccccCCCccccCCCCccccHHHHHHHHhC---CCcccccccccccc
Q 037529           71 GTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSK---HSVCPVCRAKLDSH  122 (133)
Q Consensus        71 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~---~~~CP~Cr~~v~~~  122 (133)
                      ..+|+||++.+.++   ..+. |.|.|+..|+..-+..   ...||+|++.++..
T Consensus        21 ~lEc~ic~~~~~~p---~~~k-c~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~   71 (684)
T KOG4362|consen   21 ILECPICLEHVKEP---SLLK-CDHIFLKFCLNKLFESKKGPKQCALCKSDIEKR   71 (684)
T ss_pred             hccCCceeEEeecc---chhh-hhHHHHhhhhhceeeccCccccchhhhhhhhhh
Confidence            57899999999875   3555 9999999998876654   45899999776543

>PF13901 DUF4206: Domain of unknown function (DUF4206)

Probab=91.85  E-value=0.1  Score=36.04  Aligned_cols=41  Identities=27%  Similarity=0.731  Sum_probs=28.2

Q ss_pred             cccccccccc-----cccCCCccccCCCCccccHHHHHHHHhCCCccccccc
Q 037529           71 GTECAVCLDE-----VESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRA  117 (133)
Q Consensus        71 ~~~C~ICl~~-----~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~  117 (133)
                      +..|-+|-++     |+.+ .+..-+.|+-+||.+|..     +..||-|.+
T Consensus       152 GfiCe~C~~~~~IfPF~~~-~~~~C~~C~~v~H~~C~~-----~~~CpkC~R  197 (202)
T PF13901_consen  152 GFICEICNSDDIIFPFQID-TTVRCPKCKSVFHKSCFR-----KKSCPKCAR  197 (202)
T ss_pred             CCCCccCCCCCCCCCCCCC-CeeeCCcCccccchhhcC-----CCCCCCcHh
Confidence            5778888753     3332 333334599999999976     367999965

>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=90.92  E-value=0.17  Score=39.05  Aligned_cols=53  Identities=19%  Similarity=0.466  Sum_probs=38.5

Q ss_pred             CCcccccccccccccCCCccccCCCCccccHHHHHHHHhCCC--------cc--cccccccccccc
Q 037529           69 VMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHS--------VC--PVCRAKLDSHFF  124 (133)
Q Consensus        69 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~--------~C--P~Cr~~v~~~~~  124 (133)
                      ....+|-||.+.+..  .+..+. |||.|+..|...++.++.        +|  +-|+..+.....
T Consensus        68 ~~~~~c~ic~~~~~~--~~~~~~-c~H~~c~~cw~~yl~~kI~~~~~~~i~cp~~~C~a~v~~~~i  130 (444)
T KOG1815|consen   68 KGDVQCGICVESYDG--EIIGLG-CGHPFCPPCWTGYLGTKIHEGEEAKIKCPAHGCPALVGEDTV  130 (444)
T ss_pred             CccccCCcccCCCcc--hhhhcC-CCcHHHHHHHHHHhhheeeccccccccCCCCCccccCCCcee
Confidence            445789999999876  466666 999999999999987522        34  456665554443

>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]

Probab=90.86  E-value=0.087  Score=41.81  Aligned_cols=43  Identities=30%  Similarity=0.719  Sum_probs=27.4

Q ss_pred             cccccccccc-----cccCCCccccCCCCccccHHHHHHHHhCCCccccccc
Q 037529           71 GTECAVCLDE-----VESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRA  117 (133)
Q Consensus        71 ~~~C~ICl~~-----~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~  117 (133)
                      ...|.+|-..     |+.....+... ||++||..|...   .+..||.|-+
T Consensus       511 gfiCe~Cq~~~iiyPF~~~~~~rC~~-C~avfH~~C~~r---~s~~CPrC~R  558 (580)
T KOG1829|consen  511 GFICELCQHNDIIYPFETRNTRRCST-CLAVFHKKCLRR---KSPCCPRCER  558 (580)
T ss_pred             eeeeeeccCCCcccccccccceeHHH-HHHHHHHHHHhc---cCCCCCchHH
Confidence            5678888321     22222233444 999999999665   4445999965

>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=90.71  E-value=1.2  Score=32.94  Aligned_cols=47  Identities=19%  Similarity=0.356  Sum_probs=38.0

Q ss_pred             CCcccccccccccccCCCccccCCCCccccHHHHHHHHhCCC---cccccc
Q 037529           69 VMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHS---VCPVCR  116 (133)
Q Consensus        69 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~---~CP~Cr  116 (133)
                      -+-..||+=-+.-.+......+. |||+.-.+-++..-+++.   .||.|-
T Consensus       334 Hs~FiCPVlKe~~t~ENpP~ml~-CgHVIskeal~~LS~nG~~~FKCPYCP  383 (396)
T COG5109         334 HSLFICPVLKELCTDENPPVMLE-CGHVISKEALSVLSQNGVLSFKCPYCP  383 (396)
T ss_pred             cceeeccccHhhhcccCCCeeee-ccceeeHHHHHHHhhcCcEEeeCCCCC
Confidence            44578999888877777777887 999999999999876643   699994

>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]

Probab=89.82  E-value=0.58  Score=38.73  Aligned_cols=51  Identities=22%  Similarity=0.560  Sum_probs=38.1

Q ss_pred             CCcccccccccccccCCCccccCCCC-----ccccHHHHHHHHhC--CCccccccccccc
Q 037529           69 VMGTECAVCLDEVESEQPARLVPGCN-----HGFHLQCADSWLSK--HSVCPVCRAKLDS  121 (133)
Q Consensus        69 ~~~~~C~ICl~~~~~~~~~~~lp~C~-----H~fh~~Ci~~wl~~--~~~CP~Cr~~v~~  121 (133)
                      .++..|-||..+=..++.+. -| |.     -..|.+|+.+|+.-  +..|-+|+.++.-
T Consensus        10 ~d~~~CRICr~e~~~d~pLf-hP-CKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~F   67 (1175)
T COG5183          10 EDKRSCRICRTEDIRDDPLF-HP-CKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKF   67 (1175)
T ss_pred             ccchhceeecCCCCCCCcCc-cc-ccccchhHHHHHHHHHHHHhcCCCcceeeecceeee
Confidence            34588999998866666553 34 54     45899999999985  3479999987644

>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world

Probab=89.27  E-value=0.72  Score=33.88  Aligned_cols=28  Identities=18%  Similarity=0.303  Sum_probs=18.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 037529            5 VILALFLPCAGMSLVFIVYLSLLWCASN   32 (133)
Q Consensus         5 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~   32 (133)
                      ++.+++.+++++++++++|++++|+|.+
T Consensus       258 I~aSiiaIliIVLIMvIIYLILRYRRKK  285 (299)
T PF02009_consen  258 IIASIIAILIIVLIMVIIYLILRYRRKK  285 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4556666666667777777777766643

Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].

>PF15050 SCIMP: SCIMP protein

Probab=89.10  E-value=0.7  Score=29.13  Aligned_cols=29  Identities=24%  Similarity=0.354  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 037529            4 SVILALFLPCAGMSLVFIVYLSLLWCASN   32 (133)
Q Consensus         4 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   32 (133)
                      .+++++.++++.+++.+++|...+|..+.
T Consensus         9 WiiLAVaII~vS~~lglIlyCvcR~~lRq   37 (133)
T PF15050_consen    9 WIILAVAIILVSVVLGLILYCVCRWQLRQ   37 (133)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            45566666666666666666665565553

>KOG3113 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.08  E-value=0.34  Score=34.50  Aligned_cols=51  Identities=24%  Similarity=0.270  Sum_probs=38.7

Q ss_pred             cccccccccccccCCCccccCCCCccccHHHHHHHHhCCCccccccccccccc
Q 037529           71 GTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSHF  123 (133)
Q Consensus        71 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~~  123 (133)
                      ...|+|=--+|........+..|||+|-..-+.+-  ..++|++|...+....
T Consensus       111 ~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei--kas~C~~C~a~y~~~d  161 (293)
T KOG3113|consen  111 RFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI--KASVCHVCGAAYQEDD  161 (293)
T ss_pred             eeecccccceecceEEEEEEeccceeccHHHHHHh--hhccccccCCcccccC
Confidence            46799988888766655444449999999888774  5779999998776544

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=88.58  E-value=0.28  Score=40.30  Aligned_cols=50  Identities=16%  Similarity=0.200  Sum_probs=35.8

Q ss_pred             cccccccccccccCC---CccccCCCCccccHHHHHHHHhC------CCcccccccccc
Q 037529           71 GTECAVCLDEVESEQ---PARLVPGCNHGFHLQCADSWLSK------HSVCPVCRAKLD  120 (133)
Q Consensus        71 ~~~C~ICl~~~~~~~---~~~~lp~C~H~fh~~Ci~~wl~~------~~~CP~Cr~~v~  120 (133)
                      .++|.+|.-++.+++   .+-.+..|+|-||..||..|..+      +-.|++|...|.
T Consensus        96 s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~  154 (1134)
T KOG0825|consen   96 SDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVG  154 (1134)
T ss_pred             ccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhh
Confidence            467888888887633   22223349999999999999763      336899987654

>TIGR00622 ssl1 transcription factor ssl1

Probab=87.69  E-value=0.61  Score=29.14  Aligned_cols=46  Identities=17%  Similarity=0.346  Sum_probs=32.4

Q ss_pred             ccccccccccccCC----------CccccCCCCccccHHHHHHHHhCCCccccccc
Q 037529           72 TECAVCLDEVESEQ----------PARLVPGCNHGFHLQCADSWLSKHSVCPVCRA  117 (133)
Q Consensus        72 ~~C~ICl~~~~~~~----------~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~  117 (133)
                      ..|--|+..|....          ....-+.|++.|+.+|=.-+-+.=.+||-|.+
T Consensus        56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~~  111 (112)
T TIGR00622        56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCIH  111 (112)
T ss_pred             CcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCCC
Confidence            56999999886431          11223349999999997776666668999963

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.54  E-value=0.15  Score=41.57  Aligned_cols=45  Identities=16%  Similarity=0.456  Sum_probs=32.1

Q ss_pred             CCcccccccccccccC----CCccccCCCCccccHHHHHHHHhCCCccccc
Q 037529           69 VMGTECAVCLDEVESE----QPARLVPGCNHGFHLQCADSWLSKHSVCPVC  115 (133)
Q Consensus        69 ~~~~~C~ICl~~~~~~----~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~C  115 (133)
                      +.+..|.-|++.....    +.+.++. |||.||..|+..-..++. |-.|
T Consensus       782 ~~e~rc~~c~~~~l~~~~~~~~~~v~~-c~h~yhk~c~~~~~~~~~-~~~~  830 (846)
T KOG2066|consen  782 SVEERCSSCFEPNLPSGAAFDSVVVFH-CGHMYHKECLMMESLRNA-CNIE  830 (846)
T ss_pred             eehhhhhhhcccccccCcccceeeEEE-ccchhhhcccccHHHhcc-cChh
Confidence            3456799999886532    4566776 999999999998765544 4443

>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair

Probab=87.17  E-value=0.44  Score=25.46  Aligned_cols=42  Identities=21%  Similarity=0.609  Sum_probs=19.9

Q ss_pred             ccccccccccCC------CccccCCCCccccHHHHHHHHh-CCCcccccc
Q 037529           74 CAVCLDEVESEQ------PARLVPGCNHGFHLQCADSWLS-KHSVCPVCR  116 (133)
Q Consensus        74 C~ICl~~~~~~~------~~~~lp~C~H~fh~~Ci~~wl~-~~~~CP~Cr  116 (133)
                      |.-|+..|..+.      ....-|.|++.|+-+|=. ++. .=.+||-|-
T Consensus         2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~-fiHE~LH~CPGC~   50 (51)
T PF07975_consen    2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCDV-FIHETLHNCPGCE   50 (51)
T ss_dssp             ETTTTEE-TTS-------EEE--TTTT--B-HHHHH-TTTTTS-SSSTT-
T ss_pred             CccCCCCCCCcccccccCCeEECCCCCCccccCcCh-hhhccccCCcCCC
Confidence            445666665542      233444599999999933 322 234799884

It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.

>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]

Probab=86.69  E-value=0.36  Score=33.48  Aligned_cols=44  Identities=27%  Similarity=0.670  Sum_probs=34.1

Q ss_pred             cccccccccccccCCCccccCCCCccccHHHHHHHHhCCCccccccc
Q 037529           71 GTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRA  117 (133)
Q Consensus        71 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~  117 (133)
                      -..|.+|..-.-.+  ++.-. ||-.+|..|++.++.....||-|..
T Consensus       181 lk~Cn~Ch~LvIqg--~rCg~-c~i~~h~~c~qty~q~~~~cphc~d  224 (235)
T KOG4718|consen  181 LKNCNLCHCLVIQG--IRCGS-CNIQYHRGCIQTYLQRRDICPHCGD  224 (235)
T ss_pred             HHHHhHhHHHhhee--eccCc-ccchhhhHHHHHHhcccCcCCchhc
Confidence            36799998875433  33333 7888999999999999999999953

>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []

Probab=86.61  E-value=2.7  Score=20.92  Aligned_cols=13  Identities=23%  Similarity=0.278  Sum_probs=4.8

Q ss_pred             HHHHHHHHHHHHH
Q 037529            6 ILALFLPCAGMSL   18 (133)
Q Consensus         6 ~l~~~~~~~~~~~   18 (133)
                      +.++++.+..+++
T Consensus         9 Iv~V~vg~~iiii   21 (38)
T PF02439_consen    9 IVAVVVGMAIIII   21 (38)
T ss_pred             HHHHHHHHHHHHH
Confidence            3333333333333

This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.

>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines

Probab=86.14  E-value=0.47  Score=21.62  Aligned_cols=23  Identities=30%  Similarity=0.739  Sum_probs=12.3

Q ss_pred             cccccccccccCCCccccCCCCccc
Q 037529           73 ECAVCLDEVESEQPARLVPGCNHGF   97 (133)
Q Consensus        73 ~C~ICl~~~~~~~~~~~lp~C~H~f   97 (133)
                      .||-|-..+....  ..-|.|||.|
T Consensus         2 ~CP~C~~~V~~~~--~~Cp~CG~~F   24 (26)
T PF10571_consen    2 TCPECGAEVPESA--KFCPHCGYDF   24 (26)
T ss_pred             cCCCCcCCchhhc--CcCCCCCCCC
Confidence            4666666654322  2333477766

Several members are annotated as putative helicases.

>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=86.12  E-value=0.49  Score=25.08  Aligned_cols=40  Identities=28%  Similarity=0.703  Sum_probs=16.8

Q ss_pred             cccccccccccCCCccccCCCCcc--ccHHHHHHHHh----CC-Ccccccccc
Q 037529           73 ECAVCLDEVESEQPARLVPGCNHG--FHLQCADSWLS----KH-SVCPVCRAK  118 (133)
Q Consensus        73 ~C~ICl~~~~~~~~~~~lp~C~H~--fh~~Ci~~wl~----~~-~~CP~Cr~~  118 (133)
                      .|+|-...+..  .++-.. |.|.  |-   ++.|+.    ++ -.||+|+++
T Consensus         4 ~CPls~~~i~~--P~Rg~~-C~H~~CFD---l~~fl~~~~~~~~W~CPiC~~~   50 (50)
T PF02891_consen    4 RCPLSFQRIRI--PVRGKN-CKHLQCFD---LESFLESNQRTPKWKCPICNKP   50 (50)
T ss_dssp             B-TTTSSB-SS--EEEETT---SS--EE---HHHHHHHHHHS---B-TTT---
T ss_pred             eCCCCCCEEEe--CccCCc-CcccceEC---HHHHHHHhhccCCeECcCCcCc
Confidence            57777777654  234443 9887  33   233433    22 279999863

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.

>smart00249 PHD PHD zinc finger

Probab=85.64  E-value=0.46  Score=23.89  Aligned_cols=31  Identities=19%  Similarity=0.475  Sum_probs=21.3

Q ss_pred             cccccccccccCCCccccCCCCccccHHHHHH
Q 037529           73 ECAVCLDEVESEQPARLVPGCNHGFHLQCADS  104 (133)
Q Consensus        73 ~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~  104 (133)
                      .|.+|......+..+.--. |+..||..|+..
T Consensus         1 ~C~~C~~~~~~~~~i~C~~-C~~~~H~~C~~~   31 (47)
T smart00249        1 YCSVCGKPDDGGELLQCDG-CDRWYHQTCLGP   31 (47)
T ss_pred             CcccCCCcCCCCCEEECCC-CCchhhhhhCCC
Confidence            3778887764444444444 999999999755

The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=85.58  E-value=0.63  Score=38.05  Aligned_cols=41  Identities=29%  Similarity=0.495  Sum_probs=29.6

Q ss_pred             ccccccccccccCCCccccCCCCccccHHHHHHHHhCCCcccc
Q 037529           72 TECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPV  114 (133)
Q Consensus        72 ~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~  114 (133)
                      ..|.+|-..+.. ..+..- .|||.=|.+|+.+|+...+-||.
T Consensus       780 ~~CtVC~~vi~G-~~~~c~-~C~H~gH~sh~~sw~~~~s~ca~  820 (839)
T KOG0269|consen  780 AKCTVCDLVIRG-VDVWCQ-VCGHGGHDSHLKSWFFKASPCAK  820 (839)
T ss_pred             cCceeecceeee-eEeecc-cccccccHHHHHHHHhcCCCCcc
Confidence            468888766543 112222 39999999999999998887766

>PF13717 zinc_ribbon_4: zinc-ribbon domain

Probab=84.86  E-value=0.48  Score=23.32  Aligned_cols=14  Identities=21%  Similarity=0.572  Sum_probs=10.5

Q ss_pred             ccccccccccccCC
Q 037529           72 TECAVCLDEVESEQ   85 (133)
Q Consensus        72 ~~C~ICl~~~~~~~   85 (133)
                      .+|+=|...|..+|
T Consensus         3 i~Cp~C~~~y~i~d   16 (36)
T PF13717_consen    3 ITCPNCQAKYEIDD   16 (36)
T ss_pred             EECCCCCCEEeCCH
Confidence            46888888887665

>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association

Probab=84.21  E-value=0.34  Score=26.02  Aligned_cols=14  Identities=36%  Similarity=0.947  Sum_probs=7.6

Q ss_pred             Cccccccccccccc
Q 037529          110 SVCPVCRAKLDSHF  123 (133)
Q Consensus       110 ~~CP~Cr~~v~~~~  123 (133)
                      ..||+|.+++++..
T Consensus        21 ~~CPlC~r~l~~e~   34 (54)
T PF04423_consen   21 GCCPLCGRPLDEEH   34 (54)
T ss_dssp             EE-TTT--EE-HHH
T ss_pred             CcCCCCCCCCCHHH
Confidence            38999999987643

The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.

>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3

Probab=84.08  E-value=0.68  Score=22.31  Aligned_cols=37  Identities=24%  Similarity=0.529  Sum_probs=23.8

Q ss_pred             ccccccccccCCCccccCCCCccccHHHHHHHHhCCCcccccccccc
Q 037529           74 CAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLD  120 (133)
Q Consensus        74 C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~  120 (133)
                      |+.|-+.+..++.. +.. =+..||.+|        ..|..|++.+.
T Consensus         2 C~~C~~~i~~~~~~-~~~-~~~~~H~~C--------f~C~~C~~~L~   38 (39)
T smart00132        2 CAGCGKPIRGGELV-LRA-LGKVWHPEC--------FKCSKCGKPLG   38 (39)
T ss_pred             ccccCCcccCCcEE-EEe-CCccccccC--------CCCcccCCcCc
Confidence            77788877765333 222 467888776        45777776653

Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.

>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=84.04  E-value=0.44  Score=25.52  Aligned_cols=40  Identities=20%  Similarity=0.385  Sum_probs=25.6

Q ss_pred             ccccccccccCCCccccCCCCccccHHHHHHHHhCCCccccccccccccc
Q 037529           74 CAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSHF  123 (133)
Q Consensus        74 C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~~  123 (133)
                      |+-|-..+..++.+.. . -|..||.+|        ..|-.|+++|....
T Consensus         1 C~~C~~~I~~~~~~~~-~-~~~~~H~~C--------f~C~~C~~~l~~~~   40 (58)
T PF00412_consen    1 CARCGKPIYGTEIVIK-A-MGKFWHPEC--------FKCSKCGKPLNDGD   40 (58)
T ss_dssp             BTTTSSBESSSSEEEE-E-TTEEEETTT--------SBETTTTCBTTTSS
T ss_pred             CCCCCCCccCcEEEEE-e-CCcEEEccc--------cccCCCCCccCCCe
Confidence            5667777665443322 2 677888665        56888888776654

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....

>KOG4367 consensus Predicted Zn-finger protein [Function unknown]

Probab=83.72  E-value=0.5  Score=36.36  Aligned_cols=34  Identities=26%  Similarity=0.579  Sum_probs=27.7

Q ss_pred             CcccccccccccccCCCccccCCCCccccHHHHHHHHh
Q 037529           70 MGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLS  107 (133)
Q Consensus        70 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~  107 (133)
                      ++..|+||..-|.+   ..+|| |+|..|..|...-+.
T Consensus         3 eelkc~vc~~f~~e---piil~-c~h~lc~~ca~~~~~   36 (699)
T KOG4367|consen    3 EELKCPVCGSFYRE---PIILP-CSHNLCQACARNILV   36 (699)
T ss_pred             ccccCceehhhccC---ceEee-cccHHHHHHHHhhcc
Confidence            34679999998887   56888 999999999876543

>TIGR01477 RIFIN variant surface antigen, rifin family

Probab=82.60  E-value=2.6  Score=31.65  Aligned_cols=27  Identities=19%  Similarity=0.304  Sum_probs=16.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 037529            5 VILALFLPCAGMSLVFIVYLSLLWCAS   31 (133)
Q Consensus         5 ~~l~~~~~~~~~~~~~~~~~~~~~~~~   31 (133)
                      ++.|++.+++++++.+++|++++|+|.
T Consensus       312 IiaSiIAIvvIVLIMvIIYLILRYRRK  338 (353)
T TIGR01477       312 IIASIIAILIIVLIMVIIYLILRYRRK  338 (353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            445555555556666666666665554

This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.

>PTZ00046 rifin; Provisional

Probab=81.66  E-value=2.9  Score=31.46  Aligned_cols=27  Identities=19%  Similarity=0.322  Sum_probs=15.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 037529            5 VILALFLPCAGMSLVFIVYLSLLWCAS   31 (133)
Q Consensus         5 ~~l~~~~~~~~~~~~~~~~~~~~~~~~   31 (133)
                      ++.|++.+++++++.+++|++++|+|.
T Consensus       317 IiaSiiAIvVIVLIMvIIYLILRYRRK  343 (358)
T PTZ00046        317 IIASIVAIVVIVLIMVIIYLILRYRRK  343 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            445555555555666666666655554

>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]

Probab=81.63  E-value=1.1  Score=33.28  Aligned_cols=46  Identities=26%  Similarity=0.463  Sum_probs=33.6

Q ss_pred             cccccccccccccCCCccccCCCCccccHHHHHHHHhCCCccccccc
Q 037529           71 GTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRA  117 (133)
Q Consensus        71 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~  117 (133)
                      ...|-.|.++.......+.-. |.|+||.+|=.--=+.=..||.|..
T Consensus       330 ~~~Cf~C~~~~~~~~~y~C~~-Ck~~FCldCDv~iHesLh~CpgCeh  375 (378)
T KOG2807|consen  330 SRFCFACQGELLSSGRYRCES-CKNVFCLDCDVFIHESLHNCPGCEH  375 (378)
T ss_pred             CcceeeeccccCCCCcEEchh-ccceeeccchHHHHhhhhcCCCcCC
Confidence            455999988877766666665 9999999995443333457999974

>KOG2068 consensus MOT2 transcription factor [Transcription]

Probab=81.62  E-value=1.8  Score=32.10  Aligned_cols=50  Identities=20%  Similarity=0.599  Sum_probs=36.8

Q ss_pred             ccccccccccccCC-CccccCCCCccccHHHHHHHHhCCCcccccccccccc
Q 037529           72 TECAVCLDEVESEQ-PARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSH  122 (133)
Q Consensus        72 ~~C~ICl~~~~~~~-~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~  122 (133)
                      .+|+||-++....+ ...--| |||..|-.|...-...+.+||.||++....
T Consensus       250 ~s~p~~~~~~~~~d~~~lP~~-~~~~~~l~~~~t~~~~~~~~~~~rk~~~~~  300 (327)
T KOG2068|consen  250 PSCPICYEDLDLTDSNFLPCP-CGFRLCLFCHKTISDGDGRCPGCRKPYERN  300 (327)
T ss_pred             CCCCCCCCccccccccccccc-ccccchhhhhhcccccCCCCCccCCccccC
Confidence            78999999875444 233344 888888888888777888999999765443

>PTZ00370 STEVOR; Provisional

Probab=81.52  E-value=2.6  Score=30.75  Aligned_cols=23  Identities=17%  Similarity=0.274  Sum_probs=13.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhccC
Q 037529           11 LPCAGMSLVFIVYLSLLWCASND   33 (133)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~   33 (133)
                      ++.+++++++++.++|++++|.+
T Consensus       262 lvllil~vvliilYiwlyrrRK~  284 (296)
T PTZ00370        262 LVLLILAVVLIILYIWLYRRRKN  284 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcc
Confidence            44455566666666666666644

>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=80.74  E-value=0.54  Score=26.39  Aligned_cols=37  Identities=11%  Similarity=0.298  Sum_probs=17.5

Q ss_pred             CCcccccccccccccCCCccccCCCCccccHHHHHHH
Q 037529           69 VMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSW  105 (133)
Q Consensus        69 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~w  105 (133)
                      .+...|.+|...|.--..-..-..||++|+.+|....
T Consensus         7 ~~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~   43 (69)
T PF01363_consen    7 SEASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQR   43 (69)
T ss_dssp             GG-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EE
T ss_pred             CCCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCE
Confidence            3457899999999643211111239999999997654

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....

