Citrus Sinensis ID: 037542

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------13
SGDTFYSVSTNKYQNLTTYQSVEVVNPAFVPTKLEVGDVFIFPVFCKCPDQTQLRNRVNYLVSYVLQPSENLSSVASRFGIETQAIIDVNGNNIRPFDTLFVPVARLPELKQPAVAPSSAPPSRKTERK
ccccHHHHHHcccccccHHHHHHHHcccccccccccccEEEEccccccccccccccccccEEEEEEcccccHHHHHHHHcccHHHHHHHHccccccccEEEEccccccccccccccccccccccccccc
cccHHHHHHHHHHcccccHHHHHHHcccccccccccccEEEEEcccccccccccccccEEEEEEEEcccccHHHHHHHHcccHHHHHHHcccccccccEEEEEcccccccccccccccccccccccccc
sgdtfysvstnkyqnlttyqsvevvnpafvptklevgdvfifpvfckcpdqtqlrnRVNYLVSYVLqpsenlssvaSRFGIETQAiidvngnnirpfdtlfvpvarlpelkqpavapssappsrkterk
sgdtfysvstnkyqnlttyqsvEVVNPAFVPTKLEVGDVFIFPVFCKCPDQTQLRNRVNYLVSYVLQPSENLSSVASRFGIETQAIIDVNGNNIRPFDTLFVPVARlpelkqpavapssappsrkterk
SGDTFYSVSTNKYQNLTTYQSVEVVNPAFVPTKLEVGDVFIFPVFCKCPDQTQLRNRVNYLVSYVLQPSENLSSVASRFGIETQAIIDVNGNNIRPFDTLFVPVARLPELKQpavapssappsRKTERK
****FYSVSTNKYQNLTTYQSVEVVNPAFVPTKLEVGDVFIFPVFCKCPDQTQLRNRVNYLVSYVLQPSENLSSVASRFGIETQAIIDVNGNNIRPFDTLFVPVARL**********************
SGDTFYSVSTNKYQNLTTYQSVEVVNPAFVPTKLEVGDVFIFPVFCKC*********VNYLVSYVLQPSENLSSVASRFGIETQAIIDVNGNNIRPFDTLFVPVAR***********************
********STNKYQNLTTYQSVEVVNPAFVPTKLEVGDVFIFPVFCKCPDQTQLRNRVNYLVSYVLQPSENLSSVASRFGIETQAIIDVNGNNIRPFDTLFVPVARLPELKQ*****************
*GDTFYSVSTNKYQNLTTYQSVEVVNPAFVPTKLEVGDVFIFPVFCKCPDQTQLRNRVNYLVSYVLQPSENLSSVASRFGIETQAIIDVNGNNIRPFDTLFVPVARLPEL*******************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
SGDTFYSVSTNKYQNLTTYQSVEVVNPAFVPTKLEVGDVFIFPVFCKCPDQTQLRNRVNYLVSYVLQPSENLSSVASRFGIETQAIIDVNGNNIRPFDTLFVPVARLPELKQPAVAPSSAPPSRKTERK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query129 2.2.26 [Sep-21-2011]
O64825 612 LysM domain receptor-like yes no 0.782 0.165 0.25 4e-06
O22808 664 Protein LYK5 OS=Arabidops no no 0.813 0.158 0.284 1e-05
O23006 350 LysM domain-containing GP no no 0.666 0.245 0.292 2e-05
F4IB81 651 LysM domain receptor-like no no 0.519 0.102 0.342 2e-05
Q9SGI7 654 Protein LYK2 OS=Arabidops no no 0.813 0.160 0.330 2e-05
Q6NPN4 423 LysM domain-containing GP no no 0.782 0.238 0.285 8e-05
A8R7E6 617 Chitin elicitor receptor no no 0.635 0.132 0.309 0.0005
>sp|O64825|LYK4_ARATH LysM domain receptor-like kinase 4 OS=Arabidopsis thaliana GN=LYK4 PE=1 SV=1 Back     alignment and function desciption
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 59/116 (50%), Gaps = 15/116 (12%)

Query: 3   DTFYSVSTNKYQNLTTYQSV----EVVNPAFVPTKLEVGDVFIFPVFCKCPDQTQL-RNR 57
           D++++++ +  Q L+T Q++     V + +  P     G   + P+ C CP   Q+  + 
Sbjct: 127 DSYFAIANDTLQGLSTCQALAKQNNVSSQSLFP-----GMRIVVPIRCACPTAKQINEDG 181

