Citrus Sinensis ID: 037561

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------18
MAFTSAHSLILILSAASMLTVSMANRGWSYGFNNTYYWPWGPNNGSPGSNNTNDDDDGPSKIVVGGSDNWHFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSVYQLPNLWSYLRCDLSRAKMIANTTQGGGDGFEFVLKRWLPYYFACGERGGFHCREGRMKFMVLPLLRRWHY
cccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccEEEEccccccccccccHHHHcccccEEEccEEEEEEcccccccccccEEEEccHHcccccccccccccccccccccccEEEEEcccccEEEEccccccccccccccEEEEEEccccccc
ccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccEEEEEccccccccccHHHHHHccccEEEccEEEEEEcccccccccccEEEEcccccccccccccHHHHEcccccccccEEEEEcccccEEEEEccccccccccccEEEEEEEccccccc
MAFTSAHSLILILSAASMLTVSMAnrgwsygfnntyywpwgpnngspgsnntnddddgpskivvggsdnwhfgfnysvwafqnapfyvndvlvfkydppndtvfphsvyqlpnlwsylRCDLSRAKMIAnttqgggdgfEFVLKRWLPyyfacgerggfhcregrmkfmvlpllrrwhy
MAFTSAHSLILILSAASMLTVSMANRGWSYGFNNTYYWPWGPNNGSPGSNNTNDDDDGPSKIVVGGSDNWHFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSVYQLPNLWSYLRCDLSRAKMIANTTQGGGDGFEFVLKRWLPYYFACGErggfhcregrmkfmvlpllrrwhy
MAFTsahslililsaasmlTVSMANRGWSYGFNNTYYWPWgpnngspgsnntnddddgpsKIVVGGSDNWHFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSVYQLPNLWSYLRCDLSRAKMIANTTQGGGDGFEFVLKRWLPYYFACGERGGFHCREGRMKFMVLPLLRRWHY
******HSLILILSAASMLTVSMANRGWSYGFNNTYYWPWG********************IVVGGSDNWHFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSVYQLPNLWSYLRCDLSRAKMIANTTQGGGDGFEFVLKRWLPYYFACGERGGFHCREGRMKFMVLPLLRRW**
****SAHSLILILSAASMLTVSMANRGWSYGFNNTYYWPWGPNNG***************KIVVGGSDNWHFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSVYQLPNLWSYLRCDLSRAKMIANTTQGGGDGFEFVLKRWLPYYFACGERGGFHCREGRMKFMVLPLL*****
MAFTSAHSLILILSAASMLTVSMANRGWSYGFNNTYYWPWGPNNGSPGSNNTNDDDDGPSKIVVGGSDNWHFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSVYQLPNLWSYLRCDLSRAKMIANTTQGGGDGFEFVLKRWLPYYFACGERGGFHCREGRMKFMVLPLLRRWHY
MAFTSAHSLILILSAASMLTVSMANRGWSYGFNNTYYWPWGPNNGSPGSNNTNDDDDGPSKIVVGGSDNWHFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSVYQLPNLWSYLRCDLSRAKMIANTTQGGGDGFEFVLKRWLPYYFACGERGGFHCREGRMKFMVLPLLRRWHY
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooo
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAFTSAHSLILILSAASMLTVSMANRGWSYGFNNTYYWPWGPNNGSPGSNNTNDDDDGPSKIVVGGSDNWHFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSVYQLPNLWSYLRCDLSRAKMIANTTQGGGDGFEFVLKRWLPYYFACGERGGFHCREGRMKFMVLPLLRRWHY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query179
356500066177 PREDICTED: uncharacterized protein LOC10 0.955 0.966 0.588 1e-54
225428719185 PREDICTED: uncharacterized protein LOC10 0.977 0.945 0.561 7e-54
297741327 1568 unnamed protein product [Vitis vinifera] 0.949 0.108 0.579 4e-52
356575188176 PREDICTED: uncharacterized protein LOC10 0.899 0.914 0.568 1e-51
351725547176 uncharacterized protein LOC100527575 pre 0.944 0.960 0.551 2e-51
356521201176 PREDICTED: uncharacterized protein LOC10 0.910 0.926 0.558 2e-51
147858315184 hypothetical protein VITISV_035937 [Viti 0.972 0.945 0.556 6e-51
297741325204 unnamed protein product [Vitis vinifera] 0.972 0.852 0.550 9e-51
356521203176 PREDICTED: uncharacterized protein LOC10 0.899 0.914 0.568 1e-50
224105511170 predicted protein [Populus trichocarpa] 0.916 0.964 0.611 4e-50
>gi|356500066|ref|XP_003518855.1| PREDICTED: uncharacterized protein LOC100803580 [Glycine max] Back     alignment and taxonomy information
 Score =  217 bits (553), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 103/175 (58%), Positives = 127/175 (72%), Gaps = 4/175 (2%)

Query: 1   MAFTSAHSLILILSAASMLTVSMANRGWSYGFNNTYYWPWGPNNGSPGSNNTNDDDDGPS 60
           MA   AH+L L +  ASML++SMAN+ WS+G N+ Y   W        + + N  +  P 
Sbjct: 1   MATKFAHALTLFVLVASMLSMSMANKDWSFGSNSNYSDWWSRFR----NRHQNKTEQEPR 56

Query: 61  KIVVGGSDNWHFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSVYQLPNLWSYLRC 120
           KI+VGGS+ WHFGFNY+ WAF+N PFY+ND LVFKYD PN T FPHSVY  PNLWS+L C
Sbjct: 57  KIIVGGSEGWHFGFNYTDWAFKNGPFYLNDTLVFKYDAPNATSFPHSVYIFPNLWSFLNC 116

Query: 121 DLSRAKMIANTTQGGGDGFEFVLKRWLPYYFACGERGGFHCREGRMKFMVLPLLR 175
           D+  AKM+AN TQGGG+GF FVL RW PY+FACGER GFHC  G+MKF V+P++R
Sbjct: 117 DVKSAKMLANPTQGGGEGFHFVLNRWQPYFFACGERNGFHCNSGQMKFAVMPIIR 171

