Citrus Sinensis ID: 037534

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------11
Protein Sequence
SESSSTGNEHRRRSSLESLFCYDKPIPEERIEKSISVSLSEKVIGDNPRCIECKAKGVVLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNIMCAECGGRGHCSP
Secondary Structure (PSIPRED)
cccccccHHHHHcccccEEEEEcccccHHHHccccccccHHHHccccccccccccccEEEEEEcccccEEEEEEEEEccEEEEEEcccccccccEEcccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHcccccHHHHEcccccccHHHccccccccHHHHccccccccccccccEEEEEEcccccccEHHHHHHcccEEEEEEEcccccccccEcccccccccccc
Coil and Loop (DISEMBL)
sessstgnehrrrssleslfcydkpipeeriEKSISVSLsekvigdnprcieckakGVVLCatcsgsglyvDSILESQgvivkvpclgcggtgnimcaecggrghcsp
Flexible Loop (DISEMBL)
sessstgnehrrrssleslfcydkpipeerieksisvslsekvigdnprciecKAKGVVLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGnimcaecggrghcsp
Low Complexity Region (SEG)
SESSSTGNEHRRRSSLESLFCYDKPIPEERIEKSISVSLSEKVIGDNPRCIECKAKGVVLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNIMCAECGGRGHCSP
Disordered region (IsUnstruct)
******************LFCYDKPI*******SISVSLSEKVIGDNPRCIECKAKGVVLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNIMCAECGG******
Disordered Region (DISOPRED)
***************LESLFCYDKPIPE****************G*NPRCIECKAKGVVLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNIMCAECGGRG****
Disordered Region (DISEMBL)
***************LESLFCYDKPIPEERIEKSISVSLSEKVIGDNPRCIECKAKGVVLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNIMCAECGGRGHCSP
Disordered Region (DISPRO)
*************SSLESLFCYDKPIPEERIEKSISVSLSEKVIGDNPRCIECKAKGVVLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNIMCAECGGR**C**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
SESSSTGNEHRRRSSLESLFCYDKPIPEERIEKSISVSLSEKVIGDNPRCIECKAKGVVLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNIMCAECGGRGHCSP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	108
225439213	160	PREDICTED: uncharacterized protein LOC10	0.925	0.625	0.86	3e-43
224123900	111	predicted protein [Populus trichocarpa]	0.972	0.945	0.8	5e-42
449453818	161	PREDICTED: uncharacterized protein LOC10	0.944	0.633	0.803	8e-42
224144856	173	predicted protein [Populus trichocarpa]	0.944	0.589	0.803	2e-41
351722043	172	uncharacterized protein LOC100306113 [Gl	1.0	0.627	0.740	6e-40
357508859	168	hypothetical protein MTR_7g086700 [Medic	0.907	0.583	0.775	2e-38
356571783	167	PREDICTED: uncharacterized protein LOC10	1.0	0.646	0.722	2e-38
388513217	158	unknown [Lotus japonicus]	0.953	0.651	0.747	3e-38
388503698	168	unknown [Medicago truncatula]	0.907	0.583	0.765	6e-38
147768117	245	hypothetical protein VITISV_004566 [Viti	0.805	0.355	0.839	2e-34

>gi|225439213|ref|XP_002276082.1| PREDICTED: uncharacterized protein LOC100241525 [Vitis vinifera] gi|296085904|emb|CBI31228.3| unnamed protein product [Vitis vinifera]

 Score =  178 bits (452), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 86/100 (86%), Positives = 93/100 (93%)

Query: 6   TGNEHRRRSSLESLFCYDKPIPEERIEKSISVSLSEKVIGDNPRCIECKAKGVVLCATCS 65
            G+ HRRRSSLESLFCYDKPIPEE IEK I +SL+EKVIGDNPRCI+C+AKG VLCATCS
Sbjct: 57  VGDVHRRRSSLESLFCYDKPIPEEIIEKPIGLSLAEKVIGDNPRCIDCQAKGAVLCATCS 116

Query: 66  GSGLYVDSILESQGVIVKVPCLGCGGTGNIMCAECGGRGH 105
           GSGLYVDSILESQG+IVKV CLGCGGTGNIMC+ECGGRGH
Sbjct: 117 GSGLYVDSILESQGIIVKVRCLGCGGTGNIMCSECGGRGH 156

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123900|ref|XP_002319192.1| predicted protein [Populus trichocarpa] gi|222857568|gb|EEE95115.1| predicted protein [Populus trichocarpa]

 Score =  174 bits (442), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 84/105 (80%), Positives = 94/105 (89%)

Query: 1   SESSSTGNEHRRRSSLESLFCYDKPIPEERIEKSISVSLSEKVIGDNPRCIECKAKGVVL 60
            ESSS G+ HRRRSSLES F YDKPIPEERIE+ + +SL+EKVIGDNPRC +C+AKG VL
Sbjct: 3   QESSSVGDVHRRRSSLESTFRYDKPIPEERIEEPVGISLAEKVIGDNPRCTDCQAKGAVL 62

Query: 61  CATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNIMCAECGGRGH 105
           C TC+GSGLYVDSILESQG+IVKV CLGCGGTGNIMC+ECGGRGH
Sbjct: 63  CTTCAGSGLYVDSILESQGIIVKVRCLGCGGTGNIMCSECGGRGH 107

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453818|ref|XP_004144653.1| PREDICTED: uncharacterized protein LOC101220837 [Cucumis sativus]

 Score =  174 bits (440), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 82/102 (80%), Positives = 91/102 (89%)

Query: 4   SSTGNEHRRRSSLESLFCYDKPIPEERIEKSISVSLSEKVIGDNPRCIECKAKGVVLCAT 63
           SS  + HRRRSS ESLFCYDK IPEERIE  I +SL+EK+IG+NPRC +C+AKG VLCAT
Sbjct: 56  SSAADVHRRRSSFESLFCYDKAIPEERIETPIGISLAEKMIGNNPRCTDCQAKGAVLCAT 115

Query: 64  CSGSGLYVDSILESQGVIVKVPCLGCGGTGNIMCAECGGRGH 105
           CSGSGLYVDSILESQG+IVKV CLGCGGTGNIMC+ECGGRGH
Sbjct: 116 CSGSGLYVDSILESQGIIVKVRCLGCGGTGNIMCSECGGRGH 157

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144856|ref|XP_002325440.1| predicted protein [Populus trichocarpa] gi|222862315|gb|EEE99821.1| predicted protein [Populus trichocarpa]

 Score =  172 bits (437), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 82/102 (80%), Positives = 91/102 (89%)

Query: 7   GNEHRRRSSLESLFCYDKPIPEERIEKSISVSLSEKVIGDNPRCIECKAKGVVLCATCSG 66
           G+ HRRRSSLESLFCYDKPIPEERIE+ + VSL+ KVIGDNPRC +C+AKG VLC TCSG
Sbjct: 71  GDVHRRRSSLESLFCYDKPIPEERIEEPVGVSLAAKVIGDNPRCTDCQAKGAVLCTTCSG 130

Query: 67  SGLYVDSILESQGVIVKVPCLGCGGTGNIMCAECGGRGHCSP 108
           SGLYVDSI+ESQG+IVKV CLGCGGTGNIMC+ECGG GH  P
Sbjct: 131 SGLYVDSIMESQGIIVKVRCLGCGGTGNIMCSECGGLGHLGP 172

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722043|ref|NP_001237742.1| uncharacterized protein LOC100306113 [Glycine max] gi|255627587|gb|ACU14138.1| unknown [Glycine max]

 Score =  167 bits (424), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 80/108 (74%), Positives = 92/108 (85%)

Query: 1   SESSSTGNEHRRRSSLESLFCYDKPIPEERIEKSISVSLSEKVIGDNPRCIECKAKGVVL 60
           S SS   +E++RRS+LESLFCYDK IPEE IEK + +SL EK IG+N RC +C+AKG VL
Sbjct: 64  SVSSLKADENKRRSNLESLFCYDKAIPEEIIEKPVGLSLEEKAIGNNTRCTDCQAKGAVL 123

Query: 61  CATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNIMCAECGGRGHCSP 108
           CATC+GSGLYVDSI+ESQG+IVKV CLGCGGTGNIMCAECGGRGH  P
Sbjct: 124 CATCAGSGLYVDSIMESQGIIVKVRCLGCGGTGNIMCAECGGRGHLGP 171

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357508859|ref|XP_003624718.1| hypothetical protein MTR_7g086700 [Medicago truncatula] gi|355499733|gb|AES80936.1| hypothetical protein MTR_7g086700 [Medicago truncatula]

 Score =  162 bits (410), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 76/98 (77%), Positives = 87/98 (88%)

Query: 8   NEHRRRSSLESLFCYDKPIPEERIEKSISVSLSEKVIGDNPRCIECKAKGVVLCATCSGS 67
           +E+RRRS+LESLFCYDK IPEE IEK + +SL+EK IG+N RC +C AKG VLCATC+GS
Sbjct: 67  DENRRRSNLESLFCYDKAIPEEIIEKPVGLSLAEKAIGNNTRCNDCHAKGAVLCATCAGS 126

Query: 68  GLYVDSILESQGVIVKVPCLGCGGTGNIMCAECGGRGH 105
           GLYVDSI+ESQG+IVKV CLGCGGTGNIMC ECGGRGH
Sbjct: 127 GLYVDSIMESQGIIVKVRCLGCGGTGNIMCTECGGRGH 164

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356571783|ref|XP_003554052.1| PREDICTED: uncharacterized protein LOC100812164 [Glycine max]

 Score =  162 bits (410), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 78/108 (72%), Positives = 91/108 (84%)

Query: 1   SESSSTGNEHRRRSSLESLFCYDKPIPEERIEKSISVSLSEKVIGDNPRCIECKAKGVVL 60
           S SS   ++++ RS+LESLFCYDK IPEE IEK + +SL EK IG+N RC +C+AKG VL
Sbjct: 59  SVSSLKTDKNKGRSNLESLFCYDKAIPEEIIEKPVGLSLEEKAIGNNSRCTDCQAKGAVL 118

Query: 61  CATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNIMCAECGGRGHCSP 108
           CATC+GSGLYVDSI+ESQG+IVKV CLGCGGTGNIMCAECGGRGH  P
Sbjct: 119 CATCAGSGLYVDSIMESQGIIVKVRCLGCGGTGNIMCAECGGRGHLGP 166

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388513217|gb|AFK44670.1| unknown [Lotus japonicus]

 Score =  162 bits (409), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 77/103 (74%), Positives = 89/103 (86%)

Query: 3   SSSTGNEHRRRSSLESLFCYDKPIPEERIEKSISVSLSEKVIGDNPRCIECKAKGVVLCA 62
           SS   ++++RRS+LESLFCYDK IPEE IEK + +SL+EK IG+N RC +C AKG VLCA
Sbjct: 52  SSLKADDNKRRSNLESLFCYDKAIPEEIIEKPVGLSLAEKAIGNNHRCTDCHAKGAVLCA 111

Query: 63  TCSGSGLYVDSILESQGVIVKVPCLGCGGTGNIMCAECGGRGH 105
           TC+GSGLYVDSILESQG+IVKV CLGCGGTGNIMC ECGGRGH
Sbjct: 112 TCAGSGLYVDSILESQGIIVKVRCLGCGGTGNIMCTECGGRGH 154

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388503698|gb|AFK39915.1| unknown [Medicago truncatula]

 Score =  161 bits (407), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 75/98 (76%), Positives = 86/98 (87%)

Query: 8   NEHRRRSSLESLFCYDKPIPEERIEKSISVSLSEKVIGDNPRCIECKAKGVVLCATCSGS 67
           +E+RRRS+LESLFCYDK IPEE IEK + +SL+EK IG+N RC +C AKG  LCATC+GS
Sbjct: 67  DENRRRSNLESLFCYDKAIPEEIIEKPVGLSLAEKAIGNNTRCNDCHAKGAALCATCAGS 126

Query: 68  GLYVDSILESQGVIVKVPCLGCGGTGNIMCAECGGRGH 105
           GLYVDSI+ESQG+IVKV CLGCGGTGNIMC ECGGRGH
Sbjct: 127 GLYVDSIMESQGIIVKVRCLGCGGTGNIMCTECGGRGH 164

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147768117|emb|CAN64910.1| hypothetical protein VITISV_004566 [Vitis vinifera]

 Score =  149 bits (377), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 73/87 (83%), Positives = 80/87 (91%)

Query: 1   SESSSTGNEHRRRSSLESLFCYDKPIPEERIEKSISVSLSEKVIGDNPRCIECKAKGVVL 60
           +ESSS G+ HRRRSSLESLFCYDKPIPEE IEK I +SL+EKVIGDNPRCI+C+AKG VL
Sbjct: 117 AESSSVGDVHRRRSSLESLFCYDKPIPEEIIEKPIGLSLAEKVIGDNPRCIDCQAKGAVL 176

Query: 61  CATCSGSGLYVDSILESQGVIVKVPCL 87
           CATCSGSGLYVDSILESQG+IVKV CL
Sbjct: 177 CATCSGSGLYVDSILESQGIIVKVRCL 203

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	108
TAIR|locus:2175966	154	AT5G17840 [Arabidopsis thalian	0.972	0.681	0.695	4.3e-38
TAIR|locus:2047426	144	AT2G24860 [Arabidopsis thalian	0.657	0.493	0.294	9e-06
TAIR|locus:2079132	136	AT3G47650 [Arabidopsis thalian	0.694	0.551	0.273	8.1e-05
TAIR|locus:4010713752	135	ENA "ENHANCER OF ATNSI ACTIVIT	0.712	0.570	0.325	0.00035
TAIR|locus:2152845	315	AT5G06130 [Arabidopsis thalian	0.509	0.174	0.349	0.00035
TAIR|locus:2005585	154	LQY1 "LOW QUANTUM YIELD OF PHO	0.481	0.337	0.339	0.00048
TAIR|locus:2097164	159	AT3G44020 "AT3G44020" [Arabido	0.592	0.402	0.333	0.00072
TAIR|locus:2044812	186	EDA3 "embryo sac development a	0.509	0.295	0.321	0.00091

TAIR|locus:2175966 AT5G17840 [Arabidopsis thaliana (taxid:3702)]

 Score = 408 (148.7 bits), Expect = 4.3e-38, P = 4.3e-38
 Identities = 73/105 (69%), Positives = 89/105 (84%)

Query:     1 SESSSTGNEHRRRSSLESLFCYDKPIPEERIEKSISVSLSEKVIGDNPRCIECKAKGVVL 60
             +ES    + HR+RSSLES+FCYDKPIPEE IE+ + +S+SE+ IGDN RC  C+AKG +L
Sbjct:    47 AESCLKRDVHRQRSSLESMFCYDKPIPEEIIEEPVGLSMSEREIGDNQRCTCCEAKGALL 106

Query:    61 CATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNIMCAECGGRGH 105
             C+TCSG+GLYVDSI+ESQG+IVKV CLGCGG+GNIMC  CGGRGH
Sbjct:   107 CSTCSGTGLYVDSIMESQGIIVKVRCLGCGGSGNIMCKLCGGRGH 151

GO:0009507 "chloroplast" evidence=ISM

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

TAIR|locus:2047426 AT2G24860 [Arabidopsis thaliana (taxid:3702)]

 Score = 103 (41.3 bits), Expect = 9.0e-06, P = 9.0e-06
 Identities = 23/78 (29%), Positives = 41/78 (52%)

Query:    29 ERIEKSISVSLSEKVIGDNPRCIECKAKGVVLCATCSGSGLYV--DSILESQGVIVKVPC 86
             +R++++  +S     +G    C  C +KG V C  C+G+G ++  D++L  Q       C
Sbjct:    59 KRMDQAWIISQQPSPVG----CSSCNSKGHVECKWCAGTGFFILGDNML-CQVPSRNTSC 113

Query:    87 LGCGGTGNIMCAECGGRG 104
             + C G G+  C++C G G
Sbjct:   114 VICSGQGSASCSDCKGTG 131

GO:0005576 "extracellular region" evidence=ISM

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

TAIR|locus:2079132 AT3G47650 [Arabidopsis thaliana (taxid:3702)]

 Score = 94 (38.1 bits), Expect = 8.1e-05, P = 8.1e-05
 Identities = 23/84 (27%), Positives = 36/84 (42%)

Query:    29 ERIEKSISVSLSEKVIGDNPR--------CIECKAKGVVLCATCSGSGLYVDSILESQGV 80
             E ++ S S S   K   +NP+        C  C+ +G V C+ C G G+ +      Q  
Sbjct:    43 ELLQTSRSQSFEVKAANNNPQGTKPNSLVCANCEGEGCVACSQCKGGGVNLIDHFNGQFK 102

Query:    81 IVKVPCLGCGGTGNIMCAECGGRG 104
                + C  C G   ++C +C G G
Sbjct:   103 AGAL-CWLCRGKKEVLCGDCNGAG 125

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0009773 "photosynthetic electron transport in photosystem I" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

TAIR|locus:4010713752 ENA "ENHANCER OF ATNSI ACTIVITY" [Arabidopsis thaliana (taxid:3702)]

 Score = 88 (36.0 bits), Expect = 0.00035, P = 0.00035
 Identities = 27/83 (32%), Positives = 34/83 (40%)

Query:    24 KPIPEERIEKSISVSLSEKVIGDNPRCIECKAKGVVLCATCSGSGLY--VDSILESQGVI 81
             KP    R +      +  K  G   RC+ C   G V C  C G G    VD  +  +G  
Sbjct:    37 KPSWIVRTQSGAKTCMKSKAKG---RCVICHGSGRVDCFNCCGKGRTNCVDVEMLPRGEW 93

Query:    82 VKVPCLGCGGTGNIMCAECGGRG 104
              K  C  CGG+G   C+ C G G
Sbjct:    94 PKW-CKSCGGSGLSDCSRCLGTG 115

GO:0005634 "nucleus" evidence=ISM

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

TAIR|locus:2152845 AT5G06130 [Arabidopsis thaliana (taxid:3702)]

 Score = 95 (38.5 bits), Expect = 0.00035, P = 0.00035
 Identities = 22/63 (34%), Positives = 30/63 (47%)

Query:    46 DNPRCIECKAKGVVLCATCSGSG--LYVDSILESQGV--IVKVP----CLGCGGTGNIMC 97
             +  RC  C   G + CA CS SG  L +D I   +    +++V     CL C G G +MC
Sbjct:   234 EKKRCKYCLGTGYLPCARCSASGVCLSIDPITRPRATNQLMQVATTKRCLNCSGAGKVMC 293

Query:    98 AEC 100
               C
Sbjct:   294 PTC 296

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2005585 LQY1 "LOW QUANTUM YIELD OF PHOTOSYSTEM II 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 87 (35.7 bits), Expect = 0.00048, P = 0.00048
 Identities = 19/56 (33%), Positives = 25/56 (44%)

Query:    50 CIECKAKGVVLCATCSGSGLYVDSILESQGVIVKVP-CLGCGGTGNIMCAECGGRG 104
             C  C   G   C  C GSG   +  +E  G   +V  C+ C G G++ C  C G G
Sbjct:    87 CFPCNGTGAQKCRLCVGSG---NVTVELGGGEKEVSNCINCDGAGSLTCTTCQGSG 139

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0003756 "protein disulfide isomerase activity" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0010206 "photosystem II repair" evidence=IMP

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2097164 AT3G44020 "AT3G44020" [Arabidopsis thaliana (taxid:3702)]

 Score = 86 (35.3 bits), Expect = 0.00072, P = 0.00072
 Identities = 24/72 (33%), Positives = 33/72 (45%)

Query:    34 SISVSLSEKVIGDNPRCIECKAKGVVLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTG 93
             +I++SL     GD   C  C   G   C  C    + V+S     G+   V C  C G+G
Sbjct:    92 AIALSLFLGFKGDPVPCERCGGNGGTKCVFCLEGKMKVES-----GM---VDCKVCKGSG 143

Query:    94 NIMCAECGGRGH 105
              I C +CGG G+
Sbjct:   144 LIFCKKCGGSGY 155

GO:0009543 "chloroplast thylakoid lumen" evidence=ISS

TAIR|locus:2044812 EDA3 "embryo sac development arrest 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 87 (35.7 bits), Expect = 0.00091, P = 0.00091
 Identities = 18/56 (32%), Positives = 26/56 (46%)

Query:    50 CIECKAKGVVLCATCSGSGLYVD-SILESQGVIVKVPCLGCGGTGNIMCAECGGRG 104
             C  C+  G VLC  C G+G +   +   ++ V     C  C G G ++C  C G G
Sbjct:   102 CRNCQGSGAVLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTG 157


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.135   0.419    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      108       108   0.00091  102 3  11 22  0.48    30
                                                     29  0.40    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  541 (58 KB)
  Total size of DFA:  119 KB (2078 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.87u 0.14s 13.01t   Elapsed:  00:00:01
  Total cpu time:  12.87u 0.14s 13.01t   Elapsed:  00:00:01
  Start:  Tue May 21 00:01:46 2013   End:  Tue May 21 00:01:47 2013

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009561 "megagametogenesis" evidence=IMP

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010304 "PSII associated light-harvesting complex II catabolic process" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	108
PRK14291	382	PRK14291, PRK14291, chaperone protein DnaJ; Provis	4e-07
TIGR02349	354	TIGR02349, DnaJ_bact, chaperone protein DnaJ	6e-05
COG0484	371	COG0484, DnaJ, DnaJ-class molecular chaperone with	1e-04
PRK14282	369	PRK14282, PRK14282, chaperone protein DnaJ; Provis	1e-04
PRK14279	392	PRK14279, PRK14279, chaperone protein DnaJ; Provis	3e-04
PRK14301	373	PRK14301, PRK14301, chaperone protein DnaJ; Provis	7e-04
PRK14297	380	PRK14297, PRK14297, chaperone protein DnaJ; Provis	0.001
PRK14277	386	PRK14277, PRK14277, chaperone protein DnaJ; Provis	0.001
PRK14290	365	PRK14290, PRK14290, chaperone protein DnaJ; Provis	0.003
PRK14283	378	PRK14283, PRK14283, chaperone protein DnaJ; Provis	0.003

>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional

 Score = 46.3 bits (110), Expect = 4e-07
 Identities = 35/111 (31%), Positives = 51/111 (45%), Gaps = 21/111 (18%)

Query: 11  RRRSSLESLFCYDKPIPEERIEKSISVSLSEKVIGDN-----PRCIECKA---------K 56
           RRR++ E    Y +P+  E I +++ +SL E   G       PR + C+A          
Sbjct: 112 RRRATRERRKTYQRPVKGEDIYQTVEISLEEAYTGTTVSLEVPRYVPCEACGGTGYDPGS 171

Query: 57  GVVLCATCSGSGLYVDSILESQGVI-VKVPCLGCGGTGNIM--CAECGGRG 104
           G  +C TC GSG     I +  G   +   C  CGG G +   C++C GRG
Sbjct: 172 GEKVCPTCGGSG----EIYQRGGFFRISQTCPTCGGEGVLREPCSKCNGRG 218