Query: 58  VNYLVSYVLQPSENLSSVASRFGIETQAIIDVN-----GNNIRPFDTLFVPVARLP 108
           V YL+SY +   + ++ ++ RFG+ET   +  N      + + PF T+ +P+   P
Sbjct: 182 VKYLMSYTVVFEDTIAIISDRFGVETSKTLKANEMSFENSEVFPFTTILIPLVNPP 237
Lysin motif (LysM) receptor kinase that functions as a cell surface receptor in chitin elicitor (chitooligosaccharides) signaling leading to innate immunity. Recognizes microbe-derived N-acetylglucosamine (NAG)-containing ligands. Involved in the resistance to the pathogenic fungus Alternaria brassicicola and to the bacterial pathogen the bacterial pathogen Pseudomonas syringae pv tomato DC3000, probably by sensing microbe-associated molecular pattern (MAMP) and pathogen-associated molecular patterns (PAMP). May play a role in detecting peptidoglycans (e.g. PGNs) during bacterial growth.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1
>sp|O22808|LYK5_ARATH Protein LYK5 OS=Arabidopsis thaliana GN=LYK5 PE=1 SV=1 Back     alignment and function description
>sp|O23006|LYM2_ARATH LysM domain-containing GPI-anchored protein 2 OS=Arabidopsis thaliana GN=LYM2 PE=1 SV=1 Back     alignment and function description
>sp|F4IB81|LYK3_ARATH LysM domain receptor-like kinase 3 OS=Arabidopsis thaliana GN=LYK3 PE=2 SV=1 Back     alignment and function description
>sp|Q9SGI7|LYK2_ARATH Protein LYK2 OS=Arabidopsis thaliana GN=LYK2 PE=2 SV=1 Back     alignment and function description
>sp|Q6NPN4|LYM3_ARATH LysM domain-containing GPI-anchored protein 2 OS=Arabidopsis thaliana GN=LYM3 PE=1 SV=1 Back     alignment and function description
>sp|A8R7E6|CERK1_ARATH Chitin elicitor receptor kinase 1 OS=Arabidopsis thaliana GN=CERK1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query129
224099871 524 predicted protein [Populus trichocarpa] 1.0 0.246 0.684 1e-48
224071527 275 predicted protein [Populus trichocarpa] 1.0 0.469 0.684 4e-46
255551969 615 serine-threonine protein kinase, plant-t 0.968 0.203 0.685 5e-45
224111082 461 predicted protein [Populus trichocarpa] 0.976 0.273 0.685 1e-44
225432878 622 PREDICTED: probable LRR receptor-like se 1.0 0.207 0.643 8e-43
297737149 595 unnamed protein product [Vitis vinifera] 1.0 0.216 0.643 1e-42
147771926 591 hypothetical protein VITISV_032728 [Viti 1.0 0.218 0.635 2e-42
449433287 640 PREDICTED: proline-rich receptor-like pr 0.922 0.185 0.579 2e-36
449516043 631 PREDICTED: proline-rich receptor-like pr 0.922 0.188 0.579 2e-36
357487233 660 Cysteine-rich receptor-like protein kina 0.906 0.177 0.541 3e-30
>gi|224099871|ref|XP_002311653.1| predicted protein [Populus trichocarpa] gi|222851473|gb|EEE89020.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  197 bits (500), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 89/130 (68%), Positives = 108/130 (83%), Gaps = 1/130 (0%)

Query: 1   SGDTFYSVSTNKYQNLTTYQSVEVVNPAFVPTKLEVGDVFIFPVFCKCPDQTQLRNRVNY 60
           +G+TFY VST  +QNLTTYQSVE+ NP  +P  L++G   IFP+FCKCP QTQL+N+VNY
Sbjct: 23  AGNTFYIVSTKYFQNLTTYQSVELFNPTLIPELLDIGVEVIFPIFCKCPHQTQLQNKVNY 82

Query: 61  LVSYVLQPSENLSSVASRFGIETQAIIDVNGNNIRPFDTLFVPVARLPELKQPA-VAPSS 119
           LVSYV QPS+NLSSVAS FG+ETQ+I+DVNGNNI+P+DT+FVPV +LP+L QP  V PS 
Sbjct: 83  LVSYVFQPSDNLSSVASTFGVETQSIVDVNGNNIQPYDTIFVPVNQLPQLAQPTVVVPSG 142

Query: 120 APPSRKTERK 129
           APP  KTERK
Sbjct: 143 APPPEKTERK 152

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224071527|ref|XP_002335938.1| predicted protein [Populus trichocarpa] gi|222836450|gb|EEE74857.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255551969|ref|XP_002517029.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223543664|gb|EEF45192.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224111082|ref|XP_002315740.1| predicted protein [Populus trichocarpa] gi|222864780|gb|EEF01911.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225432878|ref|XP_002280070.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g48740-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297737149|emb|CBI26350.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147771926|emb|CAN66762.1| hypothetical protein VITISV_032728 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449433287|ref|XP_004134429.1| PREDICTED: proline-rich receptor-like protein kinase PERK8-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449516043|ref|XP_004165057.1| PREDICTED: proline-rich receptor-like protein kinase PERK8-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357487233|ref|XP_003613904.1| Cysteine-rich receptor-like protein kinase [Medicago truncatula] gi|355515239|gb|AES96862.1| Cysteine-rich receptor-like protein kinase [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query129
TAIR|locus:2049029 612 LYK4 "LysM-containing receptor 0.813 0.171 0.258 1.3e-07
TAIR|locus:2082359 654 LYK2 "LysM-containing receptor 0.829 0.163 0.339 2.9e-07
TAIR|locus:2050987 664 LYK5 "LysM-containing receptor 0.821 0.159 0.297 1.3e-06
TAIR|locus:2827686 350 LYP1 "LysM-containing receptor 0.666 0.245 0.292 1.3e-06
TAIR|locus:2089860 617 CERK1 "chitin elicitor recepto 0.767 0.160 0.300 3.2e-06
TAIR|locus:2204720 423 LYM3 "lysin-motif (LysM) domai 0.798 0.243 0.280 8.1e-06
UNIPROTKB|D7UPN3 605 CERK1 "Chitin elicitor recepto 0.658 0.140 0.314 3.6e-05
TAIR|locus:2195814 651 LYK3 "LysM-containing receptor 0.387 0.076 0.407 8.4e-05
TAIR|locus:2201143 416 LYP2 "LysM-containing receptor 0.790 0.245 0.254 0.00026
UNIPROTKB|Q8H8C7 356 CEBIP "Chitin elicitor-binding 0.658 0.238 0.261 0.00026
TAIR|locus:2049029 LYK4 "LysM-containing receptor-like kinase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 131 (51.2 bits), Expect = 1.3e-07, P = 1.3e-07
 Identities = 29/112 (25%), Positives = 58/112 (51%)