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225428719|ref|XP_002281903.1| PREDICTED: uncharacterized protein LOC100245201 [Vitis vinifera] gi|297741324|emb|CBI32455.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297741327|emb|CBI32458.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356575188|ref|XP_003555724.1| PREDICTED: uncharacterized protein LOC100813442 [Glycine max] Back     alignment and taxonomy information
>gi|351725547|ref|NP_001238120.1| uncharacterized protein LOC100527575 precursor [Glycine max] gi|255632665|gb|ACU16684.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356521201|ref|XP_003529245.1| PREDICTED: uncharacterized protein LOC100784808 [Glycine max] Back     alignment and taxonomy information
>gi|147858315|emb|CAN81417.1| hypothetical protein VITISV_035937 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297741325|emb|CBI32456.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356521203|ref|XP_003529246.1| PREDICTED: uncharacterized protein LOC100785335 [Glycine max] Back     alignment and taxonomy information
>gi|224105511|ref|XP_002313837.1| predicted protein [Populus trichocarpa] gi|222850245|gb|EEE87792.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query179
TAIR|locus:2044611257 AT2G15780 [Arabidopsis thalian 0.642 0.447 0.581 5.7e-38
TAIR|locus:2044621301 AT2G15770 [Arabidopsis thalian 0.832 0.495 0.387 1.5e-28
TAIR|locus:2118909343 AT4G33930 [Arabidopsis thalian 0.575 0.300 0.368 8.4e-14
TAIR|locus:2116199313 AT4G34300 [Arabidopsis thalian 0.558 0.319 0.368 1e-12
TAIR|locus:2086518174 AT3G27200 [Arabidopsis thalian 0.519 0.534 0.342 3.3e-08
TAIR|locus:1006230143163 ENODL20 "early nodulin-like pr 0.536 0.588 0.369 5.3e-08
TAIR|locus:2116767177 ENODL15 "early nodulin-like pr 0.541 0.548 0.316 3.4e-06
TAIR|locus:2127861221 ENODL4 "early nodulin-like pro 0.508 0.411 0.327 1.3e-05
TAIR|locus:4010713753106 AT3G17675 [Arabidopsis thalian 0.536 0.905 0.315 1.5e-05
TAIR|locus:2174428182 ENODL10 "early nodulin-like pr 0.536 0.527 0.338 2.6e-05
TAIR|locus:2044611 AT2G15780 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 386 (140.9 bits), Expect = 5.7e-38, Sum P(2) = 5.7e-38
 Identities = 68/117 (58%), Positives = 84/117 (71%)

Query:    61 KIVVGGSDNWHFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSVYQLPNLWSYLRC 120
             KI+VGG   W +GFNY+ WA + APF++ND+LVFKY+PP    F HSVY LPN  SY +C
Sbjct:   143 KIIVGGDKEWTYGFNYADWASKTAPFFLNDILVFKYNPP--APFTHSVYLLPNPSSYEKC 200

Query:   121 DLSRAKMIANTTQGGGDGFEFVLKRWLPYYFACGERGGFHCREGRMKFMVLPLLRRW 177
             D+ + KMIA+  QG G GFEFVLK+  PYY +CGE  G HC  G MKF V+P+L RW
Sbjct:   201 DVKKGKMIASPKQGAGKGFEFVLKQMKPYYISCGEHDGAHCSNGTMKFTVMPMLPRW 257
GO:0005507 "copper ion binding" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0009055 "electron carrier activity" evidence=IEA
TAIR|locus:2044621 AT2G15770 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2118909 AT4G33930 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2116199 AT4G34300 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086518 AT3G27200 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:1006230143 ENODL20 "early nodulin-like protein 20" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2116767 ENODL15 "early nodulin-like protein 15" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2127861 ENODL4 "early nodulin-like protein 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:4010713753 AT3G17675 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2174428 ENODL10 "early nodulin-like protein 10" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query179
pfam0229884 pfam02298, Cu_bind_like, Plastocyanin-like domain 2e-06
PLN03148167 PLN03148, PLN03148, Blue copper-like protein; Prov 4e-04
>gnl|CDD|216965 pfam02298, Cu_bind_like, Plastocyanin-like domain Back     alignment and domain information 
 Score = 43.5 bits (103), Expect = 2e-06
 Identities = 30/97 (30%), Positives = 38/97 (39%), Gaps = 16/97 (16%)

Query: 70  WHFGFN--YSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSVYQLPNLWSYLRCDLSRAKM 127
           W    N  Y++WA     F V D LVF YD     V    V +      Y  C+ S+   
Sbjct: 1   WTVPLNADYTLWA-SGKTFRVGDTLVFNYDKGFHNV--VEVTKA----DYESCNTSKP-- 51

Query: 128 IANTTQGGGDGFEFVLKRWLPYYFACGERGGFHCREG 164
              T   G D     L +   +YF CG  G  HC+ G
Sbjct: 52  -IRTYTTGND--IIPLTKPGQHYFICGVPG--HCKGG 83

This family represents a domain found in flowering plants related to the copper binding protein plastocyanin. Some members of this family may not bind copper due to the lack of key residues. Length = 84
>gnl|CDD|178693 PLN03148, PLN03148, Blue copper-like protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 179
PLN03148167 Blue copper-like protein; Provisional 100.0
PF0229885 Cu_bind_like: Plastocyanin-like domain; InterPro: 99.96
PRK02710119 plastocyanin; Provisional 97.95
PF0012799 Copper-bind: Copper binding proteins, plastocyanin 97.93
TIGR0265699 cyanin_plasto plastocyanin. Members of this family 97.87
COG3794128 PetE Plastocyanin [Energy production and conversio 97.64
TIGR03102115 halo_cynanin halocyanin domain. Halocyanins are bl 97.61
TIGR02375116 pseudoazurin pseudoazurin. Pseudoazurin, also call 97.54
TIGR0265783 amicyanin amicyanin. Members of this family are am 96.58
PF06525196 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Memb 95.75
TIGR03095148 rusti_cyanin rusticyanin. Rusticyanin is a blue co 95.42
TIGR03094195 sulfo_cyanin sulfocyanin. Members of this family a 93.92
COG4454158 Uncharacterized copper-binding protein [Inorganic 91.52
KOG3858233 consensus Ephrin, ligand for Eph receptor tyrosine 91.16
PF00812145 Ephrin: Ephrin; InterPro: IPR001799 Ephrins are a 89.95
PF13473104 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 89.46
TIGR03096135 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as de 83.26
>PLN03148 Blue copper-like protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=8e-38  Score=254.22  Aligned_cols=103  Identities=33%  Similarity=0.640  Sum_probs=96.2