>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;

Probab=80.49  E-value=1.7  Score=23.18  Aligned_cols=36  Identities=14%  Similarity=0.381  Sum_probs=24.2

Q ss_pred             ccccccccccccCCCccccCCCCccccHHHHHHHHh
Q 037529           72 TECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLS  107 (133)
Q Consensus        72 ~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~  107 (133)
                      ..|.+|-..|.....-..-..||++|+.+|......
T Consensus         3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~   38 (57)
T cd00065           3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIP   38 (57)
T ss_pred             CcCcccCccccCCccccccCcCcCCcChHHcCCeee
Confidence            568899888765332222224999999999876543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	133
1iym_A	55	Ring-H2 Finger Domain Of El5 Length = 55		5e-12
1x4j_A	75	Solution Structure Of Ring Finger In Ring Finger Pr		9e-08
2ect_A	78	Solution Structure Of The Zinc Finger, C3hc4 Type (		9e-06
2kiz_A	69	Solution Structure Of Arkadia Ring-H2 Finger Domain		5e-05
2ep4_A	74	Solution Structure Of Ring Finger From Human Ring F		1e-04
2ecn_A	70	Solution Structure Of The Ring Domain Of The Human		2e-04
2l0b_A	91	Solution Nmr Structure Of Zinc Finger Domain Of E3		6e-04

>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5 Length = 55

Iteration: 1
 Score = 66.2 bits (160), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 27/46 (58%), Positives = 32/46 (69%)
Query: 71  GTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCR 116
           G ECAVCL E+E  + AR +P C HGFH +C D WL  HS CP+CR
Sbjct: 5   GVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCR 50

>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein 38 Length = 75

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 72  TECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRA 117
           T C VC+ + ES Q  R++P CNH FH +C D WL  +  CP+CRA
Sbjct: 24  TLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRA 68

>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring Finger) Domain Of Ring Finger Protein 126 Length = 78

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 64  SGKELVMGT--ECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKL 119
           SG E  +G+  EC VC ++    +  R +P CNH FH  C   WL +H  CPVCR  L
Sbjct: 6   SGTEEHVGSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSL 62

>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain Length = 69

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 73  ECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSHF 123
           +C +CL  +E  +  R +P C H FH  C D WL  +  CP+CR  +++  
Sbjct: 16  KCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQL 65

>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger Protein 24 Length = 74

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 66  KELVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVC 115
           KEL +   CAVCL++ +      + P C H FH +C   WL    VCP+C
Sbjct: 10  KELNLHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLC 58

>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring Finger Protein 141 Length = 70

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
Query: 66  KELVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSHFFN 125
           K+L    EC +C+D       A L+  C H F  +C D W  +H  CP+CR ++      
Sbjct: 10  KQLTDEEECCICMDGR-----ADLILPCAHSFCQKCIDKWSDRHRNCPICRLQM----TG 60
Query: 126 ALESDNP 132
           A ES  P
Sbjct: 61  ANESSGP 67

>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3 Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens, Northeast Structural Genomics Consortium (Nesg) Target Hr4710b Length = 91

Iteration: 1
 Score = 39.7 bits (91), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 53  SASELDKLPKI--SGKELVMGTE--CAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSK 108
           S   +D LP+I  +     +G E  C +C  E      A  +P C+H FH  C   WL K
Sbjct: 18  SKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQK 76
Query: 109 HSVCPVCR 116
              CPVCR
Sbjct: 77  SGTCPVCR 84

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	133
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	1e-20
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	1e-20
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	4e-20
2ect_A	78	Ring finger protein 126; metal binding protein, st	1e-17
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	3e-17
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	2e-15
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	4e-14
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	2e-13
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	2e-12
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	7e-12
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	3e-11
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	6e-10
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	8e-10
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	5e-09
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	5e-09
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	7e-09
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	2e-07
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	7e-07
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	1e-06
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	3e-06
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	2e-05
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	2e-05
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	1e-04
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	3e-05
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	3e-05
3nw0_A	238	Non-structural maintenance of chromosomes element	4e-05
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	4e-05
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	1e-04
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	3e-04
4epo_C	149	E3 ubiquitin-protein ligase RNF8; coiled-coil, E3	4e-04

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 Length = 55

 Score = 78.0 bits (193), Expect = 1e-20
 Identities = 27/49 (55%), Positives = 33/49 (67%)

Query: 71  GTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKL 119
           G ECAVCL E+E  + AR +P C HGFH +C D WL  HS CP+CR  +
Sbjct: 5   GVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score = 78.5 bits (194), Expect = 1e-20
 Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 4/71 (5%)

Query: 53  SASELDKLPKI---SGKELVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKH 109
           S+    +LP             T C VC+ + ES Q  R++P CNH FH +C D WL  +
Sbjct: 2   SSGSSGQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKAN 60

Query: 110 SVCPVCRAKLD 120
             CP+CRA   
Sbjct: 61  RTCPICRADSG 71

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} Length = 91

 Score = 77.8 bits (192), Expect = 4e-20
 Identities = 23/73 (31%), Positives = 29/73 (39%), Gaps = 5/73 (6%)

Query: 51  GLSASELDKLPKI----SGKELVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWL 106
             S   +D LP+I        +     C +C  E      A  +P C+H FH  C   WL
Sbjct: 16  PASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWL 74

Query: 107 SKHSVCPVCRAKL 119
            K   CPVCR   
Sbjct: 75  QKSGTCPVCRCMF 87

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78

 Score = 70.9 bits (174), Expect = 1e-17
 Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 61  PKISGKELVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLD 120
              + + +  G EC VC ++    +  R +P CNH FH  C   WL +H  CPVCR  L 
Sbjct: 5   SSGTEEHVGSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLT 63

Query: 121 SH 122
             
Sbjct: 64  GQ 65

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} Length = 69

 Score = 69.7 bits (171), Expect = 3e-17
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 59  KLPKISGKELVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAK 118
           K     G E     +C +CL  +E  +  R +P C H FH  C D WL  +  CP+CR  
Sbjct: 2   KQDGEEGTEEDTEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVD 60

Query: 119 LDSH 122
           +++ 
Sbjct: 61  IEAQ 64

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 74

 Score = 65.2 bits (159), Expect = 2e-15
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 66  KELVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKL 119
           KEL +   CAVCL++ +      + P C H FH +C   WL    VCP+C   +
Sbjct: 10  KELNLHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPV 62

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Length = 55

 Score = 61.5 bits (150), Expect = 4e-14
 Identities = 12/48 (25%), Positives = 22/48 (45%)

Query: 70  MGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRA 117
             + C +CL+++ + +    V  C H  H  C +  L +   CP+C  
Sbjct: 4   GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSG 51

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 60.3 bits (146), Expect = 2e-13
 Identities = 14/47 (29%), Positives = 22/47 (46%)

Query: 74  CAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLD 120
           C  C  E + E    +   CNH FH  C   W+ +++ CP+C+    
Sbjct: 29  CLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWV 75

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 57.0 bits (138), Expect = 2e-12
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 5/58 (8%)

Query: 64  SGKELVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDS 121
             K+L    EC +C+D         ++P C H F  +C D W  +H  CP+CR ++  
Sbjct: 8   RVKQLTDEEECCICMDGRA----DLILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTG 60

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Length = 68

 Score = 55.9 bits (135), Expect = 7e-12
 Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 4/59 (6%)

Query: 73  ECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSHFFNALESDN 131
            C +CL++      +  +P C H F   C   W+ ++  CP+C+  ++S   + +ESD+
Sbjct: 7   RCPICLEDPS--NYSMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVES-VVHTIESDS 61

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69

 Score = 54.5 bits (131), Expect = 3e-11
 Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 3/53 (5%)

Query: 72  TECAVCLDEVESEQPARLVPG---CNHGFHLQCADSWLSKHSVCPVCRAKLDS 121
             C +C+D          +     C H F  QC    L   + CP CR K++ 
Sbjct: 16  VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71

 Score = 51.0 bits (122), Expect = 6e-10
 Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 3/53 (5%)

Query: 73  ECAVCLDEVESEQPARLVPG---CNHGFHLQCADSWLSKHSVCPVCRAKLDSH 122
            C +C+D          +     C H F  QC    L   + CP CR K++  
Sbjct: 12  SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 64

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64

 Score = 50.5 bits (121), Expect = 8e-10
 Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 3/54 (5%)

Query: 72  TECAVCLDEVESEQPARLVPG---CNHGFHLQCADSWLSKHSVCPVCRAKLDSH 122
             C +C+D          +     C H F  QC    L   + CP CR K++  
Sbjct: 4   VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 57

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A Length = 106

 Score = 49.8 bits (118), Expect = 5e-09
 Identities = 15/49 (30%), Positives = 19/49 (38%)

Query: 70  MGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAK 118
           +  EC        SE+       CNH FH  C   WL    VCP+   +
Sbjct: 50  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNRE 98

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100

 Score = 49.5 bits (118), Expect = 5e-09
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 4/51 (7%)

Query: 73  ECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSK-HSVCPVCRAKLDSH 122
            C +C++++     ARL P C+      C   WL++  + CP CRA L   
Sbjct: 24  RCFICMEKLRD---ARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLR 71

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus} Length = 117

 Score = 49.5 bits (117), Expect = 7e-09
 Identities = 15/49 (30%), Positives = 19/49 (38%)

Query: 70  MGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAK 118
           +  EC        SE+       CNH FH  C   WL    VCP+   +
Sbjct: 61  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNRE 109

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 74

 Score = 44.5 bits (105), Expect = 2e-07
 Identities = 10/53 (18%), Positives = 14/53 (26%), Gaps = 5/53 (9%)

Query: 73  ECAVCLDEVESEQPARLVPGCNHGFHLQCADSWL--SKHSVCPVCRAKLDSHF 123
            C +C   +   Q       C    HL C   +   +    CP C        
Sbjct: 17  ICNICHSLLIQGQSC---ETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI 66

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389

 Score = 45.9 bits (108), Expect = 7e-07
 Identities = 14/92 (15%), Positives = 29/92 (31%), Gaps = 7/92 (7%)

Query: 32  NDNDNNGDVRLPVKAAAEGGLSASELDKLPKISGKELVMGTECAVCLDEVESEQPARLVP 91
           +  + N D+    +   +  +  ++                 C +C +  +     ++ P
Sbjct: 295 DGRNQNPDLTGLCEPTPQDHIKVTQEQYELYCEMGS--TFQLCKICAENDKD---VKIEP 349

Query: 92  GCNHGFHLQCADSWLSKHS-VCPVCRAKLDSH 122
            C H     C  SW       CP CR ++   
Sbjct: 350 -CGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 42.1 bits (99), Expect = 1e-06
 Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 4/57 (7%)

Query: 73  ECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSHFFNALES 129
           ECA+CL       P  L   C H F   C          C +CR ++   F ++  S
Sbjct: 17  ECAICLQTCV--HPVSL--PCKHVFCYLCVKGASWLGKRCALCRQEIPEDFLDSGPS 69

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 41.4 bits (97), Expect = 3e-06
 Identities = 17/82 (20%), Positives = 25/82 (30%), Gaps = 14/82 (17%)

Query: 47  AAEGGLSASELDKLPKISGKELVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWL 106
            + G    SE +++P            C +C    ++  P      C H F   CA    
Sbjct: 1   GSSGSSGGSEEEEIPF----------RCFICRQAFQN--PVVT--KCRHYFCESCALEHF 46

Query: 107 SKHSVCPVCRAKLDSHFFNALE 128
                C +C       F  A E
Sbjct: 47  RATPRCYICDQPTGGIFNPAKE 68

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 Length = 114

 Score = 40.2 bits (93), Expect = 2e-05
 Identities = 11/64 (17%), Positives = 22/64 (34%), Gaps = 19/64 (29%)

Query: 73  ECAVCLDEVES--------------EQPARLVPGCNHGFHLQCADSWLSKHS-----VCP 113
           +C +C++++                      +  C+H FHL C  +     +      CP
Sbjct: 27  DCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCP 86

Query: 114 VCRA 117
            C+ 
Sbjct: 87  SCKT 90

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133

 Score = 40.2 bits (93), Expect = 2e-05
 Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 3/54 (5%)

Query: 70  MGTECAVCLDEVESEQPARLVP---GCNHGFHLQCADSWLSKHSVCPVCRAKLD 120
               C +C+D          +     C H F  QC    L   + CP CR K++
Sbjct: 71  GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 124

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133

 Score = 38.2 bits (88), Expect = 1e-04
 Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 3/56 (5%)

Query: 73  ECAVCLDEVESEQPARLVP---GCNHGFHLQCADSWLSKHSVCPVCRAKLDSHFFN 125
            C +C+D          +     C H F  QC    L   + CP CR K++   ++
Sbjct: 9   SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYH 64

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster} Length = 381

 Score = 41.4 bits (96), Expect = 3e-05
 Identities = 16/71 (22%), Positives = 20/71 (28%), Gaps = 15/71 (21%)

Query: 72  TECAVCLDEVESEQPARLV----PGCNHGFHLQCADSWL-----------SKHSVCPVCR 116
             C +C           LV      C    H  C + W                 CP C+
Sbjct: 309 LRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCK 368

Query: 117 AKLDSHFFNAL 127
           AKL + F   L
Sbjct: 369 AKLSTSFAALL 379

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 39.0 bits (91), Expect = 3e-05
 Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 3/47 (6%)

Query: 73  ECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKL 119
            C++C   +     A  +  C H F   C        + CP C   +
Sbjct: 17  LCSICKGYLID---ATTITECLHTFCKSCIVRHFYYSNRCPKCNIVV 60

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens} Length = 238

 Score = 40.5 bits (94), Expect = 4e-05
 Identities = 9/50 (18%), Positives = 14/50 (28%), Gaps = 5/50 (10%)

Query: 73  ECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKH--SVCPVCRAKLD 120
            C +C   +      +    C    HL C   +   +    CP C     
Sbjct: 182 ICNICHSLLI---QGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 228

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108

 Score = 39.0 bits (91), Expect = 4e-05
 Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 3/65 (4%)

Query: 57  LDKLPKISGKELVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCR 116
           + +  +I   EL     C +C           ++  C H F   C   +L     CP+C 
Sbjct: 1   MHRTTRIKITELNPHLMCVLCGGYFI--DATTIIE-CLHSFCKTCIVRYLETSKYCPICD 57

Query: 117 AKLDS 121
            ++  
Sbjct: 58  VQVHK 62

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99

 Score = 37.8 bits (88), Expect = 1e-04
 Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 3/46 (6%)

Query: 74  CAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKL 119
           C +C +       A ++P C+H +   C   +LS  + CP C   +
Sbjct: 25  CGICFEYFNI---AMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTV 67

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Length = 78

 Score = 36.2 bits (83), Expect = 3e-04
 Identities = 10/51 (19%), Positives = 18/51 (35%), Gaps = 1/51 (1%)

Query: 71  GTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSV-CPVCRAKLD 120
             EC +C++ +E +        C +     C     +  +  CP CR    
Sbjct: 11  PVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYP 61

>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149

 Score = 36.9 bits (85), Expect = 4e-04
 Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 4/53 (7%)

Query: 73  ECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSHFFN 125
           +C +C +     +   L   C H F   C + W+ +   CP+CR  + S  ++
Sbjct: 66  QCIICSEYFI--EAVTL--NCAHSFCSYCINEWMKRKIECPICRKDIKSKTYS 114

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	133
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	99.85
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	99.8
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	99.79
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	99.79
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	99.79
2ect_A	78	Ring finger protein 126; metal binding protein, st	99.79
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	99.77
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	99.73
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	99.72
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	99.71
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	99.71
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	99.69
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	99.69
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	99.69
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	99.68
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	99.67
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	99.67
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	99.66
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	99.65
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	99.62
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	99.61
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	99.6
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	99.6
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	99.6
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.58
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	99.58
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	99.56
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	99.56
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	99.55
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	99.55
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	99.55
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	99.54
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	99.54
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	99.52
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	99.52
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	99.51
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.51
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	99.5
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	99.5
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	99.48
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	99.47
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	99.47
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	99.45
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	99.44
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	99.43
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	99.43
1z6u_A	150	NP95-like ring finger protein isoform B; structura	99.41
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	99.4
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	99.4
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	99.36
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	99.35
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	99.35
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	99.34
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	99.33
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	99.32
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	99.3
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	99.28
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	99.25
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	99.24
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	99.19
2ea5_A	68	Cell growth regulator with ring finger domain prot	99.19
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	99.17
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	99.17
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	99.16
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	99.16
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.11
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	99.05
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	98.89
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	98.87
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	98.84
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	98.61
3nw0_A	238	Non-structural maintenance of chromosomes element	98.45
2ko5_A	99	Ring finger protein Z; lassa fever virus-Z, negati	97.4
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	97.05
2lri_C	66	Autoimmune regulator; Zn binding protein domain, a	96.3
1wil_A	89	KIAA1045 protein; ring finger domain, structural g	95.65
2l5u_A	61	Chromodomain-helicase-DNA-binding protein 4; CHD4,	94.33
2k16_A	75	Transcription initiation factor TFIID subunit 3; p	93.59
1f62_A	51	Transcription factor WSTF; Zn-finger; NMR {Homo sa	93.31
1we9_A	64	PHD finger family protein; structural genomics, PH	92.8
3lqh_A	183	Histone-lysine N-methyltransferase MLL; PHD finger	92.54
1wep_A	79	PHF8; structural genomics, PHD domain, riken struc	92.41
2yql_A	56	PHD finger protein 21A; PHD domain, structural gen	92.39
2ysm_A	111	Myeloid/lymphoid or mixed-lineage leukemia protein	92.37
1xwh_A	66	Autoimmune regulator; PHD domain, Zn binding domai	92.31
1mm2_A	61	MI2-beta; PHD, zinc finger, protein scaffold, DNA	92.24
3m62_A	968	Ubiquitin conjugation factor E4; armadillo-like re	90.91
2ku3_A	71	Bromodomain-containing protein 1; PHD finger, chro	90.6
3o36_A	184	Transcription intermediary factor 1-alpha; TRIM24,	90.54
2lbm_A	142	Transcriptional regulator ATRX; metal binding prot	90.28
2l43_A	88	N-teminal domain from histone H3.3, linker, PHD1 f	90.09
2co8_A	82	NEDD9 interacting protein with calponin homology a	89.89
2yw8_A	82	RUN and FYVE domain-containing protein 1; structur	89.83
3u5n_A	207	E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b	89.59
2puy_A	60	PHD finger protein 21A; PHD finger, histone CODE,	89.45
1fp0_A	88	KAP-1 corepressor; PHD domain, C3HC4 type zinc bin	89.2
3v43_A	112	Histone acetyltransferase KAT6A; MOZ, PHD finger,	89.04
2lv9_A	98	Histone-lysine N-methyltransferase MLL5; zinc fing	89.0
2vpb_A	65	Hpygo1, pygopus homolog 1; gene regulation, WNT si	87.87
3v43_A	112	Histone acetyltransferase KAT6A; MOZ, PHD finger,	87.61
2e6r_A	92	Jumonji/ARID domain-containing protein 1D; PHD dom	87.21
1z2q_A	84	LM5-1; membrane protein, FYVE domain, zinc-finger;	87.05
3ql9_A	129	Transcriptional regulator ATRX; zinc finger, trans	86.44
2knc_A	54	Integrin alpha-IIB; transmembrane signaling, prote	85.68
1z60_A	59	TFIIH basal transcription factor complex P44 subun	85.67
3o70_A	68	PHD finger protein 13; PHF13, structural genomics	85.63
2ro1_A	189	Transcription intermediary factor 1-beta; KAP, TIF	85.57
2xb1_A	105	Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro;	84.8
3t7l_A	90	Zinc finger FYVE domain-containing protein 16; str	84.45
2l8s_A	54	Integrin alpha-1; transmembrane region, detergent	84.3
1wev_A	88	Riken cDNA 1110020M19; structural genomics, PHD do	83.59
1g47_A	77	Pinch protein; LIM domain, Zn finger, cell adhesio	83.39
2ri7_A	174	Nucleosome-remodeling factor subunit BPTF; zinc fi	83.25
1weo_A	93	Cellulose synthase, catalytic subunit (IRX3); stru	83.03
1vfy_A	73	Phosphatidylinositol-3-phosphate binding FYVE doma	83.02
2gmg_A	105	Hypothetical protein PF0610; winged-helix like pro	82.26
1joc_A	125	EEA1, early endosomal autoantigen 1; FYVE domain,	82.24
1wyh_A	72	SLIM 2, skeletal muscle LIM-protein 2; structural	82.0
2cu8_A	76	Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein	81.7
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	80.88
2yt5_A	66	Metal-response element-binding transcription facto	80.77
1x4u_A	84	Zinc finger, FYVE domain containing 27 isoform B;	80.56
1y02_A	120	CARP2, FYVE-ring finger protein sakura; zinc-bindi	80.43
1x4l_A	72	Skeletal muscle LIM-protein 3; LIM domain, structu	80.4
1wfk_A	88	Zinc finger, FYVE domain containing 19; riken stru	80.35
3shb_A	77	E3 ubiquitin-protein ligase UHRF1; unmodified hist	80.11
1x61_A	72	Thyroid receptor interacting protein 6; LIM domain	80.02
2kgg_A	52	Histone demethylase jarid1A; PHD finger, histone m	80.02

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=99.85  E-value=8.6e-22  Score=118.65  Aligned_cols=78  Identities=32%  Similarity=0.618  Sum_probs=66.5

Q ss_pred             CcccccCCCCCHHHHhhCCCcccCC----CCCcccccccccccccCCCccccCCCCccccHHHHHHHHhCCCcccccccc
Q 037529           43 PVKAAAEGGLSASELDKLPKISGKE----LVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAK  118 (133)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~  118 (133)
                      ........+++++.++.+|......    ..++.+|+||+++|..++.++.+| |||.||..||..|+..+.+||+||+.
T Consensus         8 ~~~~~~~~~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr~~   86 (91)
T 2l0b_A            8 HSHMVANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCRCM   86 (91)
T ss_dssp             SCCSSCCCCCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTTTCBCTTTCCB
T ss_pred             CCCCcCCCCCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHcCCcCcCcCcc
Confidence            3455567899999999999765433    245678999999999999899999 99999999999999999999999998


Q ss_pred             ccc
Q 037529          119 LDS  121 (133)
Q Consensus       119 v~~  121 (133)
                      +..
T Consensus        87 ~~~   89 (91)
T 2l0b_A           87 FPP   89 (91)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            765

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.80  E-value=4e-21  Score=111.71  Aligned_cols=53  Identities=43%  Similarity=0.971  Sum_probs=48.5

Q ss_pred             CCcccccccccccccCCCccccCCCCccccHHHHHHHHhCCCcccccccccccc
Q 037529           69 VMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSH  122 (133)
Q Consensus        69 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~  122 (133)
                      .++.+|+||+++|..++.++.+| |||.||.+||..|+..+.+||+||+.+.+.
T Consensus        21 ~~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~   73 (75)
T 1x4j_A           21 SEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGPS   73 (75)
T ss_dssp             SSCCEETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred             CCCCCCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence            45678999999999999889999 999999999999999999999999988654

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.79  E-value=8.5e-20  Score=105.76  Aligned_cols=58  Identities=33%  Similarity=0.752  Sum_probs=50.6

Q ss_pred             CCCCcccccccccccccCCCccccCCCCccccHHHHHHHHhCCCccccccccccccccc
Q 037529           67 ELVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSHFFN  125 (133)
Q Consensus        67 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~~~~  125 (133)
                      +...+.+|+||++++..++.+..++ |||.||.+||.+|++.+.+||+||+.+......
T Consensus        11 ~~~~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~~   68 (74)
T 2ep4_A           11 ELNLHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQL   68 (74)
T ss_dssp             CCCCSCBCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHHHCSBCTTTCCBCSSCCSC
T ss_pred             cCCCCCCCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHHcCCcCCCcCccccccccc
Confidence            3345688999999999999888999 999999999999999999999999998764443

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=99.79  E-value=1.1e-19  Score=103.93  Aligned_cols=57  Identities=33%  Similarity=0.832  Sum_probs=50.1

Q ss_pred             CCCCcccccccccccccCCCccccCCCCccccHHHHHHHHhCCCcccccccccccccc
Q 037529           67 ELVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSHFF  124 (133)
Q Consensus        67 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~~~  124 (133)
                      +...+.+|+||++.|..++.++.++ |||.||.+||..|+..+.+||+||+.+.....
T Consensus        10 ~~~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~   66 (69)
T 2kiz_A           10 EEDTEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQLP   66 (69)
T ss_dssp             STTCCCSBTTTTBCCCSSSCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCSBSCSCCC
T ss_pred             cCCCCCCCeeCCccccCCCcEEEeC-CCCHHHHHHHHHHHHcCCCCcCcCccccCcCC
Confidence            3345678999999999888888999 99999999999999999999999998876543

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=99.79  E-value=3.1e-20  Score=101.70  Aligned_cols=52  Identities=52%  Similarity=1.145  Sum_probs=46.8

Q ss_pred             CCcccccccccccccCCCccccCCCCccccHHHHHHHHhCCCcccccccccc
Q 037529           69 VMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLD  120 (133)
Q Consensus        69 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~  120 (133)
                      .++.+|+||++++.+++....++.|||.||.+|+.+|++++.+||+||+.+.
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~   54 (55)
T 1iym_A            3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence            3567899999999998888888669999999999999999999999998764

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.79  E-value=9.8e-20  Score=106.51  Aligned_cols=59  Identities=37%  Similarity=0.804  Sum_probs=51.7

Q ss_pred             CCCcccccccccccccCCCccccCCCCccccHHHHHHHHhCCCccccccccccccccccC
Q 037529           68 LVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSHFFNAL  127 (133)
Q Consensus        68 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~~~~~~  127 (133)
                      ..++.+|+||++.|..++.+..++ |||.||.+||..|+..+.+||+||+.+........
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~   70 (78)
T 2ect_A           12 VGSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTATN   70 (78)
T ss_dssp             SSSSCCCTTTTSCCCTTSCEEECT-TSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSCCC
T ss_pred             CCCCCCCeeCCccccCCCCEEEeC-CCCeecHHHHHHHHHcCCcCcCcCCccCCcccCCC
Confidence            345689999999999988888898 99999999999999999999999999977655443

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.77  E-value=2.1e-19  Score=105.89  Aligned_cols=55  Identities=29%  Similarity=0.645  Sum_probs=44.1

Q ss_pred             CCccccccccccccc-----------CCCccccCCCCccccHHHHHHHHhCCCccccccccccccc
Q 037529           69 VMGTECAVCLDEVES-----------EQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSHF  123 (133)
Q Consensus        69 ~~~~~C~ICl~~~~~-----------~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~~  123 (133)
                      .++++|+||+++|.+           ++.++.++.|||.||.+||++|+.++.+||+||+++....
T Consensus        13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~~   78 (81)
T 2ecl_A           13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQR   78 (81)
T ss_dssp             CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEEE
T ss_pred             CCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchhh
Confidence            346778888888854           3445555559999999999999999999999999886554

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=99.73  E-value=3.7e-18  Score=106.53  Aligned_cols=58  Identities=22%  Similarity=0.538  Sum_probs=45.8