Query:     3 DTFYSVSTNKYQNLTTYQSVEVVNPAFVPTKLEVGDVFIFPVFCKCPDQTQLR-NRVNYL 61
             D++++++ +  Q L+T Q++   N     + L  G   + P+ C CP   Q+  + V YL
Sbjct:   127 DSYFAIANDTLQGLSTCQALAKQNNVSSQS-LFPGMRIVVPIRCACPTAKQINEDGVKYL 185

Query:    62 VSYVLQPSENLSSVASRFGIETQAIIDVN-----GNNIRPFDTLFVPVARLP 108
             +SY +   + ++ ++ RFG+ET   +  N      + + PF T+ +P+   P
Sbjct:   186 MSYTVVFEDTIAIISDRFGVETSKTLKANEMSFENSEVFPFTTILIPLVNPP 237
GO:0009507 "chloroplast" evidence=ISM
GO:0016301 "kinase activity" evidence=ISS
GO:0005886 "plasma membrane" evidence=IDA
GO:0008061 "chitin binding" evidence=IDA
GO:0045087 "innate immune response" evidence=IMP
GO:0071219 "cellular response to molecule of bacterial origin" evidence=IEP
GO:0071323 "cellular response to chitin" evidence=IEP
TAIR|locus:2082359 LYK2 "LysM-containing receptor-like kinase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050987 LYK5 "LysM-containing receptor-like kinase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2827686 LYP1 "LysM-containing receptor protein 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089860 CERK1 "chitin elicitor receptor kinase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2204720 LYM3 "lysin-motif (LysM) domain protein 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|D7UPN3 CERK1 "Chitin elicitor receptor kinase 1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2195814 LYK3 "LysM-containing receptor-like kinase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2201143 LYP2 "LysM-containing receptor protein 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q8H8C7 CEBIP "Chitin elicitor-binding protein" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query129
pfam0147643 pfam01476, LysM, LysM domain 1e-05
smart0025744 smart00257, LysM, Lysin motif 2e-04
cd0011845 cd00118, LysM, Lysine Motif is a small domain invo 2e-04
>gnl|CDD|144899 pfam01476, LysM, LysM domain Back     alignment and domain information 
 Score = 39.7 bits (94), Expect = 1e-05
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 3/43 (6%)

Query: 64  YVLQPSENLSSVASRFGIETQAIIDVNG---NNIRPFDTLFVP 103
           Y ++  + LSS+A R+GI  + + ++NG    N+     L +P
Sbjct: 1   YTVKKGDTLSSIAKRYGITVEELAELNGLSSPNLYVGQKLKIP 43