Q ss_pred             CCcEEEEcCCCCCCCCCCCchhhcCCCCEEeCCEEEEEeCCCCCCCCCcceEEeCCcccCCcCCCCCccceeeecCCCCc
Q 037561           58 GPSKIVVGGSDNWHFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSVYQLPNLWSYLRCDLSRAKMIANTTQGGGD  137 (179)
Q Consensus        58 ~A~~~~VGg~~GW~~~~~Yt~WA~~~ktF~VGDtLvF~Y~~~~~~~~~HsV~~V~~~~~Yd~C~~s~~~~i~~~~~G~~~  137 (179)
                      .|++|+|||+.||+.+.||++||+ +++|+|||+|+|+|+++     +|+|+|| ++++|++|+.+++  +..+++|++ 
T Consensus        19 ~a~~~~VGd~~GW~~~~~Y~~WA~-~k~F~VGD~LvF~Y~~~-----~hnV~~V-~~~~Y~~C~~~~p--i~~~tsG~d-   88 (167)
T PLN03148         19 TATDHIVGANKGWNPGINYTLWAN-NQTFYVGDLISFRYQKT-----QYNVFEV-NQTGYDNCTTEGA--AGNWTSGKD-   88 (167)
T ss_pred             cceEEEeCCCCCcCCCCChhHhhc-CCCCccCCEEEEEecCC-----CceEEEE-ChHHcCcccCCCC--cceecCCCc-
Confidence            679999999999999999999999 58999999999999998     7999999 9999999999988  889999987 


Q ss_pred             ceEEEecCcccEEEEeCCCCCCCCcCCceEEEEEecCCC
Q 037561          138 GFEFVLKRWLPYYFACGERGGFHCREGRMKFMVLPLLRR  176 (179)
Q Consensus       138 ~f~v~L~~~G~~YFiCg~~~g~HC~~GqMKlaV~v~~~p  176 (179)
                        .|+|+++|++||||| .  +||++| |||+|+|.+.|
T Consensus        89 --~v~L~~~G~~YFIcg-~--ghC~~G-mKl~I~V~~~~  121 (167)
T PLN03148         89 --FIPLNKAKRYYFICG-N--GQCFNG-MKVTILVHPLP  121 (167)
T ss_pred             --EEEecCCccEEEEcC-C--CccccC-CEEEEEEcCCC
Confidence              899999999999999 5  799999 89999997643

>PF02298 Cu_bind_like: Plastocyanin-like domain; InterPro: IPR003245 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ] Back     alignment and domain information
>PRK02710 plastocyanin; Provisional Back     alignment and domain information
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ] Back     alignment and domain information
>TIGR02656 cyanin_plasto plastocyanin Back     alignment and domain information
>COG3794 PetE Plastocyanin [Energy production and conversion] Back     alignment and domain information
>TIGR03102 halo_cynanin halocyanin domain Back     alignment and domain information
>TIGR02375 pseudoazurin pseudoazurin Back     alignment and domain information
>TIGR02657 amicyanin amicyanin Back     alignment and domain information
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus Back     alignment and domain information
>TIGR03095 rusti_cyanin rusticyanin Back     alignment and domain information
>TIGR03094 sulfo_cyanin sulfocyanin Back     alignment and domain information
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG3858 consensus Ephrin, ligand for Eph receptor tyrosine kinase [Signal transduction mechanisms] Back     alignment and domain information
>PF00812 Ephrin: Ephrin; InterPro: IPR001799 Ephrins are a family of proteins [] that are ligands of class V (EPH-related) receptor protein-tyrosine kinases (see IPR001426 from INTERPRO) Back     alignment and domain information
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D Back     alignment and domain information
>TIGR03096 nitroso_cyanin nitrosocyanin Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query179
1jer_A138 Cucumber stellacyanin; electron transport, copper, 2e-16
1x9u_A116 Umecyanin; cupredoxin, phytocyanin, copper binding 3e-14
1ws8_A109 Mavicyanin; oxidized form, phytocyanin, cupredoxin 1e-13
2cbp_A96 Cucumber basic protein; electron transport, phytoc 3e-13
1f56_A91 Plantacyanin; cupredoxin, copper protein, beta bar 7e-12
>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1 Length = 138 Back     alignment and structure
 Score = 70.8 bits (173), Expect = 2e-16
 Identities = 24/111 (21%), Positives = 39/111 (35%), Gaps = 16/111 (14%)

Query: 63  VVGGSDNWHFGFN---YSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSVYQLPNLWSYLR 119
           +VG +  W    +   YS WA     F V D L F +         H+V+++    S+  
Sbjct: 7   IVGDNTGWSVPSSPNFYSQWA-AGKTFRVGDSLQFNFPANA-----HNVHEMETKQSFDA 60