Q ss_pred             CcccccccccccccCC---------------CccccCCCCccccHHHHHHHH-----hCCCccccccccccccccccCC
Q 037529           70 MGTECAVCLDEVESEQ---------------PARLVPGCNHGFHLQCADSWL-----SKHSVCPVCRAKLDSHFFNALE  128 (133)
Q Consensus        70 ~~~~C~ICl~~~~~~~---------------~~~~lp~C~H~fh~~Ci~~wl-----~~~~~CP~Cr~~v~~~~~~~~~  128 (133)
                      .+.+|+||+++|.++.               .+..++ |||.||.+||..|+     ..+.+||+||+.+.....+.+.
T Consensus        24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~g~qp~  101 (114)
T 1v87_A           24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTGTQPW  101 (114)
T ss_dssp             CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSSSCTT
T ss_pred             CCCcCccCChhhcCcccccccccccccCcccceecCC-CCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCCCCCCC
Confidence            3568999999997653               233677 99999999999999     4567999999988776555444

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=99.72  E-value=2.2e-18  Score=94.16  Aligned_cols=50  Identities=26%  Similarity=0.757  Sum_probs=43.4

Q ss_pred             CcccccccccccccCC-CccccCCCCccccHHHHHHHHhCCCcccccccccc
Q 037529           70 MGTECAVCLDEVESEQ-PARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLD  120 (133)
Q Consensus        70 ~~~~C~ICl~~~~~~~-~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~  120 (133)
                      ++.+|+||++++.+++ ....++ |||.||.+|+.+|+..+.+||+||+.+.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   54 (55)
T 2ecm_A            4 GSSGCPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKEGYRCPLCSGPSS   54 (55)
T ss_dssp             CCCSCTTTCCCCCTTTSCEEECT-TSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred             CCCcCcccChhhcCCCcCeEecC-CCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence            4578999999996544 566787 9999999999999999999999998764

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=99.71  E-value=3e-18  Score=98.31  Aligned_cols=55  Identities=25%  Similarity=0.586  Sum_probs=46.6

Q ss_pred             CCcccccccccccccC----CCccccCCCCccccHHHHHHHHhCCCcccccccccccccc
Q 037529           69 VMGTECAVCLDEVESE----QPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSHFF  124 (133)
Q Consensus        69 ~~~~~C~ICl~~~~~~----~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~~~  124 (133)
                      .++.+|+||++.+.+.    +....++ |||.||.+|+.+|+..+.+||+||+.+.....
T Consensus         8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~   66 (71)
T 3ng2_A            8 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKRY   66 (71)
T ss_dssp             TTCCBCTTTCCBHHHHHTTTCCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSC
T ss_pred             CCCCCCcccChhhhccccccCCeEeCC-CCChHhHHHHHHHHHcCCCCCCCCCccChhhe
Confidence            4568899999998763    4456777 99999999999999999999999999876544

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.71  E-value=4.9e-18  Score=96.80  Aligned_cols=53  Identities=26%  Similarity=0.578  Sum_probs=44.9

Q ss_pred             CCCcccccccccccccC----CCccccCCCCccccHHHHHHHHhCCCccccccccccc
Q 037529           68 LVMGTECAVCLDEVESE----QPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDS  121 (133)
Q Consensus        68 ~~~~~~C~ICl~~~~~~----~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~  121 (133)
                      ..++.+|+||++.+.+.    ..+..++ |||.||.+||..|+..+.+||+||+.+..
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   68 (69)
T 2ea6_A           12 PSGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINH   68 (69)
T ss_dssp             TTCCCCCTTTCCCHHHHTTTTCCEEECS-SSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred             CCCCCCCcccCccccccccccCCeEeCC-CCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence            34568899999999864    3346777 99999999999999999999999998764

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.69  E-value=9.6e-18  Score=96.34  Aligned_cols=56  Identities=25%  Similarity=0.575  Sum_probs=47.3

Q ss_pred             CCcccccccccccccCCCccccCCCCccccHHHHHHHHhCCCccccccccccccccccCC
Q 037529           69 VMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSHFFNALE  128 (133)
Q Consensus        69 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~~~~~~~  128 (133)
                      .++.+|+||++.+.+   ...++ |||.||.+||..|+..+..||+||+.+.......+.
T Consensus        13 ~~~~~C~IC~~~~~~---~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~p~   68 (71)
T 2d8t_A           13 LTVPECAICLQTCVH---PVSLP-CKHVFCYLCVKGASWLGKRCALCRQEIPEDFLDSGP   68 (71)
T ss_dssp             SSCCBCSSSSSBCSS---EEEET-TTEEEEHHHHHHCTTCSSBCSSSCCBCCHHHHSCSC
T ss_pred             CCCCCCccCCcccCC---CEEcc-CCCHHHHHHHHHHHHCCCcCcCcCchhCHhhccCCC
Confidence            456789999999876   45678 999999999999999999999999999876555443

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=99.69  E-value=5.7e-18  Score=95.17  Aligned_cols=54  Identities=26%  Similarity=0.605  Sum_probs=45.7

Q ss_pred             CcccccccccccccC----CCccccCCCCccccHHHHHHHHhCCCcccccccccccccc
Q 037529           70 MGTECAVCLDEVESE----QPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSHFF  124 (133)
Q Consensus        70 ~~~~C~ICl~~~~~~----~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~~~  124 (133)
                      ++.+|+||++.+.++    +....++ |||.||.+|+.+|+.++.+||+||+.+.....
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~   59 (64)
T 2xeu_A            2 AMVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKRY   59 (64)
T ss_dssp             CCCBCTTTCCBHHHHHHTTCCEEEET-TSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCE
T ss_pred             CCCCCCccChhhhCccccCCCEEeCC-CCCchhHHHHHHHHHcCCCCCCCCccCCccce
Confidence            357899999999763    4456777 99999999999999999999999999876543

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=99.69  E-value=1.6e-17  Score=102.27  Aligned_cols=52  Identities=27%  Similarity=0.710  Sum_probs=43.8

Q ss_pred             CCcccccccccccccCC---------------CccccCCCCccccHHHHHHHHhCCCccccccccccc
Q 037529           69 VMGTECAVCLDEVESEQ---------------PARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDS  121 (133)
Q Consensus        69 ~~~~~C~ICl~~~~~~~---------------~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~  121 (133)
                      .+++.|+||++.|.+.-               .++.++ |||.||..||.+||..+.+||+||+.+..
T Consensus        35 ~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~  101 (106)
T 3dpl_R           35 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWEF  101 (106)
T ss_dssp             SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCSBCCE
T ss_pred             CCCCCCccCChhHhCcCchhhccccccCCccceEeecc-cCcEECHHHHHHHHHcCCcCcCCCCccee
Confidence            35688999999998641               355677 99999999999999999999999998643

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.68  E-value=1.8e-17  Score=94.90  Aligned_cols=51  Identities=31%  Similarity=0.870  Sum_probs=44.5

Q ss_pred             CCcccccccccccccCCCccccCCCCccccHHHHHHHHhCCCcccccccccccccc
Q 037529           69 VMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSHFF  124 (133)
Q Consensus        69 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~~~  124 (133)
                      .++..|+||++.+.+    ..++ |||.||.+|+..|+..+.+||+||+.+.....
T Consensus        13 ~~~~~C~IC~~~~~~----~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~   63 (70)
T 2ecn_A           13 TDEEECCICMDGRAD----LILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGANE   63 (70)
T ss_dssp             CCCCCCSSSCCSCCS----EEET-TTEEECHHHHHHSSCCCSSCHHHHHCTTCCCC
T ss_pred             CCCCCCeeCCcCccC----cccC-CCCcccHHHHHHHHHCcCcCCCcCCcccCCCc
Confidence            456889999999876    6788 99999999999999999999999999876543

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.67  E-value=6.9e-17  Score=92.95  Aligned_cols=57  Identities=19%  Similarity=0.376  Sum_probs=46.2

Q ss_pred             CCCCcccccccccccccCCCccccCCCCccccHHHHHHHHhCCCcccccccccccccccc
Q 037529           67 ELVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSHFFNA  126 (133)
Q Consensus        67 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~~~~~  126 (133)
                      +..+...|+||++.+.+  .+..++ |||.||.+||..|+..+..||+||+.+.......
T Consensus        11 ~~~~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~   67 (72)
T 2djb_A           11 ELTPYILCSICKGYLID--ATTITE-CLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLS   67 (72)
T ss_dssp             CCCGGGSCTTTSSCCSS--CEECSS-SCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSCC
T ss_pred             hcCCCCCCCCCChHHHC--cCEECC-CCCHHHHHHHHHHHHcCCcCCCcCcccCcccccc
Confidence            34556889999999876  233347 9999999999999999999999999987655443

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.67  E-value=3.4e-17  Score=95.96  Aligned_cols=56  Identities=23%  Similarity=0.597  Sum_probs=45.9

Q ss_pred             CCcccccccccccccCCCccccCCCC-----ccccHHHHHHHHhCC--Ccccccccccccccccc
Q 037529           69 VMGTECAVCLDEVESEQPARLVPGCN-----HGFHLQCADSWLSKH--SVCPVCRAKLDSHFFNA  126 (133)
Q Consensus        69 ~~~~~C~ICl~~~~~~~~~~~lp~C~-----H~fh~~Ci~~wl~~~--~~CP~Cr~~v~~~~~~~  126 (133)
                      .++..|.||++++.+++.+ ++| |+     |.||.+||++|+..+  .+||+||+.+.......
T Consensus        13 ~~~~~C~IC~~~~~~~~~l-~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~~~   75 (80)
T 2d8s_A           13 SSQDICRICHCEGDDESPL-ITP-CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKLS   75 (80)
T ss_dssp             TTSCCCSSSCCCCCSSSCE-ECS-SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCCSC
T ss_pred             CCCCCCeEcCccccCCCee-Eec-cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCcccC
Confidence            4567899999999877766 688 96     999999999999865  59999999886554333

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.66  E-value=8.5e-17  Score=95.81  Aligned_cols=56  Identities=27%  Similarity=0.571  Sum_probs=46.9

Q ss_pred             CCCCcccccccccccccCCC-ccccCCCCccccHHHHHHHHhCC---Cccccccccccccc
Q 037529           67 ELVMGTECAVCLDEVESEQP-ARLVPGCNHGFHLQCADSWLSKH---SVCPVCRAKLDSHF  123 (133)
Q Consensus        67 ~~~~~~~C~ICl~~~~~~~~-~~~lp~C~H~fh~~Ci~~wl~~~---~~CP~Cr~~v~~~~  123 (133)
                      ...+..+|+||++.|.+++. ...++ |||.||.+|+..|+..+   ..||+||+.+....
T Consensus        11 ~~~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~   70 (88)
T 2ct2_A           11 ALREVLECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCSKITRITS   70 (88)
T ss_dssp             CCCSCCBCTTTCCBCCTTSSCEEECS-SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSS
T ss_pred             hccCCCCCccCCccccccCCCeEECC-CCChhhHHHHHHHHHcCCCCcCCCCCCCcccchh
Confidence            44556889999999998764 66777 99999999999999875   79999999876543

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=99.65  E-value=4.2e-17  Score=92.78  Aligned_cols=50  Identities=26%  Similarity=0.872  Sum_probs=43.1

Q ss_pred             CcccccccccccccCCCccccCCCCccccHHHHHHHHhCCCcccccccccccc
Q 037529           70 MGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSH  122 (133)
Q Consensus        70 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~  122 (133)
                      .+.+|+||++.+.+  ....++ |||.||.+|+..|+..+.+||+||+.+...
T Consensus         4 ~~~~C~IC~~~~~~--~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~   53 (68)
T 1chc_A            4 VAERCPICLEDPSN--YSMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVESV   53 (68)
T ss_dssp             CCCCCSSCCSCCCS--CEEETT-TTEEESTTHHHHHHHHSCSTTTTCCCCCCE
T ss_pred             CCCCCeeCCccccC--CcEecC-CCCeeHHHHHHHHHhCcCcCcCCChhhHhh
Confidence            45789999999864  346778 999999999999999999999999998754

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=99.62  E-value=3.2e-17  Score=102.36  Aligned_cols=52  Identities=27%  Similarity=0.737  Sum_probs=1.6

Q ss_pred             CCcccccccccccccC-------------C--CccccCCCCccccHHHHHHHHhCCCccccccccccc
Q 037529           69 VMGTECAVCLDEVESE-------------Q--PARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDS  121 (133)
Q Consensus        69 ~~~~~C~ICl~~~~~~-------------~--~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~  121 (133)
                      ..++.|+||+++|.+.             +  .+..++ |+|.||.+||.+|+..+.+||+||+++..
T Consensus        46 ~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~-C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~  112 (117)
T 4a0k_B           46 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWEF  112 (117)
T ss_dssp             CCC-----------------------------------------------------------------
T ss_pred             CCCCcCeECChhhcCcChhhhcccccccccccccccCC-cCceEcHHHHHHHHHcCCcCCCCCCeeee
Confidence            3568999999999752             2  233356 99999999999999999999999998654

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.61  E-value=8.3e-16  Score=86.92  Aligned_cols=50  Identities=22%  Similarity=0.452  Sum_probs=41.8

Q ss_pred             CCcccccccccccccCCCccccCCCCccccHHHHHHHHh-CCCcccccccccccc
Q 037529           69 VMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLS-KHSVCPVCRAKLDSH  122 (133)
Q Consensus        69 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~-~~~~CP~Cr~~v~~~  122 (133)
                      .+...|+||++.+.++.   .++ |||.||.+|+..|+. .+..||+||+.+...
T Consensus        13 ~~~~~C~IC~~~~~~p~---~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~   63 (66)
T 2ecy_A           13 EDKYKCEKCHLVLCSPK---QTE-CGHRFCESCMAALLSSSSPKCTACQESIVKD   63 (66)
T ss_dssp             CCCEECTTTCCEESSCC---CCS-SSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred             CcCCCCCCCChHhcCee---ECC-CCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence            45688999999988643   367 999999999999995 567899999988764

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.60  E-value=6.4e-16  Score=90.79  Aligned_cols=48  Identities=19%  Similarity=0.475  Sum_probs=42.1

Q ss_pred             CCcccccccccccccCCCccccCCCCccccHHHHHHHHhCCCcccccccccc
Q 037529           69 VMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLD  120 (133)
Q Consensus        69 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~  120 (133)
                      .....|+||++.+.+   ..+++ |||.||..|+..|+.....||+||+.+.
T Consensus        13 ~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~   60 (81)
T 2csy_A           13 EIPFRCFICRQAFQN---PVVTK-CRHYFCESCALEHFRATPRCYICDQPTG   60 (81)
T ss_dssp             CCCSBCSSSCSBCCS---EEECT-TSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred             CCCCCCcCCCchhcC---eeEcc-CCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence            446789999999976   34677 9999999999999999999999999885

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.60  E-value=9.3e-16  Score=88.26  Aligned_cols=51  Identities=25%  Similarity=0.652  Sum_probs=42.3

Q ss_pred             CCCcccccccccccccCCCccccCCCCccccHHHHHHHHh---CCCcccccccccccc
Q 037529           68 LVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLS---KHSVCPVCRAKLDSH  122 (133)
Q Consensus        68 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~---~~~~CP~Cr~~v~~~  122 (133)
                      ..++..|+||++.+.+   ...++ |||.||.+|+..|+.   .+..||+||+.+...
T Consensus        17 ~~~~~~C~IC~~~~~~---~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~   70 (73)
T 2ysl_A           17 LQEEVICPICLDILQK---PVTID-CGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN   70 (73)
T ss_dssp             CCCCCBCTTTCSBCSS---EEECT-TCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred             CccCCEeccCCcccCC---eEEcC-CCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence            3456889999999885   44567 999999999999997   355899999988654

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=99.60  E-value=2.9e-16  Score=101.09  Aligned_cols=48  Identities=27%  Similarity=0.794  Sum_probs=42.4

Q ss_pred             cccccccccccccCCCccccCCCCccccHHHHHHHHhCCCcccccccccccc
Q 037529           71 GTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSH  122 (133)
Q Consensus        71 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~  122 (133)
                      +..|+||++.|.+   ...+| |||.||..||..|+..+.+||+||+.+...
T Consensus        53 ~~~C~iC~~~~~~---~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~  100 (138)
T 4ayc_A           53 ELQCIICSEYFIE---AVTLN-CAHSFCSYCINEWMKRKIECPICRKDIKSK  100 (138)
T ss_dssp             HSBCTTTCSBCSS---EEEET-TSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred             cCCCcccCcccCC---ceECC-CCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence            4679999999876   45778 999999999999999999999999988654

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.58  E-value=6.2e-16  Score=98.44  Aligned_cols=55  Identities=25%  Similarity=0.586  Sum_probs=46.8

Q ss_pred             CCcccccccccccccC----CCccccCCCCccccHHHHHHHHhCCCcccccccccccccc
Q 037529           69 VMGTECAVCLDEVESE----QPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSHFF  124 (133)
Q Consensus        69 ~~~~~C~ICl~~~~~~----~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~~~  124 (133)
                      .++.+|+||++.|.++    +....++ |||.||.+||.+|++.+.+||+||+.+.....
T Consensus         5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l   63 (133)
T 4ap4_A            5 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKRY   63 (133)
T ss_dssp             CCSCBCTTTCCBHHHHHHTTCCEEEET-TCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCE
T ss_pred             CCCCCCcccChhhhCccccccCeEecC-CCChhhHHHHHHHHHhCCCCCCCCCcCccccc
Confidence            3467899999999764    4457788 99999999999999999999999999876544

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=99.58  E-value=1.2e-15  Score=88.14  Aligned_cols=52  Identities=21%  Similarity=0.520  Sum_probs=41.8

Q ss_pred             CCCCcccccccccccccCCCccccCCCCccccHHHHHHHHhCC--Cccccccccccc
Q 037529           67 ELVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKH--SVCPVCRAKLDS  121 (133)
Q Consensus        67 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~--~~CP~Cr~~v~~  121 (133)
                      ...++..|+||++.|.++   ..++.|||.||..||..|+..+  ..||+||+.+..
T Consensus        11 ~~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~   64 (74)
T 2yur_A           11 PIPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS   64 (74)
T ss_dssp             CSCGGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred             cCCCCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence            345568899999999863   3455599999999999999865  689999997543

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.56  E-value=5e-15  Score=85.15  Aligned_cols=53  Identities=19%  Similarity=0.494  Sum_probs=44.0

Q ss_pred             CcccccccccccccCCCccccCCCCccccHHHHHHHHhCC--Cccccccccccccccc
Q 037529           70 MGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKH--SVCPVCRAKLDSHFFN  125 (133)
Q Consensus        70 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~--~~CP~Cr~~v~~~~~~  125 (133)
                      ...+|+||.+.+..++...  . |+|.||..||.+||+++  .+||+||+........
T Consensus        14 ~i~~C~IC~~~i~~g~~C~--~-C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~~~   68 (74)
T 2ct0_A           14 AVKICNICHSLLIQGQSCE--T-CGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIPK   68 (74)
T ss_dssp             SSCBCSSSCCBCSSSEECS--S-SCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCCCC
T ss_pred             CCCcCcchhhHcccCCccC--C-CCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCCCC
Confidence            4578999999998776554  4 99999999999999987  7999999887644433

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=99.56  E-value=1.1e-15  Score=89.18  Aligned_cols=53  Identities=21%  Similarity=0.505  Sum_probs=43.7

Q ss_pred             CCCCcccccccccccccCCCccccCCCCccccHHHHHHHHhC-------CCccccccccccccc
Q 037529           67 ELVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSK-------HSVCPVCRAKLDSHF  123 (133)
Q Consensus        67 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~-------~~~CP~Cr~~v~~~~  123 (133)
                      ...++.+|+||++.+.+.   ..++ |||.||.+|+..|+..       ...||+||+.+....
T Consensus         8 ~~~~~~~C~IC~~~~~~p---~~l~-CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~   67 (79)
T 2egp_A            8 NVQEEVTCPICLELLTEP---LSLD-CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEH   67 (79)
T ss_dssp             CCCCCCEETTTTEECSSC---CCCS-SSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSG
T ss_pred             hcccCCCCcCCCcccCCe---eECC-CCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhh
Confidence            345568899999998763   4577 9999999999999986       568999999987643

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.55  E-value=4.9e-15  Score=87.40  Aligned_cols=52  Identities=25%  Similarity=0.551  Sum_probs=43.5

Q ss_pred             CCCcccccccccccccCCCccccCCCCccccHHHHHHHHhC------CCccccccccccccc
Q 037529           68 LVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSK------HSVCPVCRAKLDSHF  123 (133)
Q Consensus        68 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~------~~~CP~Cr~~v~~~~  123 (133)
                      ..++..|+||++.+.++   ..++ |||.||.+|+..|+..      ...||+||+.+....
T Consensus        16 ~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~   73 (85)
T 2ecw_A           16 IKEEVTCPICLELLKEP---VSAD-CNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGN   73 (85)
T ss_dssp             CCTTTSCTTTCSCCSSC---EECT-TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTC
T ss_pred             CccCCCCcCCChhhCcc---eeCC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHh
Confidence            34568899999998763   3677 9999999999999987      668999999987643

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=99.55  E-value=4e-15  Score=86.68  Aligned_cols=50  Identities=18%  Similarity=0.426  Sum_probs=42.9

Q ss_pred             CCcccccccccccccCCCccccCCCCccccHHHHHHHHhC-CCcccccccccccc
Q 037529           69 VMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSK-HSVCPVCRAKLDSH  122 (133)
Q Consensus        69 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~v~~~  122 (133)
                      .++..|+||++.|.+   ...++ |||.||..||..|+.. +.+||+||+.+...
T Consensus         6 ~~~~~C~IC~~~~~~---Pv~~~-CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~   56 (78)
T 1t1h_A            6 PEYFRCPISLELMKD---PVIVS-TGQTYERSSIQKWLDAGHKTCPKSQETLLHA   56 (78)
T ss_dssp             SSSSSCTTTSCCCSS---EEEET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred             cccCCCCCccccccC---CEEcC-CCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence            456889999999876   34567 9999999999999987 77999999988654

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=99.55  E-value=1.8e-15  Score=92.35  Aligned_cols=51  Identities=29%  Similarity=0.716  Sum_probs=42.7

Q ss_pred             CCcccccccccccccCCCccc-cCCCCccccHHHHHHHHhCC-Cccccccccccccc
Q 037529           69 VMGTECAVCLDEVESEQPARL-VPGCNHGFHLQCADSWLSKH-SVCPVCRAKLDSHF  123 (133)
Q Consensus        69 ~~~~~C~ICl~~~~~~~~~~~-lp~C~H~fh~~Ci~~wl~~~-~~CP~Cr~~v~~~~  123 (133)
                      .++..|+||++.+.+   .+. ++ |||.||..||..|+..+ ..||+||+.+....
T Consensus        20 ~~~~~C~IC~~~~~~---p~~~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~   72 (100)
T 3lrq_A           20 AEVFRCFICMEKLRD---ARLCPH-CSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRE   72 (100)
T ss_dssp             HHHTBCTTTCSBCSS---EEECTT-TCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred             CCCCCCccCCccccC---ccccCC-CCChhhHHHHHHHHHHCcCCCCCCCCcCCHHH
Confidence            346789999999875   334 77 99999999999999987 69999999986543

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.54  E-value=4.5e-15  Score=83.59  Aligned_cols=55  Identities=20%  Similarity=0.455  Sum_probs=43.3

Q ss_pred             Cccccccccc-ccccCCCc-cccCCCCccccHHHHHHHHhC-CCccccccccccccccc
Q 037529           70 MGTECAVCLD-EVESEQPA-RLVPGCNHGFHLQCADSWLSK-HSVCPVCRAKLDSHFFN  125 (133)
Q Consensus        70 ~~~~C~ICl~-~~~~~~~~-~~lp~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~v~~~~~~  125 (133)
                      ++..|+||++ .+.++... ..++ |||.||.+|+..|+.+ +..||+||+.+......
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~   59 (65)
T 1g25_A            2 DDQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFR   59 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECT-TCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCE
T ss_pred             CCCcCCcCCCCccCCCccCeecCC-CCCHhHHHHHHHHHHcCCCcCCCCCCccccccce
Confidence            3578999999 77765543 3467 9999999999999765 46899999998765543

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.54  E-value=4.9e-15  Score=87.40  Aligned_cols=53  Identities=26%  Similarity=0.611  Sum_probs=43.9

Q ss_pred             CCCCcccccccccccccCCCccccCCCCccccHHHHHHHHhC------CCccccccccccccc
Q 037529           67 ELVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSK------HSVCPVCRAKLDSHF  123 (133)
Q Consensus        67 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~------~~~CP~Cr~~v~~~~  123 (133)
                      ...+..+|+||++.+.+   ...++ |||.||.+|+..|+..      ...||+||+.+....
T Consensus        15 ~~~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~   73 (85)
T 2ecv_A           15 NVKEEVTCPICLELLTQ---PLSLD-CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPEN   73 (85)
T ss_dssp             CCCCCCCCTTTCSCCSS---CBCCS-SSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSS
T ss_pred             HccCCCCCCCCCcccCC---ceeCC-CCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHh
Confidence            33456889999999876   34567 9999999999999987      679999999987643

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=99.52  E-value=4.8e-15  Score=90.17  Aligned_cols=50  Identities=20%  Similarity=0.563  Sum_probs=42.1

Q ss_pred             CcccccccccccccCCCccccCCCCccccHHHHHHHHhCCCcccccccccccc
Q 037529           70 MGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSH  122 (133)
Q Consensus        70 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~  122 (133)
                      +...|+||++.+.++  +..++ |||.||..|+..|+..+..||+||+.+...
T Consensus        21 ~~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~   70 (99)
T 2y43_A           21 DLLRCGICFEYFNIA--MIIPQ-CSHNYCSLCIRKFLSYKTQCPTCCVTVTEP   70 (99)
T ss_dssp             HHTBCTTTCSBCSSE--EECTT-TCCEEEHHHHHHHHTTCCBCTTTCCBCCGG
T ss_pred             CCCCcccCChhhCCc--CEECC-CCCHhhHHHHHHHHHCCCCCCCCCCcCChh
Confidence            357899999998862  22347 999999999999999999999999988753

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.52  E-value=1.4e-14  Score=81.10  Aligned_cols=44  Identities=30%  Similarity=0.708  Sum_probs=36.9

Q ss_pred             CCCcccccccccccccCCCccccCCCCccccHHHHHHHHh---CCCccccc
Q 037529           68 LVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLS---KHSVCPVC  115 (133)
Q Consensus        68 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~---~~~~CP~C  115 (133)
                      ..++..|+||++.+.+   ...++ |||.||..||..|++   .+..||+|
T Consensus        17 ~~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           17 LQEEVICPICLDILQK---PVTID-CGHNFCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCCCBCTTTCSBCSS---CEECT-TSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred             CccCCCCCcCCchhCC---eEEeC-CCCcchHHHHHHHHHcCCCCCcCcCC
Confidence            3456889999999886   44567 999999999999998   45689998