The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. The structure of this domain is known. Length = 43
>gnl|CDD|197609 smart00257, LysM, Lysin motif Back     alignment and domain information
>gnl|CDD|212030 cd00118, LysM, Lysine Motif is a small domain involved in binding peptidoglycan Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 129
PRK06347592 autolysin; Reviewed 99.86
PRK10783456 mltD membrane-bound lytic murein transglycosylase 99.85
PRK06347592 autolysin; Reviewed 99.82
PRK13914 481 invasion associated secreted endopeptidase; Provis 99.74
PF0147644 LysM: LysM domain; InterPro: IPR018392 This domain 99.55
COG1388124 LytE FOG: LysM repeat [Cell envelope biogenesis, o 99.52
PRK10783456 mltD membrane-bound lytic murein transglycosylase 99.51
PRK14125103 cell division suppressor protein YneA; Provisional 99.3
TIGR0289944 spore_safA spore coat assembly protein SafA. in wh 99.23
cd0011846 LysM Lysin domain, found in a variety of enzymes i 99.21
PF0147644 LysM: LysM domain; InterPro: IPR018392 This domain 99.17
TIGR02907338 spore_VI_D stage VI sporulation protein D. SpoVID, 99.08
PRK10871 319 nlpD lipoprotein NlpD; Provisional 99.07
COG3858 423 Predicted glycosyl hydrolase [General function pre 99.07
TIGR0289944 spore_safA spore coat assembly protein SafA. in wh 99.02
PRK13914 481 invasion associated secreted endopeptidase; Provis 98.95
smart0025744 LysM Lysin motif. 98.92
PRK14125103 cell division suppressor protein YneA; Provisional 98.82
cd0011846 LysM Lysin domain, found in a variety of enzymes i 98.8
PRK10871 319 nlpD lipoprotein NlpD; Provisional 98.7
PRK11198147 LysM domain/BON superfamily protein; Provisional 98.69
smart0025744 LysM Lysin motif. 98.44
PRK11198147 LysM domain/BON superfamily protein; Provisional 98.42
COG1388124 LytE FOG: LysM repeat [Cell envelope biogenesis, o 98.23
PF0422585 OapA: Opacity-associated protein A LysM-like domai 98.17
TIGR0350574 FimV_core FimV N-terminal domain. This region is f 98.12
TIGR0350574 FimV_core FimV N-terminal domain. This region is f 98.0
PRK10190 310 L,D-transpeptidase; Provisional 97.75
PRK10260 306 L,D-transpeptidase; Provisional 97.75
COG1652269 XkdP Uncharacterized protein containing LysM domai 97.61
PF0548960 Phage_tail_X: Phage Tail Protein X; InterPro: IPR0 97.46
COG1652269 XkdP Uncharacterized protein containing LysM domai 97.35
PRK10260 306 L,D-transpeptidase; Provisional 97.22
PRK10190 310 L,D-transpeptidase; Provisional 97.22
COG3170 755 FimV Tfp pilus assembly protein FimV [Cell motilit 97.04
PF0548960 Phage_tail_X: Phage Tail Protein X; InterPro: IPR0 96.99
PRK11649 439 putative peptidase; Provisional 96.76
COG3061242 OapA Cell envelope opacity-associated protein A [C 96.48
PF0422585 OapA: Opacity-associated protein A LysM-like domai 96.08
PRK11649 439 putative peptidase; Provisional 95.62
COG3858 423 Predicted glycosyl hydrolase [General function pre 95.4
COG0739 277 NlpD Membrane proteins related to metalloendopepti 91.77
COG4784479 Putative Zn-dependent protease [General function p 90.82
PF1351852 HTH_28: Helix-turn-helix domain 90.56
COG4254 339 Uncharacterized protein conserved in bacteria [Fun 89.3
COG3170 755 FimV Tfp pilus assembly protein FimV [Cell motilit 89.29
KOG2850 186 consensus Predicted peptidoglycan-binding protein, 88.98
PF0279645 HTH_7: Helix-turn-helix domain of resolvase; Inter 88.83
COG500470 P2-like prophage tail protein X [General function 87.25
COG3061242 OapA Cell envelope opacity-associated protein A [C 85.82
PF0152776 HTH_Tnp_1: Transposase; InterPro: IPR002514 Transp 84.37
COG2963116 Transposase and inactivated derivatives [DNA repli 81.46
PF1338450 HTH_23: Homeodomain-like domain; PDB: 2X48_C. 81.37
COG500470 P2-like prophage tail protein X [General function 80.81
PF0421853 CENP-B_N: CENP-B N-terminal DNA-binding domain; In 80.16
>PRK06347 autolysin; Reviewed Back     alignment and domain information 
Probab=99.86  E-value=2e-21  Score=160.45  Aligned_cols=99  Identities=13%  Similarity=0.176  Sum_probs=81.0

Q ss_pred             CCCcHHHHHHhhCCCCCCHHHHHHhCCCCCCCCCCCCCEEEECCCCCCCCccc-----ccccccceEEEEecCCCCHHHH
Q 037542            1 SGDTFYSVSTNKYQNLTTYQSVEVVNPAFVPTKLEVGDVFIFPVFCKCPDQTQ-----LRNRVNYLVSYVLQPSENLSSV   75 (129)
Q Consensus         1 ~GDTl~~IA~~~~~~lts~~~l~~~N~~~~~~~l~~Gq~L~IP~~~~~~~~~~-----~~~~~~~~~~y~V~~GDTl~~I   75 (129)
                      +|||||.||++|++   ++++|+++|++. .+.|++||.|+||..........     ..........|+|++|||||+|
T Consensus       486 ~GDTL~sIAkkygV---Sv~~L~~~N~l~-s~~L~~GQ~L~Ip~~~~~s~~~t~~~s~~~~~~~~~~~Y~Vk~GDTL~sI  561 (592)
T PRK06347        486 KGDSLWRIANNNKV---TIANLKSWNNLK-SDFIYPGQKLKVSAGSTTNNTNTAKPSTNKPSNSTVKTYTVKKGDSLWAI  561 (592)
T ss_pred             CCCCHHHHHHHHCC---CHHHHHHhcCCC-cccccCCcEEEEecCcccccccccCCccCCccCccceeeecCCCCcHHHH
Confidence            59999999999999   999999999985 57899999999997542211000     0011122468999999999999


Q ss_pred             HHHhCCCHHHHHhhcC---CCCCCCCEEEEc
Q 037542           76 ASRFGIETQAIIDVNG---NNIRPFDTLFVP  103 (129)
Q Consensus        76 A~~~~vs~~~l~~~N~---~~l~~Gq~L~IP  103 (129)
                      |++||+++++|++||+   +.|++||+|+|+
T Consensus       562 A~KygvSv~~L~~~N~L~~~~L~~GQ~L~I~  592 (592)
T PRK06347        562 SRQYKTTVDNIKAWNKLTSNMIHVGQKLTIK  592 (592)
T ss_pred             HHHhCCCHHHHHHhcCCCcccCCCCCEEecC
Confidence            9999999999999999   779999999985

>PRK10783 mltD membrane-bound lytic murein transglycosylase D; Provisional Back     alignment and domain information
>PRK06347 autolysin; Reviewed Back     alignment and domain information
>PRK13914 invasion associated secreted endopeptidase; Provisional Back     alignment and domain information
>PF01476 LysM: LysM domain; InterPro: IPR018392 This domain is about 40 residues long and is found in a variety of enzymes involved in bacterial cell wall degradation [] Back     alignment and domain information
>COG1388 LytE FOG: LysM repeat [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK10783 mltD membrane-bound lytic murein transglycosylase D; Provisional Back     alignment and domain information
>PRK14125 cell division suppressor protein YneA; Provisional Back     alignment and domain information
>TIGR02899 spore_safA spore coat assembly protein SafA Back     alignment and domain information
>cd00118 LysM Lysin domain, found in a variety of enzymes involved in bacterial cell wall degradation Back     alignment and domain information
>PF01476 LysM: LysM domain; InterPro: IPR018392 This domain is about 40 residues long and is found in a variety of enzymes involved in bacterial cell wall degradation [] Back     alignment and domain information
>TIGR02907 spore_VI_D stage VI sporulation protein D Back     alignment and domain information
>PRK10871 nlpD lipoprotein NlpD; Provisional Back     alignment and domain information
>COG3858 Predicted glycosyl hydrolase [General function prediction only] Back     alignment and domain information
>TIGR02899 spore_safA spore coat assembly protein SafA Back     alignment and domain information
>PRK13914 invasion associated secreted endopeptidase; Provisional Back     alignment and domain information
>smart00257 LysM Lysin motif Back     alignment and domain information
>PRK14125 cell division suppressor protein YneA; Provisional Back     alignment and domain information
>cd00118 LysM Lysin domain, found in a variety of enzymes involved in bacterial cell wall degradation Back     alignment and domain information
>PRK10871 nlpD lipoprotein NlpD; Provisional Back     alignment and domain information
>PRK11198 LysM domain/BON superfamily protein; Provisional Back     alignment and domain information
>smart00257 LysM Lysin motif Back     alignment and domain information
>PRK11198 LysM domain/BON superfamily protein; Provisional Back     alignment and domain information
>COG1388 LytE FOG: LysM repeat [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF04225 OapA: Opacity-associated protein A LysM-like domain; InterPro: IPR007340 This entry includes the Haemophilus influenzae opacity-associated protein Back     alignment and domain information
>TIGR03505 FimV_core FimV N-terminal domain Back     alignment and domain information
>TIGR03505 FimV_core FimV N-terminal domain Back     alignment and domain information
>PRK10190 L,D-transpeptidase; Provisional Back     alignment and domain information
>PRK10260 L,D-transpeptidase; Provisional Back     alignment and domain information
>COG1652 XkdP Uncharacterized protein containing LysM domain [Function unknown] Back     alignment and domain information
>PF05489 Phage_tail_X: Phage Tail Protein X; InterPro: IPR008861 This entry is represented by Bacteriophage P2, GpX Back     alignment and domain information
>COG1652 XkdP Uncharacterized protein containing LysM domain [Function unknown] Back     alignment and domain information
>PRK10260 L,D-transpeptidase; Provisional Back     alignment and domain information
>PRK10190 L,D-transpeptidase; Provisional Back     alignment and domain information
>COG3170 FimV Tfp pilus assembly protein FimV [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>PF05489 Phage_tail_X: Phage Tail Protein X; InterPro: IPR008861 This entry is represented by Bacteriophage P2, GpX Back     alignment and domain information
>PRK11649 putative peptidase; Provisional Back     alignment and domain information
>COG3061 OapA Cell envelope opacity-associated protein A [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF04225 OapA: Opacity-associated protein A LysM-like domain; InterPro: IPR007340 This entry includes the Haemophilus influenzae opacity-associated protein Back     alignment and domain information
>PRK11649 putative peptidase; Provisional Back     alignment and domain information
>COG3858 Predicted glycosyl hydrolase [General function prediction only] Back     alignment and domain information
>COG0739 NlpD Membrane proteins related to metalloendopeptidases [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>COG4784 Putative Zn-dependent protease [General function prediction only] Back     alignment and domain information
>PF13518 HTH_28: Helix-turn-helix domain Back     alignment and domain information
>COG4254 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>COG3170 FimV Tfp pilus assembly protein FimV [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>KOG2850 consensus Predicted peptidoglycan-binding protein, contains LysM domain [General function prediction only] Back     alignment and domain information
>PF02796 HTH_7: Helix-turn-helix domain of resolvase; InterPro: IPR006120 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms Back     alignment and domain information
>COG5004 P2-like prophage tail protein X [General function prediction only] Back     alignment and domain information
>COG3061 OapA Cell envelope opacity-associated protein A [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF01527 HTH_Tnp_1: Transposase; InterPro: IPR002514 Transposase proteins are necessary for efficient DNA transposition Back     alignment and domain information
>COG2963 Transposase and inactivated derivatives [DNA replication, recombination, and repair] Back     alignment and domain information
>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C Back     alignment and domain information
>COG5004 P2-like prophage tail protein X [General function prediction only] Back     alignment and domain information
>PF04218 CENP-B_N: CENP-B N-terminal DNA-binding domain; InterPro: IPR006695 Centromere Protein B (CENP-B) is a DNA-binding protein localized to the centromere Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query129
4eby_A212 Crystal Structure Of The Ectodomain Of A Receptor L 2e-05
>pdb|4EBY|A Chain A, Crystal Structure Of The Ectodomain Of A Receptor Like Kinase Length = 212 Back     alignment and structure 
Iteration: 1

 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 3   DTFYSVSTNKYQNLTTYQSVEVVNPAFVPTKLEVGDVFIFPVFCKCPDQTQLRNRVNYLV 62
           DT+  V+ + Y NLTT +S++  NP F  T + +       V C C D++  ++     V
Sbjct: 87  DTYERVAISNYANLTTMESLQARNP-FPATNIPLSATLNVLVNCSCGDESVSKD-FGLFV 144
Query: 63  SYVLQPSENLSSVASRFGIETQAI 86
           +Y L+P ++LSS+A   G+    +
Sbjct: 145 TYPLRPEDSLSSIARSSGVSADIL 168

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query129
4eby_A212 Chitin elicitor receptor kinase 1; pathogen-associ 5e-23
4eby_A212 Chitin elicitor receptor kinase 1; pathogen-associ 4e-04
2djp_A77 Hypothetical protein SB145; LYSM, structural genom 9e-06
1e0g_A48 Membrane-bound lytic murein transglycosylase D; ce 9e-05
2l9y_A167 CVNH-LYSM lectin; carbohydrate, sugar binding prot 3e-04
>4eby_A Chitin elicitor receptor kinase 1; pathogen-associated molecular patterns, pattern recognition receptors, LYSM, lysine chitin oligomer; HET: NAG BMA; 1.65A {Arabidopsis thaliana} PDB: 4ebz_A* Length = 212 Back     alignment and structure
 Score = 88.3 bits (218), Expect = 5e-23
 Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 5/122 (4%)

Query: 1   SGDTFYSVSTNKYQNLTTYQSVEVVNPAFVPTKLEVGDVFIFPVFCKCPDQTQLRNRVNY 60
             DT+  V+ + Y NLTT +S++  NP F  T + +       V C C D++        
Sbjct: 85  QEDTYERVAISNYANLTTMESLQARNP-FPATNIPLSATLNVLVNCSCGDESV-SKDFGL 142

Query: 61  LVSYVLQPSENLSSVASRFGIETQAIIDVNG--NNIRPFDTLFVPVARLPELKQPAVAPS 118
            V+Y L+P ++LSS+A   G+    +   N   N       ++VP  R P    P    S
Sbjct: 143 FVTYPLRPEDSLSSIARSSGVSADILQRYNPGVNFNSGNGIVYVPG-RDPNGAFPPFKSS 201

Query: 119 SA 120
             
Sbjct: 202 KQ 203
>4eby_A Chitin elicitor receptor kinase 1; pathogen-associated molecular patterns, pattern recognition receptors, LYSM, lysine chitin oligomer; HET: NAG BMA; 1.65A {Arabidopsis thaliana} PDB: 4ebz_A* Length = 212 Back     alignment and structure
>2djp_A Hypothetical protein SB145; LYSM, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 77 Back     alignment and structure
>1e0g_A Membrane-bound lytic murein transglycosylase D; cell WALL, hydrolase, glycosidase, lipoprotein, outer membrane, multigene family; NMR {Escherichia coli} SCOP: d.7.1.1 Length = 48 Back     alignment and structure
>2l9y_A CVNH-LYSM lectin; carbohydrate, sugar binding protein; NMR {Magnaporthe oryzae 70-15} Length = 167 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query129
4eby_A212 Chitin elicitor receptor kinase 1; pathogen-associ 99.93
4eby_A212 Chitin elicitor receptor kinase 1; pathogen-associ 99.92
2l9y_A167 CVNH-LYSM lectin; carbohydrate, sugar binding prot 99.63
2djp_A77 Hypothetical protein SB145; LYSM, structural genom 99.59
2gu1_A 361 Zinc peptidase; alpha/beta, beta barrel, structura 99.57
1e0g_A48 Membrane-bound lytic murein transglycosylase D; ce 99.52
2l9y_A167 CVNH-LYSM lectin; carbohydrate, sugar binding prot 99.39
1e0g_A48 Membrane-bound lytic murein transglycosylase D; ce 99.13
2djp_A77 Hypothetical protein SB145; LYSM, structural genom 99.11
4a1k_A165 Putative L, D-transpeptidase YKUD; transferase, pe 98.97
2gu1_A 361 Zinc peptidase; alpha/beta, beta barrel, structura 98.72
4a1k_A165 Putative L, D-transpeptidase YKUD; transferase, pe 98.27
3slu_A 371 M23 peptidase domain protein; outer membrane, hydr 97.74
3slu_A 371 M23 peptidase domain protein; outer membrane, hydr 97.67
2glo_A59 Brinker CG9653-PA; protein-DNA complex, helix-turn 85.3
2elh_A87 CG11849-PA, LD40883P; structural genomics, NPPSFA, 81.67
1tc3_C51 Protein (TC3 transposase); DNA binding, helix-turn 81.65
2jn6_A97 Protein CGL2762, transposase; GFT PSI-2, protein s 80.71
2jrt_A95 Uncharacterized protein; solution, structure, NESG 80.5
1jko_C52 HIN recombinase, DNA-invertase HIN; water-mediated 80.02
>4eby_A Chitin elicitor receptor kinase 1; pathogen-associated molecular patterns, pattern recognition receptors, LYSM, lysine chitin oligomer; HET: NAG BMA; 1.65A {Arabidopsis thaliana} PDB: 4ebz_A* Back     alignment and structure
Probab=99.93  E-value=2.1e-25  Score=163.34  Aligned_cols=105  Identities=28%  Similarity=0.412  Sum_probs=87.2

Q ss_pred             CCCcHHHHH-HhhCCCCCCHHHHHHhCCCCCCCCCCCCCEEEECCCCCCCCcccccccccceEEEEecCCCCHHHHHHHh
Q 037542            1 SGDTFYSVS-TNKYQNLTTYQSVEVVNPAFVPTKLEVGDVFIFPVFCKCPDQTQLRNRVNYLVSYVLQPSENLSSVASRF   79 (129)
Q Consensus         1 ~GDTl~~IA-~~~~~~lts~~~l~~~N~~~~~~~l~~Gq~L~IP~~~~~~~~~~~~~~~~~~~~y~V~~GDTl~~IA~~~   79 (129)
                      +|||||.|| ++|+ +++++++|+++|++ +++.|.+||+|.||..|.|+.... ........+|+|++|||||+||++|
T Consensus        85 ~GDTL~~IA~~~y~-~lvt~~~L~~~N~~-~~~~l~~Gq~L~IP~~~~~~~~~~-~~~~~~~~~Y~V~~GDTL~~IA~~f  161 (212)
T 4eby_A           85 QEDTYERVAISNYA-NLTTMESLQARNPF-PATNIPLSATLNVLVNCSCGDESV-SKDFGLFVTYPLRPEDSLSSIARSS  161 (212)
T ss_dssp             TTCCHHHHHHTTTT-TSSCHHHHHHHCCS-CTTCCCTTCEEEEEEECCCCCTTT-CSSCCCEEEEECCTTCCHHHHHHHH
T ss_pred             CCCcHHHHHHHhcC-CCCCHHHHHHhcCC-CcccCCCCCEEEEcCCCcCCCccc-ccCCCCeEEEEECCCCcHHHHHHHH
Confidence            599999999 7887 34499999999995 678999999999999998865432 2333445789999999999999999


Q ss_pred             CCCHHHHHhhcC--CCCCCCCEEEEcCCCCC
Q 037542           80 GIETQAIIDVNG--NNIRPFDTLFVPVARLP  108 (129)
Q Consensus        80 ~vs~~~l~~~N~--~~l~~Gq~L~IP~~~~p  108 (129)
                      |+++++|++||+  +.+..++.|+||.....
T Consensus       162 gvsv~~L~~~N~~~~~~~~~g~l~IP~~~~~  192 (212)
T 4eby_A          162 GVSADILQRYNPGVNFNSGNGIVYVPGRDPN  192 (212)
T ss_dssp             TSCHHHHHHHSTTCCTTSCSSEEEEECCCTT
T ss_pred             CcCHHHHHHhcCCCccCCCCCEEEecCCCCC
Confidence            999999999999  54455556999988743
>4eby_A Chitin elicitor receptor kinase 1; pathogen-associated molecular patterns, pattern recognition receptors, LYSM, lysine chitin oligomer; HET: NAG BMA; 1.65A {Arabidopsis thaliana} PDB: 4ebz_A* Back     alignment and structure
>2l9y_A CVNH-LYSM lectin; carbohydrate, sugar binding protein; NMR {Magnaporthe oryzae 70-15} Back     alignment and structure
>2djp_A Hypothetical protein SB145; LYSM, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae} Back     alignment and structure
>1e0g_A Membrane-bound lytic murein transglycosylase D; cell WALL, hydrolase, glycosidase, lipoprotein, outer membrane, multigene family; NMR {Escherichia coli} SCOP: d.7.1.1 Back     alignment and structure
>2l9y_A CVNH-LYSM lectin; carbohydrate, sugar binding protein; NMR {Magnaporthe oryzae 70-15} Back     alignment and structure
>1e0g_A Membrane-bound lytic murein transglycosylase D; cell WALL, hydrolase, glycosidase, lipoprotein, outer membrane, multigene family; NMR {Escherichia coli} SCOP: d.7.1.1 Back     alignment and structure
>2djp_A Hypothetical protein SB145; LYSM, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>4a1k_A Putative L, D-transpeptidase YKUD; transferase, peptidoglycan synthesis; HET: CME; 1.75A {Bacillus subtilis} PDB: 4a1j_A 4a1i_A* 1y7m_A 3zqd_A 4a52_A* Back     alignment and structure
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae} Back     alignment and structure
>4a1k_A Putative L, D-transpeptidase YKUD; transferase, peptidoglycan synthesis; HET: CME; 1.75A {Bacillus subtilis} PDB: 4a1j_A 4a1i_A* 1y7m_A 3zqd_A 4a52_A* Back     alignment and structure
>3slu_A M23 peptidase domain protein; outer membrane, hydrolase; 2.41A {Neisseria meningitidis} Back     alignment and structure
>3slu_A M23 peptidase domain protein; outer membrane, hydrolase; 2.41A {Neisseria meningitidis} Back     alignment and structure
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster} Back     alignment and structure
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster} Back     alignment and structure
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2 Back     alignment and structure
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19 Back     alignment and structure
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides} Back     alignment and structure
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 129
d1e0ga_48 d.7.1.1 (A:) Membrane-bound lytic murein transclyc 3e-06
d1y7ma248 d.7.1.1 (A:1-48) Hypothetical protein YkuD, N-term 2e-04
>d1e0ga_ d.7.1.1 (A:) Membrane-bound lytic murein transclycosylase D, MltD {Escherichia coli [TaxId: 562]} Length = 48 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: LysM domain
superfamily: LysM domain
family: LysM domain
domain: Membrane-bound lytic murein transclycosylase D, MltD
species: Escherichia coli [TaxId: 562]

 Score = 39.6 bits (93), Expect = 3e-06
 Identities = 13/45 (28%), Positives = 27/45 (60%), Gaps = 2/45 (4%)

Query: 62  VSYVLQPSENLSSVASRFGIETQAIIDVNG--NNIRPFDTLFVPV 104
           ++Y ++  ++LSS+A R G+  + ++  N    N++P D L + V
Sbjct: 3   ITYRVRKGDSLSSIAKRHGVNIKDVMRWNSDTANLQPGDKLTLFV 47
>d1y7ma2 d.7.1.1 (A:1-48) Hypothetical protein YkuD, N-terminal domain {Bacillus subtilis [TaxId: 1423]} Length = 48 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query129
d1e0ga_48 Membrane-bound lytic murein transclycosylase D, Ml 99.72
d1y7ma248 Hypothetical protein YkuD, N-terminal domain {Baci 99.66
d1y7ma248 Hypothetical protein YkuD, N-terminal domain {Baci 99.33
d1e0ga_48 Membrane-bound lytic murein transclycosylase D, Ml 99.31
d1ijwc_47 HIN recombinase (DNA-binding domain) {Synthetic} 93.34
d1k78a163 Pax-5 {Human (Homo sapiens) [TaxId: 9606]} 83.69
d2jn6a189 Uncharacterized protein Cgl2762 {Corynebacterium g 80.79
>d1e0ga_ d.7.1.1 (A:) Membrane-bound lytic murein transclycosylase D, MltD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: LysM domain
superfamily: LysM domain
family: LysM domain
domain: Membrane-bound lytic murein transclycosylase D, MltD
species: Escherichia coli [TaxId: 562]

Probab=99.72  E-value=3.7e-18  Score=95.93  Aligned_cols=44  Identities=30%  Similarity=0.543  Sum_probs=41.9

Q ss_pred             EEEEecCCCCHHHHHHHhCCCHHHHHhhcC--CCCCCCCEEEEcCC
Q 037542           62 VSYVLQPSENLSSVASRFGIETQAIIDVNG--NNIRPFDTLFVPVA  105 (129)
Q Consensus        62 ~~y~V~~GDTl~~IA~~~~vs~~~l~~~N~--~~l~~Gq~L~IP~~  105 (129)
                      .+|+|++|||||.||++||+++++|+++|+  +.|++||+|.||+.
T Consensus         3 v~y~V~~GDTl~~IA~~y~vs~~~i~~~N~l~~~l~~Gq~L~i~vk   48 (48)
T d1e0ga_           3 ITYRVRKGDSLSSIAKRHGVNIKDVMRWNSDTANLQPGDKLTLFVK   48 (48)
T ss_dssp             CEEEECTTCCHHHHHHHHTCCHHHHHHHCSCGGGCCTTEEEECCCC
T ss_pred             EEEEECCCCCHHHHHHHHCCCHHHHHHHcCCcccCcCCCEEEEEeC
Confidence            589999999999999999999999999999  77999999999974
>d1y7ma2 d.7.1.1 (A:1-48) Hypothetical protein YkuD, N-terminal domain {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1y7ma2 d.7.1.1 (A:1-48) Hypothetical protein YkuD, N-terminal domain {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1e0ga_ d.7.1.1 (A:) Membrane-bound lytic murein transclycosylase D, MltD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ijwc_ a.4.1.2 (C:) HIN recombinase (DNA-binding domain) {Synthetic} Back     information, alignment and structure
>d1k78a1 a.4.1.5 (A:19-81) Pax-5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2jn6a1 a.4.1.19 (A:1-89) Uncharacterized protein Cgl2762 {Corynebacterium glutamicum [TaxId: 1718]} Back     information, alignment and structure