Query: 120 CDLSRAKMIANTTQGGGDGFEFVLKRWLPYYFACGERGGFHCREGRMKFMV 170
           C+   +    +  +         L     +YF C      HC  G  K  +
Sbjct: 61  CNFVNS--DNDVERTSPV--IERLDELGMHYFVCTVGT--HCSNG-QKLSI 104
>1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta barrel, electron transport; 1.80A {Armoracia rusticana} PDB: 1x9r_A Length = 116 Back     alignment and structure
>1ws8_A Mavicyanin; oxidized form, phytocyanin, cupredoxin, electron transport; 1.60A {Cucurbita pepo} SCOP: b.6.1.1 PDB: 1ws7_A Length = 109 Back     alignment and structure
>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1 Length = 96 Back     alignment and structure
>1f56_A Plantacyanin; cupredoxin, copper protein, beta barrel, plant protein; 2.05A {Spinacia oleracea} SCOP: b.6.1.1 Length = 91 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query179
1ws8_A109 Mavicyanin; oxidized form, phytocyanin, cupredoxin 100.0
1jer_A138 Cucumber stellacyanin; electron transport, copper, 100.0
2cbp_A96 Cucumber basic protein; electron transport, phytoc 100.0
1x9u_A116 Umecyanin; cupredoxin, phytocyanin, copper binding 100.0
1f56_A91 Plantacyanin; cupredoxin, copper protein, beta bar 99.97
1qhq_A140 Protein (auracyanin); electron transfer, cupredoxi 99.07
2cal_A154 Rusticyanin; iron respiratory electron transport c 99.03
1bxv_A91 Plastocyanin; copper protein, electron transfer; 1 98.9
1pmy_A123 Pseudoazurin; electron transfer(cuproprotein); 1.5 98.76
1paz_A123 Pseudoazurin precursor; electron transfer(cupropro 98.74
2aan_A139 Auracyanin A; cupredoxin fold, electron transport; 98.6
3erx_A123 Pseudoazurin; copper protein, high-resolution, E t 98.51
3ef4_A124 Pseudoazurin, blue copper protein; electron transf 98.51
3tu6_A127 Pseudoazurin (blue copper protein); cupredoxins, b 98.51
1iuz_A98 Plastocyanin; electron transport; 1.60A {Ulva pert 98.49
1kdj_A102 Plastocyanin; electron transfer, photosystem, PAI- 98.48
1plc_A99 Plastocyanin; electron transport; 1.33A {Populus n 98.47
2gim_A106 Plastocyanin; beta sheet, Cu, helix, electron tran 98.43
2plt_A98 Plastocyanin; electron transport; 1.50A {Chlamydom 98.4
1byp_A99 Protein (plastocyanin); electron transfer, photosy 98.4
1b3i_A97 PETE protein, protein (plastocyanin); electron tra 98.31
1pcs_A98 Plastocyanin; electron transport; 2.15A {Synechocy 98.16
3cvb_A105 Plastocyanin; cupredoxin, SELF assembly, copper, e 97.65
2ux6_A122 Pseudoazurin; type-1 copper, metal-binding, redox 97.61
4hci_A100 Cupredoxin 1; structural genomics, niaid, national 97.54
2ov0_A105 Amicyanin; beta-sandwich, electron transport; 0.75 97.28
1cuo_A129 Protein (azurin ISO-2); beta barrel, periplasmic, 97.22
1id2_A106 Amicyanin; beta barrel, type-1 blue copper protein 97.17
3ay2_A167 Lipid modified azurin protein; beta sandwich, bact 97.07
3c75_A132 Amicyanin; copper proteins, electron transfer comp 97.01
1iko_P178 Ephrin-B2; greek KEY, glycosylation, signaling pro 96.9
1nwp_A128 Azurin; electron transport, cupredoxin, electron t 96.82
2ccw_A129 Azurin II, AZN-2; electron transport (cuproprotein 96.71
2iaa_C128 Azurin; quinoprotein, tryptophan tryptophylquinone 96.64
1shx_A138 Ephrin-A5; ephrin signaling, hormone-growth factor 95.92
2x11_B177 Ephrin-A5; receptor-signaling protein complex, dev 95.69
2cua_A135 Protein (CUA); CUA center, electron transport; 1.6 95.47
3s8f_B168 Cytochrome C oxidase subunit 2; complex IV, respir 95.45
1iby_A112 Nitrosocyanin; RED copper, cupredoxin, beta hairpi 95.16
2wo3_B157 Ephrin-A2; transferase-signaling protein complex, 95.16
3czu_B182 Ephrin-A1; ATP-binding, kinase, nucleotide-binding 94.01
3d12_B141 Ephrin-B3; beta propeller, protein-receptor comple 93.77
3hei_B132 Ephrin-A1; EPH receptor tyrosine kinase, cell memb 93.64
2vsm_B140 Ephrin-B2; developmental protein, henipavirus, neu 93.01
1fwx_A595 Nitrous oxide reductase; beta-propeller domain, cu 89.66
2dv6_A 447 Nitrite reductase; electron transfer, reduction, d 89.37
3sbq_A638 Nitrous-oxide reductase; beta-propeller, cupredoxi 83.49
>1ws8_A Mavicyanin; oxidized form, phytocyanin, cupredoxin, electron transport; 1.60A {Cucurbita pepo} SCOP: b.6.1.1 PDB: 1ws7_A Back     alignment and structure
Probab=100.00  E-value=2.9e-38  Score=239.41  Aligned_cols=104  Identities=31%  Similarity=0.495  Sum_probs=96.2

Q ss_pred             CCcEEEEcCCCCCCCC--CCCchhhcCCCCEEeCCEEEEEeCCCCCCCCCcceEEeCCcccCCcCCCCCccceeeecCCC
Q 037561           58 GPSKIVVGGSDNWHFG--FNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSVYQLPNLWSYLRCDLSRAKMIANTTQGG  135 (179)
Q Consensus        58 ~A~~~~VGg~~GW~~~--~~Yt~WA~~~ktF~VGDtLvF~Y~~~~~~~~~HsV~~V~~~~~Yd~C~~s~~~~i~~~~~G~  135 (179)
                      +|++|+|||+.||+++  .+|++||++ ++|+|||+|+|+|+++     .|+|+|| ++++|+.|+.++|  +..+++|.
T Consensus         1 ~a~~~~VG~~~GW~~~~~~~Y~~Wa~~-~~F~vGD~LvF~y~~~-----~hsV~~V-~~~~y~~C~~~~p--~~~~~~G~   71 (109)
T 1ws8_A            1 MATVHKVGDSTGWTTLVPYDYAKWASS-NKFHVGDSLLFNYNNK-----FHNVLQV-DQEQFKSCNSSSP--AASYTSGA   71 (109)
T ss_dssp             CCCEEETTGGGCSCSSSCCCHHHHHHT-SCBCTTCEEEEECCTT-----TCCEEEE-CHHHHHHTCCSSC--SEEECSSE
T ss_pred             CCcEEEeCCCCCccCCCCcChhHhhcC-CcCcCCCEEEEeecCC-----CceEEEE-ChHHCCcccCCCc--ccccCCCC
Confidence            4789999999999998  899999995 8999999999999998     7999999 9999999999988  88899987