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=99.51  E-value=4.1e-15  Score=91.85  Aligned_cols=51  Identities=20%  Similarity=0.542  Sum_probs=43.0

Q ss_pred             CCcccccccccccccCCCccccCCCCccccHHHHHHHHhCCCcccccccccccc
Q 037529           69 VMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSH  122 (133)
Q Consensus        69 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~  122 (133)
                      .++..|+||++.+.+  .+..++ |||.||..||..|+..+..||+||+.+...
T Consensus        13 ~~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~   63 (108)
T 2ckl_A           13 NPHLMCVLCGGYFID--ATTIIE-CLHSFCKTCIVRYLETSKYCPICDVQVHKT   63 (108)
T ss_dssp             GGGTBCTTTSSBCSS--EEEETT-TCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred             CCcCCCccCChHHhC--cCEeCC-CCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence            456889999999875  233347 999999999999999999999999988754

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.51  E-value=5.8e-15  Score=93.87  Aligned_cols=55  Identities=25%  Similarity=0.586  Sum_probs=46.1

Q ss_pred             CCcccccccccccccC----CCccccCCCCccccHHHHHHHHhCCCcccccccccccccc
Q 037529           69 VMGTECAVCLDEVESE----QPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSHFF  124 (133)
Q Consensus        69 ~~~~~C~ICl~~~~~~----~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~~~  124 (133)
                      .+...|+||++.+.+.    .....++ |||.||..||++|++.+.+||+||+++.....
T Consensus        70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~  128 (133)
T 4ap4_A           70 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKRY  128 (133)
T ss_dssp             SSSCBCTTTCCBHHHHHHTTCCEEEET-TSBEEEHHHHHHHHHHCSBCTTTCCBCCGGGE
T ss_pred             CCCCCCCCCCCccccccccCcceEeCC-CCChhhHHHHHHHHHcCCCCCCCCCcCChhcc
Confidence            3467899999998763    3346777 99999999999999999999999999876543

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.50  E-value=1.8e-14  Score=79.15  Aligned_cols=44  Identities=32%  Similarity=0.909  Sum_probs=36.4

Q ss_pred             CCCcccccccccccccCCCccccCCCCccccHHHHHHHHh---CCCccccc
Q 037529           68 LVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLS---KHSVCPVC  115 (133)
Q Consensus        68 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~---~~~~CP~C  115 (133)
                      ..++..|+||++.+.++   ..++ |||.||.+||..|+.   .+..||+|
T Consensus        12 ~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A           12 LQVEASCSVCLEYLKEP---VIIE-CGHNFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             SCCCCBCSSSCCBCSSC---CCCS-SCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             cccCCCCccCCcccCcc---EeCC-CCCccCHHHHHHHHHhcCCCCCCCCC
Confidence            34568899999999874   4577 999999999999954   46789998

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=99.50  E-value=4.9e-14  Score=82.13  Aligned_cols=56  Identities=18%  Similarity=0.378  Sum_probs=43.4

Q ss_pred             CCCcccccccccccccCCC-ccccCCCCccccHHHHHHHHhC-CCcccccccccccccc
Q 037529           68 LVMGTECAVCLDEVESEQP-ARLVPGCNHGFHLQCADSWLSK-HSVCPVCRAKLDSHFF  124 (133)
Q Consensus        68 ~~~~~~C~ICl~~~~~~~~-~~~lp~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~v~~~~~  124 (133)
                      ..++.+|+||++.+..++. +..++ |||.||..|+..++.. +..||.||+.+.....
T Consensus         8 ~~~~~~CpICle~~~~~d~~~~p~~-CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~   65 (78)
T 1e4u_A            8 KEDPVECPLCMEPLEIDDINFFPCT-CGYQICRFCWHRIRTDENGLCPACRKPYPEDPA   65 (78)
T ss_dssp             CCCCCBCTTTCCBCCTTTTTCCSST-TSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred             cccCCcCCccCccCccccccccccC-CCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence            4556889999999875442 33356 9999999999999854 5689999999876543

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=99.48  E-value=1.4e-14  Score=91.46  Aligned_cols=48  Identities=25%  Similarity=0.535  Sum_probs=41.1

Q ss_pred             CcccccccccccccCCCccccCCCCccccHHHHHHHHhCCC-ccccccccccc
Q 037529           70 MGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHS-VCPVCRAKLDS  121 (133)
Q Consensus        70 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~-~CP~Cr~~v~~  121 (133)
                      ++..|+||++.+.+   ...++ |||.||..||..|+..+. .||+||+.+..
T Consensus        51 ~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   99 (124)
T 3fl2_A           51 ETFQCICCQELVFR---PITTV-CQHNVCKDCLDRSFRAQVFSCPACRYDLGR   99 (124)
T ss_dssp             HHTBCTTTSSBCSS---EEECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred             cCCCCCcCChHHcC---cEEee-CCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence            45789999999986   44567 999999999999998654 99999999866

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=99.47  E-value=6e-14  Score=92.69  Aligned_cols=70  Identities=31%  Similarity=0.532  Sum_probs=50.2

Q ss_pred             CCCCCHHHHhhCCCcccCC----------CCCcccccccccccccCCCccccCCCCccccHHHHHHHHhC-CCccccccc
Q 037529           49 EGGLSASELDKLPKISGKE----------LVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSK-HSVCPVCRA  117 (133)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~----------~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~-~~~CP~Cr~  117 (133)
                      ..+++...+.+.+......          ..+...|+||++.+.+  .+..++ |||.||..||..|+.. +..||+||.
T Consensus        22 ~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~   98 (165)
T 2ckl_B           22 TWELSLYELQRTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKN--TMTTKE-CLHRFCADCIITALRSGNKECPTCRK   98 (165)
T ss_dssp             CCCCCHHHHHCCCCCCCCSCCEEC----CCHHHHBCTTTSSBCSS--EEEETT-TCCEEEHHHHHHHHHTTCCBCTTTCC
T ss_pred             cccCCHHHHhcCchhhhccccccccchhhCCCCCCCcccChHhhC--cCEeCC-CCChhHHHHHHHHHHhCcCCCCCCCC
Confidence            3455666666554432111          1234689999999886  233347 9999999999999997 779999999


Q ss_pred             cccc
Q 037529          118 KLDS  121 (133)
Q Consensus       118 ~v~~  121 (133)
                      .+..
T Consensus        99 ~~~~  102 (165)
T 2ckl_B           99 KLVS  102 (165)
T ss_dssp             BCCS
T ss_pred             cCCC
Confidence            8854

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=99.47  E-value=2.3e-14  Score=89.87  Aligned_cols=52  Identities=27%  Similarity=0.504  Sum_probs=43.7

Q ss_pred             CCCCcccccccccccccCCCccccCCCCccccHHHHHHHHhCCC-cccccccccccc
Q 037529           67 ELVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHS-VCPVCRAKLDSH  122 (133)
Q Consensus        67 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~-~CP~Cr~~v~~~  122 (133)
                      ...++..|+||++.+.++   ..++ |||.||..||..|+..+. +||+||+.+...
T Consensus        14 ~~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~   66 (118)
T 3hct_A           14 PLESKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLEN   66 (118)
T ss_dssp             CCCGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred             CCCCCCCCCcCChhhcCe---EECC-cCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence            445568999999998863   4577 999999999999998765 999999988764

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=99.45  E-value=5.2e-14  Score=84.40  Aligned_cols=50  Identities=20%  Similarity=0.529  Sum_probs=40.5

Q ss_pred             CCCcccccccccccccCCCccccCCCCccccHHHHHHHHhCC--Ccccccccccc
Q 037529           68 LVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKH--SVCPVCRAKLD  120 (133)
Q Consensus        68 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~--~~CP~Cr~~v~  120 (133)
                      ..++..|+||++.|.++   ..++.|||.||..||..|+..+  ..||+||+.+.
T Consensus        10 ~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~   61 (92)
T 3ztg_A           10 IPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV   61 (92)
T ss_dssp             CCTTTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred             CCcCCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence            35568899999999863   3454499999999999999743  58999999873

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.44  E-value=5.1e-14  Score=87.25  Aligned_cols=51  Identities=24%  Similarity=0.602  Sum_probs=42.0

Q ss_pred             CcccccccccccccCCCccccCCCCccccHHHHHHHHhCCC---cccccccccccccc
Q 037529           70 MGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHS---VCPVCRAKLDSHFF  124 (133)
Q Consensus        70 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~---~CP~Cr~~v~~~~~  124 (133)
                      +...|+||++.+.++   ..++ |||.||..|+..|+..+.   .||+||+.+.....
T Consensus        20 ~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~   73 (112)
T 1jm7_A           20 KILECPICLELIKEP---VSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL   73 (112)
T ss_dssp             HHTSCSSSCCCCSSC---CBCT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTC
T ss_pred             CCCCCcccChhhcCe---EECC-CCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhc
Confidence            356899999998763   3467 999999999999998754   89999998876443

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=99.43  E-value=4.4e-14  Score=79.35  Aligned_cols=48  Identities=23%  Similarity=0.540  Sum_probs=40.8

Q ss_pred             CcccccccccccccCCCcccc--CCCCcc-ccHHHHHHHHhCCCccccccccccc
Q 037529           70 MGTECAVCLDEVESEQPARLV--PGCNHG-FHLQCADSWLSKHSVCPVCRAKLDS  121 (133)
Q Consensus        70 ~~~~C~ICl~~~~~~~~~~~l--p~C~H~-fh~~Ci~~wl~~~~~CP~Cr~~v~~  121 (133)
                      ++.+|+||++...+   ...+  | |||. |+.+|+..|...+..||+||+.+..
T Consensus         7 ~~~~C~IC~~~~~~---~~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~~   57 (64)
T 2vje_A            7 AIEPCVICQGRPKN---GCIVHGK-TGHLMACFTCAKKLKKRNKPCPVCRQPIQM   57 (64)
T ss_dssp             GGSCCTTTSSSCSC---EEEEETT-EEEEEECHHHHHHHHHTTCCCTTTCCCCCE
T ss_pred             CcCCCCcCCCCCCC---EEEECCC-CCChhhHHHHHHHHHHcCCcCCCcCcchhc
Confidence            45789999998665   3344  8 9999 8999999999988999999998864

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=99.43  E-value=3.3e-14  Score=88.80  Aligned_cols=51  Identities=24%  Similarity=0.418  Sum_probs=42.9

Q ss_pred             CcccccccccccccCCCccccCCCCccccHHHHHHHHhC-CCcccccccccccccc
Q 037529           70 MGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSK-HSVCPVCRAKLDSHFF  124 (133)
Q Consensus        70 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~v~~~~~  124 (133)
                      ++..|+||++.+.+   ...++ |||.||..||..|+.. +.+||+||+.+.....
T Consensus        22 ~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~   73 (116)
T 1rmd_A           22 KSISCQICEHILAD---PVETS-CKHLFCRICILRCLKVMGSYCPSCRYPCFPTDL   73 (116)
T ss_dssp             HHTBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGC
T ss_pred             CCCCCCCCCcHhcC---cEEcC-CCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhc
Confidence            35789999999876   34477 9999999999999987 7799999999876543

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=99.41  E-value=9.8e-14  Score=90.41  Aligned_cols=49  Identities=22%  Similarity=0.515  Sum_probs=41.8

Q ss_pred             CcccccccccccccCCCccccCCCCccccHHHHHHHHhCCC-cccccccccccc
Q 037529           70 MGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHS-VCPVCRAKLDSH  122 (133)
Q Consensus        70 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~-~CP~Cr~~v~~~  122 (133)
                      +...|+||++.+.+   ...++ |||.||..||..|+..+. .||+||..+...
T Consensus        77 ~~~~C~IC~~~~~~---pv~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~  126 (150)
T 1z6u_A           77 QSFMCVCCQELVYQ---PVTTE-CFHNVCKDCLQRSFKAQVFSCPACRHDLGQN  126 (150)
T ss_dssp             HHTBCTTTSSBCSS---EEECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred             cCCEeecCChhhcC---CEEcC-CCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence            34689999999876   34578 999999999999999765 899999998765

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=99.40  E-value=1e-13  Score=77.56  Aligned_cols=51  Identities=16%  Similarity=0.384  Sum_probs=41.0

Q ss_pred             CCcccccccccccccCCCccccCCCCcc-ccHHHHHHHHhCCCccccccccccc
Q 037529           69 VMGTECAVCLDEVESEQPARLVPGCNHG-FHLQCADSWLSKHSVCPVCRAKLDS  121 (133)
Q Consensus        69 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~-fh~~Ci~~wl~~~~~CP~Cr~~v~~  121 (133)
                      ..+.+|+||++...+.. +..+| |||. |+.+|+..|...+..||+||+.+..
T Consensus         5 ~~~~~C~IC~~~~~~~~-~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~~   56 (63)
T 2vje_B            5 NLLKPCSLCEKRPRDGN-IIHGR-TGHLVTCFHCARRLKKAGASCPICKKEIQL   56 (63)
T ss_dssp             GGGSBCTTTSSSBSCEE-EEETT-EEEEEECHHHHHHHHHTTCBCTTTCCBCCE
T ss_pred             CcCCCCcccCCcCCCeE-EEecC-CCCHhHHHHHHHHHHHhCCcCCCcCchhhc
Confidence            34578999999865522 22348 9998 9999999999888999999998864

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=99.40  E-value=3e-14  Score=88.85  Aligned_cols=49  Identities=29%  Similarity=0.742  Sum_probs=41.4

Q ss_pred             CCcccccccccccccCCCccccCCCCccccHHHHHHHHhC-CCccccccccccc
Q 037529           69 VMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSK-HSVCPVCRAKLDS  121 (133)
Q Consensus        69 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~v~~  121 (133)
                      .++..|+||++.+.+   ...++ |||.||..||..|+.. +..||+||+.+..
T Consensus        13 ~~~~~C~iC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   62 (115)
T 3l11_A           13 LSECQCGICMEILVE---PVTLP-CNHTLCKPCFQSTVEKASLCCPFCRRRVSS   62 (115)
T ss_dssp             HHHHBCTTTCSBCSS---CEECT-TSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred             CCCCCCccCCcccCc---eeEcC-CCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence            345789999999876   44567 9999999999999976 6689999998864

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=99.36  E-value=6.1e-13  Score=78.71  Aligned_cols=50  Identities=10%  Similarity=-0.037  Sum_probs=44.1

Q ss_pred             CCcccccccccccccCCCccccCCCCccccHHHHHHHHhCCCcccccccccccc
Q 037529           69 VMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSH  122 (133)
Q Consensus        69 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~  122 (133)
                      .+...|+||++-|++   ..+++ |||.|+..||..|+..+.+||+||..+...
T Consensus        12 p~~~~CpI~~~~m~d---PV~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~   61 (85)
T 2kr4_A           12 PDEFRDPLMDTLMTD---PVRLP-SGTVMDRSIILRHLLNSPTDPFNRQMLTES   61 (85)
T ss_dssp             CTTTBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred             chheECcccCchhcC---CeECC-CCCEECHHHHHHHHhcCCCCCCCcCCCChH
Confidence            456889999999987   55778 999999999999999889999999988654

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=99.35  E-value=4.6e-13  Score=98.53  Aligned_cols=49  Identities=24%  Similarity=0.691  Sum_probs=42.7

Q ss_pred             cccccccccccccCCCccccCCCCccccHHHHHHHHh-CCCccccccccccccc
Q 037529           71 GTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLS-KHSVCPVCRAKLDSHF  123 (133)
Q Consensus        71 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~-~~~~CP~Cr~~v~~~~  123 (133)
                      ..+|+||++.+.+   ...+| |||.||..|+..|+. .+.+||+||+.+....
T Consensus       332 ~~~C~ICle~~~~---pv~lp-CGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~  381 (389)
T 2y1n_A          332 FQLCKICAENDKD---VKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE  381 (389)
T ss_dssp             SSBCTTTSSSBCC---EEEET-TCCEECHHHHHHHHHHTCSBCTTTCCBCCEEE
T ss_pred             CCCCCccCcCCCC---eEEeC-CCChhhHHHHHHHHhcCCCCCCCCCCccCCce
Confidence            4689999999865   56788 999999999999999 7889999999887643

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.35  E-value=1.7e-13  Score=74.89  Aligned_cols=47  Identities=26%  Similarity=0.592  Sum_probs=39.1

Q ss_pred             CCcccccccccccccCCCccccCCCCccccHHHHHHHHhCCCcccccccccccc
Q 037529           69 VMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSH  122 (133)
Q Consensus        69 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~  122 (133)
                      .+...|+||++.|.+   ...++ |||.||..|+..|   ...||+||+.+...
T Consensus         4 ~~~~~C~IC~~~~~~---p~~l~-CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~   50 (56)
T 1bor_A            4 FQFLRCQQCQAEAKC---PKLLP-CLHTLCSGCLEAS---GMQCPICQAPWPLG   50 (56)
T ss_dssp             CCCSSCSSSCSSCBC---CSCST-TSCCSBTTTCSSS---SSSCSSCCSSSSCC
T ss_pred             ccCCCceEeCCccCC---eEEcC-CCCcccHHHHccC---CCCCCcCCcEeecC
Confidence            456789999999986   35788 9999999999884   67899999987653

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=99.34  E-value=7.8e-13  Score=80.51  Aligned_cols=50  Identities=10%  Similarity=-0.035  Sum_probs=44.2

Q ss_pred             CCcccccccccccccCCCccccCCCCccccHHHHHHHHhCCCcccccccccccc
Q 037529           69 VMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSH  122 (133)
Q Consensus        69 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~  122 (133)
                      .+...|+||++-|.+   ..+++ |||.|+..||..|+..+.+||+||..+...
T Consensus        27 p~~~~CpI~~~~m~d---PV~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~   76 (100)
T 2kre_A           27 PDEFRDPLMDTLMTD---PVRLP-SGTIMDRSIILRHLLNSPTDPFNRQTLTES   76 (100)
T ss_dssp             STTTBCTTTCSBCSS---EEEET-TTEEEEHHHHHHHTTSCSBCSSSCCBCCTT
T ss_pred             cHhhCCcCccCcccC---CeECC-CCCEEchHHHHHHHHcCCCCCCCCCCCChh
Confidence            456889999999987   55778 999999999999999889999999988754

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=99.33  E-value=3.8e-13  Score=86.74  Aligned_cols=49  Identities=22%  Similarity=0.393  Sum_probs=41.2

Q ss_pred             CCCcccccccccccccCCCccccCCCCccccHHHHHHHHhCCC-cccccccccc
Q 037529           68 LVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHS-VCPVCRAKLD  120 (133)
Q Consensus        68 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~-~CP~Cr~~v~  120 (133)
                      ..+...|+||++.+.++   ..++ |||.||..||..|+..+. .||+||..+.
T Consensus        28 l~~~~~C~IC~~~~~~p---v~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~   77 (141)
T 3knv_A           28 LEAKYLCSACRNVLRRP---FQAQ-CGHRYCSFCLASILSSGPQNCAACVHEGI   77 (141)
T ss_dssp             CCGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred             CCcCcCCCCCChhhcCc---EECC-CCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence            34568899999999874   4567 999999999999998664 8999999763

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=99.32  E-value=1.5e-12  Score=78.92  Aligned_cols=50  Identities=10%  Similarity=0.012  Sum_probs=43.8

Q ss_pred             CCcccccccccccccCCCccccCCCC-ccccHHHHHHHHhCCCcccccccccccc
Q 037529           69 VMGTECAVCLDEVESEQPARLVPGCN-HGFHLQCADSWLSKHSVCPVCRAKLDSH  122 (133)
Q Consensus        69 ~~~~~C~ICl~~~~~~~~~~~lp~C~-H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~  122 (133)
                      .++..|+||++-|++   .++++ || |.|+..||..|+..+.+||+||..+...
T Consensus        20 p~~~~CpI~~~~m~d---PV~~~-cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~   70 (98)
T 1wgm_A           20 CDEFLDPIMSTLMCD---PVVLP-SSRVTVDRSTIARHLLSDQTDPFNRSPLTMD   70 (98)
T ss_dssp             CTTTBCTTTCSBCSS---EEECT-TTCCEEEHHHHHHHTTTSCBCTTTCSBCCTT
T ss_pred             cHhcCCcCccccccC---CeECC-CCCeEECHHHHHHHHHhCCCCCCCCCCCChh
Confidence            456889999999987   45677 99 9999999999999888999999988754

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=99.30  E-value=3.7e-13  Score=77.62  Aligned_cols=45  Identities=29%  Similarity=0.659  Sum_probs=38.8

Q ss_pred             CcccccccccccccCCCccccCCCCcc-ccHHHHHHHHhCCCcccccccccccc
Q 037529           70 MGTECAVCLDEVESEQPARLVPGCNHG-FHLQCADSWLSKHSVCPVCRAKLDSH  122 (133)
Q Consensus        70 ~~~~C~ICl~~~~~~~~~~~lp~C~H~-fh~~Ci~~wl~~~~~CP~Cr~~v~~~  122 (133)
                      ++..|+||++.+.+   ...+| |||. ||.+|+..|    ..||+||+.+...
T Consensus        23 ~~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~~   68 (74)
T 4ic3_A           23 EEKLCKICMDRNIA---IVFVP-CGHLVTCKQCAEAV----DKCPMCYTVITFK   68 (74)
T ss_dssp             HHTBCTTTSSSBCC---EEEET-TCCBCCCHHHHTTC----SBCTTTCCBCSEE
T ss_pred             cCCCCCCCCCCCCC---EEEcC-CCChhHHHHhhhcC----ccCCCcCcCccCc
Confidence            45789999998765   56778 9999 999999998    8899999988654

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.28  E-value=4.5e-13  Score=83.75  Aligned_cols=46  Identities=22%  Similarity=0.495  Sum_probs=39.2

Q ss_pred             CcccccccccccccCCCcccc-CCCCccccHHHHHHHHhCCCccccccccccc
Q 037529           70 MGTECAVCLDEVESEQPARLV-PGCNHGFHLQCADSWLSKHSVCPVCRAKLDS  121 (133)
Q Consensus        70 ~~~~C~ICl~~~~~~~~~~~l-p~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~  121 (133)
                      +...|+||++.|.+   ...+ + |||.||..||..|+.  ..||+||+.+..
T Consensus        21 ~~~~C~IC~~~~~~---pv~~~~-CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~   67 (117)
T 1jm7_B           21 KLLRCSRCTNILRE---PVCLGG-CEHIFCSNCVSDCIG--TGCPVCYTPAWI   67 (117)
T ss_dssp             HTTSCSSSCSCCSS---CBCCCS-SSCCBCTTTGGGGTT--TBCSSSCCBCSC
T ss_pred             hCCCCCCCChHhhC---ccEeCC-CCCHHHHHHHHHHhc--CCCcCCCCcCcc
Confidence            45789999999876   3455 7 999999999999987  889999998854

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=99.25  E-value=1e-12  Score=94.77  Aligned_cols=55  Identities=24%  Similarity=0.564  Sum_probs=42.6

Q ss_pred             CCcccccccccccccCCCcc-----ccCCCCccccHHHHHHHHhCC-----------Ccccccccccccccc
Q 037529           69 VMGTECAVCLDEVESEQPAR-----LVPGCNHGFHLQCADSWLSKH-----------SVCPVCRAKLDSHFF  124 (133)
Q Consensus        69 ~~~~~C~ICl~~~~~~~~~~-----~lp~C~H~fh~~Ci~~wl~~~-----------~~CP~Cr~~v~~~~~  124 (133)
                      ....+|+||++.+.++..+.     -.+ |||.||..|+.+|++..           .+||+||++++.+..
T Consensus       306 e~~~ECaICys~~l~~g~lPdk~C~n~~-C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~sf~  376 (381)
T 3k1l_B          306 NEELRCNICFAYRLDGGEVPLVSCDNAK-CVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTSFA  376 (381)
T ss_dssp             CSCCSCSSSCCSSCTTCCCCCBCCSCTT-CCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGGGG
T ss_pred             cCCccCcccceeecCCCCCccccccCCc-cCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCccHH
Confidence            45678999999998744332     234 99999999999999742           369999999876543

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=99.24  E-value=2.7e-12  Score=85.10  Aligned_cols=52  Identities=27%  Similarity=0.500  Sum_probs=43.4

Q ss_pred             CCCCcccccccccccccCCCccccCCCCccccHHHHHHHHhCC-Ccccccccccccc
Q 037529           67 ELVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKH-SVCPVCRAKLDSH  122 (133)
Q Consensus        67 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~-~~CP~Cr~~v~~~  122 (133)
                      ...+...|+||++.+.++   ..++ |||.||..|+..|+..+ .+||+||..+...
T Consensus        14 ~~~~~~~C~IC~~~~~~p---v~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~   66 (170)
T 3hcs_A           14 PLESKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLEN   66 (170)
T ss_dssp             CCCGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred             CCCCCCCCCCCChhhcCc---EECC-CCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence            345568999999998874   4577 99999999999999864 4999999988764

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.19  E-value=5.8e-12  Score=72.70  Aligned_cols=45  Identities=29%  Similarity=0.663  Sum_probs=37.3

Q ss_pred             CcccccccccccccCCCccccCCCCcc-ccHHHHHHHHhCCCcccccccccccc
Q 037529           70 MGTECAVCLDEVESEQPARLVPGCNHG-FHLQCADSWLSKHSVCPVCRAKLDSH  122 (133)
Q Consensus        70 ~~~~C~ICl~~~~~~~~~~~lp~C~H~-fh~~Ci~~wl~~~~~CP~Cr~~v~~~  122 (133)
                      ++.+|+||++.+.+   ...+| |||. ||.+|+..    ...||+||+.+...
T Consensus        24 ~~~~C~IC~~~~~~---~~~~p-CgH~~~C~~C~~~----~~~CP~Cr~~i~~~   69 (75)
T 2ecg_A           24 EEKLCKICMDRNIA---IVFVP-CGHLVTCKQCAEA----VDKCPMCYTVITFK   69 (75)
T ss_dssp             HHHSCSSSCSSCCC---BCCSS-SCCCCBCHHHHHH----CSBCTTTCCBCCCC
T ss_pred             CCCCCCcCCCCCCC---EEEec-CCCHHHHHHHhhC----CCCCccCCceecCc
Confidence            35689999999765   55688 9999 99999965    47899999988764

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.19  E-value=1.4e-11  Score=69.77  Aligned_cols=47  Identities=28%  Similarity=0.685  Sum_probs=38.8