Length = 382

>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ

 Score = 39.9 bits (94), Expect = 6e-05
 Identities = 25/104 (24%), Positives = 37/104 (35%), Gaps = 26/104 (25%)

Query: 24  KPIPEERIEKSISVSLSEKVIG-----DNPRCIECKA---------KGVVLCATCSGSGL 69
            P   E +   + ++  E V G     + PR   C+               C TC G+G 
Sbjct: 112 GPRRGEDLRYDLELTFEEAVFGVEKEIEIPRKESCETCHGTGAKPGTDPKTCPTCGGTG- 170

Query: 70  YVDSILESQGVI-----VKVPCLGCGGTGNIM---CAECGGRGH 105
               +   QG        +  C  CGG G I+   C+ C G+G 
Sbjct: 171 ---QVRRQQGTPFGFFQQQQTCPTCGGEGKIIKEPCSTCKGKGR 211

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family. Length = 354

>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

 Score = 38.8 bits (91), Expect = 1e-04
 Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 18/92 (19%)

Query: 31  IEKSISVSLSEKVIGDN-----PR---CIECKAKG------VVLCATCSGSGLYVDSILE 76
           +  ++ ++L E V G        R   C  C   G         C TC+GSG  V ++  
Sbjct: 118 LRYNLEITLEEAVFGVKKEIRVTRSVTCSTCHGSGAKPGTDPKTCPTCNGSG-QVRTVQR 176

Query: 77  SQGVIVKVPCLGCGGTGNIM---CAECGGRGH 105
           +     +  C  C GTG I+   C +C G+G 
Sbjct: 177 TGFFSFQQTCPTCNGTGKIIKDPCGKCKGKGR 208

Length = 371

>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional

 Score = 39.0 bits (91), Expect = 1e-04
 Identities = 32/94 (34%), Positives = 38/94 (40%), Gaps = 18/94 (19%)

Query: 29  ERIEKSISVSLSEKVIGDN--------PRCIECKAKGV------VLCATCSGSGLYVDSI 74
           E I   I V+LS+ + G            C  C   GV      V C  C G+G   +  
Sbjct: 126 EDIRYEIEVTLSDLINGAEIPVEYDRYETCPHCGGTGVEPGSGYVTCPKCHGTGRIREER 185

Query: 75  LESQGVIV-KVPCLGCGGTGNI---MCAECGGRG 104
               GV V +  C  CGGTG I    C ECGG G
Sbjct: 186 RSFFGVFVSERTCERCGGTGKIPGEYCHECGGSG 219

Length = 369

>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional

 Score = 38.2 bits (89), Expect = 3e-04
 Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 15/83 (18%)

Query: 32  EKSISVSLSEKVIGDNPRCIECKAKGV------VLCATCSGSGLYVDSILESQGVI-VKV 84
           E +  V++  ++    P C  C   G        +C TC+GSG+    I  +QG      
Sbjct: 159 EAAKGVTMPLRLTSPAP-CTTCHGSGARPGTSPKVCPTCNGSGV----ISRNQGAFGFSE 213

Query: 85  PCLGCGGTGNIM---CAECGGRG 104
           PC  C GTG+I+   C EC G G
Sbjct: 214 PCTDCRGTGSIIEDPCEECKGTG 236

Length = 392

>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional

 Score = 37.0 bits (86), Expect = 7e-04
 Identities = 31/111 (27%), Positives = 43/111 (38%), Gaps = 17/111 (15%)

Query: 4   SSTGNEHRRRSSLESLFCYDKPIPEERIEKSISVSLSEKVIGDNPRCIECKAKGVV---- 59
           S  G+    R    S   Y+  +   +  K   V+L    I  N  C +C   G      
Sbjct: 104 SGGGSRRGPRPQAGSDLRYNLTVSFRQAAKGDEVTLR---IPKNVTCDDCGGSGAAPGTS 160

Query: 60  --LCATCSGSGLYVDSILESQGVI-VKVPCLGCGGTGNIM---CAECGGRG 104
              C  C GSG     + +SQG   + VPC  C G G ++   C +C G G
Sbjct: 161 PETCRHCGGSG----QVRQSQGFFQIAVPCPVCRGEGRVITHPCPKCKGSG 207

Length = 373

>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional

 Score = 36.7 bits (85), Expect = 0.001
 Identities = 24/85 (28%), Positives = 33/85 (38%), Gaps = 17/85 (20%)

Query: 31  IEKSISVSLSEKVIGDNPRCIECKAKGV------VLCATCSGSGLYVDSILESQGVIVKV 84
           +EK ISV+ +E        C  C   G         C  C G+G          G  V  
Sbjct: 139 VEKEISVTRNEN-------CETCNGTGAKPGTSPKTCDKCGGTGQIRVQRNTPLGSFVST 191

Query: 85  P-CLGCGGTGNIM---CAECGGRGH 105
             C  CGG+G ++   C +C G+G 
Sbjct: 192 TTCDKCGGSGKVIEDPCNKCHGKGK 216

Length = 380

>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional

 Score = 36.3 bits (84), Expect = 0.001
 Identities = 30/98 (30%), Positives = 36/98 (36%), Gaps = 26/98 (26%)

Query: 17  ESLFCYDKPIPEERIEKSISVSLSEKVIGDNPRCIECKAKGV------VLCATCSGSGLY 70
           E+ F  +K I  ER EK                C  CK  G       V C  C G+G  
Sbjct: 141 EAAFGTEKEIEVERFEK----------------CDVCKGSGAKPGSKPVTCPVCHGTGQV 184

Query: 71  VDSILESQGVIVKV-PCLGCGGTGNIM---CAECGGRG 104
                   G IV +  C  C G G I+   C +CGG G
Sbjct: 185 RTRQNTPFGRIVNIRTCDRCHGEGKIITDPCNKCGGTG 222

Length = 386

>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional

 Score = 35.3 bits (81), Expect = 0.003
 Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 13/69 (18%)

Query: 47  NPRCIECKAKG-----VVLCATCSGSGLYVDSILESQG---VIVKVPCLGCGGTGNI--- 95
           N  C +C   G     ++ C TC G+G     I+  QG   ++    C  CGG G I   
Sbjct: 149 NAMCPDCSGTGAKNGKLITCPTCHGTGQ--QRIVRGQGFFRMVTVTTCRTCGGRGRIPEE 206

Query: 96  MCAECGGRG 104
            C  C G G
Sbjct: 207 KCPRCNGTG 215

Length = 365

>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional

 Score = 35.2 bits (81), Expect = 0.003
 Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 13/82 (15%)

Query: 31  IEKSISVSLSEKVIGDNPRCIECKAK---GVVLCATCSGSGLY--VDSILESQGVIVKVP 85
           +EK I V  ++K     P C   +A+    V  C TC G+G    V + +  Q + V   
Sbjct: 137 VEKDIKVRHTKKC----PVCNGSRAEPGSEVKTCPTCGGTGQVKQVRNTILGQMMNV-TT 191

Query: 86  CLGCGGTGNIM---CAECGGRG 104
           C  C G G I+   C+ C G+G
Sbjct: 192 CPDCQGEGKIVEKPCSNCHGKG 213

Length = 378

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	108
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	99.85
PRK14282	369	chaperone protein DnaJ; Provisional	99.78
PRK14298	377	chaperone protein DnaJ; Provisional	99.78
PRK14286	372	chaperone protein DnaJ; Provisional	99.77
PRK14276	380	chaperone protein DnaJ; Provisional	99.77
PRK14280	376	chaperone protein DnaJ; Provisional	99.76
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	99.76
PRK14278	378	chaperone protein DnaJ; Provisional	99.76
PRK14285	365	chaperone protein DnaJ; Provisional	99.76
PRK14296	372	chaperone protein DnaJ; Provisional	99.75
PRK14279	392	chaperone protein DnaJ; Provisional	99.75
PRK14297	380	chaperone protein DnaJ; Provisional	99.74
PRK14277	386	chaperone protein DnaJ; Provisional	99.74
PRK10767	371	chaperone protein DnaJ; Provisional	99.74
PRK14294	366	chaperone protein DnaJ; Provisional	99.73
PRK14284	391	chaperone protein DnaJ; Provisional	99.73
PRK14295	389	chaperone protein DnaJ; Provisional	99.73
PRK14301	373	chaperone protein DnaJ; Provisional	99.73
PRK14287	371	chaperone protein DnaJ; Provisional	99.73
PRK14288	369	chaperone protein DnaJ; Provisional	99.72
PTZ00037	421	DnaJ_C chaperone protein; Provisional	99.71
PRK14281	397	chaperone protein DnaJ; Provisional	99.71
PRK14300	372	chaperone protein DnaJ; Provisional	99.7
PRK14290	365	chaperone protein DnaJ; Provisional	99.7
PRK14293	374	chaperone protein DnaJ; Provisional	99.68
PRK14289	386	chaperone protein DnaJ; Provisional	99.68
PRK14292	371	chaperone protein DnaJ; Provisional	99.68
PRK14283	378	chaperone protein DnaJ; Provisional	99.66
PRK14291	382	chaperone protein DnaJ; Provisional	99.63
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	99.59
PF00684	66	DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR0	99.4
PLN03165	111	chaperone protein dnaJ-related; Provisional	99.33
KOG2813	406	consensus Predicted molecular chaperone, contains	98.2
KOG0715	288	consensus Molecular chaperone (DnaJ superfamily) [	98.18
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	98.16
COG1107	715	Archaea-specific RecJ-like exonuclease, contains D	98.15
PF00684	66	DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR0	97.92
KOG2813	406	consensus Predicted molecular chaperone, contains	97.82
PRK14278	378	chaperone protein DnaJ; Provisional	97.45
COG1107	715	Archaea-specific RecJ-like exonuclease, contains D	97.43
PRK14296	372	chaperone protein DnaJ; Provisional	97.42
PRK14288	369	chaperone protein DnaJ; Provisional	97.41
PRK14298	377	chaperone protein DnaJ; Provisional	97.4
PRK14279	392	chaperone protein DnaJ; Provisional	97.39
PRK14282	369	chaperone protein DnaJ; Provisional	97.39
PRK14301	373	chaperone protein DnaJ; Provisional	97.37
PRK14300	372	chaperone protein DnaJ; Provisional	97.36
PRK14286	372	chaperone protein DnaJ; Provisional	97.29
PRK14285	365	chaperone protein DnaJ; Provisional	97.26
PRK14294	366	chaperone protein DnaJ; Provisional	97.26
PRK14280	376	chaperone protein DnaJ; Provisional	97.26
PRK14295	389	chaperone protein DnaJ; Provisional	97.25
PRK14284	391	chaperone protein DnaJ; Provisional	97.23
PRK14289	386	chaperone protein DnaJ; Provisional	97.22
PRK14276	380	chaperone protein DnaJ; Provisional	97.21
PLN03165	111	chaperone protein dnaJ-related; Provisional	97.19
PRK10767	371	chaperone protein DnaJ; Provisional	97.15
PRK14277	386	chaperone protein DnaJ; Provisional	97.15
PRK14290	365	chaperone protein DnaJ; Provisional	97.14
PRK14291	382	chaperone protein DnaJ; Provisional	97.13
PRK14281	397	chaperone protein DnaJ; Provisional	97.11
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	97.1
TIGR02642	186	phage_xxxx uncharacterized phage protein. This unc	97.09
PRK14297	380	chaperone protein DnaJ; Provisional	97.07
PRK14293	374	chaperone protein DnaJ; Provisional	96.93
PTZ00037	421	DnaJ_C chaperone protein; Provisional	96.92
PRK14287	371	chaperone protein DnaJ; Provisional	96.91
PRK14283	378	chaperone protein DnaJ; Provisional	96.84
KOG2824	281	consensus Glutaredoxin-related protein [Posttransl	96.82
PRK14292	371	chaperone protein DnaJ; Provisional	96.7
TIGR02642	186	phage_xxxx uncharacterized phage protein. This unc	96.69
cd03031	147	GRX_GRX_like Glutaredoxin (GRX) family, GRX-like d	96.06
PRK10266	306	curved DNA-binding protein CbpA; Provisional	94.89
PRK14299	291	chaperone protein DnaJ; Provisional	94.8
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	92.07
cd03031	147	GRX_GRX_like Glutaredoxin (GRX) family, GRX-like d	90.44
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	88.34
KOG2824	281	consensus Glutaredoxin-related protein [Posttransl	86.61
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	83.56
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	80.58
PRK00635	1809	excinuclease ABC subunit A; Provisional	80.3

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.85  E-value=2e-21  Score=153.06  Aligned_cols=95  Identities=28%  Similarity=0.672  Sum_probs=81.7

Q ss_pred             cccchhHhhhCC--------CCCCCCCceEEEEEecchhhccCc--------ccccCCccCcCc------ccCCCCcCCc
Q 037534           11 RRRSSLESLFCY--------DKPIPEERIEKSISVSLSEKVIGD--------NPRCIECKAKGV------VLCATCSGSG   68 (108)
Q Consensus        11 ~~~~~f~~~f~~--------~~~~rg~di~~~l~i~l~e~~~G~--------~~~C~~C~G~G~------~~C~~C~G~G   68 (108)
                      +..++|++||+.        ..+++|+|+.+.|+|+|+|+|+|.        ...|+.|+|+|+      .+|++|+|+|
T Consensus        90 ~~~DIF~~~FgGg~~~~~~~~~~~rG~Dl~~~l~isleEa~~G~~~~i~~~~~~~C~~C~GsGak~gt~~~tC~tC~G~G  169 (371)
T COG0484          90 DFGDIFEDFFGGGGGGRRRPNRPRRGADLRYNLEITLEEAVFGVKKEIRVTRSVTCSTCHGSGAKPGTDPKTCPTCNGSG  169 (371)
T ss_pred             CHHHHHHHhhcCCCcccCCCCCcccCCceEEEEEeEhhhhccCceeeEecceeeECCcCCCCCCCCCCCCCcCCCCCCcC
Confidence            688999999941        235689999999999999999998        789999999987      7999999999


Q ss_pred             eEeeeEEeecCcEE-EeeCCCCCCcceEE---CCCCCCceEeC
Q 037534           69 LYVDSILESQGVIV-KVPCLGCGGTGNIM---CAECGGRGHCS  107 (108)
Q Consensus        69 ~~~~~~~~~~G~~~-~~~C~~C~G~G~~~---C~~C~G~G~~~  107 (108)
                      .+.  +.+..|+++ +++|+.|+|+|+++   |+.|+|.|++.
T Consensus       170 ~v~--~~~~~g~~~~~~~C~~C~G~G~~i~~pC~~C~G~G~v~  210 (371)
T COG0484         170 QVR--TVQRTGFFSFQQTCPTCNGTGKIIKDPCGKCKGKGRVK  210 (371)
T ss_pred             eEE--EEEeeeEEEEEEECCCCccceeECCCCCCCCCCCCeEe
Confidence            962  222227766 99999999999999   99999999974

>PRK14282 chaperone protein DnaJ; Provisional

Probab=99.78  E-value=1.2e-18  Score=137.26  Aligned_cols=94  Identities=35%  Similarity=0.673  Sum_probs=77.7

Q ss_pred             chhHhhhCC--------CCCCCCCceEEEEEecchhhccCc--------ccccCCccCcCc------ccCCCCcCCceEe
Q 037534           14 SSLESLFCY--------DKPIPEERIEKSISVSLSEKVIGD--------NPRCIECKAKGV------VLCATCSGSGLYV   71 (108)
Q Consensus        14 ~~f~~~f~~--------~~~~rg~di~~~l~i~l~e~~~G~--------~~~C~~C~G~G~------~~C~~C~G~G~~~   71 (108)
                      ++|++||+.        ..+++++|+.++|.|+|+|+|+|+        .+.|+.|+|+|.      ..|+.|+|+|.++
T Consensus       103 d~f~~~fgg~~~~~~~~~~~~~g~di~~~l~~slee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~  182 (369)
T PRK14282        103 DIFDIFFGERRTQEEQREYARRGEDIRYEIEVTLSDLINGAEIPVEYDRYETCPHCGGTGVEPGSGYVTCPKCHGTGRIR  182 (369)
T ss_pred             hhhhHhhcccCCcccccCCCCCCCCeEEEEEEEHHHhcCCeEEEEEeeecccCCCCCccCCCCCCCCcCCCCCCCcCEEE
Confidence            678888862        124578999999999999999998        689999999997      6899999999974


Q ss_pred             eeEEeecCcEE-EeeCCCCCCcceEE---CCCCCCceEeC
Q 037534           72 DSILESQGVIV-KVPCLGCGGTGNIM---CAECGGRGHCS  107 (108)
Q Consensus        72 ~~~~~~~G~~~-~~~C~~C~G~G~~~---C~~C~G~G~~~  107 (108)
                      ...+...|+++ +.+|+.|.|+|+++   |..|+|+|++.
T Consensus       183 ~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~  222 (369)
T PRK14282        183 EERRSFFGVFVSERTCERCGGTGKIPGEYCHECGGSGRIR  222 (369)
T ss_pred             EEEEccCcceEEEEECCCCCCcceeCCCCCCCCCCceeEE
Confidence            22222337776 88999999999988   99999999864

>PRK14298 chaperone protein DnaJ; Provisional

Probab=99.78  E-value=8.6e-19  Score=138.59  Aligned_cols=96  Identities=26%  Similarity=0.575  Sum_probs=78.6

Q ss_pred             ccchhHhhhCC------CCCCCCCceEEEEEecchhhccCc--------ccccCCccCcCc------ccCCCCcCCceEe
Q 037534           12 RRSSLESLFCY------DKPIPEERIEKSISVSLSEKVIGD--------NPRCIECKAKGV------VLCATCSGSGLYV   71 (108)
Q Consensus        12 ~~~~f~~~f~~------~~~~rg~di~~~l~i~l~e~~~G~--------~~~C~~C~G~G~------~~C~~C~G~G~~~   71 (108)
                      +.++|++||+.      ..++++.|+.++|.|+|+|+|+|+        .+.|+.|+|+|.      ..|+.|+|+|+++
T Consensus        92 ~~d~f~~~Fgg~~~~~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~  171 (377)
T PRK14298         92 FGDIFEMFFGGGGRRGRMGPRRGSDLRYDLYITLEEAAFGVRKDIDVPRAERCSTCSGTGAKPGTSPKRCPTCGGTGQVT  171 (377)
T ss_pred             chhhhHhhhcCCCccCCCCCCCCCCEEEEEEEEHHHhhCCeEEEEEEEeeccCCCCCCCcccCCCCCCcCCCCCCccEEE
Confidence            34678999973      234689999999999999999998        689999999997      6899999999974


Q ss_pred             eeEEeecCcEE-EeeCCCCCCcceEE---CCCCCCceEeC
Q 037534           72 DSILESQGVIV-KVPCLGCGGTGNIM---CAECGGRGHCS  107 (108)
Q Consensus        72 ~~~~~~~G~~~-~~~C~~C~G~G~~~---C~~C~G~G~~~  107 (108)
                      ...+.+.|+++ +.+|+.|.|+|+++   |+.|+|+|++.
T Consensus       172 ~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~  211 (377)
T PRK14298        172 TTRSTPLGQFVTTTTCSTCHGRGQVIESPCPVCSGTGKVR  211 (377)
T ss_pred             EEEecCceeEEEEEeCCCCCCCCcccCCCCCCCCCccEEE
Confidence            21121225555 89999999999988   99999999874

>PRK14286 chaperone protein DnaJ; Provisional

Probab=99.77  E-value=1.3e-18  Score=137.40  Aligned_cols=92  Identities=27%  Similarity=0.666  Sum_probs=78.6

Q ss_pred             ccchhHhhhCCC-----------CCCCCCceEEEEEecchhhccCc--------ccccCCccCcCc------ccCCCCcC
Q 037534           12 RRSSLESLFCYD-----------KPIPEERIEKSISVSLSEKVIGD--------NPRCIECKAKGV------VLCATCSG   66 (108)
Q Consensus        12 ~~~~f~~~f~~~-----------~~~rg~di~~~l~i~l~e~~~G~--------~~~C~~C~G~G~------~~C~~C~G   66 (108)
                      +.++|++||+..           ++.++.|+.++|.|+|+|+|+|+        .+.|+.|+|+|.      ..|+.|+|
T Consensus        96 ~~d~f~~ffgg~~~~~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G  175 (372)
T PRK14286         96 FGDIFGDFFGGGRGGGSGGGRRSGPQRGSDLRYNLEVSLEDAALGREYKIEIPRLESCVDCNGSGASKGSSPTTCPDCGG  175 (372)
T ss_pred             hhhHHHHhhCCCccCCCcccccCCCCCCCCeeEEEEEEHHHHhCCeeEEEEeeccccCCCCcCCCcCCCCCCccCCCCcC
Confidence            447788898621           23578999999999999999998        689999999997      68999999


Q ss_pred             CceEeeeEEeecCcEE-EeeCCCCCCcceEE---CCCCCCceEeC
Q 037534           67 SGLYVDSILESQGVIV-KVPCLGCGGTGNIM---CAECGGRGHCS  107 (108)
Q Consensus        67 ~G~~~~~~~~~~G~~~-~~~C~~C~G~G~~~---C~~C~G~G~~~  107 (108)
                      +|++    ...+|+++ +++|+.|.|+|+++   |+.|+|+|++.
T Consensus       176 ~G~v----~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~  216 (372)
T PRK14286        176 SGQI----RRTQGFFSVATTCPTCRGKGTVISNPCKTCGGQGLQE  216 (372)
T ss_pred             eEEE----EEEeceEEEEEeCCCCCceeeEecccCCCCCCCcEEe
Confidence            9996    33458776 88999999999998   99999999874

>PRK14276 chaperone protein DnaJ; Provisional

Probab=99.77  E-value=1.7e-18  Score=136.87  Aligned_cols=96  Identities=27%  Similarity=0.641  Sum_probs=78.5

Q ss_pred             ccchhHhhhCC-------CCCCCCCceEEEEEecchhhccCc--------ccccCCccCcCc------ccCCCCcCCceE
Q 037534           12 RRSSLESLFCY-------DKPIPEERIEKSISVSLSEKVIGD--------NPRCIECKAKGV------VLCATCSGSGLY   70 (108)
Q Consensus        12 ~~~~f~~~f~~-------~~~~rg~di~~~l~i~l~e~~~G~--------~~~C~~C~G~G~------~~C~~C~G~G~~   70 (108)
                      +.++|++||+.       ..++++.|+.++|.|+|+|+|+|+        .+.|+.|+|+|.      ..|+.|+|+|.+
T Consensus        96 ~~d~f~~~fgg~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~  175 (380)
T PRK14276         96 FEDIFSSFFGGGGARRNPNAPRQGDDLQYRVNLDFEEAIFGKEKEVSYNREATCHTCNGSGAKPGTSPVTCGKCHGSGVI  175 (380)
T ss_pred             hhhHHHHHhCccccccCcCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeccccCCCCcCcccCCCCCCccCCCCCCeeEE
Confidence            45678999962       124578999999999999999998        689999999996      689999999997