Q ss_pred             CcceEEEecCcccEEEEeCCCCCCCCcCCceEEEEEecCCC
Q 037561          136 GDGFEFVLKRWLPYYFACGERGGFHCREGRMKFMVLPLLRR  176 (179)
Q Consensus       136 ~~~f~v~L~~~G~~YFiCg~~~g~HC~~GqMKlaV~v~~~p  176 (179)
                      +   +|+|+++|++||||+++  +||++| |||+|+|++.+
T Consensus        72 ~---~v~L~~~G~~yFic~~~--gHC~~G-mKl~I~V~~~~  106 (109)
T 1ws8_A           72 D---SIPLKRPGTFYFLCGIP--GHCQLG-QKVEIKVDPGS  106 (109)
T ss_dssp             E---EEECCSSEEEEEECCST--TTTTTT-CEEEEEECC--
T ss_pred             E---EEEECCCcCEEEECCCC--CcccCC-CEEEEEEcCCC
Confidence            6   89999999999999999  999999 99999998765
>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1 Back     alignment and structure
>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1 Back     alignment and structure
>1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta barrel, electron transport; 1.80A {Armoracia rusticana} PDB: 1x9r_A Back     alignment and structure
>1f56_A Plantacyanin; cupredoxin, copper protein, beta barrel, plant protein; 2.05A {Spinacia oleracea} SCOP: b.6.1.1 Back     alignment and structure
>1qhq_A Protein (auracyanin); electron transfer, cupredoxin, blue copper protein, azurin-L thermophIle; 1.55A {Chloroflexus aurantiacus} SCOP: b.6.1.1 PDB: 1ov8_A Back     alignment and structure
>2cal_A Rusticyanin; iron respiratory electron transport chain, blue protein, electron transport, metal- binding, periplasmic; 1.10A {Thiobacillus ferrooxidans} PDB: 1cur_A 1gy2_A 1a3z_A 1e30_A 1gy1_A 1rcy_A 1a8z_A 2cak_A Back     alignment and structure
>1bxv_A Plastocyanin; copper protein, electron transfer; 1.80A {Synechococcus elongatus} SCOP: b.6.1.1 PDB: 1bxu_A Back     alignment and structure
>1pmy_A Pseudoazurin; electron transfer(cuproprotein); 1.50A {Methylobacterium extorquens} SCOP: b.6.1.1 Back     alignment and structure
>1paz_A Pseudoazurin precursor; electron transfer(cuproprotein); 1.55A {Alcaligenes faecalis} SCOP: b.6.1.1 PDB: 1pza_A 1pzb_A 1pzc_A 2p80_D 3nyk_A 3paz_A 8paz_A 4paz_A 5paz_A 6paz_A 7paz_A 1py0_A* Back     alignment and structure
>2aan_A Auracyanin A; cupredoxin fold, electron transport; 1.85A {Chloroflexus aurantiacus} Back     alignment and structure
>3erx_A Pseudoazurin; copper protein, high-resolution, E transport, metal-binding, transport; 1.25A {Paracoccus pantotrophus} SCOP: b.6.1.1 PDB: 1adw_A Back     alignment and structure
>3ef4_A Pseudoazurin, blue copper protein; electron transfer, electron transport; HET: PO4; 1.18A {Hyphomicrobium denitrificans} SCOP: b.6.1.0 Back     alignment and structure
>3tu6_A Pseudoazurin (blue copper protein); cupredoxins, beta barrel, electron transfer, redox, electron transport; 2.00A {Sinorhizobium meliloti} Back     alignment and structure
>1iuz_A Plastocyanin; electron transport; 1.60A {Ulva pertusa} SCOP: b.6.1.1 PDB: 7pcy_A Back     alignment and structure
>1kdj_A Plastocyanin; electron transfer, photosystem, PAI-PAI stacking; 1.70A {Adiantum capillus-veneris} SCOP: b.6.1.1 PDB: 1kdi_A 2bz7_A 2bzc_A Back     alignment and structure
>1plc_A Plastocyanin; electron transport; 1.33A {Populus nigra} SCOP: b.6.1.1 PDB: 1pnc_A 1pnd_A 1tkw_A* 2pcy_A 3pcy_A 4pcy_A 5pcy_A 6pcy_A 1jxg_A 1ag6_A 1ylb_B 2pcf_A* 1oow_A 1tef_A 9pcy_A 1teg_A 1byo_A Back     alignment and structure
>2gim_A Plastocyanin; beta sheet, Cu, helix, electron transport; 1.60A {Anabaena variabilis} SCOP: b.6.1.1 PDB: 1fa4_A 1nin_A 1tu2_A* 2cj3_A Back     alignment and structure
>2plt_A Plastocyanin; electron transport; 1.50A {Chlamydomonas reinhardtii} SCOP: b.6.1.1 Back     alignment and structure
>1byp_A Protein (plastocyanin); electron transfer, photosynthesis, acidic patch, double mutant, electron transport; 1.75A {Silene latifolia subsp} SCOP: b.6.1.1 PDB: 1pla_A 1plb_A Back     alignment and structure
>1b3i_A PETE protein, protein (plastocyanin); electron transport, type I copper protein, photosynthesis; NMR {Prochlorothrix hollandica} SCOP: b.6.1.1 PDB: 2b3i_A 2jxm_A* Back     alignment and structure
>1pcs_A Plastocyanin; electron transport; 2.15A {Synechocystis SP} SCOP: b.6.1.1 PDB: 1m9w_A 1j5c_A 1j5d_A 1jxd_A 1jxf_A Back     alignment and structure
>3cvb_A Plastocyanin; cupredoxin, SELF assembly, copper, electron transport, metal-binding, transport; 1.40A {Phormidium laminosum} PDB: 3cvc_A 3cvd_A 2w8c_A 2w88_A 2q5b_A 1baw_A 3bqv_A Back     alignment and structure
>2ux6_A Pseudoazurin; type-1 copper, metal-binding, redox potential, copper, transport, cupredoxin, periplasmic, electron transport; 1.3A {Achromobacter cycloclastes} PDB: 2ux7_A 2uxf_A 2uxg_A 1bqk_A 1bqr_A 1zia_A 1zib_A 2jkw_A Back     alignment and structure