Q ss_pred             CCcccccccccccccCCCccccCCCCcc-ccHHHHHHHHhCCCccccccccccccc
Q 037529           69 VMGTECAVCLDEVESEQPARLVPGCNHG-FHLQCADSWLSKHSVCPVCRAKLDSHF  123 (133)
Q Consensus        69 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~-fh~~Ci~~wl~~~~~CP~Cr~~v~~~~  123 (133)
                      .+...|.||++...+   +..+| |||. |+.+|+..    ...||+||+.+....
T Consensus        13 ~~~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~----~~~CP~CR~~i~~~~   60 (68)
T 2ea5_A           13 ENSKDCVVCQNGTVN---WVLLP-CRHTCLCDGCVKY----FQQCPMCRQFVQESF   60 (68)
T ss_dssp             CCSSCCSSSSSSCCC---CEETT-TTBCCSCTTHHHH----CSSCTTTCCCCCCEE
T ss_pred             CCCCCCCCcCcCCCC---EEEEC-CCChhhhHHHHhc----CCCCCCCCcchhceE
Confidence            346789999998654   77888 9999 99999984    478999999987643

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.17  E-value=9.5e-12  Score=74.87  Aligned_cols=50  Identities=16%  Similarity=0.428  Sum_probs=39.5

Q ss_pred             CCcccccccccccccCCCccccCCCCccccHHHHHHHHhCC------Ccccc--cccc-ccc
Q 037529           69 VMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKH------SVCPV--CRAK-LDS  121 (133)
Q Consensus        69 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~------~~CP~--Cr~~-v~~  121 (133)
                      .....|+||++.|.+   .++++.|||+|+..||..|+..+      .+||+  |++. +..
T Consensus         5 ~~~~~CPI~~~~~~d---PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~   63 (94)
T 2yu4_A            5 SSGFTCPITKEEMKK---PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRK   63 (94)
T ss_dssp             SSCCBCTTTCSBCSS---EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCG
T ss_pred             CcEeECcCcCchhcC---CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCH
Confidence            456789999999986   33452399999999999999753      48999  9866 543

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.17  E-value=1.1e-11  Score=74.48  Aligned_cols=51  Identities=25%  Similarity=0.574  Sum_probs=41.6

Q ss_pred             CcccccccccccccCCCccccCCCCccccHHHHHHHHhC--------CCcccc--cccc--ccc
Q 037529           70 MGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSK--------HSVCPV--CRAK--LDS  121 (133)
Q Consensus        70 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~--------~~~CP~--Cr~~--v~~  121 (133)
                      +..+|+||++++..++.+...+ |||.||.+|+..++..        ...||.  |+..  +.+
T Consensus         4 ~~~~C~IC~~~~~~~~~~~l~~-CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~   66 (94)
T 1wim_A            4 GSSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQE   66 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECH
T ss_pred             CCcCCcccCcccccccceEcCC-CCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCH
Confidence            3578999999998776666567 9999999999999863        237999  9988  654

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=99.16  E-value=2.6e-11  Score=66.99  Aligned_cols=48  Identities=21%  Similarity=0.625  Sum_probs=37.6

Q ss_pred             CCcccccccccccccCCCccccCCCC--c---cccHHHHHHHHhC--CCcccccccccc
Q 037529           69 VMGTECAVCLDEVESEQPARLVPGCN--H---GFHLQCADSWLSK--HSVCPVCRAKLD  120 (133)
Q Consensus        69 ~~~~~C~ICl~~~~~~~~~~~lp~C~--H---~fh~~Ci~~wl~~--~~~CP~Cr~~v~  120 (133)
                      .++..|.||+++.  ++.+ ++| |.  |   .||.+|+++|+..  +.+||+||..+.
T Consensus         4 ~~~~~CrIC~~~~--~~~l-~~P-C~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~   58 (60)
T 1vyx_A            4 EDVPVCWICNEEL--GNER-FRA-CGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             CSCCEETTTTEEC--SCCC-CCS-CCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCEeEEeecCC--CCce-ecC-cCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence            4567899999983  3334 577 76  4   8999999999974  578999998764

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=99.16  E-value=7.9e-12  Score=72.88  Aligned_cols=47  Identities=30%  Similarity=0.702  Sum_probs=39.1

Q ss_pred             CcccccccccccccCCCccccCCCCcc-ccHHHHHHHHhCCCcccccccccccccc
Q 037529           70 MGTECAVCLDEVESEQPARLVPGCNHG-FHLQCADSWLSKHSVCPVCRAKLDSHFF  124 (133)
Q Consensus        70 ~~~~C~ICl~~~~~~~~~~~lp~C~H~-fh~~Ci~~wl~~~~~CP~Cr~~v~~~~~  124 (133)
                      ++..|+||++.+.+   ...+| |||. |+.+|+..|    ..||+||+.+.....
T Consensus        17 ~~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~~~~   64 (79)
T 2yho_A           17 EAMLCMVCCEEEIN---STFCP-CGHTVCCESCAAQL----QSCPVCRSRVEHVQH   64 (79)
T ss_dssp             HHTBCTTTSSSBCC---EEEET-TCBCCBCHHHHTTC----SBCTTTCCBCCEEEE
T ss_pred             CCCEeEEeCcccCc---EEEEC-CCCHHHHHHHHHhc----CcCCCCCchhhCeEE
Confidence            35789999998765   67788 9999 999999987    499999999876543

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.11  E-value=3.3e-11  Score=85.15  Aligned_cols=51  Identities=12%  Similarity=0.144  Sum_probs=42.8

Q ss_pred             CCcccccccccccccCCCccccCCCCccccHHHHHHHHhC-CCccccccccccccc
Q 037529           69 VMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSK-HSVCPVCRAKLDSHF  123 (133)
Q Consensus        69 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~v~~~~  123 (133)
                      .....|+||++-|.+   .+++| |||+|+..||..|+.. +.+||+||.++....
T Consensus       206 ~~~~~c~i~~~~~~d---Pv~~~-~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~  257 (281)
T 2c2l_A          206 PDYLCGKISFELMRE---PCITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQ  257 (281)
T ss_dssp             CSTTBCTTTCSBCSS---EEECS-SCCEEETTHHHHHHHHTCSSCTTTCCCCCGGG
T ss_pred             CcccCCcCcCCHhcC---CeECC-CCCEECHHHHHHHHHHCCCCCcCCCCCCchhc
Confidence            456889999999987   45678 9999999999999986 446999999886543

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=99.05  E-value=1.1e-10  Score=77.79  Aligned_cols=53  Identities=13%  Similarity=0.166  Sum_probs=43.7

Q ss_pred             CCCCcccccccccccccCCCccccCCCCccccHHHHHHHHhCC-Cccccccccccccc
Q 037529           67 ELVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKH-SVCPVCRAKLDSHF  123 (133)
Q Consensus        67 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~-~~CP~Cr~~v~~~~  123 (133)
                      ...+...||||++-|.+   ..++| |||.|+..||..|+..+ .+||+||..+....
T Consensus       102 ~ip~~f~CPI~~elm~D---PV~~~-~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~  155 (179)
T 2f42_A          102 EIPDYLCGKISFELMRE---PCITP-SGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQ  155 (179)
T ss_dssp             CCCGGGBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred             CCcHhhcccCccccCCC---CeECC-CCCEECHHHHHHHHHhCCCCCCCCcCCCChhh
Confidence            33566889999999987   45667 99999999999999863 57999999886543

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=98.89  E-value=6.9e-10  Score=61.41  Aligned_cols=51  Identities=12%  Similarity=0.111  Sum_probs=43.4

Q ss_pred             ccccccccccccCCCcccc-CCCCccccHHHHHHHHhCCCcccccccccccccccc
Q 037529           72 TECAVCLDEVESEQPARLV-PGCNHGFHLQCADSWLSKHSVCPVCRAKLDSHFFNA  126 (133)
Q Consensus        72 ~~C~ICl~~~~~~~~~~~l-p~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~~~~~  126 (133)
                      ..|+|+++-++++   .++ + +||+|.+.||.+|+..+.+||+.+..+......+
T Consensus         4 ~~CpIs~~~m~dP---V~~~~-sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~Lip   55 (61)
T 2bay_A            4 MLCAISGKVPRRP---VLSPK-SRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVE   55 (61)
T ss_dssp             CCCTTTCSCCSSE---EEETT-TTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCEE
T ss_pred             EEecCCCCCCCCC---EEeCC-CCcEEcHHHHHHHHHhCCCCcCCcCCCChhhcEE
Confidence            5799999999863   455 6 9999999999999998888999999987765544

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=98.87  E-value=2.2e-10  Score=83.54  Aligned_cols=45  Identities=33%  Similarity=0.787  Sum_probs=38.8

Q ss_pred             CcccccccccccccCCCccccCCCCcc-ccHHHHHHHHhCCCcccccccccccc
Q 037529           70 MGTECAVCLDEVESEQPARLVPGCNHG-FHLQCADSWLSKHSVCPVCRAKLDSH  122 (133)
Q Consensus        70 ~~~~C~ICl~~~~~~~~~~~lp~C~H~-fh~~Ci~~wl~~~~~CP~Cr~~v~~~  122 (133)
                      ++..|+||++.+.+   ...+| |||. ||..|+..|    ..||+||..+...
T Consensus       294 ~~~~C~IC~~~~~~---~v~lp-CgH~~fC~~C~~~~----~~CP~CR~~i~~~  339 (345)
T 3t6p_A          294 EERTCKVCMDKEVS---VVFIP-CGHLVVCQECAPSL----RKCPICRGIIKGT  339 (345)
T ss_dssp             TTCBCTTTSSSBCC---EEEET-TCCEEECTTTGGGC----SBCTTTCCBCCEE
T ss_pred             CCCCCCccCCcCCc---eEEcC-CCChhHhHHHHhcC----CcCCCCCCCccCe
Confidence            45789999999875   66778 9999 999999988    7899999988654

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=98.84  E-value=1.3e-09  Score=76.18  Aligned_cols=52  Identities=21%  Similarity=0.411  Sum_probs=41.0

Q ss_pred             CcccccccccccccCCCccccCCCCccccHHHHHHHHhCC--Ccccc--cccccccccc
Q 037529           70 MGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKH--SVCPV--CRAKLDSHFF  124 (133)
Q Consensus        70 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~--~~CP~--Cr~~v~~~~~  124 (133)
                      ....||||++.|+++  ++.+. |||.|+..||..|+..+  ..||+  ||+.+....+
T Consensus       180 ~el~CPIcl~~f~DP--Vts~~-CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL  235 (267)
T 3htk_C          180 IELTCPITCKPYEAP--LISRK-CNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDF  235 (267)
T ss_dssp             CCSBCTTTSSBCSSE--EEESS-SCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGE
T ss_pred             eeeECcCccCcccCC--eeeCC-CCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhC
Confidence            346799999999763  33345 99999999999999864  47999  9998765443

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=98.61  E-value=2.1e-08  Score=59.87  Aligned_cols=46  Identities=28%  Similarity=0.629  Sum_probs=36.7

Q ss_pred             cccccccccccCCCccccCCCCccccHHHHHHHHhC-CCccccccccccc
Q 037529           73 ECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSK-HSVCPVCRAKLDS  121 (133)
Q Consensus        73 ~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~v~~  121 (133)
                      -|++|--.+.  ...+..| |+|+||.+|+..|.++ .++||.|+..|..
T Consensus         3 fC~~C~~Pi~--iygRmIP-CkHvFCydCa~~~~~~~~k~Cp~C~~~V~r   49 (101)
T 3vk6_A            3 FCDKCGLPIK--VYGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPVQR   49 (101)
T ss_dssp             BCTTTCSBCS--EEEEEET-TCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred             ecCccCCCeE--EEeeecc-ccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence            3677766654  3456788 9999999999999865 6899999998754

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=98.45  E-value=1.6e-07  Score=65.19  Aligned_cols=51  Identities=20%  Similarity=0.509  Sum_probs=41.0

Q ss_pred             cccccccccccccCCCccccCCCCccccHHHHHHHHhCCC--cccccccccccccc
Q 037529           71 GTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHS--VCPVCRAKLDSHFF  124 (133)
Q Consensus        71 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~--~CP~Cr~~v~~~~~  124 (133)
                      ..+|+||.+-...+....   +|+|.||..|+..|++.+.  .||.|++..+...+
T Consensus       180 i~~C~iC~~iv~~g~~C~---~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~~  232 (238)
T 3nw0_A          180 VKICNICHSLLIQGQSCE---TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIP  232 (238)
T ss_dssp             CCBCTTTCSBCSSCEECS---SSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCCC
T ss_pred             CCcCcchhhHHhCCcccC---ccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Confidence            578999999988765443   3999999999999998754  89999987655533

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=97.05  E-value=0.0004  Score=41.52  Aligned_cols=34  Identities=15%  Similarity=0.391  Sum_probs=27.0

Q ss_pred             cccccccccccccCCCccccCCCCccccHHHHHHH
Q 037529           71 GTECAVCLDEVESEQPARLVPGCNHGFHLQCADSW  105 (133)
Q Consensus        71 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~w  105 (133)
                      +..|+||++++..+....-++ |+|.|+..|+..+
T Consensus         3 e~~C~~C~~~~~~~av~~C~~-C~~~~C~~Cl~~~   36 (101)
T 2jun_A            3 KVLCQFCDQDPAQDAVKTCVT-CEVSYCDECLKAT   36 (101)
T ss_dssp             CCBCTTCCSSSCCBCCEEETT-TTEEECHHHHHHH
T ss_pred             CCCCcCCCCCCCCCceEECCc-CChHHhHHHCHHH
Confidence            467999998765545455577 9999999999983

>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}

Probab=96.30  E-value=0.0031  Score=34.87  Aligned_cols=46  Identities=26%  Similarity=0.572  Sum_probs=33.2

Q ss_pred             CcccccccccccccCCCccccCCCCccccHHHHHHHHhCCC----ccccccccc
Q 037529           70 MGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHS----VCPVCRAKL  119 (133)
Q Consensus        70 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~----~CP~Cr~~v  119 (133)
                      .+..|.||.+.   ++.+.-- .|...||..|+...+....    .||.|+...
T Consensus        11 ~~~~C~vC~~~---~~ll~Cd-~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~   60 (66)
T 2lri_C           11 PGARCGVCGDG---TDVLRCT-HCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV   60 (66)
T ss_dssp             TTCCCTTTSCC---TTCEECS-SSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred             CCCCcCCCCCC---CeEEECC-CCCCceecccCCCccCcCCCCCEECccccCCC
Confidence            45679999753   4444444 4889999999998876532    799998654

>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3

Probab=95.65  E-value=0.02  Score=32.95  Aligned_cols=35  Identities=26%  Similarity=0.339  Sum_probs=24.1

Q ss_pred             CCcccccccccccccCCCccccCCCCccccHHHHHHH
Q 037529           69 VMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSW  105 (133)
Q Consensus        69 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~w  105 (133)
                      ..++.|.||-.- ..++....-- |+-+||..|+.+-
T Consensus        13 ~~D~~C~VC~~~-t~~~l~pCRv-C~RvfH~~CL~r~   47 (89)
T 1wil_A           13 VNDEMCDVCEVW-TAESLFPCRV-CTRVFHDGCLRRM   47 (89)
T ss_dssp             CCSCCCTTTCCC-CSSCCSSCSS-SSSCCCHHHHHHH
T ss_pred             CCCcccCccccc-cccceecccc-ccccccHhhcccc
Confidence            467889999732 2333333222 8999999999996

>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}

Probab=94.33  E-value=0.024  Score=30.65  Aligned_cols=47  Identities=23%  Similarity=0.512  Sum_probs=32.0

Q ss_pred             CCCcccccccccccccCCCccccCCCCccccHHHHHHHHhC----CCcccccccc
Q 037529           68 LVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSK----HSVCPVCRAK  118 (133)
Q Consensus        68 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~----~~~CP~Cr~~  118 (133)
                      ...+..|.+|.+.   ++.+.-- .|.-.||..|+..=+..    +=.||.|++.
T Consensus         8 ~~~~~~C~vC~~~---g~ll~CD-~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~   58 (61)
T 2l5u_A            8 TDHQDYCEVCQQG---GEIILCD-TCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE   58 (61)
T ss_dssp             SCCCSSCTTTSCC---SSEEECS-SSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred             CCCCCCCccCCCC---CcEEECC-CCChhhhhhccCCCCCCCCCCceECcccccc
Confidence            3456789999873   3433333 48889999999975432    2269999753

>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*

Probab=93.59  E-value=0.017  Score=32.49  Aligned_cols=52  Identities=17%  Similarity=0.360  Sum_probs=34.5

Q ss_pred             CCcccccccccccccCCCccccCCCCccccHHHHHHHHhC----CCccccccccccc
Q 037529           69 VMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSK----HSVCPVCRAKLDS  121 (133)
Q Consensus        69 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~----~~~CP~Cr~~v~~  121 (133)
                      .+...|.+|......+..+.-- .|.--||..|+..-...    .-.||.|+..+..
T Consensus        16 ~~~~~C~~C~~~~~~~~mi~CD-~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k   71 (75)
T 2k16_A           16 NQIWICPGCNKPDDGSPMIGCD-DCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKK   71 (75)
T ss_dssp             CEEECBTTTTBCCSSCCEEECS-SSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCS
T ss_pred             CCCcCCCCCCCCCCCCCEEEcC-CCCcccccccCCCCccCCCCCCEEChhccCchhh
Confidence            3446799998875432334333 48888999999765432    3369999876643

>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2

Probab=93.31  E-value=0.035  Score=28.72  Aligned_cols=44  Identities=32%  Similarity=0.659  Sum_probs=28.7

Q ss_pred             cccccccccccCCCccccCCCCccccHHHHHHHHhCC----Cccccccc
Q 037529           73 ECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKH----SVCPVCRA  117 (133)
Q Consensus        73 ~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~----~~CP~Cr~  117 (133)
                      .|.||...-..++.+.-- .|...||..|+.+=+...    -.||.|+.
T Consensus         2 ~C~vC~~~~~~~~ll~Cd-~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~   49 (51)
T 1f62_A            2 RCKVCRKKGEDDKLILCD-ECNKAFHLFCLRPALYEVPDGEWQCPACQP   49 (51)
T ss_dssp             CCTTTCCSSCCSCCEECT-TTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred             CCCCCCCCCCCCCEEECC-CCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence            488888764444444444 488899999997643321    25999975

>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2

Probab=92.80  E-value=0.016  Score=31.59  Aligned_cols=49  Identities=22%  Similarity=0.436  Sum_probs=32.9

Q ss_pred             CCcccccccccccccCC-CccccCCCCccccHHHHHHHHh-----CCCcccccccc
Q 037529           69 VMGTECAVCLDEVESEQ-PARLVPGCNHGFHLQCADSWLS-----KHSVCPVCRAK  118 (133)
Q Consensus        69 ~~~~~C~ICl~~~~~~~-~~~~lp~C~H~fh~~Ci~~wl~-----~~~~CP~Cr~~  118 (133)
                      .++..|++|...+.++. .+.--. |..=||..|+..--.     .+-.||.|+..
T Consensus         4 ~e~~~C~~C~~~~~~~~~mI~Cd~-C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k   58 (64)
T 1we9_A            4 GSSGQCGACGESYAADEFWICCDL-CEMWFHGKCVKITPARAEHIKQYKCPSCSNK   58 (64)
T ss_dssp             SSCCCCSSSCCCCCSSSCEEECSS-SCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred             CCCCCCCCCCCccCCCCCEEEccC-CCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence            34577999999886544 343333 777899999765321     23479999763

>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A

Probab=92.54  E-value=0.02  Score=38.03  Aligned_cols=50  Identities=20%  Similarity=0.450  Sum_probs=34.8

Q ss_pred             cccccccccccccCC----CccccCCCCccccHHHHHH------HHh-----CCCccccccccccc
Q 037529           71 GTECAVCLDEVESEQ----PARLVPGCNHGFHLQCADS------WLS-----KHSVCPVCRAKLDS  121 (133)
Q Consensus        71 ~~~C~ICl~~~~~~~----~~~~lp~C~H~fh~~Ci~~------wl~-----~~~~CP~Cr~~v~~  121 (133)
                      +..|+||...|.+++    .+..- .|..=||..|+.-      -+.     ..-.||.|+..-..
T Consensus         2 G~~CpiC~k~Y~~~~~~~~MIqCd-~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~~   66 (183)
T 3lqh_A            2 GNFCPLCDKCYDDDDYESKMMQCG-KCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHPA   66 (183)
T ss_dssp             CCBCTTTCCBCTTCCTTCCEEECT-TTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSSC
T ss_pred             cCcCCCCcCccCCcccCCCeEECC-CCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCCH
Confidence            467999999998876    33333 3888999999642      111     15689999986443

>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2

Probab=92.41  E-value=0.2  Score=28.36  Aligned_cols=55  Identities=18%  Similarity=0.341  Sum_probs=35.0

Q ss_pred             Cccccccccccccc-CCCccccCCCCccccHHHHHHHHh-----CCCcccccccccccccccc
Q 037529           70 MGTECAVCLDEVES-EQPARLVPGCNHGFHLQCADSWLS-----KHSVCPVCRAKLDSHFFNA  126 (133)
Q Consensus        70 ~~~~C~ICl~~~~~-~~~~~~lp~C~H~fh~~Ci~~wl~-----~~~~CP~Cr~~v~~~~~~~  126 (133)
                      ....| ||...+.+ +..+.--. |..=||..|+.---.     ..-.||.|+..-.+.....
T Consensus        11 ~~~~C-~C~~~~d~~~~MIqCd~-C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~~~~~K~   71 (79)
T 1wep_A           11 VPVYC-LCRQPYNVNHFMIECGL-CQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFGPSIMKN   71 (79)
T ss_dssp             CCCCS-TTSCSCCSSSCEEEBTT-TCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSCSCBCCC
T ss_pred             CccEE-EcCCccCCCCceEEcCC-CCCcEEeeecCcccccccCCCeEECCCcccccCCCceee
Confidence            34556 99988753 33444443 887899999853211     3457999998765544433

>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.39  E-value=0.011  Score=31.45  Aligned_cols=45  Identities=29%  Similarity=0.561  Sum_probs=30.5

Q ss_pred             CCcccccccccccccCCCccccCCCCccccHHHHHHHHhCC----Cccccccc
Q 037529           69 VMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKH----SVCPVCRA  117 (133)
Q Consensus        69 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~----~~CP~Cr~  117 (133)
                      .++..|.+|.+.   ++.+.-- .|...||..|+.+=+...    -.||.|++
T Consensus         7 ~~~~~C~vC~~~---g~ll~Cd-~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~   55 (56)
T 2yql_A            7 GHEDFCSVCRKS---GQLLMCD-TCSRVYHLDCLDPPLKTIPKGMWICPRCQD   55 (56)
T ss_dssp             SSCCSCSSSCCS---SCCEECS-SSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred             CCCCCCccCCCC---CeEEEcC-CCCcceECccCCCCcCCCCCCceEChhhhC
Confidence            456789999874   4444433 488899999998644332    25888864

>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}

Probab=92.37  E-value=0.024  Score=34.36  Aligned_cols=38  Identities=24%  Similarity=0.432  Sum_probs=26.6

Q ss_pred             CCcccccccccccccCCCccccCCCCccccHHHHHHHHh
Q 037529           69 VMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLS  107 (133)
Q Consensus        69 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~  107 (133)
                      .+++.|.+|.+.=...+.+.--. |+..||..|+...+.
T Consensus         5 ~~~~~C~~C~~~g~~~~ll~C~~-C~~~~H~~Cl~~~~~   42 (111)
T 2ysm_A            5 SSGANCAVCDSPGDLLDQFFCTT-CGQHYHGMCLDIAVT   42 (111)
T ss_dssp             CCCSCBTTTCCCCCTTTSEECSS-SCCEECTTTTTCCCC
T ss_pred             CCCCCCcCCCCCCCCcCCeECCC-CCCCcChHHhCCccc
Confidence            45788999987632222344444 899999999988754

>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A

Probab=92.31  E-value=0.022  Score=31.30  Aligned_cols=49  Identities=31%  Similarity=0.524  Sum_probs=32.7

Q ss_pred             CCcccccccccccccCCCccccCCCCccccHHHHHHHHhC----CCccccccccccc
Q 037529           69 VMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSK----HSVCPVCRAKLDS  121 (133)
Q Consensus        69 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~----~~~CP~Cr~~v~~  121 (133)
                      .++..|.||.+.   ++.+.-- .|.-.||..|+.+=+..    .-.||.|...-..
T Consensus         6 ~~~~~C~vC~~~---g~ll~CD-~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~~~   58 (66)
T 1xwh_A            6 KNEDECAVCRDG---GELICCD-GCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQ   58 (66)
T ss_dssp             SCCCSBSSSSCC---SSCEECS-SCCCEECTTTSSSCCSSCCSSCCCCHHHHHTCCC
T ss_pred             CCCCCCccCCCC---CCEEEcC-CCChhhcccccCCCcCcCCCCCeECccccCcccc
Confidence            356789999864   4444333 48889999999864432    2269999865433

>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A

Probab=92.24  E-value=0.026  Score=30.48  Aligned_cols=47  Identities=23%  Similarity=0.492  Sum_probs=31.4

Q ss_pred             CCcccccccccccccCCCccccCCCCccccHHHHHHHHhCC----Cccccccccc
Q 037529           69 VMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKH----SVCPVCRAKL  119 (133)
Q Consensus        69 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~----~~CP~Cr~~v  119 (133)
                      .++..|.+|.+.   ++.+.-- .|...||..|+..-+...    =.||.|+...
T Consensus         7 ~~~~~C~vC~~~---g~ll~Cd-~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~   57 (61)
T 1mm2_A            7 HHMEFCRVCKDG---GELLCCD-TCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA   57 (61)
T ss_dssp             SSCSSCTTTCCC---SSCBCCS-SSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred             CCCCcCCCCCCC---CCEEEcC-CCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence            456789999863   3433333 378899999998644332    2699998643

>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A

Probab=90.91  E-value=0.26  Score=40.50  Aligned_cols=51  Identities=12%  Similarity=0.047  Sum_probs=42.9

Q ss_pred             CCcccccccccccccCCCccccCCCC-ccccHHHHHHHHhCCCccccccccccccc
Q 037529           69 VMGTECAVCLDEVESEQPARLVPGCN-HGFHLQCADSWLSKHSVCPVCRAKLDSHF  123 (133)
Q Consensus        69 ~~~~~C~ICl~~~~~~~~~~~lp~C~-H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~~  123 (133)
                      .+...|||=++-+.+   ..++| -| +.|-+..|..|+..+.+||.=|.+++...
T Consensus       889 P~~F~cPIs~~lM~D---PVilp-sG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~  940 (968)
T 3m62_A          889 PDEFLDPLMYTIMKD---PVILP-ASKMNIDRSTIKAHLLSDSTDPFNRMPLKLED  940 (968)
T ss_dssp             CGGGBCTTTCSBCSS---EEECT-TTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGG
T ss_pred             cHHhCCcchhhHHhC---CeEcC-CCCEEECHHHHHHHHhcCCCCCCCCCCCCccc
Confidence            456779999999887   55777 77 68999999999999999999999887543