Q ss_pred             eeeEEeecCcEE-EeeCCCCCCcceEE---CCCCCCceEeC
Q 037534           71 VDSILESQGVIV-KVPCLGCGGTGNIM---CAECGGRGHCS  107 (108)
Q Consensus        71 ~~~~~~~~G~~~-~~~C~~C~G~G~~~---C~~C~G~G~~~  107 (108)
                      ....+...|+++ +.+|+.|.|+|+++   |+.|+|+|++.
T Consensus       176 ~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~  216 (380)
T PRK14276        176 TVDTQTPLGMMRRQVTCDVCHGTGKEIKEPCQTCHGTGHEK  216 (380)
T ss_pred             EEEEecCCceEEEEEECCCCCCCCccccCCCCCCCCceEEE
Confidence            311112237766 88999999999988   99999999864

>PRK14280 chaperone protein DnaJ; Provisional

Probab=99.76  E-value=2.6e-18  Score=135.75  Aligned_cols=96  Identities=26%  Similarity=0.603  Sum_probs=78.0

Q ss_pred             ccchhHhhhCC-------CCCCCCCceEEEEEecchhhccCc--------ccccCCccCcCc------ccCCCCcCCceE
Q 037534           12 RRSSLESLFCY-------DKPIPEERIEKSISVSLSEKVIGD--------NPRCIECKAKGV------VLCATCSGSGLY   70 (108)
Q Consensus        12 ~~~~f~~~f~~-------~~~~rg~di~~~l~i~l~e~~~G~--------~~~C~~C~G~G~------~~C~~C~G~G~~   70 (108)
                      +.++|++||+.       ..++++.|+.++|.|+|+|+|+|+        .+.|+.|+|+|.      ..|+.|+|+|++
T Consensus        93 ~~d~f~~~fgg~~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~  172 (376)
T PRK14280         93 FEDIFSSFFGGGGRRRDPNAPRQGADLQYTMTLTFEEAVFGKEKEIEIPKEETCDTCHGSGAKPGTSKETCSHCGGSGQV  172 (376)
T ss_pred             chhhHHHHhCCccccCcccccccccCEEEEEEEEHHHHhCCceeEEEEeeeccCCCCCCcccCCCCCCccCCCCCCEEEE
Confidence            44678999962       123578999999999999999998        689999999996      689999999997


Q ss_pred             eeeEEeecCcEE-EeeCCCCCCcceEE---CCCCCCceEeC
Q 037534           71 VDSILESQGVIV-KVPCLGCGGTGNIM---CAECGGRGHCS  107 (108)
Q Consensus        71 ~~~~~~~~G~~~-~~~C~~C~G~G~~~---C~~C~G~G~~~  107 (108)
                      +...+...|+++ +.+|+.|.|+|+++   |+.|+|+|++.
T Consensus       173 ~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~  213 (376)
T PRK14280        173 SVEQNTPFGRVVNRQTCPHCNGTGQEIKEKCPTCHGKGKVR  213 (376)
T ss_pred             EEEeecCCceEEEEEEcCCCCCCCceecCCCCCCCCceEEE
Confidence            311112236666 88999999999988   99999999874

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=99.76  E-value=3.3e-18  Score=133.84  Aligned_cols=96  Identities=26%  Similarity=0.597  Sum_probs=78.5

Q ss_pred             ccchhHhhhCC---------CCCCCCCceEEEEEecchhhccCc--------ccccCCccCcCc------ccCCCCcCCc
Q 037534           12 RRSSLESLFCY---------DKPIPEERIEKSISVSLSEKVIGD--------NPRCIECKAKGV------VLCATCSGSG   68 (108)
Q Consensus        12 ~~~~f~~~f~~---------~~~~rg~di~~~l~i~l~e~~~G~--------~~~C~~C~G~G~------~~C~~C~G~G   68 (108)
                      ..++|++||+.         ..+++++|+.++|.|+|+|+|+|.        .+.|+.|+|+|.      ..|+.|+|+|
T Consensus        91 ~~~~f~~~fg~~~g~~~~~~~~~~~~~d~~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G  170 (354)
T TIGR02349        91 FGDIFGDFFGGGGGSGRRRRSGPRRGEDLRYDLELTFEEAVFGVEKEIEIPRKESCETCHGTGAKPGTDPKTCPTCGGTG  170 (354)
T ss_pred             hhhhHHHHhccCcccCccccCCCCCCCCeEEEEEEEHHHHhCCeeEEEEeecCCcCCCCCCCCCCCCCCCccCCCCCCee
Confidence            45678888872         124578999999999999999998        689999999996      6899999999


Q ss_pred             eEeeeEEeecCcEE-EeeCCCCCCcceEE---CCCCCCceEeC
Q 037534           69 LYVDSILESQGVIV-KVPCLGCGGTGNIM---CAECGGRGHCS  107 (108)
Q Consensus        69 ~~~~~~~~~~G~~~-~~~C~~C~G~G~~~---C~~C~G~G~~~  107 (108)
                      .++.......|+++ +.+|+.|.|+|+++   |+.|+|+|++.
T Consensus       171 ~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~  213 (354)
T TIGR02349       171 QVRRQQGTPFGFFQQQQTCPTCGGEGKIIKEPCSTCKGKGRVK  213 (354)
T ss_pred             EEEEEEeccCCceEEEEecCCCCCcceecCCCCCCCCCCcEec
Confidence            97421122236766 88999999999988   99999999874

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14278 chaperone protein DnaJ; Provisional

Probab=99.76  E-value=2.9e-18  Score=135.58  Aligned_cols=96  Identities=28%  Similarity=0.566  Sum_probs=78.0

Q ss_pred             ccchhHhhhCCC--------CCCCCCceEEEEEecchhhccCc--------ccccCCccCcCc------ccCCCCcCCce
Q 037534           12 RRSSLESLFCYD--------KPIPEERIEKSISVSLSEKVIGD--------NPRCIECKAKGV------VLCATCSGSGL   69 (108)
Q Consensus        12 ~~~~f~~~f~~~--------~~~rg~di~~~l~i~l~e~~~G~--------~~~C~~C~G~G~------~~C~~C~G~G~   69 (108)
                      ..++|++||+..        .++++.|+.++|.|+|+|+|+|+        .+.|+.|+|+|.      ..|+.|+|+|+
T Consensus        88 ~~d~f~~ffgg~g~~~~~~~~~~~g~d~~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~  167 (378)
T PRK14278         88 LGDVFEAFFGGGAASRGPRGRVRPGSDSLLRMRLDLEECATGVTKQVTVDTAVLCDRCHGKGTAGDSKPVTCDTCGGRGE  167 (378)
T ss_pred             hhHHHHHHhCCCCCCCCCccCCCCCCCeEEEEEEEHHHhcCCeEEEEEEEeeccCCCCcCccCCCCCCceecCCccCceE
Confidence            346799999731        23478999999999999999998        689999999997      68999999999


Q ss_pred             EeeeEEeecCcEE-EeeCCCCCCcceEE---CCCCCCceEeC
Q 037534           70 YVDSILESQGVIV-KVPCLGCGGTGNIM---CAECGGRGHCS  107 (108)
Q Consensus        70 ~~~~~~~~~G~~~-~~~C~~C~G~G~~~---C~~C~G~G~~~  107 (108)
                      ++...+...|+++ +.+|+.|+|+|+++   |+.|+|+|++.
T Consensus       168 ~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~  209 (378)
T PRK14278        168 VQTVQRSFLGQVMTSRPCPTCRGVGEVIPDPCHECAGDGRVR  209 (378)
T ss_pred             EEEEEeccceeEEEEEECCCCCccceeeCCCCCCCCCceeEe
Confidence            7311111236665 88999999999998   99999999874

>PRK14285 chaperone protein DnaJ; Provisional

Probab=99.76  E-value=2.2e-18  Score=135.72  Aligned_cols=92  Identities=28%  Similarity=0.610  Sum_probs=78.8

Q ss_pred             ccchhHhhhCCC-------CCCCCCceEEEEEecchhhccCc--------ccccCCccCcCc------ccCCCCcCCceE
Q 037534           12 RRSSLESLFCYD-------KPIPEERIEKSISVSLSEKVIGD--------NPRCIECKAKGV------VLCATCSGSGLY   70 (108)
Q Consensus        12 ~~~~f~~~f~~~-------~~~rg~di~~~l~i~l~e~~~G~--------~~~C~~C~G~G~------~~C~~C~G~G~~   70 (108)
                      +.++|++||+..       .+.++.|+.++|.|+|+|+|+|.        .+.|+.|+|+|.      ..|+.|+|+|++
T Consensus        96 ~~d~f~~~fgg~~~~~~~~~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~  175 (365)
T PRK14285         96 FGDIFDSFFTGNRGQDKNRKHEKGQDLTYQIEISLEDAYLGYKNNINITRNMLCESCLGKKSEKGTSPSICNMCNGSGRV  175 (365)
T ss_pred             HHHHHHHhhcCCcCCCCCcCCCCCCCEEEEEEEEHHHhhCCeEEEEEeeecccCCCCCCcccCCCCCCccCCCccCceeE
Confidence            446788898731       24579999999999999999998        689999999996      689999999996


Q ss_pred             eeeEEeecCcEE-EeeCCCCCCcceEE---CCCCCCceEeC
Q 037534           71 VDSILESQGVIV-KVPCLGCGGTGNIM---CAECGGRGHCS  107 (108)
Q Consensus        71 ~~~~~~~~G~~~-~~~C~~C~G~G~~~---C~~C~G~G~~~  107 (108)
                          ....|+++ +.+|+.|.|+|+++   |..|+|+|++.
T Consensus       176 ----~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~  212 (365)
T PRK14285        176 ----MQGGGFFRVTTTCPKCYGNGKIISNPCKSCKGKGSLK  212 (365)
T ss_pred             ----EecCceeEEeeecCCCCCcccccCCCCCCCCCCCEEe
Confidence                34558877 89999999999998   99999999874

>PRK14296 chaperone protein DnaJ; Provisional

Probab=99.75  E-value=4.7e-18  Score=134.19  Aligned_cols=93  Identities=23%  Similarity=0.612  Sum_probs=76.7

Q ss_pred             cchhHhhhCC-----CCCCCCCceEEEEEecchhhccCc--------ccccCCccCcCc------ccCCCCcCCceEeee
Q 037534           13 RSSLESLFCY-----DKPIPEERIEKSISVSLSEKVIGD--------NPRCIECKAKGV------VLCATCSGSGLYVDS   73 (108)
Q Consensus        13 ~~~f~~~f~~-----~~~~rg~di~~~l~i~l~e~~~G~--------~~~C~~C~G~G~------~~C~~C~G~G~~~~~   73 (108)
                      .++|++||+.     .++.++.|+.++|.|+|+|+|+|+        .+.|+.|+|+|.      .+|+.|+|+|.++  
T Consensus       102 ~d~f~~~fggg~~~~~~~~~g~di~~~l~ltlee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~--  179 (372)
T PRK14296        102 TNIFSDFFGSNKSDYQRSTKGQSVSLDIYLTFKELLFGVDKIIELDLLTNCSKCFGSGAESNSDIHICNNCHGTGEVL--  179 (372)
T ss_pred             hhhhhhhcCCCccCCCCcCCCCCeEEEeeccHHHhhCCeeEEEEEeeeeccCCCCCCccCCCCCCccCCCCCCCceEE--
Confidence            4668888863     124579999999999999999998        689999999997      6799999999974  


Q ss_pred             EEeecCcE--E-EeeCCCCCCcceEE---CCCCCCceEeC
Q 037534           74 ILESQGVI--V-KVPCLGCGGTGNIM---CAECGGRGHCS  107 (108)
Q Consensus        74 ~~~~~G~~--~-~~~C~~C~G~G~~~---C~~C~G~G~~~  107 (108)
                      ..+..|++  + +.+|+.|.|+|+++   |+.|+|+|++.
T Consensus       180 ~~~~~g~~~~q~~~~C~~C~G~G~~~~~~C~~C~G~g~v~  219 (372)
T PRK14296        180 VQKNMGFFQFQQSAKCNVCNGAGKIIKNKCKNCKGKGKYL  219 (372)
T ss_pred             EEEeccceEEEEEecCCCcCCcceeecccccCCCCceEEE
Confidence            23334653  3 78999999999998   99999999863

>PRK14279 chaperone protein DnaJ; Provisional

Probab=99.75  E-value=4.9e-18  Score=134.88  Aligned_cols=90  Identities=32%  Similarity=0.725  Sum_probs=75.3

Q ss_pred             chhHhhhCCC-------CCCCCCceEEEEEecchhhccCc--------ccccCCccCcCc------ccCCCCcCCceEee
Q 037534           14 SSLESLFCYD-------KPIPEERIEKSISVSLSEKVIGD--------NPRCIECKAKGV------VLCATCSGSGLYVD   72 (108)
Q Consensus        14 ~~f~~~f~~~-------~~~rg~di~~~l~i~l~e~~~G~--------~~~C~~C~G~G~------~~C~~C~G~G~~~~   72 (108)
                      ++|.+||+..       .++++.|+.++|.|+|+|+|+|+        .+.|+.|+|+|.      .+|+.|+|+|++  
T Consensus       125 d~f~~~fg~~~~~~~~~~~~~g~di~~~l~ltLee~~~G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~--  202 (392)
T PRK14279        125 DLFGGLFNRGGGSARPSRPRRGNDLETETTLDFVEAAKGVTMPLRLTSPAPCTTCHGSGARPGTSPKVCPTCNGSGVI--  202 (392)
T ss_pred             hhhhhhhcCCCcccccCCCCCCCCeEEEEEEEHHHHhCCeEEEEeeeccccCCCCccccccCCCCCCCCCCCcceEEE--
Confidence            4456666521       24578999999999999999998        689999999997      689999999996  


Q ss_pred             eEEeecCcEE-EeeCCCCCCcceEE---CCCCCCceEeC
Q 037534           73 SILESQGVIV-KVPCLGCGGTGNIM---CAECGGRGHCS  107 (108)
Q Consensus        73 ~~~~~~G~~~-~~~C~~C~G~G~~~---C~~C~G~G~~~  107 (108)
                        ...+|+++ +++|+.|.|+|+++   |..|+|+|++.
T Consensus       203 --~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~  239 (392)
T PRK14279        203 --SRNQGAFGFSEPCTDCRGTGSIIEDPCEECKGTGVTT  239 (392)
T ss_pred             --EEEecceEEEEecCCCCceeEEeCCcCCCCCCCeEEE
Confidence              33447666 89999999999998   99999999874

>PRK14297 chaperone protein DnaJ; Provisional

Probab=99.74  E-value=6.8e-18  Score=133.45  Aligned_cols=96  Identities=29%  Similarity=0.645  Sum_probs=77.6

Q ss_pred             ccchhHhhhCC---------CCCCCCCceEEEEEecchhhccCc--------ccccCCccCcCc------ccCCCCcCCc
Q 037534           12 RRSSLESLFCY---------DKPIPEERIEKSISVSLSEKVIGD--------NPRCIECKAKGV------VLCATCSGSG   68 (108)
Q Consensus        12 ~~~~f~~~f~~---------~~~~rg~di~~~l~i~l~e~~~G~--------~~~C~~C~G~G~------~~C~~C~G~G   68 (108)
                      +.++|++||+.         ..+.+++|++++|.|+|+|+|+|+        .+.|+.|+|+|.      ..|+.|+|+|
T Consensus        96 ~~d~f~~~fgg~~g~~~~~~~~~~kg~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G  175 (380)
T PRK14297         96 FGDIFDSFFGGGFGSSSRRRNGPQRGADIEYTINLTFEEAVFGVEKEISVTRNENCETCNGTGAKPGTSPKTCDKCGGTG  175 (380)
T ss_pred             hhHHHHHHhccCccccccccCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeeeccCCCcccccccCCCcCccCCCccCeE
Confidence            44778999862         123578999999999999999998        689999999996      6899999999


Q ss_pred             eEeeeEEeecCcEE-EeeCCCCCCcceEE---CCCCCCceEeC
Q 037534           69 LYVDSILESQGVIV-KVPCLGCGGTGNIM---CAECGGRGHCS  107 (108)
Q Consensus        69 ~~~~~~~~~~G~~~-~~~C~~C~G~G~~~---C~~C~G~G~~~  107 (108)
                      ++....+...|+++ +.+|+.|.|+|+++   |..|+|+|++.
T Consensus       176 ~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~  218 (380)
T PRK14297        176 QIRVQRNTPLGSFVSTTTCDKCGGSGKVIEDPCNKCHGKGKVR  218 (380)
T ss_pred             EEEEEEEcCCceeEEEEeCCCCCCCceEcCCCCCCCCCCeEEE
Confidence            87311111236665 89999999999988   99999999763

>PRK14277 chaperone protein DnaJ; Provisional

Probab=99.74  E-value=8e-18  Score=133.34  Aligned_cols=94  Identities=30%  Similarity=0.630  Sum_probs=76.3

Q ss_pred             chhHhhhCC--C--------CCCCCCceEEEEEecchhhccCc--------ccccCCccCcCc------ccCCCCcCCce
Q 037534           14 SSLESLFCY--D--------KPIPEERIEKSISVSLSEKVIGD--------NPRCIECKAKGV------VLCATCSGSGL   69 (108)
Q Consensus        14 ~~f~~~f~~--~--------~~~rg~di~~~l~i~l~e~~~G~--------~~~C~~C~G~G~------~~C~~C~G~G~   69 (108)
                      ++|++||+.  .        .+.++.|+.++|.|+|+|+|+|+        .+.|+.|+|+|.      ..|+.|+|+|+
T Consensus       104 d~f~~~F~~~fgg~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~  183 (386)
T PRK14277        104 DIFEDIFGDFFGTGRRRAETGPQKGADIRYDLELTFEEAAFGTEKEIEVERFEKCDVCKGSGAKPGSKPVTCPVCHGTGQ  183 (386)
T ss_pred             HHHHHhhcccccCCCcCCCCCCCCCCCEEEEEEEEHHHHhCCeEEEEEEEeeccCCCCCCCCcCCCCCCccCCCCCCEEE
Confidence            467777751  1        23578999999999999999998        689999999996      68999999998


Q ss_pred             EeeeEEeecCcEE-EeeCCCCCCcceEE---CCCCCCceEeC
Q 037534           70 YVDSILESQGVIV-KVPCLGCGGTGNIM---CAECGGRGHCS  107 (108)
Q Consensus        70 ~~~~~~~~~G~~~-~~~C~~C~G~G~~~---C~~C~G~G~~~  107 (108)
                      ++...+...|+++ +.+|+.|.|+|+++   |+.|+|+|++.
T Consensus       184 ~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~  225 (386)
T PRK14277        184 VRTRQNTPFGRIVNIRTCDRCHGEGKIITDPCNKCGGTGRIR  225 (386)
T ss_pred             EEEEEeccCceEEEEEECCCCCcceeeccCCCCCCCCCcEEe
Confidence            7421222237766 78999999999998   99999999874

>PRK10767 chaperone protein DnaJ; Provisional

Probab=99.74  E-value=7.7e-18  Score=132.65  Aligned_cols=90  Identities=27%  Similarity=0.609  Sum_probs=75.6

Q ss_pred             chhHhhhCC------CCCCCCCceEEEEEecchhhccCc--------ccccCCccCcCc------ccCCCCcCCceEeee
Q 037534           14 SSLESLFCY------DKPIPEERIEKSISVSLSEKVIGD--------NPRCIECKAKGV------VLCATCSGSGLYVDS   73 (108)
Q Consensus        14 ~~f~~~f~~------~~~~rg~di~~~l~i~l~e~~~G~--------~~~C~~C~G~G~------~~C~~C~G~G~~~~~   73 (108)
                      ++|.+||+.      .+++++.|+.++|.|+|+|+|+|.        .+.|+.|+|+|.      ..|+.|+|+|++   
T Consensus        95 ~~f~~~fgg~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~---  171 (371)
T PRK10767         95 DIFGDIFGGGRGGGRQRARRGADLRYNMEITLEEAVRGVTKEIRIPTLVTCDTCHGSGAKPGTSPKTCPTCHGAGQV---  171 (371)
T ss_pred             hhhhhhccCCccccCCCCCCCCCeEEEEEeehHHhhCCeeEEEeeeecccCCCCCCcccCCCCCCccCCCCCCeeEE---
Confidence            456666652      224679999999999999999998        689999999996      589999999986   


Q ss_pred             EEeecCcEE-EeeCCCCCCcceEE---CCCCCCceEeC
Q 037534           74 ILESQGVIV-KVPCLGCGGTGNIM---CAECGGRGHCS  107 (108)
Q Consensus        74 ~~~~~G~~~-~~~C~~C~G~G~~~---C~~C~G~G~~~  107 (108)
                       ...+|+++ +.+|+.|.|+|+++   |+.|+|+|++.
T Consensus       172 -~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~  208 (371)
T PRK10767        172 -RMQQGFFTVQQTCPTCHGRGKIIKDPCKKCHGQGRVE  208 (371)
T ss_pred             -EEeeceEEEEEeCCCCCCceeECCCCCCCCCCCceEe
Confidence             33348776 88999999999987   99999999874

>PRK14294 chaperone protein DnaJ; Provisional

Probab=99.73  E-value=9.4e-18  Score=132.08  Aligned_cols=91  Identities=26%  Similarity=0.664  Sum_probs=77.2

Q ss_pred             cchhHhhhCCC---------CCCCCCceEEEEEecchhhccCc--------ccccCCccCcCc------ccCCCCcCCce
Q 037534           13 RSSLESLFCYD---------KPIPEERIEKSISVSLSEKVIGD--------NPRCIECKAKGV------VLCATCSGSGL   69 (108)
Q Consensus        13 ~~~f~~~f~~~---------~~~rg~di~~~l~i~l~e~~~G~--------~~~C~~C~G~G~------~~C~~C~G~G~   69 (108)
                      .++|++||++.         .+.+++|+.++|.|+|+|+|+|.        .+.|+.|+|+|.      ..|+.|+|+|.
T Consensus        93 ~d~f~~~fg~g~~~~~~~~~~~~~g~d~~~~l~lslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~  172 (366)
T PRK14294         93 GDIFEDFFGFGGGRRGRSRTAVRAGADLRYDLTLPFLEAAFGTEKEIRIQKLETCEECHGSGCEPGTSPTTCPQCGGSGQ  172 (366)
T ss_pred             hhhHHHhhccCCCcCCcccCCCCCCCCceEEEEeeHHHhcCCeEEEEEeeecccCCCCCCccccCCCCcccCCCcCCeEE
Confidence            46788888721         23578999999999999999998        689999999997      58999999999


Q ss_pred             EeeeEEeecCcEE-EeeCCCCCCcceEE---CCCCCCceEeC
Q 037534           70 YVDSILESQGVIV-KVPCLGCGGTGNIM---CAECGGRGHCS  107 (108)
Q Consensus        70 ~~~~~~~~~G~~~-~~~C~~C~G~G~~~---C~~C~G~G~~~  107 (108)
                      +    ....|+++ +++|+.|.|+|+++   |+.|+|+|++.
T Consensus       173 ~----~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~  210 (366)
T PRK14294        173 V----TQSQGFFSIRTTCPRCRGMGKVIVSPCKTCHGQGRVR  210 (366)
T ss_pred             E----EEEeeeEEEEeeCCCCCCcCeecCcCCCCCCCceEee
Confidence            6    33447776 99999999999998   99999999874

>PRK14284 chaperone protein DnaJ; Provisional

Probab=99.73  E-value=8.3e-18  Score=133.42  Aligned_cols=91  Identities=30%  Similarity=0.630  Sum_probs=77.0

Q ss_pred             cchhHhhhCC-----------CCCCCCCceEEEEEecchhhccCc--------ccccCCccCcCc------ccCCCCcCC
Q 037534           13 RSSLESLFCY-----------DKPIPEERIEKSISVSLSEKVIGD--------NPRCIECKAKGV------VLCATCSGS   67 (108)
Q Consensus        13 ~~~f~~~f~~-----------~~~~rg~di~~~l~i~l~e~~~G~--------~~~C~~C~G~G~------~~C~~C~G~   67 (108)
                      .++|++||+.           .++.++.|+.++|.|+|+|+|+|+        .+.|+.|+|+|.      ..|+.|+|+
T Consensus       105 ~d~f~~~fgg~g~~~~~~~~~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~  184 (391)
T PRK14284        105 GSFFEGLFGGLGEAFGMRGGPAGARQGASKKVHITLSFEEAAKGVEKELLVSGYKSCDACSGSGANSSQGIKVCDRCKGS  184 (391)
T ss_pred             ccchhhhccCccccccccccCCCcCCCCCeEEEEEEEHHHHhCCeeEEEEEeeeccCCCCcccccCCCCCCeecCccCCe
Confidence            3668888862           123578999999999999999998        689999999997      679999999


Q ss_pred             ceEeeeEEeecCcEE-EeeCCCCCCcceEE---CCCCCCceEeC
Q 037534           68 GLYVDSILESQGVIV-KVPCLGCGGTGNIM---CAECGGRGHCS  107 (108)
Q Consensus        68 G~~~~~~~~~~G~~~-~~~C~~C~G~G~~~---C~~C~G~G~~~  107 (108)
                      |.+    ...+|+++ +.+|+.|.|+|+++   |+.|+|+|++.
T Consensus       185 G~v----~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~  224 (391)
T PRK14284        185 GQV----VQSRGFFSMASTCPECGGEGRVITDPCSVCRGQGRIK  224 (391)
T ss_pred             eEE----EEEeceEEEEEECCCCCCCCcccCCcCCCCCCcceec
Confidence            996    33348776 88999999999988   99999999874

>PRK14295 chaperone protein DnaJ; Provisional

Probab=99.73  E-value=9.5e-18  Score=133.11  Aligned_cols=90  Identities=30%  Similarity=0.683  Sum_probs=74.3

Q ss_pred             chhHhhhCC----CCCCCCCceEEEEEecchhhccCc--------ccccCCccCcCc------ccCCCCcCCceEeeeEE
Q 037534           14 SSLESLFCY----DKPIPEERIEKSISVSLSEKVIGD--------NPRCIECKAKGV------VLCATCSGSGLYVDSIL   75 (108)
Q Consensus        14 ~~f~~~f~~----~~~~rg~di~~~l~i~l~e~~~G~--------~~~C~~C~G~G~------~~C~~C~G~G~~~~~~~   75 (108)
                      ++|.+||+.    ..++++.|+.++|.|+|+|+|+|.        .+.|+.|+|+|.      ..|+.|+|+|+++    
T Consensus       121 d~f~~~fg~~~~~~~~~~g~di~~~l~lsLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~----  196 (389)
T PRK14295        121 DVFGGLFNRGGRRTQPRRGADVESEVTLSFTEAIDGATVPLRLTSQAPCPACSGTGAKNGTTPRVCPTCSGTGQVS----  196 (389)
T ss_pred             hhhcccccCCCCCCCCCCCCCEEEEEEEEHHHHhCCceEEEEeeccccCCCCcccccCCCCCCcCCCCCCCEeEEE----
Confidence            345556642    234579999999999999999998        689999999996      6899999999972    


Q ss_pred             eecCcEE-EeeCCCCCCcceEE---CCCCCCceEeC
Q 037534           76 ESQGVIV-KVPCLGCGGTGNIM---CAECGGRGHCS  107 (108)
Q Consensus        76 ~~~G~~~-~~~C~~C~G~G~~~---C~~C~G~G~~~  107 (108)
                      ..+|+++ +.+|+.|.|+|+++   |..|.|+|++.
T Consensus       197 ~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~  232 (389)
T PRK14295        197 RNSGGFSLSEPCPDCKGRGLIADDPCLVCKGSGRAK  232 (389)
T ss_pred             EEecceEEEEecCCCcceeEEeccCCCCCCCCceEe
Confidence            3336655 88999999999998   99999999874

>PRK14301 chaperone protein DnaJ; Provisional

Probab=99.73  E-value=1e-17  Score=132.26  Aligned_cols=90  Identities=32%  Similarity=0.741  Sum_probs=76.0

Q ss_pred             chhHhhhCCC--------CCCCCCceEEEEEecchhhccCc--------ccccCCccCcCc------ccCCCCcCCceEe
Q 037534           14 SSLESLFCYD--------KPIPEERIEKSISVSLSEKVIGD--------NPRCIECKAKGV------VLCATCSGSGLYV   71 (108)
Q Consensus        14 ~~f~~~f~~~--------~~~rg~di~~~l~i~l~e~~~G~--------~~~C~~C~G~G~------~~C~~C~G~G~~~   71 (108)
                      ++|.+||++.        ++.++.|+.++|.|+|+|+|+|.        .+.|+.|+|+|.      ..|+.|+|+|.+ 
T Consensus        95 d~f~~~fg~g~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v-  173 (373)
T PRK14301         95 DIFGDLFGFSGGGSRRGPRPQAGSDLRYNLTVSFRQAAKGDEVTLRIPKNVTCDDCGGSGAAPGTSPETCRHCGGSGQV-  173 (373)
T ss_pred             HHHHHHhhccCcccccCCCCCCCCCEEEEEeccHHHHhCCceEEEEeeecccCCCCCCcccCCCCCCcccCCccCeeEE-
Confidence            4566667521        23578999999999999999998        689999999996      679999999996 


Q ss_pred             eeEEeecCcEE-EeeCCCCCCcceEE---CCCCCCceEeC
Q 037534           72 DSILESQGVIV-KVPCLGCGGTGNIM---CAECGGRGHCS  107 (108)
Q Consensus        72 ~~~~~~~G~~~-~~~C~~C~G~G~~~---C~~C~G~G~~~  107 (108)
                         ...+|+++ +.+|+.|.|+|+++   |+.|+|+|++.
T Consensus       174 ---~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~  210 (373)
T PRK14301        174 ---RQSQGFFQIAVPCPVCRGEGRVITHPCPKCKGSGIVQ  210 (373)
T ss_pred             ---EEEeeeEEEEEeCCCCCceeeecCCCCCCCCCCceec
Confidence               33457776 99999999999998   99999999874

>PRK14287 chaperone protein DnaJ; Provisional

Probab=99.73  E-value=1.3e-17  Score=131.60  Aligned_cols=96  Identities=28%  Similarity=0.637  Sum_probs=77.8

Q ss_pred             ccchhHhhhCC-------CCCCCCCceEEEEEecchhhccCc--------ccccCCccCcCc------ccCCCCcCCceE
Q 037534           12 RRSSLESLFCY-------DKPIPEERIEKSISVSLSEKVIGD--------NPRCIECKAKGV------VLCATCSGSGLY   70 (108)
Q Consensus        12 ~~~~f~~~f~~-------~~~~rg~di~~~l~i~l~e~~~G~--------~~~C~~C~G~G~------~~C~~C~G~G~~   70 (108)
                      +.++|++||+.       .++.++.|+.++|.|+|+|+|+|+        .+.|+.|+|+|.      ..|+.|+|+|++
T Consensus        88 ~~d~f~~~fgg~~~~~~~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~  167 (371)
T PRK14287         88 FSDIFDMFFGGGGGRRNPNAPRQGADLQYTMTLEFKEAVFGKETEIEIPREETCGTCHGSGAKPGTKPETCSHCGGSGQL  167 (371)
T ss_pred             hHHHHHhhhccccCCCCCCCCCCCCCEEEEEEEEHHHhcCCeEEEEEEeeeccCCCCCCcccCCCCCCcccCCCCCEEEE
Confidence            34678889872       124578999999999999999998        689999999996      679999999987


Q ss_pred             eeeEEeecCcEE-EeeCCCCCCcceEE---CCCCCCceEeC
Q 037534           71 VDSILESQGVIV-KVPCLGCGGTGNIM---CAECGGRGHCS  107 (108)
Q Consensus        71 ~~~~~~~~G~~~-~~~C~~C~G~G~~~---C~~C~G~G~~~  107 (108)
                      ....+...|+++ +.+|+.|.|+|+++   |..|.|+|++.
T Consensus       168 ~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~  208 (371)
T PRK14287        168 NVEQNTPFGRVVNRRVCHHCEGTGKIIKQKCATCGGKGKVR  208 (371)
T ss_pred             EEEEecCCceEEEEEeCCCCCCCCccccccCCCCCCeeEEe
Confidence            311122236765 88999999999988   99999999863

>PRK14288 chaperone protein DnaJ; Provisional

Probab=99.72  E-value=1.4e-17  Score=131.26  Aligned_cols=90  Identities=29%  Similarity=0.609  Sum_probs=74.6

Q ss_pred             chhHhhhCCC-------CCCCCCceEEEEEecchhhccCc--------ccccCCccCcCc-----ccCCCCcCCceEeee
Q 037534           14 SSLESLFCYD-------KPIPEERIEKSISVSLSEKVIGD--------NPRCIECKAKGV-----VLCATCSGSGLYVDS   73 (108)
Q Consensus        14 ~~f~~~f~~~-------~~~rg~di~~~l~i~l~e~~~G~--------~~~C~~C~G~G~-----~~C~~C~G~G~~~~~   73 (108)
                      ++|.+||+..       ++++++|+.++|.|+|+|+|+|+        .+.|+.|+|+|.     ..|+.|+|+|++   
T Consensus        92 ~~F~~~fg~g~~~~~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~---  168 (369)
T PRK14288         92 SFFEDAFGFGARGSKRQKSSIAPDYLQTIELSFKEAVFGCKKTIKVQYQSVCESCDGTGAKDKALETCKQCNGQGQV---  168 (369)
T ss_pred             HHHHhhcCCCCcccCcCCCCCCCCeeEeccccHHHHhCCeEEEEEEEeeccCCCCCCcccCCCCCcCCCCCCCCcEE---
Confidence            3456666521       23578999999999999999998        569999999997     689999999986   


Q ss_pred             EEeecCcEE-EeeCCCCCCcceEE---CCCCCCceEeC
Q 037534           74 ILESQGVIV-KVPCLGCGGTGNIM---CAECGGRGHCS  107 (108)
Q Consensus        74 ~~~~~G~~~-~~~C~~C~G~G~~~---C~~C~G~G~~~  107 (108)
                       ...+|+++ +.+|+.|.|+|+++   |+.|+|.|++.
T Consensus       169 -~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~  205 (369)
T PRK14288        169 -FMRQGFMSFAQTCGACQGKGKIIKTPCQACKGKTYIL  205 (369)
T ss_pred             -EEEeceEEEEEecCCCCCCceEccccCccCCCcceEE
Confidence             33447766 78999999999988   99999999864

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=99.71  E-value=3.2e-17  Score=131.39  Aligned_cols=95  Identities=26%  Similarity=0.589  Sum_probs=77.6

Q ss_pred             cccchhHhhhCC----CCCCCCCceEEEEEecchhhccCc--------ccccCCccCcCc-----ccCCCCcCCceEeee
Q 037534           11 RRRSSLESLFCY----DKPIPEERIEKSISVSLSEKVIGD--------NPRCIECKAKGV-----VLCATCSGSGLYVDS   73 (108)
Q Consensus        11 ~~~~~f~~~f~~----~~~~rg~di~~~l~i~l~e~~~G~--------~~~C~~C~G~G~-----~~C~~C~G~G~~~~~   73 (108)
                      ++.++|+.||+.    .++++|+|+.++|.|+|+|+|+|.        .+.|+.|+|+|.     ..|+.|+|+|+++  
T Consensus       102 d~~d~f~~~Fggg~~~~~~~rg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~--  179 (421)
T PTZ00037        102 DASDLFDLIFGGGRKPGGKKRGEDIVSHLKVTLEQIYNGAMRKLAINKDVICANCEGHGGPKDAFVDCKLCNGQGIRV--  179 (421)
T ss_pred             chhhhHHHhhccccccccccCCCCEEEEeeeeHHHHhCCCceEEEeeccccccccCCCCCCCCCCccCCCCCCCCeEE--
Confidence            345778888873    234679999999999999999998        689999999997     6899999999863  


Q ss_pred             EEeecCcE--E-EeeCCCCCCcceEE-----CCCCCCceEeC
Q 037534           74 ILESQGVI--V-KVPCLGCGGTGNIM-----CAECGGRGHCS  107 (108)
Q Consensus        74 ~~~~~G~~--~-~~~C~~C~G~G~~~-----C~~C~G~G~~~  107 (108)
                      .....|++  + +.+|+.|.|+|+++     |+.|+|+|++.
T Consensus       180 ~~~~~g~~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~v~  221 (421)
T PTZ00037        180 QIRQMGSMIHQTQSTCNSCNGQGKIIPESKKCKNCSGKGVKK  221 (421)
T ss_pred             EEEeecceeeEEEEeCCCCCCcceeccccccCCcCCCcceee
Confidence            22223542  3 88999999999986     99999999874

>PRK14281 chaperone protein DnaJ; Provisional

Probab=99.71  E-value=3.3e-17  Score=130.32  Aligned_cols=82  Identities=32%  Similarity=0.656  Sum_probs=69.3

Q ss_pred             CCCCceEEEEEecchhhccCc--------ccccCCccCcCc-----ccCCCCcCCceEeeeEEeecCcEE-EeeCCCCCC
Q 037534           26 IPEERIEKSISVSLSEKVIGD--------NPRCIECKAKGV-----VLCATCSGSGLYVDSILESQGVIV-KVPCLGCGG   91 (108)
Q Consensus        26 ~rg~di~~~l~i~l~e~~~G~--------~~~C~~C~G~G~-----~~C~~C~G~G~~~~~~~~~~G~~~-~~~C~~C~G   91 (108)
                      .++.|+.+.|.|+|+|+|+|+        .+.|+.|+|+|.     ..|+.|+|+|.+....+...|+++ +.+|+.|.|
T Consensus       134 ~~g~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G  213 (397)
T PRK14281        134 IPGTDLKIRLKLTLEEIAKGVEKTLKIKKQVPCKECNGTGSKTGATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGG  213 (397)
T ss_pred             CCCCCEEEEEEeEHHHHhCCeEEEEEEEeeecCCCCCCcccCCCCCccCCCCCCCcEEEEEEecccceEEEEEecCCCcc
Confidence            368899999999999999998        689999999997     679999999997321222236665 889999999


Q ss_pred             cceEE---CCCCCCceEeC
Q 037534           92 TGNIM---CAECGGRGHCS  107 (108)
Q Consensus        92 ~G~~~---C~~C~G~G~~~  107 (108)
                      +|+++   |+.|+|+|++.
T Consensus       214 ~G~~~~~~C~~C~G~g~v~  232 (397)
T PRK14281        214 EGRVVKDRCPACYGEGIKQ  232 (397)
T ss_pred             eeeeeCCCCCCCCCCccEe
Confidence            99998   99999999874

>PRK14300 chaperone protein DnaJ; Provisional

Probab=99.70  E-value=5.1e-17  Score=128.22  Aligned_cols=78  Identities=28%  Similarity=0.691  Sum_probs=69.7

Q ss_pred             CCCCceEEEEEecchhhccCc--------ccccCCccCcCc------ccCCCCcCCceEeeeEEeecCcEE-EeeCCCCC
Q 037534           26 IPEERIEKSISVSLSEKVIGD--------NPRCIECKAKGV------VLCATCSGSGLYVDSILESQGVIV-KVPCLGCG   90 (108)
Q Consensus        26 ~rg~di~~~l~i~l~e~~~G~--------~~~C~~C~G~G~------~~C~~C~G~G~~~~~~~~~~G~~~-~~~C~~C~   90 (108)
                      .++.|+.++|.|+|+|+|+|.        .+.|+.|+|+|.      ..|+.|+|+|.+    ...+|+++ +.+|+.|.
T Consensus       116 ~~g~di~~~l~~sLee~~~G~~k~i~~~r~~~C~~C~G~g~~~~~~~~~C~~C~G~G~~----~~~~g~~~~~~~C~~C~  191 (372)
T PRK14300        116 VRGSDLKYNLTINLEEAFHGIEKNISFSSEVKCDTCHGSGSEKGETVTTCDACSGVGAT----RMQQGFFTIEQACHKCQ  191 (372)
T ss_pred             CCCCCeeEEEEEEHHHHhCCceEEEEeeeccccCCCCCcccCCCCCCccCCCccCeEEE----EEeeceEEEEEeCCCCC
Confidence            478999999999999999998        689999999996      789999999996    33458776 88999999


Q ss_pred             CcceEE---CCCCCCceEeC
Q 037534           91 GTGNIM---CAECGGRGHCS  107 (108)
Q Consensus        91 G~G~~~---C~~C~G~G~~~  107 (108)
                      |+|+++   |+.|+|+|++.
T Consensus       192 G~G~~~~~~C~~C~G~g~v~  211 (372)
T PRK14300        192 GNGQIIKNPCKKCHGMGRYH  211 (372)
T ss_pred             ccceEeCCCCCCCCCceEEE
Confidence            999998   99999999974

>PRK14290 chaperone protein DnaJ; Provisional

Probab=99.70  E-value=1e-16  Score=126.20  Aligned_cols=95  Identities=28%  Similarity=0.641  Sum_probs=76.6

Q ss_pred             cccchhHhhhCCC------------C--CCCCCceEEEEEecchhhccCc--------ccccCCccCcCc-----ccCCC
Q 037534           11 RRRSSLESLFCYD------------K--PIPEERIEKSISVSLSEKVIGD--------NPRCIECKAKGV-----VLCAT   63 (108)
Q Consensus        11 ~~~~~f~~~f~~~------------~--~~rg~di~~~l~i~l~e~~~G~--------~~~C~~C~G~G~-----~~C~~   63 (108)
                      ++.++|++||+..            .  +.++.|+.++|.|+|+|+|+|+        .+.|+.|+|+|.     ..|+.
T Consensus        91 ~~~d~f~~~fg~~~~~~~~~~~~~~~~~~~~~~di~~~l~lsLee~~~G~~~~i~~~r~~~C~~C~G~g~~~~~~~~C~~  170 (365)
T PRK14290         91 DINDIFNQIFGGNFGSDFFSGFGNQQSTRNIDLDIYTNLDISLEDAYYGTEKRIKYRRNAMCPDCSGTGAKNGKLITCPT  170 (365)
T ss_pred             chhHHHHHHhcCccccccccccccccCCCCCCCCEEEEEEecHHHhcCCEEEEEEeeecccCCCCccccCCCCCCccCCC
Confidence            3457788888621            1  1237899999999999999998        689999999997     68999


Q ss_pred             CcCCceEeeeEEeecCcEE---EeeCCCCCCcceEE---CCCCCCceEeC
Q 037534           64 CSGSGLYVDSILESQGVIV---KVPCLGCGGTGNIM---CAECGGRGHCS  107 (108)
Q Consensus        64 C~G~G~~~~~~~~~~G~~~---~~~C~~C~G~G~~~---C~~C~G~G~~~  107 (108)
                      |+|+|+++  +.+..|++.   +.+|+.|.|+|+++   |+.|+|+|++.
T Consensus       171 C~G~G~~~--~~~~~g~~~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~  218 (365)
T PRK14290        171 CHGTGQQR--IVRGQGFFRMVTVTTCRTCGGRGRIPEEKCPRCNGTGTVV  218 (365)
T ss_pred             CCCcCEEE--EEeccCeEEEEEEEeCCCCCCceeEccCCCCCCCCceeEE
Confidence            99999863  233347643   68999999999988   99999999864

>PRK14293 chaperone protein DnaJ; Provisional

Probab=99.68  E-value=1.3e-16  Score=125.90  Aligned_cols=95  Identities=25%  Similarity=0.633  Sum_probs=76.3

Q ss_pred             cchhHhhhCC-------------CCCCCCCceEEEEEecchhhccCc--------ccccCCccCcCc------ccCCCCc
Q 037534           13 RSSLESLFCY-------------DKPIPEERIEKSISVSLSEKVIGD--------NPRCIECKAKGV------VLCATCS   65 (108)
Q Consensus        13 ~~~f~~~f~~-------------~~~~rg~di~~~l~i~l~e~~~G~--------~~~C~~C~G~G~------~~C~~C~   65 (108)
                      .++|++||+.             .++.++.|+.++|.|+|+|+|+|.        .+.|+.|+|+|.      ..|+.|+
T Consensus        88 ~d~f~~~fg~~~~~~~~~~~~~~~~~~kg~di~~~l~vsLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~  167 (374)
T PRK14293         88 ADIFETFFSGFGGAGGQGGRRRRRGPQRGDDLRYDLKLDFREAIFGGEKEIRIPHLETCETCRGSGAKPGTGPTTCSTCG  167 (374)
T ss_pred             HHHHHHHhcccCCCCCCCccccccCccCCCCeEEEEEeeHHHHhCCceEEEEeeccccCCCCCCcCCCCCCCCeeCCCCC
Confidence            3578888851             013468899999999999999998        689999999997      5799999


Q ss_pred             CCceEeeeEEeecCcEE-EeeCCCCCCcceEE---CCCCCCceEeC
Q 037534           66 GSGLYVDSILESQGVIV-KVPCLGCGGTGNIM---CAECGGRGHCS  107 (108)
Q Consensus        66 G~G~~~~~~~~~~G~~~-~~~C~~C~G~G~~~---C~~C~G~G~~~  107 (108)
                      |+|.+...++...|+++ +.+|+.|.|+|+++   |..|.|+|++.
T Consensus       168 G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~  213 (374)
T PRK14293        168 GAGQVRRATRTPFGSFTQVSECPTCNGTGQVIEDPCDACGGQGVKQ  213 (374)
T ss_pred             CcceEEEEEecCcceEEEEeeCCCCCcceeEeccCCCCCCCCcccc
Confidence            99987311122236666 88999999999997   99999999864

>PRK14289 chaperone protein DnaJ; Provisional

Probab=99.68  E-value=1e-16  Score=126.96  Aligned_cols=83  Identities=28%  Similarity=0.610  Sum_probs=70.2

Q ss_pred             CCCCCceEEEEEecchhhccCc--------ccccCCccCcCc------ccCCCCcCCceEeeeEEeecCcEE-EeeCCCC
Q 037534           25 PIPEERIEKSISVSLSEKVIGD--------NPRCIECKAKGV------VLCATCSGSGLYVDSILESQGVIV-KVPCLGC   89 (108)
Q Consensus        25 ~~rg~di~~~l~i~l~e~~~G~--------~~~C~~C~G~G~------~~C~~C~G~G~~~~~~~~~~G~~~-~~~C~~C   89 (108)
                      +.++.|+.+.|.|+|+|+|+|+        .+.|+.|+|+|.      ..|+.|+|+|.++...+...|+++ +.+|+.|
T Consensus       124 ~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C  203 (386)
T PRK14289        124 VFRGSDLRVKVKLNLKEISTGVEKKFKVKKYVPCSHCHGTGAEGNNGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTC  203 (386)
T ss_pred             CCCCCCeEEEEEEEHHHhhCCeEEEEEEEeecccCCCCCCCCCCCCCCCcCCCCcCeEEEEEEEecccceEEEEEecCCC
Confidence            3478999999999999999998        689999999996      689999999997421122237766 8999999


Q ss_pred             CCcceEE---CCCCCCceEeC
Q 037534           90 GGTGNIM---CAECGGRGHCS  107 (108)
Q Consensus        90 ~G~G~~~---C~~C~G~G~~~  107 (108)
                      .|+|+++   |..|+|+|++.
T Consensus       204 ~G~G~~~~~~C~~C~G~g~v~  224 (386)
T PRK14289        204 NGEGKIIKKKCKKCGGEGIVY  224 (386)
T ss_pred             CccccccCcCCCCCCCCcEEe
Confidence            9999988   99999999874

>PRK14292 chaperone protein DnaJ; Provisional

Probab=99.68  E-value=1.3e-16  Score=125.67  Aligned_cols=97  Identities=28%  Similarity=0.594  Sum_probs=79.1

Q ss_pred             cccchhHhhhCCC---------CCCCCCceEEEEEecchhhccCc--------ccccCCccCcCc-------ccCCCCcC
Q 037534           11 RRRSSLESLFCYD---------KPIPEERIEKSISVSLSEKVIGD--------NPRCIECKAKGV-------VLCATCSG   66 (108)
Q Consensus        11 ~~~~~f~~~f~~~---------~~~rg~di~~~l~i~l~e~~~G~--------~~~C~~C~G~G~-------~~C~~C~G   66 (108)
                      ++.++|++||+..         ++.++.|+.+.+.|+|+|+|+|.        ...|+.|+|+|.       ..|+.|+|
T Consensus        86 d~~d~f~~~fg~~~~~~~~~~~~~~~g~d~~~~l~~sLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~~C~~C~G  165 (371)
T PRK14292         86 DPMDIFEQLFGGAGFGGGRGRRGPARGDDLETEARITLEQARAGEEVEVEVDRLTECEHCHGSRTEPGGKPPKTCPTCRG  165 (371)
T ss_pred             ChHHHHHHhhCCCCcCCCCCcccccCCCCeEEEEeccHHHHcCCeEEEEEEEeeecCCCCcccccCCCCCCCccCCCCCC
Confidence            3457789998731         24578999999999999999998        689999999996       57999999


Q ss_pred             CceEeeeEEeecCcEE-EeeCCCCCCcceEE---CCCCCCceEeC
Q 037534           67 SGLYVDSILESQGVIV-KVPCLGCGGTGNIM---CAECGGRGHCS  107 (108)
Q Consensus        67 ~G~~~~~~~~~~G~~~-~~~C~~C~G~G~~~---C~~C~G~G~~~  107 (108)
                      +|.+...++...|+++ +.+|+.|.|.|+.+   |+.|+|+|++.
T Consensus       166 ~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~  210 (371)
T PRK14292        166 AGAVRAQARTIFGVVETQQPCPTCRGEGQIITDPCTVCRGRGRTL  210 (371)
T ss_pred             ccEEEEEEeccCceEEEeeecCCCcccceecCCCCCCCCCceEEe
Confidence            9987422222337776 88999999999998   99999999863

>PRK14283 chaperone protein DnaJ; Provisional

Probab=99.66  E-value=3.7e-16  Score=123.54  Aligned_cols=83  Identities=27%  Similarity=0.615  Sum_probs=69.8

Q ss_pred             CCCCCceEEEEEecchhhccCc--------ccccCCccCcCc------ccCCCCcCCceEeeeEEeecCcEE-EeeCCCC
Q 037534           25 PIPEERIEKSISVSLSEKVIGD--------NPRCIECKAKGV------VLCATCSGSGLYVDSILESQGVIV-KVPCLGC   89 (108)
Q Consensus        25 ~~rg~di~~~l~i~l~e~~~G~--------~~~C~~C~G~G~------~~C~~C~G~G~~~~~~~~~~G~~~-~~~C~~C   89 (108)
                      ++++.|+.++|.|+|+|+|+|.        .+.|+.|+|+|.      ..|+.|+|+|+++...+...|+++ +.+|+.|
T Consensus       116 ~~kg~di~~~l~vsLed~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C  195 (378)
T PRK14283        116 PQRGADIYTEVEITLEEAASGVEKDIKVRHTKKCPVCNGSRAEPGSEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDC  195 (378)
T ss_pred             ccCCCCeEEEeeeeHHHHhCCcceEEEeeeeccCCCCCccccCCCCCCccCCCcCCccEEEEEEeccCceEEEEEECCCC
Confidence            4579999999999999999998        689999999986      679999999997411111236665 8899999


Q ss_pred             CCcceEE---CCCCCCceEeC
Q 037534           90 GGTGNIM---CAECGGRGHCS  107 (108)
Q Consensus        90 ~G~G~~~---C~~C~G~G~~~  107 (108)
                      .|+|+.+   |..|+|+|++.
T Consensus       196 ~G~G~~~~~~C~~C~G~g~v~  216 (378)
T PRK14283        196 QGEGKIVEKPCSNCHGKGVVR  216 (378)
T ss_pred             CccceecCCCCCCCCCceeec
Confidence            9999987   99999999864

>PRK14291 chaperone protein DnaJ; Provisional

Probab=99.63  E-value=8.3e-16  Score=121.72  Aligned_cols=78  Identities=33%  Similarity=0.738  Sum_probs=67.8

Q ss_pred             CCCCceEEEEEecchhhccCc--------ccccCCccCcCc------ccCCCCcCCceEeeeEEeecCcEE-EeeCCCCC
Q 037534           26 IPEERIEKSISVSLSEKVIGD--------NPRCIECKAKGV------VLCATCSGSGLYVDSILESQGVIV-KVPCLGCG   90 (108)
Q Consensus        26 ~rg~di~~~l~i~l~e~~~G~--------~~~C~~C~G~G~------~~C~~C~G~G~~~~~~~~~~G~~~-~~~C~~C~   90 (108)
                      .++.|+.+.|.|+|+|+|+|+        .+.|+.|+|+|.      ..|+.|+|+|.+    ....|+++ +++|+.|.
T Consensus       127 ~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~----~~~~g~~~~~~~C~~C~  202 (382)
T PRK14291        127 VKGEDIYQTVEISLEEAYTGTTVSLEVPRYVPCEACGGTGYDPGSGEKVCPTCGGSGEI----YQRGGFFRISQTCPTCG  202 (382)
T ss_pred             cCCCCEEEEEEEEHHHhhCCEEEEEEEeeeccCCCCccccCCCCCCCccCCCCCCceEE----EEecceEEEEecCCCCC
Confidence            378999999999999999998        689999999996      689999999996    23346665 89999999


Q ss_pred             CcceEE--CCCCCCceEeC
Q 037534           91 GTGNIM--CAECGGRGHCS  107 (108)
Q Consensus        91 G~G~~~--C~~C~G~G~~~  107 (108)
                      |+|.+.  |..|+|.|++.
T Consensus       203 G~G~~~~~C~~C~G~g~v~  221 (382)
T PRK14291        203 GEGVLREPCSKCNGRGLVI  221 (382)
T ss_pred             CceEEccCCCCCCCCceEE
Confidence            999654  99999999864

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.59  E-value=2.4e-15  Score=117.45  Aligned_cols=89  Identities=27%  Similarity=0.636  Sum_probs=75.9

Q ss_pred             hHhhhCCC-----CCCCCCceEEEEEecchhhccCc--------ccccCCccCcCc-----ccCCCCcCCceEeeeEEee
Q 037534           16 LESLFCYD-----KPIPEERIEKSISVSLSEKVIGD--------NPRCIECKAKGV-----VLCATCSGSGLYVDSILES   77 (108)
Q Consensus        16 f~~~f~~~-----~~~rg~di~~~l~i~l~e~~~G~--------~~~C~~C~G~G~-----~~C~~C~G~G~~~~~~~~~   77 (108)
                      |++||+++     .+.|+.|+++.|+|+|+|+|.|.        +.+|+.|+|+|.     ..|+.|.|+|...   +..
T Consensus        83 f~~~F~~g~~~~~~~~rg~~~~~~~~~~Le~~y~G~s~kl~l~~~~iCs~C~GsGgksg~~~~C~~C~GsGv~~---~~~  159 (337)
T KOG0712|consen   83 FSQFFGFGGNGGRGRQRGKDVVHQLKVTLEELYMGKSKKLFLSRNFICSKCSGSGGKSGSAPKCTTCRGSGVQT---RTR  159 (337)
T ss_pred             HHHhccCCCcCccccccCCCceEEEEEEHHHhhcCCccceecccCccCCcCCCCCCCCCCCCCCCCCCCCCcee---EEE
Confidence            89999853     45679999999999999999996        899999999998     5799999999863   333


Q ss_pred             c---CcEE--EeeCCCCCCcceEE-----CCCCCCceEeC
Q 037534           78 Q---GVIV--KVPCLGCGGTGNIM-----CAECGGRGHCS  107 (108)
Q Consensus        78 ~---G~~~--~~~C~~C~G~G~~~-----C~~C~G~G~~~  107 (108)
                      +   |+.+  +.+|..|+|.|..+     |+.|.|+++++
T Consensus       160 ~~gPg~~qs~q~~C~~C~G~G~~~~~kd~C~~C~G~~~v~  199 (337)
T KOG0712|consen  160 QMGPGMVQSPQLVCDSCNGSGETISLKDRCKTCSGAKVVR  199 (337)
T ss_pred             eccccccccceeEeccCCCccccccccccCcccccchhhh
Confidence            2   5555  89999999999983     99999999864

>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation

Probab=99.40  E-value=8.3e-13  Score=81.22  Aligned_cols=55  Identities=38%  Similarity=0.921  Sum_probs=40.1

Q ss_pred             cCCccCcCc------ccCCCCcCCceEeeeEEeecCcEE-EeeCCCCCCcceEE----CCCCCCce
Q 037534           50 CIECKAKGV------VLCATCSGSGLYVDSILESQGVIV-KVPCLGCGGTGNIM----CAECGGRG  104 (108)
Q Consensus        50 C~~C~G~G~------~~C~~C~G~G~~~~~~~~~~G~~~-~~~C~~C~G~G~~~----C~~C~G~G  104 (108)
                      |+.|+|+|.      .+|+.|+|+|+++...+...++++ +++|+.|+|+|+++    |+.|+|+|
T Consensus         1 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i~~~~C~~C~G~g   66 (66)
T PF00684_consen    1 CPKCNGTGAKPGKKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKIIEKDPCKTCKGSG   66 (66)
T ss_dssp             -CCCTTTSB-STTT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-TSSB-SSSTTSS
T ss_pred             CCcCCCcccCCCCCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEECCCCCCCCCCcC
Confidence            889999998      799999999997421221225565 99999999999997    99999986

DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.

>PLN03165 chaperone protein dnaJ-related; Provisional

Probab=99.33  E-value=1.1e-11  Score=83.54  Aligned_cols=58  Identities=31%  Similarity=0.767  Sum_probs=49.4

Q ss_pred             ccccCCccCcCcccCCCCcCCceEeeeEEeecCcEE-EeeCCCCCCcceEECCCCCCceEeC
Q 037534           47 NPRCIECKAKGVVLCATCSGSGLYVDSILESQGVIV-KVPCLGCGGTGNIMCAECGGRGHCS  107 (108)
Q Consensus        47 ~~~C~~C~G~G~~~C~~C~G~G~~~~~~~~~~G~~~-~~~C~~C~G~G~~~C~~C~G~G~~~  107 (108)
                      .+.|+.|+|+|...|+.|+|+|.+.   ....++++ +.+|+.|.|+|+.+|+.|+|+|+++
T Consensus        41 ~v~C~~C~GsG~~~C~~C~G~G~v~---~~~~g~~q~~~~C~~C~G~Gk~~C~~C~G~G~~~   99 (111)
T PLN03165         41 TQPCFPCSGTGAQVCRFCVGSGNVT---VELGGGEKEVSKCINCDGAGSLTCTTCQGSGIQP   99 (111)
T ss_pred             CCCCCCCCCCCCcCCCCCcCcCeEE---EEeCCcEEEEEECCCCCCcceeeCCCCCCCEEEe
Confidence            6899999999999999999999973   22224344 8899999999999999999999875

>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]

Probab=98.20  E-value=5.6e-07  Score=70.47  Aligned_cols=22  Identities=41%  Similarity=0.990  Sum_probs=15.6

Q ss_pred             ccccCCccCcCcccCCCCcCCc
Q 037534           47 NPRCIECKAKGVVLCATCSGSG   68 (108)
Q Consensus        47 ~~~C~~C~G~G~~~C~~C~G~G   68 (108)
                      ...|..|.|.|...|+.|+|.|
T Consensus       187 v~~ch~c~gRG~~vc~gc~g~G  208 (406)
T KOG2813|consen  187 VTFCHACLGRGAMVCHGCSGSG  208 (406)
T ss_pred             hhhhhcccCCCceeccCcCCCC
Confidence            4567777777777777777777

>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.18  E-value=1.1e-06  Score=67.69  Aligned_cols=93  Identities=27%  Similarity=0.533  Sum_probs=74.3

Q ss_pred             ccccchhHhhhCC-C-CCCCCCceEEEEEecchhhccCc--------ccccCCccCcCc------ccCCCCcCCceEeee
Q 037534           10 HRRRSSLESLFCY-D-KPIPEERIEKSISVSLSEKVIGD--------NPRCIECKAKGV------VLCATCSGSGLYVDS   73 (108)
Q Consensus        10 ~~~~~~f~~~f~~-~-~~~rg~di~~~l~i~l~e~~~G~--------~~~C~~C~G~G~------~~C~~C~G~G~~~~~   73 (108)
                      .++.+.|+.+|++ . +...+.++.+.+.+.|+++..|.        ...|..|.|.|.      ..|..|.|+|.+.  
T Consensus       117 g~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~f~~A~~g~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~--  194 (288)
T KOG0715|consen  117 GNPFDVFLEFFGGKMNKRVPDKDQYYDLSLDFKEAVRGSKKRISFNVLSDCETCFGSGAEEGAKRESCKTCSGRGLVS--  194 (288)
T ss_pred             CCccchHHHhhcccccccccCcccccccccCHHHHhhccccceEEEeecccccccCcCcccccccccchhhhCccccc--
Confidence            3678999999987 2 33456788888999999999998        689999999997      7899999999641  


Q ss_pred             EEeecCcEE-EeeCCCCCCcceEE---CCCCCCceEe
Q 037534           74 ILESQGVIV-KVPCLGCGGTGNIM---CAECGGRGHC  106 (108)
Q Consensus        74 ~~~~~G~~~-~~~C~~C~G~G~~~---C~~C~G~G~~  106 (108)
                       .....++. . +|..|.+.|.+.   |..|.|.|.+
T Consensus       195 -~~~~~~f~~~-~~~~c~~~~~~~~~~c~~~~g~~~v  229 (288)
T KOG0715|consen  195 -NPKEDPFILY-TCSYCLGRGLVLRDNCQACSGAGQV  229 (288)
T ss_pred             -ccccCCccee-ecccccccceeccchHHHhhcchhh
Confidence             21222222 4 899999999998   9999999854

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=98.16  E-value=2.1e-06  Score=68.36  Aligned_cols=39  Identities=36%  Similarity=0.885  Sum_probs=34.9

Q ss_pred             ccccCCccCcCc-------------ccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceEE
Q 037534           47 NPRCIECKAKGV-------------VLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNIM   96 (108)
Q Consensus        47 ~~~C~~C~G~G~-------------~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~~   96 (108)
                      .++|+.|+|+|.             ++|+.|+|+|.++           ..+|+.|+|.|.+.
T Consensus       159 ~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i-----------~~pC~~C~G~G~v~  210 (371)
T COG0484         159 PKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKII-----------KDPCGKCKGKGRVK  210 (371)
T ss_pred             CCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeEC-----------CCCCCCCCCCCeEe
Confidence            789999999996             6899999999974           77999999999864

>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]

Probab=98.15  E-value=1.3e-06  Score=72.76  Aligned_cols=58  Identities=36%  Similarity=0.893  Sum_probs=44.4

Q ss_pred             cccCCccCcCc-----ccCCCCcCCceEeeeEEe---e---c----CcEE-EeeCCCCCCcceEE----CCCCCCceEe
Q 037534           48 PRCIECKAKGV-----VLCATCSGSGLYVDSILE---S---Q----GVIV-KVPCLGCGGTGNIM----CAECGGRGHC  106 (108)
Q Consensus        48 ~~C~~C~G~G~-----~~C~~C~G~G~~~~~~~~---~---~----G~~~-~~~C~~C~G~G~~~----C~~C~G~G~~  106 (108)
                      ..|+.|+|+|.     ..|+.|+|+|.+.. ...   .   .    +++. ..+|+.|.|+|.+.    |+.|.|+|.+
T Consensus         3 ~~C~~C~g~G~i~v~~e~c~vc~gtG~~~~-~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v~~~c~~c~G~gkv   80 (715)
T COG1107           3 KKCPECGGKGKIVVGEEECPVCHGTGFSDD-FDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTVYDTCPECGGTGKV   80 (715)
T ss_pred             ccccccCCCceEeeeeeecccccccccccc-cChhhhhhhhhccccccccCCCCCCeeccceeEEEEeecccCCCceeE
Confidence            57999999998     67999999998621 110   0   0    2223 56999999999986    9999999976

>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation

Probab=97.92  E-value=1e-05  Score=49.52  Aligned_cols=38  Identities=34%  Similarity=0.950  Sum_probs=27.1

Q ss_pred             CCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceEE---------------CCCCCCceEe
Q 037534           61 CATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNIM---------------CAECGGRGHC  106 (108)
Q Consensus        61 C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~~---------------C~~C~G~G~~  106 (108)
                      |+.|+|+|...   ..     ...+|+.|+|+|.++               |+.|+|+|.+
T Consensus         1 C~~C~G~G~~~---~~-----~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~   53 (66)
T PF00684_consen    1 CPKCNGTGAKP---GK-----KPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKI   53 (66)
T ss_dssp             -CCCTTTSB-S---TT-----T-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE
T ss_pred             CCcCCCcccCC---CC-----CCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeE
Confidence            78999999831   00     167899999999874               9999999987

DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.

>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]

Probab=97.82  E-value=8.8e-06  Score=63.89  Aligned_cols=46  Identities=33%  Similarity=0.857  Sum_probs=34.0

Q ss_pred             ccccCCccCcCc--------cc-----------------CCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceEECCCCC
Q 037534           47 NPRCIECKAKGV--------VL-----------------CATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNIMCAECG  101 (108)
Q Consensus        47 ~~~C~~C~G~G~--------~~-----------------C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~~C~~C~  101 (108)
                      ...|+.|+|.|.        ..                 |..|+|+|.              .+|++|.|+|++.|.+|.
T Consensus       198 ~~vc~gc~g~G~~~y~~~~~m~c~sc~G~~~~k~gt~~~C~~C~G~G~--------------~~C~tC~grG~k~C~TC~  263 (406)
T KOG2813|consen  198 AMVCHGCSGSGSNSYGIGTPMHCMSCTGVPPPKIGTHDLCYMCHGRGI--------------KECHTCKGRGKKPCTTCS  263 (406)
T ss_pred             ceeccCcCCCCccccccCcceecccccCCCCCCCCccchhhhccCCCc--------------ccCCcccCCCCccccccc
Confidence            889999999993        34                 445555554              368888888888888888


Q ss_pred             CceEe
Q 037534          102 GRGHC  106 (108)
Q Consensus       102 G~G~~  106 (108)
                      |.|.+
T Consensus       264 gtgsl  268 (406)
T KOG2813|consen  264 GTGSL  268 (406)
T ss_pred             Cccce
Confidence            88754

>PRK14278 chaperone protein DnaJ; Provisional

Probab=97.45  E-value=0.00017  Score=57.43  Aligned_cols=38  Identities=34%  Similarity=0.852  Sum_probs=31.7

Q ss_pred             ccccCCccCcCc---------------ccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceE
Q 037534           47 NPRCIECKAKGV---------------VLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNI   95 (108)
Q Consensus        47 ~~~C~~C~G~G~---------------~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~   95 (108)
                      ...|+.|+|+|.               ..|+.|+|+|.++           ..+|+.|.|+|.+
T Consensus       156 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~v  208 (378)
T PRK14278        156 PVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVI-----------PDPCHECAGDGRV  208 (378)
T ss_pred             ceecCCccCceEEEEEEeccceeEEEEEECCCCCccceee-----------CCCCCCCCCceeE
Confidence            568999999985               4799999999963           5679999999975

>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]

Probab=97.43  E-value=0.00015  Score=60.89  Aligned_cols=45  Identities=36%  Similarity=0.995  Sum_probs=32.2

Q ss_pred             ccccCCccCcCc------------------------ccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceEE-CCCCC
Q 037534           47 NPRCIECKAKGV------------------------VLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNIM-CAECG  101 (108)
Q Consensus        47 ~~~C~~C~G~G~------------------------~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~~-C~~C~  101 (108)
                      ...|+.|+|+|.                        ..|+.|+|+|.+.   .       ..+|+.|.|+|++. |..|.
T Consensus        18 ~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~---v-------~~~c~~c~G~gkv~~c~~cG   87 (715)
T COG1107          18 EEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVT---V-------YDTCPECGGTGKVLTCDICG   87 (715)
T ss_pred             eeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEE---E-------EeecccCCCceeEEeecccc
Confidence            566888888774                        4788888888751   1       55788888888876 77663

>PRK14296 chaperone protein DnaJ; Provisional

Probab=97.42  E-value=0.00025  Score=56.35  Aligned_cols=59  Identities=24%  Similarity=0.540  Sum_probs=38.8

Q ss_pred             CCCCceEEEEEe-cchhhccCc-------ccccCCccCcCc---------------ccCCCCcCCceEeeeEEeecCcEE
Q 037534           26 IPEERIEKSISV-SLSEKVIGD-------NPRCIECKAKGV---------------VLCATCSGSGLYVDSILESQGVIV   82 (108)
Q Consensus        26 ~rg~di~~~l~i-~l~e~~~G~-------~~~C~~C~G~G~---------------~~C~~C~G~G~~~~~~~~~~G~~~   82 (108)
                      ..|....+.+.. .+-....|.       ...|+.|+|+|.               ..|+.|+|+|.++           
T Consensus       137 ~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~-----------  205 (372)
T PRK14296        137 LFGVDKIIELDLLTNCSKCFGSGAESNSDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKII-----------  205 (372)
T ss_pred             hCCeeEEEEEeeeeccCCCCCCccCCCCCCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceee-----------
Confidence            345554444432 233444443       567899998885               3789999999863           


Q ss_pred             EeeCCCCCCcceE
Q 037534           83 KVPCLGCGGTGNI   95 (108)
Q Consensus        83 ~~~C~~C~G~G~~   95 (108)
                      ...|+.|.|.|.+
T Consensus       206 ~~~C~~C~G~g~v  218 (372)
T PRK14296        206 KNKCKNCKGKGKY  218 (372)
T ss_pred             cccccCCCCceEE
Confidence            5678899888865

>PRK14288 chaperone protein DnaJ; Provisional

Probab=97.41  E-value=0.00027  Score=56.08  Aligned_cols=38  Identities=34%  Similarity=0.892  Sum_probs=30.4

Q ss_pred             ccccCCccCcCc-----------ccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceE
Q 037534           47 NPRCIECKAKGV-----------VLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNI   95 (108)
Q Consensus        47 ~~~C~~C~G~G~-----------~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~   95 (108)
                      ...|+.|+|+|.           ..|+.|+|+|.++           ...|+.|.|.|.+
T Consensus       156 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~v  204 (369)
T PRK14288        156 LETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKII-----------KTPCQACKGKTYI  204 (369)
T ss_pred             CcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEc-----------cccCccCCCcceE
Confidence            568999999885           4699999999863           5679999998865

>PRK14298 chaperone protein DnaJ; Provisional

Probab=97.40  E-value=0.00011  Score=58.59  Aligned_cols=39  Identities=38%  Similarity=0.940  Sum_probs=33.1

Q ss_pred             ccccCCccCcCc---------------ccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceEE
Q 037534           47 NPRCIECKAKGV---------------VLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNIM   96 (108)
Q Consensus        47 ~~~C~~C~G~G~---------------~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~~   96 (108)
                      ...|+.|+|+|.               ..|+.|+|+|.++           ...|+.|.|+|.+.
T Consensus       158 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~v~  211 (377)
T PRK14298        158 PKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVI-----------ESPCPVCSGTGKVR  211 (377)
T ss_pred             CCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCccc-----------CCCCCCCCCccEEE
Confidence            478999999995               4799999999963           56899999999763

>PRK14279 chaperone protein DnaJ; Provisional

Probab=97.39  E-value=0.00011  Score=58.78  Aligned_cols=37  Identities=38%  Similarity=0.904  Sum_probs=20.2

Q ss_pred             cccCCccCcCc-----------ccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceE
Q 037534           48 PRCIECKAKGV-----------VLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNI   95 (108)
Q Consensus        48 ~~C~~C~G~G~-----------~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~   95 (108)
                      ..|+.|+|+|.           ..|+.|+|+|.++           ...|..|.|.|.+
T Consensus       191 ~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i-----------~~~C~~C~G~g~v  238 (392)
T PRK14279        191 KVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSII-----------EDPCEECKGTGVT  238 (392)
T ss_pred             CCCCCCcceEEEEEEecceEEEEecCCCCceeEEe-----------CCcCCCCCCCeEE
Confidence            45666666554           3466666666542           3456666665544

>PRK14282 chaperone protein DnaJ; Provisional

Probab=97.39  E-value=0.00025  Score=56.18  Aligned_cols=38  Identities=34%  Similarity=0.823  Sum_probs=30.2

Q ss_pred             ccccCCccCcCc---------------ccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceE
Q 037534           47 NPRCIECKAKGV---------------VLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNI   95 (108)
Q Consensus        47 ~~~C~~C~G~G~---------------~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~   95 (108)
                      ...|+.|+|+|.               ..|+.|+|+|.++           ...|+.|.|.|.+
T Consensus       169 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~v  221 (369)
T PRK14282        169 YVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIP-----------GEYCHECGGSGRI  221 (369)
T ss_pred             CcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeC-----------CCCCCCCCCceeE
Confidence            568999999885               3699999999863           5679999998854

>PRK14301 chaperone protein DnaJ; Provisional

Probab=97.37  E-value=0.0002  Score=56.90  Aligned_cols=38  Identities=34%  Similarity=0.882  Sum_probs=28.8

Q ss_pred             ccccCCccCcCc-----------ccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceE
Q 037534           47 NPRCIECKAKGV-----------VLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNI   95 (108)
Q Consensus        47 ~~~C~~C~G~G~-----------~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~   95 (108)
                      ...|+.|+|+|.           ..|+.|+|+|.++           ...|+.|.|+|.+
T Consensus       161 ~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~v  209 (373)
T PRK14301        161 PETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVI-----------THPCPKCKGSGIV  209 (373)
T ss_pred             CcccCCccCeeEEEEEeeeEEEEEeCCCCCceeeec-----------CCCCCCCCCCcee
Confidence            467888888875           4788888888863           5578888888865

>PRK14300 chaperone protein DnaJ; Provisional

Probab=97.36  E-value=0.00013  Score=57.91  Aligned_cols=38  Identities=34%  Similarity=0.845  Sum_probs=30.0

Q ss_pred             ccccCCccCcCc-----------ccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceE
Q 037534           47 NPRCIECKAKGV-----------VLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNI   95 (108)
Q Consensus        47 ~~~C~~C~G~G~-----------~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~   95 (108)
                      ...|+.|+|+|.           ..|+.|+|+|.++           ..+|+.|.|+|.+
T Consensus       162 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~v  210 (372)
T PRK14300        162 VTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQII-----------KNPCKKCHGMGRY  210 (372)
T ss_pred             CccCCCccCeEEEEEeeceEEEEEeCCCCCccceEe-----------CCCCCCCCCceEE
Confidence            567888888885           4688888888863           5678888888875

>PRK14286 chaperone protein DnaJ; Provisional

Probab=97.29  E-value=0.00017  Score=57.21  Aligned_cols=39  Identities=36%  Similarity=0.882  Sum_probs=31.0

Q ss_pred             ccccCCccCcCc-----------ccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceEE
Q 037534           47 NPRCIECKAKGV-----------VLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNIM   96 (108)
Q Consensus        47 ~~~C~~C~G~G~-----------~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~~   96 (108)
                      ...|+.|+|+|.           ..|+.|+|+|.++           ...|+.|.|+|.+.
T Consensus       167 ~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~~~  216 (372)
T PRK14286        167 PTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVI-----------SNPCKTCGGQGLQE  216 (372)
T ss_pred             CccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEe-----------cccCCCCCCCcEEe
Confidence            478999999885           4799999999863           56799999988763

>PRK14285 chaperone protein DnaJ; Provisional

Probab=97.26  E-value=0.00019  Score=56.93  Aligned_cols=38  Identities=32%  Similarity=0.864  Sum_probs=30.7

Q ss_pred             ccccCCccCcCc-----------ccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceE
Q 037534           47 NPRCIECKAKGV-----------VLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNI   95 (108)
Q Consensus        47 ~~~C~~C~G~G~-----------~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~   95 (108)
                      ...|+.|+|+|.           ..|+.|+|+|.++           ..+|..|.|+|.+
T Consensus       163 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~v  211 (365)
T PRK14285        163 PSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKII-----------SNPCKSCKGKGSL  211 (365)
T ss_pred             CccCCCccCceeEEecCceeEEeeecCCCCCccccc-----------CCCCCCCCCCCEE
Confidence            467999999885           4799999999863           5679999999865

>PRK14294 chaperone protein DnaJ; Provisional

Probab=97.26  E-value=0.00019  Score=56.82  Aligned_cols=39  Identities=31%  Similarity=0.831  Sum_probs=32.3

Q ss_pred             ccccCCccCcCc-----------ccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceEE
Q 037534           47 NPRCIECKAKGV-----------VLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNIM   96 (108)
Q Consensus        47 ~~~C~~C~G~G~-----------~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~~   96 (108)
                      ...|+.|+|+|.           ..|+.|+|+|.++           ...|+.|.|.|.+.
T Consensus       161 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~v~  210 (366)
T PRK14294        161 PTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVI-----------VSPCKTCHGQGRVR  210 (366)
T ss_pred             cccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeec-----------CcCCCCCCCceEee
Confidence            468999999986           4799999999863           66799999998763

>PRK14280 chaperone protein DnaJ; Provisional

Probab=97.26  E-value=0.0002  Score=56.97  Aligned_cols=39  Identities=31%  Similarity=0.814  Sum_probs=32.9

Q ss_pred             ccccCCccCcCc---------------ccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceEE
Q 037534           47 NPRCIECKAKGV---------------VLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNIM   96 (108)
Q Consensus        47 ~~~C~~C~G~G~---------------~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~~   96 (108)
                      ...|+.|+|+|.               ..|+.|+|+|.++           ..+|+.|.|+|.+.
T Consensus       160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~v~  213 (376)
T PRK14280        160 KETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEI-----------KEKCPTCHGKGKVR  213 (376)
T ss_pred             CccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCcee-----------cCCCCCCCCceEEE
Confidence            578999999985               4799999999963           66799999999763

>PRK14295 chaperone protein DnaJ; Provisional

Probab=97.25  E-value=0.00021  Score=57.11  Aligned_cols=38  Identities=37%  Similarity=0.876  Sum_probs=27.6

Q ss_pred             ccccCCccCcCc-----------ccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceE
Q 037534           47 NPRCIECKAKGV-----------VLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNI   95 (108)
Q Consensus        47 ~~~C~~C~G~G~-----------~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~   95 (108)
                      ...|+.|+|+|.           ..|+.|+|+|.++           ..+|+.|.|.|.+
T Consensus       183 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~~  231 (389)
T PRK14295        183 PRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIA-----------DDPCLVCKGSGRA  231 (389)
T ss_pred             CcCCCCCCCEeEEEEEecceEEEEecCCCcceeEEe-----------ccCCCCCCCCceE
Confidence            467888888775           4688888888753           5568888887765

>PRK14284 chaperone protein DnaJ; Provisional

Probab=97.23  E-value=0.00017  Score=57.59  Aligned_cols=38  Identities=37%  Similarity=0.846  Sum_probs=27.4

Q ss_pred             ccccCCccCcCc-----------ccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceE
Q 037534           47 NPRCIECKAKGV-----------VLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNI   95 (108)
Q Consensus        47 ~~~C~~C~G~G~-----------~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~   95 (108)
                      ...|+.|+|+|.           ..|+.|+|+|.++           ..+|+.|.|.|.+
T Consensus       175 ~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~v  223 (391)
T PRK14284        175 IKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVI-----------TDPCSVCRGQGRI  223 (391)
T ss_pred             CeecCccCCeeEEEEEeceEEEEEECCCCCCCCccc-----------CCcCCCCCCccee
Confidence            467888888775           4688888888752           4568888887764

>PRK14289 chaperone protein DnaJ; Provisional

Probab=97.22  E-value=0.00037  Score=55.52  Aligned_cols=38  Identities=39%  Similarity=0.953  Sum_probs=28.5

Q ss_pred             ccccCCccCcCc---------------ccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceE
Q 037534           47 NPRCIECKAKGV---------------VLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNI   95 (108)
Q Consensus        47 ~~~C~~C~G~G~---------------~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~   95 (108)
                      ...|+.|+|+|.               ..|+.|+|+|.++           ...|+.|.|+|.+
T Consensus       171 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~v  223 (386)
T PRK14289        171 SETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKII-----------KKKCKKCGGEGIV  223 (386)
T ss_pred             CCcCCCCcCeEEEEEEEecccceEEEEEecCCCCcccccc-----------CcCCCCCCCCcEE
Confidence            577888888876               2688888888752           5578888888865

>PRK14276 chaperone protein DnaJ; Provisional

Probab=97.21  E-value=0.00021  Score=56.92  Aligned_cols=38  Identities=42%  Similarity=0.943  Sum_probs=32.4

Q ss_pred             ccccCCccCcCc---------------ccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceE
Q 037534           47 NPRCIECKAKGV---------------VLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNI   95 (108)
Q Consensus        47 ~~~C~~C~G~G~---------------~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~   95 (108)
                      ...|+.|+|+|.               ..|+.|+|+|.++           ..+|+.|.|.|.+
T Consensus       163 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~~  215 (380)
T PRK14276        163 PVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEI-----------KEPCQTCHGTGHE  215 (380)
T ss_pred             CccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccc-----------cCCCCCCCCceEE
Confidence            578999999985               4799999999963           6689999999975

>PLN03165 chaperone protein dnaJ-related; Provisional

Probab=97.19  E-value=0.00037  Score=47.04  Aligned_cols=35  Identities=31%  Similarity=0.757  Sum_probs=26.2

Q ss_pred             ccccCCccCcCc------------ccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceE
Q 037534           47 NPRCIECKAKGV------------VLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNI   95 (108)
Q Consensus        47 ~~~C~~C~G~G~------------~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~   95 (108)
                      ...|+.|+|+|.            ..|+.|+|+|.+              .|+.|.|+|.+
T Consensus        52 ~~~C~~C~G~G~v~~~~~g~~q~~~~C~~C~G~Gk~--------------~C~~C~G~G~~   98 (111)
T PLN03165         52 AQVCRFCVGSGNVTVELGGGEKEVSKCINCDGAGSL--------------TCTTCQGSGIQ   98 (111)
T ss_pred             CcCCCCCcCcCeEEEEeCCcEEEEEECCCCCCccee--------------eCCCCCCCEEE
Confidence            457888888775            478888888874              38888888764

>PRK10767 chaperone protein DnaJ; Provisional

Probab=97.15  E-value=0.00029  Score=55.77  Aligned_cols=38  Identities=37%  Similarity=0.906  Sum_probs=27.4

Q ss_pred             ccccCCccCcCc-----------ccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceE
Q 037534           47 NPRCIECKAKGV-----------VLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNI   95 (108)
Q Consensus        47 ~~~C~~C~G~G~-----------~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~   95 (108)
                      ...|+.|+|+|.           .+|+.|+|+|.++           ...|+.|.|+|.+
T Consensus       159 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~v  207 (371)
T PRK10767        159 PKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKII-----------KDPCKKCHGQGRV  207 (371)
T ss_pred             CccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeEC-----------CCCCCCCCCCceE
Confidence            357888888875           3588888888752           4568888888765

>PRK14277 chaperone protein DnaJ; Provisional

Probab=97.15  E-value=0.00027  Score=56.36  Aligned_cols=38  Identities=39%  Similarity=0.920  Sum_probs=32.7

Q ss_pred             ccccCCccCcCc---------------ccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceE
Q 037534           47 NPRCIECKAKGV---------------VLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNI   95 (108)
Q Consensus        47 ~~~C~~C~G~G~---------------~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~   95 (108)
                      ...|+.|+|+|.               ..|+.|+|+|.++           ...|..|.|+|.+
T Consensus       172 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~v  224 (386)
T PRK14277        172 PVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKII-----------TDPCNKCGGTGRI  224 (386)
T ss_pred             CccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeec-----------cCCCCCCCCCcEE
Confidence            578999999986               4799999999963           5689999999976

>PRK14290 chaperone protein DnaJ; Provisional

Probab=97.14  E-value=0.00036  Score=55.21  Aligned_cols=38  Identities=34%  Similarity=0.800  Sum_probs=32.9

Q ss_pred             ccccCCccCcCc---------------ccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceE
Q 037534           47 NPRCIECKAKGV---------------VLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNI   95 (108)
Q Consensus        47 ~~~C~~C~G~G~---------------~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~   95 (108)
                      ...|+.|+|+|.               ..|+.|+|+|.++           ...|+.|.|+|.+
T Consensus       165 ~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~v  217 (365)
T PRK14290        165 LITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIP-----------EEKCPRCNGTGTV  217 (365)
T ss_pred             CccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEc-----------cCCCCCCCCceeE
Confidence            578999999994               4799999999963           6789999999986

>PRK14291 chaperone protein DnaJ; Provisional

Probab=97.13  E-value=0.00039  Score=55.38  Aligned_cols=37  Identities=35%  Similarity=0.928  Sum_probs=26.5

Q ss_pred             ccccCCccCcCc-----------ccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceE
Q 037534           47 NPRCIECKAKGV-----------VLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNI   95 (108)
Q Consensus        47 ~~~C~~C~G~G~-----------~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~   95 (108)
                      ...|+.|+|+|.           ..|+.|+|+|.+            ...|..|.|.|.+
T Consensus       173 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~------------~~~C~~C~G~g~v  220 (382)
T PRK14291        173 EKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGVL------------REPCSKCNGRGLV  220 (382)
T ss_pred             CccCCCCCCceEEEEecceEEEEecCCCCCCceEE------------ccCCCCCCCCceE
Confidence            467888888775           468888888853            4568888887754

>PRK14281 chaperone protein DnaJ; Provisional

Probab=97.11  E-value=0.00036  Score=55.89  Aligned_cols=38  Identities=37%  Similarity=0.783  Sum_probs=32.8

Q ss_pred             ccccCCccCcCc---------------ccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceE
Q 037534           47 NPRCIECKAKGV---------------VLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNI   95 (108)
Q Consensus        47 ~~~C~~C~G~G~---------------~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~   95 (108)
                      ...|+.|+|+|.               .+|+.|+|+|.++           ...|+.|.|.|.+
T Consensus       179 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~v  231 (397)
T PRK14281        179 TETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVV-----------KDRCPACYGEGIK  231 (397)
T ss_pred             CccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeee-----------CCCCCCCCCCccE
Confidence            678999999995               4699999999963           5689999999976

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=97.10  E-value=0.00033  Score=55.06  Aligned_cols=39  Identities=36%  Similarity=0.882  Sum_probs=33.0

Q ss_pred             ccccCCccCcCc---------------ccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceEE
Q 037534           47 NPRCIECKAKGV---------------VLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNIM   96 (108)
Q Consensus        47 ~~~C~~C~G~G~---------------~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~~   96 (108)
                      ...|+.|+|+|.               ..|+.|+|+|.++           ...|+.|.|+|.+.
T Consensus       160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~v~  213 (354)
T TIGR02349       160 PKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKII-----------KEPCSTCKGKGRVK  213 (354)
T ss_pred             CccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceec-----------CCCCCCCCCCcEec
Confidence            578999999985               4799999999963           56799999999763

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>TIGR02642 phage_xxxx uncharacterized phage protein

Probab=97.09  E-value=0.00031  Score=51.34  Aligned_cols=28  Identities=36%  Similarity=0.832  Sum_probs=15.0

Q ss_pred             ccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceE
Q 037534           59 VLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNI   95 (108)
Q Consensus        59 ~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~   95 (108)
                      ..|+.|+|+|.++   ..      ..+|+.|+|+|++
T Consensus       100 ~~C~~C~G~G~~i---~~------~~~C~~C~G~G~v  127 (186)
T TIGR02642       100 CKCPRCRGTGLIQ---RR------QRECDTCAGTGRF  127 (186)
T ss_pred             CcCCCCCCeeEEe---cC------CCCCCCCCCccEE
Confidence            4566666666642   10      2356666666654

This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.

>PRK14297 chaperone protein DnaJ; Provisional

Probab=97.07  E-value=0.00041  Score=55.19  Aligned_cols=38  Identities=34%  Similarity=0.886  Sum_probs=32.3

Q ss_pred             ccccCCccCcCc---------------ccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceE
Q 037534           47 NPRCIECKAKGV---------------VLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNI   95 (108)
Q Consensus        47 ~~~C~~C~G~G~---------------~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~   95 (108)
                      ...|+.|+|+|.               ..|+.|+|+|.++           ...|..|.|.|.+
T Consensus       165 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~v  217 (380)
T PRK14297        165 PKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVI-----------EDPCNKCHGKGKV  217 (380)
T ss_pred             CccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEc-----------CCCCCCCCCCeEE
Confidence            578999999985               4799999999963           5689999999964

>PRK14293 chaperone protein DnaJ; Provisional

Probab=96.93  E-value=0.00059  Score=54.17  Aligned_cols=38  Identities=37%  Similarity=0.904  Sum_probs=32.5

Q ss_pred             ccccCCccCcCc---------------ccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceE
Q 037534           47 NPRCIECKAKGV---------------VLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNI   95 (108)
Q Consensus        47 ~~~C~~C~G~G~---------------~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~   95 (108)
                      ...|+.|+|+|.               ..|+.|+|+|.++           ...|..|.|+|.+
T Consensus       160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~v  212 (374)
T PRK14293        160 PTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVI-----------EDPCDACGGQGVK  212 (374)
T ss_pred             CeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEe-----------ccCCCCCCCCccc
Confidence            568999999996               3799999999963           5689999999975

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=96.92  E-value=0.00076  Score=54.60  Aligned_cols=41  Identities=27%  Similarity=0.707  Sum_probs=33.3

Q ss_pred             ccccCCccCcCc---------------ccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceEE
Q 037534           47 NPRCIECKAKGV---------------VLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNIM   96 (108)
Q Consensus        47 ~~~C~~C~G~G~---------------~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~~   96 (108)
                      ...|+.|+|+|.               ..|+.|+|+|.++   . .     ..+|+.|.|+|.+.
T Consensus       166 ~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i---~-~-----~~~C~~C~G~g~v~  221 (421)
T PTZ00037        166 FVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKII---P-E-----SKKCKNCSGKGVKK  221 (421)
T ss_pred             CccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceec---c-c-----cccCCcCCCcceee
Confidence            678999999994               4799999999973   1 0     46899999999763

>PRK14287 chaperone protein DnaJ; Provisional

Probab=96.91  E-value=0.00055  Score=54.37  Aligned_cols=38  Identities=34%  Similarity=0.939  Sum_probs=32.3

Q ss_pred             ccccCCccCcCc---------------ccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceE
Q 037534           47 NPRCIECKAKGV---------------VLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNI   95 (108)
Q Consensus        47 ~~~C~~C~G~G~---------------~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~   95 (108)
                      ...|+.|+|+|.               ..|+.|+|+|.++           ...|..|.|.|.+
T Consensus       155 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~v  207 (371)
T PRK14287        155 PETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKII-----------KQKCATCGGKGKV  207 (371)
T ss_pred             CcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccc-----------cccCCCCCCeeEE
Confidence            578999999985               4799999999963           6679999999865

>PRK14283 chaperone protein DnaJ; Provisional

Probab=96.84  E-value=0.00077  Score=53.58  Aligned_cols=38  Identities=34%  Similarity=0.871  Sum_probs=32.5

Q ss_pred             ccccCCccCcCc---------------ccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceE
Q 037534           47 NPRCIECKAKGV---------------VLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNI   95 (108)
Q Consensus        47 ~~~C~~C~G~G~---------------~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~   95 (108)
                      ...|+.|+|+|.               .+|+.|+|+|.++           ..+|..|.|+|.+
T Consensus       163 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~v  215 (378)
T PRK14283        163 VKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIV-----------EKPCSNCHGKGVV  215 (378)
T ss_pred             CccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceec-----------CCCCCCCCCceee
Confidence            578999999987               3699999999963           5679999999975

>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.82  E-value=0.0021  Score=49.54  Aligned_cols=51  Identities=25%  Similarity=0.556  Sum_probs=40.5

Q ss_pred             cccCCccCcCcccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceEECCCCC
Q 037534           48 PRCIECKAKGVVLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNIMCAECG  101 (108)
Q Consensus        48 ~~C~~C~G~G~~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~~C~~C~  101 (108)
                      -.|..|.|.+...|..|+|+=.++   ...........|+.|+..|.+.|+.|.
T Consensus       230 ~~C~~CGg~rFlpC~~C~GS~kv~---~~~~~~~~~~rC~~CNENGLvrCp~Cs  280 (281)
T KOG2824|consen  230 GVCESCGGARFLPCSNCHGSCKVH---EEEEDDGGVLRCLECNENGLVRCPVCS  280 (281)
T ss_pred             CcCCCcCCcceEecCCCCCceeee---eeccCCCcEEECcccCCCCceeCCccC
Confidence            789999999999999999998862   211111226789999999999999996

>PRK14292 chaperone protein DnaJ; Provisional

Probab=96.70  E-value=0.0012  Score=52.26  Aligned_cols=38  Identities=34%  Similarity=0.868  Sum_probs=32.2

Q ss_pred             ccccCCccCcCc---------------ccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceE
Q 037534           47 NPRCIECKAKGV---------------VLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNI   95 (108)
Q Consensus        47 ~~~C~~C~G~G~---------------~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~   95 (108)
                      ...|+.|+|+|.               ..|+.|+|+|..+           ...|+.|.|+|.+
T Consensus       157 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~v  209 (371)
T PRK14292        157 PKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQII-----------TDPCTVCRGRGRT  209 (371)
T ss_pred             CccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceec-----------CCCCCCCCCceEE
Confidence            478999999996               3699999999963           6789999999976

>TIGR02642 phage_xxxx uncharacterized phage protein

Probab=96.69  E-value=0.0013  Score=48.07  Aligned_cols=25  Identities=32%  Similarity=0.934  Sum_probs=20.2

Q ss_pred             ccccCCccCcCc-----ccCCCCcCCceEe
Q 037534           47 NPRCIECKAKGV-----VLCATCSGSGLYV   71 (108)
Q Consensus        47 ~~~C~~C~G~G~-----~~C~~C~G~G~~~   71 (108)
                      ...|+.|+|+|.     ..|+.|+|+|++.
T Consensus        99 ~~~C~~C~G~G~~i~~~~~C~~C~G~G~v~  128 (186)
T TIGR02642        99 SCKCPRCRGTGLIQRRQRECDTCAGTGRFR  128 (186)
T ss_pred             CCcCCCCCCeeEEecCCCCCCCCCCccEEe
Confidence            678999999987     2499999999863

This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.

>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs

Probab=96.06  E-value=0.0083  Score=42.19  Aligned_cols=48  Identities=25%  Similarity=0.517  Sum_probs=33.8

Q ss_pred             ccccCCccCcCcccCCCCcCCceEeeeEEee-cCcEEEeeCCCCCCcceEEC
Q 037534           47 NPRCIECKAKGVVLCATCSGSGLYVDSILES-QGVIVKVPCLGCGGTGNIMC   97 (108)
Q Consensus        47 ~~~C~~C~G~G~~~C~~C~G~G~~~~~~~~~-~G~~~~~~C~~C~G~G~~~C   97 (108)
                      ...|..|.|.+-+.|..|+|+=.++   ... .+......|+.|+..|.+.|
T Consensus        99 ~~~C~~Cgg~rfv~C~~C~Gs~k~~---~~~~~~~~~~~rC~~Cnengl~~c  147 (147)
T cd03031          99 GGVCEGCGGARFVPCSECNGSCKVF---AENATAAGGFLRCPECNENGLVRC  147 (147)
T ss_pred             CCCCCCCCCcCeEECCCCCCcceEE---eccCcccccEEECCCCCccccccC
Confidence            4579999999999999999988863   111 01112567888888777654

This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.

>PRK10266 curved DNA-binding protein CbpA; Provisional

Probab=94.89  E-value=0.032  Score=43.17  Aligned_cols=36  Identities=19%  Similarity=0.202  Sum_probs=28.3

Q ss_pred             cccchhHhhhCC-C------CCCCCCceEEEEEecchhhccCc
Q 037534           11 RRRSSLESLFCY-D------KPIPEERIEKSISVSLSEKVIGD   46 (108)
Q Consensus        11 ~~~~~f~~~f~~-~------~~~rg~di~~~l~i~l~e~~~G~   46 (108)
                      ++.++|+.||+. .      .++++.|+.+++.|+|+|++.|.
T Consensus        93 ~~~~~f~~~~g~~~~~~~~~~~~kg~di~~~v~isLee~~~G~  135 (306)
T PRK10266         93 DFDDIFSSIFGQHARQSRQRPAARGHDIEIEVAVFLEETLTEH  135 (306)
T ss_pred             CHHHHHHHHhCCCCCCCCCCCCCCCCceEEEEEEEHHHhcCCc
Confidence            445677888873 1      23468999999999999999998

>PRK14299 chaperone protein DnaJ; Provisional

Probab=94.80  E-value=0.03  Score=43.08  Aligned_cols=36  Identities=17%  Similarity=0.239  Sum_probs=28.2

Q ss_pred             cccchhHhhhCC-C--------------CCCCCCceEEEEEecchhhccCc
Q 037534           11 RRRSSLESLFCY-D--------------KPIPEERIEKSISVSLSEKVIGD   46 (108)
Q Consensus        11 ~~~~~f~~~f~~-~--------------~~~rg~di~~~l~i~l~e~~~G~   46 (108)
                      +..++|++||+. .              .++++.|+.+++.|+|+|+|.|.
T Consensus        97 ~~~d~f~~~fgg~~~~~~~g~~~~~~~~~~~~g~dl~~~l~isL~ea~~G~  147 (291)
T PRK14299         97 DFSDFFQQLFGGRGGFGGFGDLFGSVGRRARKGRDLEAELPLTLEEAYRGG  147 (291)
T ss_pred             CHHHHHHHHhCCCCCCCCcccccccccCCCCCCCCEEEEEEecHHHHhCCC
Confidence            344678888862 1              13468999999999999999998

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=92.07  E-value=0.083  Score=41.90  Aligned_cols=40  Identities=35%  Similarity=0.914  Sum_probs=30.5

Q ss_pred             ccccCCccCcCc----------------ccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceE
Q 037534           47 NPRCIECKAKGV----------------VLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNI   95 (108)
Q Consensus        47 ~~~C~~C~G~G~----------------~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~   95 (108)
                      ...|..|.|+|.                ..|..|+|+|..+   ..      ...|+.|.|++.+
T Consensus       143 ~~~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~~---~~------kd~C~~C~G~~~v  198 (337)
T KOG0712|consen  143 APKCTTCRGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGETI---SL------KDRCKTCSGAKVV  198 (337)
T ss_pred             CCCCCCCCCCCceeEEEeccccccccceeEeccCCCccccc---cc------cccCcccccchhh
Confidence            567999999886                5788888888841   11      6689999998865

>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs

Probab=90.44  E-value=0.39  Score=33.72  Aligned_cols=35  Identities=31%  Similarity=0.946  Sum_probs=28.0

Q ss_pred             ccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceEE------------CCCCCCceEeC
Q 037534           59 VLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNIM------------CAECGGRGHCS  107 (108)
Q Consensus        59 ~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~~------------C~~C~G~G~~~  107 (108)
                      ..|..|.|.+.+              +|+.|+|+=++.            |+.|+-.|.+.
T Consensus       100 ~~C~~Cgg~rfv--------------~C~~C~Gs~k~~~~~~~~~~~~~rC~~Cnengl~~  146 (147)
T cd03031         100 GVCEGCGGARFV--------------PCSECNGSCKVFAENATAAGGFLRCPECNENGLVR  146 (147)
T ss_pred             CCCCCCCCcCeE--------------ECCCCCCcceEEeccCcccccEEECCCCCcccccc
Confidence            579999998886              799999975442            99999888763

This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=88.34  E-value=0.33  Score=43.15  Aligned_cols=32  Identities=28%  Similarity=0.590  Sum_probs=19.9

Q ss_pred             ccCCCCcCCceEeeeEEeecCcEE--EeeCCCCCCcce
Q 037534           59 VLCATCSGSGLYVDSILESQGVIV--KVPCLGCGGTGN   94 (108)
Q Consensus        59 ~~C~~C~G~G~~~~~~~~~~G~~~--~~~C~~C~G~G~   94 (108)
                      -.|+.|.|.|++.    ...+++.  ..+|+.|+|+..
T Consensus       737 G~C~~C~G~G~~~----~~~~f~~~~~~~C~~C~G~R~  770 (924)
T TIGR00630       737 GRCEACQGDGVIK----IEMHFLPDVYVPCEVCKGKRY  770 (924)
T ss_pred             CCCCCCccceEEE----EEccCCCCcccCCCCcCCcee
Confidence            3588889999862    2223322  667777777653

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=86.61  E-value=0.83  Score=35.43  Aligned_cols=35  Identities=31%  Similarity=0.934  Sum_probs=28.0

Q ss_pred             ccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceEE-----------CCCCCCceEeC
Q 037534           59 VLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNIM-----------CAECGGRGHCS  107 (108)
Q Consensus        59 ~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~~-----------C~~C~G~G~~~  107 (108)
                      ..|..|.|.+.+              +|..|+|+-++.           |..|+-.|.+.
T Consensus       230 ~~C~~CGg~rFl--------------pC~~C~GS~kv~~~~~~~~~~~rC~~CNENGLvr  275 (281)
T KOG2824|consen  230 GVCESCGGARFL--------------PCSNCHGSCKVHEEEEDDGGVLRCLECNENGLVR  275 (281)
T ss_pred             CcCCCcCCcceE--------------ecCCCCCceeeeeeccCCCcEEECcccCCCCcee
Confidence            479999988886              799999886554           99999888763

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=83.56  E-value=0.74  Score=41.06  Aligned_cols=31  Identities=29%  Similarity=0.632  Sum_probs=18.7

Q ss_pred             cCCCCcCCceEeeeEEeecCcEE--EeeCCCCCCcce
Q 037534           60 LCATCSGSGLYVDSILESQGVIV--KVPCLGCGGTGN   94 (108)
Q Consensus        60 ~C~~C~G~G~~~~~~~~~~G~~~--~~~C~~C~G~G~   94 (108)
                      .|+.|.|.|++.    ....++.  ..+|+.|+|+..
T Consensus       740 ~C~~C~G~G~~~----~~~~f~~~~~~~C~~C~G~R~  772 (943)
T PRK00349        740 RCEACQGDGVIK----IEMHFLPDVYVPCDVCKGKRY  772 (943)
T ss_pred             CCCcccccceEE----EEeccCCCccccCccccCccc
Confidence            588888888862    2222221  557777777643

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=80.58  E-value=1.2  Score=39.75  Aligned_cols=23  Identities=35%  Similarity=0.774  Sum_probs=18.4

Q ss_pred             eeCCCCCCcceEE------------CCCCCCceEe
Q 037534           84 VPCLGCGGTGNIM------------CAECGGRGHC  106 (108)
Q Consensus        84 ~~C~~C~G~G~~~------------C~~C~G~G~~  106 (108)
                      -.|+.|.|.|.+.            |+.|+|+++.
T Consensus       737 G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~  771 (924)
T TIGR00630       737 GRCEACQGDGVIKIEMHFLPDVYVPCEVCKGKRYN  771 (924)
T ss_pred             CCCCCCccceEEEEEccCCCCcccCCCCcCCceeC
Confidence            3499999999875            9999988764

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=80.30  E-value=1.2  Score=42.43  Aligned_cols=31  Identities=29%  Similarity=0.589  Sum_probs=19.8

Q ss_pred             cCCCCcCCceEeeeEEeecCcEE--EeeCCCCCCcce
Q 037534           60 LCATCSGSGLYVDSILESQGVIV--KVPCLGCGGTGN   94 (108)
Q Consensus        60 ~C~~C~G~G~~~~~~~~~~G~~~--~~~C~~C~G~G~   94 (108)
                      +|+.|.|.|++.    ....++-  ..+|+.|+|+.+
T Consensus      1609 rC~~C~G~G~i~----i~m~fl~dv~~~C~~C~G~R~ 1641 (1809)
T PRK00635       1609 QCSDCWGLGYQW----IDRAFYALEKRPCPTCSGFRI 1641 (1809)
T ss_pred             CCCCCccCceEE----EecccCCCcccCCCCCCCcCC
Confidence            688888999862    2222222  677888877653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	108
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	7e-04

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1 Length = 248

 Score = 36.4 bits (85), Expect = 7e-04
 Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 11/66 (16%)

Query: 50  CIECKAKG-----VVLCATCSGSGLYVDSILESQGVI-VKVPCLGCGGTGNIM-----CA 98
           C EC+ +G     V  C +C+G G+   +      +   +  C  C GTG+I+     C 
Sbjct: 41  CKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDPKDRCK 100

Query: 99  ECGGRG 104
            C G+ 
Sbjct: 101 SCNGKK 106

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	108
2ctt_A	104	DNAJ homolog subfamily A member 3; ZING finger, be	99.79
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	99.71
1exk_A	79	DNAJ protein; extended beta-hairpin, CXXCXGXG, zin	99.35
1exk_A	79	DNAJ protein; extended beta-hairpin, CXXCXGXG, zin	98.16
2ctt_A	104	DNAJ homolog subfamily A member 3; ZING finger, be	98.05
3lcz_A	53	YCZA, inhibitor of trap, regulated by T-box (Trp)	97.77
2bx9_A	53	Anti-trap, AT, tryptophan RNA-binding attenuator p	97.5
3lcz_A	53	YCZA, inhibitor of trap, regulated by T-box (Trp)	97.48
2bx9_A	53	Anti-trap, AT, tryptophan RNA-binding attenuator p	97.31
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	97.19
3agx_A	181	DNAJ homolog subfamily B member 1; chaperone; 1.85	96.57
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	96.52
3pmq_A	669	Decaheme cytochrome C MTRF; greek KEY, C type cyto	94.93
2q2g_A	180	HSP40 protein, heat shock 40 kDa protein, putative	91.09
1c3g_A	170	Heat shock protein 40; beta sheets, short helices,	86.22

>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.79  E-value=8.4e-20  Score=120.02  Aligned_cols=76  Identities=29%  Similarity=0.684  Sum_probs=67.4

Q ss_pred             CCceEEEEEecchhhccCc--------ccccCCccCcCc------ccCCCCcCCceEeeeEEeecCcEE-EeeCCCCCCc
Q 037534           28 EERIEKSISVSLSEKVIGD--------NPRCIECKAKGV------VLCATCSGSGLYVDSILESQGVIV-KVPCLGCGGT   92 (108)
Q Consensus        28 g~di~~~l~i~l~e~~~G~--------~~~C~~C~G~G~------~~C~~C~G~G~~~~~~~~~~G~~~-~~~C~~C~G~   92 (108)
                      |.|+.++|+|+|+|||+|.        .+.|+.|+|+|.      ..|+.|+|+|++    ...+|+|+ +.+|+.|.|+
T Consensus         1 ~~~~~~~l~vslee~~~G~~~~i~~~~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~~----~~~~G~~~~~~~C~~C~G~   76 (104)
T 2ctt_A            1 GSSGSSGMELTFNQAAKGVNKEFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSGME----TINTGPFVMRSTCRRCGGR   76 (104)
T ss_dssp             CCCCCCCCCCCCSSCCSSSCTTCCSSCCEECSSSSSSSSCTTCCCEECSSSSSSCEE----EEEETTEEEEEECSSSSSS
T ss_pred             CCceEEEEEEEHHHHcCCCEEEEEeeeeeECCCCcCCccCCCCCCccCCCCCCCEEE----EEEeCCEEEEEECCcCCCc
Confidence            5789999999999999998        689999999995      689999999986    33347766 8899999999


Q ss_pred             ceEE---CCCCCCceEeC
Q 037534           93 GNIM---CAECGGRGHCS  107 (108)
Q Consensus        93 G~~~---C~~C~G~G~~~  107 (108)
                      |+++   |+.|+|.|++.
T Consensus        77 G~~i~~~C~~C~G~G~v~   94 (104)
T 2ctt_A           77 GSIIISPCVVCRGAGQAK   94 (104)
T ss_dssp             SEECSSCCSSSSSCSEEC
T ss_pred             ceECCCcCCCCCCeeEEE
Confidence            9997   99999999875

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1

Probab=99.71  E-value=1.4e-17  Score=124.16  Aligned_cols=82  Identities=33%  Similarity=0.678  Sum_probs=69.1

Q ss_pred             CCCCCCceEEEEEecchhhccCc--------ccccCCccCcCc-----ccCCCCcCCceEeeeEEeecCc-E-E-EeeCC
Q 037534           24 KPIPEERIEKSISVSLSEKVIGD--------NPRCIECKAKGV-----VLCATCSGSGLYVDSILESQGV-I-V-KVPCL   87 (108)
Q Consensus        24 ~~~rg~di~~~l~i~l~e~~~G~--------~~~C~~C~G~G~-----~~C~~C~G~G~~~~~~~~~~G~-~-~-~~~C~   87 (108)
                      ++++|+|+.++|.|+|+|+|+|+        .+.|+.|+|+|+     .+|+.|+|+|+++  .....|+ + + +.+|+
T Consensus         7 ~~~~g~d~~~~l~vslee~~~G~~k~i~~~r~~~C~~C~G~G~~~g~~~~C~~C~G~G~~~--~~~~~g~~~~~~~~~C~   84 (248)
T 1nlt_A            7 GPQRGKDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGAVKKCTSCNGQGIKF--VTRQMGPMIQRFQTECD   84 (248)
T ss_dssp             -CCBCCCEEEEEEECTTHHHHCEEEEEEEEEEEECTTTTTCSBSTTTCCCCTTSSSSSCEE--EEEESSSEEEEEECSCT
T ss_pred             CCCCCCCEEEEEEecHHHhcCCceEEEEeeEEEeCCCCcCccCCCCCCccCCCCCCCcEEE--EEEecCceEEEEEEcCC
Confidence            45689999999999999999998        679999999996     7899999999873  2233354 3 2 88999


Q ss_pred             CCCCcceEE-----CCCCCCceEeC
Q 037534           88 GCGGTGNIM-----CAECGGRGHCS  107 (108)
Q Consensus        88 ~C~G~G~~~-----C~~C~G~G~~~  107 (108)
                      .|+|+|+++     |+.|+|+|++.
T Consensus        85 ~C~G~G~~i~~~~~C~~C~G~g~~~  109 (248)
T 1nlt_A           85 VCHGTGDIIDPKDRCKSCNGKKVEN  109 (248)
T ss_dssp             TCSSSSSCCCTTSBCSSSTTSCEEE
T ss_pred             CCCCcCEEeccCCCCcccCCCceEe
Confidence            999999876     99999999864

>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1

Probab=99.35  E-value=8.6e-13  Score=82.05  Aligned_cols=57  Identities=33%  Similarity=0.839  Sum_probs=49.1

Q ss_pred             ccccCCccCcCc------ccCCCCcCCceEeeeEEeecCcEE-EeeCCCCCCcceEE---CCCCCCceEeC
Q 037534           47 NPRCIECKAKGV------VLCATCSGSGLYVDSILESQGVIV-KVPCLGCGGTGNIM---CAECGGRGHCS  107 (108)
Q Consensus        47 ~~~C~~C~G~G~------~~C~~C~G~G~~~~~~~~~~G~~~-~~~C~~C~G~G~~~---C~~C~G~G~~~  107 (108)
                      .+.|+.|+|+|.      ..|+.|+|+|.++   . .+|+++ +.+|+.|.|+|+++   |+.|+|.|++.
T Consensus        11 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~---~-~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~~~   77 (79)
T 1exk_A           11 LEECDVCHGSGAKPGTQPQTCPTCHGSGQVQ---M-RQGFFAVQQTCPHCQGRGTLIKDPCNKCHGHGRVE   77 (79)
T ss_dssp             EEECGGGTTTSBCSSSCCEECTTTTTSSEEE---E-EETTEEEEEECTTTTTSSEECSSBCGGGTTSSEEE
T ss_pred             ceECCCCcccccCCCccCCCCCCCcCeEEEE---E-EcCCCEEeeECcCCCCccEECCCcCCCCCCeEEEe
Confidence            578999999996      5899999999962   2 338876 78999999999996   99999999874

>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1

Probab=98.16  E-value=8e-07  Score=54.65  Aligned_cols=38  Identities=34%  Similarity=0.896  Sum_probs=30.3

Q ss_pred             ccccCCccCcCc-----------ccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceE
Q 037534           47 NPRCIECKAKGV-----------VLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNI   95 (108)
Q Consensus        47 ~~~C~~C~G~G~-----------~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~   95 (108)
                      ...|+.|+|+|.           ..|+.|+|+|.++           ..+|+.|.|.|.+
T Consensus        28 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~G~~   76 (79)
T 1exk_A           28 PQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLI-----------KDPCNKCHGHGRV   76 (79)
T ss_dssp             CEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEEC-----------SSBCGGGTTSSEE
T ss_pred             CCCCCCCcCeEEEEEEcCCCEEeeECcCCCCccEEC-----------CCcCCCCCCeEEE
Confidence            368999999885           2799999999863           5679999998876

>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.05  E-value=2.4e-06  Score=55.39  Aligned_cols=39  Identities=31%  Similarity=0.811  Sum_probs=33.8

Q ss_pred             ccccCCccCcCc-----------ccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceEE
Q 037534           47 NPRCIECKAKGV-----------VLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNIM   96 (108)
Q Consensus        47 ~~~C~~C~G~G~-----------~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~~   96 (108)
                      ...|+.|+|+|.           ..|+.|+|+|.++           ..+|+.|.|.|.+.
T Consensus        45 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i-----------~~~C~~C~G~G~v~   94 (104)
T 2ctt_A           45 VQHCHYCGGSGMETINTGPFVMRSTCRRCGGRGSII-----------ISPCVVCRGAGQAK   94 (104)
T ss_dssp             CEECSSSSSSCEEEEEETTEEEEEECSSSSSSSEEC-----------SSCCSSSSSCSEEC
T ss_pred             CccCCCCCCCEEEEEEeCCEEEEEECCcCCCcceEC-----------CCcCCCCCCeeEEE
Confidence            479999999995           4899999999974           56899999999863

>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A

Probab=97.77  E-value=1.2e-05  Score=46.66  Aligned_cols=25  Identities=32%  Similarity=0.852  Sum_probs=17.7

Q ss_pred             EeeCCCCCCcceEE---CCCCCCceEeC
Q 037534           83 KVPCLGCGGTGNIM---CAECGGRGHCS  107 (108)
Q Consensus        83 ~~~C~~C~G~G~~~---C~~C~G~G~~~  107 (108)
                      +.+|+.|.|+|+++   |+.|+|+|++.
T Consensus         9 ~~~C~~C~GsG~~i~~~C~~C~G~G~v~   36 (53)
T 3lcz_A            9 ETTCPNCNGSGREEPEPCPKCLGKGVIL   36 (53)
T ss_dssp             EEECTTTTTSCEETTEECTTTTTSSEEE
T ss_pred             eccCcCCcccccCCCCcCCCCCCcEEEE
Confidence            56777777777765   77777777653

>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*

Probab=97.50  E-value=5.9e-05  Score=43.73  Aligned_cols=23  Identities=35%  Similarity=0.902  Sum_probs=14.7

Q ss_pred             cccCCccCcCc---ccCCCCcCCceE
Q 037534           48 PRCIECKAKGV---VLCATCSGSGLY   70 (108)
Q Consensus        48 ~~C~~C~G~G~---~~C~~C~G~G~~   70 (108)
                      ..|+.|+|+|.   ..|+.|+|+|.+
T Consensus        10 ~~C~~C~GsG~~~~~~C~~C~G~G~v   35 (53)
T 2bx9_A           10 VACPKCERAGEIEGTPCPACSGKGVI   35 (53)
T ss_dssp             EECTTTTTSSEETTEECTTTTTSSEE
T ss_pred             ccCCCCcceeccCCCCCccCCCCccE
Confidence            45666666665   456666666664

>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A

Probab=97.48  E-value=6.4e-05  Score=43.59  Aligned_cols=23  Identities=30%  Similarity=0.850  Sum_probs=15.4

Q ss_pred             cccCCccCcCc---ccCCCCcCCceE
Q 037534           48 PRCIECKAKGV---VLCATCSGSGLY   70 (108)
Q Consensus        48 ~~C~~C~G~G~---~~C~~C~G~G~~   70 (108)
                      .+|+.|+|+|.   ..|+.|+|+|.+
T Consensus        10 ~~C~~C~GsG~~i~~~C~~C~G~G~v   35 (53)
T 3lcz_A           10 TTCPNCNGSGREEPEPCPKCLGKGVI   35 (53)
T ss_dssp             EECTTTTTSCEETTEECTTTTTSSEE
T ss_pred             ccCcCCcccccCCCCcCCCCCCcEEE
Confidence            46777777776   567777777764

>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*

Probab=97.31  E-value=0.00014  Score=42.10  Aligned_cols=26  Identities=38%  Similarity=0.901  Sum_probs=14.8

Q ss_pred             ccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceE
Q 037534           59 VLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNI   95 (108)
Q Consensus        59 ~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~   95 (108)
                      ..|+.|+|+|.++           ..+|+.|+|.|++
T Consensus        10 ~~C~~C~GsG~~~-----------~~~C~~C~G~G~v   35 (53)
T 2bx9_A           10 VACPKCERAGEIE-----------GTPCPACSGKGVI   35 (53)
T ss_dssp             EECTTTTTSSEET-----------TEECTTTTTSSEE
T ss_pred             ccCCCCcceeccC-----------CCCCccCCCCccE
Confidence            3566666666642           3456666666654

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1

Probab=97.19  E-value=0.00013  Score=53.78  Aligned_cols=41  Identities=27%  Similarity=0.674  Sum_probs=33.1

Q ss_pred             ccccCCccCcCc---------------ccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceEE
Q 037534           47 NPRCIECKAKGV---------------VLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNIM   96 (108)
Q Consensus        47 ~~~C~~C~G~G~---------------~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~~   96 (108)
                      ...|+.|+|+|.               ..|+.|+|+|.++   ..      ..+|+.|.|.|.+.
T Consensus        54 ~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i---~~------~~~C~~C~G~g~~~  109 (248)
T 1nlt_A           54 VKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDII---DP------KDRCKSCNGKKVEN  109 (248)
T ss_dssp             CCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCC---CT------TSBCSSSTTSCEEE
T ss_pred             CccCCCCCCCcEEEEEEecCceEEEEEEcCCCCCCcCEEe---cc------CCCCcccCCCceEe
Confidence            689999999994               4799999999862   10      56899999999763

>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A

Probab=96.57  E-value=0.00055  Score=48.24  Aligned_cols=19  Identities=26%  Similarity=0.349  Sum_probs=14.8

Q ss_pred             CCceEEEEEecchhhccCc
Q 037534           28 EERIEKSISVSLSEKVIGD   46 (108)
Q Consensus        28 g~di~~~l~i~l~e~~~G~   46 (108)
                      ++|+.++|.|+|+|+|+|+
T Consensus         2 ~~d~~~~l~islee~~~G~   20 (181)
T 3agx_A            2 DPPVTHDLRVSLEEIYSGC   20 (181)
T ss_dssp             ----CEEEEECHHHHHHCE
T ss_pred             CCCEEEEEEEEHHHhcCCc
Confidence            5789999999999999998

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A

Probab=96.52  E-value=0.001  Score=50.99  Aligned_cols=36  Identities=17%  Similarity=0.216  Sum_probs=20.6

Q ss_pred             cccchhHhhhCC-------CCCCCCCceEEEEEecchhhccCc
Q 037534           11 RRRSSLESLFCY-------DKPIPEERIEKSISVSLSEKVIGD   46 (108)
Q Consensus        11 ~~~~~f~~~f~~-------~~~~rg~di~~~l~i~l~e~~~G~   46 (108)
                      ++.++|++||+.       ..+++|.|+.++|.|+|+|+|+|.
T Consensus       116 ~f~diF~~~Fg~~g~~~~~~~~~~g~Dl~~~l~vsleea~~G~  158 (329)
T 3lz8_A          116 DFDDIFSSMFGQQAHQRRRQHAARGHDLEIEVAVFLEETLAEQ  158 (329)
T ss_dssp             ---------------------CCCCCCEEEEECCCTTGGGSCE
T ss_pred             chhhhhHhhhcCcCCCCCCCCcCCCCCEEEEEecchhhhhhcc
Confidence            356788888863       125689999999999999999998

>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer membrane, electron trans; HET: HEC; 3.20A {Shewanella oneidensis}

Probab=94.93  E-value=0.0031  Score=52.64  Aligned_cols=63  Identities=14%  Similarity=0.161  Sum_probs=44.1

Q ss_pred             EEEEEecchhhccCc--------ccccCCccCcCc---------ccCCCCcCCceEeee-------EEe-ecCcE-E-Ee
Q 037534           32 EKSISVSLSEKVIGD--------NPRCIECKAKGV---------VLCATCSGSGLYVDS-------ILE-SQGVI-V-KV   84 (108)
Q Consensus        32 ~~~l~i~l~e~~~G~--------~~~C~~C~G~G~---------~~C~~C~G~G~~~~~-------~~~-~~G~~-~-~~   84 (108)
                      .++++|+|+|++.|.        ...|..|+|+|.         ..|+.|+|+...-+.       ++. ..|.+ + ..
T Consensus       168 ~~~l~i~feeA~~G~~k~i~v~~~~~C~tCHGsGA~~Gt~~~~~~tC~tCHGs~~~~~~~~~~~~~iH~iH~G~fP~~~~  247 (669)
T 3pmq_A          168 ITNQHYDWQSSGNMLAYTRNLVSIDTCNSCHSNLAFHGGRYNQVETCVTCHNSKKVSNAADIFPQMIHSKHLTGFPQSIS  247 (669)
T ss_dssp             SCCCEEEEECSSSSCCCCCCCCCSHHHHHHHSSCCTTTTTSCSSSCSTTTSSTTTCCCSSCSHHHHHHHHTTSSCSSCTT
T ss_pred             eEEEEEEhHHhhCCCceEEEeccCCcCCCCCCCCCcCCccCcCCccCCCCCCCcccCCccccccceeeeeeccCCCCccC
Confidence            468889999999998        689999999875         589999999421000       000 01322 2 56


Q ss_pred             eCCCCCCcce
Q 037534           85 PCLGCGGTGN   94 (108)
Q Consensus        85 ~C~~C~G~G~   94 (108)
                      .|..|+..+.
T Consensus       248 ~C~~CH~~~~  257 (669)
T 3pmq_A          248 NCQTCHADNP  257 (669)
T ss_dssp             CCTTTSCCCT
T ss_pred             cchhhcCCcc
Confidence            7999998875

>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}

Probab=91.09  E-value=0.075  Score=37.07  Aligned_cols=20  Identities=25%  Similarity=0.338  Sum_probs=17.6

Q ss_pred             CCCceEEEEEecchhhccCc
Q 037534           27 PEERIEKSISVSLSEKVIGD   46 (108)
Q Consensus        27 rg~di~~~l~i~l~e~~~G~   46 (108)
                      +++|+.++|.|+|+|+|+|+
T Consensus         2 ~g~d~~~~l~islee~~~G~   21 (180)
T 2q2g_A            2 APRSHEVPLLVTLEELYLGK   21 (180)
T ss_dssp             --CEEEEEEEECHHHHHHCE
T ss_pred             CCCCEEEEEEeeHHHhcCCc
Confidence            47899999999999999998

>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A

Probab=86.22  E-value=0.29  Score=33.72  Aligned_cols=18  Identities=28%  Similarity=0.580  Sum_probs=16.9

Q ss_pred             CceEEEEEecchhhccCc
Q 037534           29 ERIEKSISVSLSEKVIGD   46 (108)
Q Consensus        29 ~di~~~l~i~l~e~~~G~   46 (108)
                      +|+.++|.|+|+|+|+|+
T Consensus         1 ~d~~~~l~islee~~~G~   18 (170)
T 1c3g_A            1 ETVQVNLPVSLEDLFVGK   18 (170)
T ss_dssp             CEEEEEEEECHHHHHHTC
T ss_pred             CCEEEEEEeEHHHhhCCc
Confidence            489999999999999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	108
d1exka_	79	Cysteine-rich domain of the chaperone protein DnaJ	99.47
d1nlta3	74	Mitochondrial protein import protein mas5 (Hsp40,	99.45
d1exka_	79	Cysteine-rich domain of the chaperone protein DnaJ	98.3
d1nlta3	74	Mitochondrial protein import protein mas5 (Hsp40,	97.95
d1m1qa_	90	Flavocytochrome c3 (respiratory fumarate reductase	97.0
d1nlta1	74	Mitochondrial protein import protein mas5 (Hsp40,	96.44
d1c3ga1	80	Heat shock protein 40 Sis1 {Baker's yeast (Sacchar	95.53
d1m1qa_	90	Flavocytochrome c3 (respiratory fumarate reductase	93.58
d1nlta2	80	Mitochondrial protein import protein mas5 (Hsp40,	85.33
d1c3ga2	90	Heat shock protein 40 Sis1 {Baker's yeast (Sacchar	80.72

>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Cysteine-rich domain of the chaperone protein DnaJ
species: Escherichia coli [TaxId: 562]

Probab=99.47  E-value=2e-14  Score=88.84  Aligned_cols=57  Identities=33%  Similarity=0.810  Sum_probs=49.9

Q ss_pred             ccccCCccCcCc------ccCCCCcCCceEeeeEEeecCcEE-EeeCCCCCCcceEE---CCCCCCceEeC
Q 037534           47 NPRCIECKAKGV------VLCATCSGSGLYVDSILESQGVIV-KVPCLGCGGTGNIM---CAECGGRGHCS  107 (108)
Q Consensus        47 ~~~C~~C~G~G~------~~C~~C~G~G~~~~~~~~~~G~~~-~~~C~~C~G~G~~~---C~~C~G~G~~~  107 (108)
                      ++.|+.|+|+|.      ..|+.|+|+|++    +...|+++ +++|+.|+|+|+++   |+.|+|+|++.
T Consensus        11 ~~~C~~C~G~G~~~g~~~~~C~~C~G~G~v----~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~   77 (79)
T d1exka_          11 LEECDVCHGSGAKPGTQPQTCPTCHGSGQV----QMRQGFFAVQQTCPHCQGRGTLIKDPCNKCHGHGRVE   77 (79)
T ss_dssp             EEECGGGTTTSBCSSSCCEECTTTTTSSEE----EEEETTEEEEEECTTTTTSSEECSSBCGGGTTSSEEE
T ss_pred             eccCCCCcCcccCCCccceeCCCccceeEE----EEecccceeeEECcccCcceeECCCCCCCCCCceEee
Confidence            678999999996      679999999986    55567765 88999999999998   99999999985

>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.45  E-value=3.6e-14  Score=86.77  Aligned_cols=59  Identities=31%  Similarity=0.756  Sum_probs=47.9

Q ss_pred             ccccCCccCcCc-----ccCCCCcCCceEeeeEEeecCc--EE-EeeCCCCCCcceEE-----CCCCCCceEeC
Q 037534           47 NPRCIECKAKGV-----VLCATCSGSGLYVDSILESQGV--IV-KVPCLGCGGTGNIM-----CAECGGRGHCS  107 (108)
Q Consensus        47 ~~~C~~C~G~G~-----~~C~~C~G~G~~~~~~~~~~G~--~~-~~~C~~C~G~G~~~-----C~~C~G~G~~~  107 (108)
                      +++|+.|+|+|.     .+|+.|+|+|+++  .....++  ++ +.+|+.|.|+|+++     |+.|+|+|+++
T Consensus         2 ~v~C~~C~G~G~~~~~~~~C~~C~G~G~~~--~~~~~g~~~~~~~~~C~~C~G~G~~i~~~~~C~~C~G~g~v~   73 (74)
T d1nlta3           2 QILCKECEGRGGKKGAVKKCTSCNGQGIKF--VTRQMGPMIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVEN   73 (74)
T ss_dssp             EEECTTTTTCSBSTTTCCCCTTSSSSSCEE--EEEESSSEEEEEECSCTTCSSSSSCCCTTSBCSSSTTSCEEE
T ss_pred             ccCCcCCcccccCCCCCCCCCCCcceeeee--EEEEecCcEEEEEEECccCccceEEeCCCCCCCCCCCeeEeC
Confidence            468999999996     6799999999973  2333343  33 77899999999885     99999999875

>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Cysteine-rich domain of the chaperone protein DnaJ
species: Escherichia coli [TaxId: 562]

Probab=98.30  E-value=1.3e-07  Score=57.48  Aligned_cols=39  Identities=33%  Similarity=0.856  Sum_probs=33.5

Q ss_pred             ccccCCccCcCc-----------ccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceEE
Q 037534           47 NPRCIECKAKGV-----------VLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNIM   96 (108)
Q Consensus        47 ~~~C~~C~G~G~-----------~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~~   96 (108)
                      ...|+.|+|+|.           ..|+.|+|+|.++           ..+|+.|.|+|++.
T Consensus        28 ~~~C~~C~G~G~v~~~~g~~~~~~~C~~C~G~G~~i-----------~~~C~~C~G~G~v~   77 (79)
T d1exka_          28 PQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLI-----------KDPCNKCHGHGRVE   77 (79)
T ss_dssp             CEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEEC-----------SSBCGGGTTSSEEE
T ss_pred             ceeCCCccceeEEEEecccceeeEECcccCcceeEC-----------CCCCCCCCCceEee
Confidence            577999999996           5799999999974           56899999999873

>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.95  E-value=1.8e-06  Score=51.66  Aligned_cols=40  Identities=28%  Similarity=0.717  Sum_probs=32.5

Q ss_pred             ccccCCccCcCc---------------ccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceE
Q 037534           47 NPRCIECKAKGV---------------VLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNI   95 (108)
Q Consensus        47 ~~~C~~C~G~G~---------------~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~   95 (108)
                      ...|+.|+|+|.               ..|+.|+|+|.++   . .     ..+|+.|.|+|.+
T Consensus        18 ~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i---~-~-----~~~C~~C~G~g~v   72 (74)
T d1nlta3          18 VKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDII---D-P-----KDRCKSCNGKKVE   72 (74)
T ss_dssp             CCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCC---C-T-----TSBCSSSTTSCEE
T ss_pred             CCCCCCCcceeeeeEEEEecCcEEEEEEECccCccceEEe---C-C-----CCCCCCCCCeeEe
Confidence            567999999996               5799999999862   1 0     4589999999975

>d1m1qa_ a.138.1.3 (A:) Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain {Shewanella oneidensis [TaxId: 70863]}

class: All alpha proteins
fold: Multiheme cytochromes
superfamily: Multiheme cytochromes
family: Di-heme elbow motif
domain: Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain
species: Shewanella oneidensis [TaxId: 70863]

Probab=97.00  E-value=3.5e-06  Score=51.35  Aligned_cols=60  Identities=22%  Similarity=0.523  Sum_probs=42.2

Q ss_pred             ccccCCccCcCc---------ccCCCCcCCceEeeeEEeec-CcEEEeeCCCCCCcceEE---CCCCCCceEe
Q 037534           47 NPRCIECKAKGV---------VLCATCSGSGLYVDSILESQ-GVIVKVPCLGCGGTGNIM---CAECGGRGHC  106 (108)
Q Consensus        47 ~~~C~~C~G~G~---------~~C~~C~G~G~~~~~~~~~~-G~~~~~~C~~C~G~G~~~---C~~C~G~G~~  106 (108)
                      ...|..|++.+.         ..|..|+|+|.......... +.+.-..|..|.|.|..+   |..|++.|++
T Consensus        11 ~~~C~~CH~~~~~~~~~~~~~~~C~~CHg~~~~~~~~~~~h~~~~~c~~CH~~H~~~~~~~~~C~~CH~~gr~   83 (90)
T d1m1qa_          11 SGGCESCHKDGTPSADGAFEFAQCQSCHGKLSEMDAVHKPHDGNLVCADCHAVHDMNVGQKPTCESCHDDGRT   83 (90)
T ss_dssp             TTCGGGTSGGGCCCSSSHHHHHHHHHHHCCGGGSCTTTGGGTTTCCGGGTCCTTTSBTTCCCCSTTTCSSCCC
T ss_pred             CCCCCCcCCCCccccCCCCCCCcCcccCCCceeEeeccccccCccccccCccccCCCCcCCCccccccCCCcc
Confidence            346999999875         46999999997421111111 223367899999998765   9999999875

>d1nlta1 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.44  E-value=0.00062  Score=39.92  Aligned_cols=22  Identities=36%  Similarity=0.428  Sum_probs=21.0

Q ss_pred             CCCCCceEEEEEecchhhccCc
Q 037534           25 PIPEERIEKSISVSLSEKVIGD   46 (108)
Q Consensus        25 ~~rg~di~~~l~i~l~e~~~G~   46 (108)
                      |++++|+.+.|.|+|+|+|+|.
T Consensus         1 Prkg~di~~~l~isleea~~G~   22 (74)
T d1nlta1           1 PQRGKDIKHEISASLEELYKGR   22 (74)
T ss_dssp             CCBCCCEEEEEEECTTHHHHCE
T ss_pred             CCCCCCEEEEEEecHHHHHhhc
Confidence            6789999999999999999998

>d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.53  E-value=0.0016  Score=38.40  Aligned_cols=18  Identities=28%  Similarity=0.580  Sum_probs=16.8

Q ss_pred             CceEEEEEecchhhccCc
Q 037534           29 ERIEKSISVSLSEKVIGD   46 (108)
Q Consensus        29 ~di~~~l~i~l~e~~~G~   46 (108)
                      +|+.++|.|||||+|.|+
T Consensus         1 e~v~~~l~vtLee~~~G~   18 (80)
T d1c3ga1           1 ETVQVNLPVSLEDLFVGK   18 (80)
T ss_dssp             CEEEEEEEECHHHHHHTC
T ss_pred             CCEEEEeEEEHHHHhCCC
Confidence            478999999999999998

>d1m1qa_ a.138.1.3 (A:) Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain {Shewanella oneidensis [TaxId: 70863]}

class: All alpha proteins
fold: Multiheme cytochromes
superfamily: Multiheme cytochromes
family: Di-heme elbow motif
domain: Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain
species: Shewanella oneidensis [TaxId: 70863]

Probab=93.58  E-value=0.0033  Score=37.39  Aligned_cols=38  Identities=21%  Similarity=0.427  Sum_probs=26.1

Q ss_pred             ccccCCccCcCc---------------ccCCCCcCCceEeeeEEeecCcEEEeeCCCCCCcceE
Q 037534           47 NPRCIECKAKGV---------------VLCATCSGSGLYVDSILESQGVIVKVPCLGCGGTGNI   95 (108)
Q Consensus        47 ~~~C~~C~G~G~---------------~~C~~C~G~G~~~~~~~~~~G~~~~~~C~~C~G~G~~   95 (108)
                      ...|..|+|.+.               ..|..|+|.|..+           ...|..|.+.|++
T Consensus        31 ~~~C~~CHg~~~~~~~~~~~h~~~~~c~~CH~~H~~~~~~-----------~~~C~~CH~~gr~   83 (90)
T d1m1qa_          31 FAQCQSCHGKLSEMDAVHKPHDGNLVCADCHAVHDMNVGQ-----------KPTCESCHDDGRT   83 (90)
T ss_dssp             HHHHHHHHCCGGGSCTTTGGGTTTCCGGGTCCTTTSBTTC-----------CCCSTTTCSSCCC
T ss_pred             CCcCcccCCCceeEeeccccccCccccccCccccCCCCcC-----------CCccccccCCCcc
Confidence            356888887775               5677777777632           5578888887753

>d1nlta2 b.4.1.1 (A:258-337) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.33  E-value=0.12  Score=29.76  Aligned_cols=22  Identities=9%  Similarity=0.158  Sum_probs=20.1

Q ss_pred             CCCCCceEEEEEecchhhccCc
Q 037534           25 PIPEERIEKSISVSLSEKVIGD   46 (108)
Q Consensus        25 ~~rg~di~~~l~i~l~e~~~G~   46 (108)
                      .++|.|+.++++|+|.||+.|.
T Consensus         3 ~R~G~dL~~~~~I~~~eal~G~   24 (80)
T d1nlta2           3 KRDGDDLVYEAEIDLLTAIAGG   24 (80)
T ss_dssp             EEETTEEEEEEEEEHHHHHHCB
T ss_pred             EEeCCEEEEEEEeCHHHHhCCC
Confidence            3568999999999999999998

>d1c3ga2 b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.72  E-value=0.18  Score=29.71  Aligned_cols=22  Identities=14%  Similarity=0.261  Sum_probs=20.2

Q ss_pred             CCCCCceEEEEEecchhhccCc
Q 037534           25 PIPEERIEKSISVSLSEKVIGD   46 (108)
Q Consensus        25 ~~rg~di~~~l~i~l~e~~~G~   46 (108)
                      .++|.|+.+++.|+|.||+.|.
T Consensus         3 ~R~G~DL~~~~~I~~~eal~G~   24 (90)
T d1c3ga2           3 KRDGDDLIYTLPLSFKESLLGF   24 (90)
T ss_dssp             EEETTEEEEEECCBHHHHHHCE
T ss_pred             eEeCCeEEEEEEeCHHHHhcCC
Confidence            3578999999999999999998