>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A Back     alignment and structure
>2ov0_A Amicyanin; beta-sandwich, electron transport; 0.75A {Paracoccus denitrificans} SCOP: b.6.1.1 PDB: 1aaj_A 1aan_A 1aac_A 1mg2_C* 1mg3_C* 1t5k_A 2gc4_C* 2gc7_C* 2j55_A* 2j56_A* 2j57_A* 2mta_A* 1bxa_A 2rac_A 3l45_A 3ie9_A 3iea_A 2idq_A 2ids_A 1sf3_A ... Back     alignment and structure
>1cuo_A Protein (azurin ISO-2); beta barrel, periplasmic, electron transport; 1.60A {Methylomonas SP} SCOP: b.6.1.1 PDB: 1uat_A Back     alignment and structure
>1id2_A Amicyanin; beta barrel, type-1 blue copper protein, electron transfer protein, electron transport; 2.15A {Paracoccus versutus} SCOP: b.6.1.1 Back     alignment and structure
>3ay2_A Lipid modified azurin protein; beta sandwich, bacterial protein, anticancer, anti-HIV/AIDS, antiparasitic activity, antitumor protein; 1.90A {Neisseria gonorrhoeae} Back     alignment and structure
>3c75_A Amicyanin; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} Back     alignment and structure
>1iko_P Ephrin-B2; greek KEY, glycosylation, signaling protein; HET: NAG MAN; 1.92A {Mus musculus} SCOP: b.6.1.5 Back     alignment and structure
>1nwp_A Azurin; electron transport, cupredoxin, electron transfer; 1.60A {Pseudomonas putida} SCOP: b.6.1.1 PDB: 1nwo_A 1joi_A Back     alignment and structure
>2ccw_A Azurin II, AZN-2; electron transport (cuproprotein), alcaligenes xylosoxidans, electron transfer, cupredoxin, electron transport; 1.13A {Alcaligenes xylosoxydans} SCOP: b.6.1.1 PDB: 1dz0_A 1dyz_A 1aiz_A 1azb_A 1azc_A 1uri_A 2aza_A 1a4a_A 1a4b_A 1a4c_A Back     alignment and structure
>2iaa_C Azurin; quinoprotein, tryptophan tryptophylquinone, cupredoxin, electron transfer, oxidoreductase/electron transport comple; HET: TRQ; 1.95A {Alcaligenes faecalis} PDB: 2h47_C* 2h3x_C* Back     alignment and structure
>1shx_A Ephrin-A5; ephrin signaling, hormone-growth factor complex; HET: NAG; 2.10A {Mus musculus} SCOP: b.6.1.5 PDB: 1shw_A* 3mx0_B* Back     alignment and structure
>2x11_B Ephrin-A5; receptor-signaling protein complex, developmental protein, signaling platform, kinase, transferase, neurogenesis, receptor, cataract; 4.83A {Homo sapiens} Back     alignment and structure
>2cua_A Protein (CUA); CUA center, electron transport; 1.60A {Thermus thermophilus} SCOP: b.6.1.2 PDB: 2fwl_B* Back     alignment and structure
>3s8f_B Cytochrome C oxidase subunit 2; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 1ehk_B* 2qpd_B* 3qjq_B* 3qjr_B* 3qju_B* 3qjv_B* 1xme_B* 3s8g_B* 4esl_B* 4ev3_B* 4f05_B* 4fa7_B* 4faa_B* 3qjs_B* 3bvd_B* 2qpe_B* 3qjt_B* 3s3b_B* 3s33_B* 3s39_B* ... Back     alignment and structure
>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4 PDB: 1ibz_A 1ic0_A Back     alignment and structure
>2wo3_B Ephrin-A2; transferase-signaling protein complex, EFN, EPHA4, KINA ephrin, complex, membrane, cell surface receptor, tyrosine- kinase, glycoprotein; HET: NAG; 2.35A {Homo sapiens} Back     alignment and structure
>3czu_B Ephrin-A1; ATP-binding, kinase, nucleotide-binding, receptor, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG MAN; 2.65A {Homo sapiens} PDB: 3mbw_B* Back     alignment and structure
>3d12_B Ephrin-B3; beta propeller, protein-receptor complex, envelope protein, glycoprotein, hemagglutinin, hydrolase, membrane, signal-AN transmembrane; HET: NAG BMA MAN BGC LXZ NGA GL0 GLC LXB NGZ GXL; 3.00A {Mus musculus} Back     alignment and structure
>3hei_B Ephrin-A1; EPH receptor tyrosine kinase, cell membrane, disulfi glycoprotein, GPI-anchor, lipoprotein, membrane, ATP-bindin kinase; 2.00A {Homo sapiens} SCOP: b.6.1.0 Back     alignment and structure
>2vsm_B Ephrin-B2; developmental protein, henipavirus, neurogenesis, glycoprotein, paramyxovirus, envelope protein, cell surface receptor, hendra, virion; HET: NAG; 1.80A {Homo sapiens} PDB: 2wo2_B* 2i85_A 3gxu_B 2vsk_B 2hle_B 1kgy_E Back     alignment and structure
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A Back     alignment and structure
>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans} Back     alignment and structure
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 179
d1jera_110 b.6.1.1 (A:) Stellacyanin {Cucumber (Cucumis sativ 4e-15
d2cbpa_96 b.6.1.1 (A:) Plantacyanin {Cucumber (Cucumis sativ 1e-14
d1ws8a_104 b.6.1.1 (A:) Mavicyanin {Zucchini (Cucurbita pepo) 1e-13
d1f56a_91 b.6.1.1 (A:) Plantacyanin {Spinach (Spinacia olera 5e-11
>d1jera_ b.6.1.1 (A:) Stellacyanin {Cucumber (Cucumis sativus) [TaxId: 3659]} Length = 110 Back     information, alignment and structure