>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}

Probab=90.60  E-value=0.075  Score=29.64  Aligned_cols=50  Identities=18%  Similarity=0.408  Sum_probs=32.3

Q ss_pred             CCccccccccccc-ccCCCccccCCCCccccHHHHHHHHhC--CCcccccccc
Q 037529           69 VMGTECAVCLDEV-ESEQPARLVPGCNHGFHLQCADSWLSK--HSVCPVCRAK  118 (133)
Q Consensus        69 ~~~~~C~ICl~~~-~~~~~~~~lp~C~H~fh~~Ci~~wl~~--~~~CP~Cr~~  118 (133)
                      .++..|.||.+.- .+++.+..-..|.-.||..|+..-...  .=.||.|+..
T Consensus        14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~   66 (71)
T 2ku3_A           14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS   66 (71)
T ss_dssp             CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCc
Confidence            4568899998764 233334443348889999998753221  2269999753

>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A

Probab=90.54  E-value=0.059  Score=35.56  Aligned_cols=47  Identities=28%  Similarity=0.509  Sum_probs=32.6

Q ss_pred             CcccccccccccccCCCccccCCCCccccHHHHHHHHhCC----Ccccccccccc
Q 037529           70 MGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKH----SVCPVCRAKLD  120 (133)
Q Consensus        70 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~----~~CP~Cr~~v~  120 (133)
                      +++.|.+|.+.   |+.+..- .|.-.||..|+.+-+...    -.||.|+..-.
T Consensus         3 ~~~~C~~C~~~---g~ll~Cd-~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~   53 (184)
T 3o36_A            3 NEDWCAVCQNG---GELLCCE-KCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSK   53 (184)
T ss_dssp             SCSSCTTTCCC---SSCEECS-SSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred             CCCccccCCCC---CeeeecC-CCCcccCccccCCCCCCCCCCCEECccccCccc
Confidence            45779999854   4434333 388899999987765532    26999997543

>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A

Probab=90.28  E-value=0.36  Score=30.58  Aligned_cols=48  Identities=19%  Similarity=0.400  Sum_probs=33.0

Q ss_pred             CCCCCcccccccccccccCCCccccCCCCccccHHHHHHHHh---------C--CCccccccc
Q 037529           66 KELVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLS---------K--HSVCPVCRA  117 (133)
Q Consensus        66 ~~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~---------~--~~~CP~Cr~  117 (133)
                      .+...++.|.+|-+.   ++ +..-..|--+||..|+.+=+.         .  .=.||.|+.
T Consensus        58 d~Dg~~d~C~vC~~G---G~-LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~  116 (142)
T 2lbm_A           58 DSDGMDEQCRWCAEG---GN-LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP  116 (142)
T ss_dssp             CTTSCBCSCSSSCCC---SS-EEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred             cCCCCCCeecccCCC---Cc-EEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence            334567889999975   44 333234888999999997652         1  227999974

>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}

Probab=90.09  E-value=0.062  Score=31.28  Aligned_cols=55  Identities=16%  Similarity=0.334  Sum_probs=34.5

Q ss_pred             CCccccccccccc-ccCCCccccCCCCccccHHHHHHHHhC--CCccccccccccccc
Q 037529           69 VMGTECAVCLDEV-ESEQPARLVPGCNHGFHLQCADSWLSK--HSVCPVCRAKLDSHF  123 (133)
Q Consensus        69 ~~~~~C~ICl~~~-~~~~~~~~lp~C~H~fh~~Ci~~wl~~--~~~CP~Cr~~v~~~~  123 (133)
                      .++..|.||.+.- .+++.+..-..|.-.||..|+..-...  .=.||.|........
T Consensus        23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~~~   80 (88)
T 2l43_A           23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRARPA   80 (88)
T ss_dssp             CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTSCC
T ss_pred             CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccchhh
Confidence            4567899999763 122233333347788999999863322  226999987654433

>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=89.89  E-value=0.52  Score=26.55  Aligned_cols=46  Identities=26%  Similarity=0.441  Sum_probs=33.5

Q ss_pred             CCcccccccccccccCCCccccCCCCccccHHHHHHHHhCCCccccccccccccccc
Q 037529           69 VMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSHFFN  125 (133)
Q Consensus        69 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~~~~  125 (133)
                      .....|+-|-..+...+.+..   -+..||.+|        ..|-.|++.|....+.
T Consensus        13 ~~~~~C~~C~~~I~~~e~v~a---~~~~wH~~C--------F~C~~C~~~L~~~~~~   58 (82)
T 2co8_A           13 GAGDLCALCGEHLYVLERLCV---NGHFFHRSC--------FRCHTCEATLWPGGYE   58 (82)
T ss_dssp             CSSCBCSSSCCBCCTTTBCCB---TTBCCBTTT--------CBCSSSCCBCCTTSEE
T ss_pred             CCCCCCcccCCCcccceEEEE---CCCeeCCCc--------CEEcCCCCCcCCCcee
Confidence            345789999999876655542   678899777        5688888888765544

>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A

Probab=89.83  E-value=0.15  Score=29.07  Aligned_cols=52  Identities=25%  Similarity=0.448  Sum_probs=31.8

Q ss_pred             CCcccccccccccccCCCccccCCCCccccHHHHHHHHh------CCCcccccccccc
Q 037529           69 VMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLS------KHSVCPVCRAKLD  120 (133)
Q Consensus        69 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~------~~~~CP~Cr~~v~  120 (133)
                      .+...|.+|...|.....-.--..||.+|+..|....+.      ....|-.|...+.
T Consensus        17 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~   74 (82)
T 2yw8_A           17 DEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNELALPSYPKPVRVCDSCHTLLL   74 (82)
T ss_dssp             CCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEEECCTTCSSCEEECHHHHHHTT
T ss_pred             ccCCcccCcCCcccCccccccCCCCCCEEChHHhCCeeecCCCCCcCEECHHHHHHHH
Confidence            345679999999874321111113999999999765421      1125777765544

>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*

Probab=89.59  E-value=0.03  Score=37.72  Aligned_cols=47  Identities=28%  Similarity=0.465  Sum_probs=32.5

Q ss_pred             CCcccccccccccccCCCccccCCCCccccHHHHHHHHhCC----Cccccccccc
Q 037529           69 VMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKH----SVCPVCRAKL  119 (133)
Q Consensus        69 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~----~~CP~Cr~~v  119 (133)
                      .++..|.+|...   ++ +..-..|...||..|+.+-+...    -.||.|+..-
T Consensus         5 ~~~~~C~~C~~~---g~-ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~   55 (207)
T 3u5n_A            5 PNEDWCAVCQNG---GD-LLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG   55 (207)
T ss_dssp             SSCSSBTTTCCC---EE-EEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred             CCCCCCCCCCCC---Cc-eEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence            456789999854   33 33333488899999998765432    2699998753

>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}

Probab=89.45  E-value=0.021  Score=30.74  Aligned_cols=47  Identities=28%  Similarity=0.569  Sum_probs=32.1

Q ss_pred             CcccccccccccccCCCccccCCCCccccHHHHHHHHhC----CCcccccccccc
Q 037529           70 MGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSK----HSVCPVCRAKLD  120 (133)
Q Consensus        70 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~----~~~CP~Cr~~v~  120 (133)
                      ++..|.+|...   ++.+.-- .|.-.||..|+.+=+..    .-.||.|+....
T Consensus         4 ~~~~C~vC~~~---g~ll~Cd-~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~   54 (60)
T 2puy_A            4 HEDFCSVCRKS---GQLLMCD-TCSRVYHLDCLDPPLKTIPKGMWICPRCQDQML   54 (60)
T ss_dssp             CCSSCTTTCCC---SSCEECS-SSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHH
T ss_pred             CCCCCcCCCCC---CcEEEcC-CCCcCEECCcCCCCcCCCCCCceEChhccChhh
Confidence            45789999874   4444444 48889999999864433    226999976543

>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2

Probab=89.20  E-value=0.19  Score=29.24  Aligned_cols=47  Identities=26%  Similarity=0.438  Sum_probs=32.2

Q ss_pred             CCCcccccccccccccCCCccccCCCCccccHHHHHHHHhCC----Ccccccccc
Q 037529           68 LVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKH----SVCPVCRAK  118 (133)
Q Consensus        68 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~----~~CP~Cr~~  118 (133)
                      ..++..|.+|...   ++.+.-- .|.-.||..|+.+=+...    -.||.|+..
T Consensus        22 d~n~~~C~vC~~~---g~LL~CD-~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~   72 (88)
T 1fp0_A           22 DDSATICRVCQKP---GDLVMCN-QCEFCFHLDCHLPALQDVPGEEWSCSLCHVL   72 (88)
T ss_dssp             SSSSSCCSSSCSS---SCCEECT-TSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred             CCCCCcCcCcCCC---CCEEECC-CCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence            3456789999975   4434333 377889999997755432    269999854

>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A

Probab=89.04  E-value=0.62  Score=28.07  Aligned_cols=32  Identities=22%  Similarity=0.458  Sum_probs=22.0

Q ss_pred             ccccccccccc------ccCCCccccCCCCccccHHHHH
Q 037529           71 GTECAVCLDEV------ESEQPARLVPGCNHGFHLQCAD  103 (133)
Q Consensus        71 ~~~C~ICl~~~------~~~~~~~~lp~C~H~fh~~Ci~  103 (133)
                      ...|.+|+..-      ..++.+.-.. |+..||..|+.
T Consensus         5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~-C~~~~H~~Cl~   42 (112)
T 3v43_A            5 IPICSFCLGTKEQNREKKPEELISCAD-CGNSGHPSCLK   42 (112)
T ss_dssp             CSSBTTTCCCTTCCTTSCCCCCEECTT-TCCEECHHHHT
T ss_pred             CccccccCCchhhCcCCCchhceEhhh-cCCCCCCchhc
Confidence            46799998753      1223444444 99999999995

>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}

Probab=89.00  E-value=0.098  Score=31.01  Aligned_cols=45  Identities=18%  Similarity=0.319  Sum_probs=31.2

Q ss_pred             cccccccccccccCCCccccCCCCccccHHHHHHHHhC---CCccccccc
Q 037529           71 GTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSK---HSVCPVCRA  117 (133)
Q Consensus        71 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~---~~~CP~Cr~  117 (133)
                      ...| ||-.....+..+.--. |.--||..|+..=...   .-.||.|+.
T Consensus        28 ~vrC-iC~~~~~~~~mi~Cd~-C~~w~H~~C~~~~~~~~p~~w~C~~C~~   75 (98)
T 2lv9_A           28 VTRC-ICGFTHDDGYMICCDK-CSVWQHIDCMGIDRQHIPDTYLCERCQP   75 (98)
T ss_dssp             BCCC-TTSCCSCSSCEEEBTT-TCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred             CEEe-ECCCccCCCcEEEcCC-CCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence            3557 8987766666555554 8899999998653222   237999974

>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*

Probab=87.87  E-value=0.43  Score=26.00  Aligned_cols=33  Identities=33%  Similarity=0.694  Sum_probs=24.4

Q ss_pred             cccccccccccccCCCccccC-CCCccccHHHHH
Q 037529           71 GTECAVCLDEVESEQPARLVP-GCNHGFHLQCAD  103 (133)
Q Consensus        71 ~~~C~ICl~~~~~~~~~~~lp-~C~H~fh~~Ci~  103 (133)
                      ...|++|...+.+++..+.-. .|.--||..|+.
T Consensus         8 ~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg   41 (65)
T 2vpb_A            8 VYPCGICTNEVNDDQDAILCEASCQKWFHRICTG   41 (65)
T ss_dssp             -CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred             cCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence            467999999988766554433 488789999964

>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A

Probab=87.61  E-value=0.082  Score=32.09  Aligned_cols=46  Identities=28%  Similarity=0.819  Sum_probs=29.5

Q ss_pred             ccccccccccccCCCccccCCCCccccHHHHHHHHhCC----Cccccccc
Q 037529           72 TECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKH----SVCPVCRA  117 (133)
Q Consensus        72 ~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~----~~CP~Cr~  117 (133)
                      ..|.+|.+.-.+++.+..-..|...||..|+++-+...    =.||.|+.
T Consensus        62 ~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~  111 (112)
T 3v43_A           62 KTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP  111 (112)
T ss_dssp             CCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred             CccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence            46888886522323333333488999999987654432    26999975

>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.21  E-value=0.051  Score=31.91  Aligned_cols=49  Identities=24%  Similarity=0.479  Sum_probs=32.6

Q ss_pred             CCcccccccccccccCCCccccCCCCccccHHHHHHHHhC----CCcccccccc
Q 037529           69 VMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSK----HSVCPVCRAK  118 (133)
Q Consensus        69 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~----~~~CP~Cr~~  118 (133)
                      .++..|.||...-..+..+..- .|...||..|+.+=+..    .=.||.|+..
T Consensus        14 ~~~~~C~vC~~~~~~~~ll~CD-~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~   66 (92)
T 2e6r_A           14 IDSYICQVCSRGDEDDKLLFCD-GCDDNYHIFCLLPPLPEIPRGIWRCPKCILA   66 (92)
T ss_dssp             CCCCCCSSSCCSGGGGGCEECT-TTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred             cCCCCCccCCCcCCCCCEEEcC-CCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence            3456799999875433344333 48889999999753332    2269999864

>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}

Probab=87.05  E-value=0.55  Score=26.82  Aligned_cols=52  Identities=15%  Similarity=0.270  Sum_probs=31.7

Q ss_pred             CCcccccccccccccCCCccccCCCCccccHHHHHHHHh--------CCCcccccccccc
Q 037529           69 VMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLS--------KHSVCPVCRAKLD  120 (133)
Q Consensus        69 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~--------~~~~CP~Cr~~v~  120 (133)
                      .+...|.+|...|..-..-.--..||++|+.+|......        ....|-.|...+.
T Consensus        19 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~lp~~~~~~~~RVC~~C~~~l~   78 (84)
T 1z2q_A           19 EDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHRAAIPMRGITEPERVCDACYLALR   78 (84)
T ss_dssp             TTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCEEEETTTTEEEEEECCHHHHHHHH
T ss_pred             CCCCCCcCcCCccccchhcccccCCCcEEChHHhCCeEeccCCCCCCCCEECHHHHHHHh
Confidence            345789999999875321111113999999999765421        1225666655443

>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A

Probab=86.44  E-value=0.83  Score=28.43  Aligned_cols=50  Identities=18%  Similarity=0.390  Sum_probs=32.5

Q ss_pred             cCCCCCcccccccccccccCCCccccCCCCccccHHHHHHHH------h-----CCCcccccccc
Q 037529           65 GKELVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWL------S-----KHSVCPVCRAK  118 (133)
Q Consensus        65 ~~~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl------~-----~~~~CP~Cr~~  118 (133)
                      .++...++.|.+|-+.   ++ +..-..|-..||.+|+.+-+      +     ..=.|+.|+..
T Consensus        51 ~d~Dg~~~~C~vC~dG---G~-LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~  111 (129)
T 3ql9_A           51 RDSDGMDEQCRWCAEG---GN-LICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE  111 (129)
T ss_dssp             BCTTSCBSSCTTTCCC---SE-EEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred             cCCCCCCCcCeecCCC---Ce-eEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence            3344556789999975   33 32323488999999999742      1     12279999653

>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}

Probab=85.68  E-value=2.6  Score=22.04  Aligned_cols=16  Identities=6%  Similarity=0.102  Sum_probs=7.0

Q ss_pred             HHHHHHHHHHHHHHHH
Q 037529            4 SVILALFLPCAGMSLV   19 (133)
Q Consensus         4 ~~~l~~~~~~~~~~~~   19 (133)
                      .++++++...+.++++
T Consensus        14 iIi~svl~GLllL~li   29 (54)
T 2knc_A           14 WVLVGVLGGLLLLTIL   29 (54)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            4444444444444333

>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2

Probab=85.67  E-value=0.41  Score=25.62  Aligned_cols=43  Identities=21%  Similarity=0.477  Sum_probs=28.6

Q ss_pred             ccccccccccccCCCccccCCCCccccHHHHHHHHhCCCccccc
Q 037529           72 TECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVC  115 (133)
Q Consensus        72 ~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~C  115 (133)
                      ..|--|...+.+... ..-++|++.|+.+|=.--=++=.+||.|
T Consensus        16 ~~C~~C~~~~~~~~~-y~C~~C~~~FC~dCD~fiHe~Lh~CPgC   58 (59)
T 1z60_A           16 RFCYGCQGELKDQHV-YVCAVCQNVFCVDCDVFVHDSLHSCPGC   58 (59)
T ss_dssp             CEETTTTEECTTSEE-ECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred             CcccccCcccCCCcc-EECCccCcCcccchhHHHHhhccCCcCC
Confidence            459999999864332 3344599999999943322233579987

>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}

Probab=85.63  E-value=0.093  Score=28.96  Aligned_cols=49  Identities=24%  Similarity=0.446  Sum_probs=31.4

Q ss_pred             CCCCcccccccccccccCCCccccCCCCccccHHHHHHHHh---CCCccccccc
Q 037529           67 ELVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLS---KHSVCPVCRA  117 (133)
Q Consensus        67 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~---~~~~CP~Cr~  117 (133)
                      ...+...| ||-..+..+..+.--. |..=||..|+..--.   ..-.||.|+.
T Consensus        15 ~~~~~~~C-iC~~~~~~~~MIqCd~-C~~WfH~~Cvgi~~~~~~~~~~C~~C~~   66 (68)
T 3o70_A           15 YFQGLVTC-FCMKPFAGRPMIECNE-CHTWIHLSCAKIRKSNVPEVFVCQKCRD   66 (68)
T ss_dssp             TTTTCCCS-TTCCCCTTCCEEECTT-TCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred             CCCCceEe-ECCCcCCCCCEEECCC-CCccccccccCcCcccCCCcEECCCCCC
Confidence            33455678 9988765434454444 888899999864221   2347999875

>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}

Probab=85.57  E-value=0.13  Score=34.19  Aligned_cols=45  Identities=27%  Similarity=0.519  Sum_probs=30.8

Q ss_pred             cccccccccccccCCCccccCCCCccccHHHHHHHHhC----CCccccccccc
Q 037529           71 GTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSK----HSVCPVCRAKL  119 (133)
Q Consensus        71 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~----~~~CP~Cr~~v  119 (133)
                      ++.|.+|.+.   ++.+..- .|.-.||..|+.+=+..    .-.||.|+..-
T Consensus         2 ~~~C~~C~~~---g~ll~Cd-~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~   50 (189)
T 2ro1_A            2 ATICRVCQKP---GDLVMCN-QCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP   50 (189)
T ss_dssp             CCCBTTTCCC---SSCCCCT-TTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred             CCcCccCCCC---CceeECC-CCCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence            4679999864   4444444 38889999999764432    22699998753

>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}

Probab=84.80  E-value=0.08  Score=31.83  Aligned_cols=50  Identities=28%  Similarity=0.576  Sum_probs=32.9

Q ss_pred             ccccccccccccCCCccccC-CCCccccHHHHHHH------H--h--CCCccccccccccc
Q 037529           72 TECAVCLDEVESEQPARLVP-GCNHGFHLQCADSW------L--S--KHSVCPVCRAKLDS  121 (133)
Q Consensus        72 ~~C~ICl~~~~~~~~~~~lp-~C~H~fh~~Ci~~w------l--~--~~~~CP~Cr~~v~~  121 (133)
                      ..|.||...+.++.....-. .|.-=||.+|+.-=      +  +  .+-.||.|+..-..
T Consensus         4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~~   64 (105)
T 2xb1_A            4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKEG   64 (105)
T ss_dssp             CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTTT
T ss_pred             CCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCCC
Confidence            56999999987655443321 37777999996432      1  0  23479999976543

>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}

Probab=84.45  E-value=0.69  Score=26.80  Aligned_cols=52  Identities=17%  Similarity=0.384  Sum_probs=33.3

Q ss_pred             CcccccccccccccCCCccccCCCCccccHHHHHHHHh------CCCccccccccccc
Q 037529           70 MGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLS------KHSVCPVCRAKLDS  121 (133)
Q Consensus        70 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~------~~~~CP~Cr~~v~~  121 (133)
                      +...|.+|...|..-..-..-..||++|+..|......      ....|-.|...+..
T Consensus        19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~~   76 (90)
T 3t7l_A           19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYETISK   76 (90)
T ss_dssp             GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHHHHHH
T ss_pred             cCCcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCCCCCCeECHHHHHHHHH
Confidence            34679999999874321111224999999999776531      12357777766544

>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}

Probab=84.30  E-value=3  Score=21.74  Aligned_cols=20  Identities=15%  Similarity=0.242  Sum_probs=8.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 037529            3 VSVILALFLPCAGMSLVFIV   22 (133)
Q Consensus         3 ~~~~l~~~~~~~~~~~~~~~   22 (133)
                      +++++|++...+.++++.++
T Consensus        10 WiIi~svl~GLLLL~Lii~~   29 (54)
T 2l8s_A           10 WVILLSAFAGLLLLMLLILA   29 (54)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            34445555444444433333

>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2

Probab=83.59  E-value=0.14  Score=29.70  Aligned_cols=52  Identities=17%  Similarity=0.436  Sum_probs=34.4

Q ss_pred             ccccccccccccc-CCCccccCCCCccccHHHHHHHHh--------CCCcccccccccccc
Q 037529           71 GTECAVCLDEVES-EQPARLVPGCNHGFHLQCADSWLS--------KHSVCPVCRAKLDSH  122 (133)
Q Consensus        71 ~~~C~ICl~~~~~-~~~~~~lp~C~H~fh~~Ci~~wl~--------~~~~CP~Cr~~v~~~  122 (133)
                      +..|.+|...-.. +..+..-..|...||..|+.+=+.        ..=.||.|+......
T Consensus        16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~~   76 (88)
T 1wev_A           16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKRM   76 (88)
T ss_dssp             CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCCS
T ss_pred             CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhhh
Confidence            5679999986442 233444334888999999986543        123799998765443

>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=83.39  E-value=0.73  Score=25.32  Aligned_cols=43  Identities=19%  Similarity=0.417  Sum_probs=30.8

Q ss_pred             cccccccccccccCCCccccCCCCccccHHHHHHHHhCCCccccccccccccc
Q 037529           71 GTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSHF  123 (133)
Q Consensus        71 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~~  123 (133)
                      ...|+-|-+.+..++.+...  -|..||.+|        ..|-.|++.+....
T Consensus        11 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~~~   53 (77)
T 1g47_A           11 SATCERCKGGFAPAEKIVNS--NGELYHEQC--------FVCAQCFQQFPEGL   53 (77)
T ss_dssp             CCBCSSSCCBCCSTTTCEEE--TTEEECTTT--------CCCTTTCCCCGGGC
T ss_pred             CCCchhcCCccCCCceEEEe--CccEecccc--------CeECCCCCCCCCCC
Confidence            46799999998765544322  678899776        56888888887654

>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*

Probab=83.25  E-value=0.25  Score=32.13  Aligned_cols=47  Identities=19%  Similarity=0.482  Sum_probs=31.2

Q ss_pred             CcccccccccccccCC-CccccCCCCccccHHHHHHHH-----hCCCcccccccc
Q 037529           70 MGTECAVCLDEVESEQ-PARLVPGCNHGFHLQCADSWL-----SKHSVCPVCRAK  118 (133)
Q Consensus        70 ~~~~C~ICl~~~~~~~-~~~~lp~C~H~fh~~Ci~~wl-----~~~~~CP~Cr~~  118 (133)
                      +...| +|...+.++. .+..- .|.--||..|+..--     ...-.||.|+..
T Consensus         7 ~~~~C-~C~~~~~~~~~mi~Cd-~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~   59 (174)
T 2ri7_A            7 TKLYC-ICKTPEDESKFYIGCD-RCQNWYHGRCVGILQSEAELIDEYVCPQCQST   59 (174)
T ss_dssp             CCEET-TTTEECCTTSCEEECT-TTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred             CCcEe-eCCCCCCCCCCEeECC-CCCchhChhhcCCchhhccCccCeecCCCcch
Confidence            45678 9998875443 34333 388889999985321     124479999864

>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1

Probab=83.03  E-value=4.8  Score=23.31  Aligned_cols=51  Identities=18%  Similarity=0.417  Sum_probs=35.5

Q ss_pred             CcccccccccccccCC--Ccccc-CCCCccccHHHHHHHHhC-CCcccccccccc
Q 037529           70 MGTECAVCLDEVESEQ--PARLV-PGCNHGFHLQCADSWLSK-HSVCPVCRAKLD  120 (133)
Q Consensus        70 ~~~~C~ICl~~~~~~~--~~~~l-p~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~v~  120 (133)
                      ....|.||-+++....  .+.+. -.|+--.|+.|++-=.+. ++.||-|++...
T Consensus        15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk   69 (93)
T 1weo_A           15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK   69 (93)
T ss_dssp             SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred             CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence            4578999999975433  22221 125566899999876655 568999999875

>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1

Probab=83.02  E-value=0.71  Score=25.58  Aligned_cols=34  Identities=12%  Similarity=0.321  Sum_probs=22.7

Q ss_pred             cccccccccccccCCCccccCCCCccccHHHHHH
Q 037529           71 GTECAVCLDEVESEQPARLVPGCNHGFHLQCADS  104 (133)
Q Consensus        71 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~  104 (133)
                      +..|.+|...|..-..-.--..||.+|+.+|...
T Consensus        11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~   44 (73)
T 1vfy_A           11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN   44 (73)
T ss_dssp             CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred             CCcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence            3589999999874321111113999999999653

>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82

Probab=82.26  E-value=0.19  Score=30.09  Aligned_cols=21  Identities=29%  Similarity=0.754  Sum_probs=14.6

Q ss_pred             CCccccHHHHHHHHhCCCcccccccc
Q 037529           93 CNHGFHLQCADSWLSKHSVCPVCRAK  118 (133)
Q Consensus        93 C~H~fh~~Ci~~wl~~~~~CP~Cr~~  118 (133)
                      ||+.|.     .=+.....||.|++.
T Consensus        73 CG~~F~-----~~~~kPsrCP~CkSe   93 (105)
T 2gmg_A           73 CGFVFK-----AEINIPSRCPKCKSE   93 (105)
T ss_dssp             TCCBCC-----CCSSCCSSCSSSCCC
T ss_pred             CcCeec-----ccCCCCCCCcCCCCC
Confidence            999991     112345689999985

>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A

Probab=82.24  E-value=0.75  Score=28.37  Aligned_cols=33  Identities=18%  Similarity=0.382  Sum_probs=23.9

Q ss_pred             CcccccccccccccCC---CccccCCCCccccHHHHHHH
Q 037529           70 MGTECAVCLDEVESEQ---PARLVPGCNHGFHLQCADSW  105 (133)
Q Consensus        70 ~~~~C~ICl~~~~~~~---~~~~lp~C~H~fh~~Ci~~w  105 (133)
                      +...|.+|...|....   +.+   .||++||..|....
T Consensus        68 ~~~~C~~C~~~Fs~~~RrHHCR---~CG~vfC~~Cs~~~  103 (125)
T 1joc_A           68 EVQNCMACGKGFSVTVRRHHCR---QCGNIFCAECSAKN  103 (125)
T ss_dssp             GCCBCTTTCCBCCSSSCCEECT---TTCCEECGGGSCEE
T ss_pred             CCCCCcCcCCccccccccccCC---CCCeEEChHHhCCc
Confidence            3467999999987532   233   39999999996543

>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=82.00  E-value=0.69  Score=25.07  Aligned_cols=42  Identities=21%  Similarity=0.443  Sum_probs=29.0

Q ss_pred             ccccccccccccCCCccccCCCCccccHHHHHHHHhCCCccccccccccccc
Q 037529           72 TECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSHF  123 (133)
Q Consensus        72 ~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~~  123 (133)
                      ..|+-|-+.+..++.+.. . -|..||.+|        ..|-.|++.|....
T Consensus         6 ~~C~~C~~~I~~~~~~~~-a-~~~~~H~~C--------F~C~~C~~~L~~~~   47 (72)
T 1wyh_A            6 SGCSACGETVMPGSRKLE-Y-GGQTWHEHC--------FLCSGCEQPLGSRS   47 (72)
T ss_dssp             CBCSSSCCBCCSSSCEEC-S-TTCCEETTT--------CBCTTTCCBTTTSC
T ss_pred             CCCccCCCccccCccEEE-E-CccccCccc--------CeECCCCCcCCCCc
Confidence            568889888876543322 2 678888766        46888888876543

>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=81.70  E-value=0.51  Score=26.01  Aligned_cols=43  Identities=19%  Similarity=0.392  Sum_probs=31.8

Q ss_pred             cccccccccccccCCCccccCCCCccccHHHHHHHHhCCCcccccccccccccc
Q 037529           71 GTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSHFF  124 (133)
Q Consensus        71 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~~~  124 (133)
                      ...|+-|-+.+..++.+.  . -+..||.+|        ..|..|++.|....+
T Consensus         9 ~~~C~~C~~~I~~~~~v~--a-~~~~~H~~C--------F~C~~C~~~L~~~~~   51 (76)
T 2cu8_A            9 ASKCPKCDKTVYFAEKVS--S-LGKDWHKFC--------LKCERCSKTLTPGGH   51 (76)
T ss_dssp             CCBCTTTCCBCCTTTEEE--E-TTEEEETTT--------CBCSSSCCBCCTTSC
T ss_pred             CCCCcCCCCEeECCeEEE--E-CCeEeeCCC--------CCCCCCCCccCCCce
Confidence            467999999988666543  2 678899776        568999988876533

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=80.88  E-value=0.44  Score=22.50  Aligned_cols=16  Identities=25%  Similarity=0.607  Sum_probs=11.1

Q ss_pred             CcccccccccccccCC
Q 037529           70 MGTECAVCLDEVESEQ   85 (133)
Q Consensus        70 ~~~~C~ICl~~~~~~~   85 (133)
                      ++..||+|+.++...+
T Consensus         4 EGFiCP~C~~~l~s~~   19 (34)
T 3mjh_B            4 EGFICPQCMKSLGSAD   19 (34)
T ss_dssp             EEEECTTTCCEESSHH
T ss_pred             cccCCcHHHHHcCCHH
Confidence            3577888888776543

>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}

Probab=80.77  E-value=0.43  Score=25.81  Aligned_cols=51  Identities=18%  Similarity=0.507  Sum_probs=33.0

Q ss_pred             CCccccccccccccc-CCCccccCCCCccccHHHHHHHHh-------CCCccccccccc
Q 037529           69 VMGTECAVCLDEVES-EQPARLVPGCNHGFHLQCADSWLS-------KHSVCPVCRAKL  119 (133)
Q Consensus        69 ~~~~~C~ICl~~~~~-~~~~~~lp~C~H~fh~~Ci~~wl~-------~~~~CP~Cr~~v  119 (133)
                      .++..|.+|...... +..+..-..|.-.||..|+..=+.       ..=.||.|+...
T Consensus         4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~   62 (66)
T 2yt5_A            4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT   62 (66)
T ss_dssp             CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred             CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence            456789999987532 233333334888999999886321       223799997643

>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=80.56  E-value=1  Score=25.63  Aligned_cols=32  Identities=16%  Similarity=0.393  Sum_probs=23.3

Q ss_pred             CcccccccccccccCC---CccccCCCCccccHHHHHH
Q 037529           70 MGTECAVCLDEVESEQ---PARLVPGCNHGFHLQCADS  104 (133)
Q Consensus        70 ~~~~C~ICl~~~~~~~---~~~~lp~C~H~fh~~Ci~~  104 (133)
                      +...|.+|...|..-.   +.+   .||.+|+..|...
T Consensus        13 ~~~~C~~C~~~F~~~~RrHHCR---~CG~vfC~~Cs~~   47 (84)
T 1x4u_A           13 NFGNCTGCSATFSVLKKRRSCS---NCGNSFCSRCCSF   47 (84)
T ss_dssp             CCSSCSSSCCCCCSSSCCEECS---SSCCEECTTTSCE
T ss_pred             CCCcCcCcCCccccchhhhhhc---CCCcEEChhhcCC
Confidence            3468999999986432   232   3999999999654

>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1

Probab=80.43  E-value=0.15  Score=31.38  Aligned_cols=48  Identities=15%  Similarity=0.436  Sum_probs=30.1

Q ss_pred             cccccccccccccCCCccccCCCCccccHHHHHHHHhCCCcccccccc
Q 037529           71 GTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAK  118 (133)
Q Consensus        71 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~  118 (133)
                      ...|..|-..|..-..-..-.+||.+||..|..........|-.|...
T Consensus        19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~   66 (120)
T 1y02_A           19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRF   66 (120)
T ss_dssp             -CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHH
T ss_pred             cCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHH
Confidence            467999999987432111112499999999977665556678888654

>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=80.40  E-value=1.1  Score=24.20  Aligned_cols=44  Identities=20%  Similarity=0.390  Sum_probs=29.7

Q ss_pred             ccccccccccccc--CCCccccCCCCccccHHHHHHHHhCCCcccccccccccccc
Q 037529           71 GTECAVCLDEVES--EQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSHFF  124 (133)
Q Consensus        71 ~~~C~ICl~~~~~--~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~~~  124 (133)
                      ...|+-|-+.+..  ++.+. .. -+..||.+|        ..|-.|++.|....+
T Consensus         5 ~~~C~~C~~~I~~~~~~~~~-~a-~~~~wH~~C--------F~C~~C~~~L~~~~f   50 (72)
T 1x4l_A            5 SSGCAGCTNPISGLGGTKYI-SF-EERQWHNDC--------FNCKKCSLSLVGRGF   50 (72)
T ss_dssp             SCSBTTTTBCCCCSSSCSCE-EC-SSCEECTTT--------CBCSSSCCBCTTSCC
T ss_pred             CCCCcCCCccccCCCCcceE-EE-CCcccCccc--------CEeccCCCcCCCCcc
Confidence            3568999988875  33332 22 678899776        468888888865443

>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1

Probab=80.35  E-value=0.96  Score=26.11  Aligned_cols=54  Identities=19%  Similarity=0.312  Sum_probs=34.7

Q ss_pred             CcccccccccccccCCCccccCCCCccccHHHHHHHHh-------CCCccccccccccccc
Q 037529           70 MGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLS-------KHSVCPVCRAKLDSHF  123 (133)
Q Consensus        70 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~-------~~~~CP~Cr~~v~~~~  123 (133)
                      +...|.+|...|..-..-.--..||++|+..|....+.       ....|-.|...+....
T Consensus         8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~~~~   68 (88)
T 1wfk_A            8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILTRGS   68 (88)
T ss_dssp             CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHHHCC
T ss_pred             cCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHHHhcc
Confidence            34689999999875321111113999999999765321       1236888887765543

>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}

Probab=80.11  E-value=0.12  Score=29.27  Aligned_cols=44  Identities=30%  Similarity=0.747  Sum_probs=27.0

Q ss_pred             cccccccccccCCCccccCCCCccccHHHHHHHHhC----C-Cccccccc
Q 037529           73 ECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSK----H-SVCPVCRA  117 (133)
Q Consensus        73 ~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~----~-~~CP~Cr~  117 (133)
                      .|.+|...-..+..+ .-..|...||..|+.+-|..    . =.||.|++
T Consensus        28 ~C~vC~~~~d~~~ll-~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~   76 (77)
T 3shb_A           28 ACHLCGGRQDPDKQL-MCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN   76 (77)
T ss_dssp             SBTTTCCCSCGGGEE-ECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred             cCCccCCCCCCccee-EeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence            466776653333333 32247889999999865543    1 36998875

>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=80.02  E-value=1.4  Score=23.83  Aligned_cols=41  Identities=32%  Similarity=0.725  Sum_probs=23.8

Q ss_pred             ccccccccccccCCCccccCCCCccccHHHHHHHHhCCCcccccccccccc
Q 037529           72 TECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSH  122 (133)
Q Consensus        72 ~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~  122 (133)
                      ..|+-|-+.+..++... .. -+..||.+|        ..|-.|++.|...
T Consensus         6 ~~C~~C~~~I~~~~~~~-~a-~~~~~H~~C--------F~C~~C~~~L~~~   46 (72)
T 1x61_A            6 SGCGGCGEDVVGDGAGV-VA-LDRVFHVGC--------FVCSTCRAQLRGQ   46 (72)
T ss_dssp             CCCSSSCSCCCSSSCCE-EC-SSSEECTTT--------CBCSSSCCBCTTS
T ss_pred             CCCccCCCccCCCceEE-EE-CCCeEcccC--------CcccccCCcCCcC
Confidence            45777777766533222 22 566777655        4577777776543

>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*

Probab=80.02  E-value=0.32  Score=25.15  Aligned_cols=44  Identities=18%  Similarity=0.399  Sum_probs=27.8

Q ss_pred             cccccccccccCCCccccC-CCCccccHHHHHHH----HhCCCcccccc
Q 037529           73 ECAVCLDEVESEQPARLVP-GCNHGFHLQCADSW----LSKHSVCPVCR  116 (133)
Q Consensus        73 ~C~ICl~~~~~~~~~~~lp-~C~H~fh~~Ci~~w----l~~~~~CP~Cr  116 (133)
                      .|.+|...+.+++..+.-. .|.-=||..|+.--    ...+..||.|+
T Consensus         4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~   52 (52)
T 2kgg_A            4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA   52 (52)
T ss_dssp             SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred             cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence            4778988886555443322 27777999996532    12456788885

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	133
d1iyma_	55	g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati	2e-15
d1chca_	68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	5e-12
d3dplr1	88	g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of S	1e-08
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	2e-08
d1g25a_	65	g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi	2e-07
d1ur6b_	52	g.44.1.1 (B:) Not-4 N-terminal RING finger domain	2e-07
d1bora_	56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	1e-05
d1vyxa_	60	g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal do	1e-05
d1v87a_	114	g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mou	2e-05
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	5e-04
d1wima_	94	g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA016	5e-04
d1rmda2	86	g.44.1.1 (A:1-86) V(D)J recombination activating p	0.002

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

 Score = 63.7 bits (155), Expect = 2e-15
 Identities = 27/49 (55%), Positives = 33/49 (67%)

Query: 71  GTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKL 119
           G ECAVCL E+E  + AR +P C HGFH +C D WL  HS CP+CR  +
Sbjct: 5   GVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

 Score = 55.0 bits (132), Expect = 5e-12
 Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 4/62 (6%)

Query: 70  MGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSHFFNALES 129
           +   C +CL++      +  +P C H F   C   W+ ++  CP+C+  ++S     +ES
Sbjct: 4   VAERCPICLEDPS--NYSMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVESVVHT-IES 59

Query: 130 DN 131
           D+
Sbjct: 60  DS 61

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (111), Expect = 1e-08
 Identities = 14/62 (22%), Positives = 20/62 (32%), Gaps = 14/62 (22%)

Query: 73  ECAVCLDEVESEQPARLVPG--------------CNHGFHLQCADSWLSKHSVCPVCRAK 118
            CA+C + +                         CNH FH  C   WL    VCP+   +
Sbjct: 23  NCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNRE 82

Query: 119 LD 120
            +
Sbjct: 83  WE 84

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (110), Expect = 2e-08
 Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 5/50 (10%)

Query: 74  CAVCLDEVESEQPARLVPGCNHGFHLQCADSWL-SKHSVCPVCRAKLDSH 122
           C +C +  +     ++ P C H     C  SW  S+   CP CR ++   
Sbjct: 26  CKICAENDKD---VKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 71

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (101), Expect = 2e-07
 Identities = 12/54 (22%), Positives = 14/54 (25%), Gaps = 2/54 (3%)

Query: 73  ECAVCLDEVESEQPARLVP-GCNHGFHLQCADSWLS-KHSVCPVCRAKLDSHFF 124
            C  C          +L+   C H     C D         CP C   L    F
Sbjct: 5   GCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNF 58

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (100), Expect = 2e-07
 Identities = 10/49 (20%), Positives = 20/49 (40%), Gaps = 1/49 (2%)

Query: 73  ECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLS-KHSVCPVCRAKLD 120
           EC +C++ +E +        C +     C     + ++ +CP CR    
Sbjct: 2   ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYP 50

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (89), Expect = 1e-05
 Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 7/47 (14%)

Query: 73  ECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKL 119
            C  C  E +     +L+P C H     C ++       CP+C+A  
Sbjct: 8   RCQQCQAEAKC---PKLLP-CLHTLCSGCLEAS---GMQCPICQAPW 47

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Length = 60

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

 Score = 38.3 bits (88), Expect = 1e-05
 Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 3/48 (6%)

Query: 74  CAVCLDEVESEQ-PARLVPGCNHGFHLQCADSWLSKH--SVCPVCRAK 118
           C +C +E+ +E+  A    G     H  C  +WL+    + C +C   
Sbjct: 9   CWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVV 56

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 114

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.2 bits (90), Expect = 2e-05
 Identities = 9/54 (16%), Positives = 15/54 (27%), Gaps = 5/54 (9%)

Query: 70  MGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSK-----HSVCPVCRAK 118
                 +   +         +  C+H FHL C  +            CP C+  
Sbjct: 38  ASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTI 91

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (80), Expect = 5e-04
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 7/50 (14%)

Query: 73  ECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHS---VCPVCRAKL 119
           EC +CL+ ++  +P      C+H F   C    L++      CP+C+  +
Sbjct: 23  ECPICLELIK--EPVST--KCDHIFCKFCMLKLLNQKKGPSQCPLCKNDI 68

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.7 bits (79), Expect = 5e-04
 Identities = 12/60 (20%), Positives = 17/60 (28%), Gaps = 9/60 (15%)

Query: 72  TECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHS--------VCPVCRAKLDSHF 123
           + C +CL E   EQ   +   C   F   C   ++             CP        H 
Sbjct: 6   SGCKLCLGEYPVEQMTTI-AQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHL 64

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 33.0 bits (75), Expect = 0.002
 Identities = 12/49 (24%), Positives = 15/49 (30%), Gaps = 5/49 (10%)

Query: 74  CAVCLDEVESEQPARLVPGCNHGFHLQCADSWL-SKHSVCPVCRAKLDS 121
           C +C   +       +   C H F   C    L    S CP CR     
Sbjct: 26  CQICEHILAD----PVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP 70

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	133
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	99.87
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	99.77
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	99.75
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	99.72
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	99.71
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	99.71
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	99.69
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	99.6
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	99.59
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	99.56
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	99.52
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	99.52
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	99.37
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	99.37
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	99.35
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	99.23
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	99.06
d1wila_	89	Hypothetical protein KIAA1045 {Human (Homo sapiens	96.32
d1f62a_	51	Williams-Beuren syndrome transcription factor, WST	95.98
d1we9a_	64	PHD finger protein At5g26210 {Thale cress (Arabido	94.91
d1z60a1	59	TFIIH p44 subunit cysteine-rich domain {Human (Hom	94.89
d1fp0a1	70	Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo	93.99
d1mm2a_	61	Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606	93.45
d1y02a2	51	Rififylin (FYVE-RING finger protein Sakura) {Human	90.37
d1wepa_	79	PHD finger protein 8 {Mouse (Mus musculus) [TaxId:	89.19
d1dvpa2	72	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	87.9
d1weva_	88	PHD finger protein 22 {Mouse (Mus musculus) [TaxId	86.49
d1wema_	76	Death associated transcription factor 1, Datf1 (DI	84.84
d1joca1	64	Eea1 {Human (Homo sapiens) [TaxId: 9606]}	84.51
d1wesa_	71	PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu	83.83
d2co8a2	36	Nedd9 interacting protein with calponin homology,	83.67
d1vfya_	67	vps27p protein {Baker's yeast (Saccharomyces cerev	82.83
d1rutx3	31	LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10	81.28
d1wfka_	88	Zinc finger FYVE domain containing protein 19 {Mou	81.12
d2cs3a1	80	Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [	80.81

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.87  E-value=1.5e-23  Score=113.46  Aligned_cols=52  Identities=52%  Similarity=1.145  Sum_probs=46.8

Q ss_pred             CCcccccccccccccCCCccccCCCCccccHHHHHHHHhCCCcccccccccc
Q 037529           69 VMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLD  120 (133)
Q Consensus        69 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~  120 (133)
                      +++.+|+||+++|.+++.+..++.|||.||.+||.+|++++.+||+||++|.
T Consensus         3 ed~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~   54 (55)
T d1iyma_           3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHhCCcCCCCCCEeE
Confidence            4567899999999999988887669999999999999999999999999863

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=99.77  E-value=5.4e-20  Score=103.59  Aligned_cols=52  Identities=25%  Similarity=0.839  Sum_probs=44.2

Q ss_pred             CcccccccccccccCCCccccCCCCccccHHHHHHHHhCCCcccccccccccccc
Q 037529           70 MGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSHFF  124 (133)
Q Consensus        70 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~~~  124 (133)
                      ..++|+||++.+.+  ..+.+| |||.||.+||..|++.+.+||+||+++.....
T Consensus         4 ~~d~C~IC~~~~~~--~~~~~~-C~H~Fc~~Ci~~w~~~~~~CP~CR~~i~~~~~   55 (68)
T d1chca_           4 VAERCPICLEDPSN--YSMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVESVVH   55 (68)
T ss_dssp             CCCCCSSCCSCCCS--CEEETT-TTEEESTTHHHHHHHHSCSTTTTCCCCCCEEC
T ss_pred             CCCCCccCCcCccC--CcEEeC-CCCcCcHHHHHHHHHhCCcCCCCCcchHhhcc
Confidence            35789999999864  356677 99999999999999999999999999865443

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=2.6e-19  Score=95.52  Aligned_cols=48  Identities=21%  Similarity=0.553  Sum_probs=40.7

Q ss_pred             cccccccccccCCCc-cccCCCCccccHHHHHHHHhC-CCccccccccccc
Q 037529           73 ECAVCLDEVESEQPA-RLVPGCNHGFHLQCADSWLSK-HSVCPVCRAKLDS  121 (133)
Q Consensus        73 ~C~ICl~~~~~~~~~-~~lp~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~v~~  121 (133)
                      +|+||+++|..++.. ..++ |||.||.+|+++|+.. +.+||+||+++.+
T Consensus         2 eCpICl~~~~~~~~~~~~~~-CgH~~c~~C~~~w~~~~~~~CP~CR~~~~~   51 (52)
T d1ur6b_           2 ECPLCMEPLEIDDINFFPCT-CGYQICRFCWHRIRTDENGLCPACRKPYPE   51 (52)
T ss_dssp             EETTTTEECCGGGTTCCSSS-SSCCCCHHHHHHHTTTSCCBCTTTCCBCSC
T ss_pred             CCcCCChhhhCCCceEEecC-CCCccchHHHHHHHhhcCCCCCccCCcCCC
Confidence            799999999877654 4566 9999999999999986 4579999998764

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.3e-18  Score=102.55  Aligned_cols=53  Identities=26%  Similarity=0.705  Sum_probs=43.5

Q ss_pred             CCcccccccccccccCC---------------CccccCCCCccccHHHHHHHHhCCCcccccccccccc
Q 037529           69 VMGTECAVCLDEVESEQ---------------PARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSH  122 (133)
Q Consensus        69 ~~~~~C~ICl~~~~~~~---------------~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~  122 (133)
                      ..+++|+||++++.+..               .+..++ |||+||.+||.+||+.+.+||+||++...+
T Consensus        19 ~~~d~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~   86 (88)
T d3dplr1          19 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWEFQ   86 (88)
T ss_dssp             SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCSBCCEE
T ss_pred             CCCCcCEEccchhhCccccccccccccccccCCeEEcc-ccCcccHHHHHHHHHHCCcCCCCCCccccc
Confidence            34577999999886543               245677 999999999999999999999999987644

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.71  E-value=2.9e-18  Score=105.62  Aligned_cols=59  Identities=22%  Similarity=0.523  Sum_probs=44.9

Q ss_pred             CcccccccccccccC---------------CCccccCCCCccccHHHHHHHHhCC-----CccccccccccccccccCCC
Q 037529           70 MGTECAVCLDEVESE---------------QPARLVPGCNHGFHLQCADSWLSKH-----SVCPVCRAKLDSHFFNALES  129 (133)
Q Consensus        70 ~~~~C~ICl~~~~~~---------------~~~~~lp~C~H~fh~~Ci~~wl~~~-----~~CP~Cr~~v~~~~~~~~~~  129 (133)
                      .+.+|+||++++...               ..+..++ |||.||.+||..|+..+     .+||+||+.+.....+.+++
T Consensus        24 ~~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~-CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~~~~~~qP~~  102 (114)
T d1v87a_          24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTGTQPWG  102 (114)
T ss_dssp             CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSSSCTTS
T ss_pred             ccccccchhheecccccccccccccccccccceEECC-CCChhhHHHHHHHHHhcCcCCCCccccccchhccCcCCCCCC
Confidence            357899999998542               2345677 99999999999999743     37999999886665554443

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=2.9e-18  Score=95.53  Aligned_cols=54  Identities=20%  Similarity=0.439  Sum_probs=42.6

Q ss_pred             CcccccccccccccC-C-CccccCCCCccccHHHHHHHHhC-CCcccccccccccccc
Q 037529           70 MGTECAVCLDEVESE-Q-PARLVPGCNHGFHLQCADSWLSK-HSVCPVCRAKLDSHFF  124 (133)
Q Consensus        70 ~~~~C~ICl~~~~~~-~-~~~~lp~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~v~~~~~  124 (133)
                      ++.+|+||++++..+ + .+.+++ |||.||.+||..|+.+ +.+||+||+.+....+
T Consensus         2 dd~~CpIC~~~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~~~~~   58 (65)
T d1g25a_           2 DDQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGAGNCPECGTPLRKSNF   58 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECT-TCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCC
T ss_pred             CCCCCCcCCceeecCCceEEEeCc-cChHhhHHHHHHHhCcCcCCCCCCCcCcccccc
Confidence            467899999986543 2 345567 9999999999999976 4589999998866544

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1.3e-17  Score=96.26  Aligned_cols=49  Identities=24%  Similarity=0.683  Sum_probs=41.7

Q ss_pred             cccccccccccccCCCccccCCCCccccHHHHHHHHhC-CCccccccccccccc
Q 037529           71 GTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSK-HSVCPVCRAKLDSHF  123 (133)
Q Consensus        71 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~v~~~~  123 (133)
                      ...|+||++.+.+   .+++| |||.||.+||..|+.. +.+||+||+.|....
T Consensus        23 ~~~C~IC~~~~~~---~~~~~-CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~~~   72 (79)
T d1fbva4          23 FQLCKICAENDKD---VKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE   72 (79)
T ss_dssp             TTBCTTTSSSBCC---EECSS-SCCEECHHHHHHHHHTTCCSCTTTCCCCCCCC
T ss_pred             CCCCccCCCcCCC---eEEeC-CCCeeeHHHHHHHHHHCcCcCCCCCcCccCCc
Confidence            3579999998765   67888 9999999999999985 568999999987543

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.60  E-value=1e-16  Score=86.49  Aligned_cols=50  Identities=14%  Similarity=0.169  Sum_probs=42.1

Q ss_pred             cccccccccccCCCccccCCCCccccHHHHHHHHhCCCccccccccccccccc
Q 037529           73 ECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSHFFN  125 (133)
Q Consensus        73 ~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~~~~  125 (133)
                      .|+||++.+++   ...++.|||+||.+||.+|++++.+||+||+++......
T Consensus         2 ~C~Ic~~~~~~---Pv~~~~cGh~fc~~cI~~~l~~~~~CP~c~~~l~~~dLi   51 (56)
T d2baya1           2 LCAISGKVPRR---PVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIV   51 (56)
T ss_dssp             CCTTTCSCCSS---EEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCE
T ss_pred             CCccCCchHHh---cCccCCCCCcccHHHHHHHHhhccCCCccCCcCCHHhce
Confidence            59999999876   334434999999999999999999999999998776543

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.59  E-value=2.1e-16  Score=92.15  Aligned_cols=52  Identities=23%  Similarity=0.432  Sum_probs=43.2

Q ss_pred             cccccccccccccCCCccccCCCCccccHHHHHHHHhC-CCcccccccccccccccc
Q 037529           71 GTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSK-HSVCPVCRAKLDSHFFNA  126 (133)
Q Consensus        71 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~v~~~~~~~  126 (133)
                      ...|+||++.+.+   ..+++ |||.||..||.+|++. +..||+||.++.......
T Consensus        23 ~l~C~IC~~~~~~---pv~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~~~l~~   75 (86)
T d1rmda2          23 SISCQICEHILAD---PVETS-CKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLES   75 (86)
T ss_dssp             HTBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBC
T ss_pred             CcCCccCCcchhc---ceecC-CCChhhHHHHHHHHhhCCCcCcccCCCCChhhccC
Confidence            4679999999876   56788 9999999999999974 568999999887655443

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.7e-16  Score=85.43  Aligned_cols=47  Identities=26%  Similarity=0.550  Sum_probs=39.0

Q ss_pred             cccccccccccccCCCccccCCCCccccHHHHHHHHhCCCcccccccccccccc
Q 037529           71 GTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSHFF  124 (133)
Q Consensus        71 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~~~  124 (133)
                      ..+|+||++.+.+   .+.+| |||.||..|++.|   +.+||+||+++.....
T Consensus         6 ~l~C~IC~~~~~~---p~~lp-CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~~   52 (56)
T d1bora_           6 FLRCQQCQAEAKC---PKLLP-CLHTLCSGCLEAS---GMQCPICQAPWPLGAD   52 (56)
T ss_dssp             CSSCSSSCSSCBC---CSCST-TSCCSBTTTCSSS---SSSCSSCCSSSSCCSS
T ss_pred             CCCCcccCcccCC---CEEec-CCCHHhHHHHHcC---CCcCcCCCCcccCCCC
Confidence            4689999999976   45788 9999999999875   6689999998865543

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=2.7e-15  Score=90.56  Aligned_cols=50  Identities=26%  Similarity=0.642  Sum_probs=41.2

Q ss_pred             cccccccccccccCCCccccCCCCccccHHHHHHHHhCC---Ccccccccccccccc
Q 037529           71 GTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKH---SVCPVCRAKLDSHFF  124 (133)
Q Consensus        71 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~---~~CP~Cr~~v~~~~~  124 (133)
                      ...|+||++.|.+   ...++ |||.||..||..|+..+   ..||+||+.+.....
T Consensus        21 ~l~CpIC~~~~~~---pv~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~l   73 (103)
T d1jm7a_          21 ILECPICLELIKE---PVSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL   73 (103)
T ss_dssp             HTSCSSSCCCCSS---CCBCT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTC
T ss_pred             CcCCCccCchhCC---eEEcC-CCCchhhHHHHHHHHHCCCCCcCcCCCCcCChhhC
Confidence            4679999999876   34577 99999999999999764   379999998865443

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=99.52  E-value=4.9e-15  Score=80.90  Aligned_cols=51  Identities=22%  Similarity=0.552  Sum_probs=38.1

Q ss_pred             CCcccccccccccccCCCc--cccCCCCccccHHHHHHHHh--CCCcccccccccc
Q 037529           69 VMGTECAVCLDEVESEQPA--RLVPGCNHGFHLQCADSWLS--KHSVCPVCRAKLD  120 (133)
Q Consensus        69 ~~~~~C~ICl~~~~~~~~~--~~lp~C~H~fh~~Ci~~wl~--~~~~CP~Cr~~v~  120 (133)
                      .+...|.||++++.++...  ... +|+|.||.+|+..|+.  .+.+||+||+++.
T Consensus         4 ed~~~C~IC~~~~~~~~~~~c~c~-~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~   58 (60)
T d1vyxa_           4 EDVPVCWICNEELGNERFRACGCT-GELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             CSCCEETTTTEECSCCCCCSCCCS-SGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCCCccCCccCCCceeEecccC-CCCCEEcHHHHHHHHhhCCCCCCcccCCeee
Confidence            3567899999998754322  112 2469999999999985  4568999998764

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=3.9e-14  Score=84.42  Aligned_cols=48  Identities=23%  Similarity=0.458  Sum_probs=38.5

Q ss_pred             cccccccccccccCCCccccCCCCccccHHHHHHHHhCCCccccccccccccc
Q 037529           71 GTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRAKLDSHF  123 (133)
Q Consensus        71 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~~  123 (133)
                      ...|+||++.|.++  +...+ |||.||.+||..|+.  ..||.||..+....
T Consensus        22 ~l~C~IC~~~~~~p--v~~~~-CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~   69 (97)
T d1jm7b_          22 LLRCSRCTNILREP--VCLGG-CEHIFCSNCVSDCIG--TGCPVCYTPAWIQD   69 (97)
T ss_dssp             TTSCSSSCSCCSSC--BCCCS-SSCCBCTTTGGGGTT--TBCSSSCCBCSCSS
T ss_pred             cCCCccCCchhhcC--ceeCC-CCCchhHHHHHHHHh--ccccccCCcCchhh
Confidence            46899999999764  33346 999999999999974  46999998876543

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.37  E-value=1.7e-13  Score=78.85  Aligned_cols=51  Identities=12%  Similarity=0.139  Sum_probs=42.8

Q ss_pred             CCcccccccccccccCCCccccCCCCccccHHHHHHHHhC-CCccccccccccccc
Q 037529           69 VMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSK-HSVCPVCRAKLDSHF  123 (133)
Q Consensus        69 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~v~~~~  123 (133)
                      .++..|+||++-|.++   ..++ |||.|+..||.+|+.. +..||.||+++....
T Consensus         5 P~~l~CpIc~~l~~dP---v~~~-cGhtfc~~ci~~~l~~~~~~cP~c~~~l~~~~   56 (80)
T d2c2la2           5 PDYLCGKISFELMREP---CITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQ   56 (80)
T ss_dssp             CSTTBCTTTCSBCSSE---EECS-SCCEEETTHHHHHHHHTCSSCTTTCCCCCGGG
T ss_pred             CccccCcCcCchhhhh---cccC-CcCeecHHHHHHHHhcCCccCCCccccccccc
Confidence            4568899999999873   4677 9999999999999975 568999999886543

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.35  E-value=3.2e-13  Score=77.29  Aligned_cols=51  Identities=16%  Similarity=0.331  Sum_probs=43.2

Q ss_pred             CCcccccccccccccCCCccccCCCCccccHHHHHHHHhCC-Cccccccccccccc
Q 037529           69 VMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKH-SVCPVCRAKLDSHF  123 (133)
Q Consensus        69 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~-~~CP~Cr~~v~~~~  123 (133)
                      .++..|+||++-|.++   ++++ |||.|+..||..|+..+ ..||.|+..+....
T Consensus         6 P~~l~CpIc~~~m~dP---V~~~-cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~~~   57 (78)
T d1t1ha_           6 PEYFRCPISLELMKDP---VIVS-TGQTYERSSIQKWLDAGHKTCPKSQETLLHAG   57 (78)
T ss_dssp             SSSSSCTTTSCCCSSE---EEET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCC
T ss_pred             CccCCCcCcCchhhCc---eEcc-CCCcchHHHHHHHHHHCCCCCCcccccCCccc
Confidence            4568899999999873   4677 99999999999999865 57999999887644

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=3.9e-12  Score=75.65  Aligned_cols=54  Identities=9%  Similarity=0.011  Sum_probs=44.6

Q ss_pred             CCCCcccccccccccccCCCccccCCCC-ccccHHHHHHHHhCCCcccccccccccccc
Q 037529           67 ELVMGTECAVCLDEVESEQPARLVPGCN-HGFHLQCADSWLSKHSVCPVCRAKLDSHFF  124 (133)
Q Consensus        67 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~-H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~~~  124 (133)
                      +..++..||||++-|.+   .++++ || |.|++.||..|+..+..||+||+.+.....
T Consensus        18 ~~P~~f~CPI~~~lm~d---PV~~~-~~~~ty~r~~I~~~l~~~~~~P~~~~~l~~~~L   72 (98)
T d1wgma_          18 DACDEFLDPIMSTLMCD---PVVLP-SSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQI   72 (98)
T ss_dssp             SCCTTTBCTTTCSBCSS---EEECT-TTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTS
T ss_pred             CCcHHhCCcCchhHHHH---HHhcc-cccchhhHHHHHHHHHhcCCcccccccccchhh
Confidence            33457899999999998   55677 55 689999999999999999999998876443

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=2.7e-11  Score=71.34  Aligned_cols=46  Identities=24%  Similarity=0.506  Sum_probs=37.2

Q ss_pred             CcccccccccccccCCCccccCCCCccccHHHHHHHHhCC--------Ccccccc
Q 037529           70 MGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKH--------SVCPVCR  116 (133)
Q Consensus        70 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~--------~~CP~Cr  116 (133)
                      ...+|+||++++..++.+..++ |||.||.+|+..|++.+        ..||.|+
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~-C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~   57 (94)
T d1wima_           4 GSSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAA   57 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTT
T ss_pred             CCCcCccCCCcccCCceEEECC-CCCEeCCcCHHHHHHHHHhcCCccccCCcCCC
Confidence            4578999999998777666666 99999999999998631        2699864

>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: variant PHD-like domain
domain: Hypothetical protein KIAA1045
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.32  E-value=0.0032  Score=34.66  Aligned_cols=37  Identities=24%  Similarity=0.406  Sum_probs=27.3

Q ss_pred             CCCCcccccccccccccCCCccccCCCCccccHHHHHHH
Q 037529           67 ELVMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSW  105 (133)
Q Consensus        67 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~w  105 (133)
                      ...++..|.|| +-+..++....-- |+-+||..|+..-
T Consensus        11 ~v~~D~mC~vC-~v~t~~~l~pCRv-CtRv~H~~CL~r~   47 (89)
T d1wila_          11 PVVNDEMCDVC-EVWTAESLFPCRV-CTRVFHDGCLRRM   47 (89)
T ss_dssp             CCCCSCCCTTT-CCCCSSCCSSCSS-SSSCCCHHHHHHH
T ss_pred             CCCcCcccccc-Ccccccceeccee-ecchhhHHHHHHh
Confidence            34567899999 6666655443332 8899999999986

>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Williams-Beuren syndrome transcription factor, WSTF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.98  E-value=0.0012  Score=33.26  Aligned_cols=44  Identities=32%  Similarity=0.687  Sum_probs=30.1

Q ss_pred             cccccccccccCCCccccCCCCccccHHHHHHHHhCCC----ccccccc
Q 037529           73 ECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHS----VCPVCRA  117 (133)
Q Consensus        73 ~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~----~CP~Cr~  117 (133)
                      .|.||-..-..+..+.-- .|+..||.+|++.-+....    .||.||.
T Consensus         2 ~C~vC~~~~~~~~~i~Cd-~C~~~~H~~C~~p~~~~~p~~~W~C~~C~~   49 (51)
T d1f62a_           2 RCKVCRKKGEDDKLILCD-ECNKAFHLFCLRPALYEVPDGEWQCPACQP   49 (51)
T ss_dssp             CCTTTCCSSCCSCCEECT-TTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred             CCcCcCCCCCCCCEEEcC-CCCCCCCCCCCCCCCCcCCCCCEECcCCcC
Confidence            488887664444444333 4889999999988654322    6999974

>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At5g26210
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.91  E-value=0.0011  Score=34.94  Aligned_cols=49  Identities=22%  Similarity=0.441  Sum_probs=34.2

Q ss_pred             CcccccccccccccCCCccccCCCCccccHHHHHHHH---h--CCCcccccccc
Q 037529           70 MGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWL---S--KHSVCPVCRAK  118 (133)
Q Consensus        70 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl---~--~~~~CP~Cr~~  118 (133)
                      +...|.+|...+.+++..+.=..|+.-||..|+..=.   .  .+-.||.|+..
T Consensus         5 ~~~~C~~C~~~~~~~~~~I~Cd~C~~w~H~~C~~~~~~~~~~~~~w~C~~C~~~   58 (64)
T d1we9a_           5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK   58 (64)
T ss_dssp             SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred             CCCcCcCcCCCCCCCCCEEEcCCCCccCCcccCCcChHHCCCCCeEECcCCcCc
Confidence            4568999999887766544333499999999986421   1  23479999864

>d1z60a1 g.49.1.2 (A:328-386) TFIIH p44 subunit cysteine-rich domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: TFIIH p44 subunit cysteine-rich domain
domain: TFIIH p44 subunit cysteine-rich domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.89  E-value=0.0019  Score=33.31  Aligned_cols=45  Identities=20%  Similarity=0.424  Sum_probs=30.6

Q ss_pred             CcccccccccccccCCCccccCCCCccccHHHHHHHHhCCCccccc
Q 037529           70 MGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVC  115 (133)
Q Consensus        70 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~C  115 (133)
                      ....|.-|...+.+... ..-+.|++.|+.+|=.--=+.-.+||-|
T Consensus        14 ~~~~C~gC~~~l~~~~~-y~C~~C~~~FC~dCD~fiHe~lh~CpgC   58 (59)
T d1z60a1          14 GERFCYGCQGELKDQHV-YVCAVCQNVFCVDCDVFVHDSLHSCPGC   58 (59)
T ss_dssp             SCCEETTTTEECTTSEE-ECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred             CCCCccCCCCcCCCCce-EECcCCCCccccccchhhhhhhcCCCCC
Confidence            45779999988875433 3444599999999943321233579987

>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Nuclear corepressor KAP-1 (TIF-1beta)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.99  E-value=0.0079  Score=32.17  Aligned_cols=45  Identities=27%  Similarity=0.535  Sum_probs=30.4

Q ss_pred             cccccccccccccCCCccccCCCCccccHHHHHHHHhCCC----ccccccccc
Q 037529           71 GTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHS----VCPVCRAKL  119 (133)
Q Consensus        71 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~----~CP~Cr~~v  119 (133)
                      ...|.+|.+   .++.+.-- .|...||..|+.+.+....    .||.|+..-
T Consensus         7 c~~C~~C~~---~~~ll~Cd-~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~   55 (70)
T d1fp0a1           7 ATICRVCQK---PGDLVMCN-QCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP   55 (70)
T ss_dssp             SSCCSSSCS---SSCCEECT-TSSCEECTTSSSTTCCCCCSSSCCCCSCCCCC
T ss_pred             CCCCCCCCC---cCEEEECC-CCChhhccccCCCCcCcCCCCCEECcCCcCcC
Confidence            355777754   34544444 4889999999998765432    699997543

>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Mi2-beta (CHD4)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.45  E-value=0.0054  Score=31.90  Aligned_cols=46  Identities=24%  Similarity=0.530  Sum_probs=31.0

Q ss_pred             CCcccccccccccccCCCccccCCCCccccHHHHHHHHhC----CCcccccccc
Q 037529           69 VMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSK----HSVCPVCRAK  118 (133)
Q Consensus        69 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~----~~~CP~Cr~~  118 (133)
                      ..++.|.+|.+.   ++.+.-- .|.-.||..|+..-+..    .-.||.|+.+
T Consensus         7 ~~~~~C~~C~~~---g~lv~Cd-~C~~~~H~~C~~~~~~~~~~~~W~C~~C~~~   56 (61)
T d1mm2a_           7 HHMEFCRVCKDG---GELLCCD-TCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP   56 (61)
T ss_dssp             SSCSSCTTTCCC---SSCBCCS-SSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred             CCcCCCcCCCCC---CeEEEeC-CCCccCchhhcCCCcCcCCCCcEECCCCcCc
Confidence            345679999753   4444444 38889999998765543    2269999764

>d1y02a2 g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger protein Sakura) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Rififylin (FYVE-RING finger protein Sakura)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.37  E-value=0.0082  Score=30.13  Aligned_cols=45  Identities=16%  Similarity=0.495  Sum_probs=27.5

Q ss_pred             cccccccccccCCCccccCCCCccccHHHHHHHHhCCCccccccc
Q 037529           73 ECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSKHSVCPVCRA  117 (133)
Q Consensus        73 ~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~  117 (133)
                      .|.+|-..|.....-..=..||.+|+.+|....-.....|..|.+
T Consensus         2 ~C~~C~~~F~~~~rkhhCr~CG~~fC~~Cs~~~~~~~RvC~~C~~   46 (51)
T d1y02a2           2 SCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQR   46 (51)
T ss_dssp             CCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHH
T ss_pred             CccccCCcccCCccCcccccCCcccCccccCCCCCCCeECHhHhh
Confidence            478888888643311111249999999997665444557888764

>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.19  E-value=0.87  Score=24.21  Aligned_cols=52  Identities=17%  Similarity=0.272  Sum_probs=32.9

Q ss_pred             ccccccccccccCCCccccCCCCccccHHHHHH--H-HhC--CCccccccccccccc
Q 037529           72 TECAVCLDEVESEQPARLVPGCNHGFHLQCADS--W-LSK--HSVCPVCRAKLDSHF  123 (133)
Q Consensus        72 ~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~--w-l~~--~~~CP~Cr~~v~~~~  123 (133)
                      ..+.||...+..++..+.=..|+--||..|+..  . ...  +-.||.|+....+..
T Consensus        12 pv~CiC~~~~~~~~~mI~Cd~C~~W~H~~C~g~~~~~~~~~~~~~C~~C~~~~gp~~   68 (79)
T d1wepa_          12 PVYCLCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFGPSI   68 (79)
T ss_dssp             CCCSTTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSCSCB
T ss_pred             CeEeECCCccCCCCcEEECCCCCCcEeccccCcchhcCCCCCEEECccCcCCcCCcc
Confidence            445599987765543333334888899999842  2 222  358999997654433

>d1dvpa2 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=87.90  E-value=0.18  Score=26.75  Aligned_cols=36  Identities=22%  Similarity=0.352  Sum_probs=24.0

Q ss_pred             CcccccccccccccCCCccccCCCCccccHHHHHHH
Q 037529           70 MGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSW  105 (133)
Q Consensus        70 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~w  105 (133)
                      ++..|.+|-.+|.--..-..=..||++|+.+|....
T Consensus        12 ~~~~C~~C~~~F~~~~rrhhCr~CG~~~C~~C~~~~   47 (72)
T d1dvpa2          12 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ   47 (72)
T ss_dssp             CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred             cCCccccCCCcccCccccccccccCCeeChhhhCCc
Confidence            346799999998753211111239999999996543

>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 22
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.49  E-value=0.064  Score=29.57  Aligned_cols=51  Identities=18%  Similarity=0.472  Sum_probs=32.1

Q ss_pred             cccccccccccccC-CCccccCCCCccccHHHHHHHH-----hC---CCccccccccccc
Q 037529           71 GTECAVCLDEVESE-QPARLVPGCNHGFHLQCADSWL-----SK---HSVCPVCRAKLDS  121 (133)
Q Consensus        71 ~~~C~ICl~~~~~~-~~~~~lp~C~H~fh~~Ci~~wl-----~~---~~~CP~Cr~~v~~  121 (133)
                      ...|.||....... ..+..=..|+..||..|+.+.+     ..   .-.||.|......
T Consensus        16 ~~~C~iC~~~~~~~~~~~v~Cd~C~~~~H~~C~~p~~~~~~~~~~~~~W~C~~C~~~~~~   75 (88)
T d1weva_          16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKR   75 (88)
T ss_dssp             CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCC
T ss_pred             cCCccCCCCccCCCCCeEEEcCCCCCccccccCCCcccccccccCCCeEECcccCchHhh
Confidence            45699998754432 2333323488999999976432     22   3379999875443

>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Death associated transcription factor 1, Datf1 (DIO-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.84  E-value=0.54  Score=24.72  Aligned_cols=45  Identities=20%  Similarity=0.458  Sum_probs=28.5

Q ss_pred             ccccccccccccCCCccccCCCCccccHHHHH----H--H---HhCCCcccccccc
Q 037529           72 TECAVCLDEVESEQPARLVPGCNHGFHLQCAD----S--W---LSKHSVCPVCRAK  118 (133)
Q Consensus        72 ~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~----~--w---l~~~~~CP~Cr~~  118 (133)
                      ..| ||-.....+..+.-- .|.=-||..|+.    .  .   ...+-.||.|+..
T Consensus        17 ~~C-iC~~~~~~~~mi~Cd-~C~~w~H~~Cvg~~~~~~~~~~~~~~~w~C~~C~~~   70 (76)
T d1wema_          17 LYC-ICRQPHNNRFMICCD-RCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL   70 (76)
T ss_dssp             CCS-TTCCCCCSSCEEECS-SSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred             CEE-ECCCccCCCeEEEEC-CCCCcCCccccCCCcccccccCCCCCcEECCCCcCc
Confidence            457 898776554444433 377789999982    1  1   1234689999754

>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Eea1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.51  E-value=0.29  Score=25.22  Aligned_cols=36  Identities=14%  Similarity=0.279  Sum_probs=23.6

Q ss_pred             CcccccccccccccCCCccccCCCCccccHHHHHHH
Q 037529           70 MGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSW  105 (133)
Q Consensus        70 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~w  105 (133)
                      +...|.+|-..|..-..-.-=..||++|+.+|....
T Consensus         7 ~~~~C~~C~~~F~~~~rrHHCR~CG~v~C~~Cs~~~   42 (64)
T d1joca1           7 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN   42 (64)
T ss_dssp             GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred             cCCcCcCcCCcccCCccccchhhhCCeecccccCCc
Confidence            346799999998753211111139999999996543

>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD Inhibitor of growth protein 2, Ing2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.83  E-value=0.22  Score=26.34  Aligned_cols=43  Identities=28%  Similarity=0.571  Sum_probs=24.8

Q ss_pred             ccccccccccccCCCcccc-CCCCc-cccHHHHHHHHhC----CCcccccccc
Q 037529           72 TECAVCLDEVESEQPARLV-PGCNH-GFHLQCADSWLSK----HSVCPVCRAK  118 (133)
Q Consensus        72 ~~C~ICl~~~~~~~~~~~l-p~C~H-~fh~~Ci~~wl~~----~~~CP~Cr~~  118 (133)
                      .-| ||.+... ++.+... .+|-+ -||..|+.  +..    +-.||.|+..
T Consensus        17 ~~C-iC~~~~~-~~~i~c~~~~C~~~wfH~~Cvg--l~~~p~~~w~C~~C~~~   65 (71)
T d1wesa_          17 TYC-LCNQVSY-GEMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRGD   65 (71)
T ss_dssp             CCS-TTCCCCC-SSEECCSCTTCSCCCEETTTTT--CSSCCSSCCCCTTTSSC
T ss_pred             CEE-EeCCCCC-CCEEEEECCCCCCcCccCccCC--CCcCCCCcEECcCCccc
Confidence            345 9987633 3333331 12444 59999984  222    2379999753

>d2co8a2 g.39.1.3 (A:8-43) Nedd9 interacting protein with calponin homology, NICAL (MICAL1) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Nedd9 interacting protein with calponin homology, NICAL (MICAL1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.67  E-value=0.35  Score=21.97  Aligned_cols=30  Identities=27%  Similarity=0.412  Sum_probs=20.0

Q ss_pred             CCcccccccccccccCCCccccCCCCccccHHH
Q 037529           69 VMGTECAVCLDEVESEQPARLVPGCNHGFHLQC  101 (133)
Q Consensus        69 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~C  101 (133)
                      ...+.|.+|-...-.-+.+.   .=|++||++|
T Consensus         6 g~~~~C~~C~K~VY~~Erl~---a~g~~yHk~C   35 (36)
T d2co8a2           6 GAGDLCALCGEHLYVLERLC---VNGHFFHRSC   35 (36)
T ss_dssp             CSSCBCSSSCCBCCTTTBCC---BTTBCCBTTT
T ss_pred             CCCCcccccCCEEeeeeEEE---ecCcEecccc
Confidence            34578999987754433332   2678999988

>d1vfya_ g.50.1.1 (A:) vps27p protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: vps27p protein
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.83  E-value=0.35  Score=25.10  Aligned_cols=35  Identities=11%  Similarity=0.281  Sum_probs=23.0

Q ss_pred             cccccccccccccCCCccccCCCCccccHHHHHHH
Q 037529           71 GTECAVCLDEVESEQPARLVPGCNHGFHLQCADSW  105 (133)
Q Consensus        71 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~w  105 (133)
                      ++.|.+|-..|.--..-.-=..||.+|+.+|....
T Consensus         5 ~~~C~~C~~~F~~~~rkhhCr~CG~~fC~~Cs~~~   39 (67)
T d1vfya_           5 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNS   39 (67)
T ss_dssp             CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSCEE
T ss_pred             CcccccCCCcccCcccccccccCCCEecccccCCc
Confidence            35799999998643211111139999999996543

>d1rutx3 g.39.1.3 (X:83-113) LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: LIM only 4 (Lmo4)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.28  E-value=0.17  Score=22.26  Aligned_cols=28  Identities=18%  Similarity=0.517  Sum_probs=22.7

Q ss_pred             ccccccccccccCCCccccCCCCccccHHH
Q 037529           72 TECAVCLDEVESEQPARLVPGCNHGFHLQC  101 (133)
Q Consensus        72 ~~C~ICl~~~~~~~~~~~lp~C~H~fh~~C  101 (133)
                      ..|+-|...+...|.++.-  =+++||-.|
T Consensus         3 g~Ca~C~~~I~~~e~VmRA--~~~VyHl~C   30 (31)
T d1rutx3           3 GACSACGQSIPASELVMRA--QGNVYHLKC   30 (31)
T ss_dssp             EECTTTCCEECTTSEEEEE--TTEEECGGG
T ss_pred             cccccccCcCChhHhheec--ccceeeecc
Confidence            3599999999998877764  478999887

>d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein 19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Zinc finger FYVE domain containing protein 19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.12  E-value=0.06  Score=29.94  Aligned_cols=55  Identities=18%  Similarity=0.268  Sum_probs=35.8

Q ss_pred             CCcccccccccccccCCCccccCCCCccccHHHHHHHHhC-------CCccccccccccccc
Q 037529           69 VMGTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSK-------HSVCPVCRAKLDSHF  123 (133)
Q Consensus        69 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~-------~~~CP~Cr~~v~~~~  123 (133)
                      ..+..|.+|-.+|..-..-..-..||-+|+.+|....+..       ...|..|...+....
T Consensus         7 ~~~s~C~~C~~~Fs~~~rrhhCr~CG~vfC~~Cs~~~~~lp~~~~~~~RVC~~C~~~l~~~~   68 (88)
T d1wfka_           7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILTRGS   68 (88)
T ss_dssp             CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHHHCC
T ss_pred             cccCcCcccCchhccccccccccccChhhChHHhCCccccCCCCCCCCeECHHHHHHHHhcc
Confidence            3457899999999753322222249999999998765321       126999976665433

>d2cs3a1 g.44.1.3 (A:8-87) Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: Protein c14orf4 (KIAA1865)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.81  E-value=1.8  Score=22.57  Aligned_cols=38  Identities=16%  Similarity=0.374  Sum_probs=27.8

Q ss_pred             cccccccccccccCCCccccCCCCccccHHHHHHHHhC
Q 037529           71 GTECAVCLDEVESEQPARLVPGCNHGFHLQCADSWLSK  108 (133)
Q Consensus        71 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~  108 (133)
                      ...|.+|.|.+++.--+..-..=+|-||--|-...++.
T Consensus         8 ~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sik~   45 (80)
T d2cs3a1           8 PLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA   45 (80)
T ss_dssp             SCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred             ceeeeeehhhhcCCceEeCCCCcCCceeccccHHHHHh
Confidence            36799999998876544322123699999999998863