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Stellacyanin
species: Cucumber (Cucumis sativus) [TaxId: 3659]

 Score = 65.8 bits (160), Expect = 4e-15
 Identities = 24/111 (21%), Positives = 38/111 (34%), Gaps = 16/111 (14%)

Query: 63  VVGGSDNWHFGFN---YSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSVYQLPNLWSYLR 119
           +VG +  W    +   YS WA     F V D L F +         H+V+++    S+  
Sbjct: 7   IVGDNTGWSVPSSPNFYSQWA-AGKTFRVGDSLQFNFPANA-----HNVHEMETKQSFDA 60

Query: 120 CDLSRAKMIANTTQGGGDGFEFVLKRWLPYYFACGERGGFHCREGRMKFMV 170
           C+       ++            L     +YF C      HC  G  K  +
Sbjct: 61  CNFVN----SDNDVERTSPVIERLDELGMHYFVCTVGT--HCSNG-QKLSI 104
>d2cbpa_ b.6.1.1 (A:) Plantacyanin {Cucumber (Cucumis sativus) [TaxId: 3659]} Length = 96 Back     information, alignment and structure
>d1ws8a_ b.6.1.1 (A:) Mavicyanin {Zucchini (Cucurbita pepo) [TaxId: 3663]} Length = 104 Back     information, alignment and structure
>d1f56a_ b.6.1.1 (A:) Plantacyanin {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 91 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query179
d2cbpa_96 Plantacyanin {Cucumber (Cucumis sativus) [TaxId: 3 100.0
d1ws8a_104 Mavicyanin {Zucchini (Cucurbita pepo) [TaxId: 3663 100.0
d1jera_110 Stellacyanin {Cucumber (Cucumis sativus) [TaxId: 3 100.0
d1f56a_91 Plantacyanin {Spinach (Spinacia oleracea) [TaxId: 99.96
d1bypa_99 Plastocyanin {White campion (Silene pratensis) [Ta 98.89
d1iuza_98 Plastocyanin {Ulva pertusa, a sea lettuce [TaxId: 98.8
d2plta_98 Plastocyanin {Green alga (Chlamydomonas reinhardti 98.64
d1plca_99 Plastocyanin {Poplar (Populus nigra), variant ital 98.61
d2q5ba1105 Plastocyanin {Cyanobacterium (Phormidium laminosum 98.44
d2cj3a1105 Plastocyanin {Anabaena variabilis [TaxId: 1172]} 98.42
d1adwa_123 Pseudoazurin {Thiosphaera pantotropha [TaxId: 8236 98.41
d1kdja_102 Plastocyanin {Fern (Adiantum capillus-veneris) [Ta 98.37
d1paza_120 Pseudoazurin {Alcaligenes faecalis, strain s-6 [Ta 98.35
d2jxma197 Plastocyanin {Photosynthetic prokaryote (Prochloro 98.26
d1bqka_124 Pseudoazurin {Achromobacter cycloclastes [TaxId: 2 98.24
d1qhqa_139 Auracyanin {Chloroflexus aurantiacus [TaxId: 1108] 98.24
d1pmya_123 Pseudoazurin {Methylobacterium extorquens, strain 98.23
d1pcsa_98 Plastocyanin {Cyanobacterium (Synechocystis sp.), 98.21
d1bxua_91 Plastocyanin {Cyanobacterium (Synechocystis sp.), 97.98
d2ov0a1105 Amicyanin {Paracoccus denitrificans [TaxId: 266]} 97.8
d1id2a_106 Amicyanin {Paracoccus versutus (Thiobacillus versu 97.39
d1e30a_153 Rusticyanin {Thiobacillus ferrooxidans [TaxId: 920 96.71
d1cuoa_129 Azurin {Methylomonas sp. j [TaxId: 32038]} 96.67
d2ccwa1129 Azurin {Alcaligenes xylosoxidans, NCIMB (11015), d 96.54
d1ibya_112 Red copper protein nitrosocyanin {Nitrosomonas eur 95.93
d1shxa1138 Ephrin-a5 {Mouse (Mus musculus) [TaxId: 10090]} 95.05
d2cuaa_122 Cytochrome c oxidase {Thermus thermophilus, ba3 ty 94.83
d1fwxa1132 Nitrous oxide reductase, C-terminal domain {Paraco 94.33
d1ikop_141 Ephrin-b2 ectodomain {Mouse (Mus musculus) [TaxId: 93.44
d1kbva1151 Nitrite reductase, NIR {Neisseria gonorrhoeae, Ani 90.63
d1qnia1131 Nitrous oxide reductase, C-terminal domain {Pseudo 90.52
d2bw4a1157 Nitrite reductase, NIR {Alcaligenes xylosoxidans [ 90.41
d1oe2a1159 Nitrite reductase, NIR {Alcaligenes xylosoxidans [ 90.17
d1jzga_128 Azurin {Pseudomonas aeruginosa [TaxId: 287]} 89.48
d1nwpa_128 Azurin {Pseudomonas putida [TaxId: 303]} 89.25
d1aoza1129 Ascorbate oxidase {Zucchini (Cucurbita pepo var. m 88.88
d1mzya1153 Nitrite reductase, NIR {Rhodobacter sphaeroides [T 88.01
d1kcwa2146 Ceruloplasmin {Human (Homo sapiens) [TaxId: 9606]} 81.27
>d2cbpa_ b.6.1.1 (A:) Plantacyanin {Cucumber (Cucumis sativus) [TaxId: 3659]} Back     information, alignment and structure
class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plantacyanin
species: Cucumber (Cucumis sativus) [TaxId: 3659]

Probab=100.00  E-value=4.4e-36  Score=221.72  Aligned_cols=96  Identities=33%  Similarity=0.613  Sum_probs=88.8

Q ss_pred             cEEEEcCCCCCCCCCCCchhhcCCCCEEeCCEEEEEeCCCCCCCCCcceEEeCCcccCCcCCCCCccceeeecCCCCcce
Q 037561           60 SKIVVGGSDNWHFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSVYQLPNLWSYLRCDLSRAKMIANTTQGGGDGF  139 (179)
Q Consensus        60 ~~~~VGg~~GW~~~~~Yt~WA~~~ktF~VGDtLvF~Y~~~~~~~~~HsV~~V~~~~~Yd~C~~s~~~~i~~~~~G~~~~f  139 (179)
                      ..|+|||+.||++  +|++||++ ++|++||+|+|+|+++     .|+|+|| ++++|++|+.++|  +..+++|++   
T Consensus         1 A~y~VGg~~GW~~--~y~~Wa~~-~~F~vGD~LvF~y~~~-----~h~V~~V-~~~~Y~~C~~~~~--~~~~~~G~~---   66 (96)
T d2cbpa_           1 AVYVVGGSGGWTF--NTESWPKG-KRFRAGDILLFNYNPS-----MHNVVVV-NQGGFSTCNTPAG--AKVYTSGRD---   66 (96)
T ss_dssp             CEEETTGGGCSCS--SCTTTTTT-CCBCTTCEEEEECCTT-----TCCEEEE-CHHHHHHTCCCTT--CEEECSSEE---
T ss_pred             CEEEcCCCCCCCc--CHHHHhCC-CcEecCCEEEEecCCC-----CceEEEE-ChHHcCccCCCCC--cccccCCCe---
Confidence            3689999999985  69999995 8999999999999998     7999999 9999999999987  888899987   


Q ss_pred             EEEecCcccEEEEeCCCCCCCCcCCceEEEEEec
Q 037561          140 EFVLKRWLPYYFACGERGGFHCREGRMKFMVLPL  173 (179)
Q Consensus       140 ~v~L~~~G~~YFiCg~~~g~HC~~GqMKlaV~v~  173 (179)
                      .|+|++ |++||||+.+  +||++| |||+|+|+
T Consensus        67 ~v~L~~-G~~YFic~~~--~hC~~G-~Kl~V~Vl   96 (96)
T d2cbpa_          67 QIKLPK-GQSYFICNFP--GHCQSG-MKIAVNAL   96 (96)
T ss_dssp             EEECCS-EEEEEECCST--TTGGGT-CEEEEEEC
T ss_pred             EEEeCC-CCCEEEeCCC--CcCcCC-CEEEEEEC
Confidence            899986 9999999999  999999 89999985
>d1ws8a_ b.6.1.1 (A:) Mavicyanin {Zucchini (Cucurbita pepo) [TaxId: 3663]} Back     information, alignment and structure
>d1jera_ b.6.1.1 (A:) Stellacyanin {Cucumber (Cucumis sativus) [TaxId: 3659]} Back     information, alignment and structure
>d1f56a_ b.6.1.1 (A:) Plantacyanin {Spinach (Spinacia oleracea) [TaxId: 3562]} Back     information, alignment and structure
>d1bypa_ b.6.1.1 (A:) Plastocyanin {White campion (Silene pratensis) [TaxId: 52853]} Back     information, alignment and structure
>d1iuza_ b.6.1.1 (A:) Plastocyanin {Ulva pertusa, a sea lettuce [TaxId: 3120]} Back     information, alignment and structure
>d2plta_ b.6.1.1 (A:) Plastocyanin {Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]} Back     information, alignment and structure
>d1plca_ b.6.1.1 (A:) Plastocyanin {Poplar (Populus nigra), variant italica [TaxId: 3691]} Back     information, alignment and structure
>d2q5ba1 b.6.1.1 (A:1-105) Plastocyanin {Cyanobacterium (Phormidium laminosum) [TaxId: 32059]} Back     information, alignment and structure
>d2cj3a1 b.6.1.1 (A:1-105) Plastocyanin {Anabaena variabilis [TaxId: 1172]} Back     information, alignment and structure
>d1adwa_ b.6.1.1 (A:) Pseudoazurin {Thiosphaera pantotropha [TaxId: 82367]} Back     information, alignment and structure
>d1kdja_ b.6.1.1 (A:) Plastocyanin {Fern (Adiantum capillus-veneris) [TaxId: 13818]} Back     information, alignment and structure
>d1paza_ b.6.1.1 (A:) Pseudoazurin {Alcaligenes faecalis, strain s-6 [TaxId: 511]} Back     information, alignment and structure
>d2jxma1 b.6.1.1 (A:1-97) Plastocyanin {Photosynthetic prokaryote (Prochlorothrix hollandica) [TaxId: 1223]} Back     information, alignment and structure
>d1bqka_ b.6.1.1 (A:) Pseudoazurin {Achromobacter cycloclastes [TaxId: 223]} Back     information, alignment and structure
>d1qhqa_ b.6.1.1 (A:) Auracyanin {Chloroflexus aurantiacus [TaxId: 1108]} Back     information, alignment and structure
>d1pmya_ b.6.1.1 (A:) Pseudoazurin {Methylobacterium extorquens, strain am1 [TaxId: 408]} Back     information, alignment and structure
>d1pcsa_ b.6.1.1 (A:) Plastocyanin {Cyanobacterium (Synechocystis sp.), pcc 6803 [TaxId: 1143]} Back     information, alignment and structure
>d1bxua_ b.6.1.1 (A:) Plastocyanin {Cyanobacterium (Synechocystis sp.), pcc 7942 [TaxId: 1143]} Back     information, alignment and structure
>d2ov0a1 b.6.1.1 (A:1-105) Amicyanin {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1id2a_ b.6.1.1 (A:) Amicyanin {Paracoccus versutus (Thiobacillus versutus) [TaxId: 34007]} Back     information, alignment and structure
>d1e30a_ b.6.1.1 (A:) Rusticyanin {Thiobacillus ferrooxidans [TaxId: 920]} Back     information, alignment and structure
>d1cuoa_ b.6.1.1 (A:) Azurin {Methylomonas sp. j [TaxId: 32038]} Back     information, alignment and structure
>d2ccwa1 b.6.1.1 (A:1-129) Azurin {Alcaligenes xylosoxidans, NCIMB (11015), different isoforms [TaxId: 85698]} Back     information, alignment and structure
>d1ibya_ b.6.1.4 (A:) Red copper protein nitrosocyanin {Nitrosomonas europaea [TaxId: 915]} Back     information, alignment and structure
>d1shxa1 b.6.1.5 (A:32-170) Ephrin-a5 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cuaa_ b.6.1.2 (A:) Cytochrome c oxidase {Thermus thermophilus, ba3 type [TaxId: 274]} Back     information, alignment and structure
>d1fwxa1 b.6.1.4 (A:452-581) Nitrous oxide reductase, C-terminal domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1ikop_ b.6.1.5 (P:) Ephrin-b2 ectodomain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1kbva1 b.6.1.3 (A:13-163) Nitrite reductase, NIR {Neisseria gonorrhoeae, AniA [TaxId: 485]} Back     information, alignment and structure
>d1qnia1 b.6.1.4 (A:451-581) Nitrous oxide reductase, C-terminal domain {Pseudomonas nautica [TaxId: 2743]} Back     information, alignment and structure
>d2bw4a1 b.6.1.3 (A:8-164) Nitrite reductase, NIR {Alcaligenes xylosoxidans [TaxId: 85698]} Back     information, alignment and structure
>d1oe2a1 b.6.1.3 (A:1-159) Nitrite reductase, NIR {Alcaligenes xylosoxidans [TaxId: 85698]} Back     information, alignment and structure
>d1jzga_ b.6.1.1 (A:) Azurin {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1nwpa_ b.6.1.1 (A:) Azurin {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1aoza1 b.6.1.3 (A:1-129) Ascorbate oxidase {Zucchini (Cucurbita pepo var. medullosa) [TaxId: 3663]} Back     information, alignment and structure
>d1mzya1 b.6.1.3 (A:41-193) Nitrite reductase, NIR {Rhodobacter sphaeroides [TaxId: 1063]} Back     information, alignment and structure
>d1kcwa2 b.6.1.3 (A:193-338) Ceruloplasmin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure