Citrus Sinensis ID: 037564

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90---
Protein Sequence
FSGCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDD
Secondary Structure (PSIPRED)
ccEEEEEEccccccHHHHHHHHHccccccccccEEEEEEEcccccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHccccEEEEEEEc
Secondary Structure Prediction (SSPRO)
ccccccEEccccccHHHHHHHHHcccHHHHcEcEEEEEEEcccccHHHHHHHHHHHHccccHccccccccHHHHHHHHHHHHccccEEEEEcc
Coil and Loop (DISEMBL)
fsgckpildsssfdktaftadtynnnhvkfyFDCHAWVRVSISYDFRMVLDDIiksvmppsrvsviigedyQLKKSILRDYLTNKKYFIVLDD
Flexible Loop (DISEMBL)
fsgckpildsssfdkTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKsvmppsrvsviigedyqlkksilrdyltnkkyfivldd
Low Complexity Region (SEG)
FSGCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDD
Disordered region (IsUnstruct)
**************KTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVL**
Disordered Region (DISOPRED)
FSGCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSV***************LKKSILRDYLTNKKYFIVLDD
Disordered Region (DISEMBL)
FSGCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDD
Disordered Region (DISPRO)
*SGCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDD
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
FSGCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDD
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	93	2.2.26 [Sep-21-2011]
Q7XA40	992	Putative disease resistan	N/A	no	0.892	0.083	0.292	0.0004
Q39214	926	Disease resistance protei	yes	no	0.849	0.085	0.292	0.0005

>sp|Q7XA40|RGA3_SOLBU Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2

 Score = 43.5 bits (101), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 6/89 (6%)

Query: 6   PILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSV 65
           PIL      KT      +N+  +  +F+   WV VS  +D + ++  I++S+   S    
Sbjct: 179 PILGMGGLGKTTLAQMVFNDQRITEHFNLKIWVCVSDDFDEKRLIKAIVESIEGKS---- 234

Query: 66  IIGE-DYQLKKSILRDYLTNKKYFIVLDD 93
            +G+ D    +  L++ L  K+YF+VLDD
Sbjct: 235 -LGDMDLAPLQKKLQELLNGKRYFLVLDD 262

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.
Solanum bulbocastanum (taxid: 147425)

>sp|Q39214|RPM1_ARATH Disease resistance protein RPM1 OS=Arabidopsis thaliana GN=RPM1 PE=1 SV=1

 Score = 43.1 bits (100), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 3/82 (3%)

Query: 15  KTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSV---IIGEDY 71
           KT  +A+ + +  V+ +F+ +AWV +S SY    V   +IK     +   +   +    Y
Sbjct: 206 KTTLSANIFKSQSVRRHFESYAWVTISKSYVIEDVFRTMIKEFYKEADTQIPAELYSLGY 265

Query: 72  QLKKSILRDYLTNKKYFIVLDD 93
           +     L +YL +K+Y +VLDD
Sbjct: 266 RELVEKLVEYLQSKRYIVVLDD 287

Disease resistance (R) protein that specifically recognizes the AvrRpm1 type III effector avirulence protein from Pseudomonas syringae. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Acts via its interaction with RIN4, and probably triggers the plant resistance when RIN4 is phosphorylated by AvrRpm1. It is then degraded at the onset of the hypersensitive response.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	93
413934759	960	hypothetical protein ZEAMMB73_364544 [Ze	0.935	0.090	0.366	1e-07
359489148	897	PREDICTED: probable disease resistance R	0.924	0.095	0.402	2e-07
413934758	944	hypothetical protein ZEAMMB73_536170 [Ze	0.935	0.092	0.366	3e-07
359489158	531	PREDICTED: putative disease resistance p	0.924	0.161	0.413	3e-07
297744819	597	unnamed protein product [Vitis vinifera]	0.924	0.144	0.413	4e-07
359489156	899	PREDICTED: probable disease resistance p	0.924	0.095	0.402	4e-07
297744817	543	unnamed protein product [Vitis vinifera]	0.924	0.158	0.390	5e-07
147860533	331	hypothetical protein VITISV_034529 [Viti	0.924	0.259	0.402	5e-07
147839260	816	hypothetical protein VITISV_033801 [Viti	0.924	0.105	0.390	5e-07
255577491	860	leucine-rich repeat containing protein,	0.892	0.096	0.340	6e-07

>gi|413934759|gb|AFW69310.1| hypothetical protein ZEAMMB73_364544 [Zea mays]

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 3/90 (3%)

Query: 7   ILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVI 66
           IL      KTA  +  Y N  +   FDCHAWV VS +Y    +L +II  ++   R S+ 
Sbjct: 200 ILGMGGLGKTAIASTVYKNQKIITSFDCHAWVIVSQTYQVEELLREIINQLIIKERASMA 259

Query: 67  IGEDYQLKK---SILRDYLTNKKYFIVLDD 93
            G     +     +++ YL +KKYF+VLDD
Sbjct: 260 SGFMTMSRMRLVEVIQSYLRDKKYFVVLDD 289

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359489148|ref|XP_003633887.1| PREDICTED: probable disease resistance RPP8-like protein 4-like [Vitis vinifera]

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/87 (40%), Positives = 44/87 (50%), Gaps = 1/87 (1%)

Query: 7   ILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVI 66
           I+      KT      YN+N V+  FDCHAW+ VS  Y  R +L  +   V   S     
Sbjct: 181 IVGMGGLGKTTLAKKVYNDNDVRQCFDCHAWIYVSQEYTIRELLLGVAVCVRILSEEERS 240

Query: 67  IGEDYQLKKSILRDYLTNKKYFIVLDD 93
             ++ +L    LRDYLT KKY IVLDD
Sbjct: 241 KMDESELGDR-LRDYLTTKKYLIVLDD 266

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413934758|gb|AFW69309.1| hypothetical protein ZEAMMB73_536170 [Zea mays]

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 3/90 (3%)

Query: 7   ILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVI 66
           IL      KTA  +  Y N  +   FDCHAWV VS +Y    +L +II  ++   R S+ 
Sbjct: 193 ILGMGGLGKTAVASTVYKNQKIITSFDCHAWVIVSQTYQVEELLREIINQLIIKERASME 252

Query: 67  IGEDYQLK---KSILRDYLTNKKYFIVLDD 93
            G     +     +++ YL +KKYF+VLDD
Sbjct: 253 SGFMTMSRIRLVEVIQSYLQDKKYFVVLDD 282

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359489158|ref|XP_003633890.1| PREDICTED: putative disease resistance protein At1g50180-like [Vitis vinifera]

 Score = 58.9 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/87 (41%), Positives = 43/87 (49%), Gaps = 1/87 (1%)

Query: 7   ILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVI 66
           I+      KT      YN+N V+  FDCHAW+ VS  Y  R +L  I   V   S     
Sbjct: 182 IVGMGGLGKTTLAKKVYNDNDVQQCFDCHAWIYVSQEYTIRELLLGIAVRVGILSEEERS 241

Query: 67  IGEDYQLKKSILRDYLTNKKYFIVLDD 93
              +  L  S LRDYLT KKY IV+DD
Sbjct: 242 KMNESDLGNS-LRDYLTTKKYLIVMDD 267

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744819|emb|CBI38087.3| unnamed protein product [Vitis vinifera]

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 36/87 (41%), Positives = 43/87 (49%), Gaps = 1/87 (1%)

Query: 7   ILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVI 66
           I+      KT      YN+N V+  FDCHAW+ VS  Y  R +L  I   V   S     
Sbjct: 182 IVGMGGLGKTTLAKKVYNDNDVQQCFDCHAWIYVSQEYTIRELLLGIAVRVGILSEEERS 241

Query: 67  IGEDYQLKKSILRDYLTNKKYFIVLDD 93
              +  L  S LRDYLT KKY IV+DD
Sbjct: 242 KMNESDLGNS-LRDYLTTKKYLIVMDD 267

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359489156|ref|XP_003633889.1| PREDICTED: probable disease resistance protein RDL6/RF9-like [Vitis vinifera]

 Score = 58.5 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/87 (40%), Positives = 43/87 (49%), Gaps = 1/87 (1%)

Query: 7   ILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVI 66
           I+      KT      YN+N V+  FDCHAW+ VS  Y  R +L  +   V   S     
Sbjct: 182 IVGMGGLGKTTLAKKVYNDNDVQQCFDCHAWIYVSQEYTIRELLLGVAVRVGILSEEERS 241

Query: 67  IGEDYQLKKSILRDYLTNKKYFIVLDD 93
              +  L  S LRDYLT KKY IV+DD
Sbjct: 242 KMNESDLGNS-LRDYLTTKKYLIVMDD 267

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744817|emb|CBI38085.3| unnamed protein product [Vitis vinifera]

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 34/87 (39%), Positives = 43/87 (49%), Gaps = 1/87 (1%)

Query: 7   ILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVI 66
           I+      KT      YN+N V+  FDCHAW+ VS  Y  R +L  +   V   S     
Sbjct: 182 IVGMGGLGKTTLAKKVYNDNDVRQCFDCHAWIYVSQEYTIRELLLGVAVCVRILSEEERS 241

Query: 67  IGEDYQLKKSILRDYLTNKKYFIVLDD 93
              +  L  S LRDYLT +KY IV+DD
Sbjct: 242 KMNESDLGNS-LRDYLTTRKYLIVMDD 267

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147860533|emb|CAN81877.1| hypothetical protein VITISV_034529 [Vitis vinifera]

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 35/87 (40%), Positives = 44/87 (50%), Gaps = 1/87 (1%)

Query: 7   ILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVI 66
           I+      KT      YN+N V+  FDCHAW+ VS  Y  R +L  +   V   S     
Sbjct: 181 IVGMGGLGKTTLAKKVYNDNDVRQCFDCHAWIYVSQEYTIRELLLGVAVCVRILSEEERS 240

Query: 67  IGEDYQLKKSILRDYLTNKKYFIVLDD 93
             ++ +L    LRDYLT KKY IVLDD
Sbjct: 241 KMDESELGDR-LRDYLTTKKYLIVLDD 266

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147839260|emb|CAN67961.1| hypothetical protein VITISV_033801 [Vitis vinifera]

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 34/87 (39%), Positives = 42/87 (48%), Gaps = 1/87 (1%)

Query: 7   ILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVI 66
           I+      KT      YN+N V   FDCHAW+ VS  Y  R +L  +   V   S     
Sbjct: 182 IVGMGGLGKTTLAKKVYNDNDVXQCFDCHAWIYVSQEYTIRELLLGVAVCVRXLSEEERS 241

Query: 67  IGEDYQLKKSILRDYLTNKKYFIVLDD 93
              + +L    LRDYLT KKY IV+DD
Sbjct: 242 XMNESELGNR-LRDYLTTKKYLIVMDD 267

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577491|ref|XP_002529624.1| leucine-rich repeat containing protein, putative [Ricinus communis] gi|223530909|gb|EEF32769.1| leucine-rich repeat containing protein, putative [Ricinus communis]

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 32/94 (34%), Positives = 53/94 (56%), Gaps = 11/94 (11%)

Query: 6   PILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSV 65
           PI+      KTA     YN+  V+ YF+   W+ VS  ++ + +++ IIKS +     S 
Sbjct: 196 PIVGIGGLGKTALAKLVYNDERVERYFELKMWICVSDDFNIKKLMEKIIKSAIN----ST 251

Query: 66  IIGEDY------QLKKSILRDYLTNKKYFIVLDD 93
             GE+Y      QL++ ++R+ ++ KKYF+VLDD
Sbjct: 252 TFGENYSSLELDQLQR-VMREQISEKKYFLVLDD 284

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	93
TAIR|locus:504956483	847	AT3G46730 [Arabidopsis thalian	0.924	0.101	0.351	3.4e-05
TAIR|locus:2077572	926	RPM1 "RESISTANCE TO P. SYRINGA	0.838	0.084	0.325	0.00027

TAIR|locus:504956483 AT3G46730 [Arabidopsis thaliana (taxid:3702)]

 Score = 110 (43.8 bits), Expect = 3.4e-05, P = 3.4e-05
 Identities = 32/91 (35%), Positives = 42/91 (46%)

Query:     7 ILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKS--VMPPSRVS 64
             I       KTA     YN+  VK  FDC AW  VS  Y  R +L  II+S  ++    + 
Sbjct:   190 IFGMGGLGKTALARKLYNSGDVKRRFDCRAWTYVSQEYKTRDILIRIIRSLGIVSAEEME 249

Query:    65 VI--IGEDYQLKKSILRDYLTNKKYFIVLDD 93
              I    ED +L+   L   L  K Y +V+DD
Sbjct:   250 KIKMFEEDEELEV-YLYGLLEGKNYMVVVDD 279

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2077572 RPM1 "RESISTANCE TO P. SYRINGAE PV MACULICOLA 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 102 (41.0 bits), Expect = 0.00027, P = 0.00027
 Identities = 27/83 (32%), Positives = 45/83 (54%)

Query:    15 KTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIGEDYQL- 73
             KT  +A+ + +  V+ +F+ +AWV +S SY    V   +IK     +    I  E Y L 
Sbjct:   206 KTTLSANIFKSQSVRRHFESYAWVTISKSYVIEDVFRTMIKEFYKEADTQ-IPAELYSLG 264

Query:    74 -KKSI--LRDYLTNKKYFIVLDD 93
              ++ +  L +YL +K+Y +VLDD
Sbjct:   265 YRELVEKLVEYLQSKRYIVVLDD 287


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.140   0.426    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       93        93   0.00091  102 3  11 22  0.44    29
                                                     29  0.41    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  557 (59 KB)
  Total size of DFA:  114 KB (2075 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.93u 0.11s 11.04t   Elapsed:  00:00:01
  Total cpu time:  10.93u 0.11s 11.04t   Elapsed:  00:00:01
  Start:  Tue May 21 02:01:23 2013   End:  Tue May 21 02:01:24 2013

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0043531 "ADP binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0000166 "nucleotide binding" evidence=ISS

GO:0009626 "plant-type hypersensitive response" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	93
pfam00931	285	pfam00931, NB-ARC, NB-ARC domain	7e-07

>gnl|CDD|216202 pfam00931, NB-ARC, NB-ARC domain

 Score = 45.0 bits (107), Expect = 7e-07
 Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 2/79 (2%)

Query: 15  KTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIGEDYQLK 74
           KT      YN++ V  +FD  AWV VS +Y    +  DI++ +       V   ++    
Sbjct: 32  KTTLAKQIYNDDSVGGHFDSVAWVVVSKTYTEFRLQKDILQELGLDDSDWV--EKNESEL 89

Query: 75  KSILRDYLTNKKYFIVLDD 93
              +++ L  K++ +VLDD
Sbjct: 90  AVKIKEALLRKRFLLVLDD 108

Length = 285

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	93
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.9
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	99.89
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.64
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	99.48
cd01128	249	rho_factor Transcription termination factor rho is	99.46
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	99.36
PRK00411	394	cdc6 cell division control protein 6; Reviewed	99.34
PRK09376	416	rho transcription termination factor Rho; Provisio	99.31
TIGR02928	365	orc1/cdc6 family replication initiation protein. M	99.31
TIGR00767	415	rho transcription termination factor Rho. Members	99.24
PF05729	166	NACHT: NACHT domain	99.16
COG1474	366	CDC6 Cdc6-related protein, AAA superfamily ATPase	99.06
PRK04841	903	transcriptional regulator MalT; Provisional	98.95
smart00382	148	AAA ATPases associated with a variety of cellular	98.9
PF13173	128	AAA_14: AAA domain	98.89
PTZ00202	550	tuzin; Provisional	98.88
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	98.87
PRK08118	167	topology modulation protein; Reviewed	98.86
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	98.84
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	98.84
PRK12608	380	transcription termination factor Rho; Provisional	98.83
PRK07261	171	topology modulation protein; Provisional	98.79
PRK09361	225	radB DNA repair and recombination protein RadB; Pr	98.78
PRK11331	459	5-methylcytosine-specific restriction enzyme subun	98.77
PTZ00112	1164	origin recognition complex 1 protein; Provisional	98.76
PRK08116	268	hypothetical protein; Validated	98.76
TIGR02237	209	recomb_radB DNA repair and recombination protein R	98.75
PF00004	132	AAA: ATPase family associated with various cellula	98.74
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	98.72
cd01123	235	Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r	98.71
PF01637	234	Arch_ATPase: Archaeal ATPase; InterPro: IPR011579	98.71
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	98.69
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	98.67
KOG0744	423	consensus AAA+-type ATPase [Posttranslational modi	98.66
KOG2543	438	consensus Origin recognition complex, subunit 5 [R	98.63
TIGR02012	321	tigrfam_recA protein RecA. This model describes or	98.63
cd00983	325	recA RecA is a bacterial enzyme which has roles in	98.62
cd01133	274	F1-ATPase_beta F1 ATP synthase beta subunit, nucle	98.62
cd01394	218	radB RadB. The archaeal protein radB shares simila	98.61
COG2256	436	MGS1 ATPase related to the helicase subunit of the	98.61
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	98.6
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	98.6
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	98.6
PRK08233	182	hypothetical protein; Provisional	98.58
PRK09354	349	recA recombinase A; Provisional	98.58
PRK05541	176	adenylylsulfate kinase; Provisional	98.57
KOG2028	554	consensus ATPase related to the helicase subunit o	98.56
PRK12377	248	putative replication protein; Provisional	98.56
cd01393	226	recA_like RecA is a bacterial enzyme which has rol	98.56
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	98.55
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	98.54
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	98.54
PRK07952	244	DNA replication protein DnaC; Validated	98.52
PRK14088	440	dnaA chromosomal replication initiation protein; P	98.51
PRK06762	166	hypothetical protein; Provisional	98.51
PF08423	256	Rad51: Rad51; InterPro: IPR013632 This domain is f	98.5
cd03115	173	SRP The signal recognition particle (SRP) mediates	98.49
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	98.48
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	98.48
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	98.47
COG1484	254	DnaC DNA replication protein [DNA replication, rec	98.46
PRK08939	306	primosomal protein DnaI; Reviewed	98.46
PTZ00301	210	uridine kinase; Provisional	98.45
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	98.45
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	98.45
PRK08181	269	transposase; Validated	98.44
PRK06921	266	hypothetical protein; Provisional	98.44
PRK04301	317	radA DNA repair and recombination protein RadA; Va	98.42
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	98.41
PRK13342	413	recombination factor protein RarA; Reviewed	98.41
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	98.4
PRK00771	437	signal recognition particle protein Srp54; Provisi	98.39
PRK12422	445	chromosomal replication initiation protein; Provis	98.39
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	98.39
PRK04296	190	thymidine kinase; Provisional	98.39
PLN03187	344	meiotic recombination protein DMC1 homolog; Provis	98.38
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	98.37
PRK10867	433	signal recognition particle protein; Provisional	98.37
TIGR02238	313	recomb_DMC1 meiotic recombinase Dmc1. This model d	98.36
TIGR02236	310	recomb_radA DNA repair and recombination protein R	98.36
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	98.36
cd02024	187	NRK1 Nicotinamide riboside kinase (NRK) is an enzy	98.36
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.36
TIGR00959	428	ffh signal recognition particle protein. This mode	98.36
PRK06835	329	DNA replication protein DnaC; Validated	98.35
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	98.35
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	98.34
PRK05480	209	uridine/cytidine kinase; Provisional	98.33
TIGR02239	316	recomb_RAD51 DNA repair protein RAD51. This eukary	98.33
PRK00149	450	dnaA chromosomal replication initiation protein; R	98.32
PF00154	322	RecA: recA bacterial DNA recombination protein; In	98.32
PRK06526	254	transposase; Provisional	98.32
PRK04040	188	adenylate kinase; Provisional	98.32
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	98.32
PRK09183	259	transposase/IS protein; Provisional	98.31
TIGR00235	207	udk uridine kinase. Model contains a number of lon	98.31
PRK08972	444	fliI flagellum-specific ATP synthase; Validated	98.31
PRK04195	482	replication factor C large subunit; Provisional	98.3
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	98.3
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	98.3
TIGR00064	272	ftsY signal recognition particle-docking protein F	98.3
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	98.3
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	98.29
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	98.29
PRK09519	790	recA DNA recombination protein RecA; Reviewed	98.29
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	98.28
PTZ00035	337	Rad51 protein; Provisional	98.28
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	98.28
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	98.28
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	98.28
cd01122	271	GP4d_helicase GP4d_helicase is a homohexameric 5'-	98.27
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	98.27
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	98.27
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	98.27
PRK06696	223	uridine kinase; Validated	98.27
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	98.27
PRK08149	428	ATP synthase SpaL; Validated	98.26
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	98.26
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	98.26
PRK06067	234	flagellar accessory protein FlaH; Validated	98.26
PF08433	270	KTI12: Chromatin associated protein KTI12 ; InterP	98.25
PRK03839	180	putative kinase; Provisional	98.25
PRK03992	389	proteasome-activating nucleotidase; Provisional	98.25
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	98.25
COG0468	279	RecA RecA/RadA recombinase [DNA replication, recom	98.25
PRK07594	433	type III secretion system ATPase SsaN; Validated	98.24
COG0467	260	RAD55 RecA-superfamily ATPases implicated in signa	98.24
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	98.24
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	98.24
PRK06893	229	DNA replication initiation factor; Validated	98.23
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	98.22
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	98.22
PRK06547	172	hypothetical protein; Provisional	98.22
cd01136	326	ATPase_flagellum-secretory_path_III Flagellum-spec	98.22
PRK06002	450	fliI flagellum-specific ATP synthase; Validated	98.22
cd01121	372	Sms Sms (bacterial radA) DNA repair protein. This	98.21
PRK14974	336	cell division protein FtsY; Provisional	98.21
PLN03186	342	DNA repair protein RAD51 homolog; Provisional	98.2
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	98.2
PRK08084	235	DNA replication initiation factor; Provisional	98.19
PRK00131	175	aroK shikimate kinase; Reviewed	98.19
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	98.19
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	98.18
PRK14087	450	dnaA chromosomal replication initiation protein; P	98.18
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	98.18
PRK00300	205	gmk guanylate kinase; Provisional	98.18
PF05673	249	DUF815: Protein of unknown function (DUF815); Inte	98.18
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	98.18
PRK13975	196	thymidylate kinase; Provisional	98.18
PF00625	183	Guanylate_kin: Guanylate kinase; InterPro: IPR0081	98.17
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	98.17
PRK00625	173	shikimate kinase; Provisional	98.17
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	98.17
PRK07667	193	uridine kinase; Provisional	98.16
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	98.15
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	98.15
PF00006	215	ATP-synt_ab: ATP synthase alpha/beta family, nucle	98.15
PRK06217	183	hypothetical protein; Validated	98.15
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	98.14
PRK06936	439	type III secretion system ATPase; Provisional	98.14
PRK09280	463	F0F1 ATP synthase subunit beta; Validated	98.13
PRK11823	446	DNA repair protein RadA; Provisional	98.13
PRK13947	171	shikimate kinase; Provisional	98.13
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	98.13
TIGR03498	418	FliI_clade3 flagellar protein export ATPase FliI.	98.13
PRK05642	234	DNA replication initiation factor; Validated	98.13
PRK10416	318	signal recognition particle-docking protein FtsY;	98.12
TIGR03496	411	FliI_clade1 flagellar protein export ATPase FliI.	98.12
PRK08927	442	fliI flagellum-specific ATP synthase; Validated	98.12
cd01135	276	V_A-ATPase_B V/A-type ATP synthase (non-catalytic)	98.12
PRK12597	461	F0F1 ATP synthase subunit beta; Provisional	98.12
cd01672	200	TMPK Thymidine monophosphate kinase (TMPK), also k	98.11
PRK09099	441	type III secretion system ATPase; Provisional	98.11
PRK05922	434	type III secretion system ATPase; Validated	98.11
PRK12678	672	transcription termination factor Rho; Provisional	98.11
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	98.11
PF07726	131	AAA_3: ATPase family associated with various cellu	98.11
PRK14530	215	adenylate kinase; Provisional	98.11
PF00910	107	RNA_helicase: RNA helicase; InterPro: IPR000605 He	98.1
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	98.1
PRK06761	282	hypothetical protein; Provisional	98.1
PF12775	272	AAA_7: P-loop containing dynein motor region D3; P	98.1
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	98.09
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	98.09
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	98.09
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	98.09
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	98.09
cd01132	274	F1_ATPase_alpha F1 ATP synthase alpha, central dom	98.09
PTZ00185	574	ATPase alpha subunit; Provisional	98.09
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	98.09
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	98.08
COG0003	322	ArsA Predicted ATPase involved in chromosome parti	98.08
PHA00729	226	NTP-binding motif containing protein	98.08
COG1428	216	Deoxynucleoside kinases [Nucleotide transport and	98.07
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	98.07
TIGR03575	340	selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryoti	98.07
PRK00889	175	adenylylsulfate kinase; Provisional	98.06
PRK06793	432	fliI flagellum-specific ATP synthase; Validated	98.06
PHA02530	300	pseT polynucleotide kinase; Provisional	98.06
cd02029	277	PRK_like Phosphoribulokinase-like (PRK-like) is a	98.06
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	98.06
PRK13949	169	shikimate kinase; Provisional	98.06
KOG0735	952	consensus AAA+-type ATPase [Posttranslational modi	98.06
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	98.05
PRK03731	171	aroL shikimate kinase II; Reviewed	98.05
PRK15453	290	phosphoribulokinase; Provisional	98.05
PRK14737	186	gmk guanylate kinase; Provisional	98.05
PRK05688	451	fliI flagellum-specific ATP synthase; Validated	98.05
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	98.05
smart00072	184	GuKc Guanylate kinase homologues. Active enzymes c	98.04
PRK05439	311	pantothenate kinase; Provisional	98.04
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	98.04
PRK13946	184	shikimate kinase; Provisional	98.04
PTZ00088	229	adenylate kinase 1; Provisional	98.04
cd00544	169	CobU Adenosylcobinamide kinase / adenosylcobinamid	98.04
PRK14086	617	dnaA chromosomal replication initiation protein; P	98.04
COG2255	332	RuvB Holliday junction resolvasome, helicase subun	98.03
PRK13948	182	shikimate kinase; Provisional	98.03
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	98.03
COG1066	456	Sms Predicted ATP-dependent serine protease [Postt	98.03
PRK03846	198	adenylylsulfate kinase; Provisional	98.02
PRK12339	197	2-phosphoglycerate kinase; Provisional	98.02
PRK08903	227	DnaA regulatory inactivator Hda; Validated	98.02
CHL00176	638	ftsH cell division protein; Validated	98.02
TIGR03877	237	thermo_KaiC_1 KaiC domain protein, Ph0284 family.	98.02
TIGR00763	775	lon ATP-dependent protease La. This protein is ind	98.01
PRK13768	253	GTPase; Provisional	98.01
TIGR03305	449	alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit	98.01
PRK00698	205	tmk thymidylate kinase; Validated	98.01
TIGR00041	195	DTMP_kinase thymidylate kinase. Function: phosphor	98.01
COG3903	414	Predicted ATPase [General function prediction only	98.01
TIGR00416	454	sms DNA repair protein RadA. The gene protuct code	98.01
PRK14531	183	adenylate kinase; Provisional	98.0
PRK05973	237	replicative DNA helicase; Provisional	98.0
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	98.0
PRK14738	206	gmk guanylate kinase; Provisional	98.0
COG1763	161	MobB Molybdopterin-guanine dinucleotide biosynthes	98.0
COG4240	300	Predicted kinase [General function prediction only	98.0
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	98.0
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	98.0
PLN02796	347	D-glycerate 3-kinase	97.99
PRK08472	434	fliI flagellum-specific ATP synthase; Validated	97.99
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	97.99
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	97.99
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	97.99
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	97.99
TIGR03497	413	FliI_clade2 flagellar protein export ATPase FliI.	97.99
COG3267	269	ExeA Type II secretory pathway, component ExeA (pr	97.99
PF02374	305	ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_	97.99
PLN03025	319	replication factor C subunit; Provisional	97.98
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	97.98
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	97.98
PLN02924	220	thymidylate kinase	97.98
PRK08099	399	bifunctional DNA-binding transcriptional repressor	97.98
PRK08533	230	flagellar accessory protein FlaH; Reviewed	97.97
PRK14963	504	DNA polymerase III subunits gamma and tau; Provisi	97.97
PF00005	137	ABC_tran: ABC transporter This structure is on hol	97.97
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	97.97
TIGR02546	422	III_secr_ATP type III secretion apparatus H+-trans	97.97
PRK05800	170	cobU adenosylcobinamide kinase/adenosylcobinamide-	97.97
PRK06620	214	hypothetical protein; Validated	97.96
PRK04182	180	cytidylate kinase; Provisional	97.96
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	97.96
PRK05057	172	aroK shikimate kinase I; Reviewed	97.95
TIGR00602	637	rad24 checkpoint protein rad24. This family is bas	97.95
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	97.95
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	97.95
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	97.95
PRK08727	233	hypothetical protein; Validated	97.95
PRK14527	191	adenylate kinase; Provisional	97.95
TIGR01026	440	fliI_yscN ATPase FliI/YscN family. This family of	97.94
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	97.94
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	97.94
PRK09825	176	idnK D-gluconate kinase; Provisional	97.93
PRK08356	195	hypothetical protein; Provisional	97.93
TIGR03878	259	thermo_KaiC_2 KaiC domain protein, AF_0795 family.	97.93
CHL00195	489	ycf46 Ycf46; Provisional	97.93
PRK06820	440	type III secretion system ATPase; Validated	97.93
PLN02200	234	adenylate kinase family protein	97.93
TIGR02173	171	cyt_kin_arch cytidylate kinase, putative. Proteins	97.93
COG0703	172	AroK Shikimate kinase [Amino acid transport and me	97.92
COG0593	408	DnaA ATPase involved in DNA replication initiation	97.92
PF13086	236	AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV	97.92
PRK07721	438	fliI flagellum-specific ATP synthase; Validated	97.92
TIGR00678	188	holB DNA polymerase III, delta' subunit. At positi	97.91
COG0529	197	CysC Adenylylsulfate kinase and related kinases [I	97.91
PRK07196	434	fliI flagellum-specific ATP synthase; Validated	97.9
PRK14532	188	adenylate kinase; Provisional	97.9
TIGR00176	155	mobB molybdopterin-guanine dinucleotide biosynthes	97.9
PRK14493	274	putative bifunctional molybdopterin-guanine dinucl	97.9
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	97.9
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	97.9
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	97.9
KOG1969	877	consensus DNA replication checkpoint protein CHL12	97.89
TIGR01041	458	ATP_syn_B_arch ATP synthase archaeal, B subunit. A	97.89
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	97.89
PRK13185	270	chlL protochlorophyllide reductase iron-sulfur ATP	97.89
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	97.89
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	97.89
TIGR01039	461	atpD ATP synthase, F1 beta subunit. The sequences	97.88
PRK09087	226	hypothetical protein; Validated	97.88
PRK13233	275	nifH nitrogenase reductase; Reviewed	97.88
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	97.88
cd01134	369	V_A-ATPase_A V/A-type ATP synthase catalytic subun	97.88
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	97.87
PF14516	331	AAA_35: AAA-like domain	97.87
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	97.87
COG1157	441	FliI Flagellar biosynthesis/type III secretory pat	97.87
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	97.87
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	97.87
TIGR01040	466	V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. Th	97.86
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	97.86
COG1100	219	GTPase SAR1 and related small G proteins [General	97.86
PF06745	226	KaiC: KaiC; InterPro: IPR014774 This entry represe	97.86
PF09848	352	DUF2075: Uncharacterized conserved protein (DUF207	97.86
cd03269	210	ABC_putative_ATPase This subfamily is involved in	97.86
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	97.86
cd02022	179	DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.2	97.86
PRK10865	857	protein disaggregation chaperone; Provisional	97.86
CHL00095	821	clpC Clp protease ATP binding subunit	97.85
TIGR01287	275	nifH nitrogenase iron protein. This model describe	97.85
cd02026	273	PRK Phosphoribulokinase (PRK) is an enzyme involve	97.85
PRK13973	213	thymidylate kinase; Provisional	97.85
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	97.85
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	97.84
PRK04328	249	hypothetical protein; Provisional	97.84
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.84
PLN02348	395	phosphoribulokinase	97.84
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	97.84
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	97.84
COG0237	201	CoaE Dephospho-CoA kinase [Coenzyme metabolism]	97.84
PRK14490	369	putative bifunctional molybdopterin-guanine dinucl	97.84
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	97.84
CHL00059	485	atpA ATP synthase CF1 alpha subunit	97.84
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	97.84
TIGR00017	217	cmk cytidylate kinase. This family consists of cyt	97.83
CHL00060	494	atpB ATP synthase CF1 beta subunit	97.83
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	97.83
PRK07960	455	fliI flagellum-specific ATP synthase; Validated	97.83
PF13245	76	AAA_19: Part of AAA domain	97.83
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	97.83
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	97.83
KOG3308	225	consensus Uncharacterized protein of the uridine k	97.83
cd02034	116	CooC The accessory protein CooC, which contains a	97.83
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	97.83
PLN03046	460	D-glycerate 3-kinase; Provisional	97.83
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	97.83
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	97.82
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	97.82
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	97.82
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	97.82
PRK05896	605	DNA polymerase III subunits gamma and tau; Validat	97.82
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	97.82
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	97.82
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	97.82
cd00984	242	DnaB_C DnaB helicase C terminal domain. The hexame	97.82
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	97.81
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	97.81
TIGR03881	229	KaiC_arch_4 KaiC domain protein, PAE1156 family. M	97.81
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	97.81
PRK01184	184	hypothetical protein; Provisional	97.8
PRK13343	502	F0F1 ATP synthase subunit alpha; Provisional	97.8
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	97.8
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	97.8
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	97.8
PRK12338	319	hypothetical protein; Provisional	97.79
COG2607	287	Predicted ATPase (AAA+ superfamily) [General funct	97.79
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	97.79
KOG2227	529	consensus Pre-initiation complex, subunit CDC6, AA	97.79
CHL00181	287	cbbX CbbX; Provisional	97.79
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	97.79
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	97.79
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	97.79
cd03116	159	MobB Molybdenum is an essential trace element in t	97.79
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	97.79
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	97.78
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	97.78
PRK14529	223	adenylate kinase; Provisional	97.78
TIGR03324	497	alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit a	97.78
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	97.78
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	97.78
PRK13341	725	recombination factor protein RarA/unknown domain f	97.78
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	97.78
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	97.78
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	97.78
PF07724	171	AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR	97.78
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	97.78
TIGR03880	224	KaiC_arch_3 KaiC domain protein, AF_0351 family. T	97.77
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	97.77
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	97.77
PRK09302	509	circadian clock protein KaiC; Reviewed	97.77
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	97.77
PLN02318	656	phosphoribulokinase/uridine kinase	97.77
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	97.77
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	97.76
cd02040	270	NifH NifH gene encodes component II (iron protein)	97.76
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	97.76
cd02117	212	NifH_like This family contains the NifH (iron prot	97.76
PRK14949	944	DNA polymerase III subunits gamma and tau; Provisi	97.76
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	97.76
cd01673	193	dNK Deoxyribonucleoside kinase (dNK) catalyzes the	97.76
COG1123	539	ATPase components of various ABC-type transport sy	97.76
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	97.76
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	97.76
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	97.75
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	97.75
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	97.75
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	97.75
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	97.75
TIGR00764	608	lon_rel lon-related putative ATP-dependent proteas	97.75
PRK04196	460	V-type ATP synthase subunit B; Provisional	97.75
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	97.75
PRK05416	288	glmZ(sRNA)-inactivating NTPase; Provisional	97.75
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	97.75
PRK10908	222	cell division protein FtsE; Provisional	97.74
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	97.74
PRK00279	215	adk adenylate kinase; Reviewed	97.74
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	97.74
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	97.74
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	97.74
PLN02165	334	adenylate isopentenyltransferase	97.74
TIGR00390	441	hslU ATP-dependent protease HslVU, ATPase subunit.	97.74
COG4619	223	ABC-type uncharacterized transport system, ATPase	97.74
COG1222	406	RPT1 ATP-dependent 26S proteasome regulatory subun	97.74
PRK02496	184	adk adenylate kinase; Provisional	97.74
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	97.74
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	97.74
PRK14955	397	DNA polymerase III subunits gamma and tau; Provisi	97.74
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	97.73
PRK00440	319	rfc replication factor C small subunit; Reviewed	97.73
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	97.73
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	97.73
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	97.73
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	97.73
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	97.73
PRK09281	502	F0F1 ATP synthase subunit alpha; Validated	97.73
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	97.73
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	97.72
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	97.72
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	97.72
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	97.72
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	97.72
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	97.72
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	97.72
COG3638	258	ABC-type phosphate/phosphonate transport system, A	97.71
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	97.71
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	97.71
COG4639	168	Predicted kinase [General function prediction only	97.71
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	97.71
TIGR00101	199	ureG urease accessory protein UreG. This model rep	97.71
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	97.71
PRK07429	327	phosphoribulokinase; Provisional	97.71
COG2842	297	Uncharacterized ATPase, putative transposase [Gene	97.71
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	97.71
cd03246	173	ABCC_Protease_Secretion This family represents the	97.7
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	97.7
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	97.7
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	97.7
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	97.7
PRK13695	174	putative NTPase; Provisional	97.7
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	97.7
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	97.7
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	97.7
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	97.7
PRK13230	279	nitrogenase reductase-like protein; Reviewed	97.7
PRK14950	585	DNA polymerase III subunits gamma and tau; Provisi	97.7
TIGR01618	220	phage_P_loop phage nucleotide-binding protein. Thi	97.7
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	97.7
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	97.7
PRK14528	186	adenylate kinase; Provisional	97.7
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	97.7
PRK05201	443	hslU ATP-dependent protease ATP-binding subunit Hs	97.7
PRK10865	857	protein disaggregation chaperone; Provisional	97.69
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	97.69
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	97.69
TIGR01526	325	nadR_NMN_Atrans nicotinamide-nucleotide adenylyltr	97.69
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	97.69
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	97.69
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	97.69
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	97.69
PRK09435	332	membrane ATPase/protein kinase; Provisional	97.69
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	97.69
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	97.68
KOG2004	906	consensus Mitochondrial ATP-dependent protease PIM	97.68
cd03114	148	ArgK-like The function of this protein family is u	97.68
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	97.68
TIGR00962	501	atpA proton translocating ATP synthase, F1 alpha s	97.68
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	97.68
PRK10787	784	DNA-binding ATP-dependent protease La; Provisional	97.68
COG0125	208	Tmk Thymidylate kinase [Nucleotide transport and m	97.68
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	97.68
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	97.68
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	97.68
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	97.68
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	97.67
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	97.67
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	97.67
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	97.67
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	97.67
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	97.67

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.90  E-value=2.1e-23  Score=140.73  Aligned_cols=89  Identities=25%  Similarity=0.325  Sum_probs=78.3

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcc-cccCCCeeEEEEeCCCCCHHHHHHHHHHhhCCCCCCccccCCCHHHHHHHHHHh
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNH-VKFYFDCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDY   81 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~-~~~~f~~~~wv~~~~~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~   81 (93)
                      ++++|+||||+||||||++++++.. +.++|+..+|+++|+.++...++.+|+..++.......  +.+.+.+...|.+.
T Consensus       180 ~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~--~~~~~~~~~~i~~~  257 (889)
T KOG4658|consen  180 GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWE--DKEEDELASKLLNL  257 (889)
T ss_pred             CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccc--hhhHHHHHHHHHHH
Confidence            5899999999999999999999876 89999999999999999999999999999875333210  03457899999999


Q ss_pred             cCCCeEEEEeeC
Q 037564           82 LTNKKYFIVLDD   93 (93)
Q Consensus        82 L~~kr~LlVlDD   93 (93)
                      |+.|||+|||||
T Consensus       258 L~~krfllvLDD  269 (889)
T KOG4658|consen  258 LEGKRFLLVLDD  269 (889)
T ss_pred             hccCceEEEEec
Confidence            999999999998

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=99.89  E-value=5.2e-23  Score=124.62  Aligned_cols=91  Identities=23%  Similarity=0.364  Sum_probs=77.4

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHHHHhhCCCCCCccccCCCHHHHHHHHHHh
Q 037564            2 SGCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDY   81 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~   81 (93)
                      .++|+|+||+|+||||||.+++++..++.+|+.++|+.+++..+...++.+|+.++....... ....+.+.+...+.+.
T Consensus        19 ~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~~l~~~   97 (287)
T PF00931_consen   19 VRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSI-SDPKDIEELQDQLREL   97 (287)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STS-SCCSSHHHHHHHHHHH
T ss_pred             eEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccchhh
Confidence            478999999999999999999996558899999999999998888999999999998653211 0016788899999999


Q ss_pred             cCCCeEEEEeeC
Q 037564           82 LTNKKYFIVLDD   93 (93)
Q Consensus        82 L~~kr~LlVlDD   93 (93)
                      |.++++||||||
T Consensus        98 L~~~~~LlVlDd  109 (287)
T PF00931_consen   98 LKDKRCLLVLDD  109 (287)
T ss_dssp             HCCTSEEEEEEE
T ss_pred             hccccceeeeee
Confidence            999999999997

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>PLN03210 Resistant to P

Probab=99.64  E-value=1.4e-15  Score=105.88  Aligned_cols=82  Identities=17%  Similarity=0.299  Sum_probs=56.7

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEe---CCC-----------CC-HHHHHHHHHHhhCCCCCCcccc
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRV---SIS-----------YD-FRMVLDDIIKSVMPPSRVSVII   67 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~---~~~-----------~~-~~~ll~~il~~l~~~~~~~~~~   67 (93)
                      ++|+||||+|+||||||+.+|+  ++...|+..+|+..   ...           ++ ...++.+++.++........  
T Consensus       208 ~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~--  283 (1153)
T PLN03210        208 RMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKI--  283 (1153)
T ss_pred             EEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCccc--
Confidence            6899999999999999999999  78889998887642   111           01 12345555655542221110  


Q ss_pred             CCCHHHHHHHHHHhcCCCeEEEEeeC
Q 037564           68 GEDYQLKKSILRDYLTNKKYFIVLDD   93 (93)
Q Consensus        68 ~~~~~~l~~~l~~~L~~kr~LlVlDD   93 (93)
                       ..    ...+++.|.++|+||||||
T Consensus       284 -~~----~~~~~~~L~~krvLLVLDd  304 (1153)
T PLN03210        284 -YH----LGAMEERLKHRKVLIFIDD  304 (1153)
T ss_pred             -CC----HHHHHHHHhCCeEEEEEeC
Confidence             11    2467788999999999998

syringae 6; Provisional

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=99.48  E-value=1e-13  Score=75.50  Aligned_cols=86  Identities=16%  Similarity=0.157  Sum_probs=62.2

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhcCcccccC-----CCeeEEEEeCCCCCHHHHHHHHHHhhCCCCCCccccCCCHHHHHH
Q 037564            2 SGCKPILDSSSFDKTAFTADTYNNNHVKFY-----FDCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIGEDYQLKKS   76 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~-----f~~~~wv~~~~~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~   76 (93)
                      .+.+.|+|++|+|||++++.+.+  .....     -...+|+.+....+...+.+.+++.+..+....    .+.+.+.+
T Consensus         4 ~~~~~i~G~~G~GKT~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~----~~~~~l~~   77 (131)
T PF13401_consen    4 QRILVISGPPGSGKTTLIKRLAR--QLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSR----QTSDELRS   77 (131)
T ss_dssp             ---EEEEE-TTSSHHHHHHHHHH--HHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSST----S-HHHHHH
T ss_pred             CcccEEEcCCCCCHHHHHHHHHH--HhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCcccccc----CCHHHHHH
Confidence            46789999999999999999998  33321     234568888877799999999999998654431    46777778


Q ss_pred             HHHHhcCCC-eEEEEeeC
Q 037564           77 ILRDYLTNK-KYFIVLDD   93 (93)
Q Consensus        77 ~l~~~L~~k-r~LlVlDD   93 (93)
                      .+.+.+... ..+||+||
T Consensus        78 ~~~~~l~~~~~~~lviDe   95 (131)
T PF13401_consen   78 LLIDALDRRRVVLLVIDE   95 (131)
T ss_dssp             HHHHHHHHCTEEEEEEET
T ss_pred             HHHHHHHhcCCeEEEEeC
Confidence            888888554 45999997

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=99.46  E-value=4e-13  Score=80.51  Aligned_cols=90  Identities=11%  Similarity=-0.022  Sum_probs=58.1

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCC--CCHHHHHHHHHHhhCCCCCCcc-ccC-CCHHHHHHHH
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSIS--YDFRMVLDDIIKSVMPPSRVSV-IIG-EDYQLKKSIL   78 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~ll~~il~~l~~~~~~~~-~~~-~~~~~l~~~l   78 (93)
                      ..++|.|++|+|||||++.++++.... +|+..+|+++.+.  .+..++++.+...+-....... ... .-........
T Consensus        17 qr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~a   95 (249)
T cd01128          17 QRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEKA   95 (249)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHHH
Confidence            468899999999999999999954333 7999999987665  7889999998433221111100 000 1111222233


Q ss_pred             HHh-cCCCeEEEEeeC
Q 037564           79 RDY-LTNKKYFIVLDD   93 (93)
Q Consensus        79 ~~~-L~~kr~LlVlDD   93 (93)
                      ... -+++++++++|+
T Consensus        96 ~~~~~~G~~vll~iDe  111 (249)
T cd01128          96 KRLVEHGKDVVILLDS  111 (249)
T ss_pred             HHHHHCCCCEEEEEEC
Confidence            322 257899999996

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=99.36  E-value=2.9e-11  Score=72.92  Aligned_cols=83  Identities=16%  Similarity=0.103  Sum_probs=52.3

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHHHHhhCCCCCCccccCCCHHHHHHHHH---
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIGEDYQLKKSILR---   79 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~~l~---   79 (93)
                      +.+.|+|++|+||||+++.+++.  ....--...|+ .....+..+++..++..++.+...     .+...+...+.   
T Consensus        44 ~~~~l~G~~G~GKTtl~~~l~~~--l~~~~~~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~-----~~~~~~~~~l~~~l  115 (269)
T TIGR03015        44 GFILITGEVGAGKTTLIRNLLKR--LDQERVVAAKL-VNTRVDAEDLLRMVAADFGLETEG-----RDKAALLRELEDFL  115 (269)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHh--cCCCCeEEeee-eCCCCCHHHHHHHHHHHcCCCCCC-----CCHHHHHHHHHHHH
Confidence            47899999999999999999984  32110112232 233456778888898887654221     22333333333   


Q ss_pred             -Hhc-CCCeEEEEeeC
Q 037564           80 -DYL-TNKKYFIVLDD   93 (93)
Q Consensus        80 -~~L-~~kr~LlVlDD   93 (93)
                       ... .++++++|+||
T Consensus       116 ~~~~~~~~~~vliiDe  131 (269)
T TIGR03015       116 IEQFAAGKRALLVVDE  131 (269)
T ss_pred             HHHHhCCCCeEEEEEC
Confidence             322 67788999997

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=99.34  E-value=2.7e-11  Score=76.58  Aligned_cols=87  Identities=14%  Similarity=0.196  Sum_probs=62.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCC--CeeEEEEeCCCCCHHHHHHHHHHhhCCCCCCccccCCCHHHHHHHHHH
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYF--DCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIGEDYQLKKSILRD   80 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f--~~~~wv~~~~~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~~l~~   80 (93)
                      +.+.|+|++|+|||++++.+++  +.....  -..+++++....+...++..+++++.......  ...+.+++.+.+.+
T Consensus        56 ~~~lI~G~~GtGKT~l~~~v~~--~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~~~~~~  131 (394)
T PRK00411         56 LNVLIYGPPGTGKTTTVKKVFE--ELEEIAVKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPS--SGLSFDELFDKIAE  131 (394)
T ss_pred             CeEEEECCCCCCHHHHHHHHHH--HHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCC--CCCCHHHHHHHHHH
Confidence            4578999999999999999998  443322  23556666677788889999999987422111  01466777788888


Q ss_pred             hcC--CCeEEEEeeC
Q 037564           81 YLT--NKKYFIVLDD   93 (93)
Q Consensus        81 ~L~--~kr~LlVlDD   93 (93)
                      .+.  ++..+||||+
T Consensus       132 ~l~~~~~~~viviDE  146 (394)
T PRK00411        132 YLDERDRVLIVALDD  146 (394)
T ss_pred             HHHhcCCEEEEEECC
Confidence            774  3568889996

>PRK09376 rho transcription termination factor Rho; Provisional

Probab=99.31  E-value=4.6e-12  Score=79.80  Aligned_cols=90  Identities=12%  Similarity=0.024  Sum_probs=56.3

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCC--CHHHHHHHHHHhhCCCCCCcc-ccC-CCHHHHHHHH
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISY--DFRMVLDDIIKSVMPPSRVSV-IIG-EDYQLKKSIL   78 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~ll~~il~~l~~~~~~~~-~~~-~~~~~l~~~l   78 (93)
                      .-..|+|++|+||||||+.++++.... +|+..+|+.+.+.+  ...++++++...+-....... ... .........-
T Consensus       170 QR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~A  248 (416)
T PRK09376        170 QRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKA  248 (416)
T ss_pred             ceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHH
Confidence            356899999999999999999953333 79999999988776  677788777632221111110 000 1111111222


Q ss_pred             HHh-cCCCeEEEEeeC
Q 037564           79 RDY-LTNKKYFIVLDD   93 (93)
Q Consensus        79 ~~~-L~~kr~LlVlDD   93 (93)
                      +.. ..+++++|++|+
T Consensus       249 e~~~e~G~dVlL~iDs  264 (416)
T PRK09376        249 KRLVEHGKDVVILLDS  264 (416)
T ss_pred             HHHHHcCCCEEEEEEC
Confidence            222 267999999996

>TIGR02928 orc1/cdc6 family replication initiation protein

Probab=99.31  E-value=4.5e-11  Score=74.90  Aligned_cols=86  Identities=19%  Similarity=0.113  Sum_probs=59.3

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCC------CeeEEEEeCCCCCHHHHHHHHHHhhCC---CCCCccccCCCHHH
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYF------DCHAWVRVSISYDFRMVLDDIIKSVMP---PSRVSVIIGEDYQL   73 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f------~~~~wv~~~~~~~~~~ll~~il~~l~~---~~~~~~~~~~~~~~   73 (93)
                      +.+.|+|++|+|||++++.+++  ++....      -..+|+++....+...++..+++++..   ..+..   ..+..+
T Consensus        41 ~~i~I~G~~GtGKT~l~~~~~~--~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~---~~~~~~  115 (365)
T TIGR02928        41 SNVFIYGKTGTGKTAVTKYVMK--ELEEAAEDRDVRVVTVYVNCQILDTLYQVLVELANQLRGSGEEVPTT---GLSTSE  115 (365)
T ss_pred             CcEEEECCCCCCHHHHHHHHHH--HHHHHhhccCCceEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCCCC---CCCHHH
Confidence            5688999999999999999998  332211      134677777777788899999998842   11111   034556


Q ss_pred             HHHHHHHhcC--CCeEEEEeeC
Q 037564           74 KKSILRDYLT--NKKYFIVLDD   93 (93)
Q Consensus        74 l~~~l~~~L~--~kr~LlVlDD   93 (93)
                      +...+.+.+.  +++++||||+
T Consensus       116 ~~~~l~~~l~~~~~~~vlvIDE  137 (365)
T TIGR02928       116 VFRRLYKELNERGDSLIIVLDE  137 (365)
T ss_pred             HHHHHHHHHHhcCCeEEEEECc
Confidence            6666666663  5678899996

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.

>TIGR00767 rho transcription termination factor Rho

Probab=99.24  E-value=5.4e-11  Score=75.23  Aligned_cols=90  Identities=10%  Similarity=-0.036  Sum_probs=57.8

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCC--CCHHHHHHHHHHhhCCCCCCccc-cC-CCHHHHHHHH
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSIS--YDFRMVLDDIIKSVMPPSRVSVI-IG-EDYQLKKSIL   78 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~ll~~il~~l~~~~~~~~~-~~-~~~~~l~~~l   78 (93)
                      ..++|+|++|+|||||++.+++.... .+|+..+|+.+.+.  .+..++++.++..+-........ .. .-.....+..
T Consensus       169 q~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~A  247 (415)
T TIGR00767       169 QRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEKA  247 (415)
T ss_pred             CEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHHH
Confidence            46889999999999999999994322 26998899988755  78899999986544322211110 00 0111222222


Q ss_pred             HHh-cCCCeEEEEeeC
Q 037564           79 RDY-LTNKKYFIVLDD   93 (93)
Q Consensus        79 ~~~-L~~kr~LlVlDD   93 (93)
                      ... -++++++|++|+
T Consensus       248 e~~~~~GkdVVLlIDE  263 (415)
T TIGR00767       248 KRLVEHKKDVVILLDS  263 (415)
T ss_pred             HHHHHcCCCeEEEEEC
Confidence            222 267899999995

Members of this family differ in the specificity of RNA binding.

>PF05729 NACHT: NACHT domain

Probab=99.16  E-value=2.4e-10  Score=64.14  Aligned_cols=81  Identities=14%  Similarity=0.111  Sum_probs=45.7

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccC----CCeeEEEEeCCCCCHH---HHHHHHHHhhCCCCCCccccCCCHHHHH
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFY----FDCHAWVRVSISYDFR---MVLDDIIKSVMPPSRVSVIIGEDYQLKK   75 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~----f~~~~wv~~~~~~~~~---~ll~~il~~l~~~~~~~~~~~~~~~~l~   75 (93)
                      |++.|.|.+|+||||+++.++........    +...+|++........   .+...+..+.....       .....  
T Consensus         1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-------~~~~~--   71 (166)
T PF05729_consen    1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI-------APIEE--   71 (166)
T ss_pred             CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch-------hhhHH--
Confidence            68999999999999999998874222222    3345566554433222   33333333333111       11112  


Q ss_pred             HHHHHhc-CCCeEEEEeeC
Q 037564           76 SILRDYL-TNKKYFIVLDD   93 (93)
Q Consensus        76 ~~l~~~L-~~kr~LlVlDD   93 (93)
                       .+...+ ..+++++|+|+
T Consensus        72 -~~~~~~~~~~~~llilDg   89 (166)
T PF05729_consen   72 -LLQELLEKNKRVLLILDG   89 (166)
T ss_pred             -HHHHHHHcCCceEEEEec
Confidence             222222 56899999995

>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]

Probab=99.06  E-value=2.7e-09  Score=67.30  Aligned_cols=83  Identities=16%  Similarity=0.082  Sum_probs=65.0

Q ss_pred             eeEEcCCCCcHHHHHHHHhcCcccccCCC-e-eEEEEeCCCCCHHHHHHHHHHhhCCCCCCccccCCCHHHHHHHHHHhc
Q 037564            5 KPILDSSSFDKTAFTADTYNNNHVKFYFD-C-HAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYL   82 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~~~~~~~~f~-~-~~wv~~~~~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~L   82 (93)
                      +.|.|.+|+|||+.++.+.+  ++.+... . .+++++....+..+++..|++++... +...   .+..+....+.+.+
T Consensus        45 ~~iyG~~GTGKT~~~~~v~~--~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~-p~~g---~~~~~~~~~l~~~~  118 (366)
T COG1474          45 IIIYGPTGTGKTATVKFVME--ELEESSANVEVVYINCLELRTPYQVLSKILNKLGKV-PLTG---DSSLEILKRLYDNL  118 (366)
T ss_pred             EEEECCCCCCHhHHHHHHHH--HHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCC-CCCC---CchHHHHHHHHHHH
Confidence            78899999999999999999  5554422 1 68899999999999999999998622 2111   67777788888887


Q ss_pred             C--CCeEEEEeeC
Q 037564           83 T--NKKYFIVLDD   93 (93)
Q Consensus        83 ~--~kr~LlVlDD   93 (93)
                      .  ++.+++|||+
T Consensus       119 ~~~~~~~IvvLDE  131 (366)
T COG1474         119 SKKGKTVIVILDE  131 (366)
T ss_pred             HhcCCeEEEEEcc
Confidence            4  4778888996

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.95  E-value=1.2e-08  Score=70.13  Aligned_cols=86  Identities=10%  Similarity=0.080  Sum_probs=55.3

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCC-CCCHHHHHHHHHHhhCCCCCCc---c-----ccC-CCH
Q 037564            2 SGCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSI-SYDFRMVLDDIIKSVMPPSRVS---V-----IIG-EDY   71 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~ll~~il~~l~~~~~~~---~-----~~~-~~~   71 (93)
                      .+++.|.|++|.||||++.++.+  .    +..+.|+++.. +.++..+...++..+.......   .     ... .+.
T Consensus        32 ~~~~~v~apaG~GKTtl~~~~~~--~----~~~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  105 (903)
T PRK04841         32 YRLVLVTSPAGYGKTTLISQWAA--G----KNNLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASL  105 (903)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH--h----CCCeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCH
Confidence            46899999999999999999886  2    23688999964 4566677777777664211110   0     001 223


Q ss_pred             HHHHHHHHHhcC--CCeEEEEeeC
Q 037564           72 QLKKSILRDYLT--NKKYFIVLDD   93 (93)
Q Consensus        72 ~~l~~~l~~~L~--~kr~LlVlDD   93 (93)
                      ..+...+...+.  +.+++||+||
T Consensus       106 ~~~~~~~~~~l~~~~~~~~lvlDD  129 (903)
T PRK04841        106 SSLFAQLFIELADWHQPLYLVIDD  129 (903)
T ss_pred             HHHHHHHHHHHhcCCCCEEEEEeC
Confidence            334444444442  5789999998

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=98.90  E-value=1.2e-08  Score=55.15  Aligned_cols=23  Identities=13%  Similarity=0.066  Sum_probs=21.2

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+.+.|.|++|+||||+++.++.
T Consensus         2 ~~~~~l~G~~G~GKTtl~~~l~~   24 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALAR   24 (148)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHh
Confidence            46789999999999999999998

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PF13173 AAA_14: AAA domain

Probab=98.89  E-value=5.6e-09  Score=56.91  Aligned_cols=41  Identities=5%  Similarity=-0.059  Sum_probs=29.6

Q ss_pred             CCceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCC
Q 037564            1 FSGCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISY   44 (93)
Q Consensus         1 ~~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~   44 (93)
                      +.+++.|.|+.|+|||||+++++.+  .. .-...+|+++....
T Consensus         1 n~~~~~l~G~R~vGKTtll~~~~~~--~~-~~~~~~yi~~~~~~   41 (128)
T PF13173_consen    1 NRKIIILTGPRGVGKTTLLKQLAKD--LL-PPENILYINFDDPR   41 (128)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHH--hc-ccccceeeccCCHH
Confidence            3578999999999999999999873  22 22345666665443

>PTZ00202 tuzin; Provisional

Probab=98.88  E-value=5.2e-08  Score=62.88  Aligned_cols=76  Identities=11%  Similarity=0.040  Sum_probs=50.6

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHHHHhhCCCCCCccccCCCHHHHHHHHHHh
Q 037564            2 SGCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDY   81 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~   81 (93)
                      ++++.|.|++|+|||||++.+..  ...  +  ..++.-  ..+..++++.++.+|+.+..      ....++.+.|.+.
T Consensus       286 privvLtG~~G~GKTTLlR~~~~--~l~--~--~qL~vN--prg~eElLr~LL~ALGV~p~------~~k~dLLrqIqea  351 (550)
T PTZ00202        286 PRIVVFTGFRGCGKSSLCRSAVR--KEG--M--PAVFVD--VRGTEDTLRSVVKALGVPNV------EACGDLLDFISEA  351 (550)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHh--cCC--c--eEEEEC--CCCHHHHHHHHHHHcCCCCc------ccHHHHHHHHHHH
Confidence            35889999999999999999987  332  1  122222  22779999999999995322      3334555555555


Q ss_pred             c-----C-CCeEEEEe
Q 037564           82 L-----T-NKKYFIVL   91 (93)
Q Consensus        82 L-----~-~kr~LlVl   91 (93)
                      |     . +++.+||+
T Consensus       352 Ll~~~~e~GrtPVLII  367 (550)
T PTZ00202        352 CRRAKKMNGETPLLVL  367 (550)
T ss_pred             HHHHHHhCCCCEEEEE
Confidence            4     2 56666665

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=98.87  E-value=2.9e-08  Score=54.16  Aligned_cols=40  Identities=10%  Similarity=-0.086  Sum_probs=28.0

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCC
Q 037564            2 SGCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSIS   43 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~   43 (93)
                      .+.+.|+|++|+|||++++.+++  .....-...+++...+.
T Consensus        19 ~~~v~i~G~~G~GKT~l~~~i~~--~~~~~~~~v~~~~~~~~   58 (151)
T cd00009          19 PKNLLLYGPPGTGKTTLARAIAN--ELFRPGAPFLYLNASDL   58 (151)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH--HhhcCCCCeEEEehhhh
Confidence            35788999999999999999998  33222233455555443

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK08118 topology modulation protein; Reviewed

Probab=98.86  E-value=1.1e-09  Score=62.34  Aligned_cols=34  Identities=12%  Similarity=0.185  Sum_probs=26.4

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcCcccc-cCCCeeEE
Q 037564            4 CKPILDSSSFDKTAFTADTYNNNHVK-FYFDCHAW   37 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~~~~~-~~f~~~~w   37 (93)
                      -|.|+|++|+||||||+.+++...+. -+|+...|
T Consensus         3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~   37 (167)
T PRK08118          3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW   37 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence            47899999999999999999854433 34666664

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=98.84  E-value=1.1e-08  Score=58.44  Aligned_cols=28  Identities=11%  Similarity=-0.013  Sum_probs=19.6

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhcCcccccC
Q 037564            2 SGCKPILDSSSFDKTAFTADTYNNNHVKFY   31 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~   31 (93)
                      ++.+.|+|++|+|||+|.+.++.  .....
T Consensus        24 ~~~~ll~G~~G~GKT~ll~~~~~--~~~~~   51 (185)
T PF13191_consen   24 PRNLLLTGESGSGKTSLLRALLD--RLAER   51 (185)
T ss_dssp             ---EEE-B-TTSSHHHHHHHHHH--HHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH--HHHhc
Confidence            46789999999999999999988  44444

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=98.84  E-value=1.1e-08  Score=61.16  Aligned_cols=34  Identities=18%  Similarity=0.147  Sum_probs=27.8

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEE
Q 037564            4 CKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVR   39 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~   39 (93)
                      -++|.|.+|+|||||...++.  .....|.+..+++
T Consensus        15 r~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t   48 (241)
T PF04665_consen   15 RMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLIT   48 (241)
T ss_pred             eEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEe
Confidence            468999999999999999998  6777886655543

This is thought to be an ATPase involved in viral DNA packaging [].

>PRK12608 transcription termination factor Rho; Provisional

Probab=98.83  E-value=3.3e-08  Score=62.41  Aligned_cols=88  Identities=11%  Similarity=-0.042  Sum_probs=54.1

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcCcccccCC-Ce-eEEEEeCC-CCCHHHHHHHHHHhhCCCCCCccccC-CCHHHHHHHHH
Q 037564            4 CKPILDSSSFDKTAFTADTYNNNHVKFYF-DC-HAWVRVSI-SYDFRMVLDDIIKSVMPPSRVSVIIG-EDYQLKKSILR   79 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~~~~~~~f-~~-~~wv~~~~-~~~~~~ll~~il~~l~~~~~~~~~~~-~~~~~l~~~l~   79 (93)
                      -+.|.|.+|+|||||++.+++  .+.... +. ++|+.+.+ ..+..++++.+...+..+........ ...-.....+-
T Consensus       135 R~LIvG~pGtGKTTLl~~la~--~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~~~~~v~~~~~~~A  212 (380)
T PRK12608        135 RGLIVAPPRAGKTVLLQQIAA--AVAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPDEHIRVAELVLERA  212 (380)
T ss_pred             eEEEECCCCCCHHHHHHHHHH--HHHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHHHHHHHHHHHHHHH
Confidence            468999999999999999888  443322 33 46666654 56778899988876654322111000 11111222233


Q ss_pred             Hhc--CCCeEEEEeeC
Q 037564           80 DYL--TNKKYFIVLDD   93 (93)
Q Consensus        80 ~~L--~~kr~LlVlDD   93 (93)
                      +++  ++++++||+|+
T Consensus       213 e~f~~~GkdVVLvlDs  228 (380)
T PRK12608        213 KRLVEQGKDVVILLDS  228 (380)
T ss_pred             HHHHHcCCCEEEEEeC
Confidence            333  57899999996

>PRK07261 topology modulation protein; Provisional

Probab=98.79  E-value=3.6e-08  Score=56.28  Aligned_cols=54  Identities=13%  Similarity=0.059  Sum_probs=32.0

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcCcccc-cCCCeeEEEEeCCCCCHHHHHHHHHHhh
Q 037564            4 CKPILDSSSFDKTAFTADTYNNNHVK-FYFDCHAWVRVSISYDFRMVLDDIIKSV   57 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~~~~~-~~f~~~~wv~~~~~~~~~~ll~~il~~l   57 (93)
                      -|.|+|++|+||||||+.+.....+. -+.+...|-.-....+..++...+.+.+
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~   56 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNWQERDDDDMIADISNFL   56 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccccccCCHHHHHHHHHHHH
Confidence            48899999999999999987632221 1344455533223334444444444433

>PRK09361 radB DNA repair and recombination protein RadB; Provisional

Probab=98.78  E-value=3.8e-08  Score=58.22  Aligned_cols=43  Identities=7%  Similarity=-0.089  Sum_probs=32.4

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHH
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRM   48 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~   48 (93)
                      .++.|+|.+|+|||++|.+++.  .....-..++|++.. ..+...
T Consensus        24 ~i~~i~G~~GsGKT~l~~~la~--~~~~~~~~v~yi~~e-~~~~~r   66 (225)
T PRK09361         24 TITQIYGPPGSGKTNICLQLAV--EAAKNGKKVIYIDTE-GLSPER   66 (225)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEECC-CCCHHH
Confidence            5789999999999999999887  333344567888877 455443

>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional

Probab=98.77  E-value=1.7e-08  Score=64.98  Aligned_cols=49  Identities=10%  Similarity=-0.060  Sum_probs=37.8

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHH
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLD   51 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~   51 (93)
                      +-+.+.|++|+|||++|+.+++.......+....|+.+.+.++...++.
T Consensus       195 ~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~  243 (459)
T PRK11331        195 KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQ  243 (459)
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhc
Confidence            4578899999999999999988433334677778999988887666543

>PTZ00112 origin recognition complex 1 protein; Provisional

Probab=98.76  E-value=1.2e-07  Score=65.48  Aligned_cols=86  Identities=9%  Similarity=-0.046  Sum_probs=55.9

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCccccc-----CCC--eeEEEEeCCCCCHHHHHHHHHHhhCCCCCCccccCCCHHHHH
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKF-----YFD--CHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIGEDYQLKK   75 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~-----~f~--~~~wv~~~~~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~l~   75 (93)
                      .++.|.|++|+|||+.++.+..  ++.+     ...  ..+++++........+...|.+++....+...   .+.....
T Consensus       782 nvLYIyG~PGTGKTATVK~VLr--ELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~G---lsS~evL  856 (1164)
T PTZ00112        782 QILYISGMPGTGKTATVYSVIQ--LLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNA---LNSFKIL  856 (1164)
T ss_pred             ceEEEECCCCCCHHHHHHHHHH--HHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCCcc---ccHHHHH
Confidence            4567999999999999999987  3321     112  24567766667788888888888854332211   3444555


Q ss_pred             HHHHHhcC--CC-eEEEEeeC
Q 037564           76 SILRDYLT--NK-KYFIVLDD   93 (93)
Q Consensus        76 ~~l~~~L~--~k-r~LlVlDD   93 (93)
                      ..+...+.  .+ ..+||||+
T Consensus       857 erLF~~L~k~~r~v~IIILDE  877 (1164)
T PTZ00112        857 DRLFNQNKKDNRNVSILIIDE  877 (1164)
T ss_pred             HHHHhhhhcccccceEEEeeh
Confidence            55555542  22 35888996

>PRK08116 hypothetical protein; Validated

Probab=98.76  E-value=6.9e-08  Score=58.75  Aligned_cols=34  Identities=18%  Similarity=-0.105  Sum_probs=25.5

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEE
Q 037564            4 CKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVR   39 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~   39 (93)
                      -+.++|.+|+|||.||..+++  .+...-...+|++
T Consensus       116 gl~l~G~~GtGKThLa~aia~--~l~~~~~~v~~~~  149 (268)
T PRK08116        116 GLLLWGSVGTGKTYLAACIAN--ELIEKGVPVIFVN  149 (268)
T ss_pred             eEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEE
Confidence            378999999999999999999  5544333445554

>TIGR02237 recomb_radB DNA repair and recombination protein RadB

Probab=98.75  E-value=9.3e-08  Score=55.95  Aligned_cols=47  Identities=6%  Similarity=-0.139  Sum_probs=34.7

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHH
Q 037564            2 SGCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLD   51 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~   51 (93)
                      .+++.|+|++|+|||+++.+++.  .....-..++|++... ++...+.+
T Consensus        12 g~i~~i~G~~GsGKT~l~~~~~~--~~~~~g~~v~yi~~e~-~~~~rl~~   58 (209)
T TIGR02237        12 GTITQIYGPPGSGKTNICMILAV--NAARQGKKVVYIDTEG-LSPERFKQ   58 (209)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH--HHHhCCCeEEEEECCC-CCHHHHHH
Confidence            35789999999999999999887  3333446788988865 55555443

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=98.74  E-value=1.3e-08  Score=55.19  Aligned_cols=20  Identities=10%  Similarity=0.018  Sum_probs=18.8

Q ss_pred             eeEEcCCCCcHHHHHHHHhc
Q 037564            5 KPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~   24 (93)
                      |.++|++|+|||++|+.+++
T Consensus         1 ill~G~~G~GKT~l~~~la~   20 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQ   20 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHH
T ss_pred             CEEECcCCCCeeHHHHHHHh
Confidence            57899999999999999999

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.72  E-value=9.3e-08  Score=55.77  Aligned_cols=55  Identities=11%  Similarity=-0.014  Sum_probs=33.4

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCC-CHHHHHHHHHHhhC
Q 037564            2 SGCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISY-DFRMVLDDIIKSVM   58 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~ll~~il~~l~   58 (93)
                      +++|.++|+.|+||||.+.+++.  .....-..+..++..... ...+-++..++.++
T Consensus         1 p~vi~lvGptGvGKTTt~aKLAa--~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~   56 (196)
T PF00448_consen    1 PKVIALVGPTGVGKTTTIAKLAA--RLKLKGKKVALISADTYRIGAVEQLKTYAEILG   56 (196)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHH--HHHHTT--EEEEEESTSSTHHHHHHHHHHHHHT
T ss_pred             CEEEEEECCCCCchHhHHHHHHH--HHhhccccceeecCCCCCccHHHHHHHHHHHhc
Confidence            46899999999999998888777  333222233445544322 33444555555555

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B

Probab=98.71  E-value=1.2e-07  Score=56.37  Aligned_cols=91  Identities=8%  Similarity=0.033  Sum_probs=51.3

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhcCcccccC----CCeeEEEEeCCCCCHHHHHHHHHHhhCCCCCC---cc-ccC-CCH-
Q 037564            2 SGCKPILDSSSFDKTAFTADTYNNNHVKFY----FDCHAWVRVSISYDFRMVLDDIIKSVMPPSRV---SV-IIG-EDY-   71 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~----f~~~~wv~~~~~~~~~~ll~~il~~l~~~~~~---~~-~~~-~~~-   71 (93)
                      ..++.|.|.+|+|||+||.+++........    -..++|++....++...+ .++++........   .. -.. .+. 
T Consensus        19 g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl-~~~~~~~~~~~~~~~~~i~~~~~~~~~   97 (235)
T cd01123          19 GSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL-VQIAERFGLDPEEVLDNIYVARAYNSD   97 (235)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH-HHHHHHhccChHhHhcCEEEEecCCHH
Confidence            357899999999999999998753122211    256789888776665443 3333333211100   00 001 222 


Q ss_pred             --HHHHHHHHHhcC-C-CeEEEEeeC
Q 037564           72 --QLKKSILRDYLT-N-KKYFIVLDD   93 (93)
Q Consensus        72 --~~l~~~l~~~L~-~-kr~LlVlDD   93 (93)
                        ......+.+.+. . +--++|+|.
T Consensus        98 ~l~~~l~~l~~~l~~~~~~~liVIDS  123 (235)
T cd01123          98 HQLQLLEELEAILIESSRIKLVIVDS  123 (235)
T ss_pred             HHHHHHHHHHHHHhhcCCeeEEEEeC
Confidence              334455555553 3 556899983

This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .

>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP

Probab=98.71  E-value=2.3e-08  Score=58.79  Aligned_cols=23  Identities=17%  Similarity=0.104  Sum_probs=21.2

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ++.+.|+|+.|+|||+|++.+.+
T Consensus        20 ~~~~~l~G~rg~GKTsLl~~~~~   42 (234)
T PF01637_consen   20 SQHILLYGPRGSGKTSLLKEFIN   42 (234)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEEcCCcCCHHHHHHHHHH
Confidence            46889999999999999999988

; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=98.69  E-value=1.5e-08  Score=54.43  Aligned_cols=21  Identities=10%  Similarity=0.056  Sum_probs=19.9

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +|.|.|++|+||||+|+.+.+
T Consensus         1 vI~I~G~~gsGKST~a~~La~   21 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAE   21 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999988

...

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=98.67  E-value=4.5e-07  Score=55.77  Aligned_cols=86  Identities=14%  Similarity=0.059  Sum_probs=59.1

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC-ccccc---CCCeeEEEEeCCCCCHHHHHHHHHHhhCCCCCCccccCCCHHHHHHHHH
Q 037564            4 CKPILDSSSFDKTAFTADTYNN-NHVKF---YFDCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIGEDYQLKKSILR   79 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~-~~~~~---~f~~~~wv~~~~~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~~l~   79 (93)
                      .+.|+|.++.|||++++++... +...+   .--+++.+.+...++...+...|++.++.+....    .+...+.....
T Consensus        63 ~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~----~~~~~~~~~~~  138 (302)
T PF05621_consen   63 NLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPR----DRVAKLEQQVL  138 (302)
T ss_pred             ceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCC----CCHHHHHHHHH
Confidence            5789999999999999998863 11111   1124667788888999999999999999765432    44555555555


Q ss_pred             HhcCC-CeEEEEeeC
Q 037564           80 DYLTN-KKYFIVLDD   93 (93)
Q Consensus        80 ~~L~~-kr~LlVlDD   93 (93)
                      ..|+. +-=+||+|+
T Consensus       139 ~llr~~~vrmLIIDE  153 (302)
T PF05621_consen  139 RLLRRLGVRMLIIDE  153 (302)
T ss_pred             HHHHHcCCcEEEeec
Confidence            56643 223777774

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=98.66  E-value=7.1e-08  Score=59.91  Aligned_cols=25  Identities=8%  Similarity=-0.041  Sum_probs=22.6

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhcCc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYNNN   26 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~~~   26 (93)
                      .|+|.++|++|.|||+|++.+++..
T Consensus       177 NRliLlhGPPGTGKTSLCKaLaQkL  201 (423)
T KOG0744|consen  177 NRLILLHGPPGTGKTSLCKALAQKL  201 (423)
T ss_pred             eeEEEEeCCCCCChhHHHHHHHHhh
Confidence            4789999999999999999999953

>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]

Probab=98.63  E-value=2.5e-07  Score=58.43  Aligned_cols=86  Identities=16%  Similarity=0.259  Sum_probs=59.3

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHHHHhhC-CCCCCcc-ccC-CCHHHHHHHHH
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSVM-PPSRVSV-IIG-EDYQLKKSILR   79 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~il~~l~-~~~~~~~-~~~-~~~~~l~~~l~   79 (93)
                      ..|-|.|-+|.|||.+.+++++..  .   ....|+++-..++...+++.|+.+.. .+..... +.. .+..+.+..+.
T Consensus        31 S~~~iyG~sgTGKT~~~r~~l~~~--n---~~~vw~n~~ecft~~~lle~IL~~~~~~d~dg~~~~~~~en~~d~i~~l~  105 (438)
T KOG2543|consen   31 SIVHIYGHSGTGKTYLVRQLLRKL--N---LENVWLNCVECFTYAILLEKILNKSQLADKDGDKVEGDAENFSDFIYLLV  105 (438)
T ss_pred             eeEEEeccCCCchhHHHHHHHhhc--C---CcceeeehHHhccHHHHHHHHHHHhccCCCchhhhhhHHHHHHHHHHHHH
Confidence            356789999999999999999943  2   23589999999999999999999985 2221111 111 23334444444


Q ss_pred             Hh--cC--CCeEEEEeeC
Q 037564           80 DY--LT--NKKYFIVLDD   93 (93)
Q Consensus        80 ~~--L~--~kr~LlVlDD   93 (93)
                      .+  .+  ++.++||||+
T Consensus       106 q~~~~t~~d~~~~liLDn  123 (438)
T KOG2543|consen  106 QWPAATNRDQKVFLILDN  123 (438)
T ss_pred             hhHHhhccCceEEEEEcC
Confidence            42  22  4589999996

>TIGR02012 tigrfam_recA protein RecA

Probab=98.63  E-value=1.5e-07  Score=58.52  Aligned_cols=83  Identities=12%  Similarity=0.039  Sum_probs=49.7

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHHHHhhCCCCCCccccC-CCHHHHHHHHHHh
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIG-EDYQLKKSILRDY   81 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~il~~l~~~~~~~~~~~-~~~~~l~~~l~~~   81 (93)
                      +++-|.|++|+||||||.+++.  .....-..++|+...+.++..     .+++++.....-.-.+ .+.++....+...
T Consensus        56 ~iteI~G~~GsGKTtLaL~~~~--~~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~~l  128 (321)
T TIGR02012        56 RIIEIYGPESSGKTTLALHAIA--EAQKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAETL  128 (321)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHHH
Confidence            5788999999999999998877  333334556788766655542     2344432211110111 4555566666555


Q ss_pred             cCC-CeEEEEee
Q 037564           82 LTN-KKYFIVLD   92 (93)
Q Consensus        82 L~~-kr~LlVlD   92 (93)
                      ++. .--++|+|
T Consensus       129 i~~~~~~lIVID  140 (321)
T TIGR02012       129 VRSGAVDIIVVD  140 (321)
T ss_pred             hhccCCcEEEEc
Confidence            543 44578887

This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.

>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=98.62  E-value=1.6e-07  Score=58.47  Aligned_cols=83  Identities=14%  Similarity=0.051  Sum_probs=50.3

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHHHHhhCCCCCCccccC-CCHHHHHHHHHHh
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIG-EDYQLKKSILRDY   81 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~il~~l~~~~~~~~~~~-~~~~~l~~~l~~~   81 (93)
                      +++-|.|++|+||||||.+++.  .....-..++|+.....+++.     .+++++.....-.-.. .+.++....+...
T Consensus        56 ~iteI~Gp~GsGKTtLal~~~~--~~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~~l  128 (325)
T cd00983          56 RIIEIYGPESSGKTTLALHAIA--EAQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIADSL  128 (325)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH--HHHHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHHHH
Confidence            5788999999999999999876  333334567788776655542     2334432211100111 4556666666655


Q ss_pred             cCC-CeEEEEee
Q 037564           82 LTN-KKYFIVLD   92 (93)
Q Consensus        82 L~~-kr~LlVlD   92 (93)
                      ++. .--++|+|
T Consensus       129 i~s~~~~lIVID  140 (325)
T cd00983         129 VRSGAVDLIVVD  140 (325)
T ss_pred             HhccCCCEEEEc
Confidence            543 34578887

RecA couples ATP hydrolysis to DNA strand exchange.

>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain

Probab=98.62  E-value=1.7e-07  Score=57.06  Aligned_cols=89  Identities=12%  Similarity=0.187  Sum_probs=52.3

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCCC-eeEEEEeCCC-CCHHHHHHHHHHhhCCCCCCcc--ccCC-CHH-----
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFD-CHAWVRVSIS-YDFRMVLDDIIKSVMPPSRVSV--IIGE-DYQ-----   72 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~-~~~wv~~~~~-~~~~~ll~~il~~l~~~~~~~~--~~~~-~~~-----   72 (93)
                      .-++|.|.+|+|||||+..+++  .++.+|. .++++-+.+. ....++.+.+.+.-......-.  ..+. ...     
T Consensus        70 Qr~~If~~~G~GKTtLa~~i~~--~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~  147 (274)
T cd01133          70 GKIGLFGGAGVGKTVLIMELIN--NIAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVA  147 (274)
T ss_pred             CEEEEecCCCCChhHHHHHHHH--HHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence            4578999999999999999998  5554554 4455566554 3456666666543211100000  0001 111     


Q ss_pred             HHHHHHHHhc--C-CCeEEEEeeC
Q 037564           73 LKKSILRDYL--T-NKKYFIVLDD   93 (93)
Q Consensus        73 ~l~~~l~~~L--~-~kr~LlVlDD   93 (93)
                      ...-.+-+++  + ++.+|+++||
T Consensus       148 ~~a~~~AEyfr~~~g~~Vl~~~Ds  171 (274)
T cd01133         148 LTGLTMAEYFRDEEGQDVLLFIDN  171 (274)
T ss_pred             HHHHHHHHHHHHhcCCeEEEEEeC
Confidence            1223355555  3 8899999997

The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.

>cd01394 radB RadB

Probab=98.61  E-value=3.2e-07  Score=54.07  Aligned_cols=40  Identities=8%  Similarity=-0.105  Sum_probs=29.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISY   44 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~   44 (93)
                      .++.|.|.+|+||||+|.+++.  .....-..++|++....+
T Consensus        20 ~i~~i~G~~GsGKT~l~~~~a~--~~~~~g~~v~yi~~e~~~   59 (218)
T cd01394          20 TVTQVYGPPGTGKTNIAIQLAV--ETAGQGKKVAYIDTEGLS   59 (218)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH--HHHhcCCeEEEEECCCCC
Confidence            5788999999999999999887  433333456677655444

The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=98.61  E-value=1.7e-07  Score=59.44  Aligned_cols=26  Identities=12%  Similarity=0.031  Sum_probs=20.6

Q ss_pred             eeEEcCCCCcHHHHHHHHhcCcccccCC
Q 037564            5 KPILDSSSFDKTAFTADTYNNNHVKFYF   32 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~~~~~~~~f   32 (93)
                      .-+||++|+||||||+.+..  .....|
T Consensus        51 mIl~GPPG~GKTTlA~liA~--~~~~~f   76 (436)
T COG2256          51 MILWGPPGTGKTTLARLIAG--TTNAAF   76 (436)
T ss_pred             eEEECCCCCCHHHHHHHHHH--hhCCce
Confidence            35799999999999999988  444344

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=98.60  E-value=5.4e-07  Score=52.33  Aligned_cols=80  Identities=14%  Similarity=-0.033  Sum_probs=42.2

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcCcccccC-CCe---eEEEEeCCCCCHHHHHHHHHHhhCCCCCCccccC-CCHHHHHHHH
Q 037564            4 CKPILDSSSFDKTAFTADTYNNNHVKFY-FDC---HAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIG-EDYQLKKSIL   78 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~~~~~~~-f~~---~~wv~~~~~~~~~~ll~~il~~l~~~~~~~~~~~-~~~~~l~~~l   78 (93)
                      ||+|.|++|+||||+|+.+..  .+... ..+   ....+............. ..... ......... .+.+.+.+.+
T Consensus         1 IIgI~G~sgSGKTTla~~L~~--~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~-~~~~~~~p~a~d~~~l~~~l   76 (194)
T PF00485_consen    1 IIGIAGPSGSGKTTLAKRLAQ--ILNKRGIPAMEMDIILSLDDFYDDYHLRDR-KGRGE-NRYNFDHPDAFDFDLLKEDL   76 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH--HHTTCTTTCCCSEEEEEGGGGBHHHHHHHH-HHHCT-TTSSTTSGGGBSHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH--HhCccCcCccceeEEEeecccccccchhhH-hhccc-cccCCCCccccCHHHHHHHH
Confidence            699999999999999999987  44422 221   223333322222222222 11111 110000112 6777787777


Q ss_pred             HHhcCCCeE
Q 037564           79 RDYLTNKKY   87 (93)
Q Consensus        79 ~~~L~~kr~   87 (93)
                      ....+++.+
T Consensus        77 ~~L~~g~~i   85 (194)
T PF00485_consen   77 KALKNGGSI   85 (194)
T ss_dssp             HHHHTTSCE
T ss_pred             HHHhCCCcc
Confidence            776665543

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=98.60  E-value=7.9e-07  Score=60.77  Aligned_cols=89  Identities=19%  Similarity=0.135  Sum_probs=62.2

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCC-CCCHHHHHHHHHHhhCCCCCCcc--------ccC-CCH
Q 037564            2 SGCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSI-SYDFRMVLDDIIKSVMPPSRVSV--------IIG-EDY   71 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~ll~~il~~l~~~~~~~~--------~~~-~~~   71 (93)
                      .|.+.|..|.|.|||||+.+...  ... .-..+.|.++.. +.++..+++.++..+....+...        ... .+.
T Consensus        37 ~RL~li~APAGfGKttl~aq~~~--~~~-~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l  113 (894)
T COG2909          37 YRLILISAPAGFGKTTLLAQWRE--LAA-DGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEAQTLLQKHQYVSL  113 (894)
T ss_pred             ceEEEEeCCCCCcHHHHHHHHHH--hcC-cccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHHHHHHHHhcccccH
Confidence            47899999999999999999865  222 334578999875 45778899999988863222111        111 455


Q ss_pred             HHHHHHHHHhcC--CCeEEEEeeC
Q 037564           72 QLKKSILRDYLT--NKKYFIVLDD   93 (93)
Q Consensus        72 ~~l~~~l~~~L~--~kr~LlVlDD   93 (93)
                      ..+.+.+..-+.  ++++.+||||
T Consensus       114 ~~l~~~L~~Ela~~~~pl~LVlDD  137 (894)
T COG2909         114 ESLLSSLLNELASYEGPLYLVLDD  137 (894)
T ss_pred             HHHHHHHHHHHHhhcCceEEEecc
Confidence            566666666553  4688999998

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=98.60  E-value=9.8e-07  Score=49.14  Aligned_cols=40  Identities=8%  Similarity=0.009  Sum_probs=28.8

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCC
Q 037564            4 CKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYD   45 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~   45 (93)
                      ++.|.|++|+||||++..+..  .....-..+.|++......
T Consensus         1 ~~~i~G~~G~GKT~l~~~i~~--~~~~~~~~v~~~~~e~~~~   40 (165)
T cd01120           1 LILVFGPTGSGKTTLALQLAL--NIATKGGKVVYVDIEEEIE   40 (165)
T ss_pred             CeeEeCCCCCCHHHHHHHHHH--HHHhcCCEEEEEECCcchH
Confidence            468999999999999999988  3333334566776655443

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>PRK08233 hypothetical protein; Provisional

Probab=98.58  E-value=3.8e-07  Score=52.10  Aligned_cols=23  Identities=22%  Similarity=0.072  Sum_probs=21.2

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +.+|+|.|.+|+||||||+.+..
T Consensus         3 ~~iI~I~G~~GsGKtTla~~L~~   25 (182)
T PRK08233          3 TKIITIAAVSGGGKTTLTERLTH   25 (182)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHh
Confidence            46899999999999999999987

>PRK09354 recA recombinase A; Provisional

Probab=98.58  E-value=2.5e-07  Score=58.06  Aligned_cols=83  Identities=13%  Similarity=0.044  Sum_probs=51.1

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHHHHhhCCCCCCccccC-CCHHHHHHHHHHh
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIG-EDYQLKKSILRDY   81 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~il~~l~~~~~~~~~~~-~~~~~l~~~l~~~   81 (93)
                      +++-|.|++|+||||||-+++.  .....-..++|+.....++..     .+++++.....-.-.+ .+.++....+...
T Consensus        61 ~IteI~G~~GsGKTtLal~~~~--~~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~~~l  133 (349)
T PRK09354         61 RIVEIYGPESSGKTTLALHAIA--EAQKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIADTL  133 (349)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHHH
Confidence            5788999999999999999877  333344567888777666642     3344432211111111 4556666666665


Q ss_pred             cCC-CeEEEEee
Q 037564           82 LTN-KKYFIVLD   92 (93)
Q Consensus        82 L~~-kr~LlVlD   92 (93)
                      ++. .--++|+|
T Consensus       134 i~s~~~~lIVID  145 (349)
T PRK09354        134 VRSGAVDLIVVD  145 (349)
T ss_pred             hhcCCCCEEEEe
Confidence            543 44588888

>PRK05541 adenylylsulfate kinase; Provisional

Probab=98.57  E-value=2e-07  Score=53.27  Aligned_cols=34  Identities=15%  Similarity=0.153  Sum_probs=26.4

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEE
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWV   38 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv   38 (93)
                      .+|.+.|++|+||||+|+.++.  ++...+....++
T Consensus         8 ~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~   41 (176)
T PRK05541          8 YVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYL   41 (176)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEE
Confidence            4789999999999999999988  555444444444

>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]

Probab=98.56  E-value=3.6e-07  Score=57.89  Aligned_cols=49  Identities=12%  Similarity=0.067  Sum_probs=32.4

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHHHHh
Q 037564            4 CKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKS   56 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~il~~   56 (93)
                      -+.+||++|+||||||+.+....+-..    ..|+..+-......-.+.+.++
T Consensus       164 SmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~  212 (554)
T KOG2028|consen  164 SMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQ  212 (554)
T ss_pred             ceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHH
Confidence            356899999999999999998544333    3456666544444444555443

>PRK12377 putative replication protein; Provisional

Probab=98.56  E-value=5.6e-07  Score=54.27  Aligned_cols=35  Identities=14%  Similarity=-0.098  Sum_probs=26.4

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEe
Q 037564            4 CKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRV   40 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~   40 (93)
                      -+.++|.+|+|||.||..+++  .+......+.++++
T Consensus       103 ~l~l~G~~GtGKThLa~AIa~--~l~~~g~~v~~i~~  137 (248)
T PRK12377        103 NFVFSGKPGTGKNHLAAAIGN--RLLAKGRSVIVVTV  137 (248)
T ss_pred             eEEEECCCCCCHHHHHHHHHH--HHHHcCCCeEEEEH
Confidence            578999999999999999999  55444334456544

>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=98.56  E-value=1.5e-06  Score=51.42  Aligned_cols=88  Identities=7%  Similarity=0.029  Sum_probs=51.4

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCC------CeeEEEEeCCCCCHHHHHHHHHHhhCCCCC---Ccc-ccC-CCH
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYF------DCHAWVRVSISYDFRMVLDDIIKSVMPPSR---VSV-IIG-EDY   71 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f------~~~~wv~~~~~~~~~~ll~~il~~l~~~~~---~~~-~~~-~~~   71 (93)
                      .++.|.|++|+|||+||.+++..  ....-      ..++|+.....++...+ .++.+.......   ... -.. .+.
T Consensus        20 ~v~~I~G~~GsGKT~l~~~ia~~--~~~~~~~~g~~~~v~yi~~e~~~~~~rl-~~~~~~~~~~~~~~~~~i~~~~~~~~   96 (226)
T cd01393          20 RITEIFGEFGSGKTQLCLQLAVE--AQLPGELGGLEGKVVYIDTEGAFRPERL-VQLAVRFGLDPEEVLDNIYVARPYNG   96 (226)
T ss_pred             cEEEEeCCCCCChhHHHHHHHHH--hhcccccCCCcceEEEEecCCCCCHHHH-HHHHHHhccchhhhhccEEEEeCCCH
Confidence            58899999999999999998763  22222      45678887766665444 333333221100   001 111 455


Q ss_pred             HHHHHHHHHhcC---C-CeEEEEeeC
Q 037564           72 QLKKSILRDYLT---N-KKYFIVLDD   93 (93)
Q Consensus        72 ~~l~~~l~~~L~---~-kr~LlVlDD   93 (93)
                      +++...+.+...   . +--|+|+|.
T Consensus        97 ~~~~~~l~~~~~~~~~~~~~lvVIDs  122 (226)
T cd01393          97 EQQLEIVEELERIMSSGRVDLVVVDS  122 (226)
T ss_pred             HHHHHHHHHHHHHhhcCCeeEEEEcC
Confidence            666666655543   3 445888884

RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=98.55  E-value=5.3e-07  Score=53.50  Aligned_cols=26  Identities=15%  Similarity=0.169  Sum_probs=20.8

Q ss_pred             eeEEcCCCCcHHHHHHHHhcCcccccCC
Q 037564            5 KPILDSSSFDKTAFTADTYNNNHVKFYF   32 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~~~~~~~~f   32 (93)
                      +.+||++|+||||||..+.+  +....|
T Consensus        53 ~lf~GPPG~GKTTLA~IIA~--e~~~~~   78 (233)
T PF05496_consen   53 MLFYGPPGLGKTTLARIIAN--ELGVNF   78 (233)
T ss_dssp             EEEESSTTSSHHHHHHHHHH--HCT--E
T ss_pred             EEEECCCccchhHHHHHHHh--ccCCCe
Confidence            57899999999999999999  554444

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=98.54  E-value=3.2e-07  Score=54.10  Aligned_cols=22  Identities=18%  Similarity=0.016  Sum_probs=20.7

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+|+|.|.+|+||||+|+.+..
T Consensus         9 iiIgIaG~SgSGKTTva~~l~~   30 (218)
T COG0572           9 IIIGIAGGSGSGKTTVAKELSE   30 (218)
T ss_pred             EEEEEeCCCCCCHHHHHHHHHH
Confidence            4899999999999999999988

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=98.54  E-value=2.8e-07  Score=52.99  Aligned_cols=35  Identities=9%  Similarity=-0.078  Sum_probs=23.9

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEE
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVR   39 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~   39 (93)
                      .-+.++|++|+|||.||..+.+  +.-.+=..+.|+.
T Consensus        48 ~~l~l~G~~G~GKThLa~ai~~--~~~~~g~~v~f~~   82 (178)
T PF01695_consen   48 ENLILYGPPGTGKTHLAVAIAN--EAIRKGYSVLFIT   82 (178)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHH--HHHHTT--EEEEE
T ss_pred             eEEEEEhhHhHHHHHHHHHHHH--HhccCCcceeEee
Confidence            3478899999999999999987  3333222345554

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>PRK07952 DNA replication protein DnaC; Validated

Probab=98.52  E-value=7.9e-07  Score=53.50  Aligned_cols=34  Identities=9%  Similarity=-0.038  Sum_probs=24.8

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEE
Q 037564            4 CKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVR   39 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~   39 (93)
                      .+.++|.+|+|||+||..+++  .+...-..+++++
T Consensus       101 ~~~l~G~~GtGKThLa~aia~--~l~~~g~~v~~it  134 (244)
T PRK07952        101 SFIFSGKPGTGKNHLAAAICN--ELLLRGKSVLIIT  134 (244)
T ss_pred             eEEEECCCCCCHHHHHHHHHH--HHHhcCCeEEEEE
Confidence            578899999999999999998  4433333344543

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=98.51  E-value=5.7e-07  Score=58.21  Aligned_cols=26  Identities=19%  Similarity=-0.028  Sum_probs=21.9

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcCcccccC
Q 037564            4 CKPILDSSSFDKTAFTADTYNNNHVKFY   31 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~~~~~~~   31 (93)
                      -+.|+|++|+|||+|++.+++  .+...
T Consensus       132 ~l~lyG~~G~GKTHLl~ai~~--~l~~~  157 (440)
T PRK14088        132 PLFIYGGVGLGKTHLLQSIGN--YVVQN  157 (440)
T ss_pred             eEEEEcCCCCcHHHHHHHHHH--HHHHh
Confidence            478999999999999999998  55443

>PRK06762 hypothetical protein; Provisional

Probab=98.51  E-value=1e-07  Score=53.97  Aligned_cols=24  Identities=17%  Similarity=0.069  Sum_probs=22.1

Q ss_pred             CCceeeEEcCCCCcHHHHHHHHhc
Q 037564            1 FSGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         1 ~~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      |+.+|.|.|++|+||||+|+.+..
T Consensus         1 m~~li~i~G~~GsGKST~A~~L~~   24 (166)
T PRK06762          1 MTTLIIIRGNSGSGKTTIAKQLQE   24 (166)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999999999877

>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51

Probab=98.50  E-value=4.5e-07  Score=54.89  Aligned_cols=90  Identities=16%  Similarity=0.126  Sum_probs=51.7

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccC----CCeeEEEEeCCCCCHHHHHHHHHHhhCCCCCC---cc-ccC-CCHHH
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFY----FDCHAWVRVSISYDFRMVLDDIIKSVMPPSRV---SV-IIG-EDYQL   73 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~----f~~~~wv~~~~~~~~~~ll~~il~~l~~~~~~---~~-~~~-~~~~~   73 (93)
                      .+.=|+|++|+|||.|+-+++-...+...    =..++|++-...++...+ .+|++........   .+ -.. .+.++
T Consensus        39 ~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl-~~i~~~~~~~~~~~l~~I~v~~~~~~~~  117 (256)
T PF08423_consen   39 SITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERL-QQIAERFGLDPEEILDNIFVIRVFDLEE  117 (256)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHH-HHHHHHTTS-HHHHHHTEEEEE-SSHHH
T ss_pred             cEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHH-HHHhhccccccchhhhceeeeecCCHHH
Confidence            46779999999999999887653333322    235789988888887665 4566654322110   00 111 34444


Q ss_pred             HHHHH---HHhcC-CCeEEEEeeC
Q 037564           74 KKSIL---RDYLT-NKKYFIVLDD   93 (93)
Q Consensus        74 l~~~l---~~~L~-~kr~LlVlDD   93 (93)
                      +...+   ...+. ++--|||+|.
T Consensus       118 l~~~L~~l~~~l~~~~ikLIVIDS  141 (256)
T PF08423_consen  118 LLELLEQLPKLLSESKIKLIVIDS  141 (256)
T ss_dssp             HHHHHHHHHHHHHHSCEEEEEEET
T ss_pred             HHHHHHHHHhhccccceEEEEecc
Confidence            44443   33342 3444888984

It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=98.49  E-value=1.2e-06  Score=49.91  Aligned_cols=21  Identities=14%  Similarity=0.004  Sum_probs=19.1

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ++.+.|++|+||||++..+..
T Consensus         2 ~~~~~G~~G~GKTt~~~~la~   22 (173)
T cd03115           2 VILLVGLQGVGKTTTAAKLAL   22 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            678899999999999998877

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=98.48  E-value=2.3e-06  Score=52.52  Aligned_cols=84  Identities=18%  Similarity=0.146  Sum_probs=44.4

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCC-CHHHHHHHHHHhhCCCCCCccccCCCHHHHHHHHHHh
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISY-DFRMVLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDY   81 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~   81 (93)
                      ++++++|++|+||||++..+......+..-..+..++..... ...+.+....+.++.+... .   .+...+...+.. 
T Consensus       195 ~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~-~---~~~~~l~~~l~~-  269 (282)
T TIGR03499       195 GVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKV-A---RDPKELRKALDR-  269 (282)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceec-c---CCHHHHHHHHHH-
Confidence            589999999999999999988732212111233445543322 2233333434443322211 1   345555555544 


Q ss_pred             cCCCeEEEEee
Q 037564           82 LTNKKYFIVLD   92 (93)
Q Consensus        82 L~~kr~LlVlD   92 (93)
                      +.+.. ++++|
T Consensus       270 ~~~~d-~vliD  279 (282)
T TIGR03499       270 LRDKD-LILID  279 (282)
T ss_pred             ccCCC-EEEEe
Confidence            44443 66676

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=98.48  E-value=9.3e-07  Score=55.16  Aligned_cols=22  Identities=14%  Similarity=0.105  Sum_probs=20.1

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +.+.++|++|+|||+||+.+++
T Consensus        52 ~~~ll~GppG~GKT~la~~ia~   73 (328)
T PRK00080         52 DHVLLYGPPGLGKTTLANIIAN   73 (328)
T ss_pred             CcEEEECCCCccHHHHHHHHHH
Confidence            4578999999999999999998

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=98.47  E-value=8.4e-07  Score=54.64  Aligned_cols=21  Identities=14%  Similarity=0.094  Sum_probs=19.5

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+.++|++|+|||+||+.+++
T Consensus        32 ~~ll~Gp~G~GKT~la~~ia~   52 (305)
T TIGR00635        32 HLLLYGPPGLGKTTLAHIIAN   52 (305)
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999988

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]

Probab=98.46  E-value=1.4e-06  Score=52.77  Aligned_cols=34  Identities=12%  Similarity=-0.025  Sum_probs=24.9

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEE
Q 037564            4 CKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVR   39 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~   39 (93)
                      -+.+.|.+|+|||.||.++.+  ++...-..+.|++
T Consensus       107 nl~l~G~~G~GKThLa~Ai~~--~l~~~g~sv~f~~  140 (254)
T COG1484         107 NLVLLGPPGVGKTHLAIAIGN--ELLKAGISVLFIT  140 (254)
T ss_pred             cEEEECCCCCcHHHHHHHHHH--HHHHcCCeEEEEE
Confidence            367899999999999999999  5553323344544

>PRK08939 primosomal protein DnaI; Reviewed

Probab=98.46  E-value=1e-06  Score=54.58  Aligned_cols=35  Identities=9%  Similarity=-0.084  Sum_probs=25.1

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEe
Q 037564            4 CKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRV   40 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~   40 (93)
                      -+.++|..|+|||.||..+++  .+...-..+.|+++
T Consensus       158 gl~L~G~~G~GKThLa~Aia~--~l~~~g~~v~~~~~  192 (306)
T PRK08939        158 GLYLYGDFGVGKSYLLAAIAN--ELAKKGVSSTLLHF  192 (306)
T ss_pred             eEEEECCCCCCHHHHHHHHHH--HHHHcCCCEEEEEH
Confidence            467899999999999999999  44333223455543

>PTZ00301 uridine kinase; Provisional

Probab=98.45  E-value=2.7e-07  Score=54.37  Aligned_cols=22  Identities=14%  Similarity=0.146  Sum_probs=19.9

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      -+|+|.|.+|+||||||+.+..
T Consensus         4 ~iIgIaG~SgSGKTTla~~l~~   25 (210)
T PTZ00301          4 TVIGISGASGSGKSSLSTNIVS   25 (210)
T ss_pred             EEEEEECCCcCCHHHHHHHHHH
Confidence            4899999999999999998765

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=98.45  E-value=2.4e-06  Score=50.71  Aligned_cols=21  Identities=14%  Similarity=-0.037  Sum_probs=19.6

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +|+|.|.+|+||||+|+.+..
T Consensus         1 IigI~G~sGSGKTTla~~L~~   21 (220)
T cd02025           1 IIGIAGSVAVGKSTTARVLQA   21 (220)
T ss_pred             CEEeeCCCCCCHHHHHHHHHH
Confidence            589999999999999999887

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>TIGR03689 pup_AAA proteasome ATPase

Probab=98.45  E-value=6.5e-07  Score=58.76  Aligned_cols=22  Identities=14%  Similarity=0.052  Sum_probs=19.9

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +-+.++|++|+|||++|+.+++
T Consensus       217 ~GILLyGPPGTGKT~LAKAlA~  238 (512)
T TIGR03689       217 KGVLLYGPPGCGKTLIAKAVAN  238 (512)
T ss_pred             cceEEECCCCCcHHHHHHHHHH
Confidence            3478899999999999999998

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>PRK08181 transposase; Validated

Probab=98.44  E-value=1.3e-06  Score=53.23  Aligned_cols=34  Identities=9%  Similarity=-0.174  Sum_probs=24.4

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEE
Q 037564            4 CKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVR   39 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~   39 (93)
                      -+.++|++|+|||.||..+.+  +.......+.|++
T Consensus       108 nlll~Gp~GtGKTHLa~Aia~--~a~~~g~~v~f~~  141 (269)
T PRK08181        108 NLLLFGPPGGGKSHLAAAIGL--ALIENGWRVLFTR  141 (269)
T ss_pred             eEEEEecCCCcHHHHHHHHHH--HHHHcCCceeeee
Confidence            478999999999999999987  4333322344543

>PRK06921 hypothetical protein; Provisional

Probab=98.44  E-value=1.2e-06  Score=53.30  Aligned_cols=36  Identities=11%  Similarity=-0.030  Sum_probs=26.6

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccC-CCeeEEEEe
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFY-FDCHAWVRV   40 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~-f~~~~wv~~   40 (93)
                      .-+.++|.+|+|||.||..+++  .+... -..++|++.
T Consensus       118 ~~l~l~G~~G~GKThLa~aia~--~l~~~~g~~v~y~~~  154 (266)
T PRK06921        118 NSIALLGQPGSGKTHLLTAAAN--ELMRKKGVPVLYFPF  154 (266)
T ss_pred             CeEEEECCCCCcHHHHHHHHHH--HHhhhcCceEEEEEH
Confidence            3578999999999999999998  54443 334456653

>PRK04301 radA DNA repair and recombination protein RadA; Validated

Probab=98.42  E-value=1.6e-06  Score=53.88  Aligned_cols=55  Identities=5%  Similarity=-0.040  Sum_probs=37.9

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccC----CCeeEEEEeCCCCCHHHHHHHHHHhhC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFY----FDCHAWVRVSISYDFRMVLDDIIKSVM   58 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~----f~~~~wv~~~~~~~~~~ll~~il~~l~   58 (93)
                      .++-|+|++|+|||+++.+++........    =...+|++....+++..+. ++++.++
T Consensus       103 ~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~g  161 (317)
T PRK04301        103 SITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEALG  161 (317)
T ss_pred             cEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHH-HHHHHcC
Confidence            57789999999999999998863222111    1367899988877776654 3444443

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.41  E-value=2.8e-07  Score=52.02  Aligned_cols=22  Identities=14%  Similarity=-0.041  Sum_probs=20.0

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      --|+|.||+|+||||++.++.+
T Consensus         6 mki~ITG~PGvGKtTl~~ki~e   27 (179)
T COG1618           6 MKIFITGRPGVGKTTLVLKIAE   27 (179)
T ss_pred             eEEEEeCCCCccHHHHHHHHHH
Confidence            3589999999999999999987

>PRK13342 recombination factor protein RarA; Reviewed

Probab=98.41  E-value=1.3e-06  Score=56.10  Aligned_cols=21  Identities=10%  Similarity=-0.005  Sum_probs=19.2

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+.++|++|+||||||+.+++
T Consensus        38 ~ilL~GppGtGKTtLA~~ia~   58 (413)
T PRK13342         38 SMILWGPPGTGKTTLARIIAG   58 (413)
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            467899999999999999988

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=98.40  E-value=1.6e-06  Score=51.45  Aligned_cols=26  Identities=15%  Similarity=0.056  Sum_probs=21.9

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCccccc
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKF   30 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~   30 (93)
                      ..+.|+|.+|+|||.|.+.+++  ++..
T Consensus        35 ~~l~l~G~~G~GKTHLL~Ai~~--~~~~   60 (219)
T PF00308_consen   35 NPLFLYGPSGLGKTHLLQAIAN--EAQK   60 (219)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHH--HHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHH--HHHh
Confidence            3578999999999999999998  5443

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=98.39  E-value=4.6e-06  Score=53.99  Aligned_cols=56  Identities=11%  Similarity=-0.139  Sum_probs=33.6

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCC-CCHHHHHHHHHHhhCC
Q 037564            2 SGCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSIS-YDFRMVLDDIIKSVMP   59 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~ll~~il~~l~~   59 (93)
                      +.+|.++|.+|+||||.+..++.  .+...-.....++.... ....+.+..+.++++.
T Consensus        95 p~vI~lvG~~GsGKTTtaakLA~--~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gv  151 (437)
T PRK00771         95 PQTIMLVGLQGSGKTTTAAKLAR--YFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGV  151 (437)
T ss_pred             CeEEEEECCCCCcHHHHHHHHHH--HHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCC
Confidence            46889999999999999999887  34332112233333221 1224445556666543

>PRK12422 chromosomal replication initiation protein; Provisional

Probab=98.39  E-value=2.4e-06  Score=55.40  Aligned_cols=34  Identities=12%  Similarity=0.004  Sum_probs=24.6

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEE
Q 037564            4 CKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVR   39 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~   39 (93)
                      -+.|+|++|+|||+|++.+++  .+........|++
T Consensus       143 pl~L~G~~G~GKTHLl~Ai~~--~l~~~~~~v~yi~  176 (445)
T PRK12422        143 PIYLFGPEGSGKTHLMQAAVH--ALRESGGKILYVR  176 (445)
T ss_pred             eEEEEcCCCCCHHHHHHHHHH--HHHHcCCCEEEee
Confidence            478999999999999999998  4443222334443

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=98.39  E-value=2.7e-07  Score=49.75  Aligned_cols=20  Identities=15%  Similarity=0.039  Sum_probs=18.7

Q ss_pred             eeEEcCCCCcHHHHHHHHhc
Q 037564            5 KPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~   24 (93)
                      |.|.|.+|+||||+|+.+..
T Consensus         1 I~i~G~~GsGKtTia~~L~~   20 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAE   20 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHH
Confidence            68999999999999999887

...

>PRK04296 thymidine kinase; Provisional

Probab=98.39  E-value=7.3e-07  Score=51.74  Aligned_cols=24  Identities=8%  Similarity=-0.060  Sum_probs=21.0

Q ss_pred             CCceeeEEcCCCCcHHHHHHHHhc
Q 037564            1 FSGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         1 ~~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ++.++.+.|+.|.||||++..++.
T Consensus         1 ~g~i~litG~~GsGKTT~~l~~~~   24 (190)
T PRK04296          1 MAKLEFIYGAMNSGKSTELLQRAY   24 (190)
T ss_pred             CcEEEEEECCCCCHHHHHHHHHHH
Confidence            356888999999999999998887

>PLN03187 meiotic recombination protein DMC1 homolog; Provisional

Probab=98.38  E-value=1e-06  Score=55.38  Aligned_cols=55  Identities=7%  Similarity=-0.025  Sum_probs=38.4

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCccccc----CCCeeEEEEeCCCCCHHHHHHHHHHhhC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKF----YFDCHAWVRVSISYDFRMVLDDIIKSVM   58 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~ll~~il~~l~   58 (93)
                      .++-|.|++|+|||+|+.+++-......    .-...+|++....+++..+.+ +++.++
T Consensus       127 ~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g  185 (344)
T PLN03187        127 CITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFG  185 (344)
T ss_pred             eEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcC
Confidence            4667999999999999998864222221    123578999888888777544 555554

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=98.37  E-value=1.8e-06  Score=55.25  Aligned_cols=26  Identities=15%  Similarity=-0.038  Sum_probs=21.8

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcCcccccC
Q 037564            4 CKPILDSSSFDKTAFTADTYNNNHVKFY   31 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~~~~~~~   31 (93)
                      .+.|+|++|+|||+|++.+++  ++...
T Consensus       138 ~l~l~G~~G~GKThL~~ai~~--~l~~~  163 (405)
T TIGR00362       138 PLFIYGGVGLGKTHLLHAIGN--EILEN  163 (405)
T ss_pred             eEEEECCCCCcHHHHHHHHHH--HHHHh
Confidence            578999999999999999998  54433

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>PRK10867 signal recognition particle protein; Provisional

Probab=98.37  E-value=3.9e-06  Score=54.24  Aligned_cols=23  Identities=9%  Similarity=-0.019  Sum_probs=19.8

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ..+|.++|++|+||||.+.+++.
T Consensus       100 p~vI~~vG~~GsGKTTtaakLA~  122 (433)
T PRK10867        100 PTVIMMVGLQGAGKTTTAGKLAK  122 (433)
T ss_pred             CEEEEEECCCCCcHHHHHHHHHH
Confidence            36889999999999998877766

>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1

Probab=98.36  E-value=1.5e-06  Score=54.05  Aligned_cols=55  Identities=7%  Similarity=-0.002  Sum_probs=38.3

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCccccc----CCCeeEEEEeCCCCCHHHHHHHHHHhhC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKF----YFDCHAWVRVSISYDFRMVLDDIIKSVM   58 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~ll~~il~~l~   58 (93)
                      +++-|+|++|+|||+|+.+++-......    .=..++|++....+++..+. +++++++
T Consensus        97 ~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g  155 (313)
T TIGR02238        97 SITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFG  155 (313)
T ss_pred             eEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcC
Confidence            4677999999999999988764222221    12357899988888877764 4556554

This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.

>TIGR02236 recomb_radA DNA repair and recombination protein RadA

Probab=98.36  E-value=3e-06  Score=52.53  Aligned_cols=55  Identities=5%  Similarity=-0.002  Sum_probs=38.0

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccC----CCeeEEEEeCCCCCHHHHHHHHHHhhC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFY----FDCHAWVRVSISYDFRMVLDDIIKSVM   58 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~----f~~~~wv~~~~~~~~~~ll~~il~~l~   58 (93)
                      .++-|+|++|+|||+++.+++........    -..++|++....++...+. ++++.++
T Consensus        96 ~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~g  154 (310)
T TIGR02236        96 AITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARG  154 (310)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcC
Confidence            57789999999999999998764222111    1267899988888876654 4444443

This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=98.36  E-value=1.3e-06  Score=50.28  Aligned_cols=21  Identities=29%  Similarity=0.232  Sum_probs=19.7

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +|+|.|.+|+||||||+.+..
T Consensus         1 ii~i~G~sgsGKttla~~l~~   21 (179)
T cd02028           1 VVGIAGPSGSGKTTFAKKLSN   21 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999887

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

Probab=98.36  E-value=1.4e-06  Score=50.58  Aligned_cols=21  Identities=14%  Similarity=-0.028  Sum_probs=19.7

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +|+|.|.+|+||||+|+.+..
T Consensus         1 ii~i~G~sgsGKTtla~~l~~   21 (187)
T cd02024           1 IVGISGVTNSGKTTLAKLLQR   21 (187)
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999988

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.36  E-value=3.4e-06  Score=53.58  Aligned_cols=23  Identities=22%  Similarity=0.261  Sum_probs=20.9

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++.++|++|+||||++.++..
T Consensus       137 g~ii~lvGptGvGKTTtiakLA~  159 (374)
T PRK14722        137 GGVFALMGPTGVGKTTTTAKLAA  159 (374)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999999987

>TIGR00959 ffh signal recognition particle protein

Probab=98.36  E-value=3.4e-06  Score=54.47  Aligned_cols=23  Identities=9%  Similarity=-0.073  Sum_probs=20.1

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +.++.++|.+|+||||.+..++.
T Consensus        99 p~vi~~vG~~GsGKTTtaakLA~  121 (428)
T TIGR00959        99 PTVILMVGLQGSGKTTTCGKLAY  121 (428)
T ss_pred             CEEEEEECCCCCcHHHHHHHHHH
Confidence            35889999999999999888776

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>PRK06835 DNA replication protein DnaC; Validated

Probab=98.35  E-value=3.5e-06  Score=52.77  Aligned_cols=35  Identities=6%  Similarity=-0.145  Sum_probs=25.5

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEE
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVR   39 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~   39 (93)
                      .-+.++|.+|+|||.||..+++  .+...-..++|++
T Consensus       184 ~~Lll~G~~GtGKThLa~aIa~--~l~~~g~~V~y~t  218 (329)
T PRK06835        184 ENLLFYGNTGTGKTFLSNCIAK--ELLDRGKSVIYRT  218 (329)
T ss_pred             CcEEEECCCCCcHHHHHHHHHH--HHHHCCCeEEEEE
Confidence            3578999999999999999988  4443323445554

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=98.35  E-value=4.5e-07  Score=49.89  Aligned_cols=21  Identities=5%  Similarity=-0.026  Sum_probs=19.3

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +|.++|++|+||||+|+.+..
T Consensus         1 lii~~G~pgsGKSt~a~~l~~   21 (143)
T PF13671_consen    1 LIILCGPPGSGKSTLAKRLAK   21 (143)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999999885

...

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.34  E-value=7e-06  Score=52.66  Aligned_cols=23  Identities=13%  Similarity=0.049  Sum_probs=20.7

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +++|+++|++|+||||++..++.
T Consensus       241 ~~vI~LVGptGvGKTTTiaKLA~  263 (436)
T PRK11889        241 VQTIALIGPTGVGKTTTLAKMAW  263 (436)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHH
Confidence            36899999999999999999876

>PRK05480 uridine/cytidine kinase; Provisional

Probab=98.33  E-value=4.5e-07  Score=53.16  Aligned_cols=22  Identities=23%  Similarity=0.155  Sum_probs=20.6

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+|+|.|.+|+|||||++.+..
T Consensus         7 ~iI~I~G~sGsGKTTl~~~l~~   28 (209)
T PRK05480          7 IIIGIAGGSGSGKTTVASTIYE   28 (209)
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999999987

>TIGR02239 recomb_RAD51 DNA repair protein RAD51

Probab=98.33  E-value=2.4e-06  Score=53.25  Aligned_cols=55  Identities=9%  Similarity=-0.031  Sum_probs=36.4

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccC----CCeeEEEEeCCCCCHHHHHHHHHHhhC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFY----FDCHAWVRVSISYDFRMVLDDIIKSVM   58 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~----f~~~~wv~~~~~~~~~~ll~~il~~l~   58 (93)
                      .++.|.|.+|+|||+|+..++........    -..++|++....++... +.++++.+.
T Consensus        97 ~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R-l~~ia~~~~  155 (316)
T TIGR02239        97 SITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER-LLAIAERYG  155 (316)
T ss_pred             eEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH-HHHHHHHcC
Confidence            57789999999999999988752122111    12468888777777665 344455443

This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=98.32  E-value=3e-06  Score=54.97  Aligned_cols=28  Identities=14%  Similarity=-0.107  Sum_probs=22.9

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYF   32 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f   32 (93)
                      +-+.|+|++|+|||+|++.+.+  ++...+
T Consensus       149 ~~l~l~G~~G~GKThL~~ai~~--~~~~~~  176 (450)
T PRK00149        149 NPLFIYGGVGLGKTHLLHAIGN--YILEKN  176 (450)
T ss_pred             CeEEEECCCCCCHHHHHHHHHH--HHHHhC
Confidence            3478999999999999999998  555443

>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []

Probab=98.32  E-value=5e-06  Score=51.87  Aligned_cols=84  Identities=12%  Similarity=0.067  Sum_probs=51.5

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHHHHhhCCCCCCccccC-CCHHHHHHHHHH
Q 037564            2 SGCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIG-EDYQLKKSILRD   80 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~il~~l~~~~~~~~~~~-~~~~~l~~~l~~   80 (93)
                      .+++-|.|+.|+||||||-.+..  ..+..-..++|+......++..     ++.++.....-.-.. .+.++..+.+..
T Consensus        53 G~ivEi~G~~ssGKttLaL~~ia--~~q~~g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~P~~~E~al~~~e~  125 (322)
T PF00154_consen   53 GRIVEIYGPESSGKTTLALHAIA--EAQKQGGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQPDTGEQALWIAEQ  125 (322)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHH--HHHHTT-EEEEEESSS---HHH-----HHHTT--GGGEEEEE-SSHHHHHHHHHH
T ss_pred             CceEEEeCCCCCchhhhHHHHHH--hhhcccceeEEecCcccchhhH-----HHhcCccccceEEecCCcHHHHHHHHHH
Confidence            46899999999999999999887  5554556788998877766533     344443221111111 455666666666


Q ss_pred             hcCC-CeEEEEee
Q 037564           81 YLTN-KKYFIVLD   92 (93)
Q Consensus        81 ~L~~-kr~LlVlD   92 (93)
                      .++. .--++|+|
T Consensus       126 lirsg~~~lVVvD  138 (322)
T PF00154_consen  126 LIRSGAVDLVVVD  138 (322)
T ss_dssp             HHHTTSESEEEEE
T ss_pred             HhhcccccEEEEe
Confidence            6644 34588888

In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....

>PRK06526 transposase; Provisional

Probab=98.32  E-value=2.5e-06  Score=51.65  Aligned_cols=22  Identities=14%  Similarity=-0.046  Sum_probs=19.7

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .-+.++|++|+|||+||..+..
T Consensus        99 ~nlll~Gp~GtGKThLa~al~~  120 (254)
T PRK06526         99 ENVVFLGPPGTGKTHLAIGLGI  120 (254)
T ss_pred             ceEEEEeCCCCchHHHHHHHHH
Confidence            3578999999999999999877

>PRK04040 adenylate kinase; Provisional

Probab=98.32  E-value=6.9e-07  Score=51.81  Aligned_cols=24  Identities=8%  Similarity=0.062  Sum_probs=21.7

Q ss_pred             CCceeeEEcCCCCcHHHHHHHHhc
Q 037564            1 FSGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         1 ~~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +..+|+|+|++|+||||+++.+..
T Consensus         1 ~~~~i~v~G~pG~GKtt~~~~l~~   24 (188)
T PRK04040          1 MMKVVVVTGVPGVGKTTVLNKALE   24 (188)
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHH
Confidence            356899999999999999999988

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.32  E-value=8.4e-07  Score=50.00  Aligned_cols=35  Identities=9%  Similarity=-0.264  Sum_probs=26.5

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEE
Q 037564            2 SGCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWV   38 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv   38 (93)
                      +.+|.+.|.+|+||||||+.+..  ++...-....++
T Consensus         2 g~vIwltGlsGsGKtTlA~~L~~--~L~~~g~~~~~L   36 (156)
T PF01583_consen    2 GFVIWLTGLSGSGKTTLARALER--RLFARGIKVYLL   36 (156)
T ss_dssp             -EEEEEESSTTSSHHHHHHHHHH--HHHHTTS-EEEE
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEe
Confidence            35889999999999999999998  665554444554

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>PRK09183 transposase/IS protein; Provisional

Probab=98.31  E-value=6.1e-06  Score=50.11  Aligned_cols=22  Identities=18%  Similarity=0.052  Sum_probs=19.5

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ..+.|+|++|+|||+||..+..
T Consensus       103 ~~v~l~Gp~GtGKThLa~al~~  124 (259)
T PRK09183        103 ENIVLLGPSGVGKTHLAIALGY  124 (259)
T ss_pred             CeEEEEeCCCCCHHHHHHHHHH
Confidence            3577999999999999999976

>TIGR00235 udk uridine kinase

Probab=98.31  E-value=4.9e-07  Score=52.99  Aligned_cols=22  Identities=23%  Similarity=0.089  Sum_probs=20.5

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+|+|.|++|+|||||++.+..
T Consensus         7 ~vi~I~G~sGsGKSTl~~~l~~   28 (207)
T TIGR00235         7 IIIGIGGGSGSGKTTVARKIYE   28 (207)
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999999986

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PRK08972 fliI flagellum-specific ATP synthase; Validated

Probab=98.31  E-value=4.8e-06  Score=53.85  Aligned_cols=87  Identities=10%  Similarity=0.116  Sum_probs=49.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCC-CCHHHHHHHHHHhhCCCCCCcc-c-cCCCH------HH
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSIS-YDFRMVLDDIIKSVMPPSRVSV-I-IGEDY------QL   73 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~ll~~il~~l~~~~~~~~-~-~~~~~------~~   73 (93)
                      ..++|.|.+|+|||||++.+...  ..  .+..++.-+.+. ....++.+.++..-......-. . .+.+.      -.
T Consensus       163 qrigI~G~sG~GKSTLL~~I~~~--~~--~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~  238 (444)
T PRK08972        163 QRMGLFAGSGVGKSVLLGMMTRG--TT--ADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGCE  238 (444)
T ss_pred             CEEEEECCCCCChhHHHHHhccC--CC--CCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHHH
Confidence            46899999999999999999872  22  245555556544 3445566665443211110000 0 00111      11


Q ss_pred             HHHHHHHhc--CCCeEEEEeeC
Q 037564           74 KKSILRDYL--TNKKYFIVLDD   93 (93)
Q Consensus        74 l~~~l~~~L--~~kr~LlVlDD   93 (93)
                      ..-.+-+++  +++++|+++||
T Consensus       239 ~A~tiAEyfrd~G~~VLl~~Ds  260 (444)
T PRK08972        239 TATTIAEYFRDQGLNVLLLMDS  260 (444)
T ss_pred             HHHHHHHHHHHcCCCEEEEEcC
Confidence            122344555  67899999997

>PRK04195 replication factor C large subunit; Provisional

Probab=98.30  E-value=5.1e-06  Score=54.37  Aligned_cols=23  Identities=13%  Similarity=0.118  Sum_probs=20.9

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+.+.|+|++|+||||+|+.+++
T Consensus        39 ~~~lLL~GppG~GKTtla~ala~   61 (482)
T PRK04195         39 KKALLLYGPPGVGKTSLAHALAN   61 (482)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            35688999999999999999998

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=98.30  E-value=2.2e-06  Score=54.24  Aligned_cols=22  Identities=9%  Similarity=0.007  Sum_probs=20.1

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +-+.++|++|+|||++|+.+++
T Consensus       157 ~gvLL~GppGtGKT~lakaia~  178 (364)
T TIGR01242       157 KGVLLYGPPGTGKTLLAKAVAH  178 (364)
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            3478999999999999999998

Many proteins may score above the trusted cutoff because an internal

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=98.30  E-value=6.5e-07  Score=43.84  Aligned_cols=21  Identities=14%  Similarity=0.061  Sum_probs=19.4

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +|+|.|.+|+||||+++.+.+
T Consensus         1 ~i~i~G~~gsGKst~~~~l~~   21 (69)
T cd02019           1 IIAITGGSGSGKSTVAKKLAE   21 (69)
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999999887

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=98.30  E-value=1.1e-05  Score=49.38  Aligned_cols=22  Identities=18%  Similarity=0.095  Sum_probs=19.9

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +++.++|++|+||||++.+++.
T Consensus        73 ~vi~l~G~~G~GKTTt~akLA~   94 (272)
T TIGR00064        73 NVILFVGVNGVGKTTTIAKLAN   94 (272)
T ss_pred             eEEEEECCCCCcHHHHHHHHHH
Confidence            6889999999999999888876

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=98.30  E-value=1.6e-06  Score=49.94  Aligned_cols=22  Identities=14%  Similarity=0.102  Sum_probs=19.8

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .|.|.|++|+||||+|+.+...
T Consensus         2 riiilG~pGaGK~T~A~~La~~   23 (178)
T COG0563           2 RILILGPPGAGKSTLAKKLAKK   23 (178)
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999884

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.29  E-value=1.4e-05  Score=51.54  Aligned_cols=23  Identities=22%  Similarity=0.278  Sum_probs=20.2

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ..+++++|+.|+||||+...+..
T Consensus       191 g~vi~lvGpnG~GKTTtlakLA~  213 (420)
T PRK14721        191 GGVYALIGPTGVGKTTTTAKLAA  213 (420)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999987765

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=98.29  E-value=7.6e-07  Score=50.90  Aligned_cols=23  Identities=13%  Similarity=0.010  Sum_probs=21.3

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +++|.+.|++|+||||+|+.+..
T Consensus         2 ~~~i~l~G~~gsGKst~a~~l~~   24 (175)
T cd00227           2 GRIIILNGGSSAGKSSIARALQS   24 (175)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            57899999999999999999887

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>PRK09519 recA DNA recombination protein RecA; Reviewed

Probab=98.29  E-value=4.1e-06  Score=57.44  Aligned_cols=83  Identities=12%  Similarity=0.059  Sum_probs=51.6

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHHHHhhCCCCCCccccC-CCHHHHHHHHHHh
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIG-EDYQLKKSILRDY   81 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~il~~l~~~~~~~~~~~-~~~~~l~~~l~~~   81 (93)
                      +++-|.|++|+|||||+.+++.  .....-..++|+.....++..     .+++++.....-.-.. .+.+.....+...
T Consensus        61 siteI~G~~GsGKTtLal~~~~--~a~~~G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i~~l  133 (790)
T PRK09519         61 RVIEIYGPESSGKTTVALHAVA--NAQAAGGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIADML  133 (790)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHHHHH
Confidence            5777999999999999988665  222233556888776666632     5566654321111111 4556666666666


Q ss_pred             cCC-CeEEEEee
Q 037564           82 LTN-KKYFIVLD   92 (93)
Q Consensus        82 L~~-kr~LlVlD   92 (93)
                      ++. +--|+|+|
T Consensus       134 v~~~~~~LVVID  145 (790)
T PRK09519        134 IRSGALDIVVID  145 (790)
T ss_pred             hhcCCCeEEEEc
Confidence            644 44578888

>cd01131 PilT Pilus retraction ATPase PilT

Probab=98.28  E-value=1.3e-06  Score=50.98  Aligned_cols=22  Identities=14%  Similarity=0.114  Sum_probs=20.0

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ++|.|.|+.|+||||++..+..
T Consensus         2 GlilI~GptGSGKTTll~~ll~   23 (198)
T cd01131           2 GLVLVTGPTGSGKSTTLAAMID   23 (198)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999998776

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PTZ00035 Rad51 protein; Provisional

Probab=98.28  E-value=1e-05  Score=50.84  Aligned_cols=55  Identities=5%  Similarity=-0.029  Sum_probs=36.0

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCccccc----CCCeeEEEEeCCCCCHHHHHHHHHHhhC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKF----YFDCHAWVRVSISYDFRMVLDDIIKSVM   58 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~ll~~il~~l~   58 (93)
                      .++.|+|.+|+|||+|+..++-..++..    .-..++|+.....+++.. +.++++.+.
T Consensus       119 ~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~er-i~~ia~~~g  177 (337)
T PTZ00035        119 SITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPER-IVQIAERFG  177 (337)
T ss_pred             eEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHH-HHHHHHHhC
Confidence            5778999999999999998875322211    112456888777667665 344455543

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=98.28  E-value=8.8e-07  Score=51.13  Aligned_cols=25  Identities=12%  Similarity=0.046  Sum_probs=22.1

Q ss_pred             CCceeeEEcCCCCcHHHHHHHHhcC
Q 037564            1 FSGCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         1 ~~~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      ++.++.|.|++|+|||||++.+...
T Consensus         1 ~g~~i~l~G~sGsGKsTl~~~l~~~   25 (186)
T PRK10078          1 MGKLIWLMGPSGSGKDSLLAALRQR   25 (186)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcc
Confidence            4568999999999999999999773

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=98.28  E-value=2.8e-06  Score=46.67  Aligned_cols=42  Identities=7%  Similarity=-0.009  Sum_probs=29.3

Q ss_pred             eeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHH
Q 037564            5 KPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLD   51 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~   51 (93)
                      |.++|++|+|||+||+.+++  ...   .....+.++...+..++..
T Consensus         2 vlL~G~~G~GKt~l~~~la~--~~~---~~~~~i~~~~~~~~~dl~g   43 (139)
T PF07728_consen    2 VLLVGPPGTGKTTLARELAA--LLG---RPVIRINCSSDTTEEDLIG   43 (139)
T ss_dssp             EEEEESSSSSHHHHHHHHHH--HHT---CEEEEEE-TTTSTHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHH--Hhh---cceEEEEecccccccccee
Confidence            57899999999999999988  331   1223456677777666543

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.28  E-value=1.1e-05  Score=52.22  Aligned_cols=23  Identities=17%  Similarity=0.215  Sum_probs=20.0

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++.++|++|+||||++..++.
T Consensus       221 ~~~i~~vGptGvGKTTt~~kLA~  243 (424)
T PRK05703        221 GGVVALVGPTGVGKTTTLAKLAA  243 (424)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35899999999999998888776

>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases

Probab=98.27  E-value=2.6e-05  Score=47.37  Aligned_cols=49  Identities=6%  Similarity=-0.098  Sum_probs=32.5

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccC-CCeeEEEEeCCCCCHHHHHHHHHH
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFY-FDCHAWVRVSISYDFRMVLDDIIK   55 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~-f~~~~wv~~~~~~~~~~ll~~il~   55 (93)
                      .++.|.|.+|+||||++.+++.  ..... -..+.|+++..  +..++...+..
T Consensus        31 ~~~~i~g~~G~GKT~l~~~~~~--~~~~~~g~~vl~iS~E~--~~~~~~~r~~~   80 (271)
T cd01122          31 ELIILTAGTGVGKTTFLREYAL--DLITQHGVRVGTISLEE--PVVRTARRLLG   80 (271)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHH--HHHHhcCceEEEEEccc--CHHHHHHHHHH
Confidence            5788999999999999999877  33222 24567777654  33444444433

Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.27  E-value=9.8e-06  Score=49.21  Aligned_cols=22  Identities=9%  Similarity=0.051  Sum_probs=20.5

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++++|.+|+||||+++.+..
T Consensus        40 e~~glVGESG~GKSTlgr~i~~   61 (268)
T COG4608          40 ETLGLVGESGCGKSTLGRLILG   61 (268)
T ss_pred             CEEEEEecCCCCHHHHHHHHHc
Confidence            4789999999999999999988

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=98.27  E-value=6.7e-07  Score=51.99  Aligned_cols=21  Identities=19%  Similarity=0.124  Sum_probs=19.5

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +|+|.|++|+|||||++.+..
T Consensus         1 iigi~G~~GsGKSTl~~~l~~   21 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIE   21 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999876

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.27  E-value=5.5e-06  Score=53.35  Aligned_cols=22  Identities=14%  Similarity=-0.029  Sum_probs=20.0

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .++.++|++|+||||++.+++.
T Consensus       224 ~vi~lvGptGvGKTTtaaKLA~  245 (432)
T PRK12724        224 KVVFFVGPTGSGKTTSIAKLAA  245 (432)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4788999999999999999886

>PRK06696 uridine kinase; Validated

Probab=98.27  E-value=1.8e-06  Score=51.16  Aligned_cols=22  Identities=18%  Similarity=0.061  Sum_probs=20.6

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+|+|.|.+|+||||+|+.+..
T Consensus        23 ~iI~I~G~sgsGKSTlA~~L~~   44 (223)
T PRK06696         23 LRVAIDGITASGKTTFADELAE   44 (223)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999999987

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=98.27  E-value=3.2e-06  Score=53.65  Aligned_cols=23  Identities=9%  Similarity=-0.081  Sum_probs=21.4

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ++.++|||++|.|||.+|+.++.
T Consensus       148 PlgllL~GPPGcGKTllAraiA~  170 (413)
T PLN00020        148 PLILGIWGGKGQGKSFQCELVFK  170 (413)
T ss_pred             CeEEEeeCCCCCCHHHHHHHHHH
Confidence            46789999999999999999999

>PRK08149 ATP synthase SpaL; Validated

Probab=98.26  E-value=1.3e-05  Score=51.85  Aligned_cols=87  Identities=14%  Similarity=0.129  Sum_probs=48.9

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeC-CCCCHHHHHHHHHHhhCCCCCCcc--ccCC------CHHH
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVS-ISYDFRMVLDDIIKSVMPPSRVSV--IIGE------DYQL   73 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~-~~~~~~~ll~~il~~l~~~~~~~~--~~~~------~~~~   73 (93)
                      ..++|.|.+|+|||||+..++...    .-+..++..+. +..+..++....+.........-.  ..+.      ....
T Consensus       152 q~i~I~G~sG~GKTTLl~~i~~~~----~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~~  227 (428)
T PRK08149        152 QRMGIFASAGCGKTSLMNMLIEHS----EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAAL  227 (428)
T ss_pred             CEEEEECCCCCChhHHHHHHhcCC----CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHHH
Confidence            468999999999999999988732    12233333343 344556666666654321111000  0001      1112


Q ss_pred             HHHHHHHhc--CCCeEEEEeeC
Q 037564           74 KKSILRDYL--TNKKYFIVLDD   93 (93)
Q Consensus        74 l~~~l~~~L--~~kr~LlVlDD   93 (93)
                      ..-.+-+++  ++|++|+++||
T Consensus       228 ~a~tiAE~fr~~G~~Vll~~Ds  249 (428)
T PRK08149        228 VATTVAEYFRDQGKRVVLFIDS  249 (428)
T ss_pred             HHHHHHHHHHHcCCCEEEEccc
Confidence            223344454  58999999997

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.26  E-value=1.7e-05  Score=50.71  Aligned_cols=23  Identities=9%  Similarity=-0.019  Sum_probs=20.6

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++.++|+.|+||||++..+..
T Consensus       206 ~~ii~lvGptGvGKTTt~akLA~  228 (407)
T PRK12726        206 HRIISLIGQTGVGKTTTLVKLGW  228 (407)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            36889999999999999998886

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.26  E-value=1.5e-05  Score=51.01  Aligned_cols=23  Identities=13%  Similarity=0.046  Sum_probs=20.5

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +++|.++|+.|+||||.+.+++.
T Consensus       174 ~~vi~lvGptGvGKTTT~aKLA~  196 (388)
T PRK12723        174 KRVFILVGPTGVGKTTTIAKLAA  196 (388)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999988876

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=98.26  E-value=1.4e-05  Score=47.61  Aligned_cols=47  Identities=6%  Similarity=-0.128  Sum_probs=32.5

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHH
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDI   53 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i   53 (93)
                      .++.|.|.+|+|||+++.++..  .....=..+.|++..+  ++.++++++
T Consensus        26 ~~~~i~G~~GsGKt~l~~~~~~--~~~~~g~~~~y~~~e~--~~~~~~~~~   72 (234)
T PRK06067         26 SLILIEGDHGTGKSVLSQQFVY--GALKQGKKVYVITTEN--TSKSYLKQM   72 (234)
T ss_pred             cEEEEECCCCCChHHHHHHHHH--HHHhCCCEEEEEEcCC--CHHHHHHHH
Confidence            5788999999999999999865  2212234567777754  345555553

>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []

Probab=98.25  E-value=3.7e-06  Score=51.32  Aligned_cols=22  Identities=9%  Similarity=-0.108  Sum_probs=17.6

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ..|.|+|.+|+||||+|+++..
T Consensus         2 pLiil~G~P~SGKTt~a~~L~~   23 (270)
T PF08433_consen    2 PLIILCGLPCSGKTTRAKELKK   23 (270)
T ss_dssp             -EEEEE--TTSSHHHHHHHHHH
T ss_pred             EEEEEEcCCCCcHHHHHHHHHH
Confidence            3688999999999999999887

The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.

>PRK03839 putative kinase; Provisional

Probab=98.25  E-value=7.8e-07  Score=50.99  Aligned_cols=21  Identities=14%  Similarity=0.055  Sum_probs=19.6

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .|.|.|++|+||||+++.+++
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~   22 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAE   22 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999999988

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=98.25  E-value=5e-06  Score=53.13  Aligned_cols=22  Identities=9%  Similarity=0.007  Sum_probs=19.9

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +-|.++|++|+|||++|+.+++
T Consensus       166 ~gvLL~GppGtGKT~lAkaia~  187 (389)
T PRK03992        166 KGVLLYGPPGTGKTLLAKAVAH  187 (389)
T ss_pred             CceEEECCCCCChHHHHHHHHH
Confidence            3478899999999999999998

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=98.25  E-value=1.3e-06  Score=51.61  Aligned_cols=37  Identities=5%  Similarity=-0.041  Sum_probs=26.1

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEe
Q 037564            2 SGCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRV   40 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~   40 (93)
                      .+.+.++|++|+|||+||+.+++  .........+|+++
T Consensus        38 ~~~lll~G~~G~GKT~la~~~~~--~~~~~~~~~~~i~~   74 (226)
T TIGR03420        38 DRFLYLWGESGSGKSHLLQAACA--AAEERGKSAIYLPL   74 (226)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH--HHHhcCCcEEEEeH
Confidence            35688999999999999999987  33322333445543

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]

Probab=98.25  E-value=9.7e-06  Score=49.70  Aligned_cols=85  Identities=13%  Similarity=0.022  Sum_probs=52.6

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHHHHh-h---CCCCCCccccCCCHHHHHHHH
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKS-V---MPPSRVSVIIGEDYQLKKSIL   78 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~il~~-l---~~~~~~~~~~~~~~~~l~~~l   78 (93)
                      +++=|+|+.|+||||+|-+++-  ..+..-..++|+.-...+++..+ .++... +   ....+...   .....+++.+
T Consensus        61 ~ItEiyG~~gsGKT~lal~~~~--~aq~~g~~a~fIDtE~~l~p~r~-~~l~~~~~d~l~v~~~~~~---e~q~~i~~~~  134 (279)
T COG0468          61 RITEIYGPESSGKTTLALQLVA--NAQKPGGKAAFIDTEHALDPERA-KQLGVDLLDNLLVSQPDTG---EQQLEIAEKL  134 (279)
T ss_pred             eEEEEecCCCcchhhHHHHHHH--HhhcCCCeEEEEeCCCCCCHHHH-HHHHHhhhcceeEecCCCH---HHHHHHHHHH
Confidence            5778999999999999999887  33333447889998888887654 334443 2   11111111   2333444555


Q ss_pred             HHhcCCCeEEEEeeC
Q 037564           79 RDYLTNKKYFIVLDD   93 (93)
Q Consensus        79 ~~~L~~kr~LlVlDD   93 (93)
                      .....++--|+|+|.
T Consensus       135 ~~~~~~~i~LvVVDS  149 (279)
T COG0468         135 ARSGAEKIDLLVVDS  149 (279)
T ss_pred             HHhccCCCCEEEEec
Confidence            555544345888873

>PRK07594 type III secretion system ATPase SsaN; Validated

Probab=98.24  E-value=1.9e-05  Score=51.11  Aligned_cols=87  Identities=14%  Similarity=0.154  Sum_probs=48.5

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCC-CCCHHHHHHHHHHhhCCCCCCcc--ccC-CCHHH-----
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSI-SYDFRMVLDDIIKSVMPPSRVSV--IIG-EDYQL-----   73 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~ll~~il~~l~~~~~~~~--~~~-~~~~~-----   73 (93)
                      ..++|.|.+|+|||||++.+...  .  +.+...+..+.+ .....+++.+....-........  ..+ ...+.     
T Consensus       156 qrigI~G~sG~GKSTLL~~I~~~--~--~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a~~  231 (433)
T PRK07594        156 QRVGIFSAPGVGKSTLLAMLCNA--P--DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALF  231 (433)
T ss_pred             CEEEEECCCCCCccHHHHHhcCC--C--CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHHHH
Confidence            57899999999999999988873  2  234455555554 34445666655431110000000  001 11111     


Q ss_pred             HHHHHHHhc--CCCeEEEEeeC
Q 037564           74 KKSILRDYL--TNKKYFIVLDD   93 (93)
Q Consensus        74 l~~~l~~~L--~~kr~LlVlDD   93 (93)
                      ..-.+-+++  +++++|+++||
T Consensus       232 ~a~tiAEyfrd~G~~VLl~~Ds  253 (433)
T PRK07594        232 VATTIAEFFRDNGKRVVLLADS  253 (433)
T ss_pred             HHHHHHHHHHHCCCcEEEEEeC
Confidence            122345555  57899999997

>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]

Probab=98.24  E-value=5e-06  Score=50.35  Aligned_cols=48  Identities=15%  Similarity=0.008  Sum_probs=37.6

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHH
Q 037564            2 SGCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDI   53 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i   53 (93)
                      .+++.|.|.+|+|||+++.++..  +.......++|++..+.  ..++++.+
T Consensus        23 g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~vlyvs~~e~--~~~l~~~~   70 (260)
T COG0467          23 GSVVLITGPPGTGKTIFALQFLY--EGAREGEPVLYVSTEES--PEELLENA   70 (260)
T ss_pred             CcEEEEEcCCCCcHHHHHHHHHH--HHHhcCCcEEEEEecCC--HHHHHHHH
Confidence            36889999999999999999998  66666888999987764  34444444

>TIGR03263 guanyl_kin guanylate kinase

Probab=98.24  E-value=1.2e-06  Score=50.08  Aligned_cols=23  Identities=13%  Similarity=0.031  Sum_probs=21.1

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ..+|+|+|++|+|||||++.+..
T Consensus         1 g~ii~l~G~~GsGKsTl~~~L~~   23 (180)
T TIGR03263         1 GLLIVISGPSGVGKSTLVKALLE   23 (180)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHc
Confidence            36899999999999999999988

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.24  E-value=1.1e-05  Score=53.44  Aligned_cols=23  Identities=17%  Similarity=0.199  Sum_probs=20.5

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .++++++|++|+||||++.++..
T Consensus       350 G~vIaLVGPtGvGKTTtaakLAa  372 (559)
T PRK12727        350 GGVIALVGPTGAGKTTTIAKLAQ  372 (559)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999988876

>PRK06893 DNA replication initiation factor; Validated

Probab=98.23  E-value=1.3e-06  Score=52.02  Aligned_cols=37  Identities=16%  Similarity=0.084  Sum_probs=27.1

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVS   41 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~   41 (93)
                      +.+.++|++|+|||+|+..+++  +.........|+.+.
T Consensus        40 ~~l~l~G~~G~GKThL~~ai~~--~~~~~~~~~~y~~~~   76 (229)
T PRK06893         40 PFFYIWGGKSSGKSHLLKAVSN--HYLLNQRTAIYIPLS   76 (229)
T ss_pred             CeEEEECCCCCCHHHHHHHHHH--HHHHcCCCeEEeeHH
Confidence            4578999999999999999998  443333345666654

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=98.22  E-value=1.1e-05  Score=51.81  Aligned_cols=22  Identities=9%  Similarity=0.016  Sum_probs=20.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +-+.++|++|+|||+||+.+++
T Consensus       180 kgvLL~GppGTGKT~LAkalA~  201 (398)
T PTZ00454        180 RGVLLYGPPGTGKTMLAKAVAH  201 (398)
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            4578999999999999999998

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=98.22  E-value=1.2e-06  Score=50.10  Aligned_cols=22  Identities=9%  Similarity=-0.028  Sum_probs=19.9

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .++.|.|++|+||||+++.+..
T Consensus         2 ~~~~i~G~sGsGKttl~~~l~~   23 (179)
T TIGR02322         2 RLIYVVGPSGAGKDTLLDYARA   23 (179)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999998866

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PRK06547 hypothetical protein; Provisional

Probab=98.22  E-value=1.2e-06  Score=50.24  Aligned_cols=23  Identities=17%  Similarity=-0.074  Sum_probs=20.7

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +.+|+|.|++|+||||+|+.+..
T Consensus        15 ~~~i~i~G~~GsGKTt~a~~l~~   37 (172)
T PRK06547         15 MITVLIDGRSGSGKTTLAGALAA   37 (172)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            35789999999999999999987

>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein

Probab=98.22  E-value=2e-05  Score=49.39  Aligned_cols=87  Identities=13%  Similarity=0.163  Sum_probs=48.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeC-CCCCHHHHHHHHHHhhCCCCCCcc--ccCC------CHHH
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVS-ISYDFRMVLDDIIKSVMPPSRVSV--IIGE------DYQL   73 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~-~~~~~~~ll~~il~~l~~~~~~~~--~~~~------~~~~   73 (93)
                      ..++|.|.+|.|||||.+.+...  ...  +...+..+. +.....++....+..-......-.  ..+.      ....
T Consensus        70 qri~I~G~sG~GKTtLl~~Ia~~--~~~--~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~~  145 (326)
T cd01136          70 QRLGIFAGSGVGKSTLLGMIARG--TTA--DVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAAY  145 (326)
T ss_pred             cEEEEECCCCCChHHHHHHHhCC--CCC--CEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHHH
Confidence            47899999999999999998873  221  234444444 344556666555543221110000  0001      1111


Q ss_pred             HHHHHHHhc--CCCeEEEEeeC
Q 037564           74 KKSILRDYL--TNKKYFIVLDD   93 (93)
Q Consensus        74 l~~~l~~~L--~~kr~LlVlDD   93 (93)
                      ..-.+-+++  ++|.+|+++||
T Consensus       146 ~a~~~AEyfr~~g~~Vll~~Ds  167 (326)
T cd01136         146 TATAIAEYFRDQGKDVLLLMDS  167 (326)
T ss_pred             HHHHHHHHHHHcCCCeEEEecc
Confidence            222344444  57899999997

This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.

>PRK06002 fliI flagellum-specific ATP synthase; Validated

Probab=98.22  E-value=1.8e-05  Score=51.41  Aligned_cols=88  Identities=11%  Similarity=0.112  Sum_probs=45.6

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHHHHhhCCCC------CCccccC-CCHHHHH
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSVMPPS------RVSVIIG-EDYQLKK   75 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~il~~l~~~~------~~~~~~~-~~~~~l~   75 (93)
                      ..++|.|.+|+|||||++.+...  .. .....++..-.+..+..++....+.......      ....... ...-...
T Consensus       166 qri~I~G~SGsGKTTLL~~Ia~l--~~-pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~a  242 (450)
T PRK06002        166 QRIGIFAGSGVGKSTLLAMLARA--DA-FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLTA  242 (450)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC--CC-CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHHH
Confidence            47899999999999999988762  21 1222333322234455555554444331110      0000000 0011122


Q ss_pred             HHHHHhc--CCCeEEEEeeC
Q 037564           76 SILRDYL--TNKKYFIVLDD   93 (93)
Q Consensus        76 ~~l~~~L--~~kr~LlVlDD   93 (93)
                      -.+-+++  +++++|+++||
T Consensus       243 ~~iAEyfrd~G~~Vll~~Ds  262 (450)
T PRK06002        243 TAIAEYFRDRGENVLLIVDS  262 (450)
T ss_pred             HHHHHHHHHcCCCEEEeccc
Confidence            2344444  57899999997

>cd01121 Sms Sms (bacterial radA) DNA repair protein

Probab=98.21  E-value=2.4e-05  Score=49.86  Aligned_cols=83  Identities=6%  Similarity=-0.024  Sum_probs=45.8

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHHHHhhCCCCCCccccC-CCHHHHHHHHHHh
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIG-EDYQLKKSILRDY   81 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~il~~l~~~~~~~~~~~-~~~~~l~~~l~~~   81 (93)
                      .++.|.|.+|+|||||+.+++.  .....-...+|++...  +..++... +++++.......-.. .+.+.+.+.+.+ 
T Consensus        83 slvLI~G~pG~GKStLllq~a~--~~a~~g~~VlYvs~EE--s~~qi~~R-a~rlg~~~~~l~l~~e~~le~I~~~i~~-  156 (372)
T cd01121          83 SVILIGGDPGIGKSTLLLQVAA--RLAKRGGKVLYVSGEE--SPEQIKLR-ADRLGISTENLYLLAETNLEDILASIEE-  156 (372)
T ss_pred             eEEEEEeCCCCCHHHHHHHHHH--HHHhcCCeEEEEECCc--CHHHHHHH-HHHcCCCcccEEEEccCcHHHHHHHHHh-
Confidence            5788999999999999999887  3333334566766543  33333222 334442211100011 344555544432 


Q ss_pred             cCCCeEEEEeeC
Q 037564           82 LTNKKYFIVLDD   93 (93)
Q Consensus        82 L~~kr~LlVlDD   93 (93)
                        .+.-++|+|.
T Consensus       157 --~~~~lVVIDS  166 (372)
T cd01121         157 --LKPDLVIIDS  166 (372)
T ss_pred             --cCCcEEEEcc
Confidence              3455788884

This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.

>PRK14974 cell division protein FtsY; Provisional

Probab=98.21  E-value=1.5e-05  Score=50.05  Aligned_cols=23  Identities=13%  Similarity=-0.058  Sum_probs=20.0

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ..+|.++|++|+||||++.+++.
T Consensus       140 ~~vi~~~G~~GvGKTTtiakLA~  162 (336)
T PRK14974        140 PVVIVFVGVNGTGKTTTIAKLAY  162 (336)
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Confidence            35899999999999998887776

>PLN03186 DNA repair protein RAD51 homolog; Provisional

Probab=98.20  E-value=1.8e-05  Score=49.86  Aligned_cols=55  Identities=7%  Similarity=-0.015  Sum_probs=38.3

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccC----CCeeEEEEeCCCCCHHHHHHHHHHhhC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFY----FDCHAWVRVSISYDFRMVLDDIIKSVM   58 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~----f~~~~wv~~~~~~~~~~ll~~il~~l~   58 (93)
                      .++-|.|.+|+|||+|+..++-.......    -..++|++....+++..+ .++++.+.
T Consensus       124 ~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~  182 (342)
T PLN03186        124 SITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFG  182 (342)
T ss_pred             eEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcC
Confidence            46779999999999999887742222111    125789998888887665 45566554

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=98.20  E-value=1.4e-06  Score=49.94  Aligned_cols=23  Identities=9%  Similarity=-0.059  Sum_probs=20.7

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ..+|.|.|++|+||||+|+.+..
T Consensus         3 ~~ii~i~G~~GsGKsTl~~~l~~   25 (188)
T TIGR01360         3 CKIIFIVGGPGSGKGTQCEKIVE   25 (188)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35899999999999999999886

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PRK08084 DNA replication initiation factor; Provisional

Probab=98.19  E-value=4.4e-06  Score=50.00  Aligned_cols=37  Identities=5%  Similarity=0.046  Sum_probs=26.1

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVS   41 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~   41 (93)
                      +.+.++|++|+|||+|+..+++  .....-....|+++.
T Consensus        46 ~~l~l~Gp~G~GKThLl~a~~~--~~~~~~~~v~y~~~~   82 (235)
T PRK08084         46 GYIYLWSREGAGRSHLLHAACA--ELSQRGRAVGYVPLD   82 (235)
T ss_pred             CeEEEECCCCCCHHHHHHHHHH--HHHhCCCeEEEEEHH
Confidence            4678999999999999999887  333222234555554

>PRK00131 aroK shikimate kinase; Reviewed

Probab=98.19  E-value=1.5e-06  Score=49.16  Aligned_cols=23  Identities=4%  Similarity=-0.132  Sum_probs=20.9

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ...|.+.|++|+||||+|+.+..
T Consensus         4 ~~~i~l~G~~GsGKstla~~La~   26 (175)
T PRK00131          4 GPNIVLIGFMGAGKSTIGRLLAK   26 (175)
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHH
Confidence            45789999999999999999988

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=98.19  E-value=3e-06  Score=47.43  Aligned_cols=67  Identities=6%  Similarity=-0.003  Sum_probs=38.6

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHHHHhhCCCCCCccccCCCHHHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLT   83 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~L~   83 (93)
                      -|.|.|-+|+||||++.++..  .    +. .-|+++++-....++....-+...    ..+   .+.+.+.+.|...+.
T Consensus         9 NILvtGTPG~GKstl~~~lae--~----~~-~~~i~isd~vkEn~l~~gyDE~y~----c~i---~DEdkv~D~Le~~m~   74 (176)
T KOG3347|consen    9 NILVTGTPGTGKSTLAERLAE--K----TG-LEYIEISDLVKENNLYEGYDEEYK----CHI---LDEDKVLDELEPLMI   74 (176)
T ss_pred             CEEEeCCCCCCchhHHHHHHH--H----hC-CceEehhhHHhhhcchhccccccc----Ccc---ccHHHHHHHHHHHHh
Confidence            478999999999999999986  2    11 235555543332222222111111    112   567777777776664


Q ss_pred             C
Q 037564           84 N   84 (93)
Q Consensus        84 ~   84 (93)
                      .
T Consensus        75 ~   75 (176)
T KOG3347|consen   75 E   75 (176)
T ss_pred             c
Confidence            3

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=98.18  E-value=2.5e-05  Score=49.98  Aligned_cols=82  Identities=10%  Similarity=-0.042  Sum_probs=40.6

Q ss_pred             CceeeEEcCCCCcHHH-HHHHHhcCcccccCCCeeEEEEeCCCCC-HHHHHHHHHHhhCCCCCCccccCCCHHHHHHHHH
Q 037564            2 SGCKPILDSSSFDKTA-FTADTYNNNHVKFYFDCHAWVRVSISYD-FRMVLDDIIKSVMPPSRVSVIIGEDYQLKKSILR   79 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTt-La~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~~l~   79 (93)
                      .++|.++|+.|+|||| ||+..+... ....=..+..++.....- ..+-++.-++-++.+... .   .+..++...+.
T Consensus       203 ~~vi~LVGPTGVGKTTTlAKLAar~~-~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~v-v---~~~~el~~ai~  277 (407)
T COG1419         203 KRVIALVGPTGVGKTTTLAKLAARYV-MLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEV-V---YSPKELAEAIE  277 (407)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHH-hhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEE-e---cCHHHHHHHHH
Confidence            5799999999999996 555433311 111122344555544332 233333333333433211 1   45555655554


Q ss_pred             HhcCCCeEEE
Q 037564           80 DYLTNKKYFI   89 (93)
Q Consensus        80 ~~L~~kr~Ll   89 (93)
                      . |++++++|
T Consensus       278 ~-l~~~d~IL  286 (407)
T COG1419         278 A-LRDCDVIL  286 (407)
T ss_pred             H-hhcCCEEE
Confidence            3 44555444

>PRK14087 dnaA chromosomal replication initiation protein; Provisional

Probab=98.18  E-value=8.3e-06  Score=53.07  Aligned_cols=21  Identities=24%  Similarity=0.110  Sum_probs=19.4

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      -+.|+|..|+|||+|++.+.+
T Consensus       143 pl~i~G~~G~GKTHLl~Ai~~  163 (450)
T PRK14087        143 PLFIYGESGMGKTHLLKAAKN  163 (450)
T ss_pred             ceEEECCCCCcHHHHHHHHHH
Confidence            478999999999999999988

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=98.18  E-value=1.3e-06  Score=50.05  Aligned_cols=21  Identities=14%  Similarity=0.033  Sum_probs=19.5

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +|.|.|++|+||||+|+.+..
T Consensus         1 ~i~i~G~pGsGKst~a~~la~   21 (183)
T TIGR01359         1 VVFVLGGPGSGKGTQCAKIVE   21 (183)
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999999887

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>PRK00300 gmk guanylate kinase; Provisional

Probab=98.18  E-value=1.7e-06  Score=50.45  Aligned_cols=24  Identities=8%  Similarity=-0.015  Sum_probs=21.5

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhcC
Q 037564            2 SGCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      ..+|+|+|++|+|||||++.+...
T Consensus         5 g~~i~i~G~sGsGKstl~~~l~~~   28 (205)
T PRK00300          5 GLLIVLSGPSGAGKSTLVKALLER   28 (205)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhh
Confidence            468999999999999999999873

>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function

Probab=98.18  E-value=9.7e-06  Score=48.75  Aligned_cols=22  Identities=9%  Similarity=0.087  Sum_probs=19.8

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .-+.+||..|+|||++++.+.+
T Consensus        53 nnvLL~G~rGtGKSSlVkall~   74 (249)
T PF05673_consen   53 NNVLLWGARGTGKSSLVKALLN   74 (249)
T ss_pred             cceEEecCCCCCHHHHHHHHHH
Confidence            4567899999999999999988

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=98.18  E-value=3e-06  Score=48.86  Aligned_cols=24  Identities=8%  Similarity=0.044  Sum_probs=21.5

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhcC
Q 037564            2 SGCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      ..++.|.|++|+||+||++.++.+
T Consensus         4 G~l~vlsgPSG~GKsTl~k~L~~~   27 (191)
T COG0194           4 GLLIVLSGPSGVGKSTLVKALLED   27 (191)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhh
Confidence            457899999999999999999984

>PRK13975 thymidylate kinase; Provisional

Probab=98.18  E-value=1.7e-06  Score=50.08  Aligned_cols=24  Identities=8%  Similarity=-0.154  Sum_probs=22.0

Q ss_pred             CCceeeEEcCCCCcHHHHHHHHhc
Q 037564            1 FSGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         1 ~~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      |...|.|.|+.|+||||+++.+..
T Consensus         1 m~~~I~ieG~~GsGKtT~~~~L~~   24 (196)
T PRK13975          1 MNKFIVFEGIDGSGKTTQAKLLAE   24 (196)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999999988

>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2

Probab=98.17  E-value=3.2e-06  Score=48.68  Aligned_cols=34  Identities=9%  Similarity=-0.040  Sum_probs=27.2

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEE
Q 037564            2 SGCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAW   37 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~w   37 (93)
                      .+++.|+|++|+|||||++.+..  ...+.|...+.
T Consensus         2 ~r~ivl~Gpsg~GK~~l~~~L~~--~~~~~~~~~v~   35 (183)
T PF00625_consen    2 RRPIVLVGPSGSGKSTLAKRLIQ--EFPDKFGRVVS   35 (183)
T ss_dssp             SSEEEEESSTTSSHHHHHHHHHH--HSTTTEEEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH--hccccccccee
Confidence            57899999999999999999988  55556643333

7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=98.17  E-value=1.5e-06  Score=47.92  Aligned_cols=21  Identities=10%  Similarity=-0.072  Sum_probs=19.6

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +|.|.|++|+||||+|+.+..
T Consensus         1 ~I~i~G~~GsGKst~a~~la~   21 (147)
T cd02020           1 IIAIDGPAGSGKSTVAKLLAK   21 (147)
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999887

>PRK00625 shikimate kinase; Provisional

Probab=98.17  E-value=1.5e-06  Score=49.81  Aligned_cols=21  Identities=14%  Similarity=0.041  Sum_probs=19.2

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .|.++||+|+||||+++.+..
T Consensus         2 ~I~LiG~pGsGKTT~~k~La~   22 (173)
T PRK00625          2 QIFLCGLPTVGKTSFGKALAK   22 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999977

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.17  E-value=3.4e-05  Score=52.97  Aligned_cols=23  Identities=22%  Similarity=0.264  Sum_probs=20.6

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .++++++|+.|+||||.+.+++.
T Consensus       185 g~Vi~lVGpnGvGKTTTiaKLA~  207 (767)
T PRK14723        185 GGVLALVGPTGVGKTTTTAKLAA  207 (767)
T ss_pred             CeEEEEECCCCCcHHHHHHHHHh
Confidence            36899999999999999988887

>PRK07667 uridine kinase; Provisional

Probab=98.16  E-value=1.8e-06  Score=50.20  Aligned_cols=22  Identities=27%  Similarity=0.043  Sum_probs=20.4

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+|+|.|.+|+||||+|+.+..
T Consensus        18 ~iIgI~G~~gsGKStla~~L~~   39 (193)
T PRK07667         18 FILGIDGLSRSGKTTFVANLKE   39 (193)
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4889999999999999999887

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=98.15  E-value=1.8e-06  Score=48.00  Aligned_cols=21  Identities=10%  Similarity=0.017  Sum_probs=19.2

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ++.+.|++|+||||+|+.+..
T Consensus         1 li~l~G~~GsGKST~a~~l~~   21 (150)
T cd02021           1 IIVVMGVSGSGKSTVGKALAE   21 (150)
T ss_pred             CEEEEcCCCCCHHHHHHHHHh
Confidence            478999999999999999887

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=98.15  E-value=1.7e-05  Score=48.92  Aligned_cols=22  Identities=14%  Similarity=-0.079  Sum_probs=19.4

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      -+|+|.|.+|+||||+|+.+..
T Consensus        63 ~IIGIaG~~GSGKSTlar~L~~   84 (290)
T TIGR00554        63 YIISIAGSVAVGKSTTARILQA   84 (290)
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999987654

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=98.15  E-value=7.6e-06  Score=48.46  Aligned_cols=50  Identities=12%  Similarity=0.163  Sum_probs=35.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCC-CCHHHHHHHHHHh
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSIS-YDFRMVLDDIIKS   56 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~ll~~il~~   56 (93)
                      .-++|.|.+|+|||+|+..+.++  ..  -+..+++.+.+. ....++.+++...
T Consensus        16 qr~~I~g~~g~GKt~Ll~~i~~~--~~--~d~~V~~~iGer~~Ev~~~~~~~~~~   66 (215)
T PF00006_consen   16 QRIGIFGGAGVGKTVLLQEIANN--QD--ADVVVYALIGERGREVTEFIEELKGE   66 (215)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHH--CT--TTEEEEEEESECHHHHHHHHHHHHHT
T ss_pred             CEEEEEcCcccccchhhHHHHhc--cc--ccceeeeeccccchhHHHHHHHHhhc
Confidence            45789999999999999999883  22  234477777654 4556666666543

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....

>PRK06217 hypothetical protein; Validated

Probab=98.15  E-value=1.8e-06  Score=49.77  Aligned_cols=22  Identities=18%  Similarity=0.037  Sum_probs=20.0

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .|.|.|.+|+||||+|+.+...
T Consensus         3 ~I~i~G~~GsGKSTla~~L~~~   24 (183)
T PRK06217          3 RIHITGASGSGTTTLGAALAER   24 (183)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4889999999999999999874

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=98.14  E-value=2.6e-06  Score=47.06  Aligned_cols=21  Identities=10%  Similarity=0.058  Sum_probs=19.4

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .|+|+|++|+|||||++.+..
T Consensus         1 ~i~i~GpsGsGKstl~~~L~~   21 (137)
T cd00071           1 LIVLSGPSGVGKSTLLKRLLE   21 (137)
T ss_pred             CEEEECCCCCCHHHHHHHHHh
Confidence            478999999999999999988

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PRK06936 type III secretion system ATPase; Provisional

Probab=98.14  E-value=3e-05  Score=50.26  Aligned_cols=87  Identities=11%  Similarity=0.144  Sum_probs=49.6

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCC-CCHHHHHHHHHHhhCCCCCCcc-cc-CCCHHH------
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSIS-YDFRMVLDDIIKSVMPPSRVSV-II-GEDYQL------   73 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~ll~~il~~l~~~~~~~~-~~-~~~~~~------   73 (93)
                      ..++|.|.+|+|||||...+++.  ..  -+.+++.-+.+. ....++.+..+..-......-. .. +.+...      
T Consensus       163 q~~~I~G~sG~GKStLl~~Ia~~--~~--~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~  238 (439)
T PRK06936        163 QRMGIFAAAGGGKSTLLASLIRS--AE--VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKAGF  238 (439)
T ss_pred             CEEEEECCCCCChHHHHHHHhcC--CC--CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHHHH
Confidence            47899999999999999999883  22  245667767554 4445555554432111110000 00 011111      


Q ss_pred             HHHHHHHhc--CCCeEEEEeeC
Q 037564           74 KKSILRDYL--TNKKYFIVLDD   93 (93)
Q Consensus        74 l~~~l~~~L--~~kr~LlVlDD   93 (93)
                      ..-.+-+++  +++++|+++||
T Consensus       239 ~a~tiAEyfrd~G~~Vll~~Ds  260 (439)
T PRK06936        239 VATSIAEYFRDQGKRVLLLMDS  260 (439)
T ss_pred             HHHHHHHHHHHcCCCEEEeccc
Confidence            112344554  57999999997

>PRK09280 F0F1 ATP synthase subunit beta; Validated

Probab=98.13  E-value=2.2e-05  Score=51.20  Aligned_cols=90  Identities=13%  Similarity=0.157  Sum_probs=51.8

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCC-CCCHHHHHHHHHHhhCCCCCCcc-c-cCC-CHH-----H
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSI-SYDFRMVLDDIIKSVMPPSRVSV-I-IGE-DYQ-----L   73 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~ll~~il~~l~~~~~~~~-~-~~~-~~~-----~   73 (93)
                      .-++|.|.+|+|||||+..+....... +=+.++++-+.+ .....++++++...-......-. . .+. ...     .
T Consensus       145 QR~gIfa~~GvGKt~Ll~~i~~~~~~~-~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~~  223 (463)
T PRK09280        145 GKIGLFGGAGVGKTVLIQELINNIAKE-HGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVAL  223 (463)
T ss_pred             CEEEeecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHH
Confidence            457899999999999999876632211 113566766654 44556677777654221111000 0 011 111     1


Q ss_pred             HHHHHHHhc---CCCeEEEEeeC
Q 037564           74 KKSILRDYL---TNKKYFIVLDD   93 (93)
Q Consensus        74 l~~~l~~~L---~~kr~LlVlDD   93 (93)
                      ..-.+-+++   +++++|+++||
T Consensus       224 ~a~tiAEyfrd~~G~~VLll~Ds  246 (463)
T PRK09280        224 TGLTMAEYFRDVEGQDVLLFIDN  246 (463)
T ss_pred             HHHHHHHHHHHhcCCceEEEecc
Confidence            223366666   56899999997

>PRK11823 DNA repair protein RadA; Provisional

Probab=98.13  E-value=3.8e-05  Score=50.01  Aligned_cols=83  Identities=10%  Similarity=0.049  Sum_probs=45.7

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHHHHhhCCCCCCccccC-CCHHHHHHHHHHh
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIG-EDYQLKKSILRDY   81 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~il~~l~~~~~~~~~~~-~~~~~l~~~l~~~   81 (93)
                      .++.|.|.+|+|||||+.+++.  .....-..++|++...  +..++... ++.++.......-.. .+.+.+.+.+.+ 
T Consensus        81 s~~lI~G~pG~GKTtL~lq~a~--~~a~~g~~vlYvs~Ee--s~~qi~~r-a~rlg~~~~~l~~~~e~~l~~i~~~i~~-  154 (446)
T PRK11823         81 SVVLIGGDPGIGKSTLLLQVAA--RLAAAGGKVLYVSGEE--SASQIKLR-AERLGLPSDNLYLLAETNLEAILATIEE-  154 (446)
T ss_pred             EEEEEECCCCCCHHHHHHHHHH--HHHhcCCeEEEEEccc--cHHHHHHH-HHHcCCChhcEEEeCCCCHHHHHHHHHh-
Confidence            4778999999999999999987  3332223456766543  33444333 344442211100011 445555554433 


Q ss_pred             cCCCeEEEEeeC
Q 037564           82 LTNKKYFIVLDD   93 (93)
Q Consensus        82 L~~kr~LlVlDD   93 (93)
                        .+.-++|+|.
T Consensus       155 --~~~~lVVIDS  164 (446)
T PRK11823        155 --EKPDLVVIDS  164 (446)
T ss_pred             --hCCCEEEEec
Confidence              2444788883

>PRK13947 shikimate kinase; Provisional

Probab=98.13  E-value=2e-06  Score=48.83  Aligned_cols=21  Identities=10%  Similarity=-0.045  Sum_probs=19.3

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      -|.|.|++|+||||+|+.+.+
T Consensus         3 ~I~l~G~~GsGKst~a~~La~   23 (171)
T PRK13947          3 NIVLIGFMGTGKTTVGKRVAT   23 (171)
T ss_pred             eEEEEcCCCCCHHHHHHHHHH
Confidence            378999999999999999988

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=98.13  E-value=2.5e-05  Score=50.50  Aligned_cols=23  Identities=9%  Similarity=-0.076  Sum_probs=20.6

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +++|.++|++|+||||++.+++.
T Consensus       100 ~~vi~lvG~~GvGKTTtaaKLA~  122 (429)
T TIGR01425       100 QNVIMFVGLQGSGKTTTCTKLAY  122 (429)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998876

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI

Probab=98.13  E-value=3.4e-05  Score=49.83  Aligned_cols=87  Identities=16%  Similarity=0.166  Sum_probs=47.0

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeC-CCCCHHHHHHHHHHhhCCCCCCcc--ccC-CCHHH-----
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVS-ISYDFRMVLDDIIKSVMPPSRVSV--IIG-EDYQL-----   73 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~-~~~~~~~ll~~il~~l~~~~~~~~--~~~-~~~~~-----   73 (93)
                      ..++|.|.+|+|||||++.+...  ...  +......+. +.....++.+..+..-......-+  ..+ .....     
T Consensus       141 q~i~I~G~sG~GKTtLl~~I~~~--~~~--~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~~  216 (418)
T TIGR03498       141 QRLGIFAGSGVGKSTLLSMLARN--TDA--DVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAAY  216 (418)
T ss_pred             cEEEEECCCCCChHHHHHHHhCC--CCC--CEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHHH
Confidence            47899999999999999988873  221  223333333 344455555554443221110000  001 11111     


Q ss_pred             HHHHHHHhc--CCCeEEEEeeC
Q 037564           74 KKSILRDYL--TNKKYFIVLDD   93 (93)
Q Consensus        74 l~~~l~~~L--~~kr~LlVlDD   93 (93)
                      ..-.+-+++  +++++|+++||
T Consensus       217 ~a~~iAEyfrd~G~~Vll~~Ds  238 (418)
T TIGR03498       217 TATAIAEYFRDQGKDVLLLMDS  238 (418)
T ss_pred             HHHHHHHHHHHcCCCEEEeccc
Confidence            222355555  57899999997

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>PRK05642 DNA replication initiation factor; Validated

Probab=98.13  E-value=6.7e-06  Score=49.21  Aligned_cols=36  Identities=0%  Similarity=-0.036  Sum_probs=25.8

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEe
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRV   40 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~   40 (93)
                      +.+.|+|.+|+|||.|++.+++  +....-..++|++.
T Consensus        46 ~~l~l~G~~G~GKTHLl~a~~~--~~~~~~~~v~y~~~   81 (234)
T PRK05642         46 SLIYLWGKDGVGRSHLLQAACL--RFEQRGEPAVYLPL   81 (234)
T ss_pred             CeEEEECCCCCCHHHHHHHHHH--HHHhCCCcEEEeeH
Confidence            4578999999999999999987  33322233556654

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.12  E-value=4e-05  Score=47.90  Aligned_cols=22  Identities=9%  Similarity=-0.026  Sum_probs=20.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++++|++|+||||++..++.
T Consensus       115 ~vi~lvGpnGsGKTTt~~kLA~  136 (318)
T PRK10416        115 FVILVVGVNGVGKTTTIGKLAH  136 (318)
T ss_pred             eEEEEECCCCCcHHHHHHHHHH
Confidence            5899999999999999998877

>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI

Probab=98.12  E-value=2.1e-05  Score=50.69  Aligned_cols=87  Identities=14%  Similarity=0.179  Sum_probs=46.8

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCC-CCHHHHHHHHHHhhCCCCCCcc-c-cCC-CH-----HH
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSIS-YDFRMVLDDIIKSVMPPSRVSV-I-IGE-DY-----QL   73 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~ll~~il~~l~~~~~~~~-~-~~~-~~-----~~   73 (93)
                      ..++|.|.+|+|||||+..+...  ..  -+..++..+.+. ....++.+.....-......-+ . .+. ..     -.
T Consensus       138 q~~~I~G~sG~GKTtLl~~I~~~--~~--~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a~~  213 (411)
T TIGR03496       138 QRMGIFAGSGVGKSTLLGMMARY--TE--ADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRAAF  213 (411)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcC--CC--CCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHHHH
Confidence            46899999999999999988873  22  133344445443 3445555554433111100000 0 001 11     11


Q ss_pred             HHHHHHHhc--CCCeEEEEeeC
Q 037564           74 KKSILRDYL--TNKKYFIVLDD   93 (93)
Q Consensus        74 l~~~l~~~L--~~kr~LlVlDD   93 (93)
                      ..-.+-+++  +++++|+++||
T Consensus       214 ~a~tiAEyfr~~G~~Vll~~Ds  235 (411)
T TIGR03496       214 YATAIAEYFRDQGKDVLLLMDS  235 (411)
T ss_pred             HHHHHHHHHHHCCCCEEEEEeC
Confidence            122344454  57899999997

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>PRK08927 fliI flagellum-specific ATP synthase; Validated

Probab=98.12  E-value=2.5e-05  Score=50.69  Aligned_cols=87  Identities=15%  Similarity=0.134  Sum_probs=48.8

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCC-CCCHHHHHHHHHHhhCCCCCCcc-c-cCC-CH-----HH
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSI-SYDFRMVLDDIIKSVMPPSRVSV-I-IGE-DY-----QL   73 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~ll~~il~~l~~~~~~~~-~-~~~-~~-----~~   73 (93)
                      ..++|.|.+|+|||||++.+...  ..  -+..++.-+.+ .....++.+..+..-......-. . .+. ..     -.
T Consensus       159 qri~I~G~sG~GKTtLL~~I~~~--~~--~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a~~  234 (442)
T PRK08927        159 QRMGIFAGSGVGKSVLLSMLARN--AD--ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQAAY  234 (442)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhc--cC--CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHHHH
Confidence            57899999999999999998873  22  23445555544 34455666555443221110000 0 001 11     11


Q ss_pred             HHHHHHHhc--CCCeEEEEeeC
Q 037564           74 KKSILRDYL--TNKKYFIVLDD   93 (93)
Q Consensus        74 l~~~l~~~L--~~kr~LlVlDD   93 (93)
                      ..-.+-+++  +++++|+++||
T Consensus       235 ~a~tiAEyfrd~G~~Vll~~Ds  256 (442)
T PRK08927        235 LTLAIAEYFRDQGKDVLCLMDS  256 (442)
T ss_pred             HHHHHHHHHHHCCCcEEEEEeC
Confidence            222345555  57899999997

>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B

Probab=98.12  E-value=3.5e-05  Score=47.18  Aligned_cols=91  Identities=18%  Similarity=0.191  Sum_probs=53.5

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCccc--ccCCCeeEEEEeCCCC-CHHHHHHHHHHhhCCCCCCcc--ccC-CCH-----
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHV--KFYFDCHAWVRVSISY-DFRMVLDDIIKSVMPPSRVSV--IIG-EDY-----   71 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~--~~~f~~~~wv~~~~~~-~~~~ll~~il~~l~~~~~~~~--~~~-~~~-----   71 (93)
                      .-++|.|.+|+|||+|+..+.++..+  +.+-+.++++-+.+.. ...++.+++.+.-......-.  ..+ ...     
T Consensus        70 QR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a  149 (276)
T cd01135          70 QKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIIT  149 (276)
T ss_pred             CEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHH
Confidence            45789999999999999998874321  1224678888887654 556677666654221110000  000 111     


Q ss_pred             HHHHHHHHHhc--C-CCeEEEEeeC
Q 037564           72 QLKKSILRDYL--T-NKKYFIVLDD   93 (93)
Q Consensus        72 ~~l~~~l~~~L--~-~kr~LlVlDD   93 (93)
                      --..-.+-+++  + ++++|+++||
T Consensus       150 ~~~a~aiAEyfrd~~g~~VLl~~D~  174 (276)
T cd01135         150 PRMALTTAEYLAYEKGKHVLVILTD  174 (276)
T ss_pred             HHHHHHHHHHHHhccCCeEEEEEcC
Confidence            11123355565  3 6899999997

These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.

>PRK12597 F0F1 ATP synthase subunit beta; Provisional

Probab=98.12  E-value=1.1e-05  Score=52.53  Aligned_cols=90  Identities=16%  Similarity=0.158  Sum_probs=52.9

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCC-CCCHHHHHHHHHHhhCCCCCCcc-cc-CC------CHHH
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSI-SYDFRMVLDDIIKSVMPPSRVSV-II-GE------DYQL   73 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~ll~~il~~l~~~~~~~~-~~-~~------~~~~   73 (93)
                      .-++|.|.+|+|||||+..+...... .+-+.++++-+.+ .....++.+.+...-......-+ .. +.      ..-.
T Consensus       144 QR~gIfa~~G~GKt~Ll~~~~~~~~~-~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~~  222 (461)
T PRK12597        144 GKTGLFGGAGVGKTVLMMELIFNISK-QHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVVL  222 (461)
T ss_pred             CEEEeecCCCCChhHHHHHHHHHHHh-hCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHHH
Confidence            46799999999999999888874221 2446677776654 34556677766653221111000 00 01      1112


Q ss_pred             HHHHHHHhc--C-CCeEEEEeeC
Q 037564           74 KKSILRDYL--T-NKKYFIVLDD   93 (93)
Q Consensus        74 l~~~l~~~L--~-~kr~LlVlDD   93 (93)
                      ..-.+-+++  + ++++|+++||
T Consensus       223 ~a~tiAEyfrd~~G~~VLl~~Ds  245 (461)
T PRK12597        223 TGLTIAEYLRDEEKEDVLLFIDN  245 (461)
T ss_pred             HHHHHHHHHHHhcCCceEEEecc
Confidence            233455665  3 7899999997

>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

Probab=98.11  E-value=1.1e-05  Score=46.54  Aligned_cols=21  Identities=10%  Similarity=-0.130  Sum_probs=19.8

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +|+|.|+.|+||||+++.+..
T Consensus         2 ~I~ieG~~GsGKtT~~~~L~~   22 (200)
T cd01672           2 FIVFEGIDGAGKTTLIELLAE   22 (200)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999987

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).

>PRK09099 type III secretion system ATPase; Provisional

Probab=98.11  E-value=2.5e-05  Score=50.74  Aligned_cols=87  Identities=10%  Similarity=0.154  Sum_probs=48.0

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeC-CCCCHHHHHHHHHHhhCCCCCCcc-c-cCC-CH-----HH
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVS-ISYDFRMVLDDIIKSVMPPSRVSV-I-IGE-DY-----QL   73 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~-~~~~~~~ll~~il~~l~~~~~~~~-~-~~~-~~-----~~   73 (93)
                      ..++|.|.+|+|||||++.+.....    -+...+..+. +.....++.+.+...-......-. . .+. ..     ..
T Consensus       164 q~~~I~G~sG~GKTtLl~~ia~~~~----~d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a~~  239 (441)
T PRK09099        164 QRMGIFAPAGVGKSTLMGMFARGTQ----CDVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAAY  239 (441)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCC----CCeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHHHH
Confidence            5789999999999999999987322    1233444444 344555555655543221110000 0 001 11     11


Q ss_pred             HHHHHHHhc--CCCeEEEEeeC
Q 037564           74 KKSILRDYL--TNKKYFIVLDD   93 (93)
Q Consensus        74 l~~~l~~~L--~~kr~LlVlDD   93 (93)
                      ..-.+-+++  +++++|+++||
T Consensus       240 ~a~tiAEyfrd~G~~VLl~~Ds  261 (441)
T PRK09099        240 VATAIAEYFRDRGLRVLLMMDS  261 (441)
T ss_pred             HHHHHHHHHHHcCCCEEEeccc
Confidence            222345555  57899999997

>PRK05922 type III secretion system ATPase; Validated

Probab=98.11  E-value=3.9e-05  Score=49.71  Aligned_cols=87  Identities=6%  Similarity=0.112  Sum_probs=47.8

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCC-CCCHHHHHHHHHHhhCCCCCCcc-c-cCC-CHH-----H
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSI-SYDFRMVLDDIIKSVMPPSRVSV-I-IGE-DYQ-----L   73 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~ll~~il~~l~~~~~~~~-~-~~~-~~~-----~   73 (93)
                      ..++|.|.+|+|||||.+.+...  .  .-+...+..+.+ .......+.+...........-+ . .+. ...     .
T Consensus       158 qrigI~G~nG~GKSTLL~~Ia~~--~--~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~~  233 (434)
T PRK05922        158 QRIGVFSEPGSGKSSLLSTIAKG--S--KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAGR  233 (434)
T ss_pred             cEEEEECCCCCChHHHHHHHhcc--C--CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHHH
Confidence            46899999999999999999873  2  223344444433 33444555555443322111100 0 001 111     1


Q ss_pred             HHHHHHHhc--CCCeEEEEeeC
Q 037564           74 KKSILRDYL--TNKKYFIVLDD   93 (93)
Q Consensus        74 l~~~l~~~L--~~kr~LlVlDD   93 (93)
                      ..-.+-+++  +++++|+++||
T Consensus       234 ~a~tiAEyfrd~G~~VLl~~Ds  255 (434)
T PRK05922        234 AAMTIAEYFRDQGHRVLFIMDS  255 (434)
T ss_pred             HHHHHHHHHHHcCCCEEEeccc
Confidence            223355555  57899999997

>PRK12678 transcription termination factor Rho; Provisional

Probab=98.11  E-value=8.2e-06  Score=54.46  Aligned_cols=88  Identities=15%  Similarity=0.078  Sum_probs=45.7

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcCccccc-CCCeeE-EEEeCC-CCCHHHHHHHHHHhhCCCCCCccccC-CCHHHHHHHHH
Q 037564            4 CKPILDSSSFDKTAFTADTYNNNHVKF-YFDCHA-WVRVSI-SYDFRMVLDDIIKSVMPPSRVSVIIG-EDYQLKKSILR   79 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~~~~~~-~f~~~~-wv~~~~-~~~~~~ll~~il~~l~~~~~~~~~~~-~~~~~l~~~l~   79 (93)
                      -..|+|++|+|||||++.+.+  .+.. +-++.+ ++-+.+ +....++.+.+-..+........... .....+.-.+-
T Consensus       418 R~LIvgpp~aGKTtLL~~IAn--~i~~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~~A  495 (672)
T PRK12678        418 RGLIVSPPKAGKTTILQNIAN--AITTNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIERA  495 (672)
T ss_pred             EeEEeCCCCCCHHHHHHHHHH--HHhhcCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHHHH
Confidence            468999999999999999888  3422 223333 344444 33444444333111111111100000 11222333345


Q ss_pred             Hhc--CCCeEEEEeeC
Q 037564           80 DYL--TNKKYFIVLDD   93 (93)
Q Consensus        80 ~~L--~~kr~LlVlDD   93 (93)
                      ++|  +++.+||++|+
T Consensus       496 e~fre~G~dVlillDS  511 (672)
T PRK12678        496 KRLVELGKDVVVLLDS  511 (672)
T ss_pred             HHHHHcCCCEEEEEeC
Confidence            555  67899999996

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=98.11  E-value=3.2e-05  Score=50.82  Aligned_cols=85  Identities=9%  Similarity=-0.040  Sum_probs=51.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHHHHhhCCCCCC-----cc-----ccC-CCH
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSVMPPSRV-----SV-----IIG-EDY   71 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~il~~l~~~~~~-----~~-----~~~-~~~   71 (93)
                      .++.|.|++|+|||||+.+++.  .....-..++|++..+  +..++.+++ +.++.....     ..     ... ...
T Consensus       264 s~~li~G~~G~GKt~l~~~f~~--~~~~~ge~~~y~s~eE--s~~~i~~~~-~~lg~~~~~~~~~g~l~~~~~~p~~~~~  338 (484)
T TIGR02655       264 SIILATGATGTGKTLLVSKFLE--NACANKERAILFAYEE--SRAQLLRNA-YSWGIDFEEMEQQGLLKIICAYPESAGL  338 (484)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEeeC--CHHHHHHHH-HHcCCChHHHhhCCcEEEEEcccccCCh
Confidence            5788999999999999999888  3333334566666544  555555554 344322110     00     001 344


Q ss_pred             HHHHHHHHHhcCC-CeEEEEee
Q 037564           72 QLKKSILRDYLTN-KKYFIVLD   92 (93)
Q Consensus        72 ~~l~~~l~~~L~~-kr~LlVlD   92 (93)
                      ++.+..+.+.+.+ +.-.+|+|
T Consensus       339 ~~~~~~i~~~i~~~~~~~vvID  360 (484)
T TIGR02655       339 EDHLQIIKSEIADFKPARIAID  360 (484)
T ss_pred             HHHHHHHHHHHHHcCCCEEEEc
Confidence            6677777777744 33467777

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model

Probab=98.11  E-value=2.8e-06  Score=46.38  Aligned_cols=27  Identities=11%  Similarity=0.116  Sum_probs=18.4

Q ss_pred             eeEEcCCCCcHHHHHHHHhcCcccccCCC
Q 037564            5 KPILDSSSFDKTAFTADTYNNNHVKFYFD   33 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~~~~~~~~f~   33 (93)
                      +.++|.+|+|||++|+.+..  .+...|.
T Consensus         2 vLleg~PG~GKT~la~~lA~--~~~~~f~   28 (131)
T PF07726_consen    2 VLLEGVPGVGKTTLAKALAR--SLGLSFK   28 (131)
T ss_dssp             EEEES---HHHHHHHHHHHH--HTT--EE
T ss_pred             EeeECCCccHHHHHHHHHHH--HcCCcee
Confidence            57899999999999999998  5555554

AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.

>PRK14530 adenylate kinase; Provisional

Probab=98.11  E-value=3e-06  Score=49.99  Aligned_cols=23  Identities=9%  Similarity=0.016  Sum_probs=20.5

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ...|.|.|++|+||||+|+.+..
T Consensus         3 ~~~I~i~G~pGsGKsT~~~~La~   25 (215)
T PRK14530          3 QPRILLLGAPGAGKGTQSSNLAE   25 (215)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35689999999999999999876

>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5)

Probab=98.10  E-value=2.3e-06  Score=45.30  Aligned_cols=20  Identities=10%  Similarity=0.116  Sum_probs=17.7

Q ss_pred             eeEEcCCCCcHHHHHHHHhc
Q 037564            5 KPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~   24 (93)
                      |.|+|++|+|||+||+.++.
T Consensus         1 I~i~G~~G~GKS~l~~~l~~   20 (107)
T PF00910_consen    1 IWIYGPPGIGKSTLAKELAK   20 (107)
T ss_pred             CEEECCCCCCHHHHHHHHHH
Confidence            56899999999999999665

All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=98.10  E-value=2e-05  Score=51.78  Aligned_cols=21  Identities=10%  Similarity=0.041  Sum_probs=19.3

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      -+.++|++|+|||+||+.++.
T Consensus        90 giLL~GppGtGKT~la~alA~  110 (495)
T TIGR01241        90 GVLLVGPPGTGKTLLAKAVAG  110 (495)
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            477899999999999999988

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>PRK06761 hypothetical protein; Provisional

Probab=98.10  E-value=9.3e-06  Score=49.87  Aligned_cols=23  Identities=13%  Similarity=0.018  Sum_probs=21.6

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +++|.|.|++|+||||+++.+..
T Consensus         3 ~~lIvI~G~~GsGKTTla~~L~~   25 (282)
T PRK06761          3 TKLIIIEGLPGFGKSTTAKMLND   25 (282)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            56899999999999999999998

>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A

Probab=98.10  E-value=3.2e-06  Score=51.68  Aligned_cols=22  Identities=14%  Similarity=0.099  Sum_probs=19.5

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +-+.++|++|+|||++++....
T Consensus        34 ~pvLl~G~~GtGKT~li~~~l~   55 (272)
T PF12775_consen   34 RPVLLVGPSGTGKTSLIQNFLS   55 (272)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHH
T ss_pred             CcEEEECCCCCchhHHHHhhhc
Confidence            3468899999999999999887

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=98.09  E-value=2.3e-05  Score=48.20  Aligned_cols=21  Identities=10%  Similarity=0.010  Sum_probs=18.1

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      -+.++|++|+|||++|+.+..
T Consensus        60 ~vll~G~pGTGKT~lA~~ia~   80 (284)
T TIGR02880        60 HMSFTGNPGTGKTTVALRMAQ   80 (284)
T ss_pred             eEEEEcCCCCCHHHHHHHHHH
Confidence            467899999999999977665

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=98.09  E-value=4e-05  Score=44.13  Aligned_cols=22  Identities=14%  Similarity=-0.032  Sum_probs=20.4

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|.|++|+|||||.+.+..
T Consensus        26 e~~~l~G~nGsGKSTLl~~l~G   47 (177)
T cd03222          26 EVIGIVGPNGTGKTTAVKILAG   47 (177)
T ss_pred             CEEEEECCCCChHHHHHHHHHc
Confidence            4789999999999999999887

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=98.09  E-value=8.1e-06  Score=52.91  Aligned_cols=28  Identities=14%  Similarity=0.073  Sum_probs=22.5

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYF   32 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f   32 (93)
                      +-+.++|++|+|||++|+.+++  +....|
T Consensus       218 ~gVLL~GPPGTGKT~LAraIA~--el~~~f  245 (438)
T PTZ00361        218 KGVILYGPPGTGKTLLAKAVAN--ETSATF  245 (438)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH--hhCCCE
Confidence            3477899999999999999998  444443

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.09  E-value=4.6e-05  Score=50.02  Aligned_cols=23  Identities=22%  Similarity=0.261  Sum_probs=20.8

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .++++++|+.|+||||++.+++.
T Consensus       256 g~Vi~LvGpnGvGKTTTiaKLA~  278 (484)
T PRK06995        256 GGVFALMGPTGVGKTTTTAKLAA  278 (484)
T ss_pred             CcEEEEECCCCccHHHHHHHHHH
Confidence            36899999999999999999887

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=98.09  E-value=2.8e-05  Score=46.31  Aligned_cols=22  Identities=9%  Similarity=-0.065  Sum_probs=20.3

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|.|++|+|||||++.+..
T Consensus        34 ~iigi~G~~GsGKTTl~~~L~~   55 (229)
T PRK09270         34 TIVGIAGPPGAGKSTLAEFLEA   55 (229)
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999998887

>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain

Probab=98.09  E-value=2.7e-05  Score=47.66  Aligned_cols=87  Identities=15%  Similarity=0.158  Sum_probs=46.8

Q ss_pred             ceeeEEcCCCCcHHHHH-HHHhcCcccccCCCe-eEEEEeCCC-CCHHHHHHHHHHhhCCCCCCcc--ccCC-CHHH---
Q 037564            3 GCKPILDSSSFDKTAFT-ADTYNNNHVKFYFDC-HAWVRVSIS-YDFRMVLDDIIKSVMPPSRVSV--IIGE-DYQL---   73 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa-~~~~~~~~~~~~f~~-~~wv~~~~~-~~~~~ll~~il~~l~~~~~~~~--~~~~-~~~~---   73 (93)
                      .-++|.|.+|+|||+|| ..+.+  ..  +-+. ++++-+.+. ....++.+.+.+.-......-+  ..+. ....   
T Consensus        70 Qr~~Ifg~~g~GKt~L~l~~i~~--~~--~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~a  145 (274)
T cd01132          70 QRELIIGDRQTGKTAIAIDTIIN--QK--GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYLA  145 (274)
T ss_pred             CEEEeeCCCCCCccHHHHHHHHH--hc--CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHHH
Confidence            45789999999999996 55555  22  1233 356666554 4456666666653211110000  0001 1111   


Q ss_pred             --HHHHHHHhc--CCCeEEEEeeC
Q 037564           74 --KKSILRDYL--TNKKYFIVLDD   93 (93)
Q Consensus        74 --l~~~l~~~L--~~kr~LlVlDD   93 (93)
                        ..-.+-+++  +++.+|+++||
T Consensus       146 ~~~a~aiAE~fr~~G~~Vlvl~Ds  169 (274)
T cd01132         146 PYTGCAMGEYFMDNGKHALIIYDD  169 (274)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEcC
Confidence              112333444  57899999997

The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.

>PTZ00185 ATPase alpha subunit; Provisional

Probab=98.09  E-value=8.6e-05  Score=49.17  Aligned_cols=91  Identities=13%  Similarity=0.135  Sum_probs=49.8

Q ss_pred             ceeeEEcCCCCcHHHHH-HHHhcCccc-----ccCCCeeEEEEeCCCCCHHHHHHHHHHhhCCCCCCcc--c-cCC-CHH
Q 037564            3 GCKPILDSSSFDKTAFT-ADTYNNNHV-----KFYFDCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSV--I-IGE-DYQ   72 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa-~~~~~~~~~-----~~~f~~~~wv~~~~~~~~~~ll~~il~~l~~~~~~~~--~-~~~-~~~   72 (93)
                      .-++|.|.+|+|||+|| ..+.+...+     ..+-..++|+.+.+..+...-+.+.+++-+.-.....  . .+. ...
T Consensus       190 QR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~~  269 (574)
T PTZ00185        190 QRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAGL  269 (574)
T ss_pred             CEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHHH
Confidence            35789999999999997 555664322     1233567888888766543334444444331111100  0 001 111


Q ss_pred             H-----HHHHHHHhc--CCCeEEEEeeC
Q 037564           73 L-----KKSILRDYL--TNKKYFIVLDD   93 (93)
Q Consensus        73 ~-----l~~~l~~~L--~~kr~LlVlDD   93 (93)
                      +     ..-.+-+++  +++.+|+|+||
T Consensus       270 r~~Apy~a~tiAEYFrd~GkdVLiv~DD  297 (574)
T PTZ00185        270 QYLAPYSGVTMGEYFMNRGRHCLCVYDD  297 (574)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCEEEEEcC
Confidence            1     112234444  57899999998

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=98.09  E-value=3.8e-06  Score=48.17  Aligned_cols=23  Identities=17%  Similarity=-0.038  Sum_probs=21.0

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ..+++|+|.+|+|||||++.+..
T Consensus         6 ~~ii~ivG~sgsGKTTLi~~li~   28 (173)
T PRK10751          6 IPLLAIAAWSGTGKTTLLKKLIP   28 (173)
T ss_pred             ceEEEEECCCCChHHHHHHHHHH
Confidence            45899999999999999999887

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=98.08  E-value=6.6e-06  Score=49.30  Aligned_cols=22  Identities=14%  Similarity=0.021  Sum_probs=20.1

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      -+++|+|.+|+|||||++.+..
T Consensus        34 e~lgivGeSGsGKSTL~r~l~G   55 (252)
T COG1124          34 ETLGIVGESGSGKSTLARLLAG   55 (252)
T ss_pred             CEEEEEcCCCCCHHHHHHHHhc
Confidence            4789999999999999999876

>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]

Probab=98.08  E-value=8.6e-06  Score=50.87  Aligned_cols=24  Identities=17%  Similarity=0.065  Sum_probs=20.8

Q ss_pred             CCceeeEEcCCCCcHHHHHHHHhc
Q 037564            1 FSGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         1 ~~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +++++.+.|.||+||||+|....-
T Consensus         1 ~~riv~f~GKGGVGKTT~aaA~A~   24 (322)
T COG0003           1 MTRIVFFTGKGGVGKTTIAAATAV   24 (322)
T ss_pred             CcEEEEEecCCcccHHHHHHHHHH
Confidence            468999999999999999988554

>PHA00729 NTP-binding motif containing protein

Probab=98.08  E-value=2.9e-06  Score=50.47  Aligned_cols=21  Identities=14%  Similarity=0.183  Sum_probs=19.3

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      -|.|.|.+|+||||||..+.+
T Consensus        19 nIlItG~pGvGKT~LA~aLa~   39 (226)
T PHA00729         19 SAVIFGKQGSGKTTYALKVAR   39 (226)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999988

>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]

Probab=98.07  E-value=1.1e-05  Score=47.46  Aligned_cols=23  Identities=9%  Similarity=-0.073  Sum_probs=21.5

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +.+|+|-||=|+||||||+.+.+
T Consensus         4 ~~~IvI~G~IG~GKSTLa~~La~   26 (216)
T COG1428           4 AMVIVIEGMIGAGKSTLAQALAE   26 (216)
T ss_pred             ccEEEEecccccCHHHHHHHHHH
Confidence            56899999999999999999988

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.07  E-value=1.9e-05  Score=53.03  Aligned_cols=22  Identities=9%  Similarity=0.016  Sum_probs=20.0

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +=+.++|++|.|||.||+.+..
T Consensus       224 rGvLlHGPPGCGKT~lA~AiAg  245 (802)
T KOG0733|consen  224 RGVLLHGPPGCGKTSLANAIAG  245 (802)
T ss_pred             CceeeeCCCCccHHHHHHHHhh
Confidence            4467899999999999999999

>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic

Probab=98.07  E-value=3.3e-05  Score=48.66  Aligned_cols=21  Identities=5%  Similarity=-0.048  Sum_probs=18.7

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ++++.|++|+||||+++.+.+
T Consensus         1 ~~~l~Gl~GaGKST~~~~l~~   21 (340)
T TIGR03575         1 LCVLCGLPAAGKSTLARSLSA   21 (340)
T ss_pred             CeEEECCCCCCHHHHHHHHHH
Confidence            367899999999999999887

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.

>PRK00889 adenylylsulfate kinase; Provisional

Probab=98.06  E-value=3.8e-06  Score=47.96  Aligned_cols=23  Identities=13%  Similarity=-0.107  Sum_probs=20.8

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ..+|.+.|++|+||||+|+.+..
T Consensus         4 g~~i~~~G~~GsGKST~a~~la~   26 (175)
T PRK00889          4 GVTVWFTGLSGAGKTTIARALAE   26 (175)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35889999999999999999887

>PRK06793 fliI flagellum-specific ATP synthase; Validated

Probab=98.06  E-value=4.1e-05  Score=49.62  Aligned_cols=87  Identities=14%  Similarity=0.127  Sum_probs=47.8

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeC-CCCCHHHHHHHHHHhhCCCCCCcc-c-cCC------CHHH
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVS-ISYDFRMVLDDIIKSVMPPSRVSV-I-IGE------DYQL   73 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~-~~~~~~~ll~~il~~l~~~~~~~~-~-~~~------~~~~   73 (93)
                      ..++|.|.+|+|||||+..++...  +.  +......+. +.....+++++.+..-+.....-. . .+.      ....
T Consensus       157 qri~I~G~sG~GKTtLl~~Ia~~~--~~--~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~~  232 (432)
T PRK06793        157 QKIGIFAGSGVGKSTLLGMIAKNA--KA--DINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAAK  232 (432)
T ss_pred             cEEEEECCCCCChHHHHHHHhccC--CC--CeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHHH
Confidence            478999999999999999988732  21  222222333 335666666655544221110000 0 001      1112


Q ss_pred             HHHHHHHhc--CCCeEEEEeeC
Q 037564           74 KKSILRDYL--TNKKYFIVLDD   93 (93)
Q Consensus        74 l~~~l~~~L--~~kr~LlVlDD   93 (93)
                      ....+.+++  +++++|+++||
T Consensus       233 ~a~~iAEyfr~~G~~VLlilDs  254 (432)
T PRK06793        233 LATSIAEYFRDQGNNVLLMMDS  254 (432)
T ss_pred             HHHHHHHHHHHcCCcEEEEecc
Confidence            223344444  57899999997

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=98.06  E-value=3.7e-06  Score=51.69  Aligned_cols=24  Identities=4%  Similarity=-0.013  Sum_probs=21.5

Q ss_pred             CCceeeEEcCCCCcHHHHHHHHhc
Q 037564            1 FSGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         1 ~~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      |..+|.+.|++|+||||+|+.+..
T Consensus         1 m~~liil~G~pGSGKSTla~~L~~   24 (300)
T PHA02530          1 MMKIILTVGVPGSGKSTWAREFAA   24 (300)
T ss_pred             CcEEEEEEcCCCCCHHHHHHHHHH
Confidence            457889999999999999999877

>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=98.06  E-value=3.5e-05  Score=47.09  Aligned_cols=21  Identities=14%  Similarity=0.026  Sum_probs=19.4

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +|+|.|.+|+||||+++.+.+
T Consensus         1 IIgItG~SGSGKTTv~~~l~~   21 (277)
T cd02029           1 VIAVTGSSGAGTTTVKRAFEH   21 (277)
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998876

PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=98.06  E-value=7.9e-05  Score=42.33  Aligned_cols=23  Identities=13%  Similarity=-0.058  Sum_probs=20.9

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .+++|.|++|.|||||++.+...
T Consensus        28 e~~~i~G~nGsGKSTLl~~l~G~   50 (166)
T cd03223          28 DRLLITGPSGTGKSSLFRALAGL   50 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            47899999999999999999884

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>PRK13949 shikimate kinase; Provisional

Probab=98.06  E-value=3.6e-06  Score=48.05  Aligned_cols=21  Identities=10%  Similarity=-0.080  Sum_probs=19.4

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      -|.|+|++|+||||+++.+..
T Consensus         3 ~I~liG~~GsGKstl~~~La~   23 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALAR   23 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999999887

>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=98.06  E-value=1.9e-05  Score=53.83  Aligned_cols=39  Identities=15%  Similarity=0.065  Sum_probs=26.5

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSI   42 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~   42 (93)
                      +-|-+.|+.|+|||+|++.+++... +++.-...++.++.
T Consensus       432 ~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~  470 (952)
T KOG0735|consen  432 GNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCST  470 (952)
T ss_pred             ccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechh
Confidence            4577899999999999999999432 22233334555443

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=98.05  E-value=3.3e-06  Score=47.63  Aligned_cols=20  Identities=5%  Similarity=0.066  Sum_probs=18.2

Q ss_pred             eeEEcCCCCcHHHHHHHHhc
Q 037564            5 KPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~   24 (93)
                      |.+.|++|+||||+|+.+..
T Consensus         1 i~l~G~~GsGKSTla~~l~~   20 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAH   20 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHH
Confidence            56899999999999999887

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>PRK03731 aroL shikimate kinase II; Reviewed

Probab=98.05  E-value=4.6e-06  Score=47.41  Aligned_cols=24  Identities=8%  Similarity=0.001  Sum_probs=21.2

Q ss_pred             CCceeeEEcCCCCcHHHHHHHHhc
Q 037564            1 FSGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         1 ~~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      |+..|.++|++|+||||+|+.+..
T Consensus         1 ~~~~i~~~G~~GsGKst~~~~la~   24 (171)
T PRK03731          1 MTQPLFLVGARGCGKTTVGMALAQ   24 (171)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHH
Confidence            346788999999999999999987

>PRK15453 phosphoribulokinase; Provisional

Probab=98.05  E-value=7e-05  Score=46.10  Aligned_cols=22  Identities=14%  Similarity=-0.022  Sum_probs=20.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+|+|.|.+|+||||+|+.+.+
T Consensus         6 piI~ItG~SGsGKTTva~~l~~   27 (290)
T PRK15453          6 PIIAVTGSSGAGTTTVKRAFEK   27 (290)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999998875

>PRK14737 gmk guanylate kinase; Provisional

Probab=98.05  E-value=6e-06  Score=47.84  Aligned_cols=23  Identities=9%  Similarity=-0.077  Sum_probs=21.0

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .++|.|+|++|+|||||++.+..
T Consensus         4 ~~~ivl~GpsG~GK~tl~~~l~~   26 (186)
T PRK14737          4 PKLFIISSVAGGGKSTIIQALLE   26 (186)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHh
Confidence            46889999999999999999987

>PRK05688 fliI flagellum-specific ATP synthase; Validated

Probab=98.05  E-value=5.1e-05  Score=49.38  Aligned_cols=87  Identities=9%  Similarity=0.087  Sum_probs=47.0

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCC-CCHHHHHHHHHHhhCCCCCCcc--ccC-CCHH-----H
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSIS-YDFRMVLDDIIKSVMPPSRVSV--IIG-EDYQ-----L   73 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~ll~~il~~l~~~~~~~~--~~~-~~~~-----~   73 (93)
                      ..++|.|.+|+|||||++.+...  .  ..+..++..+... ....++...+...-......-+  ..+ ....     .
T Consensus       169 qrigI~G~sG~GKSTLl~~I~g~--~--~~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a~~  244 (451)
T PRK05688        169 QRLGLFAGTGVGKSVLLGMMTRF--T--EADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAAM  244 (451)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC--C--CCCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHHHH
Confidence            47899999999999999988772  1  1233333344433 3445555555443221110000  000 1111     1


Q ss_pred             HHHHHHHhc--CCCeEEEEeeC
Q 037564           74 KKSILRDYL--TNKKYFIVLDD   93 (93)
Q Consensus        74 l~~~l~~~L--~~kr~LlVlDD   93 (93)
                      ..-.+-+++  +++++|+++||
T Consensus       245 ~a~aiAEyfrd~G~~VLl~~Ds  266 (451)
T PRK05688        245 YCTRIAEYFRDKGKNVLLLMDS  266 (451)
T ss_pred             HHHHHHHHHHHCCCCEEEEecc
Confidence            122345555  57899999997

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=98.05  E-value=6.9e-06  Score=47.10  Aligned_cols=45  Identities=9%  Similarity=0.010  Sum_probs=29.6

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHH
Q 037564            4 CKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDD   52 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~   52 (93)
                      ++.|.|++|+|||+|+.++...  ....=..+.|++...  +..++.+.
T Consensus         1 ~~li~G~~G~GKT~l~~~~~~~--~~~~g~~v~~~s~e~--~~~~~~~~   45 (187)
T cd01124           1 STLLSGGPGTGKTTFALQFLYA--GLARGEPGLYVTLEE--SPEELIEN   45 (187)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHH--HHHCCCcEEEEECCC--CHHHHHHH
Confidence            3678999999999999988763  222224566776544  34444444

A related protein is found in archaea.

>smart00072 GuKc Guanylate kinase homologues

Probab=98.04  E-value=6.8e-06  Score=47.39  Aligned_cols=23  Identities=13%  Similarity=0.046  Sum_probs=21.5

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+.+.++|++|+||+||+..+..
T Consensus         2 ~r~ivl~Gpsg~GK~tl~~~L~~   24 (184)
T smart00072        2 RRPIVLSGPSGVGKGTLLAELIQ   24 (184)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHh
Confidence            57899999999999999999988

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.

>PRK05439 pantothenate kinase; Provisional

Probab=98.04  E-value=2.7e-05  Score=48.46  Aligned_cols=22  Identities=14%  Similarity=-0.130  Sum_probs=20.1

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      -+|+|.|.+|+||||+|+.+..
T Consensus        87 ~iIgIaG~~gsGKSTla~~L~~  108 (311)
T PRK05439         87 FIIGIAGSVAVGKSTTARLLQA  108 (311)
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999998876

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=98.04  E-value=4.2e-06  Score=47.77  Aligned_cols=20  Identities=15%  Similarity=0.009  Sum_probs=18.4

Q ss_pred             eeeEEcCCCCcHHHHHHHHh
Q 037564            4 CKPILDSSSFDKTAFTADTY   23 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~   23 (93)
                      .|+|.|.+|+||||+++.+.
T Consensus         2 ~I~ITGTPGvGKTT~~~~L~   21 (180)
T COG1936           2 LIAITGTPGVGKTTVCKLLR   21 (180)
T ss_pred             eEEEeCCCCCchHHHHHHHH
Confidence            58999999999999999886

>PRK13946 shikimate kinase; Provisional

Probab=98.04  E-value=5e-06  Score=47.96  Aligned_cols=23  Identities=4%  Similarity=-0.071  Sum_probs=20.9

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+.|.+.|++|+||||+++.+..
T Consensus        10 ~~~I~l~G~~GsGKsti~~~LA~   32 (184)
T PRK13946         10 KRTVVLVGLMGAGKSTVGRRLAT   32 (184)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            36789999999999999999987

>PTZ00088 adenylate kinase 1; Provisional

Probab=98.04  E-value=6.7e-06  Score=49.12  Aligned_cols=20  Identities=10%  Similarity=0.122  Sum_probs=18.8

Q ss_pred             eeEEcCCCCcHHHHHHHHhc
Q 037564            5 KPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~   24 (93)
                      |.|.|++|+||||+|+.+..
T Consensus         9 Ivl~G~PGsGK~T~a~~La~   28 (229)
T PTZ00088          9 IVLFGAPGVGKGTFAEILSK   28 (229)
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78899999999999999877

>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU)

Probab=98.04  E-value=3.8e-05  Score=43.94  Aligned_cols=47  Identities=9%  Similarity=0.086  Sum_probs=33.1

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHHHHh
Q 037564            4 CKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKS   56 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~il~~   56 (93)
                      ++.|.|.+|+|||++|.++...     ......|+.-.+.++. ++.+.|...
T Consensus         1 ~~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~-em~~rI~~H   47 (169)
T cd00544           1 IILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDD-EMAERIARH   47 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCH-HHHHHHHHH
Confidence            4678999999999999998762     2235667766666654 455555553

CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.

>PRK14086 dnaA chromosomal replication initiation protein; Provisional

Probab=98.04  E-value=2.9e-05  Score=52.18  Aligned_cols=21  Identities=19%  Similarity=0.020  Sum_probs=19.7

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+.|+|.+|+|||.|+..+++
T Consensus       316 pL~LyG~sGsGKTHLL~AIa~  336 (617)
T PRK14086        316 PLFIYGESGLGKTHLLHAIGH  336 (617)
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999998

>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]

Probab=98.03  E-value=3.9e-06  Score=51.45  Aligned_cols=20  Identities=15%  Similarity=0.160  Sum_probs=18.7

Q ss_pred             eeEEcCCCCcHHHHHHHHhc
Q 037564            5 KPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +.+.|++|.||||||..+++
T Consensus        55 vLl~GPPGlGKTTLA~IIA~   74 (332)
T COG2255          55 VLLFGPPGLGKTTLAHIIAN   74 (332)
T ss_pred             EEeeCCCCCcHHHHHHHHHH
Confidence            56899999999999999999

>PRK13948 shikimate kinase; Provisional

Probab=98.03  E-value=4.9e-06  Score=48.08  Aligned_cols=23  Identities=4%  Similarity=-0.120  Sum_probs=20.8

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ++.|.+.|+.|+||||+++.+..
T Consensus        10 ~~~I~LiG~~GsGKSTvg~~La~   32 (182)
T PRK13948         10 VTWVALAGFMGTGKSRIGWELSR   32 (182)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            46789999999999999999987

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=98.03  E-value=7.9e-05  Score=42.80  Aligned_cols=22  Identities=14%  Similarity=0.077  Sum_probs=20.5

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|.|.+|+|||||++.++.
T Consensus        26 ~~~~l~G~nGsGKStLl~~i~G   47 (180)
T cd03214          26 EIVGILGPNGAGKSTLLKTLAG   47 (180)
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            4789999999999999999987

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]

Probab=98.03  E-value=8e-05  Score=47.90  Aligned_cols=81  Identities=11%  Similarity=0.050  Sum_probs=48.3

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHHHHhhCCCCCCccccC-CCHHHHHHHHHHh
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIG-EDYQLKKSILRDY   81 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~il~~l~~~~~~~~~~~-~~~~~l~~~l~~~   81 (93)
                      .+|.|-|-+|+|||||.-++..  ++...- .+.||  +...+..++ +--+++++.+.....-.. .+.++..+.+.+ 
T Consensus        94 s~iLIgGdPGIGKSTLLLQva~--~lA~~~-~vLYV--sGEES~~Qi-klRA~RL~~~~~~l~l~aEt~~e~I~~~l~~-  166 (456)
T COG1066          94 SVILIGGDPGIGKSTLLLQVAA--RLAKRG-KVLYV--SGEESLQQI-KLRADRLGLPTNNLYLLAETNLEDIIAELEQ-  166 (456)
T ss_pred             cEEEEccCCCCCHHHHHHHHHH--HHHhcC-cEEEE--eCCcCHHHH-HHHHHHhCCCccceEEehhcCHHHHHHHHHh-
Confidence            4788899999999999999988  555433 45555  444454443 222345553332111111 455555555544 


Q ss_pred             cCCCeEEEEee
Q 037564           82 LTNKKYFIVLD   92 (93)
Q Consensus        82 L~~kr~LlVlD   92 (93)
                        .+.-|+|+|
T Consensus       167 --~~p~lvVID  175 (456)
T COG1066         167 --EKPDLVVID  175 (456)
T ss_pred             --cCCCEEEEe
Confidence              566788888

>PRK03846 adenylylsulfate kinase; Provisional

Probab=98.02  E-value=4.9e-06  Score=48.52  Aligned_cols=23  Identities=9%  Similarity=-0.132  Sum_probs=20.8

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +.+|.+.|++|+||||||+.+..
T Consensus        24 ~~~i~i~G~~GsGKSTla~~l~~   46 (198)
T PRK03846         24 GVVLWFTGLSGSGKSTVAGALEE   46 (198)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            35899999999999999999887

>PRK12339 2-phosphoglycerate kinase; Provisional

Probab=98.02  E-value=5.1e-06  Score=48.57  Aligned_cols=23  Identities=17%  Similarity=0.006  Sum_probs=21.1

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +.+|.|.|.+|+||||+|+.+..
T Consensus         3 ~~~i~i~G~~G~GKst~a~~l~~   25 (197)
T PRK12339          3 STIHFIGGIPGVGKTSISGYIAR   25 (197)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46889999999999999999988

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=98.02  E-value=6.2e-06  Score=48.90  Aligned_cols=22  Identities=0%  Similarity=-0.090  Sum_probs=20.1

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +.+.++|++|+|||+||+.+++
T Consensus        43 ~~~~l~G~~G~GKT~La~ai~~   64 (227)
T PRK08903         43 RFFYLWGEAGSGRSHLLQALVA   64 (227)
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4688999999999999999988

>CHL00176 ftsH cell division protein; Validated

Probab=98.02  E-value=2.7e-05  Score=52.64  Aligned_cols=22  Identities=9%  Similarity=0.013  Sum_probs=19.9

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +-+.++|++|+|||+||+.++.
T Consensus       217 ~gVLL~GPpGTGKT~LAralA~  238 (638)
T CHL00176        217 KGVLLVGPPGTGKTLLAKAIAG  238 (638)
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            3478999999999999999988

>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family

Probab=98.02  E-value=2.4e-05  Score=46.86  Aligned_cols=48  Identities=8%  Similarity=-0.043  Sum_probs=33.8

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHHH
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDII   54 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~il   54 (93)
                      .++.|.|.+|+|||++|.++..  +....-..++|++...  ++.++.+++.
T Consensus        22 s~~lI~G~pGsGKT~la~~~l~--~~~~~ge~~lyvs~ee--~~~~i~~~~~   69 (237)
T TIGR03877        22 NVVLLSGGPGTGKSIFSQQFLW--NGLQMGEPGIYVALEE--HPVQVRRNMA   69 (237)
T ss_pred             eEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEEEeeC--CHHHHHHHHH
Confidence            5788999999999999998766  2222345678887655  4555655543

Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.

>TIGR00763 lon ATP-dependent protease La

Probab=98.01  E-value=1.6e-05  Score=54.87  Aligned_cols=22  Identities=9%  Similarity=0.063  Sum_probs=20.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .++.++|++|+|||++|+.+++
T Consensus       348 ~~lll~GppG~GKT~lAk~iA~  369 (775)
T TIGR00763       348 PILCLVGPPGVGKTSLGKSIAK  369 (775)
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            3688999999999999999998

This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.

>PRK13768 GTPase; Provisional

Probab=98.01  E-value=9.8e-06  Score=49.05  Aligned_cols=24  Identities=17%  Similarity=0.059  Sum_probs=20.8

Q ss_pred             CCceeeEEcCCCCcHHHHHHHHhc
Q 037564            1 FSGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         1 ~~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      |..++.+.|++|+||||++..+..
T Consensus         1 ~~~~i~v~G~~G~GKTt~~~~~~~   24 (253)
T PRK13768          1 MMYIVFFLGTAGSGKTTLTKALSD   24 (253)
T ss_pred             CcEEEEEECCCCccHHHHHHHHHH
Confidence            456899999999999999888776

>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta

Probab=98.01  E-value=2.4e-05  Score=50.87  Aligned_cols=90  Identities=10%  Similarity=0.156  Sum_probs=53.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCC-CCHHHHHHHHHHhhCCCCCCcc-c-cCC------CHHH
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSIS-YDFRMVLDDIIKSVMPPSRVSV-I-IGE------DYQL   73 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~ll~~il~~l~~~~~~~~-~-~~~------~~~~   73 (93)
                      .-++|.|.+|+|||+|+..+..+.. ..+-+.++|+-+.+. ....++.+++...-......-+ . .+.      ..-.
T Consensus       139 Qr~~Ifg~~G~GKt~l~~~~~~~~~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~~  217 (449)
T TIGR03305       139 GKAGLFGGAGVGKTVLLTEMIHNMV-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVGH  217 (449)
T ss_pred             CEEEeecCCCCChhHHHHHHHHHHH-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHHH
Confidence            4578999999999999999877422 222367778877654 4456666666653211110000 0 001      1112


Q ss_pred             HHHHHHHhcC---CCeEEEEeeC
Q 037564           74 KKSILRDYLT---NKKYFIVLDD   93 (93)
Q Consensus        74 l~~~l~~~L~---~kr~LlVlDD   93 (93)
                      ..-.+-++++   ++++|+++||
T Consensus       218 ~a~tiAEyfrd~~G~~VLl~~Ds  240 (449)
T TIGR03305       218 TALTMAEYFRDDEKQDVLLLIDN  240 (449)
T ss_pred             HHHHHHHHHHHhcCCceEEEecC
Confidence            2334566664   5899999997

A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.

>PRK00698 tmk thymidylate kinase; Validated

Probab=98.01  E-value=2.1e-05  Score=45.77  Aligned_cols=23  Identities=9%  Similarity=-0.172  Sum_probs=21.1

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +.+|+|.|+.|+||||+++.+.+
T Consensus         3 ~~~I~ieG~~gsGKsT~~~~L~~   25 (205)
T PRK00698          3 GMFITIEGIDGAGKSTQIELLKE   25 (205)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999887

>TIGR00041 DTMP_kinase thymidylate kinase

Probab=98.01  E-value=2.3e-05  Score=45.32  Aligned_cols=22  Identities=14%  Similarity=-0.188  Sum_probs=20.4

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+|+|.|..|+||||+++.+..
T Consensus         4 ~~IvieG~~GsGKsT~~~~L~~   25 (195)
T TIGR00041         4 MFIVIEGIDGAGKTTQANLLKK   25 (195)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999999987

Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.

>COG3903 Predicted ATPase [General function prediction only]

Probab=98.01  E-value=7.7e-06  Score=52.16  Aligned_cols=81  Identities=11%  Similarity=0.121  Sum_probs=53.8

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeE-EEEeCCCCCHHHHHHHHHHhhCCCCCCccccCCCHHHHHHHHHHh
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHA-WVRVSISYDFRMVLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDY   81 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~-wv~~~~~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~   81 (93)
                      +.++++|.+|+||||++-.+.+   +...|.... ++.+.+-.+...+.-.+...+.-..       .+-+.-...+...
T Consensus        15 RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~-------~~g~~~~~~~~~~   84 (414)
T COG3903          15 RLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHV-------QPGDSAVDTLVRR   84 (414)
T ss_pred             heeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhccccc-------ccchHHHHHHHHH
Confidence            6789999999999999998877   455676555 4455555555555555555555332       2333445556666


Q ss_pred             cCCCeEEEEeeC
Q 037564           82 LTNKKYFIVLDD   93 (93)
Q Consensus        82 L~~kr~LlVlDD   93 (93)
                      ..++|.++|+||
T Consensus        85 ~~~rr~llvldn   96 (414)
T COG3903          85 IGDRRALLVLDN   96 (414)
T ss_pred             HhhhhHHHHhcC
Confidence            677888888876

>TIGR00416 sms DNA repair protein RadA

Probab=98.01  E-value=7.8e-05  Score=48.69  Aligned_cols=83  Identities=7%  Similarity=0.005  Sum_probs=44.4

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHHHHhhCCCCCCccccC-CCHHHHHHHHHHh
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIG-EDYQLKKSILRDY   81 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~il~~l~~~~~~~~~~~-~~~~~l~~~l~~~   81 (93)
                      .++.|.|.+|+|||||+.++..  .....-..++|++...  +..++... ++.++.......-.. .+.+.+...+.+ 
T Consensus        95 svilI~G~pGsGKTTL~lq~a~--~~a~~g~kvlYvs~EE--s~~qi~~r-a~rlg~~~~~l~~~~e~~~~~I~~~i~~-  168 (454)
T TIGR00416        95 SLILIGGDPGIGKSTLLLQVAC--QLAKNQMKVLYVSGEE--SLQQIKMR-AIRLGLPEPNLYVLSETNWEQICANIEE-  168 (454)
T ss_pred             eEEEEEcCCCCCHHHHHHHHHH--HHHhcCCcEEEEECcC--CHHHHHHH-HHHcCCChHHeEEcCCCCHHHHHHHHHh-
Confidence            5788999999999999999877  3332223466776543  33333322 233332111100011 445555544433 


Q ss_pred             cCCCeEEEEeeC
Q 037564           82 LTNKKYFIVLDD   93 (93)
Q Consensus        82 L~~kr~LlVlDD   93 (93)
                        .+.-++|+|.
T Consensus       169 --~~~~~vVIDS  178 (454)
T TIGR00416       169 --ENPQACVIDS  178 (454)
T ss_pred             --cCCcEEEEec
Confidence              2344788883

The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).

>PRK14531 adenylate kinase; Provisional

Probab=98.00  E-value=6.2e-06  Score=47.52  Aligned_cols=24  Identities=13%  Similarity=-0.013  Sum_probs=21.1

Q ss_pred             CCceeeEEcCCCCcHHHHHHHHhc
Q 037564            1 FSGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         1 ~~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      |...|.+.|++|+||||+++.+..
T Consensus         1 ~~~~i~i~G~pGsGKsT~~~~la~   24 (183)
T PRK14531          1 MKQRLLFLGPPGAGKGTQAARLCA   24 (183)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            345789999999999999999877

>PRK05973 replicative DNA helicase; Provisional

Probab=98.00  E-value=2.8e-05  Score=46.69  Aligned_cols=48  Identities=8%  Similarity=-0.077  Sum_probs=31.8

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHHH
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDII   54 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~il   54 (93)
                      .++.|.|.+|+|||+++.++...  ....-..++|++...+  ..++...+.
T Consensus        65 sl~LIaG~PG~GKT~lalqfa~~--~a~~Ge~vlyfSlEes--~~~i~~R~~  112 (237)
T PRK05973         65 DLVLLGARPGHGKTLLGLELAVE--AMKSGRTGVFFTLEYT--EQDVRDRLR  112 (237)
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEEEeCC--HHHHHHHHH
Confidence            57889999999999999998763  2222334566665543  445555543

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.00  E-value=5.7e-06  Score=48.95  Aligned_cols=22  Identities=14%  Similarity=0.045  Sum_probs=19.9

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|.|++|+|||||.+.+..
T Consensus        29 evv~iiGpSGSGKSTlLRclN~   50 (240)
T COG1126          29 EVVVIIGPSGSGKSTLLRCLNG   50 (240)
T ss_pred             CEEEEECCCCCCHHHHHHHHHC
Confidence            4889999999999999998765

>PRK14738 gmk guanylate kinase; Provisional

Probab=98.00  E-value=6.7e-06  Score=48.29  Aligned_cols=23  Identities=22%  Similarity=0.020  Sum_probs=20.5

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ++.|.|.|++|+|||||++.+..
T Consensus        13 ~~~ivi~GpsG~GK~tl~~~L~~   35 (206)
T PRK14738         13 PLLVVISGPSGVGKDAVLARMRE   35 (206)
T ss_pred             CeEEEEECcCCCCHHHHHHHHHh
Confidence            46789999999999999999865

>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]

Probab=98.00  E-value=4.5e-06  Score=47.33  Aligned_cols=24  Identities=13%  Similarity=0.040  Sum_probs=21.5

Q ss_pred             CCceeeEEcCCCCcHHHHHHHHhc
Q 037564            1 FSGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         1 ~~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +..+++|+|+.++|||||..++..
T Consensus         1 m~~Il~ivG~k~SGKTTLie~lv~   24 (161)
T COG1763           1 MMKILGIVGYKNSGKTTLIEKLVR   24 (161)
T ss_pred             CCcEEEEEecCCCChhhHHHHHHH
Confidence            457999999999999999999866

>COG4240 Predicted kinase [General function prediction only]

Probab=98.00  E-value=4.3e-05  Score=45.85  Aligned_cols=79  Identities=13%  Similarity=-0.014  Sum_probs=46.9

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcCcccccCC-CeeEEEEeCCCCCHHHHHHHHHHhhCCCCCCccccC--CCHHHHHHHHHH
Q 037564            4 CKPILDSSSFDKTAFTADTYNNNHVKFYF-DCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIG--EDYQLKKSILRD   80 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~ll~~il~~l~~~~~~~~~~~--~~~~~l~~~l~~   80 (93)
                      +++|.|+.|+||||++..++.  .+.... ......++..-+-...-...++++...-.... +..  .+..-+...+..
T Consensus        52 i~gisGpQGSGKStls~~i~~--~L~~kg~ert~~lSLDDlYlthadrl~La~q~npllq~R-GlpGTHD~tlglnVLna  128 (300)
T COG4240          52 IVGISGPQGSGKSTLSALIVR--LLAAKGLERTATLSLDDLYLTHADRLRLARQVNPLLQTR-GLPGTHDPTLGLNVLNA  128 (300)
T ss_pred             EEEeecCCCCchhhHHHHHHH--HHHHhcccceEEeehhhhhcchHHHHHHHHhcCchhccc-CCCCCCchHHHHHHHHH
Confidence            789999999999999999988  555444 34555555544444444444555532111000 111  566666666666


Q ss_pred             hcCCC
Q 037564           81 YLTNK   85 (93)
Q Consensus        81 ~L~~k   85 (93)
                      ..+++
T Consensus       129 i~~g~  133 (300)
T COG4240         129 IARGG  133 (300)
T ss_pred             HhcCC
Confidence            65554

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=98.00  E-value=4.5e-06  Score=47.26  Aligned_cols=22  Identities=14%  Similarity=0.058  Sum_probs=20.3

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      +|+|.|++|+||||+|+.+.++
T Consensus         2 ~ItIsG~pGsG~TTva~~lAe~   23 (179)
T COG1102           2 VITISGLPGSGKTTVARELAEH   23 (179)
T ss_pred             EEEeccCCCCChhHHHHHHHHH
Confidence            6899999999999999999883

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=98.00  E-value=5.3e-06  Score=46.15  Aligned_cols=20  Identities=10%  Similarity=-0.077  Sum_probs=18.7

Q ss_pred             eeEEcCCCCcHHHHHHHHhc
Q 037564            5 KPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~   24 (93)
                      |.++|++|+||||+|+.+..
T Consensus         2 i~l~G~~GsGKstla~~la~   21 (154)
T cd00464           2 IVLIGMMGAGKTTVGRLLAK   21 (154)
T ss_pred             EEEEcCCCCCHHHHHHHHHH
Confidence            68999999999999999986

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>PLN02796 D-glycerate 3-kinase

Probab=97.99  E-value=2.5e-05  Score=49.24  Aligned_cols=21  Identities=14%  Similarity=0.004  Sum_probs=19.7

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +|+|.|.+|+|||||++.+..
T Consensus       102 iIGI~G~sGSGKSTLa~~L~~  122 (347)
T PLN02796        102 VIGISAPQGCGKTTLVFALVY  122 (347)
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            589999999999999999887

>PRK08472 fliI flagellum-specific ATP synthase; Validated

Probab=97.99  E-value=6.6e-05  Score=48.70  Aligned_cols=22  Identities=14%  Similarity=0.073  Sum_probs=20.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ..++|.|.+|+|||||++.+..
T Consensus       158 q~~~i~G~sG~GKStLl~~i~~  179 (434)
T PRK08472        158 QKLGIFAGSGVGKSTLMGMIVK  179 (434)
T ss_pred             CEEEEECCCCCCHHHHHHHHhh
Confidence            4789999999999999999987

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=97.99  E-value=5.3e-06  Score=47.36  Aligned_cols=20  Identities=15%  Similarity=0.096  Sum_probs=17.7

Q ss_pred             eeEEcCCCCcHHHHHHHHhc
Q 037564            5 KPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~   24 (93)
                      |.|.|.+|+|||||.+++++
T Consensus         2 i~iTG~pG~GKTTll~k~i~   21 (168)
T PF03266_consen    2 IFITGPPGVGKTTLLKKVIE   21 (168)
T ss_dssp             EEEES-TTSSHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHHH
Confidence            68999999999999999887

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=97.99  E-value=6.4e-06  Score=45.72  Aligned_cols=38  Identities=11%  Similarity=0.066  Sum_probs=26.3

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccc-cCCCeeEEEEeCC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVK-FYFDCHAWVRVSI   42 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~-~~f~~~~wv~~~~   42 (93)
                      .+|.|+|..++|||||++.+.+  .+. ..+...+......
T Consensus         1 pvv~VvG~~~sGKTTl~~~Li~--~l~~~g~~v~~ik~~~~   39 (140)
T PF03205_consen    1 PVVQVVGPKNSGKTTLIRKLIN--ELKRRGYRVAVIKHTDH   39 (140)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHH--HHHHTT--EEEEEE-ST
T ss_pred             CEEEEECCCCCCHHHHHHHHHH--HHhHcCCceEEEEEccC
Confidence            4789999999999999999998  444 3455554555443

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=97.99  E-value=5.6e-06  Score=46.31  Aligned_cols=21  Identities=10%  Similarity=-0.073  Sum_probs=19.2

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ++.|.|.+|+||||+|+.+..
T Consensus         1 ~i~i~G~~GsGKSTla~~L~~   21 (149)
T cd02027           1 VIWLTGLSGSGKSTIARALEE   21 (149)
T ss_pred             CEEEEcCCCCCHHHHHHHHHH
Confidence            578999999999999998877

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=97.99  E-value=5e-06  Score=50.40  Aligned_cols=21  Identities=10%  Similarity=-0.133  Sum_probs=18.7

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      -+.++|++|+||||+|+.+++
T Consensus        44 ~vll~GppGtGKTtlA~~ia~   64 (261)
T TIGR02881        44 HMIFKGNPGTGKTTVARILGK   64 (261)
T ss_pred             eEEEEcCCCCCHHHHHHHHHH
Confidence            467899999999999999876

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI

Probab=97.99  E-value=6.3e-05  Score=48.57  Aligned_cols=87  Identities=14%  Similarity=0.163  Sum_probs=45.9

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCC-CHHHHHHHHHHhhCCCCCCcc--ccC-CCHH-----H
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISY-DFRMVLDDIIKSVMPPSRVSV--IIG-EDYQ-----L   73 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~ll~~il~~l~~~~~~~~--~~~-~~~~-----~   73 (93)
                      ..++|.|.+|+|||||++.+...  ...  +......+.+.. ...++....+.+-......-.  ..+ ....     .
T Consensus       138 qri~I~G~sG~GKTtLl~~i~~~--~~~--~~gvi~~~Ger~~ev~e~~~~~l~~~~~~~~v~v~~tsd~~~~~r~~~~~  213 (413)
T TIGR03497       138 QRVGIFAGSGVGKSTLLGMIARN--AKA--DINVIALIGERGREVRDFIEKDLGEEGLKRSVVVVATSDQPALMRLKAAF  213 (413)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC--CCC--CeEEEEEEccchHHHHHHHHHHhcccccceEEEEEECCCCCHHHHHHHHH
Confidence            57899999999999999988873  222  223333344332 444455444432111100000  000 1111     2


Q ss_pred             HHHHHHHhc--CCCeEEEEeeC
Q 037564           74 KKSILRDYL--TNKKYFIVLDD   93 (93)
Q Consensus        74 l~~~l~~~L--~~kr~LlVlDD   93 (93)
                      ..-.+-+++  +++++|+++||
T Consensus       214 ~a~tiAEyfr~~G~~Vll~~Ds  235 (413)
T TIGR03497       214 TATAIAEYFRDQGKDVLLMMDS  235 (413)
T ss_pred             HHHHHHHHHHHCCCCEEEEEcC
Confidence            223344555  57899999997

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]

Probab=97.99  E-value=0.00014  Score=44.09  Aligned_cols=81  Identities=14%  Similarity=0.174  Sum_probs=49.0

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeC-CCCCHHHHHHHHHHhhCCCCCCccccCCCHHHHHHH----
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVS-ISYDFRMVLDDIIKSVMPPSRVSVIIGEDYQLKKSI----   77 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~-~~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~~----   77 (93)
                      +++.++|.-|+|||.+++.+..  ... . +.++-+.+. +..+...+...+...+..+..      .+.......    
T Consensus        52 g~~~vtGevGsGKTv~~Ral~~--s~~-~-d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~------~~~~~~~e~~~~~  121 (269)
T COG3267          52 GILAVTGEVGSGKTVLRRALLA--SLN-E-DQVAVVVIDKPTLSDATLLEAIVADLESQPK------VNVNAVLEQIDRE  121 (269)
T ss_pred             ceEEEEecCCCchhHHHHHHHH--hcC-C-CceEEEEecCcchhHHHHHHHHHHHhccCcc------chhHHHHHHHHHH
Confidence            4889999999999999995443  111 1 112224444 445778888888888875222      333433333    


Q ss_pred             HHHhc-CCCe-EEEEeeC
Q 037564           78 LRDYL-TNKK-YFIVLDD   93 (93)
Q Consensus        78 l~~~L-~~kr-~LlVlDD   93 (93)
                      +.... +++| +.++.||
T Consensus       122 L~al~~~g~r~v~l~vdE  139 (269)
T COG3267         122 LAALVKKGKRPVVLMVDE  139 (269)
T ss_pred             HHHHHHhCCCCeEEeehh
Confidence            33333 5666 7777764

>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B

Probab=97.99  E-value=1.3e-05  Score=49.84  Aligned_cols=23  Identities=13%  Similarity=-0.127  Sum_probs=19.1

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .|++.+.|-||+||||+|....-
T Consensus         1 ~r~~~~~GKGGVGKTT~aaA~A~   23 (305)
T PF02374_consen    1 MRILFFGGKGGVGKTTVAAALAL   23 (305)
T ss_dssp             -SEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEecCCCCCcHHHHHHHHH
Confidence            37899999999999999876554

...

>PLN03025 replication factor C subunit; Provisional

Probab=97.98  E-value=4.8e-05  Score=47.45  Aligned_cols=20  Identities=10%  Similarity=-0.092  Sum_probs=18.3

Q ss_pred             eeEEcCCCCcHHHHHHHHhc
Q 037564            5 KPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +.++|++|+||||+|..+++
T Consensus        37 lll~Gp~G~GKTtla~~la~   56 (319)
T PLN03025         37 LILSGPPGTGKTTSILALAH   56 (319)
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            56899999999999999887

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=97.98  E-value=4.4e-06  Score=56.48  Aligned_cols=28  Identities=11%  Similarity=0.069  Sum_probs=24.5

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYF   32 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f   32 (93)
                      .+++++|++|+|||+|++.++.  .+...|
T Consensus       351 pILcLVGPPGVGKTSLgkSIA~--al~Rkf  378 (782)
T COG0466         351 PILCLVGPPGVGKTSLGKSIAK--ALGRKF  378 (782)
T ss_pred             cEEEEECCCCCCchhHHHHHHH--HhCCCE
Confidence            5899999999999999999998  666555

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=97.98  E-value=6.9e-06  Score=43.76  Aligned_cols=22  Identities=18%  Similarity=0.211  Sum_probs=19.7

Q ss_pred             eeEEcCCCCcHHHHHHHHhcCc
Q 037564            5 KPILDSSSFDKTAFTADTYNNN   26 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~~~   26 (93)
                      |.|.|.+|+|||||.+.+....
T Consensus         2 I~V~G~~g~GKTsLi~~l~~~~   23 (119)
T PF08477_consen    2 IVVLGDSGVGKTSLIRRLCGGE   23 (119)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEECcCCCCHHHHHHHHhcCC
Confidence            6899999999999999998753

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>PLN02924 thymidylate kinase

Probab=97.98  E-value=3.4e-05  Score=45.88  Aligned_cols=23  Identities=9%  Similarity=-0.074  Sum_probs=21.1

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +..|+|.|..|+||||+++.+..
T Consensus        16 g~~IviEGiDGsGKsTq~~~L~~   38 (220)
T PLN02924         16 GALIVLEGLDRSGKSTQCAKLVS   38 (220)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999988

>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional

Probab=97.98  E-value=6.8e-06  Score=52.73  Aligned_cols=24  Identities=25%  Similarity=0.267  Sum_probs=21.8

Q ss_pred             CCceeeEEcCCCCcHHHHHHHHhc
Q 037564            1 FSGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         1 ~~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +.+.|+|.|.+|+|||||++.+..
T Consensus       218 ~~~~IvI~G~~gsGKTTL~~~La~  241 (399)
T PRK08099        218 FVRTVAILGGESSGKSTLVNKLAN  241 (399)
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHH
Confidence            457899999999999999999887

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=97.97  E-value=3.7e-05  Score=45.97  Aligned_cols=47  Identities=9%  Similarity=0.008  Sum_probs=29.9

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHH
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDI   53 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i   53 (93)
                      .++.|.|++|+||||+|.+++.. -.+.. ..++|++  ...+..++++++
T Consensus        25 ~~~~i~G~~G~GKTtl~~~~~~~-~~~~g-~~~~yi~--~e~~~~~~~~~~   71 (230)
T PRK08533         25 SLILIEGDESTGKSILSQRLAYG-FLQNG-YSVSYVS--TQLTTTEFIKQM   71 (230)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH-HHhCC-CcEEEEe--CCCCHHHHHHHH
Confidence            57899999999999998776652 11222 3345555  333445666665

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.97  E-value=3e-06  Score=55.77  Aligned_cols=23  Identities=9%  Similarity=-0.152  Sum_probs=19.7

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      ..+.++|++|+||||+|+.+++.
T Consensus        37 ha~Lf~GppGtGKTTlA~~lA~~   59 (504)
T PRK14963         37 HAYLFSGPRGVGKTTTARLIAMA   59 (504)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            34678999999999999998873

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.97  E-value=8.7e-06  Score=44.52  Aligned_cols=24  Identities=8%  Similarity=0.019  Sum_probs=21.3

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhcC
Q 037564            2 SGCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      ..+++|+|..|+|||||.+.++..
T Consensus        11 g~~~~i~G~nGsGKStLl~~l~g~   34 (137)
T PF00005_consen   11 GEIVAIVGPNGSGKSTLLKALAGL   34 (137)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHTTS
T ss_pred             CCEEEEEccCCCccccceeeeccc
Confidence            357899999999999999998874

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=97.97  E-value=2.1e-05  Score=53.88  Aligned_cols=22  Identities=14%  Similarity=0.046  Sum_probs=20.0

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +-+.++|++|+|||+||+.+++
T Consensus       213 ~giLL~GppGtGKT~laraia~  234 (733)
T TIGR01243       213 KGVLLYGPPGTGKTLLAKAVAN  234 (733)
T ss_pred             ceEEEECCCCCChHHHHHHHHH
Confidence            4578999999999999999988

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase

Probab=97.97  E-value=0.00018  Score=46.69  Aligned_cols=87  Identities=10%  Similarity=0.151  Sum_probs=47.6

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCC-CCCHHHHHHHHHHhhCCCCCCcc-cc-CCCHH------H
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSI-SYDFRMVLDDIIKSVMPPSRVSV-II-GEDYQ------L   73 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~ll~~il~~l~~~~~~~~-~~-~~~~~------~   73 (93)
                      ..++|.|.+|+|||||.+.+...  ..  -+...+..+.. ..+..++..+...........-+ .. +.+..      .
T Consensus       146 q~~~I~G~sG~GKStLl~~I~~~--~~--~~~~vi~~iG~~~~ev~~~~~~~~~~~~~~~tvvv~~~s~~p~~~r~~~~~  221 (422)
T TIGR02546       146 QRIGIFAGAGVGKSTLLGMIARG--AS--ADVNVIALIGERGREVREFIEHHLGEEGRKRSVLVVSTSDRPSLERLKAAY  221 (422)
T ss_pred             CEEEEECCCCCChHHHHHHHhCC--CC--CCEEEEEEEccCCcCHHHHHHHHhccccccceEEEeccccCCHHHHHHHHH
Confidence            46899999999999999998883  22  23344444443 44555555554433211110000 00 01111      1


Q ss_pred             HHHHHHHhc--CCCeEEEEeeC
Q 037564           74 KKSILRDYL--TNKKYFIVLDD   93 (93)
Q Consensus        74 l~~~l~~~L--~~kr~LlVlDD   93 (93)
                      ..-.+.+++  +++++|+++||
T Consensus       222 ~a~~~AE~f~~~g~~Vl~~~Ds  243 (422)
T TIGR02546       222 TATAIAEYFRDQGKRVLLMMDS  243 (422)
T ss_pred             HHHHHHHHHHHCCCcEEEEEeC
Confidence            223345555  56899999997

>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated

Probab=97.97  E-value=0.00012  Score=41.99  Aligned_cols=22  Identities=9%  Similarity=-0.017  Sum_probs=19.9

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .++.|.|.+|+|||++|..+..
T Consensus         2 ~~ili~G~~~sGKS~~a~~l~~   23 (170)
T PRK05800          2 MLILVTGGARSGKSRFAERLAA   23 (170)
T ss_pred             CEEEEECCCCccHHHHHHHHHH
Confidence            3688999999999999999887

>PRK06620 hypothetical protein; Validated

Probab=97.96  E-value=8.9e-06  Score=48.11  Aligned_cols=23  Identities=30%  Similarity=-0.093  Sum_probs=20.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      +.+.++|++|+|||+|++.+++.
T Consensus        45 ~~l~l~Gp~G~GKThLl~a~~~~   67 (214)
T PRK06620         45 FTLLIKGPSSSGKTYLTKIWQNL   67 (214)
T ss_pred             ceEEEECCCCCCHHHHHHHHHhc
Confidence            45889999999999999988774

>PRK04182 cytidylate kinase; Provisional

Probab=97.96  E-value=7.5e-06  Score=46.64  Aligned_cols=21  Identities=14%  Similarity=-0.042  Sum_probs=19.9

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +|+|.|++|+||||+|+.+..
T Consensus         2 ~I~i~G~~GsGKstia~~la~   22 (180)
T PRK04182          2 IITISGPPGSGKTTVARLLAE   22 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999987

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=97.96  E-value=8.6e-06  Score=43.22  Aligned_cols=21  Identities=19%  Similarity=0.090  Sum_probs=19.0

Q ss_pred             ceeeEEcCCCCcHHHHHHHHh
Q 037564            3 GCKPILDSSSFDKTAFTADTY   23 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~   23 (93)
                      ..++|.|++|+|||||++.+.
T Consensus        16 e~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          16 VGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EEEEEEcCCCCCHHHHHHHhh
Confidence            478999999999999999976

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=97.95  E-value=8.2e-06  Score=46.68  Aligned_cols=22  Identities=5%  Similarity=-0.059  Sum_probs=20.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ..|.+.|++|+||||+++.+..
T Consensus         5 ~~I~liG~~GaGKStl~~~La~   26 (172)
T PRK05057          5 RNIFLVGPMGAGKSTIGRQLAQ   26 (172)
T ss_pred             CEEEEECCCCcCHHHHHHHHHH
Confidence            4689999999999999999987

>TIGR00602 rad24 checkpoint protein rad24

Probab=97.95  E-value=9.7e-06  Score=54.66  Aligned_cols=22  Identities=14%  Similarity=-0.080  Sum_probs=20.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +++.++|++|+||||+++.++.
T Consensus       111 ~illL~GP~GsGKTTl~~~la~  132 (637)
T TIGR00602       111 RILLITGPSGCGKSTTIKILSK  132 (637)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999987

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=97.95  E-value=6e-06  Score=46.61  Aligned_cols=20  Identities=20%  Similarity=0.059  Sum_probs=16.9

Q ss_pred             eeEEcCCCCcHHHHHHHHhc
Q 037564            5 KPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~   24 (93)
                      |+|.|..|+|||||++.+..
T Consensus         2 I~i~G~~stGKTTL~~~L~~   21 (163)
T PF13521_consen    2 IVITGGPSTGKTTLIEALAA   21 (163)
T ss_dssp             EEEE--TTSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999987

>smart00763 AAA_PrkA PrkA AAA domain

Probab=97.95  E-value=7e-06  Score=51.86  Aligned_cols=22  Identities=9%  Similarity=-0.061  Sum_probs=20.6

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +++.++|++|+||||||+.+.+
T Consensus        79 ~il~L~GPPGsGKStla~~La~  100 (361)
T smart00763       79 QILYLLGPVGGGKSSLVECLKR  100 (361)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999999988

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=97.95  E-value=6.5e-06  Score=49.55  Aligned_cols=21  Identities=10%  Similarity=0.124  Sum_probs=19.1

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +|.++|++|+||||+|+.+..
T Consensus         1 LIvl~G~pGSGKST~a~~La~   21 (249)
T TIGR03574         1 LIILTGLPGVGKSTFSKELAK   21 (249)
T ss_pred             CEEEEcCCCCCHHHHHHHHHH
Confidence            478999999999999999876

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>PRK08727 hypothetical protein; Validated

Probab=97.95  E-value=1.1e-05  Score=48.33  Aligned_cols=36  Identities=8%  Similarity=-0.018  Sum_probs=26.3

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeC
Q 037564            4 CKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVS   41 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~   41 (93)
                      .+.++|.+|+|||.|+..+++  +.........|++..
T Consensus        43 ~l~l~G~~G~GKThL~~a~~~--~~~~~~~~~~y~~~~   78 (233)
T PRK08727         43 WLYLSGPAGTGKTHLALALCA--AAEQAGRSSAYLPLQ   78 (233)
T ss_pred             eEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEEeHH
Confidence            588999999999999999987  443333344566543

>PRK14527 adenylate kinase; Provisional

Probab=97.95  E-value=8.4e-06  Score=47.23  Aligned_cols=23  Identities=9%  Similarity=-0.038  Sum_probs=20.6

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +.+|.+.|++|+||||+|+.+..
T Consensus         6 ~~~i~i~G~pGsGKsT~a~~La~   28 (191)
T PRK14527          6 NKVVIFLGPPGAGKGTQAERLAQ   28 (191)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999875

>TIGR01026 fliI_yscN ATPase FliI/YscN family

Probab=97.94  E-value=7.6e-05  Score=48.56  Aligned_cols=22  Identities=14%  Similarity=0.048  Sum_probs=20.1

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ..++|.|.+|+|||||.+.+..
T Consensus       164 q~~~I~G~sG~GKStLl~~I~~  185 (440)
T TIGR01026       164 QRIGIFAGSGVGKSTLLGMIAR  185 (440)
T ss_pred             cEEEEECCCCCCHHHHHHHHhC
Confidence            4689999999999999998887

This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=97.94  E-value=2.7e-05  Score=47.34  Aligned_cols=22  Identities=9%  Similarity=-0.038  Sum_probs=19.6

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +-+.+.|++|+|||+||+.+..
T Consensus        22 ~~vLL~G~~GtGKT~lA~~la~   43 (262)
T TIGR02640        22 YPVHLRGPAGTGKTTLAMHVAR   43 (262)
T ss_pred             CeEEEEcCCCCCHHHHHHHHHH
Confidence            4577899999999999999987

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=97.94  E-value=0.00035  Score=38.84  Aligned_cols=23  Identities=4%  Similarity=-0.028  Sum_probs=20.8

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .+++|.|.+|.|||||++.+...
T Consensus        27 e~~~i~G~nGsGKStLl~~l~G~   49 (144)
T cd03221          27 DRIGLVGRNGAGKSTLLKLIAGE   49 (144)
T ss_pred             CEEEEECCCCCCHHHHHHHHcCC
Confidence            47899999999999999998874

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=97.93  E-value=9.9e-06  Score=46.54  Aligned_cols=22  Identities=9%  Similarity=0.019  Sum_probs=20.4

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .++.+.|++|+||||+++.+..
T Consensus         4 e~i~l~G~sGsGKSTl~~~la~   25 (176)
T PRK09825          4 ESYILMGVSGSGKSLIGSKIAA   25 (176)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999999887

>PRK08356 hypothetical protein; Provisional

Probab=97.93  E-value=9.4e-06  Score=47.23  Aligned_cols=21  Identities=10%  Similarity=-0.132  Sum_probs=18.9

Q ss_pred             ceeeEEcCCCCcHHHHHHHHh
Q 037564            3 GCKPILDSSSFDKTAFTADTY   23 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~   23 (93)
                      .+|+|+|++|+||||+|+.+.
T Consensus         6 ~~i~~~G~~gsGK~t~a~~l~   26 (195)
T PRK08356          6 MIVGVVGKIAAGKTTVAKFFE   26 (195)
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            468999999999999999983

>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family

Probab=97.93  E-value=4e-05  Score=46.56  Aligned_cols=38  Identities=13%  Similarity=-0.063  Sum_probs=28.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSI   42 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~   42 (93)
                      .++.|.|++|+|||++|.+++..  ....=..++|++...
T Consensus        37 s~~lI~G~pGtGKT~l~~qf~~~--~a~~Ge~vlyis~Ee   74 (259)
T TIGR03878        37 SVINITGVSDTGKSLMVEQFAVT--QASRGNPVLFVTVES   74 (259)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHH--HHhCCCcEEEEEecC
Confidence            57889999999999999997662  222234677887764

This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.

>CHL00195 ycf46 Ycf46; Provisional

Probab=97.93  E-value=3.9e-05  Score=50.47  Aligned_cols=22  Identities=9%  Similarity=-0.055  Sum_probs=20.0

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +-|.++|++|+|||.+|+.+.+
T Consensus       260 kGILL~GPpGTGKTllAkaiA~  281 (489)
T CHL00195        260 RGLLLVGIQGTGKSLTAKAIAN  281 (489)
T ss_pred             ceEEEECCCCCcHHHHHHHHHH
Confidence            4478999999999999999988

>PRK06820 type III secretion system ATPase; Validated

Probab=97.93  E-value=0.00037  Score=45.39  Aligned_cols=22  Identities=9%  Similarity=0.048  Sum_probs=19.8

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ..++|.|.+|+|||||++.+..
T Consensus       164 qri~I~G~sG~GKStLl~~I~~  185 (440)
T PRK06820        164 QRIGIFAAAGVGKSTLLGMLCA  185 (440)
T ss_pred             CEEEEECCCCCChHHHHHHHhc
Confidence            4689999999999999998877

>PLN02200 adenylate kinase family protein

Probab=97.93  E-value=8.9e-06  Score=48.73  Aligned_cols=22  Identities=9%  Similarity=-0.073  Sum_probs=20.0

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+|.|.|++|+||||+|+.+..
T Consensus        44 ~ii~I~G~PGSGKsT~a~~La~   65 (234)
T PLN02200         44 FITFVLGGPGSGKGTQCEKIVE   65 (234)
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999998877

>TIGR02173 cyt_kin_arch cytidylate kinase, putative

Probab=97.93  E-value=9.1e-06  Score=45.97  Aligned_cols=21  Identities=14%  Similarity=-0.035  Sum_probs=19.8

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +|+|.|++|+||||+|+.+.+
T Consensus         2 iI~i~G~~GSGKstia~~la~   22 (171)
T TIGR02173         2 IITISGPPGSGKTTVAKILAE   22 (171)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            789999999999999999977

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.

>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]

Probab=97.92  E-value=1.1e-05  Score=46.17  Aligned_cols=29  Identities=7%  Similarity=0.011  Sum_probs=23.0

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhcCcccccCC
Q 037564            2 SGCKPILDSSSFDKTAFTADTYNNNHVKFYF   32 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f   32 (93)
                      ++-|.++||.|+||||+.+.+..  .+.-.|
T Consensus         2 ~~~IvLiG~mGaGKSTIGr~LAk--~L~~~F   30 (172)
T COG0703           2 NMNIVLIGFMGAGKSTIGRALAK--ALNLPF   30 (172)
T ss_pred             CccEEEEcCCCCCHhHHHHHHHH--HcCCCc
Confidence            35688999999999999999987  444344

>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]

Probab=97.92  E-value=5e-05  Score=48.83  Aligned_cols=39  Identities=13%  Similarity=-0.118  Sum_probs=29.7

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCC
Q 037564            2 SGCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSI   42 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~   42 (93)
                      ...+.|||..|.|||.|++.+.+  ...........++++.
T Consensus       113 ~nplfi~G~~GlGKTHLl~Aign--~~~~~~~~a~v~y~~s  151 (408)
T COG0593         113 YNPLFIYGGVGLGKTHLLQAIGN--EALANGPNARVVYLTS  151 (408)
T ss_pred             CCcEEEECCCCCCHHHHHHHHHH--HHHhhCCCceEEeccH
Confidence            35689999999999999999999  6665555445555544

>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A

Probab=97.92  E-value=1.7e-05  Score=46.64  Aligned_cols=50  Identities=14%  Similarity=0.016  Sum_probs=29.6

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcCccc-------ccCCCeeEEEEeCCCCCHHHHHHHHHH
Q 037564            4 CKPILDSSSFDKTAFTADTYNNNHV-------KFYFDCHAWVRVSISYDFRMVLDDIIK   55 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~~~~-------~~~f~~~~wv~~~~~~~~~~ll~~il~   55 (93)
                      +..|+|++|+|||+++..+..  .+       ...-...+-+....+.....++..+.+
T Consensus        19 ~~~i~GpPGTGKT~~l~~~i~--~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~   75 (236)
T PF13086_consen   19 ITLIQGPPGTGKTTTLASIIA--QLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK   75 (236)
T ss_dssp             -EEEE-STTSSHHHHHHHHHH--HH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred             CEEEECCCCCChHHHHHHHHH--HhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence            478999999999986666555  22       122334444454555555666666665

>PRK07721 fliI flagellum-specific ATP synthase; Validated

Probab=97.92  E-value=0.00011  Score=47.85  Aligned_cols=22  Identities=14%  Similarity=0.064  Sum_probs=20.1

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ..++|.|.+|+|||||++.+..
T Consensus       159 q~i~I~G~sG~GKStLl~~I~~  180 (438)
T PRK07721        159 QRVGIFAGSGVGKSTLMGMIAR  180 (438)
T ss_pred             cEEEEECCCCCCHHHHHHHHhc
Confidence            5789999999999999998887

>TIGR00678 holB DNA polymerase III, delta' subunit

Probab=97.91  E-value=0.00015  Score=41.84  Aligned_cols=23  Identities=4%  Similarity=-0.038  Sum_probs=19.9

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +..+.++|+.|+|||++|+.+..
T Consensus        14 ~~~~L~~G~~G~gkt~~a~~~~~   36 (188)
T TIGR00678        14 AHAYLFAGPEGVGKELLALALAK   36 (188)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35678899999999999998876

At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.

>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]

Probab=97.91  E-value=8.2e-06  Score=46.88  Aligned_cols=26  Identities=8%  Similarity=-0.112  Sum_probs=22.0

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCccccc
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKF   30 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~   30 (93)
                      .+|.+.|.+|+||||+|..+..  ++..
T Consensus        24 ~viW~TGLSGsGKSTiA~ale~--~L~~   49 (197)
T COG0529          24 AVIWFTGLSGSGKSTIANALEE--KLFA   49 (197)
T ss_pred             eEEEeecCCCCCHHHHHHHHHH--HHHH
Confidence            4788889999999999999988  5443

>PRK07196 fliI flagellum-specific ATP synthase; Validated

Probab=97.90  E-value=9.1e-05  Score=48.07  Aligned_cols=22  Identities=9%  Similarity=0.045  Sum_probs=20.1

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ..++|.|.+|+|||||++.+..
T Consensus       156 Q~igI~G~sGaGKSTLl~~I~g  177 (434)
T PRK07196        156 QRVGLMAGSGVGKSVLLGMITR  177 (434)
T ss_pred             eEEEEECCCCCCccHHHHHHhc
Confidence            5789999999999999998877

>PRK14532 adenylate kinase; Provisional

Probab=97.90  E-value=9.9e-06  Score=46.71  Aligned_cols=20  Identities=5%  Similarity=-0.024  Sum_probs=18.6

Q ss_pred             eeEEcCCCCcHHHHHHHHhc
Q 037564            5 KPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~   24 (93)
                      |.+.|++|+||||+|+.+..
T Consensus         3 i~~~G~pGsGKsT~a~~la~   22 (188)
T PRK14532          3 LILFGPPAAGKGTQAKRLVE   22 (188)
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            77899999999999999987

>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB

Probab=97.90  E-value=1e-05  Score=45.63  Aligned_cols=21  Identities=14%  Similarity=0.131  Sum_probs=19.6

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +++|+|+.|+|||||+..+..
T Consensus         1 vi~i~G~~gsGKTtl~~~l~~   21 (155)
T TIGR00176         1 VLQIVGPKNSGKTTLIERLVK   21 (155)
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999999988

This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.

>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional

Probab=97.90  E-value=1.4e-05  Score=48.93  Aligned_cols=28  Identities=11%  Similarity=-0.017  Sum_probs=23.7

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYF   32 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f   32 (93)
                      ++|+|+|.+|+|||||+.++..  .+++..
T Consensus         2 ~~i~i~G~~gSGKTTLi~~Li~--~L~~~G   29 (274)
T PRK14493          2 KVLSIVGYKATGKTTLVERLVD--RLSGRG   29 (274)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH--HHHhCC
Confidence            5799999999999999999988  555543

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=97.90  E-value=9.9e-06  Score=46.74  Aligned_cols=20  Identities=10%  Similarity=-0.019  Sum_probs=18.8

Q ss_pred             eeEEcCCCCcHHHHHHHHhc
Q 037564            5 KPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~   24 (93)
                      |.|.|++|+||||+|+.+..
T Consensus         2 I~i~G~pGsGKst~a~~La~   21 (194)
T cd01428           2 ILLLGPPGSGKGTQAERLAK   21 (194)
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999887

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=97.90  E-value=1.3e-05  Score=47.00  Aligned_cols=23  Identities=9%  Similarity=-0.064  Sum_probs=20.7

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .+++|.|++|+|||||++.++..
T Consensus        28 ~~~~l~G~nGsGKSTLl~~l~G~   50 (211)
T cd03225          28 EFVLIVGPNGSGKSTLLRLLNGL   50 (211)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcC
Confidence            47899999999999999998863

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=97.90  E-value=1.3e-05  Score=47.21  Aligned_cols=23  Identities=13%  Similarity=-0.038  Sum_probs=20.7

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .+++|.|++|+|||||++.++.-
T Consensus        31 ~~~~l~G~nGsGKSTLl~~i~Gl   53 (218)
T cd03255          31 EFVAIVGPSGSGKSTLLNILGGL   53 (218)
T ss_pred             CEEEEEcCCCCCHHHHHHHHhCC
Confidence            47899999999999999998774

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=97.89  E-value=3.6e-05  Score=52.51  Aligned_cols=50  Identities=14%  Similarity=0.066  Sum_probs=36.4

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHHHHhh
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSV   57 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~il~~l   57 (93)
                      ++..++|++|.||||||..++++.    .|. ++-++.|...+...+-..|...+
T Consensus       327 KilLL~GppGlGKTTLAHViAkqa----GYs-VvEINASDeRt~~~v~~kI~~av  376 (877)
T KOG1969|consen  327 KILLLCGPPGLGKTTLAHVIAKQA----GYS-VVEINASDERTAPMVKEKIENAV  376 (877)
T ss_pred             ceEEeecCCCCChhHHHHHHHHhc----Cce-EEEecccccccHHHHHHHHHHHH
Confidence            578899999999999999998832    232 34567777777766666655544

>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit

Probab=97.89  E-value=6.6e-05  Score=49.00  Aligned_cols=91  Identities=13%  Similarity=0.128  Sum_probs=51.5

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCC--CeeEEEEeCC-CCCHHHHHHHHHHhhCCCCCCcc-c-cC-CCH-----
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYF--DCHAWVRVSI-SYDFRMVLDDIIKSVMPPSRVSV-I-IG-EDY-----   71 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f--~~~~wv~~~~-~~~~~~ll~~il~~l~~~~~~~~-~-~~-~~~-----   71 (93)
                      .-++|.|.+|+|||+|+..+.+.......+  ..++++.+.+ .....++++.+...-......-. . .+ ...     
T Consensus       142 QR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~~a  221 (458)
T TIGR01041       142 QKLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERIVT  221 (458)
T ss_pred             CEEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHHH
Confidence            457899999999999999988843322111  1456666654 44556666666643221111000 0 00 111     


Q ss_pred             HHHHHHHHHhcC---CCeEEEEeeC
Q 037564           72 QLKKSILRDYLT---NKKYFIVLDD   93 (93)
Q Consensus        72 ~~l~~~l~~~L~---~kr~LlVlDD   93 (93)
                      --..-.+-++++   ++++|+++||
T Consensus       222 ~~~a~tiAEyfr~d~G~~VLli~Ds  246 (458)
T TIGR01041       222 PRMALTAAEYLAFEKDMHVLVILTD  246 (458)
T ss_pred             HHHHHHHHHHHHHccCCcEEEEEcC
Confidence            112233566664   6789999997

Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=97.89  E-value=5.9e-05  Score=51.80  Aligned_cols=20  Identities=15%  Similarity=0.107  Sum_probs=18.3

Q ss_pred             eeEEcCCCCcHHHHHHHHhc
Q 037564            5 KPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +.++|++|+|||++|+.+++
T Consensus       206 ~lL~G~pG~GKT~l~~~la~  225 (731)
T TIGR02639       206 PLLVGEPGVGKTAIAEGLAL  225 (731)
T ss_pred             eEEECCCCCCHHHHHHHHHH
Confidence            56899999999999999887

>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional

Probab=97.89  E-value=2.6e-05  Score=47.40  Aligned_cols=24  Identities=4%  Similarity=0.087  Sum_probs=21.2

Q ss_pred             CCceeeEEcCCCCcHHHHHHHHhc
Q 037564            1 FSGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         1 ~~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      |+++|+|.|-||+||||++..+..
T Consensus         1 m~~iIav~~KGGVGKTT~~~nLA~   24 (270)
T PRK13185          1 MALVLAVYGKGGIGKSTTSSNLSA   24 (270)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999998887776

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=97.89  E-value=1.4e-05  Score=47.08  Aligned_cols=23  Identities=13%  Similarity=0.021  Sum_probs=20.7

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .+++|.|++|+|||||++.+..-
T Consensus        30 e~~~i~G~nGsGKSTLl~~l~Gl   52 (216)
T TIGR00960        30 EMVFLVGHSGAGKSTFLKLILGI   52 (216)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            47899999999999999998873

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=97.89  E-value=1.5e-05  Score=45.87  Aligned_cols=22  Identities=9%  Similarity=-0.002  Sum_probs=19.8

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|.|++|+|||||.+.++.
T Consensus        22 ~~~~l~G~nG~GKSTLl~~il~   43 (176)
T cd03238          22 VLVVVTGVSGSGKSTLVNEGLY   43 (176)
T ss_pred             CEEEEECCCCCCHHHHHHHHhh
Confidence            5789999999999999998864

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>TIGR01039 atpD ATP synthase, F1 beta subunit

Probab=97.88  E-value=0.00015  Score=47.40  Aligned_cols=90  Identities=13%  Similarity=0.138  Sum_probs=51.6

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCC-CCCHHHHHHHHHHhhCCCCCCcc-c-cCCC-HH-----H
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSI-SYDFRMVLDDIIKSVMPPSRVSV-I-IGED-YQ-----L   73 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~ll~~il~~l~~~~~~~~-~-~~~~-~~-----~   73 (93)
                      .-++|.|.+|+|||||+..+...... ++=..++++-+.+ .....++++++...-......-+ . .+.+ ..     .
T Consensus       144 Qr~~If~~~G~GKt~L~~~~~~~~~~-~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~~  222 (461)
T TIGR01039       144 GKIGLFGGAGVGKTVLIQELINNIAK-EHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRVAL  222 (461)
T ss_pred             CEEEeecCCCCChHHHHHHHHHHHHh-cCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHH
Confidence            45789999999999999988763111 1123566776754 44557777777543211110000 0 0011 11     1


Q ss_pred             HHHHHHHhc---CCCeEEEEeeC
Q 037564           74 KKSILRDYL---TNKKYFIVLDD   93 (93)
Q Consensus        74 l~~~l~~~L---~~kr~LlVlDD   93 (93)
                      ..-.+-+++   +++++|+++||
T Consensus       223 ~a~tiAEyfrd~~G~~VLll~Ds  245 (461)
T TIGR01039       223 TGLTMAEYFRDEQGQDVLLFIDN  245 (461)
T ss_pred             HHHHHHHHHHHhcCCeeEEEecc
Confidence            223456666   45899999997

The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.

>PRK09087 hypothetical protein; Validated

Probab=97.88  E-value=1.4e-05  Score=47.72  Aligned_cols=22  Identities=9%  Similarity=-0.086  Sum_probs=19.9

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +.+.|+|++|+|||+|++.++.
T Consensus        45 ~~l~l~G~~GsGKThLl~~~~~   66 (226)
T PRK09087         45 PVVVLAGPVGSGKTHLASIWRE   66 (226)
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4589999999999999999886

>PRK13233 nifH nitrogenase reductase; Reviewed

Probab=97.88  E-value=1.3e-05  Score=48.78  Aligned_cols=24  Identities=17%  Similarity=0.158  Sum_probs=21.0

Q ss_pred             CCceeeEEcCCCCcHHHHHHHHhc
Q 037564            1 FSGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         1 ~~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      |+++|+|.|-||+||||+|..+..
T Consensus         1 M~~vIav~~KGGVGKTT~a~nLA~   24 (275)
T PRK13233          1 MTRKIAIYGKGGIGKSTTTQNTAA   24 (275)
T ss_pred             CceEEEEEcCCCCcHHHHHHHHHH
Confidence            578999999999999999887666

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.88  E-value=0.00021  Score=43.81  Aligned_cols=22  Identities=14%  Similarity=0.066  Sum_probs=19.7

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ..++++|.+|+||||++..+..
T Consensus        76 ~~i~~~G~~g~GKTtl~~~l~~   97 (270)
T PRK06731         76 QTIALIGPTGVGKTTTLAKMAW   97 (270)
T ss_pred             CEEEEECCCCCcHHHHHHHHHH
Confidence            5889999999999999998766

>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A

Probab=97.88  E-value=0.00078  Score=42.85  Aligned_cols=48  Identities=17%  Similarity=0.153  Sum_probs=35.0

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCC-CCHHHHHHHHH
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSIS-YDFRMVLDDII   54 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~ll~~il   54 (93)
                      ..++|.|..|+|||+|+..+.++.    +-+.++++.+.+. ....++++++-
T Consensus       158 qr~~I~G~~G~GKT~L~~~Iak~~----~~dvvVyv~iGERg~Ev~e~l~ef~  206 (369)
T cd01134         158 GTAAIPGPFGCGKTVIQQSLSKYS----NSDIVIYVGCGERGNEMTEVLEEFP  206 (369)
T ss_pred             CEEEEECCCCCChHHHHHHHHhCC----CCCEEEEEEeCCChHHHHHHHHHHH
Confidence            467899999999999999998842    2356778877654 44456666653

These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=97.87  E-value=1.5e-05  Score=43.85  Aligned_cols=23  Identities=9%  Similarity=0.007  Sum_probs=21.0

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .+|.+.|..|+||||+++.++..
T Consensus        23 ~~i~l~G~lGaGKTtl~~~l~~~   45 (133)
T TIGR00150        23 TVVLLKGDLGAGKTTLVQGLLQG   45 (133)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHH
Confidence            48899999999999999999884

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>PF14516 AAA_35: AAA-like domain

Probab=97.87  E-value=0.00023  Score=44.76  Aligned_cols=89  Identities=10%  Similarity=0.125  Sum_probs=51.7

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhcCccccc-CCCeeEEEEeCCC-----CCHHHHHHHHHH----hhCCCCCCcc--ccC-
Q 037564            2 SGCKPILDSSSFDKTAFTADTYNNNHVKF-YFDCHAWVRVSIS-----YDFRMVLDDIIK----SVMPPSRVSV--IIG-   68 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~-~f~~~~wv~~~~~-----~~~~~ll~~il~----~l~~~~~~~~--~~~-   68 (93)
                      ...+.|.|+..+|||||..++.+  ..+. .+ .++++++..-     .+...+++.+..    ++.....-..  ... 
T Consensus        31 G~~~~I~apRq~GKTSll~~l~~--~l~~~~~-~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~  107 (331)
T PF14516_consen   31 GSYIRIKAPRQMGKTSLLLRLLE--RLQQQGY-RCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEI  107 (331)
T ss_pred             CCEEEEECcccCCHHHHHHHHHH--HHHHCCC-EEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhc
Confidence            35788999999999999999987  4433 34 3456665431     245555555554    4432211000  001 


Q ss_pred             CCHHHHHHHHHHhc---CCCeEEEEeeC
Q 037564           69 EDYQLKKSILRDYL---TNKKYFIVLDD   93 (93)
Q Consensus        69 ~~~~~l~~~l~~~L---~~kr~LlVlDD   93 (93)
                      .+.......+.+++   .+++.+|+||+
T Consensus       108 ~~~~~~~~~~~~~ll~~~~~~lVL~iDE  135 (331)
T PF14516_consen  108 GSKISCTEYFEEYLLKQIDKPLVLFIDE  135 (331)
T ss_pred             CChhhHHHHHHHHHHhcCCCCEEEEEec
Confidence            23344455555543   25789999995

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.87  E-value=1.4e-05  Score=48.01  Aligned_cols=22  Identities=18%  Similarity=0.099  Sum_probs=19.9

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      -.++|.|++|+|||||.+.+..
T Consensus        30 EfvsilGpSGcGKSTLLriiAG   51 (248)
T COG1116          30 EFVAILGPSGCGKSTLLRLIAG   51 (248)
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            3689999999999999999876

>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=97.87  E-value=0.00017  Score=46.43  Aligned_cols=86  Identities=13%  Similarity=0.164  Sum_probs=54.4

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEe-CCCCCHHHHHHHHHHhhCCCCCCcc--ccC-C-----CHHH
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRV-SISYDFRMVLDDIIKSVMPPSRVSV--IIG-E-----DYQL   73 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~-~~~~~~~~ll~~il~~l~~~~~~~~--~~~-~-----~~~~   73 (93)
                      .-++|...+|+|||||.-.+++.    ..+|..+-.-+ .+.....+++++.+..-+.......  ..+ .     ....
T Consensus       164 QRiGIFAgsGVGKStLLgMiar~----t~aDv~ViaLIGERGREVrEFIE~~Lg~egl~rsViVvATSD~s~l~R~~aa~  239 (441)
T COG1157         164 QRIGIFAGSGVGKSTLLGMIARN----TEADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESALMRLKAAF  239 (441)
T ss_pred             ceeEEEecCCCcHHHHHHHHhcc----ccCCEEEEEEeeccchhHHHHHHHhcchhhccceEEEEECCCCCHHHHHHHHH
Confidence            45889999999999999999883    24554443333 4566778888777765543221111  011 1     2223


Q ss_pred             HHHHHHHhc--CCCeEEEEee
Q 037564           74 KKSILRDYL--TNKKYFIVLD   92 (93)
Q Consensus        74 l~~~l~~~L--~~kr~LlVlD   92 (93)
                      ....+.+++  ++|++|+++|
T Consensus       240 ~At~IAEyFRDqG~~VLL~mD  260 (441)
T COG1157         240 TATTIAEYFRDQGKRVLLIMD  260 (441)
T ss_pred             HHHHHHHHHHhCCCeEEEEee
Confidence            345577777  5789999998

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=97.87  E-value=1.6e-05  Score=45.95  Aligned_cols=23  Identities=9%  Similarity=0.066  Sum_probs=20.6

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .+++|.|++|+|||||.+.+...
T Consensus        19 e~~~i~G~nGsGKSTLl~~i~G~   41 (190)
T TIGR01166        19 EVLALLGANGAGKSTLLLHLNGL   41 (190)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            47899999999999999998863

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=97.87  E-value=6.1e-05  Score=51.72  Aligned_cols=21  Identities=10%  Similarity=0.045  Sum_probs=19.4

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      -+.++|++|+|||++|+.+++
T Consensus       489 giLL~GppGtGKT~lakalA~  509 (733)
T TIGR01243       489 GVLLFGPPGTGKTLLAKAVAT  509 (733)
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            467899999999999999998

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit

Probab=97.86  E-value=9.1e-05  Score=48.31  Aligned_cols=91  Identities=10%  Similarity=0.116  Sum_probs=52.9

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCccccc--CCC---------eeEEEEeCCCCCHHHHHHHHHHhhC-CCCCCcc-c-cC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKF--YFD---------CHAWVRVSISYDFRMVLDDIIKSVM-PPSRVSV-I-IG   68 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~--~f~---------~~~wv~~~~~~~~~~ll~~il~~l~-~~~~~~~-~-~~   68 (93)
                      .-++|.|.+|+|||||+..+.+..+..+  .-+         .+++..+.+.....+.+.+.+..-+ .....-+ . .+
T Consensus       142 QRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~atsd  221 (466)
T TIGR01040       142 QKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLAN  221 (466)
T ss_pred             CeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEECCC
Confidence            4578999999999999999887433100  011         5566777777666666666665543 1110000 0 00


Q ss_pred             -CCHH-----HHHHHHHHhcC---CCeEEEEeeC
Q 037564           69 -EDYQ-----LKKSILRDYLT---NKKYFIVLDD   93 (93)
Q Consensus        69 -~~~~-----~l~~~l~~~L~---~kr~LlVlDD   93 (93)
                       ....     ...-.+-++++   ++++|+++||
T Consensus       222 ~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~Ds  255 (466)
T TIGR01040       222 DPTIERIITPRLALTTAEYLAYQCEKHVLVILTD  255 (466)
T ss_pred             CCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccC
Confidence             1111     12233566665   5899999997

This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=97.86  E-value=1.6e-05  Score=48.18  Aligned_cols=22  Identities=14%  Similarity=0.048  Sum_probs=20.5

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|.|+.|+|||||.+.++.
T Consensus        29 ~i~~iiGpNG~GKSTLLk~l~g   50 (258)
T COG1120          29 EITGILGPNGSGKSTLLKCLAG   50 (258)
T ss_pred             cEEEEECCCCCCHHHHHHHHhc
Confidence            5789999999999999999887

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=97.86  E-value=1.4e-05  Score=46.87  Aligned_cols=22  Identities=14%  Similarity=0.132  Sum_probs=20.2

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|+++|++|+|||||+.++.++
T Consensus         7 kivv~G~~g~GKTtl~~~l~~~   28 (219)
T COG1100           7 KIVVLGDGGVGKTTLLNRLVGD   28 (219)
T ss_pred             EEEEEcCCCccHHHHHHHHhcC
Confidence            5789999999999999999986

>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical

Probab=97.86  E-value=2.3e-05  Score=46.46  Aligned_cols=86  Identities=13%  Similarity=0.010  Sum_probs=49.4

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccC-CCeeEEEEeCCCCCHHHHHHHHHHhhCCCCCC-----cc------cc---
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFY-FDCHAWVRVSISYDFRMVLDDIIKSVMPPSRV-----SV------II---   67 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~-f~~~~wv~~~~~~~~~~ll~~il~~l~~~~~~-----~~------~~---   67 (93)
                      .++.|.|.+|+|||+++.+++.  +-... =+.++|++...+  ..++.+++. .++.....     ..      ..   
T Consensus        20 s~~li~G~~GsGKT~l~~q~l~--~~~~~~ge~vlyvs~ee~--~~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~~~   94 (226)
T PF06745_consen   20 SVVLISGPPGSGKTTLALQFLY--NGLKNFGEKVLYVSFEEP--PEELIENMK-SFGWDLEEYEDSGKLKIIDAFPERIG   94 (226)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHH--HHHHHHT--EEEEESSS---HHHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGGST
T ss_pred             cEEEEEeCCCCCcHHHHHHHHH--HhhhhcCCcEEEEEecCC--HHHHHHHHH-HcCCcHHHHhhcCCEEEEeccccccc
Confidence            5789999999999999999775  22222 345677776543  355554433 33211000     00      00   


Q ss_pred             --CCCHHHHHHHHHHhcCC-CeEEEEeeC
Q 037564           68 --GEDYQLKKSILRDYLTN-KKYFIVLDD   93 (93)
Q Consensus        68 --~~~~~~l~~~l~~~L~~-kr~LlVlDD   93 (93)
                        ..+.+.+...+.+.++. +...+|+|.
T Consensus        95 ~~~~~~~~l~~~i~~~i~~~~~~~vVIDs  123 (226)
T PF06745_consen   95 WSPNDLEELLSKIREAIEELKPDRVVIDS  123 (226)
T ss_dssp             -TSCCHHHHHHHHHHHHHHHTSSEEEEET
T ss_pred             ccccCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence              13667777777777644 335778874

More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....

>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function

Probab=97.86  E-value=9.8e-05  Score=46.67  Aligned_cols=39  Identities=8%  Similarity=-0.096  Sum_probs=29.3

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCccc--ccCCCeeEEEEeCCC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHV--KFYFDCHAWVRVSIS   43 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~--~~~f~~~~wv~~~~~   43 (93)
                      .++.|.|.+|+|||.||-.++.  ++  ........+++...+
T Consensus         2 ~v~~I~G~aGTGKTvla~~l~~--~l~~~~~~~~~~~l~~n~~   42 (352)
T PF09848_consen    2 QVILITGGAGTGKTVLALNLAK--ELQNSEEGKKVLYLCGNHP   42 (352)
T ss_pred             eEEEEEecCCcCHHHHHHHHHH--HhhccccCCceEEEEecch
Confidence            4788999999999999999998  44  444555566665543

It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=97.86  E-value=1.7e-05  Score=46.54  Aligned_cols=23  Identities=13%  Similarity=-0.048  Sum_probs=20.8

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .+++|.|++|+|||||++.+...
T Consensus        27 ~~~~i~G~nGsGKSTLl~~l~G~   49 (210)
T cd03269          27 EIFGLLGPNGAGKTTTIRMILGI   49 (210)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            47899999999999999999874

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=97.86  E-value=1.8e-05  Score=47.55  Aligned_cols=19  Identities=16%  Similarity=0.209  Sum_probs=16.6

Q ss_pred             EEcCCCCcHHHHHHHHhcC
Q 037564            7 ILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         7 i~G~~G~GKTtLa~~~~~~   25 (93)
                      |.||+|+||||+++.+.+.
T Consensus         1 ViGpaGSGKTT~~~~~~~~   19 (238)
T PF03029_consen    1 VIGPAGSGKTTFCKGLSEW   19 (238)
T ss_dssp             -EESTTSSHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHH
Confidence            6899999999999998884

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2

Probab=97.86  E-value=1.3e-05  Score=46.02  Aligned_cols=21  Identities=5%  Similarity=-0.121  Sum_probs=19.1

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +|+|+|+.|+||||+++.+.+
T Consensus         1 ii~itG~~gsGKst~~~~l~~   21 (179)
T cd02022           1 IIGLTGGIGSGKSTVAKLLKE   21 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998865

7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.

>PRK10865 protein disaggregation chaperone; Provisional

Probab=97.86  E-value=4.9e-05  Score=53.01  Aligned_cols=22  Identities=23%  Similarity=0.237  Sum_probs=19.6

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ..+.++|++|+|||++|+.+++
T Consensus       599 ~~~Lf~Gp~G~GKT~lA~aLa~  620 (857)
T PRK10865        599 GSFLFLGPTGVGKTELCKALAN  620 (857)
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            3578899999999999999887

>CHL00095 clpC Clp protease ATP binding subunit

Probab=97.85  E-value=6.5e-05  Score=52.22  Aligned_cols=21  Identities=14%  Similarity=0.143  Sum_probs=18.7

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      -+.++|++|+|||++|+.++.
T Consensus       202 n~lL~G~pGvGKTal~~~la~  222 (821)
T CHL00095        202 NPILIGEPGVGKTAIAEGLAQ  222 (821)
T ss_pred             CeEEECCCCCCHHHHHHHHHH
Confidence            356999999999999999887

>TIGR01287 nifH nitrogenase iron protein

Probab=97.85  E-value=2.1e-05  Score=47.95  Aligned_cols=22  Identities=14%  Similarity=0.084  Sum_probs=19.5

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      |.|+|.|-||+||||++..+..
T Consensus         1 ~~ia~~gKGGVGKTT~a~nLA~   22 (275)
T TIGR01287         1 RQIAIYGKGGIGKSTTTQNIAA   22 (275)
T ss_pred             CeeEEeCCCcCcHHHHHHHHHH
Confidence            5789999999999998888776

This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.

>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=97.85  E-value=1.3e-05  Score=49.02  Aligned_cols=21  Identities=14%  Similarity=0.120  Sum_probs=19.5

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +|+|.|.+|+||||+++.+..
T Consensus         1 iigI~G~sGsGKSTl~~~L~~   21 (273)
T cd02026           1 IIGVAGDSGCGKSTFLRRLTS   21 (273)
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999886

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>PRK13973 thymidylate kinase; Provisional

Probab=97.85  E-value=7.1e-05  Score=44.19  Aligned_cols=22  Identities=5%  Similarity=-0.176  Sum_probs=20.5

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ..|++-|..|+||||+++.++.
T Consensus         4 ~~IviEG~dGsGKtTq~~~l~~   25 (213)
T PRK13973          4 RFITFEGGEGAGKSTQIRLLAE   25 (213)
T ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Confidence            5789999999999999999988

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=97.85  E-value=1.8e-05  Score=47.21  Aligned_cols=23  Identities=13%  Similarity=0.011  Sum_probs=20.8

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .+++|.|++|+|||||++.+...
T Consensus        27 e~~~l~G~nGsGKSTLl~~l~G~   49 (235)
T cd03261          27 EILAIIGPSGSGKSTLLRLIVGL   49 (235)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            47899999999999999998873

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=97.84  E-value=1.8e-05  Score=46.47  Aligned_cols=23  Identities=17%  Similarity=0.062  Sum_probs=20.6

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .+++|.|++|+|||||++.+..-
T Consensus        29 ~~~~l~G~nGsGKSTLl~~i~Gl   51 (214)
T TIGR02673        29 EFLFLTGPSGAGKTTLLKLLYGA   51 (214)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            47899999999999999998773

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>PRK04328 hypothetical protein; Provisional

Probab=97.84  E-value=7.4e-05  Score=45.15  Aligned_cols=39  Identities=8%  Similarity=-0.034  Sum_probs=28.9

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSIS   43 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~   43 (93)
                      .++.|.|.+|+|||+||.++..  +....-..++|++...+
T Consensus        24 s~ili~G~pGsGKT~l~~~fl~--~~~~~ge~~lyis~ee~   62 (249)
T PRK04328         24 NVVLLSGGPGTGKSIFSQQFLW--NGLQMGEPGVYVALEEH   62 (249)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHH--HHHhcCCcEEEEEeeCC
Confidence            5788999999999999999776  22223456788877653

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.84  E-value=1.7e-05  Score=47.26  Aligned_cols=22  Identities=14%  Similarity=0.003  Sum_probs=19.4

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      -.++|.|++|+|||||...+..
T Consensus        32 e~vaI~GpSGSGKSTLLniig~   53 (226)
T COG1136          32 EFVAIVGPSGSGKSTLLNLLGG   53 (226)
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            3789999999999999998764

>PLN02348 phosphoribulokinase

Probab=97.84  E-value=1.4e-05  Score=51.02  Aligned_cols=22  Identities=14%  Similarity=0.081  Sum_probs=20.4

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      -+|+|.|.+|+||||+|+.+.+
T Consensus        50 ~IIGIaG~SGSGKSTfA~~L~~   71 (395)
T PLN02348         50 VVIGLAADSGCGKSTFMRRLTS   71 (395)
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999999887

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=97.84  E-value=1.8e-05  Score=47.31  Aligned_cols=22  Identities=14%  Similarity=0.081  Sum_probs=20.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|.|++|+|||||++.++.
T Consensus        29 e~~~l~G~nGsGKSTLl~~l~G   50 (243)
T TIGR02315        29 EFVAIIGPSGAGKSTLLRCINR   50 (243)
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            4789999999999999999876

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=97.84  E-value=1.9e-05  Score=46.61  Aligned_cols=23  Identities=13%  Similarity=-0.048  Sum_probs=20.8

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .+++|.|++|+|||||++.++.-
T Consensus        29 e~~~i~G~nGsGKSTLl~~l~Gl   51 (220)
T cd03263          29 EIFGLLGHNGAGKTTTLKMLTGE   51 (220)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            47899999999999999999873

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]

Probab=97.84  E-value=1.8e-05  Score=46.48  Aligned_cols=24  Identities=4%  Similarity=-0.162  Sum_probs=20.6

Q ss_pred             CCceeeEEcCCCCcHHHHHHHHhc
Q 037564            1 FSGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         1 ~~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +..+|+++|+.|+||||.|+.+.+
T Consensus         1 ~~~iIglTG~igsGKStva~~~~~   24 (201)
T COG0237           1 MMLIIGLTGGIGSGKSTVAKILAE   24 (201)
T ss_pred             CceEEEEecCCCCCHHHHHHHHHH
Confidence            346899999999999999997655

>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional

Probab=97.84  E-value=1.9e-05  Score=50.22  Aligned_cols=28  Identities=11%  Similarity=-0.108  Sum_probs=23.2

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhcCcccccC
Q 037564            2 SGCKPILDSSSFDKTAFTADTYNNNHVKFY   31 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~   31 (93)
                      +-+|+|+|.+|+|||||+..+..  +++..
T Consensus         5 ~~~i~i~G~~gsGKTTl~~~l~~--~l~~~   32 (369)
T PRK14490          5 PFEIAFCGYSGSGKTTLITALVR--RLSER   32 (369)
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHH--HHhhC
Confidence            45899999999999999999887  44433

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=97.84  E-value=1.9e-05  Score=46.65  Aligned_cols=23  Identities=9%  Similarity=0.005  Sum_probs=20.8

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .+++|.|++|+|||||++.++.-
T Consensus        31 ~~~~i~G~nGsGKSTLl~~l~Gl   53 (220)
T cd03293          31 EFVALVGPSGCGKSTLLRIIAGL   53 (220)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            47899999999999999998874

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>CHL00059 atpA ATP synthase CF1 alpha subunit

Probab=97.84  E-value=0.00015  Score=47.58  Aligned_cols=87  Identities=15%  Similarity=0.151  Sum_probs=47.0

Q ss_pred             ceeeEEcCCCCcHHHHHH-HHhcCcccccCCC-eeEEEEeCCCC-CHHHHHHHHHHhhCCCCCCcc-cc-C-CCHHHH--
Q 037564            3 GCKPILDSSSFDKTAFTA-DTYNNNHVKFYFD-CHAWVRVSISY-DFRMVLDDIIKSVMPPSRVSV-II-G-EDYQLK--   74 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~-~~~~~~~~~~~f~-~~~wv~~~~~~-~~~~ll~~il~~l~~~~~~~~-~~-~-~~~~~l--   74 (93)
                      .-++|.|.+|+|||+||. .+.+.  .  .-+ .++++-+.+.. ...++.+.+.+.-......-. .. + ......  
T Consensus       142 QR~~I~g~~g~GKt~Lal~~I~~q--~--~~dv~cV~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atad~~~~~r~~a  217 (485)
T CHL00059        142 QRELIIGDRQTGKTAVATDTILNQ--K--GQNVICVYVAIGQKASSVAQVVTTLQERGAMEYTIVVAETADSPATLQYLA  217 (485)
T ss_pred             CEEEeecCCCCCHHHHHHHHHHhc--c--cCCeEEEEEEecCCchHHHHHHHHhhcccchhceEEEEeCCCCCHHHHHHH
Confidence            357899999999999965 45552  1  223 34777776544 456666665543211110000 00 0 111111  


Q ss_pred             ---HHHHHHhc--CCCeEEEEeeC
Q 037564           75 ---KSILRDYL--TNKKYFIVLDD   93 (93)
Q Consensus        75 ---~~~l~~~L--~~kr~LlVlDD   93 (93)
                         .-.+-+++  +++++|+|+||
T Consensus       218 p~~a~aiAEyfr~~G~~VLlv~Dd  241 (485)
T CHL00059        218 PYTGAALAEYFMYRGRHTLIIYDD  241 (485)
T ss_pred             HHHHhhHHHHHHHcCCCEEEEEcC
Confidence               12244444  57899999997

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=97.84  E-value=1.8e-05  Score=46.52  Aligned_cols=23  Identities=9%  Similarity=0.062  Sum_probs=20.8

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .+++|.|++|+|||||++.+...
T Consensus        26 e~~~l~G~nGsGKSTLl~~l~G~   48 (213)
T cd03235          26 EFLAIVGPNGAGKSTLLKAILGL   48 (213)
T ss_pred             CEEEEECCCCCCHHHHHHHHcCC
Confidence            47899999999999999998874

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>TIGR00017 cmk cytidylate kinase

Probab=97.83  E-value=2e-05  Score=46.75  Aligned_cols=24  Identities=13%  Similarity=0.019  Sum_probs=21.4

Q ss_pred             CCceeeEEcCCCCcHHHHHHHHhc
Q 037564            1 FSGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         1 ~~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      |..+|+|.|++|+||||+++.+..
T Consensus         1 ~~~~i~i~G~~GsGKst~~~~la~   24 (217)
T TIGR00017         1 MAMIIAIDGPSGAGKSTVAKAVAE   24 (217)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999999986

This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.

>CHL00060 atpB ATP synthase CF1 beta subunit

Probab=97.83  E-value=6.6e-05  Score=49.30  Aligned_cols=52  Identities=13%  Similarity=0.060  Sum_probs=36.5

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCC-CCHHHHHHHHHH
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSIS-YDFRMVLDDIIK   55 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~ll~~il~   55 (93)
                      .-++|.|.+|+|||+|+..+..+. .+.+=+.++++-+.+. ....+++..++.
T Consensus       162 QR~gIfgg~GvGKs~L~~~~~~~~-~~~~~dv~V~~lIGERgrEv~efi~~~~~  214 (494)
T CHL00060        162 GKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKE  214 (494)
T ss_pred             CEEeeecCCCCChhHHHHHHHHHH-HHhcCCeEEEEEeccCchHHHHHHHHHHh
Confidence            457899999999999999877731 1111266778777654 455777777766

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=97.83  E-value=1.9e-05  Score=47.15  Aligned_cols=23  Identities=9%  Similarity=0.008  Sum_probs=20.6

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .+++|.|++|+|||||++.++.-
T Consensus        28 e~~~i~G~nGsGKSTLl~~l~Gl   50 (241)
T cd03256          28 EFVALIGPSGAGKSTLLRCLNGL   50 (241)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            47899999999999999998763

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK07960 fliI flagellum-specific ATP synthase; Validated

Probab=97.83  E-value=6.8e-05  Score=48.81  Aligned_cols=22  Identities=9%  Similarity=0.033  Sum_probs=20.1

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ..++|.|.+|+|||||.+.+..
T Consensus       176 qri~I~G~sG~GKTTLL~~Ia~  197 (455)
T PRK07960        176 QRMGLFAGSGVGKSVLLGMMAR  197 (455)
T ss_pred             cEEEEECCCCCCccHHHHHHhC
Confidence            5789999999999999998887

>PF13245 AAA_19: Part of AAA domain

Probab=97.83  E-value=2.5e-05  Score=38.96  Aligned_cols=22  Identities=18%  Similarity=-0.017  Sum_probs=16.1

Q ss_pred             CceeeEEcCCCCcHHHHHHHHh
Q 037564            2 SGCKPILDSSSFDKTAFTADTY   23 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~   23 (93)
                      +++..|.|++|.|||+++....
T Consensus        10 ~~~~vv~g~pGtGKT~~~~~~i   31 (76)
T PF13245_consen   10 SPLFVVQGPPGTGKTTTLAARI   31 (76)
T ss_pred             CCeEEEECCCCCCHHHHHHHHH
Confidence            4567789999999995444433

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=97.83  E-value=2e-05  Score=46.28  Aligned_cols=23  Identities=13%  Similarity=0.131  Sum_probs=20.8

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .+++|.|++|+|||||++.+...
T Consensus        28 ~~~~i~G~nGsGKSTLl~~l~G~   50 (214)
T cd03292          28 EFVFLVGPSGAGKSTLLKLIYKE   50 (214)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            47899999999999999998874

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=97.83  E-value=2.9e-05  Score=48.92  Aligned_cols=23  Identities=13%  Similarity=0.112  Sum_probs=20.6

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+.+.|.|+.|+||||+.+.+..
T Consensus       122 ~g~ili~G~tGSGKTT~l~al~~  144 (343)
T TIGR01420       122 RGLILVTGPTGSGKSTTLASMID  144 (343)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            36889999999999999998877

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]

Probab=97.83  E-value=4.8e-05  Score=44.59  Aligned_cols=21  Identities=14%  Similarity=0.053  Sum_probs=18.4

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +|+|.|+.-.||||||+.+..
T Consensus         6 ivgiSG~TnsGKTTLak~l~~   26 (225)
T KOG3308|consen    6 IVGISGCTNSGKTTLAKSLHR   26 (225)
T ss_pred             EEEeecccCCCHhHHHHHHHH
Confidence            688889988999999998765

>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH)

Probab=97.83  E-value=0.00019  Score=38.62  Aligned_cols=20  Identities=20%  Similarity=0.089  Sum_probs=18.5

Q ss_pred             eeEEcCCCCcHHHHHHHHhc
Q 037564            5 KPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~   24 (93)
                      |.+.|.+|+||||++..+..
T Consensus         2 i~~~GkgG~GKTt~a~~la~   21 (116)
T cd02034           2 IAITGKGGVGKTTIAALLAR   21 (116)
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999998877

CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.83  E-value=7.4e-05  Score=49.02  Aligned_cols=21  Identities=10%  Similarity=0.011  Sum_probs=19.1

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+.++|++|+||||+|+.+++
T Consensus        42 a~Lf~GP~GtGKTTlAriLAk   62 (484)
T PRK14956         42 AYIFFGPRGVGKTTIARILAK   62 (484)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            467899999999999999988

>PLN03046 D-glycerate 3-kinase; Provisional

Probab=97.83  E-value=7.5e-05  Score=48.35  Aligned_cols=22  Identities=9%  Similarity=-0.133  Sum_probs=19.8

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      -+|+|.|..|+|||||++.+..
T Consensus       213 lIIGIsG~qGSGKSTLa~~L~~  234 (460)
T PLN03046        213 LVIGFSAPQGCGKTTLVFALDY  234 (460)
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3789999999999999999865

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=97.83  E-value=8.7e-05  Score=48.80  Aligned_cols=28  Identities=11%  Similarity=0.010  Sum_probs=22.8

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYF   32 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f   32 (93)
                      +.+.++|++|.|||.||+++++  .....|
T Consensus       277 ~giLl~GpPGtGKT~lAkava~--~~~~~f  304 (494)
T COG0464         277 KGVLLYGPPGTGKTLLAKAVAL--ESRSRF  304 (494)
T ss_pred             CeeEEECCCCCCHHHHHHHHHh--hCCCeE
Confidence            4578899999999999999999  444444

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=97.82  E-value=2.1e-05  Score=46.24  Aligned_cols=23  Identities=17%  Similarity=0.043  Sum_probs=20.6

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .+++|.|++|+|||||++.+..-
T Consensus        27 e~~~i~G~nGsGKSTLl~~l~G~   49 (213)
T cd03259          27 EFLALLGPSGCGKTTLLRLIAGL   49 (213)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            47899999999999999998873

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=97.82  E-value=2.1e-05  Score=46.63  Aligned_cols=22  Identities=9%  Similarity=0.086  Sum_probs=20.1

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|.|++|+|||||++.+..
T Consensus        27 e~~~i~G~nGsGKSTLl~~i~G   48 (227)
T cd03260          27 EITALIGPSGCGKSTLLRLLNR   48 (227)
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            4789999999999999999876

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=97.82  E-value=2e-05  Score=43.89  Aligned_cols=22  Identities=14%  Similarity=0.149  Sum_probs=19.5

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|+++|.+|+|||||...+.+.
T Consensus         2 ki~~~G~~~~GKTsl~~~l~~~   23 (164)
T cd04139           2 KVIVVGAGGVGKSALTLQFMYD   23 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3789999999999999998764

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=97.82  E-value=2.1e-05  Score=47.06  Aligned_cols=23  Identities=17%  Similarity=0.010  Sum_probs=20.8

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .+++|.|++|+|||||++.+..-
T Consensus        29 e~~~i~G~nGsGKSTLl~~l~Gl   51 (239)
T cd03296          29 ELVALLGPSGSGKTTLLRLIAGL   51 (239)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            57899999999999999998874

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK05896 DNA polymerase III subunits gamma and tau; Validated

Probab=97.82  E-value=4.8e-05  Score=51.09  Aligned_cols=22  Identities=9%  Similarity=-0.062  Sum_probs=19.3

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ..+.++|++|+||||+|+.+.+
T Consensus        39 hA~Lf~GP~GvGKTTlA~~lAk   60 (605)
T PRK05896         39 HAYIFSGPRGIGKTSIAKIFAK   60 (605)
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            4567899999999999999877

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=97.82  E-value=0.00033  Score=43.34  Aligned_cols=28  Identities=18%  Similarity=0.096  Sum_probs=22.8

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYF   32 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f   32 (93)
                      .++.|.|.+|+|||||...+..  .+....
T Consensus       105 ~~v~l~G~pGsGKTTLl~~l~~--~l~~~~  132 (290)
T PRK10463        105 LVLNLVSSPGSGKTTLLTETLM--RLKDSV  132 (290)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH--HhccCC
Confidence            4789999999999999999988  444433

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=97.82  E-value=2.1e-05  Score=46.93  Aligned_cols=23  Identities=9%  Similarity=-0.002  Sum_probs=20.7

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .+++|.|++|+|||||++.+...
T Consensus        28 e~~~i~G~nGsGKSTLl~~l~G~   50 (236)
T TIGR03864        28 EFVALLGPNGAGKSTLFSLLTRL   50 (236)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            57899999999999999999863

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=97.82  E-value=2e-05  Score=45.16  Aligned_cols=22  Identities=14%  Similarity=0.058  Sum_probs=20.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|.|++|+|||||++.+..
T Consensus        27 ~~~~i~G~nGsGKSTLl~~l~G   48 (178)
T cd03229          27 EIVALLGPSGSGKSTLLRCIAG   48 (178)
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            4789999999999999999886

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd00984 DnaB_C DnaB helicase C terminal domain

Probab=97.82  E-value=8.3e-05  Score=44.40  Aligned_cols=48  Identities=17%  Similarity=0.155  Sum_probs=31.3

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccC-CCeeEEEEeCCCCCHHHHHHHHH
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFY-FDCHAWVRVSISYDFRMVLDDII   54 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~-f~~~~wv~~~~~~~~~~ll~~il   54 (93)
                      .++.|.|.+|+|||+++.+++.+  .... =....|+++..  +..++..+++
T Consensus        14 ~l~lI~G~~G~GKT~~~~~~~~~--~~~~~g~~vly~s~E~--~~~~~~~r~~   62 (242)
T cd00984          14 DLIIIAARPSMGKTAFALNIAEN--IAKKQGKPVLFFSLEM--SKEQLLQRLL   62 (242)
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHH--HHHhCCCceEEEeCCC--CHHHHHHHHH
Confidence            47889999999999999988763  2222 23456666544  3444444443

The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=97.81  E-value=2.2e-05  Score=45.90  Aligned_cols=23  Identities=9%  Similarity=-0.060  Sum_probs=20.8

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .+++|.|++|+|||||.+.++.-
T Consensus        27 e~~~i~G~nGsGKSTLl~~l~Gl   49 (205)
T cd03226          27 EIIALTGKNGAGKTTLAKILAGL   49 (205)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            47899999999999999998873

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=97.81  E-value=2.3e-05  Score=46.51  Aligned_cols=23  Identities=13%  Similarity=0.020  Sum_probs=20.9

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .+++|.|++|+|||||++.++.-
T Consensus        37 e~~~i~G~nGsGKSTLl~~i~Gl   59 (228)
T PRK10584         37 ETIALIGESGSGKSTLLAILAGL   59 (228)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcC
Confidence            58999999999999999998873

>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family

Probab=97.81  E-value=9.8e-05  Score=43.85  Aligned_cols=38  Identities=13%  Similarity=-0.120  Sum_probs=27.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSI   42 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~   42 (93)
                      .++.|.|.+|+|||+++.++...  ....-...+|++...
T Consensus        21 ~~~~i~G~~G~GKT~l~~~~~~~--~~~~g~~~~~is~e~   58 (229)
T TIGR03881        21 FFVAVTGEPGTGKTIFCLHFAYK--GLRDGDPVIYVTTEE   58 (229)
T ss_pred             eEEEEECCCCCChHHHHHHHHHH--HHhcCCeEEEEEccC
Confidence            47889999999999999987652  222334567777644

Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.

>cd04163 Era Era subfamily

Probab=97.81  E-value=2.2e-05  Score=43.56  Aligned_cols=24  Identities=17%  Similarity=0.250  Sum_probs=21.2

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhcC
Q 037564            2 SGCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      +..|++.|..|+||||+...+...
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~   26 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQ   26 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCC
Confidence            467999999999999999998764

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>PRK01184 hypothetical protein; Provisional

Probab=97.80  E-value=1.8e-05  Score=45.54  Aligned_cols=21  Identities=10%  Similarity=0.058  Sum_probs=17.8

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+|+++|++|+||||+++ ++.
T Consensus         2 ~~i~l~G~~GsGKsT~a~-~~~   22 (184)
T PRK01184          2 KIIGVVGMPGSGKGEFSK-IAR   22 (184)
T ss_pred             cEEEEECCCCCCHHHHHH-HHH
Confidence            378999999999999987 444

>PRK13343 F0F1 ATP synthase subunit alpha; Provisional

Probab=97.80  E-value=0.00014  Score=47.99  Aligned_cols=87  Identities=16%  Similarity=0.138  Sum_probs=48.1

Q ss_pred             ceeeEEcCCCCcHHHHH-HHHhcCcccccCCCe-eEEEEeCCCC-CHHHHHHHHHHhhCCCCCCcc--ccC-CCHHHH--
Q 037564            3 GCKPILDSSSFDKTAFT-ADTYNNNHVKFYFDC-HAWVRVSISY-DFRMVLDDIIKSVMPPSRVSV--IIG-EDYQLK--   74 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa-~~~~~~~~~~~~f~~-~~wv~~~~~~-~~~~ll~~il~~l~~~~~~~~--~~~-~~~~~l--   74 (93)
                      .-++|.|.+|+|||+|| ..+.+.  .  .-+. ++++-+.+.. ...++.+.+...-......-.  ..+ ......  
T Consensus       163 QR~~I~g~~g~GKt~Lal~~i~~~--~--~~dv~~V~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atsd~~~~~r~~a  238 (502)
T PRK13343        163 QRELIIGDRQTGKTAIAIDAIINQ--K--DSDVICVYVAIGQKASAVARVIETLREHGALEYTTVVVAEASDPPGLQYLA  238 (502)
T ss_pred             CEEEeeCCCCCCccHHHHHHHHhh--c--CCCEEEEEEEeccChHHHHHHHHHHHhcCccceeEEEEecccccHHHHHHH
Confidence            45789999999999996 555552  1  2233 4777776654 445666665543211110000  000 111111  


Q ss_pred             ---HHHHHHhc--CCCeEEEEeeC
Q 037564           75 ---KSILRDYL--TNKKYFIVLDD   93 (93)
Q Consensus        75 ---~~~l~~~L--~~kr~LlVlDD   93 (93)
                         .-.+-+++  +++++|+++||
T Consensus       239 p~~a~aiAEyfrd~G~~VLlv~Dd  262 (502)
T PRK13343        239 PFAGCAIAEYFRDQGQDALIVYDD  262 (502)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEecc
Confidence               12344555  67899999997

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=97.80  E-value=2.5e-05  Score=46.11  Aligned_cols=23  Identities=22%  Similarity=0.044  Sum_probs=20.9

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .+++|.|++|.|||||.+.++.-
T Consensus        14 e~~~l~G~NGsGKSTLlk~i~Gl   36 (213)
T PRK15177         14 EHIGILAAPGSGKTTLTRLLCGL   36 (213)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            57899999999999999999873

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=97.80  E-value=3.1e-05  Score=43.96  Aligned_cols=23  Identities=13%  Similarity=0.174  Sum_probs=21.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      +++.+.|.+|+|||||...+..+
T Consensus        36 k~~vl~G~SGvGKSSLiN~L~~~   58 (161)
T PF03193_consen   36 KTSVLLGQSGVGKSSLINALLPE   58 (161)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            67899999999999999999886

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=97.80  E-value=2.4e-05  Score=46.19  Aligned_cols=23  Identities=13%  Similarity=-0.084  Sum_probs=20.7

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .+++|.|++|+|||||.+.+...
T Consensus        27 e~~~i~G~nGsGKSTLl~~i~G~   49 (220)
T cd03265          27 EIFGLLGPNGAGKTTTIKMLTTL   49 (220)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            57899999999999999998873

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK12338 hypothetical protein; Provisional

Probab=97.79  E-value=2e-05  Score=49.18  Aligned_cols=23  Identities=13%  Similarity=0.066  Sum_probs=20.9

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +.+|.|.|.+|+||||+|+.+..
T Consensus         4 p~ii~i~G~sGsGKST~a~~la~   26 (319)
T PRK12338          4 PYVILIGSASGIGKSTIASELAR   26 (319)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHH
Confidence            35899999999999999999887

>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=97.79  E-value=0.0001  Score=44.54  Aligned_cols=29  Identities=7%  Similarity=-0.134  Sum_probs=23.5

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCCC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFD   33 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~   33 (93)
                      .-|.+||..|+||++|.+++++  ++.+..-
T Consensus        86 NnVLLwGaRGtGKSSLVKA~~~--e~~~~gl  114 (287)
T COG2607          86 NNVLLWGARGTGKSSLVKALLN--EYADEGL  114 (287)
T ss_pred             cceEEecCCCCChHHHHHHHHH--HHHhcCC
Confidence            3578999999999999999998  5555443

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=97.79  E-value=2.5e-05  Score=46.49  Aligned_cols=23  Identities=13%  Similarity=-0.018  Sum_probs=20.6

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .+++|.|++|+|||||++.+..-
T Consensus        32 e~~~l~G~nGsGKSTLl~~l~G~   54 (233)
T cd03258          32 EIFGIIGRSGAGKSTLIRCINGL   54 (233)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            47899999999999999998764

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=97.79  E-value=0.00032  Score=45.89  Aligned_cols=88  Identities=11%  Similarity=0.100  Sum_probs=55.8

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHHHHhhCCCCCCccccCCCHHHHHHHHHHh
Q 037564            2 SGCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDY   81 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~   81 (93)
                      ++-+=|.|-+|.|||.+...++.+..-...=...+++++..-.....+...|...+......+    .+..+....+..+
T Consensus       175 ~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~s~----~~~~~~~~~~~~h  250 (529)
T KOG2227|consen  175 SGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSSLLQDLVSP----GTGMQHLEKFEKH  250 (529)
T ss_pred             CcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHHHHHHhcCC----chhHHHHHHHHHH
Confidence            455668899999999999998884221111123467776665667777777777763211111    2335666777777


Q ss_pred             cCCC--eEEEEeeC
Q 037564           82 LTNK--KYFIVLDD   93 (93)
Q Consensus        82 L~~k--r~LlVlDD   93 (93)
                      ....  -+|+|+|.
T Consensus       251 ~~q~k~~~llVlDE  264 (529)
T KOG2227|consen  251 TKQSKFMLLLVLDE  264 (529)
T ss_pred             HhcccceEEEEech
Confidence            7443  47888884

>CHL00181 cbbX CbbX; Provisional

Probab=97.79  E-value=1.8e-05  Score=48.75  Aligned_cols=21  Identities=14%  Similarity=0.067  Sum_probs=18.8

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      -+.++|++|+||||+|+.+++
T Consensus        61 ~ill~G~pGtGKT~lAr~la~   81 (287)
T CHL00181         61 HMSFTGSPGTGKTTVALKMAD   81 (287)
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            367899999999999999977

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=97.79  E-value=2.5e-05  Score=46.53  Aligned_cols=23  Identities=17%  Similarity=-0.019  Sum_probs=20.7

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .+++|.|++|+|||||++.++.-
T Consensus        36 e~~~l~G~nGsGKSTLl~~l~Gl   58 (233)
T PRK11629         36 EMMAIVGSSGSGKSTLLHLLGGL   58 (233)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcC
Confidence            47899999999999999998863

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=97.79  E-value=2.5e-05  Score=47.28  Aligned_cols=23  Identities=17%  Similarity=0.010  Sum_probs=20.8

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .+++|.|++|+|||||++.++.-
T Consensus        28 e~~~i~G~nGsGKSTLl~~l~Gl   50 (255)
T PRK11248         28 ELLVVLGPSGCGKTTLLNLIAGF   50 (255)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            57899999999999999998863

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=97.79  E-value=2.1e-05  Score=46.11  Aligned_cols=21  Identities=14%  Similarity=0.036  Sum_probs=19.7

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +++|.|++|+|||||++.++.
T Consensus        27 ~~~i~G~nGsGKSTLl~~l~G   47 (211)
T cd03264          27 MYGLLGPNGAGKTTLMRILAT   47 (211)
T ss_pred             cEEEECCCCCCHHHHHHHHhC
Confidence            789999999999999999886

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes

Probab=97.79  E-value=2.2e-05  Score=44.46  Aligned_cols=22  Identities=14%  Similarity=0.013  Sum_probs=20.5

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +++.|+|.+|+|||||+.++..
T Consensus         2 ~vi~i~G~~gsGKTTli~~L~~   23 (159)
T cd03116           2 KVIGFVGYSGSGKTTLLEKLIP   23 (159)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999988

In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=97.79  E-value=2.6e-05  Score=46.05  Aligned_cols=23  Identities=17%  Similarity=-0.026  Sum_probs=20.7

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .+++|.|++|+|||||.+.++..
T Consensus        32 ~~~~i~G~nGsGKSTLl~~i~G~   54 (221)
T TIGR02211        32 EIVAIVGSSGSGKSTLLHLLGGL   54 (221)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            47899999999999999998863

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=97.78  E-value=2.5e-05  Score=47.07  Aligned_cols=23  Identities=22%  Similarity=0.153  Sum_probs=21.0

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .+++|.|++|+|||||++.+...
T Consensus        26 e~~~i~G~NGsGKSTLlk~L~G~   48 (246)
T cd03237          26 EVIGILGPNGIGKTTFIKMLAGV   48 (246)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            47899999999999999999874

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=97.78  E-value=0.00028  Score=45.66  Aligned_cols=57  Identities=12%  Similarity=-0.034  Sum_probs=35.8

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhcCcccccCCCee-EEEEeC-CCCCHHHHHHHHHHhhCCCC
Q 037564            2 SGCKPILDSSSFDKTAFTADTYNNNHVKFYFDCH-AWVRVS-ISYDFRMVLDDIIKSVMPPS   61 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~-~wv~~~-~~~~~~~ll~~il~~l~~~~   61 (93)
                      +.+|.++|.-|.||||-|-++++.  ++. .... .-++.. ..+...+-++++.+++..+.
T Consensus       100 P~vImmvGLQGsGKTTt~~KLA~~--lkk-~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~  158 (451)
T COG0541         100 PTVILMVGLQGSGKTTTAGKLAKY--LKK-KGKKVLLVAADTYRPAAIEQLKQLAEQVGVPF  158 (451)
T ss_pred             CeEEEEEeccCCChHhHHHHHHHH--HHH-cCCceEEEecccCChHHHHHHHHHHHHcCCce
Confidence            358899999999999999888873  333 2222 222222 22344566777777776543

>PRK14529 adenylate kinase; Provisional

Probab=97.78  E-value=0.00012  Score=43.67  Aligned_cols=20  Identities=15%  Similarity=-0.051  Sum_probs=18.5

Q ss_pred             eeEEcCCCCcHHHHHHHHhc
Q 037564            5 KPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~   24 (93)
                      |.+.|++|+||||+|+.+..
T Consensus         3 I~l~G~PGsGK~T~a~~La~   22 (223)
T PRK14529          3 ILIFGPNGSGKGTQGALVKK   22 (223)
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78899999999999998877

>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha

Probab=97.78  E-value=0.00012  Score=48.20  Aligned_cols=87  Identities=14%  Similarity=0.092  Sum_probs=49.5

Q ss_pred             ceeeEEcCCCCcHHHHH-HHHhcCcccccCCCe-eEEEEeCCCC-CHHHHHHHHHHhhCCCCCCcc-c-cC-CCHHH---
Q 037564            3 GCKPILDSSSFDKTAFT-ADTYNNNHVKFYFDC-HAWVRVSISY-DFRMVLDDIIKSVMPPSRVSV-I-IG-EDYQL---   73 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa-~~~~~~~~~~~~f~~-~~wv~~~~~~-~~~~ll~~il~~l~~~~~~~~-~-~~-~~~~~---   73 (93)
                      .-++|.|.+|+|||||| ..+.+.  .  .-+. ++++-+.+.. ...++.+.+.+.-......-. . .+ .....   
T Consensus       163 QR~~Ifg~~g~GKT~Lal~~I~~q--~--~~dv~~V~~~IGeR~rev~e~i~~l~~~~~l~~tvvV~atsd~p~~~r~~a  238 (497)
T TIGR03324       163 QRELILGDRQTGKTAIAIDTILNQ--K--GRNVLCIYCAIGQRASAVAKVVANLREHGAMDYTIVVVTEGNDPPGLQYIA  238 (497)
T ss_pred             CEEEeecCCCCCHHHHHHHHHHHh--c--CCCcEEEEEEeccCcHHHHHHHHHhhhcCCcceeEEEEeCCCCCHHHHHHH
Confidence            45789999999999996 466662  1  2343 6788787654 456666666654221110000 0 00 11111   


Q ss_pred             --HHHHHHHhc--CCCeEEEEeeC
Q 037564           74 --KKSILRDYL--TNKKYFIVLDD   93 (93)
Q Consensus        74 --l~~~l~~~L--~~kr~LlVlDD   93 (93)
                        ..-.+-+++  +++++|+++||
T Consensus       239 p~~a~aiAEyfrd~G~~VLlv~Dd  262 (497)
T TIGR03324       239 PYAATSIGEHFMEQGRDVLIVYDD  262 (497)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEEcC
Confidence              122345555  67899999997

A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=97.78  E-value=7.6e-05  Score=49.08  Aligned_cols=49  Identities=12%  Similarity=0.135  Sum_probs=33.3

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHH
Q 037564            2 SGCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDI   53 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i   53 (93)
                      .+++.|.|++|+||||+|.+++.. ...+.=+.++|++..+  +..++.+.+
T Consensus        21 g~~~Li~G~pGsGKT~la~qfl~~-g~~~~ge~~lyvs~eE--~~~~l~~~~   69 (484)
T TIGR02655        21 GRSTLVSGTSGTGKTLFSIQFLYN-GIIHFDEPGVFVTFEE--SPQDIIKNA   69 (484)
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH-HHHhCCCCEEEEEEec--CHHHHHHHH
Confidence            357889999999999999998652 1222125678888753  445554443

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=97.78  E-value=2.8e-05  Score=41.44  Aligned_cols=21  Identities=10%  Similarity=0.175  Sum_probs=19.4

Q ss_pred             eeEEcCCCCcHHHHHHHHhcC
Q 037564            5 KPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      |+|.|++|+|||||.+.+...
T Consensus         2 V~iiG~~~~GKSTlin~l~~~   22 (116)
T PF01926_consen    2 VAIIGRPNVGKSTLINALTGK   22 (116)
T ss_dssp             EEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEECCCCCCHHHHHHHHhcc
Confidence            789999999999999999973

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed

Probab=97.78  E-value=1.9e-05  Score=54.08  Aligned_cols=27  Identities=19%  Similarity=0.204  Sum_probs=21.7

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcCcccccCC
Q 037564            4 CKPILDSSSFDKTAFTADTYNNNHVKFYF   32 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~~~~~~~f   32 (93)
                      -+.++|++|+||||||+.+++  .....|
T Consensus        54 slLL~GPpGtGKTTLA~aIA~--~~~~~f   80 (725)
T PRK13341         54 SLILYGPPGVGKTTLARIIAN--HTRAHF   80 (725)
T ss_pred             eEEEECCCCCCHHHHHHHHHH--HhcCcc
Confidence            467899999999999999998  444344

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.78  E-value=2.7e-05  Score=45.24  Aligned_cols=23  Identities=9%  Similarity=-0.029  Sum_probs=20.9

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .+++|.|.+|.|||||++.+...
T Consensus        27 e~~~l~G~nGsGKSTLl~~l~G~   49 (195)
T PRK13541         27 AITYIKGANGCGKSSLLRMIAGI   49 (195)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcC
Confidence            47899999999999999998874

>TIGR01351 adk adenylate kinases

Probab=97.78  E-value=2e-05  Score=46.32  Aligned_cols=20  Identities=10%  Similarity=-0.004  Sum_probs=18.5

Q ss_pred             eeEEcCCCCcHHHHHHHHhc
Q 037564            5 KPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~   24 (93)
                      |.|.|++|+||||+|+.+..
T Consensus         2 I~i~G~pGsGKsT~a~~La~   21 (210)
T TIGR01351         2 LVLLGPPGSGKGTQAKRIAE   21 (210)
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67899999999999999876

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=97.78  E-value=2.7e-05  Score=45.45  Aligned_cols=23  Identities=13%  Similarity=-0.077  Sum_probs=20.7

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .+++|.|++|.|||||.+.+..-
T Consensus        25 e~~~i~G~nGsGKSTLl~~l~G~   47 (206)
T TIGR03608        25 KMYAIIGESGSGKSTLLNIIGLL   47 (206)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcC
Confidence            47899999999999999998863

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=97.78  E-value=3.8e-05  Score=44.02  Aligned_cols=40  Identities=10%  Similarity=-0.137  Sum_probs=28.6

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcCcccc-cCCCeeEEEEeCCCCC
Q 037564            4 CKPILDSSSFDKTAFTADTYNNNHVK-FYFDCHAWVRVSISYD   45 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~~~~~-~~f~~~~wv~~~~~~~   45 (93)
                      .+.+.|++|+|||.||+.+..  .+. ......+-+.++....
T Consensus         5 ~~ll~GpsGvGKT~la~~la~--~l~~~~~~~~~~~d~s~~~~   45 (171)
T PF07724_consen    5 NFLLAGPSGVGKTELAKALAE--LLFVGSERPLIRIDMSEYSE   45 (171)
T ss_dssp             EEEEESSTTSSHHHHHHHHHH--HHT-SSCCEEEEEEGGGHCS
T ss_pred             EEEEECCCCCCHHHHHHHHHH--HhccCCccchHHHhhhcccc
Confidence            567899999999999999888  444 3444555666654333

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=97.78  E-value=2.5e-05  Score=46.09  Aligned_cols=22  Identities=14%  Similarity=0.134  Sum_probs=20.1

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|.|++|+|||||++.+..
T Consensus        27 e~~~i~G~nGsGKSTLl~~l~G   48 (222)
T cd03224          27 EIVALLGRNGAGKTTLLKTIMG   48 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHhC
Confidence            4789999999999999998876

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family

Probab=97.77  E-value=0.00012  Score=43.39  Aligned_cols=48  Identities=8%  Similarity=-0.016  Sum_probs=32.0

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHH
Q 037564            2 SGCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDI   53 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i   53 (93)
                      ..++.|.|.+|+|||++|.+++.  .....=..+.|++...  ++.++.+.+
T Consensus        16 g~~~li~G~~G~GKt~~~~~~~~--~~~~~g~~~~y~s~e~--~~~~l~~~~   63 (224)
T TIGR03880        16 GHVIVVIGEYGTGKTTFSLQFLY--QGLKNGEKAMYISLEE--REERILGYA   63 (224)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH--HHHhCCCeEEEEECCC--CHHHHHHHH
Confidence            35788999999999999998876  2222224566777655  344444443

This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=97.77  E-value=2.7e-05  Score=46.10  Aligned_cols=23  Identities=9%  Similarity=0.055  Sum_probs=20.7

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .+++|.|++|.|||||.+.+...
T Consensus        32 e~~~i~G~nGsGKSTLl~~l~G~   54 (228)
T cd03257          32 ETLGLVGESGSGKSTLARAILGL   54 (228)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            47899999999999999998863

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=97.77  E-value=2.5e-05  Score=45.94  Aligned_cols=23  Identities=13%  Similarity=0.033  Sum_probs=20.5

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .+++|.|++|+|||||++.+..-
T Consensus        24 e~~~i~G~nGsGKSTLl~~l~G~   46 (214)
T cd03297          24 EVTGIFGASGAGKSTLLRCIAGL   46 (214)
T ss_pred             eeEEEECCCCCCHHHHHHHHhCC
Confidence            47899999999999999998863

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09302 circadian clock protein KaiC; Reviewed

Probab=97.77  E-value=0.00031  Score=46.45  Aligned_cols=86  Identities=8%  Similarity=-0.056  Sum_probs=49.8

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHHHHhhCCCCCC-------cc---ccC-CCH
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSVMPPSRV-------SV---IIG-EDY   71 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~il~~l~~~~~~-------~~---~~~-~~~   71 (93)
                      .++.|.|.+|+|||+++.+++.  .....-..++|++...+  ..++.+.+ +.++.+...       .+   ... .+.
T Consensus       274 ~~~li~G~~G~GKT~l~~~~~~--~~~~~g~~~~yis~e~~--~~~i~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~~~  348 (509)
T PRK09302        274 SIILVSGATGTGKTLLASKFAE--AACRRGERCLLFAFEES--RAQLIRNA-RSWGIDLEKMEEKGLLKIICARPESYGL  348 (509)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHH--HHHhCCCcEEEEEecCC--HHHHHHHH-HHcCCChHHHhhcCCceeecCCcccCCH
Confidence            4778899999999999999887  33333456778876653  44554443 333321000       00   001 344


Q ss_pred             HHHHHHHHHhcCC-CeEEEEeeC
Q 037564           72 QLKKSILRDYLTN-KKYFIVLDD   93 (93)
Q Consensus        72 ~~l~~~l~~~L~~-kr~LlVlDD   93 (93)
                      +.....+.+.+.. +.-++|+|.
T Consensus       349 ~~~~~~i~~~i~~~~~~~vVIDs  371 (509)
T PRK09302        349 EDHLIIIKREIEEFKPSRVAIDP  371 (509)
T ss_pred             HHHHHHHHHHHHHcCCCEEEEcC
Confidence            5666666666533 334778884

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=97.77  E-value=2.5e-05  Score=43.62  Aligned_cols=21  Identities=10%  Similarity=0.071  Sum_probs=19.1

Q ss_pred             eeEEcCCCCcHHHHHHHHhcC
Q 037564            5 KPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      |.++|.+|+|||||..++...
T Consensus         3 i~~vG~~~vGKTsli~~l~~~   23 (168)
T cd04119           3 VISMGNSGVGKSCIIKRYCEG   23 (168)
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            789999999999999998874

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>PLN02318 phosphoribulokinase/uridine kinase

Probab=97.77  E-value=2.3e-05  Score=52.57  Aligned_cols=22  Identities=27%  Similarity=0.200  Sum_probs=20.4

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+|+|.|++|+||||||+.+..
T Consensus        66 iIIGIaGpSGSGKTTLAk~Lag   87 (656)
T PLN02318         66 ILVGVAGPSGAGKTVFTEKVLN   87 (656)
T ss_pred             EEEEEECCCCCcHHHHHHHHHh
Confidence            4889999999999999999987

>cd04155 Arl3 Arl3 subfamily

Probab=97.77  E-value=2.5e-05  Score=44.10  Aligned_cols=22  Identities=18%  Similarity=0.054  Sum_probs=20.1

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .|+|+|.+|+|||||.+.+...
T Consensus        16 ~v~i~G~~g~GKStLl~~l~~~   37 (173)
T cd04155          16 RILILGLDNAGKTTILKQLASE   37 (173)
T ss_pred             EEEEEccCCCCHHHHHHHHhcC
Confidence            5899999999999999999874

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=97.76  E-value=2.8e-05  Score=45.43  Aligned_cols=21  Identities=14%  Similarity=0.196  Sum_probs=18.9

Q ss_pred             ceeeEEcCCCCcHHHHHHHHh
Q 037564            3 GCKPILDSSSFDKTAFTADTY   23 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~   23 (93)
                      ++++|+|++|+|||||++.++
T Consensus        23 g~~~i~G~nGsGKStll~al~   43 (197)
T cd03278          23 GLTAIVGPNGSGKSNIIDAIR   43 (197)
T ss_pred             CcEEEECCCCCCHHHHHHHHH
Confidence            478999999999999999876

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase

Probab=97.76  E-value=5.9e-05  Score=45.70  Aligned_cols=22  Identities=14%  Similarity=0.078  Sum_probs=19.3

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ++|+|.|-||+||||++..+..
T Consensus         2 ~~iav~~KGGvGKTT~~~nLA~   23 (270)
T cd02040           2 RQIAIYGKGGIGKSTTTQNLSA   23 (270)
T ss_pred             cEEEEEeCCcCCHHHHHHHHHH
Confidence            5688889999999999988777

Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.

>cd04159 Arl10_like Arl10-like subfamily

Probab=97.76  E-value=2.6e-05  Score=43.00  Aligned_cols=21  Identities=10%  Similarity=0.036  Sum_probs=19.4

Q ss_pred             eeEEcCCCCcHHHHHHHHhcC
Q 037564            5 KPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      |+|+|.+|+|||||.+.+...
T Consensus         2 i~i~G~~~~GKssl~~~l~~~   22 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGG   22 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccC
Confidence            789999999999999999875

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase

Probab=97.76  E-value=2.8e-05  Score=45.76  Aligned_cols=22  Identities=9%  Similarity=0.063  Sum_probs=19.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      |+|+|.|-||+||||++..+..
T Consensus         1 ~~iav~gKGGvGKTt~~~nLA~   22 (212)
T cd02117           1 RQIAIYGKGGIGKSTTSQNLSA   22 (212)
T ss_pred             CEEEEECCCcCcHHHHHHHHHH
Confidence            5799999999999998877666

Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.76  E-value=1.3e-05  Score=55.74  Aligned_cols=22  Identities=9%  Similarity=-0.007  Sum_probs=19.3

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .+.++|+.|+||||+|+.+++.
T Consensus        40 AyLFtGPpGtGKTTLARiLAk~   61 (944)
T PRK14949         40 AYLFTGTRGVGKTSLARLFAKG   61 (944)
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            4568999999999999999873

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=97.76  E-value=3e-05  Score=46.18  Aligned_cols=23  Identities=9%  Similarity=0.013  Sum_probs=20.7

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .+++|.|++|+|||||++.+..-
T Consensus        12 e~~~i~G~nGsGKSTLl~~l~Gl   34 (230)
T TIGR01184        12 EFISLIGHSGCGKSTLLNLISGL   34 (230)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            47899999999999999998863

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs)

Probab=97.76  E-value=2.3e-05  Score=45.34  Aligned_cols=21  Identities=5%  Similarity=0.025  Sum_probs=19.2

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +|+|.|+.|+||||+++.+..
T Consensus         1 ~I~ieG~~GsGKSTl~~~L~~   21 (193)
T cd01673           1 VIVVEGNIGAGKSTLAKELAE   21 (193)
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999998876

This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=97.76  E-value=2.6e-05  Score=51.60  Aligned_cols=22  Identities=9%  Similarity=0.006  Sum_probs=20.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|+|.+|+||||||+.+..
T Consensus       318 E~lglVGeSGsGKSTlar~i~g  339 (539)
T COG1123         318 ETLGLVGESGSGKSTLARILAG  339 (539)
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            4789999999999999999886

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.76  E-value=3.1e-05  Score=45.31  Aligned_cols=23  Identities=13%  Similarity=-0.090  Sum_probs=20.8

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .+++|.|++|+|||||.+.++..
T Consensus        28 e~~~l~G~nGsGKSTLl~~l~G~   50 (204)
T PRK13538         28 ELVQIEGPNGAGKTSLLRILAGL   50 (204)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            47899999999999999998874

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=97.76  E-value=3e-05  Score=46.16  Aligned_cols=23  Identities=9%  Similarity=-0.022  Sum_probs=20.9

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .+++|.|++|+|||||++.++.-
T Consensus        13 e~~~i~G~nGsGKSTLl~~l~Gl   35 (230)
T TIGR02770        13 EVLALVGESGSGKSLTCLAILGL   35 (230)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            57899999999999999998874

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=97.75  E-value=3.1e-05  Score=45.95  Aligned_cols=23  Identities=17%  Similarity=0.030  Sum_probs=20.7

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .+++|.|++|+|||||++.+...
T Consensus        34 e~~~i~G~nGsGKSTLl~~l~G~   56 (225)
T PRK10247         34 EFKLITGPSGCGKSTLLKIVASL   56 (225)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcc
Confidence            47899999999999999998874

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=97.75  E-value=3.1e-05  Score=45.42  Aligned_cols=23  Identities=13%  Similarity=-0.039  Sum_probs=20.8

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .+++|.|++|+|||||.+.+..-
T Consensus        27 ~~~~l~G~nGsGKSTLl~~l~G~   49 (213)
T cd03262          27 EVVVIIGPSGSGKSTLLRCINLL   49 (213)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            57899999999999999998873

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=97.75  E-value=2.7e-05  Score=43.56  Aligned_cols=22  Identities=23%  Similarity=0.202  Sum_probs=19.2

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.+.|.+|+|||||+.++.+.
T Consensus         2 ki~v~G~~~~GKTsli~~~~~~   23 (164)
T smart00173        2 KLVVLGSGGVGKSALTIQFVQG   23 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3788999999999999998764

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=97.75  E-value=3.4e-05  Score=44.40  Aligned_cols=23  Identities=9%  Similarity=-0.106  Sum_probs=20.7

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ..++.+.|.+|+||||+|+.+..
T Consensus        18 ~~~i~i~G~~GsGKstla~~l~~   40 (184)
T TIGR00455        18 GVVIWLTGLSGSGKSTIANALEK   40 (184)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35889999999999999999887

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=97.75  E-value=2.9e-05  Score=46.28  Aligned_cols=23  Identities=9%  Similarity=-0.013  Sum_probs=20.6

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .+++|.|++|+|||||++.++.-
T Consensus        27 e~~~l~G~nGsGKSTLl~~l~Gl   49 (236)
T cd03219          27 EIHGLIGPNGAGKTTLFNLISGF   49 (236)
T ss_pred             cEEEEECCCCCCHHHHHHHHcCC
Confidence            47899999999999999998863

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>TIGR00764 lon_rel lon-related putative ATP-dependent protease

Probab=97.75  E-value=0.00011  Score=49.62  Aligned_cols=53  Identities=2%  Similarity=-0.165  Sum_probs=35.3

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcCcccccC-CCeeEEEEeCCCCCHHHHHHHHHHhhCC
Q 037564            4 CKPILDSSSFDKTAFTADTYNNNHVKFY-FDCHAWVRVSISYDFRMVLDDIIKSVMP   59 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~~~~~~~-f~~~~wv~~~~~~~~~~ll~~il~~l~~   59 (93)
                      -+.++|++|+||||+|+.+.+  .+... |...+++. ....+...+++.++..++.
T Consensus        39 ~~ll~G~pG~GKT~la~~la~--~l~~~~~~~~~~~~-n~~~~~~~~~~~v~~~~g~   92 (608)
T TIGR00764        39 NVLLIGEPGVGKSMLAKAMAE--LLPDEELEDILVYP-NPEDPNMPRIVEVPAGEGR   92 (608)
T ss_pred             CEEEECCCCCCHHHHHHHHHH--HcCchhheeEEEEe-CCCCCchHHHHHHHHhhch
Confidence            356899999999999999998  55433 33333332 3334556677777776663

Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.

>PRK04196 V-type ATP synthase subunit B; Provisional

Probab=97.75  E-value=0.00013  Score=47.81  Aligned_cols=90  Identities=14%  Similarity=0.205  Sum_probs=52.7

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccc---cCCCeeEEEEeCCC-CCHHHHHHHHHHhhCCCCCCcc-c-cCCC------
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVK---FYFDCHAWVRVSIS-YDFRMVLDDIIKSVMPPSRVSV-I-IGED------   70 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~---~~f~~~~wv~~~~~-~~~~~ll~~il~~l~~~~~~~~-~-~~~~------   70 (93)
                      .-++|.|.+|+|||+|+..+.++....   ..+ .++++.+.+. ....++++.+.+.-......-. . .+.+      
T Consensus       144 QR~gIfgg~G~GKs~L~~~ia~~~~~d~~~~~~-v~V~~~iGeRgrEv~e~~~~~~~~~~l~rtvvV~atsd~p~~~R~~  222 (460)
T PRK04196        144 QKLPIFSGSGLPHNELAAQIARQAKVLGEEENF-AVVFAAMGITFEEANFFMEDFEETGALERSVVFLNLADDPAIERIL  222 (460)
T ss_pred             CEEEeeCCCCCCccHHHHHHHHhhhhccCCCce-EEEEEEeccccHHHHHHHHHHHhcCCcceEEEEEEcCCCCHHHHHH
Confidence            457899999999999999988853321   111 5667777554 4556677777654211110000 0 0011      


Q ss_pred             HHHHHHHHHHhcC---CCeEEEEeeC
Q 037564           71 YQLKKSILRDYLT---NKKYFIVLDD   93 (93)
Q Consensus        71 ~~~l~~~l~~~L~---~kr~LlVlDD   93 (93)
                      .--..-.+-++++   ++++|+++||
T Consensus       223 a~~~a~tiAEyfr~d~G~~VLli~Ds  248 (460)
T PRK04196        223 TPRMALTAAEYLAFEKGMHVLVILTD  248 (460)
T ss_pred             HHHHHHHHHHHHHHhcCCcEEEEEcC
Confidence            1122234667765   4899999997

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=97.75  E-value=3.2e-05  Score=46.33  Aligned_cols=23  Identities=13%  Similarity=-0.057  Sum_probs=20.7

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .+++|.|++|.|||||++.++..
T Consensus        28 e~~~i~G~nGsGKSTLl~~l~G~   50 (242)
T cd03295          28 EFLVLIGPSGSGKTTTMKMINRL   50 (242)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            57899999999999999998863

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional

Probab=97.75  E-value=2.9e-05  Score=47.89  Aligned_cols=22  Identities=9%  Similarity=-0.174  Sum_probs=19.7

Q ss_pred             CceeeEEcCCCCcHHHHHHHHh
Q 037564            2 SGCKPILDSSSFDKTAFTADTY   23 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~   23 (93)
                      ..+|.|.|++|+||||+++.+.
T Consensus         6 ~~~i~i~G~~GsGKtt~~~~l~   27 (288)
T PRK05416          6 MRLVIVTGLSGAGKSVALRALE   27 (288)
T ss_pred             ceEEEEECCCCCcHHHHHHHHH
Confidence            3589999999999999999885

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=97.75  E-value=3.2e-05  Score=45.98  Aligned_cols=23  Identities=13%  Similarity=-0.090  Sum_probs=20.6

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .+++|.|++|+|||||.+.+..-
T Consensus        27 e~~~l~G~nGsGKSTLl~~l~Gl   49 (232)
T cd03218          27 EIVGLLGPNGAGKTTTFYMIVGL   49 (232)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            47899999999999999998863

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>PRK10908 cell division protein FtsE; Provisional

Probab=97.74  E-value=3.3e-05  Score=45.69  Aligned_cols=23  Identities=9%  Similarity=-0.084  Sum_probs=20.7

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .+++|.|++|+|||||.+.++..
T Consensus        29 e~~~i~G~nGsGKSTLl~~l~G~   51 (222)
T PRK10908         29 EMAFLTGHSGAGKSTLLKLICGI   51 (222)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            57899999999999999998864

>cd01862 Rab7 Rab7 subfamily

Probab=97.74  E-value=3e-05  Score=43.62  Aligned_cols=21  Identities=29%  Similarity=0.279  Sum_probs=19.1

Q ss_pred             eeEEcCCCCcHHHHHHHHhcC
Q 037564            5 KPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      |++.|.+|+|||||+..+.+.
T Consensus         3 i~viG~~~~GKSsl~~~l~~~   23 (172)
T cd01862           3 VIILGDSGVGKTSLMNQYVNK   23 (172)
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            789999999999999998765

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>PRK00279 adk adenylate kinase; Reviewed

Probab=97.74  E-value=2.5e-05  Score=46.08  Aligned_cols=21  Identities=10%  Similarity=-0.110  Sum_probs=19.1

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .|.|.|++|+||||+|+.+..
T Consensus         2 ~I~v~G~pGsGKsT~a~~la~   22 (215)
T PRK00279          2 RLILLGPPGAGKGTQAKFIAE   22 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999998876

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=97.74  E-value=8.6e-05  Score=51.82  Aligned_cols=20  Identities=15%  Similarity=0.038  Sum_probs=18.3

Q ss_pred             eeEEcCCCCcHHHHHHHHhc
Q 037564            5 KPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +.++|++|+||||+|+.+..
T Consensus       211 ~lLvG~pGvGKTal~~~La~  230 (852)
T TIGR03345       211 PILTGEAGVGKTAVVEGLAL  230 (852)
T ss_pred             eeEECCCCCCHHHHHHHHHH
Confidence            46899999999999999887

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=97.74  E-value=3.3e-05  Score=45.33  Aligned_cols=23  Identities=17%  Similarity=-0.028  Sum_probs=20.7

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .+++|.|++|+|||||++.+...
T Consensus        27 e~~~l~G~nGsGKSTLl~~l~G~   49 (213)
T cd03301          27 EFVVLLGPSGCGKTTTLRMIAGL   49 (213)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            47899999999999999998874

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=97.74  E-value=3.3e-05  Score=46.26  Aligned_cols=23  Identities=13%  Similarity=-0.044  Sum_probs=20.8

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .+++|.|++|+|||||++.++..
T Consensus        29 e~~~i~G~nGsGKSTLl~~l~G~   51 (242)
T PRK11124         29 ETLVLLGPSGAGKSSLLRVLNLL   51 (242)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            47899999999999999998874

>PLN02165 adenylate isopentenyltransferase

Probab=97.74  E-value=2.9e-05  Score=48.70  Aligned_cols=22  Identities=14%  Similarity=0.184  Sum_probs=20.5

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+|+|+|+.|+|||+||..++.
T Consensus        44 ~iivIiGPTGSGKStLA~~LA~   65 (334)
T PLN02165         44 KVVVIMGATGSGKSRLSVDLAT   65 (334)
T ss_pred             CEEEEECCCCCcHHHHHHHHHH
Confidence            5899999999999999999887

>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit

Probab=97.74  E-value=9.4e-05  Score=47.87  Aligned_cols=28  Identities=11%  Similarity=0.061  Sum_probs=22.5

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYF   32 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f   32 (93)
                      +-|.++|++|+|||++|+.+..  .+...|
T Consensus        48 ~~ILLiGppG~GKT~lAraLA~--~l~~~f   75 (441)
T TIGR00390        48 KNILMIGPTGVGKTEIARRLAK--LANAPF   75 (441)
T ss_pred             ceEEEECCCCCCHHHHHHHHHH--HhCCeE
Confidence            4578999999999999999988  444333

This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=97.74  E-value=5.6e-05  Score=43.53  Aligned_cols=21  Identities=14%  Similarity=0.050  Sum_probs=19.7

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+.|.|++|.||+||.+.++.
T Consensus        31 ~iaitGPSG~GKStllk~va~   51 (223)
T COG4619          31 FIAITGPSGCGKSTLLKIVAS   51 (223)
T ss_pred             eEEEeCCCCccHHHHHHHHHh
Confidence            578999999999999999987

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.74  E-value=2.4e-05  Score=49.45  Aligned_cols=21  Identities=14%  Similarity=0.109  Sum_probs=19.2

Q ss_pred             eeEEcCCCCcHHHHHHHHhcC
Q 037564            5 KPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      |.++|++|.|||-||+++++.
T Consensus       188 VLLYGPPGTGKTLLAkAVA~~  208 (406)
T COG1222         188 VLLYGPPGTGKTLLAKAVANQ  208 (406)
T ss_pred             eEeeCCCCCcHHHHHHHHHhc
Confidence            568999999999999999993

>PRK02496 adk adenylate kinase; Provisional

Probab=97.74  E-value=2.6e-05  Score=44.84  Aligned_cols=20  Identities=10%  Similarity=-0.085  Sum_probs=18.4

Q ss_pred             eeEEcCCCCcHHHHHHHHhc
Q 037564            5 KPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +.|.|++|+||||+|+.+..
T Consensus         4 i~i~G~pGsGKst~a~~la~   23 (184)
T PRK02496          4 LIFLGPPGAGKGTQAVVLAE   23 (184)
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78899999999999999876

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=97.74  E-value=0.0001  Score=51.44  Aligned_cols=21  Identities=14%  Similarity=0.039  Sum_probs=18.8

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ++.++|++|+|||.||+.+..
T Consensus       598 ~~lf~Gp~GvGKT~lA~~La~  618 (852)
T TIGR03345       598 VFLLVGPSGVGKTETALALAE  618 (852)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            578899999999999998876

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=97.74  E-value=3.4e-05  Score=45.14  Aligned_cols=23  Identities=13%  Similarity=-0.068  Sum_probs=20.6

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .+++|.|++|+|||||.+.+...
T Consensus        27 ~~~~i~G~nGsGKSTLl~~l~Gl   49 (208)
T cd03268          27 EIYGFLGPNGAGKTTTMKIILGL   49 (208)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            57899999999999999998863

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.74  E-value=0.00024  Score=45.72  Aligned_cols=21  Identities=10%  Similarity=-0.186  Sum_probs=18.3

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+.++|++|+||||+|+.+.+
T Consensus        40 a~lf~Gp~G~GKtt~A~~~a~   60 (397)
T PRK14955         40 GYIFSGLRGVGKTTAARVFAK   60 (397)
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            356899999999999998776

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.73  E-value=3.4e-05  Score=46.22  Aligned_cols=23  Identities=13%  Similarity=0.027  Sum_probs=20.7

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .+++|.|++|+|||||++.++.-
T Consensus        30 e~~~i~G~nGsGKSTLl~~l~Gl   52 (241)
T PRK14250         30 AIYTIVGPSGAGKSTLIKLINRL   52 (241)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            47899999999999999998873

>PRK00440 rfc replication factor C small subunit; Reviewed

Probab=97.73  E-value=0.00026  Score=43.77  Aligned_cols=21  Identities=10%  Similarity=-0.105  Sum_probs=19.2

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+.++|++|+||||+++.+++
T Consensus        40 ~~ll~G~~G~GKt~~~~~l~~   60 (319)
T PRK00440         40 HLLFAGPPGTGKTTAALALAR   60 (319)
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            468899999999999999987

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=97.73  E-value=0.00013  Score=50.12  Aligned_cols=21  Identities=10%  Similarity=0.050  Sum_probs=19.1

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+.++|++|+|||+||+.++.
T Consensus       486 ~~lf~Gp~GvGKT~lA~~la~  506 (731)
T TIGR02639       486 SFLFTGPTGVGKTELAKQLAE  506 (731)
T ss_pred             eEEEECCCCccHHHHHHHHHH
Confidence            467899999999999999988

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=97.73  E-value=3.4e-05  Score=46.13  Aligned_cols=23  Identities=9%  Similarity=0.177  Sum_probs=20.8

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .+++|.|++|+|||||.+.+...
T Consensus        27 e~~~i~G~nGsGKSTLl~~l~Gl   49 (243)
T TIGR01978        27 EIHAIMGPNGSGKSTLSKTIAGH   49 (243)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            47899999999999999998874

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.73  E-value=3.6e-05  Score=45.13  Aligned_cols=23  Identities=9%  Similarity=-0.093  Sum_probs=20.9

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .+++|.|.+|.|||||++.+...
T Consensus        29 e~~~i~G~nGsGKSTLl~~l~G~   51 (207)
T PRK13539         29 EALVLTGPNGSGKTTLLRLIAGL   51 (207)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            57899999999999999998874

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.73  E-value=3.5e-05  Score=46.36  Aligned_cols=23  Identities=9%  Similarity=0.008  Sum_probs=20.6

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .+++|.|.+|+|||||++.+...
T Consensus        30 e~~~i~G~nGsGKSTLl~~i~G~   52 (250)
T PRK14247         30 TITALMGPSGSGKSTLLRVFNRL   52 (250)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcc
Confidence            47899999999999999998863

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=97.73  E-value=3.5e-05  Score=45.37  Aligned_cols=23  Identities=13%  Similarity=-0.038  Sum_probs=20.7

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .+++|.|.+|+|||||.+.+..-
T Consensus        32 e~~~i~G~nGsGKSTLl~~l~Gl   54 (218)
T cd03266          32 EVTGLLGPNGAGKTTTLRMLAGL   54 (218)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            47899999999999999998873

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>PRK09281 F0F1 ATP synthase subunit alpha; Validated

Probab=97.73  E-value=0.00023  Score=47.04  Aligned_cols=87  Identities=17%  Similarity=0.150  Sum_probs=46.5

Q ss_pred             ceeeEEcCCCCcHHHHHH-HHhcCcccccCCCe-eEEEEeCCCC-CHHHHHHHHHHhhCCCCCCcc-cc-C-CCHHHH--
Q 037564            3 GCKPILDSSSFDKTAFTA-DTYNNNHVKFYFDC-HAWVRVSISY-DFRMVLDDIIKSVMPPSRVSV-II-G-EDYQLK--   74 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~-~~~~~~~~~~~f~~-~~wv~~~~~~-~~~~ll~~il~~l~~~~~~~~-~~-~-~~~~~l--   74 (93)
                      .-++|.|.+|+|||+||. .+.+  +.  .-+. ++++.+.+.. ...++.+.+.+.-......-. .. + ......  
T Consensus       163 Qr~~Ifg~~g~GKt~lal~~i~~--~~--~~dv~~V~~~IGer~~ev~e~~~~~~~~~~l~~tvvv~atsd~p~~~r~~a  238 (502)
T PRK09281        163 QRELIIGDRQTGKTAIAIDTIIN--QK--GKDVICIYVAIGQKASTVAQVVRKLEEHGAMEYTIVVAATASDPAPLQYLA  238 (502)
T ss_pred             cEEEeecCCCCCchHHHHHHHHH--hc--CCCeEEEEEEecCChHHHHHHHHHHhhcCCccceEEEEeCCCCCHHHHHHH
Confidence            457899999999999954 4444  21  2234 4777776654 445566665543211110000 00 0 111111  


Q ss_pred             ---HHHHHHhc--CCCeEEEEeeC
Q 037564           75 ---KSILRDYL--TNKKYFIVLDD   93 (93)
Q Consensus        75 ---~~~l~~~L--~~kr~LlVlDD   93 (93)
                         .-.+-+++  +++++|+|+||
T Consensus       239 ~~~a~tiAEyfrd~G~~VLli~Dd  262 (502)
T PRK09281        239 PYAGCAMGEYFMDNGKDALIVYDD  262 (502)
T ss_pred             HHHHHHHHHHHHHcCCCEEEEecC
Confidence               12234444  47899999997

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=97.73  E-value=3.7e-05  Score=44.43  Aligned_cols=22  Identities=14%  Similarity=-0.011  Sum_probs=19.9

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ..+.|.|+.|+||||+++.+..
T Consensus        26 ~~i~I~G~tGSGKTTll~aL~~   47 (186)
T cd01130          26 KNILISGGTGSGKTTLLNALLA   47 (186)
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            5789999999999999998876

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=97.72  E-value=3.1e-05  Score=48.91  Aligned_cols=23  Identities=17%  Similarity=0.059  Sum_probs=20.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -.+++.|++|+|||||.+.++.-
T Consensus        32 ef~~lLGPSGcGKTTlLR~IAGf   54 (352)
T COG3842          32 EFVTLLGPSGCGKTTLLRMIAGF   54 (352)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            36789999999999999998863

>cd00876 Ras Ras family

Probab=97.72  E-value=3.3e-05  Score=42.79  Aligned_cols=21  Identities=19%  Similarity=0.230  Sum_probs=18.9

Q ss_pred             eeEEcCCCCcHHHHHHHHhcC
Q 037564            5 KPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      |.|+|++|+|||||...+...
T Consensus         2 i~i~G~~~~GKTsli~~l~~~   22 (160)
T cd00876           2 VVVLGAGGVGKSAITIQFVKG   22 (160)
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            689999999999999998753

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=97.72  E-value=3.7e-05  Score=46.65  Aligned_cols=23  Identities=9%  Similarity=-0.015  Sum_probs=20.8

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .+++|.|++|+|||||.+.+..-
T Consensus        39 e~~~I~G~NGsGKSTLlk~l~Gl   61 (257)
T PRK11247         39 QFVAVVGRSGCGKSTLLRLLAGL   61 (257)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            47899999999999999998873

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=97.72  E-value=7.8e-05  Score=41.53  Aligned_cols=22  Identities=14%  Similarity=0.098  Sum_probs=19.6

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.+.|..|+|||||++.+...
T Consensus         3 rimliG~~g~GKTTL~q~L~~~   24 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGE   24 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCC
Confidence            4778999999999999999874

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=97.72  E-value=3.7e-05  Score=44.59  Aligned_cols=22  Identities=14%  Similarity=0.075  Sum_probs=20.3

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|.|++|+|||||.+.+..
T Consensus        34 e~~~l~G~nGsGKSTLl~~l~G   55 (192)
T cd03232          34 TLTALMGESGAGKTTLLDVLAG   55 (192)
T ss_pred             cEEEEECCCCCCHHHHHHHHhC
Confidence            4789999999999999999986

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=97.72  E-value=3.8e-05  Score=45.94  Aligned_cols=23  Identities=13%  Similarity=0.016  Sum_probs=20.7

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .+++|.|++|+|||||++.+...
T Consensus        28 e~~~l~G~nGsGKSTLl~~l~G~   50 (240)
T PRK09493         28 EVVVIIGPSGSGKSTLLRCINKL   50 (240)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            47899999999999999998864

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=97.72  E-value=3.1e-05  Score=45.43  Aligned_cols=22  Identities=14%  Similarity=0.104  Sum_probs=20.4

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ++|+++|..|+|||||..++.+
T Consensus        23 ~~i~~~G~~gsGKTTli~~l~~   44 (207)
T TIGR00073        23 VVLNFMSSPGSGKTTLIEKLID   44 (207)
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999999887

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.71  E-value=0.00014  Score=43.78  Aligned_cols=22  Identities=14%  Similarity=0.126  Sum_probs=19.9

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      -.|+|.|++|.|||||.+.+..
T Consensus        31 E~VaiIG~SGaGKSTLLR~lng   52 (258)
T COG3638          31 EMVAIIGPSGAGKSTLLRSLNG   52 (258)
T ss_pred             cEEEEECCCCCcHHHHHHHHhc
Confidence            3689999999999999999876

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=97.71  E-value=3.8e-05  Score=46.24  Aligned_cols=22  Identities=14%  Similarity=0.187  Sum_probs=20.1

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|.|++|+|||||.+.+..
T Consensus        33 e~~~i~G~nGsGKSTLl~~l~G   54 (253)
T PRK14242         33 QVTALIGPSGCGKSTFLRCLNR   54 (253)
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            4789999999999999999884

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=97.71  E-value=3.4e-05  Score=39.27  Aligned_cols=21  Identities=14%  Similarity=0.142  Sum_probs=18.9

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ++.+.|.+|+||||++..+..
T Consensus         1 ~~~~~g~~G~Gktt~~~~l~~   21 (99)
T cd01983           1 VIVVTGKGGVGKTTLAANLAA   21 (99)
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            478899999999999999887

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>COG4639 Predicted kinase [General function prediction only]

Probab=97.71  E-value=9.1e-05  Score=41.80  Aligned_cols=24  Identities=13%  Similarity=0.160  Sum_probs=20.4

Q ss_pred             CCceeeEEcCCCCcHHHHHHHHhc
Q 037564            1 FSGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         1 ~~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      |.+++.+.|.+|+||+|.|+.-+.
T Consensus         1 ~~~LvvL~G~~~sGKsT~ak~n~~   24 (168)
T COG4639           1 MRILVVLRGASGSGKSTFAKENFL   24 (168)
T ss_pred             CceEEEEecCCCCchhHHHHHhCC
Confidence            457889999999999999998444

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=97.71  E-value=3.2e-05  Score=47.50  Aligned_cols=30  Identities=13%  Similarity=0.020  Sum_probs=23.5

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCCCe
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDC   34 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~   34 (93)
                      .+|.++||+|+||||..+++..  .++..+.+
T Consensus        20 ~~ilVvGMAGSGKTTF~QrL~~--hl~~~~~p   49 (366)
T KOG1532|consen   20 VIILVVGMAGSGKTTFMQRLNS--HLHAKKTP   49 (366)
T ss_pred             cEEEEEecCCCCchhHHHHHHH--HHhhccCC
Confidence            3677889999999999999988  45544443

>TIGR00101 ureG urease accessory protein UreG

Probab=97.71  E-value=5.4e-05  Score=44.34  Aligned_cols=21  Identities=14%  Similarity=-0.015  Sum_probs=19.7

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .|+|.|+.|+|||||.+.+.+
T Consensus         3 ~i~i~G~~GsGKTTll~~l~~   23 (199)
T TIGR00101         3 KIGVAGPVGSGKTALIEALTR   23 (199)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999987

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=97.71  E-value=3.5e-05  Score=42.82  Aligned_cols=21  Identities=19%  Similarity=0.278  Sum_probs=18.8

Q ss_pred             eeEEcCCCCcHHHHHHHHhcC
Q 037564            5 KPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      |.+.|.+|+|||||..++.+.
T Consensus         4 i~iiG~~~vGKTsl~~~~~~~   24 (162)
T cd04138           4 LVVVGAGGVGKSALTIQLIQN   24 (162)
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            678999999999999998764

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>PRK07429 phosphoribulokinase; Provisional

Probab=97.71  E-value=3.5e-05  Score=48.36  Aligned_cols=22  Identities=18%  Similarity=0.095  Sum_probs=20.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      -+|+|.|.+|+||||+++.+..
T Consensus         9 ~IIgI~G~SGSGKSTla~~L~~   30 (327)
T PRK07429          9 VLLGVAGDSGCGKTTFLRGLAD   30 (327)
T ss_pred             EEEEEECCCCCCHHHHHHHHHh
Confidence            3789999999999999999887

>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]

Probab=97.71  E-value=0.00039  Score=42.95  Aligned_cols=79  Identities=13%  Similarity=0.074  Sum_probs=52.8

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEE-EEeCCCCCHHHHHHHHHHhhCCCCCCccccCCCHHHHHHHHHH
Q 037564            2 SGCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAW-VRVSISYDFRMVLDDIIKSVMPPSRVSVIIGEDYQLKKSILRD   80 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~w-v~~~~~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~~l~~   80 (93)
                      +....+.|++|+|||+-++.+++  .    . +..| +..++.++...++..+.........      .+..+....+..
T Consensus        94 g~l~~vyg~~g~gKt~a~~~y~~--s----~-p~~~l~~~~p~~~a~~~i~~i~~~~~~~~~------~~~~d~~~~~~~  160 (297)
T COG2842          94 GSLVVVYGYAGLGKTQAAKNYAP--S----N-PNALLIEADPSYTALVLILIICAAAFGATD------GTINDLTERLMI  160 (297)
T ss_pred             CceEEEeccccchhHHHHHhhcc--c----C-ccceeecCChhhHHHHHHHHHHHHHhcccc------hhHHHHHHHHHH
Confidence            34678899999999999999988  2    2 2333 3455566666666666655543322      456666777777


Q ss_pred             hcCCCeEEEEeeC
Q 037564           81 YLTNKKYFIVLDD   93 (93)
Q Consensus        81 ~L~~kr~LlVlDD   93 (93)
                      .+++..-+++.|+
T Consensus       161 ~l~~~~~~iivDE  173 (297)
T COG2842         161 RLRDTVRLIIVDE  173 (297)
T ss_pred             HHccCcceeeeeh
Confidence            7777766777763

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=97.71  E-value=4e-05  Score=45.71  Aligned_cols=23  Identities=17%  Similarity=0.029  Sum_probs=20.6

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .+++|.|++|+|||||++.+..-
T Consensus        29 e~~~i~G~nGsGKSTLl~~l~Gl   51 (237)
T cd03252          29 EVVGIVGRSGSGKSTLTKLIQRF   51 (237)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            47899999999999999998863

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=97.70  E-value=4.4e-05  Score=43.58  Aligned_cols=23  Identities=13%  Similarity=0.072  Sum_probs=20.7

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .+++|.|++|.|||||.+.+...
T Consensus        29 e~~~i~G~nGsGKStLl~~l~G~   51 (173)
T cd03246          29 ESLAIIGPSGSGKSTLARLILGL   51 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhc
Confidence            47899999999999999998873

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.70  E-value=3.9e-05  Score=47.19  Aligned_cols=23  Identities=9%  Similarity=0.049  Sum_probs=20.7

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .+++|.|++|+|||||++.+..-
T Consensus        38 e~~~l~G~nGsGKSTLl~~l~Gl   60 (289)
T PRK13645         38 KVTCVIGTTGSGKSTMIQLTNGL   60 (289)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            47899999999999999998763

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=97.70  E-value=8.5e-05  Score=44.53  Aligned_cols=21  Identities=19%  Similarity=0.083  Sum_probs=18.1

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .|+|+|-||+||||+|..++.
T Consensus         2 kIaI~GKGG~GKTtiaalll~   22 (255)
T COG3640           2 KIAITGKGGVGKTTIAALLLK   22 (255)
T ss_pred             eEEEecCCCccHHHHHHHHHH
Confidence            589999999999999887544

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=97.70  E-value=4e-05  Score=46.21  Aligned_cols=22  Identities=9%  Similarity=0.024  Sum_probs=19.6

Q ss_pred             CceeeEEcCCCCcHHHHHHHHh
Q 037564            2 SGCKPILDSSSFDKTAFTADTY   23 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~   23 (93)
                      .++.+|+|++|.|||||+..++
T Consensus        25 ~~~~~IvG~NGsGKStll~Ai~   46 (251)
T cd03273          25 PQFNAITGLNGSGKSNILDAIC   46 (251)
T ss_pred             CCeEEEECCCCCCHHHHHHHHH
Confidence            3678999999999999999876

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=97.70  E-value=4.1e-05  Score=45.30  Aligned_cols=23  Identities=22%  Similarity=0.393  Sum_probs=20.7

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .+++|.|.+|.|||||++.++..
T Consensus        35 e~~~l~G~nGsGKSTLl~~i~G~   57 (224)
T TIGR02324        35 ECVALSGPSGAGKSTLLKSLYAN   57 (224)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            47899999999999999998864

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>PRK13695 putative NTPase; Provisional

Probab=97.70  E-value=3.3e-05  Score=44.10  Aligned_cols=21  Identities=14%  Similarity=0.056  Sum_probs=18.8

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .|+|.|.+|+|||||++.++.
T Consensus         2 ~i~ltG~~G~GKTTll~~i~~   22 (174)
T PRK13695          2 KIGITGPPGVGKTTLVLKIAE   22 (174)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            378999999999999999876

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=97.70  E-value=4.1e-05  Score=46.34  Aligned_cols=22  Identities=5%  Similarity=0.135  Sum_probs=20.5

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|.|+.|.|||||.+.++.
T Consensus        31 ~~~~iiGPNGaGKSTLlK~iLG   52 (254)
T COG1121          31 EITALIGPNGAGKSTLLKAILG   52 (254)
T ss_pred             cEEEEECCCCCCHHHHHHHHhC
Confidence            4789999999999999999887

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=97.70  E-value=2.7e-05  Score=47.25  Aligned_cols=23  Identities=9%  Similarity=0.034  Sum_probs=19.9

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +.+|+|.|++|+||+||...+..
T Consensus        29 a~~iGiTG~PGaGKSTli~~l~~   51 (266)
T PF03308_consen   29 AHVIGITGPPGAGKSTLIDALIR   51 (266)
T ss_dssp             SEEEEEEE-TTSSHHHHHHHHHH
T ss_pred             ceEEEeeCCCCCcHHHHHHHHHH
Confidence            46899999999999999998877

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=97.70  E-value=4.2e-05  Score=45.96  Aligned_cols=22  Identities=9%  Similarity=0.167  Sum_probs=20.1

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|.|.+|+|||||++.+..
T Consensus        28 e~~~i~G~nGsGKSTLl~~l~G   49 (247)
T TIGR00972        28 QVTALIGPSGCGKSTLLRSLNR   49 (247)
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            4789999999999999999875

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=97.70  E-value=4.2e-05  Score=45.98  Aligned_cols=23  Identities=17%  Similarity=0.005  Sum_probs=20.5

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .+++|.|++|+|||||++.+...
T Consensus        30 e~~~i~G~nGsGKSTLl~~l~G~   52 (250)
T PRK11264         30 EVVAIIGPSGSGKTTLLRCINLL   52 (250)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            47899999999999999998763

>PRK13230 nitrogenase reductase-like protein; Reviewed

Probab=97.70  E-value=5.1e-05  Score=46.41  Aligned_cols=22  Identities=5%  Similarity=-0.064  Sum_probs=19.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ++|+|.|-||+||||++..+..
T Consensus         2 ~~i~~~gKGGVGKTT~a~nLA~   23 (279)
T PRK13230          2 RKFCFYGKGGIGKSTTVCNIAA   23 (279)
T ss_pred             cEEEEECCCCCcHHHHHHHHHH
Confidence            4688889999999998888776

>PRK14950 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.70  E-value=0.0001  Score=49.49  Aligned_cols=21  Identities=10%  Similarity=-0.080  Sum_probs=18.6

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+.++|+.|+||||+|+.+.+
T Consensus        40 a~Lf~Gp~G~GKTtlA~~lA~   60 (585)
T PRK14950         40 AYLFTGPRGVGKTSTARILAK   60 (585)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999876

>TIGR01618 phage_P_loop phage nucleotide-binding protein

Probab=97.70  E-value=3.4e-05  Score=45.87  Aligned_cols=22  Identities=14%  Similarity=-0.076  Sum_probs=19.4

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ..+.|+|.+|+||||+|+.+..
T Consensus        13 ~~~liyG~~G~GKtt~a~~~~~   34 (220)
T TIGR01618        13 NMYLIYGKPGTGKTSTIKYLPG   34 (220)
T ss_pred             cEEEEECCCCCCHHHHHHhcCC
Confidence            4688999999999999998864

This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=97.70  E-value=3.9e-05  Score=46.62  Aligned_cols=23  Identities=4%  Similarity=0.007  Sum_probs=20.7

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .+++|.|.+|+|||||++.++..
T Consensus        38 e~~~i~G~nGsGKSTLl~~l~Gl   60 (265)
T PRK10575         38 KVTGLIGHNGSGKSTLLKMLGRH   60 (265)
T ss_pred             CEEEEECCCCCCHHHHHHHHcCC
Confidence            47899999999999999998864

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=97.70  E-value=4.3e-05  Score=44.95  Aligned_cols=23  Identities=13%  Similarity=0.011  Sum_probs=20.9

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .+++|.|++|+|||||++.++..
T Consensus        25 e~~~i~G~nGsGKSTLl~~l~G~   47 (213)
T TIGR01277        25 EIVAIMGPSGAGKSTLLNLIAGF   47 (213)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcC
Confidence            57899999999999999999874

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PRK14528 adenylate kinase; Provisional

Probab=97.70  E-value=3.7e-05  Score=44.50  Aligned_cols=21  Identities=5%  Similarity=-0.124  Sum_probs=19.0

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .|.|.|++|+||||+|+.+..
T Consensus         3 ~i~i~G~pGsGKtt~a~~la~   23 (186)
T PRK14528          3 NIIFMGPPGAGKGTQAKILCE   23 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478899999999999999876

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=97.70  E-value=4.2e-05  Score=46.23  Aligned_cols=23  Identities=22%  Similarity=0.096  Sum_probs=20.8

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .+++|.|++|+|||||++.+...
T Consensus        32 e~~~l~G~nGsGKSTLl~~i~G~   54 (257)
T PRK10619         32 DVISIIGSSGSGKSTFLRCINFL   54 (257)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            57899999999999999998874

>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional

Probab=97.70  E-value=8.4e-05  Score=48.11  Aligned_cols=22  Identities=9%  Similarity=0.068  Sum_probs=20.0

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +-|.+.|++|+|||+||+.+..
T Consensus        51 ~~ILliGp~G~GKT~LAr~LAk   72 (443)
T PRK05201         51 KNILMIGPTGVGKTEIARRLAK   72 (443)
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            4678999999999999999988

>PRK10865 protein disaggregation chaperone; Provisional

Probab=97.69  E-value=0.00015  Score=50.76  Aligned_cols=21  Identities=14%  Similarity=0.147  Sum_probs=18.8

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      -+.++|++|+|||++|+.+..
T Consensus       201 n~lL~G~pGvGKT~l~~~la~  221 (857)
T PRK10865        201 NPVLIGEPGVGKTAIVEGLAQ  221 (857)
T ss_pred             ceEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999888

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=97.69  E-value=4.6e-05  Score=43.67  Aligned_cols=23  Identities=13%  Similarity=0.037  Sum_probs=20.8

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .+++|.|++|+|||||++.+...
T Consensus        29 e~~~i~G~nGsGKStLl~~l~G~   51 (178)
T cd03247          29 EKIALLGRSGSGKSTLLQLLTGD   51 (178)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcc
Confidence            47899999999999999998874

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=97.69  E-value=4.3e-05  Score=45.72  Aligned_cols=23  Identities=13%  Similarity=-0.078  Sum_probs=20.8

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .+++|.|++|+|||||.+.+...
T Consensus        30 e~~~l~G~nGsGKSTLl~~l~G~   52 (241)
T PRK10895         30 EIVGLLGPNGAGKTTTFYMVVGI   52 (241)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            57899999999999999998874

>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type

Probab=97.69  E-value=4e-05  Score=48.02  Aligned_cols=23  Identities=17%  Similarity=0.125  Sum_probs=20.9

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ...|+|.|.+|+|||||++.+..
T Consensus       162 ~~~~~~~G~~~~gkstl~~~l~~  184 (325)
T TIGR01526       162 VKTVAILGGESTGKSTLVNKLAA  184 (325)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46789999999999999999887

E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=97.69  E-value=4.2e-05  Score=47.94  Aligned_cols=23  Identities=13%  Similarity=0.010  Sum_probs=20.7

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .+++|+|.+|+|||||++.+..-
T Consensus        34 e~~~lvG~sGsGKSTL~~~l~Gl   56 (326)
T PRK11022         34 EVVGIVGESGSGKSVSSLAIMGL   56 (326)
T ss_pred             CEEEEECCCCChHHHHHHHHHcC
Confidence            47899999999999999998873

>smart00175 RAB Rab subfamily of small GTPases

Probab=97.69  E-value=4.1e-05  Score=42.71  Aligned_cols=21  Identities=10%  Similarity=0.162  Sum_probs=19.1

Q ss_pred             eeEEcCCCCcHHHHHHHHhcC
Q 037564            5 KPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      |.++|.+|+|||||...+.+.
T Consensus         3 v~v~G~~~~GKTtli~~l~~~   23 (164)
T smart00175        3 IILIGDSGVGKSSLLSRFTDG   23 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            789999999999999999864

Rab GTPases are implicated in vesicle trafficking.

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=97.69  E-value=4.3e-05  Score=46.21  Aligned_cols=22  Identities=9%  Similarity=0.125  Sum_probs=20.3

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|.|++|+|||||.+.+..
T Consensus        31 e~~~i~G~nGsGKSTLl~~laG   52 (258)
T PRK14241         31 SVTAFIGPSGCGKSTVLRTLNR   52 (258)
T ss_pred             cEEEEECCCCCCHHHHHHHHhc
Confidence            4789999999999999999886

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=97.69  E-value=4.4e-05  Score=45.63  Aligned_cols=23  Identities=9%  Similarity=-0.127  Sum_probs=20.7

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .+++|.|.+|+|||||++.+...
T Consensus        48 e~~~i~G~NGsGKSTLl~~i~Gl   70 (236)
T cd03267          48 EIVGFIGPNGAGKTTTLKILSGL   70 (236)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            47899999999999999998863

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=97.69  E-value=8.3e-05  Score=46.75  Aligned_cols=23  Identities=13%  Similarity=-0.034  Sum_probs=20.6

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +.+|+|.|.+|+|||||+..+..
T Consensus        56 ~~~igi~G~~GaGKSTl~~~l~~   78 (332)
T PRK09435         56 ALRIGITGVPGVGKSTFIEALGM   78 (332)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999998776

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=97.69  E-value=4.3e-05  Score=41.86  Aligned_cols=23  Identities=13%  Similarity=0.151  Sum_probs=20.5

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcCc
Q 037564            4 CKPILDSSSFDKTAFTADTYNNN   26 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~~   26 (93)
                      -|++.|.+|+|||||...+....
T Consensus         3 ki~~~G~~~~GKstl~~~l~~~~   25 (161)
T TIGR00231         3 KIVIVGDPNVGKSTLLNRLLGNK   25 (161)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998864

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=97.68  E-value=4.6e-05  Score=44.94  Aligned_cols=23  Identities=9%  Similarity=-0.086  Sum_probs=20.7

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .+++|.|++|.|||||++.+..-
T Consensus        31 ~~~~i~G~nGsGKSTLl~~i~G~   53 (220)
T cd03245          31 EKVAIIGRVGSGKSTLLKLLAGL   53 (220)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            57899999999999999998863

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]

Probab=97.68  E-value=2.3e-05  Score=53.38  Aligned_cols=29  Identities=10%  Similarity=0.080  Sum_probs=24.4

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhcCcccccCC
Q 037564            2 SGCKPILDSSSFDKTAFTADTYNNNHVKFYF   32 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f   32 (93)
                      ..+++.+|++|+|||++|+.++.  .+...|
T Consensus       438 GkIlCf~GPPGVGKTSI~kSIA~--ALnRkF  466 (906)
T KOG2004|consen  438 GKILCFVGPPGVGKTSIAKSIAR--ALNRKF  466 (906)
T ss_pred             CcEEEEeCCCCCCcccHHHHHHH--HhCCce
Confidence            36899999999999999999988  555554

>cd03114 ArgK-like The function of this protein family is unkown

Probab=97.68  E-value=9.9e-05  Score=41.31  Aligned_cols=21  Identities=10%  Similarity=0.023  Sum_probs=18.9

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ++++.|.+|+||||++..+..
T Consensus         1 ~i~~~G~~GsGKTt~~~~l~~   21 (148)
T cd03114           1 VIGITGVPGAGKSTLIDALIT   21 (148)
T ss_pred             CEEEECCCCCcHHHHHHHHHH
Confidence            478999999999999998877

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=97.68  E-value=4.5e-05  Score=45.30  Aligned_cols=23  Identities=13%  Similarity=0.106  Sum_probs=20.7

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .+++|.|.+|+|||||++.+..-
T Consensus        27 e~~~l~G~nGsGKSTLl~~l~G~   49 (230)
T TIGR03410        27 EVTCVLGRNGVGKTTLLKTLMGL   49 (230)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            47899999999999999998863

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit

Probab=97.68  E-value=0.00035  Score=46.23  Aligned_cols=87  Identities=16%  Similarity=0.188  Sum_probs=48.7

Q ss_pred             ceeeEEcCCCCcHHHHH-HHHhcCcccccCCCe-eEEEEeCCCC-CHHHHHHHHHHhhCCCCCCcc-cc-CC-CHH----
Q 037564            3 GCKPILDSSSFDKTAFT-ADTYNNNHVKFYFDC-HAWVRVSISY-DFRMVLDDIIKSVMPPSRVSV-II-GE-DYQ----   72 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa-~~~~~~~~~~~~f~~-~~wv~~~~~~-~~~~ll~~il~~l~~~~~~~~-~~-~~-~~~----   72 (93)
                      .-++|.|.+|+|||+|| ..+.+.  .  .-+. ++++-+.+.. ...++.+.+...-......-. .. +. ...    
T Consensus       162 Qr~~I~g~~g~GKt~Lal~~i~~~--~--~~dv~~V~~~IGer~rev~e~~~~~~~~~~l~~tvvV~atsd~p~~~r~~a  237 (501)
T TIGR00962       162 QRELIIGDRQTGKTAVAIDTIINQ--K--DSDVYCVYVAIGQKASTVAQVVRKLEEHGAMDYTIVVAATASDSASLQYLA  237 (501)
T ss_pred             CEEEeecCCCCCccHHHHHHHHhh--c--CCCeEEEEEEccCChHHHHHHHHHHHhcCccceeEEEEecCCCCHHHHHHH
Confidence            45789999999999996 556552  1  2344 4777776644 456666666653221110000 00 01 111    


Q ss_pred             -HHHHHHHHhc--CCCeEEEEeeC
Q 037564           73 -LKKSILRDYL--TNKKYFIVLDD   93 (93)
Q Consensus        73 -~l~~~l~~~L--~~kr~LlVlDD   93 (93)
                       -..-.+-+++  +++++|+++||
T Consensus       238 ~~~a~aiAEyfrd~G~~VLlv~Dd  261 (501)
T TIGR00962       238 PYTGCTMAEYFRDNGKHALIIYDD  261 (501)
T ss_pred             HHHHHHHHHHHHHcCCCEEEEecc
Confidence             1122344454  57899999997

The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=97.68  E-value=4.6e-05  Score=45.48  Aligned_cols=23  Identities=13%  Similarity=0.024  Sum_probs=20.9

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .+++|.|.+|+|||||++.+...
T Consensus        30 e~~~l~G~nGsGKSTLl~~i~G~   52 (238)
T cd03249          30 KTVALVGSSGCGKSTVVSLLERF   52 (238)
T ss_pred             CEEEEEeCCCCCHHHHHHHHhcc
Confidence            57899999999999999998874

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>PRK10787 DNA-binding ATP-dependent protease La; Provisional

Probab=97.68  E-value=0.00024  Score=49.29  Aligned_cols=22  Identities=9%  Similarity=0.066  Sum_probs=20.3

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .++.++|++|+||||+++.++.
T Consensus       350 ~~i~l~GppG~GKTtl~~~ia~  371 (784)
T PRK10787        350 PILCLVGPPGVGKTSLGQSIAK  371 (784)
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            4788999999999999999987

>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]

Probab=97.68  E-value=0.00018  Score=42.47  Aligned_cols=51  Identities=8%  Similarity=-0.158  Sum_probs=32.4

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHHH
Q 037564            2 SGCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDII   54 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~il   54 (93)
                      ...|+|-|.-|+||||.++.+..  .++...-.+.|..-+.....-+.+++++
T Consensus         3 g~fI~iEGiDGaGKTT~~~~L~~--~l~~~g~~v~~trEP~~~~ige~iR~~l   53 (208)
T COG0125           3 GMFIVIEGIDGAGKTTQAELLKE--RLEERGIKVVLTREPGGTPIGEKIRELL   53 (208)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEeCCCCChHHHHHHHHH
Confidence            45789999999999999999988  5555443344443333323333444433

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=97.68  E-value=4.7e-05  Score=46.02  Aligned_cols=23  Identities=9%  Similarity=0.052  Sum_probs=20.8

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .+++|.|++|+|||||++.++.-
T Consensus        31 e~~~I~G~NGsGKSTLl~~i~Gl   53 (251)
T PRK09544         31 KILTLLGPNGAGKSTLVRVVLGL   53 (251)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            47899999999999999999873

>cd04113 Rab4 Rab4 subfamily

Probab=97.68  E-value=4.3e-05  Score=42.66  Aligned_cols=21  Identities=24%  Similarity=0.159  Sum_probs=19.0

Q ss_pred             eeEEcCCCCcHHHHHHHHhcC
Q 037564            5 KPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      |.+.|.+|+|||||+.++...
T Consensus         3 i~v~G~~~vGKTsli~~l~~~   23 (161)
T cd04113           3 FIIIGSSGTGKSCLLHRFVEN   23 (161)
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            689999999999999998764

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=97.68  E-value=4.7e-05  Score=47.12  Aligned_cols=23  Identities=13%  Similarity=-0.097  Sum_probs=20.7

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .+++|.|++|+|||||.+.+..-
T Consensus        20 e~~~l~G~NGaGKSTLl~~l~Gl   42 (302)
T TIGR01188        20 EVFGFLGPNGAGKTTTIRMLTTL   42 (302)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            47899999999999999998873

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.68  E-value=4.9e-05  Score=44.31  Aligned_cols=23  Identities=17%  Similarity=0.020  Sum_probs=20.6

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .+++|.|++|.|||||.+.+...
T Consensus        28 e~~~l~G~nGsGKSTLl~~i~G~   50 (200)
T PRK13540         28 GLLHLKGSNGAGKTTLLKLIAGL   50 (200)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            47899999999999999988774

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.67  E-value=4.5e-05  Score=46.66  Aligned_cols=23  Identities=4%  Similarity=-0.006  Sum_probs=20.5

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .+++|.|++|+|||||++.++.-
T Consensus        34 e~~~l~G~nGsGKSTLl~~i~Gl   56 (280)
T PRK13649         34 SYTAFIGHTGSGKSTIMQLLNGL   56 (280)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            47899999999999999998763

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=97.67  E-value=4.7e-05  Score=46.11  Aligned_cols=22  Identities=9%  Similarity=0.119  Sum_probs=20.1

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|.|++|+|||||++.+..
T Consensus        40 e~~~i~G~nGsGKSTLl~~l~G   61 (260)
T PRK10744         40 QVTAFIGPSGCGKSTLLRTFNR   61 (260)
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            4789999999999999999875

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=97.67  E-value=5.1e-05  Score=43.33  Aligned_cols=23  Identities=13%  Similarity=0.018  Sum_probs=20.7

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .+++|.|++|.|||||.+.+...
T Consensus        27 e~~~i~G~nGsGKStLl~~l~G~   49 (173)
T cd03230          27 EIYGLLGPNGAGKTTLIKIILGL   49 (173)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            47899999999999999998874

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.67  E-value=4.7e-05  Score=45.87  Aligned_cols=23  Identities=13%  Similarity=0.157  Sum_probs=20.6

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .+++|.|++|+|||||.+.+..-
T Consensus        31 e~~~l~G~nGsGKSTLl~~l~G~   53 (253)
T PRK14267         31 GVFALMGPSGCGKSTLLRTFNRL   53 (253)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcc
Confidence            47899999999999999998763

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.67  E-value=4e-05  Score=48.63  Aligned_cols=22  Identities=9%  Similarity=-0.049  Sum_probs=19.5

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ..+.++|++|+||||+|+.+++
T Consensus        39 h~~L~~Gp~G~GKTtla~~la~   60 (363)
T PRK14961         39 HAWLLSGTRGVGKTTIARLLAK   60 (363)
T ss_pred             eEEEEecCCCCCHHHHHHHHHH
Confidence            3567999999999999999887

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=97.67  E-value=4e-05  Score=42.61  Aligned_cols=20  Identities=15%  Similarity=0.142  Sum_probs=18.5

Q ss_pred             eeEEcCCCCcHHHHHHHHhc
Q 037564            5 KPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~   24 (93)
                      |++.|.+|+|||||.+.+.+
T Consensus         2 i~l~G~~g~GKTtL~~~l~~   21 (170)
T cd01876           2 IAFAGRSNVGKSSLINALTN   21 (170)
T ss_pred             EEEEcCCCCCHHHHHHHHhc
Confidence            68999999999999999993

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	93
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	9e-11
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	9e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591

 Score = 55.2 bits (133), Expect = 9e-11
 Identities = 14/85 (16%), Positives = 32/85 (37%), Gaps = 6/85 (7%)

Query: 15  KTAFTADTYNNNHVK--FYFDCHAWVRVSISYDFRMV--LDDIIKSVMPPSRVSVIIGED 70
           K+   A+   ++ +    +     WV V       ++  L ++   +      S  +  +
Sbjct: 160 KSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLN 219

Query: 71  YQLKKSILRDYLTNK--KYFIVLDD 93
            +  K  LR  +  K  +  ++LDD
Sbjct: 220 IEEAKDRLRILMLRKHPRSLLILDD 244

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549

 Score = 49.6 bits (118), Expect = 9e-09
 Identities = 14/87 (16%), Positives = 29/87 (33%), Gaps = 8/87 (9%)

Query: 15  KTAFTADTYNNN--HVKFYFDCHAWVRVSISYDFRM--VLDDIIKSV----MPPSRVSVI 66
           K+   +   + +   +   +D   W++ S +       +  DI+  +       +  SV 
Sbjct: 165 KSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVE 224

Query: 67  IGEDYQLKKSILRDYLTNKKYFIVLDD 93
                 LK+ I    +       V DD
Sbjct: 225 HVTSVVLKRMICNALIDRPNTLFVFDD 251

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 2e-05
 Identities = 17/90 (18%), Positives = 33/90 (36%), Gaps = 11/90 (12%)

Query: 15  KTAFTADTYNNNHVKFYFDCHA-WVRVSISYDFRMVLD---DIIKSVMPPSRVSVIIGED 70
           KT    D   +  V+   D    W+ +        VL+    ++  + P          +
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222

Query: 71  YQLK----KSILRDYLTNKKY---FIVLDD 93
            +L+    ++ LR  L +K Y    +VL +
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLN 252

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	93
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	99.9
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	99.79
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.75
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	99.69
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	99.44
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	99.39
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	99.37
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	99.33
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	99.31
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	99.14
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	99.13
2fna_A	357	Conserved hypothetical protein; structural genomic	99.04
2cvh_A	220	DNA repair and recombination protein RADB; filamen	98.84
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	98.8
2chg_A	226	Replication factor C small subunit; DNA-binding pr	98.76
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	98.69
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	98.65
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	98.64
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	98.63
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	98.63
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	98.61
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	98.6
1xp8_A	366	RECA protein, recombinase A; recombination, radior	98.59
1u94_A	356	RECA protein, recombinase A; homologous recombinat	98.57
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	98.55
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	98.53
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	98.51
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	98.48
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	98.48
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	98.46
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	98.45
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	98.44
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	98.43
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	98.42
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	98.42
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	98.41
3io5_A	333	Recombination and repair protein; storage dimer, i	98.41
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	98.4
2z43_A	324	DNA repair and recombination protein RADA; archaea	98.4
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	98.38
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	98.35
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	98.35
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	98.35
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	98.35
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	98.35
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	98.34
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	98.34
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	98.34
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	98.33
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	98.33
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	98.33
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	98.32
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	98.32
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	98.32
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	98.3
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	98.29
3bos_A	242	Putative DNA replication factor; P-loop containing	98.28
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	98.28
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	98.27
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	98.27
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	98.26
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	98.26
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	98.26
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	98.25
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	98.25
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	98.24
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	98.24
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	98.23
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	98.23
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	98.23
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	98.23
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	98.23
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	98.22
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	98.22
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	98.21
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	98.21
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	98.21
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	98.2
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	98.2
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	98.19
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	98.19
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	98.19
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	98.19
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	98.19
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	98.19
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	98.18
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	98.18
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	98.18
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	98.17
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	98.16
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	98.16
1via_A	175	Shikimate kinase; structural genomics, transferase	98.16
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.16
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	98.16
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	98.16
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	98.16
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	98.16
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	98.15
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	98.15
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	98.15
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	98.15
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	98.15
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	98.15
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	98.15
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	98.14
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	98.14
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	98.14
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	98.14
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	98.14
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	98.13
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	98.13
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	98.12
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	98.12
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	98.12
3ice_A	422	Transcription termination factor RHO; transcriptio	98.12
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	98.12
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	98.11
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	98.11
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	98.11
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	98.11
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	98.11
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	98.1
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	98.1
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.1
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	98.1
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	98.09
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	98.09
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	98.09
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	98.09
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	98.09
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	98.09
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	98.09
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	98.08
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	98.08
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.08
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	98.08
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	98.08
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	98.07
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	98.07
2vli_A	183	Antibiotic resistance protein; transferase, tunica	98.07
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	98.07
4a74_A	231	DNA repair and recombination protein RADA; hydrola	98.07
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	98.06
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	98.06
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	98.06
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	98.06
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	98.06
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	98.06
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	98.05
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	98.05
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	98.05
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	98.05
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	98.04
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	98.04
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	98.03
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	98.03
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	98.01
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	98.01
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	98.01
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	98.01
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	98.01
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	98.01
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	98.01
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	98.01
1fx0_B	498	ATP synthase beta chain; latent ATPase, thermal st	98.01
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	98.01
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	98.0
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	98.0
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	98.0
2r6a_A	454	DNAB helicase, replicative helicase; replication,	98.0
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	98.0
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	98.0
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	98.0
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	98.0
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	97.99
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	97.99
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	97.99
3fwy_A	314	Light-independent protochlorophyllide reductase I	97.99
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.99
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	97.98
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	97.98
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	97.97
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	97.97
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	97.97
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	97.97
1b0u_A	262	Histidine permease; ABC transporter, transport pro	97.97
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	97.96
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	97.96
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	97.96
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.96
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	97.95
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	97.95
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	97.95
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.94
1g6h_A	257	High-affinity branched-chain amino acid transport	97.94
2xxa_A	433	Signal recognition particle protein; protein trans	97.94
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	97.94
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	97.94
1sgw_A	214	Putative ABC transporter; structural genomics, P p	97.94
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	97.94
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	97.94
1ji0_A	240	ABC transporter; ATP binding protein, structural g	97.94
3co5_A	143	Putative two-component system transcriptional RES	97.93
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	97.93
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	97.93
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	97.93
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	97.93
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	97.93
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	97.93
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	97.93
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.92
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	97.92
2qgz_A	308	Helicase loader, putative primosome component; str	97.91
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	97.91
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	97.91
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	97.91
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	97.91
2ghi_A	260	Transport protein; multidrug resistance protein, M	97.91
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	97.9
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	97.9
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	97.9
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	97.9
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	97.9
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	97.89
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	97.89
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	97.88
2ck3_D	482	ATP synthase subunit beta\, mitochondrial; hydrola	97.88
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	97.88
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	97.88
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	97.88
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	97.88
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	97.88
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	97.88
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	97.88
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	97.88
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	97.88
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.87
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	97.87
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	97.86
2og2_A	359	Putative signal recognition particle receptor; nuc	97.86
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	97.86
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	97.86
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	97.85
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	97.85
3pvs_A	447	Replication-associated recombination protein A; ma	97.84
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	97.84
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	97.84
3vr4_D	465	V-type sodium ATPase subunit D; V-ATPase, rotary m	97.83
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	97.83
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	97.83
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	97.83
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	97.83
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	97.81
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	97.81
2qe7_A	502	ATP synthase subunit alpha; blockage of ATP hydrol	97.81
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	97.81
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	97.81
1fx0_A	507	ATP synthase alpha chain; latent ATPase, thermal s	97.8
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	97.79
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	97.79
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	97.79
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	97.78
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	97.78
3kta_A	182	Chromosome segregation protein SMC; structural mai	97.78
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	97.78
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	97.77
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	97.77
2hf9_A	226	Probable hydrogenase nickel incorporation protein	97.77
2r9v_A	515	ATP synthase subunit alpha; TM1612, structural gen	97.77
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	97.77
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	97.76
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	97.76
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	97.75
2wji_A	165	Ferrous iron transport protein B homolog; membrane	97.75
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	97.75
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	97.75
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	97.75
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	97.75
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	97.74
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	97.74
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	97.74
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	97.74
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	97.73
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	97.73
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	97.72
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	97.72
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	97.72
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	97.72
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	97.71
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	97.71
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	97.7
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	97.7
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	97.69
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	97.69
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	97.69
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	97.69
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	97.68
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	97.68
1tue_A	212	Replication protein E1; helicase, replication, E1E	97.68
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	97.67
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	97.67
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	97.67
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	97.65
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	97.65
3gqb_B	464	V-type ATP synthase beta chain; A3B3, V-ATPase, AT	97.65
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	97.64
3l0o_A	427	Transcription termination factor RHO; helicase, RH	97.64
2ck3_A	510	ATP synthase subunit alpha\, mitochondrial; hydrol	97.64
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	97.64
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	97.64
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	97.63
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	97.63
3oaa_A	513	ATP synthase subunit alpha; rossmann fold, hydrola	97.63
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	97.62
2ewv_A	372	Twitching motility protein PILT; pilus retraction	97.62
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	97.62
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	97.62
2r44_A	331	Uncharacterized protein; putative ATPase, structur	97.62
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	97.62
3end_A	307	Light-independent protochlorophyllide reductase ir	97.62
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	97.61
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	97.61
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	97.61
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	97.61
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	97.61
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	97.6
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	97.6
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	97.6
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	97.6
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	97.6
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	97.6
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	97.59
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	97.59
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	97.59
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	97.59
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	97.58
2ged_A	193	SR-beta, signal recognition particle receptor beta	97.57
2c61_A	469	A-type ATP synthase non-catalytic subunit B; hydro	97.57
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	97.56
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	97.56
3mfy_A	588	V-type ATP synthase alpha chain; A-type ATP syntha	97.56
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	97.56
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	97.56
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	97.55
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	97.55
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	97.55
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	97.55
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	97.55
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	97.54
1cp2_A	269	CP2, nitrogenase iron protein; oxidoreductase; 1.9	97.54
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	97.54
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.54
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	97.54
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	97.54
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	97.54
2chq_A	319	Replication factor C small subunit; DNA-binding pr	97.54
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	97.54
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	97.54
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	97.54
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	97.53
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	97.53
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	97.53
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	97.52
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	97.52
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	97.52
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	97.52
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	97.52
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.52
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	97.52
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	97.52
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	97.52
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	97.51
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	97.51
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	97.51
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	97.51
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	97.51
1nrj_B	218	SR-beta, signal recognition particle receptor beta	97.51
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	97.51
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	97.51
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	97.5
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	97.5
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	97.5
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	97.5
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	97.5
1p9r_A	418	General secretion pathway protein E; bacterial typ	97.49
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	97.49
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	97.49
1g5t_A	196	COB(I)alamin adenosyltransferase; P-loop protein,	97.49
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	97.49
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	97.48
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	97.48
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	97.48
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	97.48
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	97.48
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	97.47
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	97.47
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	97.46
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	97.46
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	97.46
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	97.46
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	97.46
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	97.46
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	97.45
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	97.45
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	97.45
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	97.45
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	97.45
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	97.45
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	97.44
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	97.44
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	97.44
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	97.44
3kjh_A	254	CO dehydrogenase/acetyl-COA synthase complex, acce	97.44
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	97.44
2afh_E	289	Nitrogenase iron protein 1; nitrogen fixation, iro	97.44
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	97.44
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	97.44
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	97.44
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	97.43
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	97.43
3llu_A	196	RAS-related GTP-binding protein C; structural geno	97.43
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	97.43
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	97.43
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	97.43
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	97.43
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	97.42
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	97.42
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	97.42
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	97.42
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	97.42
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	97.42
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	97.42
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	97.42
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	97.42
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	97.42
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	97.42
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	97.41
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	97.41
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	97.41
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	97.41
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	97.41
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	97.41
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	97.41
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	97.41
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	97.4
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	97.4
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	97.4
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	97.4
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	97.4
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	97.4
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	97.4
2fh5_B	214	SR-beta, signal recognition particle receptor beta	97.4
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	97.4
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	97.39
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	97.39
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	97.39
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	97.39
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	97.39
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	97.38
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	97.38
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	97.38
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	97.38
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	97.38
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	97.38
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	97.37
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	97.37
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	97.36
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	97.36
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	97.36
3zq6_A	324	Putative arsenical pump-driving ATPase; tail-ancho	97.36
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	97.36
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	97.35
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	97.35
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.35
3iqw_A	334	Tail-anchored protein targeting factor GET3; ATPas	97.34
3q9l_A	260	Septum site-determining protein MIND; ATPase, bact	97.34
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.34
3io3_A	348	DEHA2D07832P; chaperone, membrane traffic, ATPase;	97.33
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	97.33
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	97.33
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	97.32
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	97.32
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	97.32
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	97.32
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	97.32
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	97.31
2gk6_A	624	Regulator of nonsense transcripts 1; UPF1, helicas	97.31
3igf_A	374	ALL4481 protein; two-domained protein consisting o	97.31
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	97.3
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	97.3
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	97.3
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	97.3
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	97.3
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	97.29
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	97.29
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	97.29
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	97.28
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	97.28
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	97.27
3vr4_A	600	V-type sodium ATPase catalytic subunit A; V-ATPase	97.27

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=99.90  E-value=2e-23  Score=134.82  Aligned_cols=92  Identities=13%  Similarity=0.205  Sum_probs=77.0

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc--CcccccCCCeeEEEEeCCCC--CHHHHHHHHHHhhCCCCC-Ccc-ccC-CCHHHH
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN--NNHVKFYFDCHAWVRVSISY--DFRMVLDDIIKSVMPPSR-VSV-IIG-EDYQLK   74 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~--~~~~~~~f~~~~wv~~~~~~--~~~~ll~~il~~l~~~~~-~~~-~~~-~~~~~l   74 (93)
                      .++|+|+||||+||||||+++|+  +.++..+|+.++|+++++..  +...++..|+.++..... ... ..+ .+.+.+
T Consensus       152 ~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l  231 (549)
T 2a5y_B          152 SFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVL  231 (549)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTCCHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHHHhcCcccccccccccccHHHH
Confidence            37899999999999999999997  66889999999999999875  789999999999975421 111 122 466788


Q ss_pred             HHHHHHhcCCC-eEEEEeeC
Q 037564           75 KSILRDYLTNK-KYFIVLDD   93 (93)
Q Consensus        75 ~~~l~~~L~~k-r~LlVlDD   93 (93)
                      ...+++.|.++ ||||||||
T Consensus       232 ~~~l~~~L~~~kr~LlVLDd  251 (549)
T 2a5y_B          232 KRMICNALIDRPNTLFVFDD  251 (549)
T ss_dssp             HHHHHHHHTTSTTEEEEEEE
T ss_pred             HHHHHHHHcCCCcEEEEEEC
Confidence            99999999996 99999997

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=99.79  E-value=1.2e-19  Score=123.49  Aligned_cols=92  Identities=16%  Similarity=0.058  Sum_probs=69.0

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhcCcccccCCCe-eEEEEeCCCCCHHHHHHHHHHhhCC---CCCCccc--c-C-CCHHH
Q 037564            2 SGCKPILDSSSFDKTAFTADTYNNNHVKFYFDC-HAWVRVSISYDFRMVLDDIIKSVMP---PSRVSVI--I-G-EDYQL   73 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~-~~wv~~~~~~~~~~ll~~il~~l~~---~~~~~~~--~-~-~~~~~   73 (93)
                      .++|+|+||||+||||||++++++.++..+|+. ++|+++++.++...++..+++.+..   .......  . . .+.+.
T Consensus       150 ~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i~~~~~~~~d~~~~ip~~lee  229 (1221)
T 1vt4_I          150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS  229 (1221)
T ss_dssp             SCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHHCSSSTTTSCCCSSHHHHHHH
T ss_pred             CeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhcCcccccccccccCCCCCHHH
Confidence            379999999999999999999987678889987 8999999998888888887774321   1000000  0 0 24455


Q ss_pred             HHHHHHHhc---CCCeEEEEeeC
Q 037564           74 KKSILRDYL---TNKKYFIVLDD   93 (93)
Q Consensus        74 l~~~l~~~L---~~kr~LlVlDD   93 (93)
                      +...+++.|   .++|+||||||
T Consensus       230 L~e~Lr~lL~~l~~KRvLLVLDD  252 (1221)
T 1vt4_I          230 IQAELRRLLKSKPYENCLLVLLN  252 (1221)
T ss_dssp             HHHHHHHHHHHSTTSSCEEEEES
T ss_pred             HHHHHHHHHHhhcCCCEEEEEeC
Confidence            667777765   78999999998

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.75  E-value=4.5e-18  Score=116.47  Aligned_cols=92  Identities=18%  Similarity=0.286  Sum_probs=68.1

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhcCccc-ccCC-CeeEEEEeCCCCC--HHHHHHHHHHhhCCCCCCccccCCCHHHHHHH
Q 037564            2 SGCKPILDSSSFDKTAFTADTYNNNHV-KFYF-DCHAWVRVSISYD--FRMVLDDIIKSVMPPSRVSVIIGEDYQLKKSI   77 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~-~~~f-~~~~wv~~~~~~~--~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~~   77 (93)
                      .++|+|+||||+||||||++++++.+. ..+| +.++|+++++...  ....+..++..+............+.+.+...
T Consensus       147 ~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  226 (1249)
T 3sfz_A          147 PGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDR  226 (1249)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHH
T ss_pred             CCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHH
Confidence            368999999999999999999996433 4445 5566999988544  34446777777764332111111678889999


Q ss_pred             HHHhcCCC--eEEEEeeC
Q 037564           78 LRDYLTNK--KYFIVLDD   93 (93)
Q Consensus        78 l~~~L~~k--r~LlVlDD   93 (93)
                      ++..|.++  |+||||||
T Consensus       227 l~~~l~~~~~~~LlvlDd  244 (1249)
T 3sfz_A          227 LRVLMLRKHPRSLLILDD  244 (1249)
T ss_dssp             HHHHTSSSSCSCEEEEES
T ss_pred             HHHHHhccCCCEEEEEec
Confidence            99999877  99999998

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=99.69  E-value=6.3e-17  Score=104.97  Aligned_cols=90  Identities=19%  Similarity=0.225  Sum_probs=63.7

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhcCccc-ccCCC-eeEEEEeCCCCCHHHHHHHH---HHhhCCCCCCccccC-CCHHHHH
Q 037564            2 SGCKPILDSSSFDKTAFTADTYNNNHV-KFYFD-CHAWVRVSISYDFRMVLDDI---IKSVMPPSRVSVIIG-EDYQLKK   75 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~-~~~f~-~~~wv~~~~~~~~~~ll~~i---l~~l~~~~~~~~~~~-~~~~~l~   75 (93)
                      .++|+|+||+|+||||||.+++++.+. ..+|. .++|++++.. +...++..+   +..+....... ... .+.+.+.
T Consensus       147 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~~l~~~l~~~~~~~-~~~~~~~~~~~  224 (591)
T 1z6t_A          147 PGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQNLCTRLDQDESFS-QRLPLNIEEAK  224 (591)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHHHHHHHHHCSSCCSC-SSCCCSHHHHH
T ss_pred             CceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHHHHHHHHhccccccc-cCCCCCHHHHH
Confidence            468999999999999999999996555 67884 7899998765 333344333   44454211100 111 5777888


Q ss_pred             HHHHHhcCC--CeEEEEeeC
Q 037564           76 SILRDYLTN--KKYFIVLDD   93 (93)
Q Consensus        76 ~~l~~~L~~--kr~LlVlDD   93 (93)
                      ..+++.+.+  +++||||||
T Consensus       225 ~~l~~~l~~~~~~~LLVLDd  244 (591)
T 1z6t_A          225 DRLRILMLRKHPRSLLILDD  244 (591)
T ss_dssp             HHHHHHHHHTCTTCEEEEEE
T ss_pred             HHHHHHHccCCCCeEEEEeC
Confidence            888888865  789999997

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=99.44  E-value=4.9e-13  Score=83.31  Aligned_cols=86  Identities=19%  Similarity=0.128  Sum_probs=62.2

Q ss_pred             ceeeE--EcCCCCcHHHHHHHHhcCcccccC-----CC-eeEEEEeCCCCCHHHHHHHHHHhhCCCCCCccccCCCHHHH
Q 037564            3 GCKPI--LDSSSFDKTAFTADTYNNNHVKFY-----FD-CHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIGEDYQLK   74 (93)
Q Consensus         3 ~~i~i--~G~~G~GKTtLa~~~~~~~~~~~~-----f~-~~~wv~~~~~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~l   74 (93)
                      +.+.|  +|++|+|||||++.+++  .....     +. ..+|+++....+...++..++.+++.......   .+...+
T Consensus        51 ~~~li~i~G~~G~GKT~L~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~---~~~~~~  125 (412)
T 1w5s_A           51 VNMIYGSIGRVGIGKTTLAKFTVK--RVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRG---APALDI  125 (412)
T ss_dssp             EEEEEECTTCCSSSHHHHHHHHHH--HHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTT---CCHHHH
T ss_pred             CEEEEeCcCcCCCCHHHHHHHHHH--HHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCC---CCHHHH
Confidence            45666  99999999999999998  44331     22 34677766777888999999999864422111   456667


Q ss_pred             HHHHHHhcC--CCeEEEEeeC
Q 037564           75 KSILRDYLT--NKKYFIVLDD   93 (93)
Q Consensus        75 ~~~l~~~L~--~kr~LlVlDD   93 (93)
                      ...+.+.+.  +++++|||||
T Consensus       126 ~~~l~~~l~~~~~~~llvlDe  146 (412)
T 1w5s_A          126 LKALVDNLYVENHYLLVILDE  146 (412)
T ss_dssp             HHHHHHHHHHHTCEEEEEEES
T ss_pred             HHHHHHHHHhcCCeEEEEEeC
Confidence            777777774  6789999997

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=99.39  E-value=3.9e-12  Score=78.49  Aligned_cols=87  Identities=16%  Similarity=0.029  Sum_probs=63.5

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhcCcccccC------CCeeEEEEeCCCCCHHHHHHHHHHhhCCCCCCccccCCCHHHHH
Q 037564            2 SGCKPILDSSSFDKTAFTADTYNNNHVKFY------FDCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIGEDYQLKK   75 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~------f~~~~wv~~~~~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~l~   75 (93)
                      ++.+.|+|++|+||||+|+.+++  .....      -...+|+++....+...++..+++.+........   .+...+.
T Consensus        44 ~~~vll~G~~G~GKT~l~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~---~~~~~~~  118 (387)
T 2v1u_A           44 PSNALLYGLTGTGKTAVARLVLR--RLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTG---LSVGEVY  118 (387)
T ss_dssp             CCCEEECBCTTSSHHHHHHHHHH--HHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSC---CCHHHHH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHH--HHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCC---CCHHHHH
Confidence            35688999999999999999998  44321      1235677777888889999999999865332211   4566777


Q ss_pred             HHHHHhc--CCCeEEEEeeC
Q 037564           76 SILRDYL--TNKKYFIVLDD   93 (93)
Q Consensus        76 ~~l~~~L--~~kr~LlVlDD   93 (93)
                      ..+.+.+  .+++++|+|||
T Consensus       119 ~~l~~~l~~~~~~~vlilDE  138 (387)
T 2v1u_A          119 ERLVKRLSRLRGIYIIVLDE  138 (387)
T ss_dssp             HHHHHHHTTSCSEEEEEEET
T ss_pred             HHHHHHHhccCCeEEEEEcc
Confidence            7777777  34688999997

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=99.37  E-value=2.8e-12  Score=79.33  Aligned_cols=88  Identities=16%  Similarity=0.056  Sum_probs=62.3

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhcCcccccC--------CCeeEEEEeCCCC-CHHHHHHHHHHhhCCCCCCccccCCCHH
Q 037564            2 SGCKPILDSSSFDKTAFTADTYNNNHVKFY--------FDCHAWVRVSISY-DFRMVLDDIIKSVMPPSRVSVIIGEDYQ   72 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~--------f~~~~wv~~~~~~-~~~~ll~~il~~l~~~~~~~~~~~~~~~   72 (93)
                      ++.+.|+|++|+|||+||+.+++  .....        ....+|+++.... +...++..++..+.......  ...+..
T Consensus        45 ~~~vll~G~~G~GKT~la~~l~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~--~~~~~~  120 (384)
T 2qby_B           45 KFSNLFLGLTGTGKTFVSKYIFN--EIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPK--HGINLG  120 (384)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHH--HHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCS--SSSCTH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHH--HHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCCC--CCCCHH
Confidence            35789999999999999999998  43221        2345677766666 88888899888873221110  004556


Q ss_pred             HHHHHHHHhcCCCeEEEEeeC
Q 037564           73 LKKSILRDYLTNKKYFIVLDD   93 (93)
Q Consensus        73 ~l~~~l~~~L~~kr~LlVlDD   93 (93)
                      .+...+.+.+..++.+|+|||
T Consensus       121 ~~~~~l~~~l~~~~~vlilDE  141 (384)
T 2qby_B          121 EYIDKIKNGTRNIRAIIYLDE  141 (384)
T ss_dssp             HHHHHHHHHHSSSCEEEEEET
T ss_pred             HHHHHHHHHhccCCCEEEEEC
Confidence            777888888877766999997

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=99.33  E-value=2.5e-11  Score=75.05  Aligned_cols=85  Identities=19%  Similarity=0.171  Sum_probs=61.7

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcCcccccCC-CeeEEEEeCCCCCHHHHHHHHHHhhCCCCCCccccCCCHHHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYNNNHVKFYF-DCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYL   82 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~L   82 (93)
                      .+.|+|++|+|||||++.+++  ...... ...+|++++...+...++..++..++.......   .+...+.+.+.+.+
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~---~~~~~~~~~l~~~l  120 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWE--LYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRG---LSRDEFLALLVEHL  120 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH--HHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSC---CCHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH--HHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCC---CCHHHHHHHHHHHH
Confidence            789999999999999999988  444331 245677777777888999999988864322111   45666667776666


Q ss_pred             C--CCeEEEEeeC
Q 037564           83 T--NKKYFIVLDD   93 (93)
Q Consensus        83 ~--~kr~LlVlDD   93 (93)
                      .  +++.+|+|||
T Consensus       121 ~~~~~~~vlilDE  133 (389)
T 1fnn_A          121 RERDLYMFLVLDD  133 (389)
T ss_dssp             HHTTCCEEEEEET
T ss_pred             hhcCCeEEEEEEC
Confidence            3  5678999996

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=99.31  E-value=4.6e-12  Score=78.07  Aligned_cols=87  Identities=17%  Similarity=0.073  Sum_probs=60.0

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhcCcccccCC---CeeEEEEeCCCCCHHHHHHHHHHhhCCCCCCccccCCCHHHHHHHH
Q 037564            2 SGCKPILDSSSFDKTAFTADTYNNNHVKFYF---DCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIGEDYQLKKSIL   78 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f---~~~~wv~~~~~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~~l   78 (93)
                      ++.+.|+|++|+|||||++.+++  .....+   ...+|+++....+...++..++..++.......   .+.......+
T Consensus        45 ~~~vli~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~---~~~~~~~~~l  119 (386)
T 2qby_A           45 PNNIFIYGLTGTGKTAVVKFVLS--KLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTG---LSIAELYRRL  119 (386)
T ss_dssp             CCCEEEEECTTSSHHHHHHHHHH--HHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSS---CCHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH--HHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCCCC---CCHHHHHHHH
Confidence            35789999999999999999998  444332   245667766666777788888877754322111   4456666666


Q ss_pred             HHhcC--CCeEEEEeeC
Q 037564           79 RDYLT--NKKYFIVLDD   93 (93)
Q Consensus        79 ~~~L~--~kr~LlVlDD   93 (93)
                      .+.+.  +++.+|+|||
T Consensus       120 ~~~l~~~~~~~vlilDE  136 (386)
T 2qby_A          120 VKAVRDYGSQVVIVLDE  136 (386)
T ss_dssp             HHHHHTCCSCEEEEEET
T ss_pred             HHHHhccCCeEEEEEcC
Confidence            66663  4588999996

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=99.14  E-value=6.1e-10  Score=68.16  Aligned_cols=87  Identities=7%  Similarity=0.015  Sum_probs=56.3

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhcCcccccC-----C-C-eeEEEEeCCCCCHHHHHHHHHHhhCCCCCCccccCCCHHHH
Q 037564            2 SGCKPILDSSSFDKTAFTADTYNNNHVKFY-----F-D-CHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIGEDYQLK   74 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~-----f-~-~~~wv~~~~~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~l   74 (93)
                      ++.+.|+|++|+|||++++.+++  ++...     . . ..+++++....+...++..|++++.+......   ...+.+
T Consensus        45 ~~~lli~GpPGTGKT~~v~~v~~--~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~---~~~~~L  119 (318)
T 3te6_A           45 NKLFYITNADDSTKFQLVNDVMD--ELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGD---ISLEAL  119 (318)
T ss_dssp             CCEEEEECCCSHHHHHHHHHHHH--HHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CC---CCHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH--HHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCch---HHHHHH
Confidence            45688999999999999999998  44321     1 1 24566767778889999999999965422111   334444


Q ss_pred             HHHHHHh--cCCCeEEEEeeC
Q 037564           75 KSILRDY--LTNKKYFIVLDD   93 (93)
Q Consensus        75 ~~~l~~~--L~~kr~LlVlDD   93 (93)
                      ...+...  -.+++++++||+
T Consensus       120 ~~~f~~~~~~~~~~~ii~lDE  140 (318)
T 3te6_A          120 NFYITNVPKAKKRKTLILIQN  140 (318)
T ss_dssp             HHHHHHSCGGGSCEEEEEEEC
T ss_pred             HHHHHHhhhccCCceEEEEec
Confidence            4444432  145678999995

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=99.13  E-value=1e-10  Score=71.27  Aligned_cols=84  Identities=10%  Similarity=0.099  Sum_probs=53.5

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCC------CHHHHHHHHHHhhCCC------------C-CC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISY------DFRMVLDDIIKSVMPP------------S-RV   63 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~------~~~~ll~~il~~l~~~------------~-~~   63 (93)
                      +++.|+|++|+|||||++++++  +.    . .+|+++....      +...++..+.+.+...            . ..
T Consensus        32 ~~v~i~G~~G~GKT~Ll~~~~~--~~----~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  104 (350)
T 2qen_A           32 PLTLLLGIRRVGKSSLLRAFLN--ER----P-GILIDCRELYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFL  104 (350)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHH--HS----S-EEEEEHHHHHHTTTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGG
T ss_pred             CeEEEECCCcCCHHHHHHHHHH--Hc----C-cEEEEeecccccccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecce
Confidence            5789999999999999999987  32    2 5666654322      5566666666654320            0 00


Q ss_pred             ccccC-CCHHHHHHHHHHhcCC-CeEEEEeeC
Q 037564           64 SVIIG-EDYQLKKSILRDYLTN-KKYFIVLDD   93 (93)
Q Consensus        64 ~~~~~-~~~~~l~~~l~~~L~~-kr~LlVlDD   93 (93)
                      ..... .+..++.+.+.+.... ++++||+||
T Consensus       105 ~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe  136 (350)
T 2qen_A          105 TLEPRKLSLREVFRELNDLGEELGEFIVAFDE  136 (350)
T ss_dssp             TSCGGGCCHHHHHHHHHHHHHHHSCEEEEEET
T ss_pred             eeccccchHHHHHHHHHHHHhccCCEEEEEeC
Confidence            00011 4566677777666643 389999997

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=99.04  E-value=2.5e-09  Score=65.29  Aligned_cols=48  Identities=10%  Similarity=0.102  Sum_probs=32.5

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCC-----CCHHHHHHHHHH
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSIS-----YDFRMVLDDIIK   55 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-----~~~~~ll~~il~   55 (93)
                      +++.|+|++|+|||+|++.+.+  +...   ..+|+.+...     .+...++..+.+
T Consensus        31 ~~v~i~G~~G~GKT~L~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~   83 (357)
T 2fna_A           31 PITLVLGLRRTGKSSIIKIGIN--ELNL---PYIYLDLRKFEERNYISYKDFLLELQK   83 (357)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHH--HHTC---CEEEEEGGGGTTCSCCCHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHH--hcCC---CEEEEEchhhccccCCCHHHHHHHHHH
Confidence            4789999999999999999988  3332   2467776532     344444444443

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=98.84  E-value=3.9e-08  Score=56.59  Aligned_cols=85  Identities=9%  Similarity=0.015  Sum_probs=48.9

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHHHHhhCCCCCC-----cc-cc-C-CCHHHH
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSVMPPSRV-----SV-II-G-EDYQLK   74 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~il~~l~~~~~~-----~~-~~-~-~~~~~l   74 (93)
                      .++.|.|++|+|||||+..++.  .   .-..++|++.....+...+.+ +.+........     .. .. . ......
T Consensus        21 ~~~~i~G~~GsGKTtl~~~l~~--~---~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (220)
T 2cvh_A           21 VLTQVYGPYASGKTTLALQTGL--L---SGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQRRV   94 (220)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHH--H---HCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH--H---cCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHHHH
Confidence            5789999999999999999987  1   123567777666555554433 33332210000     00 00 0 222345


Q ss_pred             HHHHHHhcCCCeEEEEeeC
Q 037564           75 KSILRDYLTNKKYFIVLDD   93 (93)
Q Consensus        75 ~~~l~~~L~~kr~LlVlDD   93 (93)
                      ...++..+..+.-++|+|.
T Consensus        95 ~~~~~~l~~~~~~lliiD~  113 (220)
T 2cvh_A           95 IGSLKKTVDSNFALVVVDS  113 (220)
T ss_dssp             HHHHHHHCCTTEEEEEEEC
T ss_pred             HHHHHHHhhcCCCEEEEcC
Confidence            5566666644566888984

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=98.80  E-value=1.5e-08  Score=57.91  Aligned_cols=36  Identities=19%  Similarity=-0.066  Sum_probs=26.9

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEe
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRV   40 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~   40 (93)
                      +.+.|+|++|+|||+||+.+++  ..........|+++
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~--~~~~~~~~~~~~~~   90 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIAN--ELAKRNVSSLIVYV   90 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH--HHHTTTCCEEEEEH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEEh
Confidence            5788999999999999999998  44433334555543

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=98.76  E-value=3e-08  Score=56.64  Aligned_cols=21  Identities=14%  Similarity=-0.083  Sum_probs=19.4

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+.|+|++|+|||++|+.+++
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~   60 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALAR   60 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999999987

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=98.69  E-value=5.4e-08  Score=54.42  Aligned_cols=22  Identities=14%  Similarity=0.146  Sum_probs=20.0

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +.+.|+|++|+|||++|+.+++
T Consensus        44 ~~~ll~G~~G~GKT~l~~~~~~   65 (195)
T 1jbk_A           44 NNPVLIGEPGVGKTAIVEGLAQ   65 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHH
Confidence            4578999999999999999987

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=98.65  E-value=5.8e-08  Score=54.58  Aligned_cols=22  Identities=18%  Similarity=0.178  Sum_probs=20.5

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ..+.++|++|+|||||++.+++
T Consensus        39 ~~~~l~G~~G~GKTtL~~~i~~   60 (180)
T 3ec2_A           39 KGLTFVGSPGVGKTHLAVATLK   60 (180)
T ss_dssp             CEEEECCSSSSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999999988

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=98.64  E-value=3.6e-09  Score=61.18  Aligned_cols=22  Identities=9%  Similarity=-0.047  Sum_probs=20.3

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +.+.|+|++|+||||||+.+++
T Consensus        46 ~~~ll~G~~G~GKT~l~~~~~~   67 (250)
T 1njg_A           46 HAYLFSGTRGVGKTSIARLLAK   67 (250)
T ss_dssp             SEEEEECSTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999999987

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=98.63  E-value=3.5e-07  Score=56.68  Aligned_cols=85  Identities=13%  Similarity=0.059  Sum_probs=51.6

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHHHHhhCCCCCCccccC-CCHHHHHHHHHH
Q 037564            2 SGCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIG-EDYQLKKSILRD   80 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~il~~l~~~~~~~~~~~-~~~~~l~~~l~~   80 (93)
                      .+++.|.|++|+||||||.++..  .....=..++|++.....+..     .++.++.......-.. .+.++....+..
T Consensus        61 G~iv~I~G~pGsGKTtLal~la~--~~~~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~~  133 (349)
T 2zr9_A           61 GRVIEIYGPESSGKTTVALHAVA--NAQAAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIADM  133 (349)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHH--HHHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH--HHHhCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence            36789999999999999999886  333223457788887766643     2344442211100011 456666666655


Q ss_pred             hcCC-CeEEEEeeC
Q 037564           81 YLTN-KKYFIVLDD   93 (93)
Q Consensus        81 ~L~~-kr~LlVlDD   93 (93)
                      ..+. +.-+||+|.
T Consensus       134 l~~~~~~~lIVIDs  147 (349)
T 2zr9_A          134 LVRSGALDIIVIDS  147 (349)
T ss_dssp             HHTTTCCSEEEEEC
T ss_pred             HHhcCCCCEEEEcC
Confidence            5543 445888884

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=98.63  E-value=2.3e-07  Score=57.65  Aligned_cols=85  Identities=14%  Similarity=0.102  Sum_probs=52.3

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHHHHhhCCCCCCccccC-CCHHHHHHHHHH
Q 037564            2 SGCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIG-EDYQLKKSILRD   80 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~il~~l~~~~~~~~~~~-~~~~~l~~~l~~   80 (93)
                      .+++.|.|++|+|||||+.+++.  .....-..++|++.....+..     .+++++.......-.. .+.++....+..
T Consensus        61 G~i~~I~GppGsGKSTLal~la~--~~~~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~~  133 (356)
T 3hr8_A           61 GRIVEIFGQESSGKTTLALHAIA--EAQKMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVDE  133 (356)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHH--HHHHTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH--HHHhcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHHH
Confidence            35889999999999999999987  333222346788776666644     3445543221111111 566666666666


Q ss_pred             hcC-CCeEEEEeeC
Q 037564           81 YLT-NKKYFIVLDD   93 (93)
Q Consensus        81 ~L~-~kr~LlVlDD   93 (93)
                      .++ .+.-++|+|.
T Consensus       134 l~~~~~~dlvVIDS  147 (356)
T 3hr8_A          134 LVRSGVVDLIVVDS  147 (356)
T ss_dssp             HHHTSCCSEEEEEC
T ss_pred             HhhhcCCCeEEehH
Confidence            553 3445788884

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=98.61  E-value=1.1e-07  Score=60.46  Aligned_cols=27  Identities=19%  Similarity=-0.022  Sum_probs=22.3

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFY   31 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~   31 (93)
                      .-+.|+|++|+||||||+.+++  .+...
T Consensus       131 ~~lll~Gp~G~GKTtLa~aia~--~l~~~  157 (440)
T 2z4s_A          131 NPLFIYGGVGLGKTHLLQSIGN--YVVQN  157 (440)
T ss_dssp             CCEEEECSSSSSHHHHHHHHHH--HHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH--HHHHh
Confidence            3578999999999999999998  54433

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=98.60  E-value=6.1e-08  Score=59.52  Aligned_cols=65  Identities=12%  Similarity=0.098  Sum_probs=40.5

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEe--CCCCCHHHHHHHHHHhhCCCCCCccccCCCHHHHHHHHHH
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRV--SISYDFRMVLDDIIKSVMPPSRVSVIIGEDYQLKKSILRD   80 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~--~~~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~~l~~   80 (93)
                      +++.|+|++|+|||+||.++..  . .  -..+.|++.  .+..+             .  ..     .+.+.....+.+
T Consensus       124 sviLI~GpPGsGKTtLAlqlA~--~-~--G~~VlyIs~~~eE~v~-------------~--~~-----~~le~~l~~i~~  178 (331)
T 2vhj_A          124 GMVIVTGKGNSGKTPLVHALGE--A-L--GGKDKYATVRFGEPLS-------------G--YN-----TDFNVFVDDIAR  178 (331)
T ss_dssp             EEEEEECSCSSSHHHHHHHHHH--H-H--HTTSCCEEEEBSCSST-------------T--CB-----CCHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHH--h-C--CCCEEEEEecchhhhh-------------h--hh-----cCHHHHHHHHHH
Confidence            4678999999999999999987  3 1  123456666  22211             0  00     244555555666


Q ss_pred             hcCCCeEEEEeeC
Q 037564           81 YLTNKKYFIVLDD   93 (93)
Q Consensus        81 ~L~~kr~LlVlDD   93 (93)
                      .+...+ ++|+|+
T Consensus       179 ~l~~~~-LLVIDs  190 (331)
T 2vhj_A          179 AMLQHR-VIVIDS  190 (331)
T ss_dssp             HHHHCS-EEEEEC
T ss_pred             HHhhCC-EEEEec
Confidence            665555 888885

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=98.59  E-value=5.2e-07  Score=56.26  Aligned_cols=85  Identities=11%  Similarity=0.051  Sum_probs=52.8

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHHHHhhCCCCCCccccC-CCHHHHHHHHHH
Q 037564            2 SGCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIG-EDYQLKKSILRD   80 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~il~~l~~~~~~~~~~~-~~~~~l~~~l~~   80 (93)
                      .+++.|.|.+|+||||||.++..  .....-..++|++.....+..     .++.++.......-.+ .+.+++...+..
T Consensus        74 G~li~I~G~pGsGKTtlal~la~--~~~~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~  146 (366)
T 1xp8_A           74 GRITEIYGPESGGKTTLALAIVA--QAQKAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMEL  146 (366)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHH--HHHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCChHHHHHHHHH--HHHHCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHH
Confidence            35788999999999999999887  333223467888887766643     1344442211100011 456677777766


Q ss_pred             hcCC-CeEEEEeeC
Q 037564           81 YLTN-KKYFIVLDD   93 (93)
Q Consensus        81 ~L~~-kr~LlVlDD   93 (93)
                      ..+. .--+||+|.
T Consensus       147 l~~~~~~~lVVIDs  160 (366)
T 1xp8_A          147 LVRSGAIDVVVVDS  160 (366)
T ss_dssp             HHTTTCCSEEEEEC
T ss_pred             HHhcCCCCEEEEeC
Confidence            6644 344888884

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=98.57  E-value=3.3e-07  Score=56.93  Aligned_cols=84  Identities=13%  Similarity=0.016  Sum_probs=50.6

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHHHHhhCCCCCCcc-ccC-CCHHHHHHHHH
Q 037564            2 SGCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSV-IIG-EDYQLKKSILR   79 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~il~~l~~~~~~~~-~~~-~~~~~l~~~l~   79 (93)
                      .+++.|.|.+|+||||||.+++.  .....-..++|++.....+...     ++.++... ... -.+ .+.+++.+.++
T Consensus        63 G~ii~I~G~pGsGKTtLal~la~--~~~~~g~~vlyid~E~s~~~~~-----a~~~g~~~-~~l~i~~~~~~e~~~~~~~  134 (356)
T 1u94_A           63 GRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDI-DNLLCSQPDTGEQALEICD  134 (356)
T ss_dssp             TSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEESSCCCCHHH-----HHHTTCCG-GGCEEECCSSHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEeCCCCccHHH-----HHHcCCCh-hheeeeCCCCHHHHHHHHH
Confidence            36889999999999999999887  3332334578888877666432     34444221 111 011 34555555555


Q ss_pred             HhcC-CCeEEEEeeC
Q 037564           80 DYLT-NKKYFIVLDD   93 (93)
Q Consensus        80 ~~L~-~kr~LlVlDD   93 (93)
                      ...+ .+.-+||+|.
T Consensus       135 ~l~~~~~~~lVVIDs  149 (356)
T 1u94_A          135 ALARSGAVDVIVVDS  149 (356)
T ss_dssp             HHHHHTCCSEEEEEC
T ss_pred             HHHhccCCCEEEEcC
Confidence            4432 3344888884

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=98.55  E-value=3.9e-07  Score=55.77  Aligned_cols=22  Identities=5%  Similarity=-0.008  Sum_probs=20.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +-+.++|++|+|||+||+.+++
T Consensus        46 ~~iLL~GppGtGKT~la~ala~   67 (322)
T 1xwi_A           46 RGILLFGPPGTGKSYLAKAVAT   67 (322)
T ss_dssp             SEEEEESSSSSCHHHHHHHHHH
T ss_pred             ceEEEECCCCccHHHHHHHHHH
Confidence            4578999999999999999998

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=98.53  E-value=1.2e-07  Score=56.64  Aligned_cols=22  Identities=9%  Similarity=-0.010  Sum_probs=20.1

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +-+.|+|++|+|||+||+.+++
T Consensus        52 ~~~ll~G~~GtGKT~la~~la~   73 (285)
T 3h4m_A           52 KGILLYGPPGTGKTLLAKAVAT   73 (285)
T ss_dssp             SEEEEESSSSSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHH
Confidence            4578999999999999999988

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=98.51  E-value=6.6e-08  Score=54.08  Aligned_cols=23  Identities=13%  Similarity=-0.031  Sum_probs=21.1

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +.+|.+.|++|+||||+|+.+..
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~   25 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            56899999999999999999887

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.48  E-value=3.4e-07  Score=55.26  Aligned_cols=20  Identities=15%  Similarity=-0.069  Sum_probs=19.0

Q ss_pred             eeEEcCCCCcHHHHHHHHhc
Q 037564            5 KPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +.++|++|+|||++|+.+++
T Consensus        45 ~ll~G~~G~GKt~la~~l~~   64 (323)
T 1sxj_B           45 MIISGMPGIGKTTSVHCLAH   64 (323)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHHH
Confidence            78999999999999999988

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=98.48  E-value=7.5e-07  Score=51.88  Aligned_cols=90  Identities=6%  Similarity=-0.013  Sum_probs=49.3

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCccccc----CCCeeEEEEeCCCCCHHHHHHHHHHhhCCCCC---Ccccc-C-CCHHH
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKF----YFDCHAWVRVSISYDFRMVLDDIIKSVMPPSR---VSVII-G-EDYQL   73 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~ll~~il~~l~~~~~---~~~~~-~-~~~~~   73 (93)
                      .++.|.|++|+|||||+..++.......    .-...+|+.....+....+. ++++.+.....   ..... . .+.++
T Consensus        25 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~  103 (243)
T 1n0w_A           25 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNTDH  103 (243)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCHHH
Confidence            5789999999999999999887211111    12456787766655554433 34444432110   00000 0 22232


Q ss_pred             ---HHHHHHHhcC-CCeEEEEeeC
Q 037564           74 ---KKSILRDYLT-NKKYFIVLDD   93 (93)
Q Consensus        74 ---l~~~l~~~L~-~kr~LlVlDD   93 (93)
                         ....+.+.+. .+.-++|+|+
T Consensus       104 ~~~~~~~~~~~~~~~~~~lliiD~  127 (243)
T 1n0w_A          104 QTQLLYQASAMMVESRYALLIVDS  127 (243)
T ss_dssp             HHHHHHHHHHHHHHSCEEEEEEET
T ss_pred             HHHHHHHHHHHHhcCCceEEEEeC
Confidence               3334555553 4566888985

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=98.46  E-value=1.1e-06  Score=54.18  Aligned_cols=55  Identities=7%  Similarity=-0.040  Sum_probs=37.4

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCccccc----CCCeeEEEEeCCCCCHHHHHHHHHHhhC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKF----YFDCHAWVRVSISYDFRMVLDDIIKSVM   58 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~ll~~il~~l~   58 (93)
                      .++.|.|++|+|||+||.+++.......    .-..++|++....++...+.. ++..++
T Consensus       123 ~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g  181 (343)
T 1v5w_A          123 AITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFN  181 (343)
T ss_dssp             EEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcC
Confidence            5788999999999999999887322211    124577888877777665543 344443

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=98.45  E-value=8.2e-07  Score=54.07  Aligned_cols=22  Identities=23%  Similarity=0.010  Sum_probs=20.3

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +.+.|+|++|+||||||+.+++
T Consensus        38 ~~lll~G~~GtGKT~la~~i~~   59 (324)
T 1l8q_A           38 NPIFIYGSVGTGKTHLLQAAGN   59 (324)
T ss_dssp             SSEEEECSSSSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHH
Confidence            4688999999999999999988

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=98.44  E-value=1.2e-07  Score=52.92  Aligned_cols=24  Identities=4%  Similarity=0.058  Sum_probs=21.6

Q ss_pred             CCceeeEEcCCCCcHHHHHHHHhc
Q 037564            1 FSGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         1 ~~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      |+.+|.|.|++|+||||+|+.+..
T Consensus         1 M~~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            1 MKKIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEecCCCCCHHHHHHHHHh
Confidence            456899999999999999999876

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=98.43  E-value=3.1e-07  Score=54.08  Aligned_cols=22  Identities=14%  Similarity=0.098  Sum_probs=19.9

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +-+.++|++|+|||++|+.+++
T Consensus        40 ~~vll~G~~GtGKT~la~~la~   61 (262)
T 2qz4_A           40 KGALLLGPPGCGKTLLAKAVAT   61 (262)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            4578999999999999999988

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=98.42  E-value=1.1e-07  Score=54.21  Aligned_cols=23  Identities=17%  Similarity=0.099  Sum_probs=21.2

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ||.|.|.|++|+|||||++.+..
T Consensus         1 ~RpIVi~GPSG~GK~Tl~~~L~~   23 (186)
T 1ex7_A            1 SRPIVISGPSGTGKSTLLKKLFA   23 (186)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            57899999999999999999876

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=98.42  E-value=1.1e-06  Score=53.12  Aligned_cols=22  Identities=14%  Similarity=0.031  Sum_probs=20.3

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +.+.++|++|+|||+||+.+++
T Consensus        50 ~~vLL~Gp~GtGKT~la~ala~   71 (301)
T 3cf0_A           50 KGVLFYGPPGCGKTLLAKAIAN   71 (301)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHH
T ss_pred             ceEEEECCCCcCHHHHHHHHHH
Confidence            4588999999999999999998

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=98.41  E-value=7.7e-07  Score=54.30  Aligned_cols=90  Identities=8%  Similarity=0.054  Sum_probs=52.6

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCccccc---------CC-----CeeEEEEeCCCCCHHHHHHHHHHhhCCCCC---Ccc
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKF---------YF-----DCHAWVRVSISYDFRMVLDDIIKSVMPPSR---VSV   65 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~---------~f-----~~~~wv~~~~~~~~~~ll~~il~~l~~~~~---~~~   65 (93)
                      .++.|.|.+|+|||+||.+++.......         ..     ..++|++....++...+.+ +++.++....   ...
T Consensus        99 ~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l  177 (322)
T 2i1q_A           99 SVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLDNT  177 (322)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHHTE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhcCE
Confidence            5789999999999999999886321211         11     3567888887777666554 3445543210   000


Q ss_pred             -ccC-CCHH---HHHHHHHHhcCC--CeEEEEeeC
Q 037564           66 -IIG-EDYQ---LKKSILRDYLTN--KKYFIVLDD   93 (93)
Q Consensus        66 -~~~-~~~~---~l~~~l~~~L~~--kr~LlVlDD   93 (93)
                       -.+ .+.+   ++...+.+.+..  +.-+||+|.
T Consensus       178 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDs  212 (322)
T 2i1q_A          178 FVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDS  212 (322)
T ss_dssp             EEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEEC
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEEC
Confidence             001 2333   344556565543  445888984

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=98.41  E-value=1.9e-06  Score=52.93  Aligned_cols=83  Identities=8%  Similarity=0.038  Sum_probs=50.6

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccC--CCeeEEEEeCCCCCHHHHHHHHHHhhCCCCCCccccC-CCHHHH-HHHH
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFY--FDCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIG-EDYQLK-KSIL   78 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~--f~~~~wv~~~~~~~~~~ll~~il~~l~~~~~~~~~~~-~~~~~l-~~~l   78 (93)
                      +++-|.|++|+|||||+-+++.  .....  -..++|++.....+..     -+++++.....-.-.. .+.++. ...+
T Consensus        29 GiteI~G~pGsGKTtL~Lq~~~--~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~  101 (333)
T 3io5_A           29 GLLILAGPSKSFKSNFGLTMVS--SYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMV  101 (333)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHH--HHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH--HHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHH
Confidence            3678899999999999998877  33332  2457888877777653     2566664322111111 455555 4443


Q ss_pred             HHh--c-CCCeEEEEee
Q 037564           79 RDY--L-TNKKYFIVLD   92 (93)
Q Consensus        79 ~~~--L-~~kr~LlVlD   92 (93)
                      ...  + .++.-|+|+|
T Consensus       102 ~~l~~i~~~~~~lvVID  118 (333)
T 3io5_A          102 NQLDAIERGEKVVVFID  118 (333)
T ss_dssp             HHHHTCCTTCCEEEEEE
T ss_pred             HHHHHhhccCceEEEEe
Confidence            332  3 3456788888

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=98.40  E-value=1.9e-06  Score=50.84  Aligned_cols=22  Identities=9%  Similarity=0.009  Sum_probs=19.8

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +-+.++|++|+||||||+.+++
T Consensus        46 ~~vll~G~~GtGKT~la~~la~   67 (257)
T 1lv7_A           46 KGVLMVGPPGTGKTLLAKAIAG   67 (257)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHH
Confidence            3478999999999999999988

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=98.40  E-value=1.4e-06  Score=53.36  Aligned_cols=91  Identities=10%  Similarity=0.071  Sum_probs=52.9

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhcCcccccC----CCeeEEEEeCCCCCHHHHHHHHHHhhCCCCCC---ccc-cC-CCHH
Q 037564            2 SGCKPILDSSSFDKTAFTADTYNNNHVKFY----FDCHAWVRVSISYDFRMVLDDIIKSVMPPSRV---SVI-IG-EDYQ   72 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~----f~~~~wv~~~~~~~~~~ll~~il~~l~~~~~~---~~~-~~-~~~~   72 (93)
                      ..++.|.|++|+|||+||.+++........    -..++|++....++...+.+ +++.++.....   ... .+ .+.+
T Consensus       107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~~~~~  185 (324)
T 2z43_A          107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALGLDIDNVMNNIYYIRAINTD  185 (324)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred             CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCCCHHHHhccEEEEeCCCHH
Confidence            357899999999999999998863211111    23578888887777666543 34555422100   000 01 2333


Q ss_pred             ---HHHHHHHHhcC--CCeEEEEeeC
Q 037564           73 ---LKKSILRDYLT--NKKYFIVLDD   93 (93)
Q Consensus        73 ---~l~~~l~~~L~--~kr~LlVlDD   93 (93)
                         ++...+...+.  .+.-+||+|.
T Consensus       186 ~~~~~l~~l~~~~~~~~~~~lvVIDs  211 (324)
T 2z43_A          186 HQIAIVDDLQELVSKDPSIKLIVVDS  211 (324)
T ss_dssp             HHHHHHHHHHHHHHHCTTEEEEEETT
T ss_pred             HHHHHHHHHHHHHHhccCCCEEEEeC
Confidence               34555555553  4556888884

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=98.38  E-value=2.4e-07  Score=51.54  Aligned_cols=23  Identities=4%  Similarity=-0.055  Sum_probs=20.9

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ..+|+|.|++|+||||+++.+..
T Consensus         4 ~~~i~l~G~~GsGKSTl~~~La~   26 (173)
T 1kag_A            4 KRNIFLVGPMGAGKSTIGRQLAQ   26 (173)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999877

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=98.35  E-value=8.8e-07  Score=52.72  Aligned_cols=22  Identities=18%  Similarity=0.040  Sum_probs=19.9

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +-+.++|++|+|||++|+.+++
T Consensus        65 ~~vLl~G~~GtGKT~la~~ia~   86 (272)
T 1d2n_A           65 VSVLLEGPPHSGKTALAAKIAE   86 (272)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHH
Confidence            3578999999999999999988

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=98.35  E-value=2.9e-07  Score=51.99  Aligned_cols=23  Identities=9%  Similarity=-0.033  Sum_probs=20.9

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .+++|.|++|+|||||++.+...
T Consensus        10 ~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A           10 NILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc
Confidence            57899999999999999999873

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=98.35  E-value=2.2e-07  Score=54.39  Aligned_cols=83  Identities=12%  Similarity=-0.033  Sum_probs=43.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHHHHhhCCCCCCccccC-CCHHHHHHHHHHh
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIG-EDYQLKKSILRDY   81 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~il~~l~~~~~~~~~~~-~~~~~l~~~l~~~   81 (93)
                      .++.++|..|+||||++..+.+  +...+-..+..+.......   ...+++++++....   ... .+..++.+.+.+.
T Consensus        13 ~i~litG~mGsGKTT~ll~~~~--r~~~~g~kVli~~~~~d~r---~~~~i~srlG~~~~---~~~~~~~~~i~~~i~~~   84 (223)
T 2b8t_A           13 WIEFITGPMFAGKTAELIRRLH--RLEYADVKYLVFKPKIDTR---SIRNIQSRTGTSLP---SVEVESAPEILNYIMSN   84 (223)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHH--HHHHTTCCEEEEEECCCGG---GCSSCCCCCCCSSC---CEEESSTHHHHHHHHST
T ss_pred             EEEEEECCCCCcHHHHHHHHHH--HHHhcCCEEEEEEeccCch---HHHHHHHhcCCCcc---ccccCCHHHHHHHHHHH
Confidence            5788899999999999998877  4433322333333222111   11123333322111   111 3445555666655


Q ss_pred             cCCCeE-EEEeeC
Q 037564           82 LTNKKY-FIVLDD   93 (93)
Q Consensus        82 L~~kr~-LlVlDD   93 (93)
                      +.+.++ +|++|.
T Consensus        85 ~~~~~~dvViIDE   97 (223)
T 2b8t_A           85 SFNDETKVIGIDE   97 (223)
T ss_dssp             TSCTTCCEEEECS
T ss_pred             hhCCCCCEEEEec
Confidence            544444 777773

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=98.35  E-value=2.8e-06  Score=49.00  Aligned_cols=47  Identities=11%  Similarity=-0.056  Sum_probs=29.8

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHH
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDI   53 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i   53 (93)
                      .++.|.|++|+|||||++.++.  .....-..+.|+....  ....+...+
T Consensus        24 ~~~~i~G~~GsGKTtl~~~l~~--~~~~~~~~v~~~~~~~--~~~~~~~~~   70 (235)
T 2w0m_A           24 FFIALTGEPGTGKTIFSLHFIA--KGLRDGDPCIYVTTEE--SRDSIIRQA   70 (235)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH--HHHHHTCCEEEEESSS--CHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH--HHHHCCCeEEEEEccc--CHHHHHHHH
Confidence            5789999999999999999886  2222112345555433  444444443

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=98.35  E-value=6.9e-07  Score=53.66  Aligned_cols=22  Identities=9%  Similarity=0.004  Sum_probs=20.3

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +-+.++|++|+|||++|+.++.
T Consensus        55 ~~vll~Gp~GtGKT~la~~la~   76 (297)
T 3b9p_A           55 KGLLLFGPPGNGKTLLARAVAT   76 (297)
T ss_dssp             SEEEEESSSSSCHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHH
Confidence            4688999999999999999988

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=98.34  E-value=1.1e-06  Score=52.93  Aligned_cols=21  Identities=10%  Similarity=0.018  Sum_probs=19.0

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      -+.++|++|+|||++|+.+++
T Consensus        69 ~vll~G~~GtGKT~la~~la~   89 (309)
T 3syl_A           69 HMSFTGNPGTGKTTVALKMAG   89 (309)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999998777

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=98.34  E-value=3e-07  Score=50.86  Aligned_cols=20  Identities=15%  Similarity=0.013  Sum_probs=18.7

Q ss_pred             ceeeEEcCCCCcHHHHHHHH
Q 037564            3 GCKPILDSSSFDKTAFTADT   22 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~   22 (93)
                      .+|+|.|++|+||||+|+.+
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            47899999999999999998

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=98.34  E-value=4.4e-06  Score=50.69  Aligned_cols=23  Identities=22%  Similarity=0.081  Sum_probs=20.7

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .++++++|++|+||||++..+..
T Consensus       105 g~vi~lvG~~GsGKTTl~~~LA~  127 (296)
T 2px0_A          105 SKYIVLFGSTGAGKTTTLAKLAA  127 (296)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35899999999999999999886

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=98.33  E-value=2.9e-07  Score=51.77  Aligned_cols=24  Identities=4%  Similarity=-0.020  Sum_probs=21.1

Q ss_pred             CCceeeEEcCCCCcHHHHHHHHhc
Q 037564            1 FSGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         1 ~~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      |..+|.|.|++|+||||+|+.+..
T Consensus         1 M~~~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            1 MAPKAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             -CCSEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999999876

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=98.33  E-value=1.5e-05  Score=48.67  Aligned_cols=50  Identities=18%  Similarity=0.116  Sum_probs=34.6

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHHHHh
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKS   56 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~il~~   56 (93)
                      .++.|.|.+|+||||+|.+++.+  ....-..++|++..  .+..++...++..
T Consensus        69 ~l~li~G~pG~GKTtl~l~ia~~--~a~~g~~vl~~slE--~s~~~l~~R~~~~  118 (315)
T 3bh0_A           69 NFVLIAARPSMGKTAFALKQAKN--MSDNDDVVNLHSLE--MGKKENIKRLIVT  118 (315)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH--HHTTTCEEEEEESS--SCHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHH--HHHcCCeEEEEECC--CCHHHHHHHHHHH
Confidence            57889999999999999998863  22222567777765  4556666665543

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=98.32  E-value=6.3e-07  Score=54.70  Aligned_cols=22  Identities=5%  Similarity=-0.017  Sum_probs=20.0

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +-+.++|++|+|||+||+.+++
T Consensus        52 ~~vLl~GppGtGKT~la~aia~   73 (322)
T 3eie_A           52 SGILLYGPPGTGKSYLAKAVAT   73 (322)
T ss_dssp             CEEEEECSSSSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHH
Confidence            3578999999999999999988

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=98.32  E-value=4.3e-07  Score=51.17  Aligned_cols=23  Identities=4%  Similarity=0.056  Sum_probs=20.9

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .++++|+|++|+|||||++.+..
T Consensus         5 g~~i~i~GpsGsGKSTL~~~L~~   27 (180)
T 1kgd_A            5 RKTLVLLGAHGVGRRHIKNTLIT   27 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHh
Confidence            36899999999999999999876

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=98.32  E-value=3.3e-07  Score=50.80  Aligned_cols=22  Identities=9%  Similarity=-0.073  Sum_probs=19.9

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+|.|.|++|+||||+|+.+..
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~   23 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSK   23 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999999876

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=98.30  E-value=4.1e-07  Score=51.41  Aligned_cols=23  Identities=9%  Similarity=-0.058  Sum_probs=20.8

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ..+++|.|++|+|||||++.+..
T Consensus         2 g~ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            2 KKLYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHhc
Confidence            46889999999999999999975

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=98.29  E-value=4.4e-07  Score=51.79  Aligned_cols=22  Identities=14%  Similarity=0.158  Sum_probs=20.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+|.|.|++|+||||+|+.+..
T Consensus        19 ~~I~l~G~~GsGKSTla~~L~~   40 (202)
T 3t61_A           19 GSIVVMGVSGSGKSSVGEAIAE   40 (202)
T ss_dssp             SCEEEECSTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998876

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=98.28  E-value=5.2e-07  Score=52.25  Aligned_cols=36  Identities=3%  Similarity=-0.047  Sum_probs=25.9

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEe
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRV   40 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~   40 (93)
                      +.+.|+|++|+||||||+.+++  ..........|+..
T Consensus        53 ~~~ll~G~~G~GKT~la~~l~~--~~~~~~~~~~~~~~   88 (242)
T 3bos_A           53 QAIYLWGPVKSGRTHLIHAACA--RANELERRSFYIPL   88 (242)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEEG
T ss_pred             CeEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEEH
Confidence            5688999999999999999987  43332233445554

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=98.28  E-value=1.3e-06  Score=54.12  Aligned_cols=21  Identities=5%  Similarity=-0.024  Sum_probs=19.5

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      -+.++|++|+|||+||+.+++
T Consensus        86 ~iLL~GppGtGKT~la~ala~  106 (355)
T 2qp9_X           86 GILLYGPPGTGKSYLAKAVAT  106 (355)
T ss_dssp             CEEEECSTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            478899999999999999998

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.27  E-value=1.6e-06  Score=56.10  Aligned_cols=22  Identities=9%  Similarity=0.006  Sum_probs=20.5

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +.+.++|++|+|||++|+.+++
T Consensus        78 ~~lLL~GppGtGKTtla~~la~   99 (516)
T 1sxj_A           78 RAAMLYGPPGIGKTTAAHLVAQ   99 (516)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5788999999999999999988

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=98.27  E-value=6.2e-07  Score=51.07  Aligned_cols=22  Identities=18%  Similarity=0.028  Sum_probs=20.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|.|++|+|||||++.+..
T Consensus         8 ~ii~l~Gp~GsGKSTl~~~L~~   29 (205)
T 3tr0_A            8 NLFIISAPSGAGKTSLVRALVK   29 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECcCCCCHHHHHHHHHh
Confidence            5899999999999999999876

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=98.26  E-value=5.7e-07  Score=50.56  Aligned_cols=23  Identities=9%  Similarity=-0.065  Sum_probs=20.6

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+.|.+.|++|+||||+|+.+..
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35789999999999999999876

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=98.26  E-value=5.5e-06  Score=50.53  Aligned_cols=22  Identities=9%  Similarity=-0.076  Sum_probs=20.4

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|+|++|+||||++..++.
T Consensus       105 ~vi~ivG~~GsGKTTl~~~LA~  126 (306)
T 1vma_A          105 FVIMVVGVNGTGKTTSCGKLAK  126 (306)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEEcCCCChHHHHHHHHHH
Confidence            5899999999999999999887

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=98.26  E-value=5.4e-07  Score=51.44  Aligned_cols=22  Identities=9%  Similarity=-0.186  Sum_probs=20.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+|.|.|++|+||||+++.+..
T Consensus        26 ~~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           26 VRIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            4789999999999999999876

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=98.25  E-value=2.6e-06  Score=52.76  Aligned_cols=22  Identities=9%  Similarity=-0.067  Sum_probs=20.1

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +-+.++|++|+|||+||+.+++
T Consensus       118 ~~vLl~GppGtGKT~la~aia~  139 (357)
T 3d8b_A          118 KGILLFGPPGTGKTLIGKCIAS  139 (357)
T ss_dssp             SEEEEESSTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            4678999999999999999988

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=98.25  E-value=6.5e-07  Score=50.35  Aligned_cols=23  Identities=4%  Similarity=-0.019  Sum_probs=20.8

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +.+|.|.|++|+||||+++.+..
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999887

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=98.24  E-value=7e-07  Score=51.01  Aligned_cols=22  Identities=9%  Similarity=-0.047  Sum_probs=20.4

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+|+|.|++|+||||+++.+..
T Consensus        26 ~~i~l~G~sGsGKSTl~~~La~   47 (200)
T 3uie_A           26 CVIWVTGLSGSGKSTLACALNQ   47 (200)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999999887

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=98.24  E-value=6.2e-07  Score=51.36  Aligned_cols=22  Identities=9%  Similarity=0.024  Sum_probs=20.3

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+|.|.|++|+||||+++.+..
T Consensus        13 ~~i~l~G~sGsGKsTl~~~L~~   34 (204)
T 2qor_A           13 PPLVVCGPSGVGKGTLIKKVLS   34 (204)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5889999999999999999876

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=98.23  E-value=1.9e-06  Score=54.80  Aligned_cols=22  Identities=5%  Similarity=-0.008  Sum_probs=20.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +-+.++|++|+|||+||+.+++
T Consensus       168 ~~vLL~GppGtGKT~lA~aia~  189 (444)
T 2zan_A          168 RGILLFGPPGTGKSYLAKAVAT  189 (444)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            4578999999999999999998

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=98.23  E-value=7.3e-07  Score=49.51  Aligned_cols=24  Identities=4%  Similarity=-0.027  Sum_probs=21.3

Q ss_pred             CCceeeEEcCCCCcHHHHHHHHhc
Q 037564            1 FSGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         1 ~~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      |..+|.|.|++|+||||+|+.+..
T Consensus         1 m~~~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            1 MTEPIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CCCCEEEESCTTSSHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999999876

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=98.23  E-value=8.1e-07  Score=51.12  Aligned_cols=22  Identities=9%  Similarity=0.039  Sum_probs=20.5

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|.|++|+|||||++.+..
T Consensus         9 ~~i~l~GpsGsGKsTl~~~L~~   30 (208)
T 3tau_A            9 LLIVLSGPSGVGKGTVREAVFK   30 (208)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECcCCCCHHHHHHHHHh
Confidence            5899999999999999999986

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=98.23  E-value=8.4e-07  Score=50.68  Aligned_cols=22  Identities=14%  Similarity=0.098  Sum_probs=20.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+|+|.|++|+|||||++.+..
T Consensus        30 ~~i~l~G~~GsGKSTl~~~L~~   51 (200)
T 4eun_A           30 RHVVVMGVSGSGKTTIAHGVAD   51 (200)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999999876

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=98.23  E-value=7.4e-07  Score=50.25  Aligned_cols=23  Identities=9%  Similarity=0.033  Sum_probs=20.6

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ..+|.+.|++|+||||+++.+..
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35789999999999999999876

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=98.22  E-value=9.7e-07  Score=50.47  Aligned_cols=23  Identities=9%  Similarity=-0.103  Sum_probs=20.5

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ..+|+|.|++|+||||+++.+..
T Consensus         2 ~~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            2 TYIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHT
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999865

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=98.22  E-value=7.1e-07  Score=51.29  Aligned_cols=22  Identities=5%  Similarity=0.004  Sum_probs=20.3

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|.|++|+|||||++.+..
T Consensus        23 ~~v~I~G~sGsGKSTl~~~l~~   44 (208)
T 3c8u_A           23 QLVALSGAPGSGKSTLSNPLAA   44 (208)
T ss_dssp             EEEEEECCTTSCTHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4889999999999999999877

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.21  E-value=1.4e-06  Score=55.36  Aligned_cols=22  Identities=14%  Similarity=0.046  Sum_probs=20.0

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +=+.++|++|+|||+||+.+++
T Consensus       207 rGiLL~GPPGtGKT~lakAiA~  228 (428)
T 4b4t_K          207 RGVLLYGPPGTGKTMLVKAVAN  228 (428)
T ss_dssp             CEEEEESCTTTTHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            3478899999999999999998

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=98.21  E-value=9.9e-07  Score=50.24  Aligned_cols=23  Identities=9%  Similarity=0.030  Sum_probs=20.7

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ..+++|.|++|+||||+++.+..
T Consensus         6 g~~i~l~G~~GsGKSTl~~~L~~   28 (207)
T 2j41_A            6 GLLIVLSGPSGVGKGTVRKRIFE   28 (207)
T ss_dssp             CCEEEEECSTTSCHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35899999999999999999876

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=98.21  E-value=7.9e-07  Score=53.73  Aligned_cols=22  Identities=9%  Similarity=-0.098  Sum_probs=20.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +.+.++|++|+|||+||+.+++
T Consensus        37 ~~lLl~GppGtGKT~la~aiA~   58 (293)
T 3t15_A           37 LILGIWGGKGQGKSFQCELVFR   58 (293)
T ss_dssp             SEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4678899999999999999998

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=98.20  E-value=7.9e-07  Score=50.04  Aligned_cols=22  Identities=9%  Similarity=0.018  Sum_probs=20.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+|.|.|++|+||||+|+.+..
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999987

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=98.20  E-value=1e-06  Score=49.11  Aligned_cols=22  Identities=14%  Similarity=0.135  Sum_probs=20.0

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+|+|.|++|+||||+++.+..
T Consensus         9 ~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            9 HIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHH
Confidence            4789999999999999998876

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=98.19  E-value=9.9e-06  Score=49.05  Aligned_cols=22  Identities=14%  Similarity=-0.013  Sum_probs=20.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+|+|.|++|+||||||+.+..
T Consensus        32 ~ii~I~G~sGsGKSTla~~L~~   53 (290)
T 1odf_A           32 LFIFFSGPQGSGKSFTSIQIYN   53 (290)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998877

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=98.19  E-value=7.3e-06  Score=51.69  Aligned_cols=55  Identities=4%  Similarity=-0.048  Sum_probs=34.7

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCccccc----CCCeeEEEEeCCCCCHHHHHHHHHHhhC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKF----YFDCHAWVRVSISYDFRMVLDDIIKSVM   58 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~ll~~il~~l~   58 (93)
                      .++.|.|++|+|||||+..++-......    .-...+|+.....+....+ ..+++.++
T Consensus       179 ei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~g  237 (400)
T 3lda_A          179 SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFG  237 (400)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTT
T ss_pred             cEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcC
Confidence            5789999999999999997653111111    1234678776665555443 33555554

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=98.19  E-value=9.7e-07  Score=49.38  Aligned_cols=22  Identities=18%  Similarity=0.332  Sum_probs=19.1

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++++|++|+|||||++.++.
T Consensus        10 ei~~l~G~nGsGKSTl~~~~~~   31 (171)
T 4gp7_A           10 SLVVLIGSSGSGKSTFAKKHFK   31 (171)
T ss_dssp             EEEEEECCTTSCHHHHHHHHSC
T ss_pred             EEEEEECCCCCCHHHHHHHHcc
Confidence            4789999999999999996543

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.19  E-value=1.6e-06  Score=54.70  Aligned_cols=22  Identities=9%  Similarity=-0.000  Sum_probs=19.9

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +=+.++|++|+|||.||+.+++
T Consensus       183 rGvLL~GPPGTGKTllAkAiA~  204 (405)
T 4b4t_J          183 KGVILYGPPGTGKTLLARAVAH  204 (405)
T ss_dssp             CCEEEESCSSSSHHHHHHHHHH
T ss_pred             CceEEeCCCCCCHHHHHHHHHH
Confidence            4467899999999999999998

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=98.19  E-value=9.7e-07  Score=49.48  Aligned_cols=22  Identities=9%  Similarity=0.051  Sum_probs=20.0

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ..|.|.|++|+||||+++.+..
T Consensus        12 ~~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A           12 PNILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEeCCCCCHHHHHHHHHH
Confidence            4689999999999999999876

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=98.19  E-value=1e-06  Score=50.42  Aligned_cols=22  Identities=9%  Similarity=0.072  Sum_probs=20.1

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +.++|+|++|+|||||++.+..
T Consensus         5 ~~i~lvGpsGaGKSTLl~~L~~   26 (198)
T 1lvg_A            5 RPVVLSGPSGAGKSTLLKKLFQ   26 (198)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            5789999999999999998875

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.18  E-value=1.7e-06  Score=55.07  Aligned_cols=22  Identities=9%  Similarity=-0.016  Sum_probs=20.1

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +=|.++|++|+|||+||+.+++
T Consensus       216 rGvLL~GPPGtGKTllAkAiA~  237 (437)
T 4b4t_L          216 KGVLLYGPPGTGKTLLAKAVAA  237 (437)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHH
Confidence            4578899999999999999998

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=98.18  E-value=1.1e-06  Score=49.49  Aligned_cols=23  Identities=13%  Similarity=0.058  Sum_probs=20.6

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ..+|+|.|++|+||||+|+.+..
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999876

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.18  E-value=1.3e-06  Score=55.51  Aligned_cols=22  Identities=9%  Similarity=-0.011  Sum_probs=20.1

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +=|.++|++|+|||.||+.+++
T Consensus       216 rGvLLyGPPGTGKTllAkAiA~  237 (434)
T 4b4t_M          216 KGALMYGPPGTGKTLLARACAA  237 (434)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             CeeEEECcCCCCHHHHHHHHHH
Confidence            4578899999999999999998

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=98.17  E-value=4.9e-06  Score=51.53  Aligned_cols=54  Identities=7%  Similarity=0.068  Sum_probs=33.5

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCC----CeeEEEEeCCCCCHHHHHHHHHHhh
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYF----DCHAWVRVSISYDFRMVLDDIIKSV   57 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f----~~~~wv~~~~~~~~~~ll~~il~~l   57 (93)
                      .++.|.|++|+|||||+..++.........    ..++|+.....+....+ ..+++..
T Consensus       132 ~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~  189 (349)
T 1pzn_A          132 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNR  189 (349)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHc
Confidence            588999999999999999988732111111    23478776555443333 3344443

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.16  E-value=1.8e-06  Score=55.33  Aligned_cols=22  Identities=14%  Similarity=-0.005  Sum_probs=20.0

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +=|.++|++|+|||.||+.+++
T Consensus       244 rGILLyGPPGTGKTlLAkAiA~  265 (467)
T 4b4t_H          244 KGILLYGPPGTGKTLCARAVAN  265 (467)
T ss_dssp             SEEEECSCTTSSHHHHHHHHHH
T ss_pred             CceEeeCCCCCcHHHHHHHHHh
Confidence            4577899999999999999998

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=98.16  E-value=1.3e-06  Score=50.12  Aligned_cols=22  Identities=14%  Similarity=-0.005  Sum_probs=20.3

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+|+|.|++|+|||||++.+..
T Consensus         7 ~~i~i~G~~GsGKSTl~~~l~~   28 (211)
T 3asz_A            7 FVIGIAGGTASGKTTLAQALAR   28 (211)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999877

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=98.16  E-value=1.1e-06  Score=49.08  Aligned_cols=22  Identities=5%  Similarity=-0.074  Sum_probs=19.9

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ..|.|.|++|+||||+|+.+..
T Consensus         5 ~~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            5 KNIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            3689999999999999999877

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.16  E-value=1.7e-05  Score=50.51  Aligned_cols=23  Identities=9%  Similarity=-0.113  Sum_probs=20.6

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +++|.++|++|+||||++..++.
T Consensus        97 ~~vI~lvG~~GsGKTTt~~kLA~  119 (433)
T 3kl4_A           97 PFIIMLVGVQGSGKTTTAGKLAY  119 (433)
T ss_dssp             SEEEEECCCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998886

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=98.16  E-value=1.3e-06  Score=50.46  Aligned_cols=22  Identities=14%  Similarity=-0.014  Sum_probs=20.0

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+|+|.|++|+||||+++.+..
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998865

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=98.16  E-value=1.4e-06  Score=49.70  Aligned_cols=24  Identities=17%  Similarity=0.134  Sum_probs=21.3

Q ss_pred             CCceeeEEcCCCCcHHHHHHHHhc
Q 037564            1 FSGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         1 ~~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      |..+|+|.|++|+||||+++.+..
T Consensus         1 m~~~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            1 MRGIVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            356899999999999999999876

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=98.16  E-value=5.8e-06  Score=51.66  Aligned_cols=22  Identities=9%  Similarity=0.004  Sum_probs=20.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +-+.|+|++|+|||+||+.+++
T Consensus       149 ~~vLL~GppGtGKT~la~aia~  170 (389)
T 3vfd_A          149 RGLLLFGPPGNGKTMLAKAVAA  170 (389)
T ss_dssp             SEEEEESSTTSCHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            4688999999999999999987

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=98.16  E-value=1.2e-06  Score=49.31  Aligned_cols=23  Identities=13%  Similarity=-0.032  Sum_probs=20.6

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +.+|+|.|++|+||||+|+.+..
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999998876

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=98.15  E-value=1.1e-06  Score=52.06  Aligned_cols=22  Identities=14%  Similarity=0.024  Sum_probs=19.9

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+|.|.|++|+||||||+.+..
T Consensus         2 ~li~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            4789999999999999999876

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=98.15  E-value=1.5e-06  Score=51.12  Aligned_cols=21  Identities=14%  Similarity=-0.048  Sum_probs=19.7

Q ss_pred             ceeeEEcCCCCcHHHHHHHHh
Q 037564            3 GCKPILDSSSFDKTAFTADTY   23 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~   23 (93)
                      .+|+|.|++|+|||||++.+.
T Consensus        28 ~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           28 LRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            479999999999999999998

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=98.15  E-value=1.2e-06  Score=49.70  Aligned_cols=21  Identities=14%  Similarity=0.183  Sum_probs=19.5

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .|+|.|++|+||||+++.+..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            689999999999999999887

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=98.15  E-value=4e-06  Score=56.89  Aligned_cols=22  Identities=14%  Similarity=0.024  Sum_probs=20.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +=|.++|++|+|||+||+.+++
T Consensus       239 ~GILL~GPPGTGKT~LAraiA~  260 (806)
T 3cf2_A          239 RGILLYGPPGTGKTLIARAVAN  260 (806)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHT
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4578999999999999999999

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=98.15  E-value=1.4e-06  Score=49.39  Aligned_cols=23  Identities=9%  Similarity=-0.055  Sum_probs=20.7

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ..+|+|.|++|+||||+|+.+..
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999877

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=98.15  E-value=4.3e-06  Score=45.49  Aligned_cols=22  Identities=0%  Similarity=-0.219  Sum_probs=19.8

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.|+|++|+|||++|+.+++.
T Consensus        26 ~vll~G~~GtGKt~lA~~i~~~   47 (145)
T 3n70_A           26 AVWLYGAPGTGRMTGARYLHQF   47 (145)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHS
T ss_pred             CEEEECCCCCCHHHHHHHHHHh
Confidence            4789999999999999999873

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=98.15  E-value=2e-05  Score=50.13  Aligned_cols=50  Identities=12%  Similarity=0.001  Sum_probs=34.3

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhcCcccccC-CCeeEEEEeCCCCCHHHHHHHHHH
Q 037564            2 SGCKPILDSSSFDKTAFTADTYNNNHVKFY-FDCHAWVRVSISYDFRMVLDDIIK   55 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~-f~~~~wv~~~~~~~~~~ll~~il~   55 (93)
                      +.++.|.|.+|+||||+|..++.+  .... =..++|++..  -+..++...++.
T Consensus       200 G~l~ii~G~pg~GKT~lal~ia~~--~a~~~g~~vl~~slE--~~~~~l~~R~~~  250 (444)
T 2q6t_A          200 GSLNIIAARPAMGKTAFALTIAQN--AALKEGVGVGIYSLE--MPAAQLTLRMMC  250 (444)
T ss_dssp             TCEEEEEECTTSCHHHHHHHHHHH--HHHTTCCCEEEEESS--SCHHHHHHHHHH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHH--HHHhCCCeEEEEECC--CCHHHHHHHHHH
Confidence            357889999999999999998873  3321 2346676654  345666666654

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=98.14  E-value=1.5e-06  Score=50.41  Aligned_cols=22  Identities=18%  Similarity=0.025  Sum_probs=20.1

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|+|++|+|||||++.+..
T Consensus        24 ~~~~lvGpsGsGKSTLl~~L~g   45 (218)
T 1z6g_A           24 YPLVICGPSGVGKGTLIKKLLN   45 (218)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            5789999999999999998876

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=98.14  E-value=1.3e-06  Score=49.81  Aligned_cols=23  Identities=4%  Similarity=-0.175  Sum_probs=20.9

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +.+|.|.|++|+||||+|+.+..
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Confidence            35789999999999999999987

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=98.14  E-value=1.5e-06  Score=49.16  Aligned_cols=22  Identities=5%  Similarity=-0.058  Sum_probs=20.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+|+|.|++|+||||+|+.+..
T Consensus        10 ~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A           10 NIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999876

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=98.14  E-value=1.7e-06  Score=49.69  Aligned_cols=22  Identities=9%  Similarity=-0.004  Sum_probs=19.9

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|.|++|+|||||++.+..
T Consensus        21 ei~~l~GpnGsGKSTLl~~l~g   42 (207)
T 1znw_A           21 RVVVLSGPSAVGKSTVVRCLRE   42 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            5889999999999999998764

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=98.14  E-value=1.7e-06  Score=48.91  Aligned_cols=21  Identities=14%  Similarity=0.067  Sum_probs=19.1

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .++|+|++|+|||||++.++.
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g   22 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVE   22 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999998876

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=98.13  E-value=1.3e-05  Score=58.78  Aligned_cols=85  Identities=13%  Similarity=0.006  Sum_probs=52.2

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHHHHhhCCCCCCccccC-CCHHHHHHHHHH
Q 037564            2 SGCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIG-EDYQLKKSILRD   80 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~il~~l~~~~~~~~~~~-~~~~~l~~~l~~   80 (93)
                      .+.+.|+|++|+|||+||.++..  +....=..+.|+......+...     ++.++.....-.-.. .+.++..+.++.
T Consensus      1427 g~~vll~GppGtGKT~LA~ala~--ea~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~~ 1499 (2050)
T 3cmu_A         1427 GRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDA 1499 (2050)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHH--HHHTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHHH
Confidence            36789999999999999999887  3333333567777777666554     344432211100001 445566666665


Q ss_pred             hcC-CCeEEEEeeC
Q 037564           81 YLT-NKKYFIVLDD   93 (93)
Q Consensus        81 ~L~-~kr~LlVlDD   93 (93)
                      ..+ .+..+||+|.
T Consensus      1500 lvr~~~~~lVVIDs 1513 (2050)
T 3cmu_A         1500 LARSGAVDVIVVDS 1513 (2050)
T ss_dssp             HHHHTCCSEEEESC
T ss_pred             HHhcCCCCEEEEcC
Confidence            543 4556888985

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=98.13  E-value=1.4e-06  Score=49.68  Aligned_cols=22  Identities=5%  Similarity=-0.102  Sum_probs=19.8

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+|+|.|++|+||||+++.+..
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            3689999999999999998876

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=98.12  E-value=2.2e-05  Score=49.94  Aligned_cols=23  Identities=13%  Similarity=-0.098  Sum_probs=20.5

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ..++.++|++|+||||++..++.
T Consensus        98 ~~vi~i~G~~GsGKTT~~~~LA~  120 (425)
T 2ffh_A           98 RNLWFLVGLQGSGKTTTAAKLAL  120 (425)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35889999999999999998887

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=98.12  E-value=1.8e-06  Score=48.70  Aligned_cols=22  Identities=14%  Similarity=-0.070  Sum_probs=20.1

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ..|.|.|++|+||||+++.+..
T Consensus        11 ~~I~l~G~~GsGKSTv~~~La~   32 (184)
T 1y63_A           11 INILITGTPGTGKTSMAEMIAA   32 (184)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999998877

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=98.12  E-value=2e-06  Score=50.14  Aligned_cols=23  Identities=9%  Similarity=0.014  Sum_probs=20.8

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ..+++|.|++|+|||||.+.+..
T Consensus        16 G~ii~l~GpsGsGKSTLlk~L~g   38 (219)
T 1s96_A           16 GTLYIVSAPSGAGKSSLIQALLK   38 (219)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHhc
Confidence            35889999999999999999876

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=98.12  E-value=1e-06  Score=55.46  Aligned_cols=39  Identities=8%  Similarity=-0.029  Sum_probs=27.3

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCccccc---CCCeeEEEEeCCCC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKF---YFDCHAWVRVSISY   44 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~---~f~~~~wv~~~~~~   44 (93)
                      ..++|+|++|+|||||++.+.+  .+..   .+. ++++-+.+..
T Consensus       175 Qr~~IvG~sG~GKTtLl~~Iar--~i~~~~~~v~-~I~~lIGER~  216 (422)
T 3ice_A          175 QRGLIVAPPKAGKTMLLQNIAQ--SIAYNHPDCV-LMVLLIDERP  216 (422)
T ss_dssp             CEEEEECCSSSSHHHHHHHHHH--HHHHHCTTSE-EEEEEESSCH
T ss_pred             cEEEEecCCCCChhHHHHHHHH--HHhhcCCCee-EEEEEecCCh
Confidence            4689999999999999998877  3322   222 4456666543

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=98.12  E-value=1.9e-06  Score=49.32  Aligned_cols=22  Identities=14%  Similarity=-0.010  Sum_probs=20.4

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+|+|.|++|+||||+++.+..
T Consensus        22 ~~i~i~G~~GsGKSTl~~~L~~   43 (207)
T 2qt1_A           22 FIIGISGVTNSGKTTLAKNLQK   43 (207)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999999887

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=98.11  E-value=2.1e-06  Score=49.35  Aligned_cols=22  Identities=5%  Similarity=0.117  Sum_probs=20.3

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ++++|.|++|+|||||++.+..
T Consensus        20 ~~ivl~GPSGaGKsTL~~~L~~   41 (197)
T 3ney_A           20 KTLVLIGASGVGRSHIKNALLS   41 (197)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECcCCCCHHHHHHHHHh
Confidence            5889999999999999999886

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=98.11  E-value=4.9e-06  Score=53.46  Aligned_cols=51  Identities=10%  Similarity=0.072  Sum_probs=34.1

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCccccc-CCCeeEEEEeCCCCC-HHHHHHHHHH
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKF-YFDCHAWVRVSISYD-FRMVLDDIIK   55 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~-~f~~~~wv~~~~~~~-~~~ll~~il~   55 (93)
                      ..++|+|.+|+|||||+..+..+  ... .-+.+++..+.+... ..++.+++.+
T Consensus       152 q~~~i~G~sGvGKTtL~~~l~~~--~~~~~~~i~V~~~iGerttev~el~~~l~~  204 (473)
T 1sky_E          152 GKIGLFGGAGVGKTVLIQELIHN--IAQEHGGISVFAGVGERTREGNDLYHEMKD  204 (473)
T ss_dssp             CEEEEECCSSSCHHHHHHHHHHH--HHHHTCCCEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCccHHHHHHHhh--hhhccCcEEEEeeeccCchHHHHHHHHhhh
Confidence            46789999999999999998873  332 224456667766543 3455555543

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=98.11  E-value=2e-06  Score=49.22  Aligned_cols=23  Identities=4%  Similarity=-0.190  Sum_probs=20.9

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +.+|+|.|++|+||||+++.+..
T Consensus        10 ~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A           10 GKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHH
Confidence            35899999999999999999987

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=98.11  E-value=1.8e-06  Score=47.83  Aligned_cols=22  Identities=5%  Similarity=-0.064  Sum_probs=20.3

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+|+|.|++|+||||+|+.+..
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999999877

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=98.11  E-value=2e-06  Score=49.02  Aligned_cols=22  Identities=9%  Similarity=-0.074  Sum_probs=20.0

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+|.|.|++|+||||+|+.+..
T Consensus        21 ~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           21 MRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999999876

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=98.10  E-value=5.8e-06  Score=53.35  Aligned_cols=22  Identities=14%  Similarity=0.024  Sum_probs=20.0

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +-+.|+|++|+|||++|+.+++
T Consensus       239 ~~vLL~GppGtGKT~lAraia~  260 (489)
T 3hu3_A          239 RGILLYGPPGTGKTLIARAVAN  260 (489)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEECcCCCCHHHHHHHHHH
Confidence            3578999999999999999987

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=98.10  E-value=1.2e-06  Score=48.08  Aligned_cols=22  Identities=5%  Similarity=-0.099  Sum_probs=20.4

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ..+.|+|++|+|||||++.++.
T Consensus        37 ~~~~l~G~~G~GKTtL~~~i~~   58 (149)
T 2kjq_A           37 QFIYVWGEEGAGKSHLLQAWVA   58 (149)
T ss_dssp             SEEEEESSSTTTTCHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999999988

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.10  E-value=2.4e-05  Score=49.96  Aligned_cols=23  Identities=13%  Similarity=-0.025  Sum_probs=20.5

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +.+|.++|.+|+||||++..++.
T Consensus       100 p~vIlivG~~G~GKTTt~~kLA~  122 (443)
T 3dm5_A          100 PTILLMVGIQGSGKTTTVAKLAR  122 (443)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECcCCCCHHHHHHHHHH
Confidence            46899999999999999988876

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=98.09  E-value=2.2e-05  Score=48.58  Aligned_cols=50  Identities=10%  Similarity=-0.096  Sum_probs=33.9

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHHHH
Q 037564            2 SGCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIK   55 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~il~   55 (93)
                      +.++.|.|.+|+||||+|..++.+  ....=..+.|++..  -+..++...++.
T Consensus        46 G~LiiIaG~pG~GKTt~al~ia~~--~a~~g~~Vl~fSlE--ms~~ql~~Rlls   95 (338)
T 4a1f_A           46 GSLVIIGARPSMGKTSLMMNMVLS--ALNDDRGVAVFSLE--MSAEQLALRALS   95 (338)
T ss_dssp             TCEEEEEECTTSCHHHHHHHHHHH--HHHTTCEEEEEESS--SCHHHHHHHHHH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHH--HHHcCCeEEEEeCC--CCHHHHHHHHHH
Confidence            357889999999999999998873  32222345666653  455666666544

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=98.09  E-value=2.1e-06  Score=50.53  Aligned_cols=22  Identities=5%  Similarity=-0.050  Sum_probs=20.1

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+|+|.|+.|+|||||++.+..
T Consensus        26 ~iigI~G~~GsGKSTl~k~L~~   47 (245)
T 2jeo_A           26 FLIGVSGGTASGKSTVCEKIME   47 (245)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998876

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=98.09  E-value=1.9e-06  Score=48.37  Aligned_cols=22  Identities=9%  Similarity=-0.028  Sum_probs=20.0

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ..|++.|++|+||||+++.+..
T Consensus         5 ~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            5 QAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999999876

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=98.09  E-value=2.1e-06  Score=52.49  Aligned_cols=22  Identities=9%  Similarity=-0.127  Sum_probs=20.3

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|.|++|+|||||++.+..
T Consensus        91 ~ivgI~G~sGsGKSTL~~~L~g  112 (312)
T 3aez_A           91 FIIGVAGSVAVGKSTTARVLQA  112 (312)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEECCCCchHHHHHHHHHh
Confidence            4899999999999999999877

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=98.09  E-value=2e-06  Score=48.46  Aligned_cols=22  Identities=9%  Similarity=-0.099  Sum_probs=20.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+|.+.|++|+||||+++.+..
T Consensus        14 ~~i~l~G~~GsGKsT~~~~L~~   35 (186)
T 2yvu_A           14 IVVWLTGLPGSGKTTIATRLAD   35 (186)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHH
Confidence            5789999999999999999877

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=98.09  E-value=2e-06  Score=51.79  Aligned_cols=24  Identities=4%  Similarity=0.058  Sum_probs=21.5

Q ss_pred             CCceeeEEcCCCCcHHHHHHHHhc
Q 037564            1 FSGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         1 ~~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      |+.+|.|.|++|+||||+|+.+..
T Consensus         1 M~~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            1 MKKIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999999876

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=98.09  E-value=5.4e-06  Score=53.36  Aligned_cols=21  Identities=10%  Similarity=0.031  Sum_probs=19.5

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      -+.++|++|+|||+||+.++.
T Consensus        51 gvLL~GppGtGKT~Laraia~   71 (476)
T 2ce7_A           51 GILLVGPPGTGKTLLARAVAG   71 (476)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            477999999999999999988

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=98.08  E-value=2.1e-06  Score=49.11  Aligned_cols=23  Identities=4%  Similarity=-0.065  Sum_probs=20.9

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +.+|+|.|++|+||||+++.+..
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            9 GALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35899999999999999999987

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=98.08  E-value=4.1e-06  Score=54.58  Aligned_cols=22  Identities=9%  Similarity=0.043  Sum_probs=20.3

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ..+.++|++|+||||||+.++.
T Consensus       109 ~~vll~Gp~GtGKTtlar~ia~  130 (543)
T 3m6a_A          109 PILCLAGPPGVGKTSLAKSIAK  130 (543)
T ss_dssp             CEEEEESSSSSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4788999999999999999987

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.08  E-value=3.5e-05  Score=46.78  Aligned_cols=22  Identities=9%  Similarity=-0.081  Sum_probs=20.0

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .++++.|.+|+||||++..++.
T Consensus        99 ~vi~i~G~~G~GKTT~~~~la~  120 (297)
T 1j8m_F           99 YVIMLVGVQGTGKTTTAGKLAY  120 (297)
T ss_dssp             EEEEEECSSCSSTTHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5889999999999999998886

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=98.08  E-value=2e-06  Score=52.83  Aligned_cols=22  Identities=9%  Similarity=0.036  Sum_probs=20.3

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ..+.++|++|+||||||+.++.
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~   73 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIAS   73 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHH
Confidence            4688999999999999999987

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=98.08  E-value=1.5e-06  Score=48.39  Aligned_cols=22  Identities=18%  Similarity=0.104  Sum_probs=19.8

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +.+.|+|++|+|||++|+.+++
T Consensus        44 ~~vll~G~~G~GKT~la~~~~~   65 (187)
T 2p65_A           44 NNPILLGDPGVGKTAIVEGLAI   65 (187)
T ss_dssp             CEEEEESCGGGCHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHH
Confidence            4578999999999999999987

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.07  E-value=3.4e-06  Score=53.61  Aligned_cols=22  Identities=14%  Similarity=0.052  Sum_probs=20.0

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +=|.++|++|+|||.||+.+++
T Consensus       217 rGvLLyGPPGTGKTlLAkAiA~  238 (437)
T 4b4t_I          217 KGVILYGAPGTGKTLLAKAVAN  238 (437)
T ss_dssp             SEEEEESSTTTTHHHHHHHHHH
T ss_pred             CCCceECCCCchHHHHHHHHHH
Confidence            4478899999999999999998

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=98.07  E-value=4.6e-06  Score=50.50  Aligned_cols=22  Identities=9%  Similarity=0.083  Sum_probs=20.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ..+.|+|++|+|||++|+.+++
T Consensus        39 ~~vll~G~~GtGKT~la~~i~~   60 (324)
T 1hqc_A           39 EHLLLFGPPGLGKTTLAHVIAH   60 (324)
T ss_dssp             CCCEEECCTTCCCHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHH
Confidence            4678999999999999999987

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=98.07  E-value=1.4e-06  Score=48.72  Aligned_cols=22  Identities=14%  Similarity=-0.158  Sum_probs=16.1

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+|.|.|++|+||||+|+.+..
T Consensus         6 ~~I~l~G~~GsGKST~a~~La~   27 (183)
T 2vli_A            6 PIIWINGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             CEEEEECCC----CHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999999876

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=98.07  E-value=4e-05  Score=49.42  Aligned_cols=49  Identities=8%  Similarity=-0.042  Sum_probs=33.7

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccC-CCeeEEEEeCCCCCHHHHHHHHHH
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFY-FDCHAWVRVSISYDFRMVLDDIIK   55 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~-f~~~~wv~~~~~~~~~~ll~~il~   55 (93)
                      .++.|.|.+|+||||||.+++.  ..... =..++|++...  +..++...++.
T Consensus       243 ~l~li~G~pG~GKT~lal~~a~--~~a~~~g~~vl~~s~E~--s~~~l~~r~~~  292 (503)
T 1q57_A          243 EVIMVTSGSGMVMSTFVRQQAL--QWGTAMGKKVGLAMLEE--SVEETAEDLIG  292 (503)
T ss_dssp             CEEEEEESSCHHHHHHHHHHHH--HHTTTSCCCEEEEESSS--CHHHHHHHHHH
T ss_pred             eEEEEeecCCCCchHHHHHHHH--HHHHhcCCcEEEEeccC--CHHHHHHHHHH
Confidence            5788999999999999999887  33322 23566776544  45566666544

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=98.07  E-value=1.7e-05  Score=45.68  Aligned_cols=22  Identities=9%  Similarity=0.016  Sum_probs=20.1

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|.|++|+|||||++.++.
T Consensus        26 ~~~~l~G~nGsGKSTll~~l~g   47 (231)
T 4a74_A           26 AITEVFGEFGSGKTQLAHTLAV   47 (231)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999999875

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=98.06  E-value=2.5e-06  Score=48.47  Aligned_cols=23  Identities=9%  Similarity=-0.078  Sum_probs=21.0

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +..|+|.|+.|+||||+++.+..
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~   26 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIME   26 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHH
Confidence            45799999999999999999987

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=98.06  E-value=7.6e-06  Score=46.88  Aligned_cols=86  Identities=9%  Similarity=-0.012  Sum_probs=45.5

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHHHHhhCCCCCCccccC-CCHHHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIG-EDYQLKKSILRDYL   82 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~il~~l~~~~~~~~~~~-~~~~~l~~~l~~~L   82 (93)
                      .|++-|.-|+||||.++.+.+  .+...-....+..-+......+.++.++..-........-.- .+..+....+...|
T Consensus         2 fI~~EG~DGsGKsTq~~~L~~--~L~~~g~~v~~treP~~t~~~~~ir~~l~~~~~~~~~~~ll~~a~r~~~~~~I~~~L   79 (197)
T 3hjn_A            2 FITFEGIDGSGKSTQIQLLAQ--YLEKRGKKVILKREPGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTEIKQYL   79 (197)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEESSCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH--HHHHCCCcEEEEECCCCCcHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence            478889999999999999988  554433333443333333445555555543221100000000 23334455666666


Q ss_pred             CCCeEEEEee
Q 037564           83 TNKKYFIVLD   92 (93)
Q Consensus        83 ~~kr~LlVlD   92 (93)
                      ...+ .+|.|
T Consensus        80 ~~g~-~Vi~D   88 (197)
T 3hjn_A           80 SEGY-AVLLD   88 (197)
T ss_dssp             TTTC-EEEEE
T ss_pred             HCCC-eEEec
Confidence            5554 45555

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=98.06  E-value=2.5e-06  Score=48.58  Aligned_cols=22  Identities=9%  Similarity=-0.009  Sum_probs=20.1

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+|+|.|++|+||||+++.+..
T Consensus        16 ~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           16 SVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999999876

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=98.06  E-value=2.1e-06  Score=51.83  Aligned_cols=22  Identities=9%  Similarity=0.084  Sum_probs=20.1

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+|.+.|++|+||||+|+.+..
T Consensus        34 ~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           34 TAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             EEEEEECCTTSCTHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5788999999999999999976

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=98.06  E-value=2.5e-06  Score=48.05  Aligned_cols=21  Identities=14%  Similarity=0.053  Sum_probs=19.6

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +|+|.|++|+||||+++.+..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999887

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=98.05  E-value=2.7e-06  Score=50.34  Aligned_cols=21  Identities=10%  Similarity=-0.054  Sum_probs=19.5

Q ss_pred             ceeeEEcCCCCcHHHHHHHHh
Q 037564            3 GCKPILDSSSFDKTAFTADTY   23 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~   23 (93)
                      .+|+|.|++|+||||+++.+.
T Consensus        28 ~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           28 PVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            479999999999999999987

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=98.05  E-value=2.4e-06  Score=50.75  Aligned_cols=22  Identities=9%  Similarity=0.058  Sum_probs=20.1

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+|.+.|++|+||||+|+.+..
T Consensus         5 ~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            5 MLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHH
Confidence            4789999999999999999876

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=98.05  E-value=2.6e-06  Score=48.38  Aligned_cols=22  Identities=14%  Similarity=-0.111  Sum_probs=20.4

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+|+|.|+.|+||||+++.+..
T Consensus         9 ~~I~i~G~~GsGKST~~~~La~   30 (203)
T 1uf9_A            9 IIIGITGNIGSGKSTVAALLRS   30 (203)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999887

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=98.05  E-value=2.7e-06  Score=47.02  Aligned_cols=21  Identities=5%  Similarity=-0.156  Sum_probs=19.4

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .|+|.|++|+||||+|+.+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999877

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=98.04  E-value=3.1e-06  Score=48.40  Aligned_cols=22  Identities=18%  Similarity=-0.055  Sum_probs=20.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+|+|.|++|+||||+++.+..
T Consensus        23 ~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           23 LVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998876

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=98.04  E-value=1.7e-06  Score=50.35  Aligned_cols=21  Identities=14%  Similarity=0.020  Sum_probs=15.8

Q ss_pred             ceeeEEcCCCCcHHHHHHHHh
Q 037564            3 GCKPILDSSSFDKTAFTADTY   23 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~   23 (93)
                      .+++|.|++|+|||||++.+.
T Consensus        28 ~ii~l~Gp~GsGKSTl~~~L~   48 (231)
T 3lnc_A           28 VILVLSSPSGCGKTTVANKLL   48 (231)
T ss_dssp             CEEEEECSCC----CHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            589999999999999999998

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=98.03  E-value=2.8e-05  Score=47.83  Aligned_cols=22  Identities=18%  Similarity=-0.044  Sum_probs=20.3

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++++|++|+||||+++.+..
T Consensus       130 ~vi~lvG~nGaGKTTll~~Lag  151 (328)
T 3e70_C          130 YVIMFVGFNGSGKTTTIAKLAN  151 (328)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999999887

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=98.03  E-value=1.3e-05  Score=51.91  Aligned_cols=20  Identities=10%  Similarity=0.117  Sum_probs=19.1

Q ss_pred             eeEEcCCCCcHHHHHHHHhc
Q 037564            5 KPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +.|+|++|+|||+||+.++.
T Consensus        67 vLL~GppGtGKTtLaraIa~   86 (499)
T 2dhr_A           67 VLLVGPPGVGKTHLARAVAG   86 (499)
T ss_dssp             EEEECSSSSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999988

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=98.01  E-value=1.8e-05  Score=48.03  Aligned_cols=22  Identities=14%  Similarity=-0.077  Sum_probs=19.5

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .++.+.|++|+|||++|+.+++
T Consensus        49 ~~~L~~G~~G~GKT~la~~la~   70 (324)
T 3u61_B           49 HIILHSPSPGTGKTTVAKALCH   70 (324)
T ss_dssp             SEEEECSSTTSSHHHHHHHHHH
T ss_pred             eEEEeeCcCCCCHHHHHHHHHH
Confidence            4667788899999999999988

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=98.01  E-value=4.2e-06  Score=46.48  Aligned_cols=22  Identities=14%  Similarity=-0.047  Sum_probs=19.9

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .++++.|+.|+|||||.+.+..
T Consensus        34 e~v~L~G~nGaGKTTLlr~l~g   55 (158)
T 1htw_A           34 IMVYLNGDLGAGKTTLTRGMLQ   55 (158)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999998876

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=98.01  E-value=1.2e-06  Score=50.12  Aligned_cols=22  Identities=9%  Similarity=-0.065  Sum_probs=19.8

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+|+|.|++|+||||+++.+..
T Consensus         1 ~~I~i~G~~GsGKsTl~~~L~~   22 (214)
T 1gtv_A            1 MLIAIEGVDGAGKRTLVEKLSG   22 (214)
T ss_dssp             CEEEEEEEEEEEHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            3689999999999999999876

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=98.01  E-value=3e-06  Score=49.94  Aligned_cols=20  Identities=10%  Similarity=0.117  Sum_probs=19.0

Q ss_pred             eeEEcCCCCcHHHHHHHHhc
Q 037564            5 KPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +.|+|++|+|||||++.++.
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~   71 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAG   71 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999987

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=98.01  E-value=3.5e-06  Score=48.91  Aligned_cols=22  Identities=9%  Similarity=0.009  Sum_probs=20.1

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ..|.|.|++|+||||+|+.+..
T Consensus         8 ~~I~l~G~~GsGKsT~a~~La~   29 (227)
T 1zd8_A            8 LRAVIMGAPGSGKGTVSSRITT   29 (227)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999999876

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=98.01  E-value=4e-06  Score=49.30  Aligned_cols=22  Identities=14%  Similarity=-0.006  Sum_probs=20.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|.|++|+|||||.+.+..
T Consensus        32 e~~~iiG~nGsGKSTLl~~l~G   53 (235)
T 3tif_A           32 EFVSIMGPSGSGKSTMLNIIGC   53 (235)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCcHHHHHHHHhc
Confidence            4789999999999999999876

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=98.01  E-value=3.6e-06  Score=47.11  Aligned_cols=23  Identities=13%  Similarity=-0.071  Sum_probs=20.5

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ..+|++.|++|+||||+++.+..
T Consensus         5 g~~i~l~G~~GsGKST~~~~L~~   27 (179)
T 2pez_A            5 GCTVWLTGLSGAGKTTVSMALEE   27 (179)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35789999999999999999876

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=98.01  E-value=4.1e-06  Score=51.02  Aligned_cols=22  Identities=14%  Similarity=0.031  Sum_probs=20.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|+|++|+||||+++.+..
T Consensus       103 ~vi~lvG~nGsGKTTll~~Lag  124 (304)
T 1rj9_A          103 RVVLVVGVNGVGKTTTIAKLGR  124 (304)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHH
Confidence            5899999999999999999875

>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*

Probab=98.01  E-value=8.1e-05  Score=48.16  Aligned_cols=52  Identities=12%  Similarity=0.071  Sum_probs=38.4

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccc-cCCCeeEEEEeCCCC-CHHHHHHHHHHh
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVK-FYFDCHAWVRVSISY-DFRMVLDDIIKS   56 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~-~~f~~~~wv~~~~~~-~~~~ll~~il~~   56 (93)
                      .-++|.|.+|+|||+|+..+.+  .+. .+-+.++|+-+.+.. ...++.+++.+.
T Consensus       166 qr~gIfgg~GvGKT~L~~~l~~--~~a~~~~~v~V~~~iGER~rEv~e~~~~~~~~  219 (498)
T 1fx0_B          166 GKIGLFGGAGVGKTVLIMELIN--NIAKAHGGVSVFGGVGERTREGNDLYMEMKES  219 (498)
T ss_dssp             CCEEEEECSSSSHHHHHHHHHH--HTTTTCSSCEEEEEESCCSHHHHHHHHHHHHT
T ss_pred             CeEEeecCCCCCchHHHHHHHH--HHHhhCCCEEEEEEcccCcHHHHHHHHhhhcc
Confidence            4578999999999999998877  332 234677888887654 556777777764

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=98.01  E-value=3.1e-06  Score=50.77  Aligned_cols=20  Identities=15%  Similarity=0.106  Sum_probs=19.1

Q ss_pred             eeEEcCCCCcHHHHHHHHhc
Q 037564            5 KPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +.++|++|+|||||++.++.
T Consensus        47 vlL~Gp~GtGKTtLakala~   66 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVAN   66 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            78999999999999999987

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=98.00  E-value=3.4e-06  Score=49.79  Aligned_cols=22  Identities=9%  Similarity=-0.023  Sum_probs=20.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+|+|.|++|+||||+|+.+..
T Consensus        23 ~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           23 FLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998877

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=98.00  E-value=4e-06  Score=48.91  Aligned_cols=22  Identities=14%  Similarity=-0.047  Sum_probs=20.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|.|++|+|||||.+.+..
T Consensus        31 e~~~iiG~nGsGKSTLl~~l~G   52 (224)
T 2pcj_A           31 EFVSIIGASGSGKSTLLYILGL   52 (224)
T ss_dssp             CEEEEEECTTSCHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            4789999999999999999876

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=98.00  E-value=3.6e-06  Score=49.03  Aligned_cols=23  Identities=9%  Similarity=-0.023  Sum_probs=21.1

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +++|.|.|++|+||+|.|+.+..
T Consensus        29 ~kiI~llGpPGsGKgTqa~~L~~   51 (217)
T 3umf_A           29 AKVIFVLGGPGSGKGTQCEKLVQ   51 (217)
T ss_dssp             CEEEEEECCTTCCHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999999887

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=98.00  E-value=2.4e-05  Score=49.93  Aligned_cols=48  Identities=15%  Similarity=0.126  Sum_probs=32.3

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCccccc-CCCeeEEEEeCCCCCHHHHHHHHH
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKF-YFDCHAWVRVSISYDFRMVLDDII   54 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~-~f~~~~wv~~~~~~~~~~ll~~il   54 (93)
                      .++.|.|.+|+|||||+..++.  .... .-..+.|++...  +..++...++
T Consensus       204 ~liiI~G~pG~GKTtl~l~ia~--~~~~~~g~~Vl~~s~E~--s~~~l~~r~~  252 (454)
T 2r6a_A          204 DLIIVAARPSVGKTAFALNIAQ--NVATKTNENVAIFSLEM--SAQQLVMRML  252 (454)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH--HHHHHSSCCEEEEESSS--CHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH--HHHHhCCCcEEEEECCC--CHHHHHHHHH
Confidence            5789999999999999999887  3332 122466766543  3455555543

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=98.00  E-value=3.9e-06  Score=48.46  Aligned_cols=22  Identities=5%  Similarity=-0.059  Sum_probs=20.1

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ..|.+.|++|+||||+|+.+..
T Consensus         5 ~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            5 IRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999999877

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=98.00  E-value=3.6e-06  Score=48.37  Aligned_cols=21  Identities=5%  Similarity=-0.034  Sum_probs=19.0

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .|.|.|++|+||||+|+.+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999866

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=98.00  E-value=3.9e-06  Score=48.27  Aligned_cols=23  Identities=9%  Similarity=-0.049  Sum_probs=20.6

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +.+|.|.|++|+||||+++.+..
T Consensus        25 ~~~i~~~G~~GsGKsT~~~~l~~   47 (211)
T 1m7g_A           25 GLTIWLTGLSASGKSTLAVELEH   47 (211)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35789999999999999999876

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=98.00  E-value=2.3e-05  Score=56.87  Aligned_cols=84  Identities=13%  Similarity=0.004  Sum_probs=52.9

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHHHHhhCCCCCCccccC-CCHHHHHHHHHH
Q 037564            2 SGCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIG-EDYQLKKSILRD   80 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~il~~l~~~~~~~~~~~-~~~~~l~~~l~~   80 (93)
                      .+++.|.|++|+||||||.+++.  .....-..++|++.....+...     ++.++.....-.-.+ .+.+++...++.
T Consensus       383 G~lilI~G~pGsGKTtLaLq~a~--~~~~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~i~~~~~~e~~l~~l~~  455 (1706)
T 3cmw_A          383 GRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDA  455 (1706)
T ss_dssp             TSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHH--HHHHhCCCeEEEEccCchHHHH-----HHHcCCCHHHeEEcCCCCHHHHHHHHHH
Confidence            46889999999999999999887  3333334678888777766531     455543221111112 456666666665


Q ss_pred             hcC-CCeEEEEee
Q 037564           81 YLT-NKKYFIVLD   92 (93)
Q Consensus        81 ~L~-~kr~LlVlD   92 (93)
                      ..+ .+.-++|+|
T Consensus       456 lv~~~~~~lVVID  468 (1706)
T 3cmw_A          456 LARSGAVDVIVVD  468 (1706)
T ss_dssp             HHHHTCCSEEEES
T ss_pred             HHHhcCCCEEEEC
Confidence            443 344588888

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=97.99  E-value=1.8e-05  Score=47.57  Aligned_cols=22  Identities=14%  Similarity=0.140  Sum_probs=20.3

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|.|++|+|||||++.++.
T Consensus        36 ~~~~i~G~~G~GKTTl~~~ia~   57 (296)
T 1cr0_A           36 EVIMVTSGSGMGKSTFVRQQAL   57 (296)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHH
Confidence            5789999999999999999887

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=97.99  E-value=3.9e-06  Score=47.95  Aligned_cols=22  Identities=9%  Similarity=-0.106  Sum_probs=20.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+|+|.|+.|+||||+++.+..
T Consensus        13 ~iIgltG~~GSGKSTva~~L~~   34 (192)
T 2grj_A           13 MVIGVTGKIGTGKSTVCEILKN   34 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998876

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=97.99  E-value=4.2e-06  Score=49.69  Aligned_cols=23  Identities=9%  Similarity=-0.096  Sum_probs=20.8

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ...|+|.|++|+||||+++.+..
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999999876

>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}

Probab=97.99  E-value=4.3e-06  Score=51.16  Aligned_cols=23  Identities=4%  Similarity=0.098  Sum_probs=20.5

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ++||+|.|-||+||||.+..+..
T Consensus        48 aKVIAIaGKGGVGKTTtavNLA~   70 (314)
T 3fwy_A           48 AKVFAVYGKGGIGKSTTSSNLSA   70 (314)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCccCHHHHHHHHHH
Confidence            68999999999999998887765

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.99  E-value=4.7e-06  Score=47.54  Aligned_cols=22  Identities=9%  Similarity=0.036  Sum_probs=19.9

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|+|++|+|||||++.++.
T Consensus         2 ~~i~i~G~nG~GKTTll~~l~g   23 (189)
T 2i3b_A            2 RHVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHH
T ss_pred             CEEEEECCCCChHHHHHHHHHh
Confidence            4789999999999999998876

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=97.98  E-value=3.4e-05  Score=56.71  Aligned_cols=84  Identities=13%  Similarity=0.004  Sum_probs=52.8

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHHHHhhCCCCCCccccC-CCHHHHHHHHHH
Q 037564            2 SGCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIG-EDYQLKKSILRD   80 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~il~~l~~~~~~~~~~~-~~~~~l~~~l~~   80 (93)
                      .+++.|.|++|+||||||.+++.  .....-..++|++.....+...     ++.++.....-.-.+ .+.+++...++.
T Consensus       383 G~lilI~G~pGsGKTtLaLqia~--~~a~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~~  455 (2050)
T 3cmu_A          383 GRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDA  455 (2050)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHH--HHHTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHHH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHH--HHHhcCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHHH
Confidence            36889999999999999999987  3333334577887777666432     445543221111111 566677766665


Q ss_pred             hcC-CCeEEEEee
Q 037564           81 YLT-NKKYFIVLD   92 (93)
Q Consensus        81 ~L~-~kr~LlVlD   92 (93)
                      ..+ .+.-++|+|
T Consensus       456 lv~~~~~~lIVID  468 (2050)
T 3cmu_A          456 LARSGAVDVIVVD  468 (2050)
T ss_dssp             HHHHTCCSEEEES
T ss_pred             HHHhcCCcEEEEC
Confidence            442 344588888

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=97.98  E-value=4.3e-06  Score=48.36  Aligned_cols=22  Identities=9%  Similarity=-0.239  Sum_probs=20.0

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ..|.|.|++|+||||+++.+..
T Consensus         6 ~~I~l~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A            6 LKVMISGAPASGKGTQCELIKT   27 (222)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999876

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=97.97  E-value=4.3e-06  Score=48.08  Aligned_cols=21  Identities=5%  Similarity=-0.086  Sum_probs=19.0

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .|+|.|++|+||||+|+.+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999876

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=97.97  E-value=4.6e-05  Score=46.17  Aligned_cols=23  Identities=13%  Similarity=-0.098  Sum_probs=20.7

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ..+++++|.+|+||||++..++.
T Consensus        98 ~~~i~i~g~~G~GKTT~~~~la~  120 (295)
T 1ls1_A           98 RNLWFLVGLQGSGKTTTAAKLAL  120 (295)
T ss_dssp             SEEEEEECCTTTTHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35889999999999999999887

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=97.97  E-value=5.2e-06  Score=48.85  Aligned_cols=23  Identities=4%  Similarity=0.120  Sum_probs=20.8

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .+++|+|++|+|||||.+.+..-
T Consensus        32 e~~~i~G~nGsGKSTLl~~l~Gl   54 (237)
T 2cbz_A           32 ALVAVVGQVGCGKSSLLSALLAE   54 (237)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTC
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            47899999999999999999873

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=97.97  E-value=4.6e-06  Score=48.07  Aligned_cols=22  Identities=5%  Similarity=-0.079  Sum_probs=19.8

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+|+|.|+.|+||||+++.+..
T Consensus         5 ~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            5 YIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999998865

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=97.97  E-value=5.2e-06  Score=49.55  Aligned_cols=22  Identities=23%  Similarity=0.146  Sum_probs=20.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|.|++|+|||||.+.+..
T Consensus        33 e~~~liG~nGsGKSTLlk~l~G   54 (262)
T 1b0u_A           33 DVISIIGSSGSGKSTFLRCINF   54 (262)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            4789999999999999999876

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=97.96  E-value=4.8e-06  Score=50.67  Aligned_cols=22  Identities=14%  Similarity=-0.065  Sum_probs=20.3

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+|+|.|++|+|||||++.+..
T Consensus        81 ~iigI~G~~GsGKSTl~~~L~~  102 (308)
T 1sq5_A           81 YIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999998877

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=97.96  E-value=2.5e-06  Score=47.99  Aligned_cols=23  Identities=22%  Similarity=0.128  Sum_probs=20.4

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ..+++|+|.+|+|||||++.+..
T Consensus         2 ~~~v~IvG~SGsGKSTL~~~L~~   24 (171)
T 2f1r_A            2 SLILSIVGTSDSGKTTLITRMMP   24 (171)
T ss_dssp             -CEEEEEESCHHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999999887

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=97.96  E-value=4.9e-06  Score=51.44  Aligned_cols=22  Identities=14%  Similarity=0.083  Sum_probs=20.3

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+|+|.|++|+||||||..+..
T Consensus         8 ~lI~I~GptgSGKTtla~~La~   29 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAK   29 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHH
Confidence            4899999999999999999887

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.96  E-value=5e-06  Score=51.04  Aligned_cols=21  Identities=14%  Similarity=-0.029  Sum_probs=19.6

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +|+|.|++|+||||+++.+..
T Consensus        94 iigI~GpsGSGKSTl~~~L~~  114 (321)
T 3tqc_A           94 IIGIAGSVAVGKSTTSRVLKA  114 (321)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            899999999999999998866

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=97.95  E-value=5.4e-06  Score=48.91  Aligned_cols=22  Identities=14%  Similarity=0.095  Sum_probs=20.1

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|.|++|+|||||.+.+..
T Consensus        25 e~~~liG~nGsGKSTLl~~l~G   46 (240)
T 2onk_A           25 DYCVLLGPTGAGKSVFLELIAG   46 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHhC
Confidence            4789999999999999999876

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=97.95  E-value=5.5e-06  Score=46.56  Aligned_cols=22  Identities=9%  Similarity=0.007  Sum_probs=20.3

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .++.|.|.+|+|||||+..+..
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~   26 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVA   26 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999999887

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=97.95  E-value=5.3e-06  Score=50.97  Aligned_cols=23  Identities=9%  Similarity=0.083  Sum_probs=20.8

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ..+|.|+|++|+||||||+.+..
T Consensus         5 ~~~i~i~GptGsGKTtla~~La~   27 (323)
T 3crm_A            5 PPAIFLMGPTAAGKTDLAMALAD   27 (323)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999887

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=97.94  E-value=6.1e-06  Score=49.09  Aligned_cols=22  Identities=9%  Similarity=0.081  Sum_probs=20.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|.|++|+|||||.+.+..
T Consensus        34 e~~~liG~nGsGKSTLlk~l~G   55 (257)
T 1g6h_A           34 DVTLIIGPNGSGKSTLINVITG   55 (257)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            4789999999999999999876

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.94  E-value=7e-05  Score=47.73  Aligned_cols=23  Identities=9%  Similarity=-0.075  Sum_probs=20.6

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +++|.++|.+|+||||++..++.
T Consensus       100 ~~vI~ivG~~GvGKTT~a~~LA~  122 (433)
T 2xxa_A          100 PAVVLMAGLQGAGKTTSVGKLGK  122 (433)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999999886

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=97.94  E-value=6.1e-06  Score=49.39  Aligned_cols=22  Identities=9%  Similarity=0.031  Sum_probs=20.3

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|.|++|+|||||++.+..
T Consensus        38 e~~~liG~nGsGKSTLl~~l~G   59 (266)
T 4g1u_C           38 EMVAIIGPNGAGKSTLLRLLTG   59 (266)
T ss_dssp             CEEEEECCTTSCHHHHHHHHTS
T ss_pred             CEEEEECCCCCcHHHHHHHHhc
Confidence            5789999999999999999876

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=97.94  E-value=5.9e-06  Score=50.30  Aligned_cols=22  Identities=14%  Similarity=-0.028  Sum_probs=20.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++++|++|+||||+++.++.
T Consensus       101 ~vi~lvG~nGsGKTTll~~Lag  122 (302)
T 3b9q_A          101 AVIMIVGVNGGGKTTSLGKLAH  122 (302)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHH
Confidence            5899999999999999998876

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=97.94  E-value=5.9e-06  Score=47.99  Aligned_cols=22  Identities=9%  Similarity=0.069  Sum_probs=20.3

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|.|++|+|||||.+.++.
T Consensus        36 e~~~iiG~NGsGKSTLlk~l~G   57 (214)
T 1sgw_A           36 NVVNFHGPNGIGKTTLLKTIST   57 (214)
T ss_dssp             CCEEEECCTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            4789999999999999999877

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=97.94  E-value=6.1e-06  Score=49.64  Aligned_cols=22  Identities=14%  Similarity=0.206  Sum_probs=20.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|.|++|+|||||.+.+..
T Consensus        35 e~~~iiGpnGsGKSTLl~~l~G   56 (275)
T 3gfo_A           35 EVTAILGGNGVGKSTLFQNFNG   56 (275)
T ss_dssp             SEEEEECCTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHc
Confidence            4789999999999999999876

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=97.94  E-value=4.7e-06  Score=49.78  Aligned_cols=20  Identities=10%  Similarity=0.117  Sum_probs=19.0

Q ss_pred             eeEEcCCCCcHHHHHHHHhc
Q 037564            5 KPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +.|+|++|+|||||++.++.
T Consensus        76 vll~Gp~GtGKTtl~~~i~~   95 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAG   95 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCcChHHHHHHHHHH
Confidence            78999999999999999987

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.94  E-value=6.3e-06  Score=48.55  Aligned_cols=22  Identities=9%  Similarity=0.054  Sum_probs=20.3

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|.|++|+|||||.+.++.
T Consensus        33 e~~~l~G~nGsGKSTLl~~l~G   54 (240)
T 1ji0_A           33 QIVTLIGANGAGKTTTLSAIAG   54 (240)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            4789999999999999999876

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=97.93  E-value=2.6e-06  Score=46.30  Aligned_cols=22  Identities=5%  Similarity=-0.210  Sum_probs=19.6

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.|+|++|+|||++|+.+++.
T Consensus        29 ~vll~G~~GtGKt~lA~~i~~~   50 (143)
T 3co5_A           29 PVFLTGEAGSPFETVARYFHKN   50 (143)
T ss_dssp             CEEEEEETTCCHHHHHGGGCCT
T ss_pred             cEEEECCCCccHHHHHHHHHHh
Confidence            4779999999999999999873

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=97.93  E-value=5.6e-06  Score=48.74  Aligned_cols=22  Identities=14%  Similarity=0.063  Sum_probs=19.9

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ..|.|.|++|+||||+|+.+..
T Consensus        30 ~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           30 GRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999876

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=97.93  E-value=3.2e-06  Score=50.00  Aligned_cols=22  Identities=14%  Similarity=-0.111  Sum_probs=20.1

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+|.+.|++|+||||+|+.+..
T Consensus        33 ~~i~l~G~~GsGKSTla~~L~~   54 (253)
T 2p5t_B           33 IAILLGGQSGAGKTTIHRIKQK   54 (253)
T ss_dssp             EEEEEESCGGGTTHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999999876

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=97.93  E-value=1e-05  Score=47.12  Aligned_cols=46  Identities=11%  Similarity=-0.047  Sum_probs=30.1

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHH
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDD   52 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~   52 (93)
                      .++.|.|++|+||||||.+++.  .....-..++|++...  +..++.+.
T Consensus        24 ~~~~i~G~~GsGKTtl~~~~~~--~~~~~~~~v~~~~~e~--~~~~~~~~   69 (247)
T 2dr3_A           24 NVVLLSGGPGTGKTIFSQQFLW--NGLKMGEPGIYVALEE--HPVQVRQN   69 (247)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH--HHHHTTCCEEEEESSS--CHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH--HHHhcCCeEEEEEccC--CHHHHHHH
Confidence            5789999999999999988876  2222223456666443  34444443

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=97.93  E-value=6.6e-06  Score=49.19  Aligned_cols=22  Identities=14%  Similarity=0.055  Sum_probs=20.3

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|.|++|+|||||.+.+..
T Consensus        51 ei~~liG~NGsGKSTLlk~l~G   72 (263)
T 2olj_A           51 EVVVVIGPSGSGKSTFLRCLNL   72 (263)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTT
T ss_pred             CEEEEEcCCCCcHHHHHHHHHc
Confidence            4789999999999999999876

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=97.93  E-value=5.1e-06  Score=48.03  Aligned_cols=22  Identities=14%  Similarity=-0.120  Sum_probs=20.0

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|.|++|+|||||++.+..
T Consensus        23 e~~~liG~nGsGKSTLl~~l~G   44 (208)
T 3b85_A           23 TIVFGLGPAGSGKTYLAMAKAV   44 (208)
T ss_dssp             SEEEEECCTTSSTTHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            4789999999999999999875

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=97.93  E-value=6.8e-06  Score=48.09  Aligned_cols=22  Identities=14%  Similarity=0.048  Sum_probs=20.5

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|.|++|+|||||.+.++.
T Consensus        35 e~~~i~G~nGsGKSTLl~~l~G   56 (229)
T 2pze_A           35 QLLAVAGSTGAGKTSLLMMIMG   56 (229)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            4789999999999999999987

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=97.93  E-value=7.2e-06  Score=48.57  Aligned_cols=22  Identities=5%  Similarity=0.066  Sum_probs=20.5

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|.|++|+|||||.+.+..
T Consensus        30 e~~~l~G~nGsGKSTLlk~l~G   51 (250)
T 2d2e_A           30 EVHALMGPNGAGKSTLGKILAG   51 (250)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            4789999999999999999887

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.92  E-value=7.8e-06  Score=46.09  Aligned_cols=22  Identities=14%  Similarity=-0.058  Sum_probs=20.3

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .++.|.|++|+|||||++.+..
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~   28 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIP   28 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHH
Confidence            5789999999999999999887

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=97.92  E-value=7.2e-06  Score=48.53  Aligned_cols=22  Identities=18%  Similarity=0.070  Sum_probs=20.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|.|++|+|||||.+.++.
T Consensus        36 e~~~i~G~nGsGKSTLl~~l~G   57 (247)
T 2ff7_A           36 EVIGIVGRSGSGKSTLTKLIQR   57 (247)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            4789999999999999999876

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=97.91  E-value=8.4e-06  Score=49.66  Aligned_cols=22  Identities=9%  Similarity=-0.014  Sum_probs=20.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .-+.++|++|+|||+||..+++
T Consensus       153 ~~lll~G~~GtGKT~La~aia~  174 (308)
T 2qgz_A          153 KGLYLYGDMGIGKSYLLAAMAH  174 (308)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            5678999999999999999988

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=97.91  E-value=1.1e-05  Score=47.72  Aligned_cols=23  Identities=9%  Similarity=-0.093  Sum_probs=20.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .-+.|+|++|+|||++|+.+++.
T Consensus        30 ~~vll~G~~GtGKt~la~~i~~~   52 (265)
T 2bjv_A           30 KPVLIIGERGTGKELIASRLHYL   52 (265)
T ss_dssp             SCEEEECCTTSCHHHHHHHHHHT
T ss_pred             CCEEEECCCCCcHHHHHHHHHHh
Confidence            35789999999999999999883

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=97.91  E-value=6.9e-06  Score=49.40  Aligned_cols=22  Identities=14%  Similarity=-0.022  Sum_probs=19.7

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+|+|.|++|+||||+|+.+..
T Consensus        76 ~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           76 YVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998863

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=97.91  E-value=3e-05  Score=47.57  Aligned_cols=23  Identities=17%  Similarity=0.010  Sum_probs=20.5

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ..+|+++|.+|+||||++..++.
T Consensus       105 ~~vI~ivG~~G~GKTT~~~~LA~  127 (320)
T 1zu4_A          105 LNIFMLVGVNGTGKTTSLAKMAN  127 (320)
T ss_dssp             CEEEEEESSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35899999999999999998876

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=97.91  E-value=9.5e-05  Score=47.21  Aligned_cols=49  Identities=18%  Similarity=0.137  Sum_probs=31.7

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHHH
Q 037564            2 SGCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDII   54 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~il   54 (93)
                      +.++.|.|.+|+||||+|.+++.+  ....=..+.|++...  +..++...++
T Consensus       197 G~liiIaG~pG~GKTtlal~ia~~--~a~~g~~vl~fSlEm--s~~ql~~R~~  245 (444)
T 3bgw_A          197 RNFVLIAARPSMGKTAFALKQAKN--MSDNDDVVNLHSLEM--GKKENIKRLI  245 (444)
T ss_dssp             SCEEEEEECSSSSHHHHHHHHHHH--HHHTTCEEEEECSSS--CTTHHHHHHH
T ss_pred             CcEEEEEeCCCCChHHHHHHHHHH--HHHcCCEEEEEECCC--CHHHHHHHHH
Confidence            357889999999999999998873  322223466665543  3334444444

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=97.91  E-value=7.7e-06  Score=48.75  Aligned_cols=22  Identities=9%  Similarity=0.137  Sum_probs=20.3

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|.|++|+|||||.+.+..
T Consensus        47 e~~~i~G~nGsGKSTLl~~l~G   68 (260)
T 2ghi_A           47 TTCALVGHTGSGKSTIAKLLYR   68 (260)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            4789999999999999999876

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=97.90  E-value=8.2e-06  Score=48.80  Aligned_cols=22  Identities=14%  Similarity=0.216  Sum_probs=20.5

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|.|++|+|||||.+.++.
T Consensus        47 e~~~l~G~NGsGKSTLlk~l~G   68 (267)
T 2zu0_C           47 EVHAIMGPNGSGKSTLSATLAG   68 (267)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            4789999999999999999887

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=97.90  E-value=7.4e-06  Score=48.32  Aligned_cols=22  Identities=9%  Similarity=-0.106  Sum_probs=20.1

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|.|++|+|||||.+.++.
T Consensus        29 e~~~i~G~nGsGKSTLl~~l~G   50 (243)
T 1mv5_A           29 SIIAFAGPSGGGKSTIFSLLER   50 (243)
T ss_dssp             EEEEEECCTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            4789999999999999999876

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=97.90  E-value=7.5e-06  Score=49.32  Aligned_cols=22  Identities=18%  Similarity=0.196  Sum_probs=20.1

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ..+.++|++|+|||++|+.++.
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~   69 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAA   69 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            3688999999999999999988

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.90  E-value=8e-06  Score=48.62  Aligned_cols=22  Identities=9%  Similarity=-0.076  Sum_probs=20.3

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|.|++|+|||||.+.++.
T Consensus        42 ei~~l~G~NGsGKSTLlk~l~G   63 (256)
T 1vpl_A           42 EIFGLIGPNGAGKTTTLRIIST   63 (256)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTT
T ss_pred             cEEEEECCCCCCHHHHHHHHhc
Confidence            4789999999999999999876

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=97.90  E-value=8.2e-06  Score=48.93  Aligned_cols=22  Identities=14%  Similarity=0.126  Sum_probs=20.3

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|.|++|+|||||.+.++.
T Consensus        46 e~~~i~G~nGsGKSTLlk~l~G   67 (271)
T 2ixe_A           46 KVTALVGPNGSGKSTVAALLQN   67 (271)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            4789999999999999999876

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=97.89  E-value=1.6e-05  Score=46.51  Aligned_cols=22  Identities=14%  Similarity=0.176  Sum_probs=20.4

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ..|+|.|++|+||||+++.+..
T Consensus        27 ~~i~i~G~~GsGKsT~~~~l~~   48 (229)
T 4eaq_A           27 AFITFEGPEGSGKTTVINEVYH   48 (229)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Confidence            4789999999999999999988

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=97.89  E-value=1.1e-05  Score=46.48  Aligned_cols=31  Identities=16%  Similarity=0.214  Sum_probs=24.6

Q ss_pred             CCceeeEEcCCCCcHHHHHHHHhcCcccccCCC
Q 037564            1 FSGCKPILDSSSFDKTAFTADTYNNNHVKFYFD   33 (93)
Q Consensus         1 ~~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~   33 (93)
                      |+..|++-|.-|+||||+++.+.+  .+...++
T Consensus         1 M~kFI~~EG~dGsGKsTq~~~L~~--~L~~~~~   31 (205)
T 4hlc_A            1 MSAFITFEGPEGSGKTTVINEVYH--RLVKDYD   31 (205)
T ss_dssp             -CEEEEEECCTTSCHHHHHHHHHH--HHTTTSC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHH--HHHCCCC
Confidence            577899999999999999999888  4444443

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=97.88  E-value=8.8e-06  Score=48.63  Aligned_cols=22  Identities=9%  Similarity=0.132  Sum_probs=20.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|.|++|+|||||.+.++.
T Consensus        34 e~~~liG~nGsGKSTLl~~i~G   55 (266)
T 2yz2_A           34 ECLLVAGNTGSGKSTLLQIVAG   55 (266)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCcHHHHHHHHhC
Confidence            4789999999999999999876

>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...

Probab=97.88  E-value=0.0002  Score=46.19  Aligned_cols=52  Identities=17%  Similarity=0.175  Sum_probs=37.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCccc-ccCCCeeEEEEeCCCC-CHHHHHHHHHHh
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHV-KFYFDCHAWVRVSISY-DFRMVLDDIIKS   56 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~-~~~f~~~~wv~~~~~~-~~~~ll~~il~~   56 (93)
                      .-++|.|.+|+|||+|+..+.+  .+ +.+-+.++++-+.+.. ...++++++.+.
T Consensus       154 Qr~~Ifgg~G~GKT~L~~~i~~--~~~~~~~~v~V~~~iGER~rEv~e~~~~~~~~  207 (482)
T 2ck3_D          154 GKIGLFGGAGVGKTVLIMELIN--NVAKAHGGYSVFAGVGERTREGNDLYHEMIES  207 (482)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH--HTTTTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred             CeeeeecCCCCChHHHHHHHHH--hhHhhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence            4578999999999999998877  32 2233567777777654 456677777664

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=97.88  E-value=4.7e-06  Score=49.36  Aligned_cols=21  Identities=10%  Similarity=0.041  Sum_probs=19.2

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      -+.++|++|+|||+||+.+++
T Consensus        46 ~vll~G~~GtGKT~la~~la~   66 (268)
T 2r62_A           46 GVLLVGPPGTGKTLLAKAVAG   66 (268)
T ss_dssp             CCCCBCSSCSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            467899999999999999988

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=97.88  E-value=3.4e-05  Score=52.63  Aligned_cols=21  Identities=14%  Similarity=0.147  Sum_probs=19.3

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      -+.++|++|+|||++|+.+++
T Consensus       193 ~vlL~G~pG~GKT~la~~la~  213 (854)
T 1qvr_A          193 NPVLIGEPGVGKTAIVEGLAQ  213 (854)
T ss_dssp             CCEEEECTTSCHHHHHHHHHH
T ss_pred             ceEEEcCCCCCHHHHHHHHHH
Confidence            468999999999999999987

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=97.88  E-value=9e-06  Score=48.23  Aligned_cols=22  Identities=9%  Similarity=0.075  Sum_probs=20.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|.|++|+|||||.+.+..
T Consensus        27 e~~~liG~NGsGKSTLlk~l~G   48 (249)
T 2qi9_C           27 EILHLVGPNGAGKSTLLARMAG   48 (249)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCcHHHHHHHHhC
Confidence            4789999999999999999876

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=97.88  E-value=7.8e-06  Score=50.36  Aligned_cols=22  Identities=18%  Similarity=0.068  Sum_probs=20.3

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +.+.++|++|+|||++|+.+.+
T Consensus        71 ~~vLl~GppGtGKT~la~~la~   92 (368)
T 3uk6_A           71 RAVLIAGQPGTGKTAIAMGMAQ   92 (368)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4688999999999999999988

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=97.88  E-value=7.1e-06  Score=47.23  Aligned_cols=21  Identities=10%  Similarity=-0.086  Sum_probs=19.1

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .|.|.|++|+||||+|+.+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999876

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=97.88  E-value=3e-05  Score=44.95  Aligned_cols=22  Identities=5%  Similarity=-0.173  Sum_probs=20.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ..|.+.|+.|+||||+++.+..
T Consensus         7 ~~i~~eG~~gsGKsT~~~~l~~   28 (213)
T 4edh_A            7 LFVTLEGPEGAGKSTNRDYLAE   28 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Confidence            5789999999999999999987

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=97.88  E-value=7.8e-06  Score=47.46  Aligned_cols=21  Identities=10%  Similarity=-0.097  Sum_probs=19.2

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .|.+.|++|+||||+|+.+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999999876

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=97.88  E-value=9e-06  Score=48.97  Aligned_cols=22  Identities=9%  Similarity=-0.133  Sum_probs=20.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|.|++|+|||||.+.++.
T Consensus        48 e~~~liG~NGsGKSTLlk~l~G   69 (279)
T 2ihy_A           48 DKWILYGLNGAGKTTLLNILNA   69 (279)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCcHHHHHHHHhC
Confidence            4789999999999999999876

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=97.88  E-value=7.4e-06  Score=50.00  Aligned_cols=22  Identities=9%  Similarity=-0.023  Sum_probs=20.0

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +.+.|+|++|+|||++|+.+++
T Consensus        56 ~~vll~G~~GtGKT~la~~ia~   77 (338)
T 3pfi_A           56 DHILFSGPAGLGKTTLANIISY   77 (338)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHH
Confidence            3578999999999999999987

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.87  E-value=9.6e-06  Score=48.38  Aligned_cols=22  Identities=14%  Similarity=0.131  Sum_probs=19.9

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|+|++|+|||||.+.+..
T Consensus        26 ~~v~i~Gp~GsGKSTll~~l~g   47 (261)
T 2eyu_A           26 GLILVTGPTGSGKSTTIASMID   47 (261)
T ss_dssp             EEEEEECSTTCSHHHHHHHHHH
T ss_pred             CEEEEECCCCccHHHHHHHHHH
Confidence            5789999999999999998776

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=97.87  E-value=9.6e-06  Score=48.18  Aligned_cols=22  Identities=9%  Similarity=0.093  Sum_probs=20.3

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|.|++|+|||||.+.++.
T Consensus        32 e~~~l~G~nGsGKSTLl~~l~G   53 (253)
T 2nq2_C           32 DILAVLGQNGCGKSTLLDLLLG   53 (253)
T ss_dssp             CEEEEECCSSSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            4789999999999999999887

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=97.86  E-value=8.5e-06  Score=47.06  Aligned_cols=22  Identities=5%  Similarity=-0.145  Sum_probs=19.6

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ..|.+.|++|+||||+|+.+..
T Consensus         6 ~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            6 HNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3688999999999999999876

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=97.86  E-value=9.7e-06  Score=50.48  Aligned_cols=22  Identities=14%  Similarity=-0.028  Sum_probs=20.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++++|++|+||||+++.++.
T Consensus       158 ~vi~lvG~nGsGKTTll~~Lag  179 (359)
T 2og2_A          158 AVIMIVGVNGGGKTTSLGKLAH  179 (359)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEEcCCCChHHHHHHHHHh
Confidence            5899999999999999998876

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=97.86  E-value=7.3e-06  Score=47.79  Aligned_cols=22  Identities=14%  Similarity=-0.080  Sum_probs=20.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+|+|.|+.|+||||+++.+..
T Consensus        21 ~~i~i~G~~GsGKSTl~~~L~~   42 (230)
T 2vp4_A           21 FTVLIEGNIGSGKTTYLNHFEK   42 (230)
T ss_dssp             EEEEEECSTTSCHHHHHHTTGG
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            4799999999999999998877

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=97.86  E-value=9.8e-06  Score=51.22  Aligned_cols=22  Identities=9%  Similarity=0.067  Sum_probs=20.4

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+|.++|++|+||||+|+.+..
T Consensus       259 ~lIil~G~pGSGKSTla~~L~~  280 (416)
T 3zvl_A          259 EVVVAVGFPGAGKSTFIQEHLV  280 (416)
T ss_dssp             CEEEEESCTTSSHHHHHHHHTG
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999999877

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=97.85  E-value=1.1e-05  Score=47.56  Aligned_cols=22  Identities=5%  Similarity=-0.044  Sum_probs=20.0

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+|+|.|++|+||||+++.+..
T Consensus        10 ~~i~i~G~~GsGKsTla~~la~   31 (233)
T 3r20_A           10 LVVAVDGPAGTGKSSVSRGLAR   31 (233)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999999876

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=97.85  E-value=1.1e-05  Score=49.21  Aligned_cols=22  Identities=9%  Similarity=0.282  Sum_probs=20.0

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|+|++|+|||||++.+..
T Consensus       127 e~vaIvGpsGsGKSTLl~lL~g  148 (305)
T 2v9p_A          127 NCLAFIGPPNTGKSMLCNSLIH  148 (305)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHhh
Confidence            5789999999999999998875

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=97.84  E-value=7.5e-06  Score=52.26  Aligned_cols=21  Identities=10%  Similarity=0.017  Sum_probs=19.5

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+.++|++|+||||+|+.+++
T Consensus        52 ~vLL~GppGtGKTtlAr~ia~   72 (447)
T 3pvs_A           52 SMILWGPPGTGKTTLAEVIAR   72 (447)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            478999999999999999988

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=97.84  E-value=1.2e-05  Score=46.88  Aligned_cols=22  Identities=9%  Similarity=-0.043  Sum_probs=19.9

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ..|.+.|++|+||||+|+.+..
T Consensus        17 ~~I~l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           17 VRAVLLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4688999999999999999877

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=97.84  E-value=1.2e-05  Score=48.04  Aligned_cols=23  Identities=4%  Similarity=0.076  Sum_probs=20.5

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ..++.|.|++|+|||||+..++.
T Consensus        30 G~i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           30 GTVGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHH
Confidence            35889999999999999998876

>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*

Probab=97.83  E-value=2.1e-05  Score=50.43  Aligned_cols=51  Identities=12%  Similarity=0.237  Sum_probs=34.7

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCCC----eeEEEEeCCC-CCHHHHHHHHHH
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFD----CHAWVRVSIS-YDFRMVLDDIIK   55 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~----~~~wv~~~~~-~~~~~ll~~il~   55 (93)
                      .-++|.|.+|+|||+|+..+.++...  +-+    .++++-+.+. ....++++.+.+
T Consensus       152 Qr~~Ifgg~G~GKt~L~~~Ia~~~~~--~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~  207 (465)
T 3vr4_D          152 QKLPVFSGSGLPHKELAAQIARQATV--LDSSDDFAVVFAAIGITFEEAEFFMEDFRQ  207 (465)
T ss_dssp             CBCCEEECTTSCHHHHHHHHHHHCBC--SSCSSCEEEEEEEEEECHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCcChHHHHHHHHHHHHh--ccCCCceEEEEEEecCCcHHHHHHHHHHhh
Confidence            34689999999999999998884332  222    5566666654 455666676654

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=97.83  E-value=1e-05  Score=48.53  Aligned_cols=22  Identities=9%  Similarity=0.068  Sum_probs=19.8

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .-+.++|++|+|||++|+.+.+
T Consensus        51 ~~vll~G~~GtGKT~la~~la~   72 (310)
T 1ofh_A           51 KNILMIGPTGVGKTEIARRLAK   72 (310)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            3578999999999999999987

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=97.83  E-value=1.1e-05  Score=49.32  Aligned_cols=23  Identities=13%  Similarity=0.150  Sum_probs=20.8

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ..+|.|.|+.|+||||||..++.
T Consensus        10 ~~~i~i~GptgsGKt~la~~La~   32 (316)
T 3foz_A           10 PKAIFLMGPTASGKTALAIELRK   32 (316)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEECCCccCHHHHHHHHHH
Confidence            35789999999999999999887

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=97.83  E-value=3.8e-06  Score=50.79  Aligned_cols=22  Identities=9%  Similarity=-0.037  Sum_probs=17.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+|+|.|++|+||||+|+.+..
T Consensus         6 ~iIgItG~sGSGKSTva~~L~~   27 (290)
T 1a7j_A            6 PIISVTGSSGAGTSTVKHTFDQ   27 (290)
T ss_dssp             CEEEEESCC---CCTHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998876

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=97.83  E-value=4.8e-05  Score=55.24  Aligned_cols=84  Identities=13%  Similarity=0.003  Sum_probs=56.4

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHHHHhhCCCCCCccccC-CCHHHHHHHHHH
Q 037564            2 SGCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIG-EDYQLKKSILRD   80 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~il~~l~~~~~~~~~~~-~~~~~l~~~l~~   80 (93)
                      .++|-|.|+.|+||||||-++..  +....=..++|+...+..++.-     ++.++.....-.-.. .+.++.+..+..
T Consensus      1431 g~~iei~g~~~sGkttl~~~~~a--~~~~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~~~ 1503 (1706)
T 3cmw_A         1431 GRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDA 1503 (1706)
T ss_dssp             TSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHH--HHHhcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHHHH
Confidence            37899999999999999999887  4444556788888877777653     566664432211112 555666666666


Q ss_pred             hcCCC-eEEEEee
Q 037564           81 YLTNK-KYFIVLD   92 (93)
Q Consensus        81 ~L~~k-r~LlVlD   92 (93)
                      .++.. --++|+|
T Consensus      1504 ~~~s~~~~~vvvD 1516 (1706)
T 3cmw_A         1504 LARSGAVDVIVVD 1516 (1706)
T ss_dssp             HHHHTCCSEEEES
T ss_pred             HHHcCCCCEEEEc
Confidence            66443 3477777

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=97.81  E-value=1.1e-05  Score=49.99  Aligned_cols=22  Identities=9%  Similarity=0.054  Sum_probs=19.9

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +-+.++|++|+|||++|+.+++
T Consensus        52 ~~vll~GppGtGKT~la~~ia~   73 (363)
T 3hws_A           52 SNILLIGPTGSGKTLLAETLAR   73 (363)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4578999999999999999987

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=97.81  E-value=1.3e-05  Score=49.59  Aligned_cols=22  Identities=9%  Similarity=0.120  Sum_probs=20.6

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+|.|.|+.|+|||||+..++.
T Consensus        41 ~lIvI~GPTgsGKTtLa~~LA~   62 (339)
T 3a8t_A           41 KLLVLMGATGTGKSRLSIDLAA   62 (339)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHT
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999988

>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B

Probab=97.81  E-value=0.00018  Score=46.66  Aligned_cols=87  Identities=17%  Similarity=0.184  Sum_probs=48.7

Q ss_pred             ceeeEEcCCCCcHHHHH-HHHhcCcccccCCC-eeEEEEeCCCC-CHHHHHHHHHHhhCCCCCCcc-cc-CCCHHHH---
Q 037564            3 GCKPILDSSSFDKTAFT-ADTYNNNHVKFYFD-CHAWVRVSISY-DFRMVLDDIIKSVMPPSRVSV-II-GEDYQLK---   74 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa-~~~~~~~~~~~~f~-~~~wv~~~~~~-~~~~ll~~il~~l~~~~~~~~-~~-~~~~~~l---   74 (93)
                      .-++|.|.+|+|||+|| ..+.+  ..  +-+ .++++-+.+.. ...++.+.+.+.-......-. .. +.+....   
T Consensus       163 QR~~Ifg~~g~GKT~Lal~~I~~--~~--~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~a  238 (502)
T 2qe7_A          163 QRELIIGDRQTGKTTIAIDTIIN--QK--GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYLA  238 (502)
T ss_dssp             CBCEEEECSSSCHHHHHHHHHHG--GG--SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHHHH
T ss_pred             CEEEEECCCCCCchHHHHHHHHH--hh--cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHHHH
Confidence            45789999999999995 46666  22  234 35677777654 446666666653221111000 00 0111111   


Q ss_pred             ---HHHHHHhc--CCCeEEEEeeC
Q 037564           75 ---KSILRDYL--TNKKYFIVLDD   93 (93)
Q Consensus        75 ---~~~l~~~L--~~kr~LlVlDD   93 (93)
                         .-.+-+++  +++.+|+++||
T Consensus       239 ~~~a~tiAEyfrd~G~dVLl~~Ds  262 (502)
T 2qe7_A          239 PYAGCAMGEYFMYKGKHALVVYDD  262 (502)
T ss_dssp             HHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred             HHHHHHHHHHHHHcCCcEEEEEec
Confidence               12344444  57899999997

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=97.81  E-value=1.4e-05  Score=47.74  Aligned_cols=22  Identities=18%  Similarity=0.051  Sum_probs=20.1

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|.|++|+|||||.+.++.
T Consensus        31 e~~~i~G~NGsGKSTLlk~l~G   52 (263)
T 2pjz_A           31 EKVIILGPNGSGKTTLLRAISG   52 (263)
T ss_dssp             SEEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHhC
Confidence            4789999999999999999876

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=97.81  E-value=1.3e-05  Score=46.35  Aligned_cols=21  Identities=10%  Similarity=-0.054  Sum_probs=19.2

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +|.+.|++|+||+|.|+.+..
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~   22 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAK   22 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            578899999999999999887

>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*

Probab=97.80  E-value=4.1e-05  Score=49.60  Aligned_cols=49  Identities=14%  Similarity=0.146  Sum_probs=32.0

Q ss_pred             ceeeEEcCCCCcHHHHH-HHHhcCcccccCCC-eeEEEEeCCCC-CHHHHHHHHHH
Q 037564            3 GCKPILDSSSFDKTAFT-ADTYNNNHVKFYFD-CHAWVRVSISY-DFRMVLDDIIK   55 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa-~~~~~~~~~~~~f~-~~~wv~~~~~~-~~~~ll~~il~   55 (93)
                      .-++|.|.+|+|||+|| ..+.+.  ..  -+ .++++-+.+.. ...++.+.+.+
T Consensus       164 QR~~Ifg~~g~GKT~Lal~~I~~~--~~--~dv~~V~~~iGeR~~Ev~~~~~~~~~  215 (507)
T 1fx0_A          164 QRELIIGDRQTGKTAVATDTILNQ--QG--QNVICVYVAIGQKASSVAQVVTNFQE  215 (507)
T ss_dssp             CBCBEEESSSSSHHHHHHHHHHTC--CT--TTCEEEEEEESCCHHHHHHHHHHTGG
T ss_pred             CEEEEecCCCCCccHHHHHHHHHh--hc--CCcEEEEEEcCCCchHHHHHHHHHHh
Confidence            35789999999999995 567663  22  33 35677777654 34455555543

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=97.79  E-value=1.3e-05  Score=49.75  Aligned_cols=22  Identities=9%  Similarity=0.052  Sum_probs=19.9

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ..+.++|++|+|||++|+.+++
T Consensus        73 ~~ill~Gp~GtGKT~la~~la~   94 (376)
T 1um8_A           73 SNILLIGPTGSGKTLMAQTLAK   94 (376)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCEEEECCCCCCHHHHHHHHHH
Confidence            3578999999999999999988

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=97.79  E-value=1.5e-05  Score=44.68  Aligned_cols=22  Identities=14%  Similarity=0.096  Sum_probs=19.7

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|+|+|.+|+|||||.+.+...
T Consensus         4 kv~ivG~~gvGKStLl~~l~~~   25 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMKT   25 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999998873

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=97.79  E-value=9.8e-05  Score=47.93  Aligned_cols=22  Identities=9%  Similarity=-0.017  Sum_probs=20.3

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|.|++|+|||||++.++.
T Consensus       282 ~i~~i~G~~GsGKSTLl~~l~g  303 (525)
T 1tf7_A          282 SIILATGATGTGKTLLVSRFVE  303 (525)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHH
Confidence            4789999999999999999886

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=97.78  E-value=1.6e-05  Score=49.77  Aligned_cols=22  Identities=14%  Similarity=-0.017  Sum_probs=20.4

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|+|++|+|||||++.+..
T Consensus       170 ~~i~l~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          170 RYWLFKGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            5899999999999999999886

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=97.78  E-value=1.6e-05  Score=48.16  Aligned_cols=22  Identities=14%  Similarity=0.048  Sum_probs=20.4

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|.|++|+|||||.+.+..
T Consensus        65 e~~~i~G~NGsGKSTLlk~l~G   86 (290)
T 2bbs_A           65 QLLAVAGSTGAGKTSLLMMIMG   86 (290)
T ss_dssp             CEEEEEESTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCcHHHHHHHHhc
Confidence            5789999999999999999887

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=97.78  E-value=1.9e-05  Score=44.21  Aligned_cols=21  Identities=14%  Similarity=0.238  Sum_probs=18.9

Q ss_pred             ceeeEEcCCCCcHHHHHHHHh
Q 037564            3 GCKPILDSSSFDKTAFTADTY   23 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~   23 (93)
                      ++.+|+|+.|+|||||+..++
T Consensus        27 g~~~i~G~NGsGKStll~ai~   47 (182)
T 3kta_A           27 GFTAIVGANGSGKSNIGDAIL   47 (182)
T ss_dssp             SEEEEEECTTSSHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHH
Confidence            578999999999999999875

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=97.78  E-value=1.5e-05  Score=51.53  Aligned_cols=22  Identities=9%  Similarity=-0.049  Sum_probs=20.3

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|+|.+|+|||||++.+..
T Consensus       294 eVI~LVGpNGSGKTTLl~~LAg  315 (503)
T 2yhs_A          294 FVILMVGVNGVGKTTTIGKLAR  315 (503)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCcccHHHHHHHHHH
Confidence            5899999999999999999876

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=97.77  E-value=1.7e-05  Score=44.78  Aligned_cols=22  Identities=14%  Similarity=0.132  Sum_probs=19.7

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .++|.|.+|+|||||.+.+...
T Consensus        31 kv~lvG~~g~GKSTLl~~l~~~   52 (191)
T 1oix_A           31 KVVLIGDSGVGKSNLLSRFTRN   52 (191)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            5789999999999999998864

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=97.77  E-value=1.5e-05  Score=48.89  Aligned_cols=23  Identities=13%  Similarity=0.065  Sum_probs=20.8

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ..+|.|.|+.|+||||||..++.
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~   25 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAK   25 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEECCCcCCHHHHHHHHHH
Confidence            35789999999999999999987

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=97.77  E-value=1.6e-05  Score=45.85  Aligned_cols=23  Identities=13%  Similarity=0.068  Sum_probs=20.4

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      ..|.|+|.+|+|||||+.++...
T Consensus        39 ~~i~ivG~~gvGKTtl~~~l~~~   61 (226)
T 2hf9_A           39 VAFDFMGAIGSGKTLLIEKLIDN   61 (226)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Confidence            57889999999999999998873

>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}

Probab=97.77  E-value=4.1e-05  Score=49.62  Aligned_cols=49  Identities=14%  Similarity=0.143  Sum_probs=33.2

Q ss_pred             ceeeEEcCCCCcHHHHH-HHHhcCcccccCCC-eeEEEEeCCCC-CHHHHHHHHHH
Q 037564            3 GCKPILDSSSFDKTAFT-ADTYNNNHVKFYFD-CHAWVRVSISY-DFRMVLDDIIK   55 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa-~~~~~~~~~~~~f~-~~~wv~~~~~~-~~~~ll~~il~   55 (93)
                      .-++|.|.+|+|||+|| ..+.+.  .  .-+ .++++-+.+.. ...++.+.+.+
T Consensus       176 QR~~I~g~~g~GKT~Lal~~I~~~--~--~~dv~~V~~~IGeR~~Ev~e~~~~~~~  227 (515)
T 2r9v_A          176 QRELIIGDRQTGKTAIAIDTIINQ--K--GQGVYCIYVAIGQKKSAIARIIDKLRQ  227 (515)
T ss_dssp             CBEEEEEETTSSHHHHHHHHHHTT--T--TTTEEEEEEEESCCHHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCccHHHHHHHHHh--h--cCCcEEEEEEcCCCcHHHHHHHHHHHh
Confidence            45789999999999995 466663  2  234 35677777654 44566666665

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=97.77  E-value=1.5e-05  Score=47.78  Aligned_cols=22  Identities=9%  Similarity=0.153  Sum_probs=19.7

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      =.++|+|++|+|||||.+.++.
T Consensus         3 f~v~lvG~nGaGKSTLln~L~g   24 (270)
T 3sop_A            3 FNIMVVGQSGLGKSTLVNTLFK   24 (270)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhC
Confidence            4689999999999999998875

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=97.76  E-value=1.2e-05  Score=49.00  Aligned_cols=22  Identities=9%  Similarity=0.104  Sum_probs=20.3

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|+|++|+|||||++.+..
T Consensus        81 e~vaivG~sGsGKSTLl~ll~g  102 (306)
T 3nh6_A           81 QTLALVGPSGAGKSTILRLLFR  102 (306)
T ss_dssp             CEEEEESSSCHHHHHHHHHHTT
T ss_pred             CEEEEECCCCchHHHHHHHHHc
Confidence            4789999999999999999876

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=97.76  E-value=1.8e-05  Score=49.25  Aligned_cols=22  Identities=18%  Similarity=0.036  Sum_probs=20.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|.|++|+|||||.+.+..
T Consensus        31 e~~~llGpsGsGKSTLLr~iaG   52 (359)
T 3fvq_A           31 EILFIIGASGCGKTTLLRCLAG   52 (359)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCchHHHHHHHHhc
Confidence            4789999999999999999876

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=97.75  E-value=1.7e-05  Score=49.18  Aligned_cols=23  Identities=17%  Similarity=0.140  Sum_probs=20.1

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ...++|+|++|+|||||++.+..
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~g  192 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAA  192 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHH
T ss_pred             hCeEEEECCCCCCHHHHHHHHHH
Confidence            35789999999999999998765

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=97.75  E-value=2e-05  Score=43.38  Aligned_cols=23  Identities=4%  Similarity=0.016  Sum_probs=20.4

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      ..|++.|.+|+|||||.+.+...
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~~   26 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTGE   26 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            36899999999999999999874

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=97.75  E-value=1.7e-05  Score=46.44  Aligned_cols=23  Identities=13%  Similarity=0.042  Sum_probs=20.9

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +..|+|.|..|+||||+++.+..
T Consensus         2 ~~~i~~~G~~g~GKtt~~~~l~~   24 (241)
T 2ocp_A            2 PRRLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Confidence            46799999999999999999887

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=97.75  E-value=2.2e-05  Score=45.86  Aligned_cols=22  Identities=14%  Similarity=-0.115  Sum_probs=19.9

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+|+|.|++|+||||+++.+..
T Consensus        17 ~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           17 IQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             CEEEEECSSCSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998875

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=97.75  E-value=1.9e-05  Score=44.75  Aligned_cols=22  Identities=14%  Similarity=0.132  Sum_probs=19.7

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .|+|.|.+|+|||||.+.+...
T Consensus         7 kv~lvG~~g~GKSTLl~~l~~~   28 (199)
T 2f9l_A            7 KVVLIGDSGVGKSNLLSRFTRN   28 (199)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            5789999999999999998874

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=97.75  E-value=3.3e-05  Score=45.29  Aligned_cols=22  Identities=9%  Similarity=-0.144  Sum_probs=17.3

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ..|.+.|+.|+||||+++.+..
T Consensus        26 ~~I~~eG~~GsGKsT~~~~l~~   47 (227)
T 3v9p_A           26 KFITFEGIDGAGKTTHLQWFCD   47 (227)
T ss_dssp             CEEEEECCC---CHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999999988

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=97.74  E-value=2e-05  Score=48.50  Aligned_cols=22  Identities=9%  Similarity=-0.047  Sum_probs=19.8

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ..+.++|++|+||||+|+.+.+
T Consensus        39 ~~~ll~G~~G~GKT~la~~la~   60 (373)
T 1jr3_A           39 HAYLFSGTRGVGKTSIARLLAK   60 (373)
T ss_dssp             SEEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4578999999999999999887

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=97.74  E-value=2.1e-05  Score=48.89  Aligned_cols=22  Identities=18%  Similarity=0.021  Sum_probs=20.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|.|++|+|||||.+.++.
T Consensus        42 e~~~llGpnGsGKSTLLr~iaG   63 (355)
T 1z47_A           42 EMVGLLGPSGSGKTTILRLIAG   63 (355)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCCcHHHHHHHHhC
Confidence            4789999999999999999876

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=97.74  E-value=6.3e-05  Score=44.34  Aligned_cols=22  Identities=9%  Similarity=-0.135  Sum_probs=20.4

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ..|.+.|+.|+||||+++.+..
T Consensus        28 ~~i~~eG~~GsGKsT~~~~l~~   49 (236)
T 3lv8_A           28 KFIVIEGLEGAGKSTAIQVVVE   49 (236)
T ss_dssp             CEEEEEESTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999999987

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=97.74  E-value=2.2e-05  Score=49.06  Aligned_cols=22  Identities=9%  Similarity=0.006  Sum_probs=20.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|.|++|+|||||.+.+..
T Consensus        55 ei~~IiGpnGaGKSTLlr~i~G   76 (366)
T 3tui_C           55 QIYGVIGASGAGKSTLIRCVNL   76 (366)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHT
T ss_pred             CEEEEEcCCCchHHHHHHHHhc
Confidence            4789999999999999999876

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.73  E-value=1.7e-05  Score=48.46  Aligned_cols=20  Identities=10%  Similarity=-0.054  Sum_probs=18.9

Q ss_pred             eeEEcCCCCcHHHHHHHHhc
Q 037564            5 KPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +.++|++|+||||+|+.+.+
T Consensus        61 ~ll~G~~G~GKT~la~~la~   80 (353)
T 1sxj_D           61 MLFYGPPGTGKTSTILALTK   80 (353)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999988

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=97.73  E-value=7.5e-05  Score=43.32  Aligned_cols=52  Identities=12%  Similarity=-0.035  Sum_probs=32.0

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhcCccccc-CCCeeEEEEeCCCCCHHHHHHHHHH
Q 037564            2 SGCKPILDSSSFDKTAFTADTYNNNHVKF-YFDCHAWVRVSISYDFRMVLDDIIK   55 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~-~f~~~~wv~~~~~~~~~~ll~~il~   55 (93)
                      +..|.+.|+.|+||||+++.+..  .+.. .+....+..-+......+.+++++.
T Consensus         3 g~~i~~eG~~gsGKsT~~~~l~~--~l~~~~~~~v~~~rep~~t~~g~~ir~~l~   55 (213)
T 4tmk_A            3 SKYIVIEGLEGAGKTTARNVVVE--TLEQLGIRDMVFTREPGGTQLAEKLRSLLL   55 (213)
T ss_dssp             CCEEEEEECTTSCHHHHHHHHHH--HHHHTTCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH--HHHHcCCCcceeeeCCCCCHHHHHHHHHHh
Confidence            35789999999999999999987  4433 2322333222222233455555554

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=97.72  E-value=2.4e-05  Score=48.77  Aligned_cols=22  Identities=18%  Similarity=0.028  Sum_probs=20.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|.|++|+|||||.+.+..
T Consensus        30 e~~~llGpnGsGKSTLLr~iaG   51 (359)
T 2yyz_A           30 EFVALLGPSGCGKTTTLLMLAG   51 (359)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHT
T ss_pred             CEEEEEcCCCchHHHHHHHHHC
Confidence            4789999999999999999886

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=97.72  E-value=2.3e-05  Score=48.84  Aligned_cols=22  Identities=14%  Similarity=0.092  Sum_probs=20.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|.|++|+|||||.+.++.
T Consensus        30 e~~~llGpnGsGKSTLLr~iaG   51 (362)
T 2it1_A           30 EFMALLGPSGSGKSTLLYTIAG   51 (362)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCchHHHHHHHHhc
Confidence            4789999999999999999876

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=97.72  E-value=2e-05  Score=45.22  Aligned_cols=22  Identities=18%  Similarity=0.105  Sum_probs=20.1

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ++|.++|.+|+|||||+..+..
T Consensus        31 ~~i~i~G~~g~GKTTl~~~l~~   52 (221)
T 2wsm_A           31 VAVNIMGAIGSGKTLLIERTIE   52 (221)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Confidence            5789999999999999999887

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=97.72  E-value=2.4e-05  Score=48.92  Aligned_cols=22  Identities=18%  Similarity=0.009  Sum_probs=20.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|.|++|+|||||.+.++.
T Consensus        30 e~~~llGpnGsGKSTLLr~iaG   51 (372)
T 1g29_1           30 EFMILLGPSGCGKTTTLRMIAG   51 (372)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCcHHHHHHHHHHc
Confidence            4789999999999999999876

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=97.71  E-value=2.5e-05  Score=45.09  Aligned_cols=23  Identities=13%  Similarity=-0.012  Sum_probs=20.6

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+.|.|.|++|+||||||..+..
T Consensus        34 g~~ilI~GpsGsGKStLA~~La~   56 (205)
T 2qmh_A           34 GLGVLITGDSGVGKSETALELVQ   56 (205)
T ss_dssp             TEEEEEECCCTTTTHHHHHHHHT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            35688999999999999999987

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.71  E-value=1.7e-05  Score=48.59  Aligned_cols=20  Identities=5%  Similarity=-0.049  Sum_probs=18.4

Q ss_pred             eeEEcCCCCcHHHHHHHHhc
Q 037564            5 KPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +.++|++|+||||+++.++.
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~   58 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLE   58 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999998776

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=97.70  E-value=2.6e-05  Score=48.95  Aligned_cols=22  Identities=9%  Similarity=0.004  Sum_probs=20.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|.|++|+|||||.+.+..
T Consensus        30 e~~~llGpsGsGKSTLLr~iaG   51 (381)
T 3rlf_A           30 EFVVFVGPSGCGKSTLLRMIAG   51 (381)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHT
T ss_pred             CEEEEEcCCCchHHHHHHHHHc
Confidence            4789999999999999999886

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=97.70  E-value=2.6e-05  Score=48.80  Aligned_cols=22  Identities=18%  Similarity=0.010  Sum_probs=20.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|.|++|+|||||.+.++.
T Consensus        38 e~~~llGpnGsGKSTLLr~iaG   59 (372)
T 1v43_A           38 EFLVLLGPSGCGKTTTLRMIAG   59 (372)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCChHHHHHHHHHc
Confidence            4789999999999999999876

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=97.69  E-value=2.8e-05  Score=45.81  Aligned_cols=22  Identities=14%  Similarity=0.051  Sum_probs=19.4

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .++.+.|.+|+||||++..+..
T Consensus        15 ~i~~~~GkgGvGKTTl~~~La~   36 (262)
T 1yrb_A           15 MIVVFVGTAGSGKTTLTGEFGR   36 (262)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCCCHHHHHHHHHH
Confidence            4678889999999999999974

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=97.69  E-value=2.1e-05  Score=47.47  Aligned_cols=21  Identities=10%  Similarity=-0.069  Sum_probs=19.3

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      -+.++|++|+|||++|+.+++
T Consensus        48 ~~ll~G~~G~GKT~la~~l~~   68 (327)
T 1iqp_A           48 HLLFAGPPGVGKTTAALALAR   68 (327)
T ss_dssp             EEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECcCCCCHHHHHHHHHH
Confidence            378999999999999999988

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=97.69  E-value=2.8e-05  Score=43.37  Aligned_cols=22  Identities=5%  Similarity=0.077  Sum_probs=20.0

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .|++.|.+|+|||||...+...
T Consensus         9 ~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            9 EIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5889999999999999999874

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=97.69  E-value=0.00063  Score=44.23  Aligned_cols=22  Identities=9%  Similarity=-0.075  Sum_probs=20.1

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ++|.|+|.+|+||||++.++..
T Consensus       102 ~vI~ivG~~GvGKTTl~~kLA~  123 (504)
T 2j37_W          102 NVIMFVGLQGSGKTTTCSKLAY  123 (504)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999999885

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=97.68  E-value=0.00011  Score=50.17  Aligned_cols=22  Identities=14%  Similarity=0.031  Sum_probs=19.8

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +=+.++|++|+|||.+|+.+++
T Consensus       512 ~gvLl~GPPGtGKT~lAkaiA~  533 (806)
T 3cf2_A          512 KGVLFYGPPGCGKTLLAKAIAN  533 (806)
T ss_dssp             SCCEEESSTTSSHHHHHHHHHH
T ss_pred             ceEEEecCCCCCchHHHHHHHH
Confidence            3467899999999999999999

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=97.68  E-value=5.3e-05  Score=44.29  Aligned_cols=22  Identities=9%  Similarity=-0.206  Sum_probs=20.3

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ..|.+.|+.|+||||+++.+..
T Consensus        22 ~~i~~~G~~g~GKst~~~~l~~   43 (223)
T 3ld9_A           22 MFITFEGIDGSGKTTQSHLLAE   43 (223)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999999988

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=97.68  E-value=1.8e-05  Score=45.92  Aligned_cols=21  Identities=14%  Similarity=0.224  Sum_probs=18.8

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+.++|++|+||||+|..+++
T Consensus        60 ~ili~GPPGtGKTt~a~ala~   80 (212)
T 1tue_A           60 CLVFCGPANTGKSYFGMSFIH   80 (212)
T ss_dssp             EEEEESCGGGCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999888776

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.67  E-value=2.3e-05  Score=48.07  Aligned_cols=20  Identities=10%  Similarity=-0.057  Sum_probs=18.8

Q ss_pred             eeEEcCCCCcHHHHHHHHhc
Q 037564            5 KPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +.++|++|+||||+|+.++.
T Consensus        49 ~ll~Gp~G~GKTtla~~la~   68 (340)
T 1sxj_C           49 LLFYGPPGTGKTSTIVALAR   68 (340)
T ss_dssp             EEEECSSSSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999887

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=97.67  E-value=2.1e-05  Score=48.81  Aligned_cols=22  Identities=23%  Similarity=0.087  Sum_probs=20.3

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|.|++|+|||||.+.++.
T Consensus        27 e~~~llGpnGsGKSTLLr~iaG   48 (348)
T 3d31_A           27 EYFVILGPTGAGKTLFLELIAG   48 (348)
T ss_dssp             CEEEEECCCTHHHHHHHHHHHT
T ss_pred             CEEEEECCCCccHHHHHHHHHc
Confidence            4789999999999999999886

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=97.67  E-value=2.9e-05  Score=48.25  Aligned_cols=23  Identities=9%  Similarity=0.055  Sum_probs=20.6

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      ..++|+|++|+|||||++.+...
T Consensus       176 ~~i~ivG~sGsGKSTll~~l~~~  198 (361)
T 2gza_A          176 RVIVVAGETGSGKTTLMKALMQE  198 (361)
T ss_dssp             CCEEEEESSSSCHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHhc
Confidence            47899999999999999998873

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=97.65  E-value=1.8e-05  Score=46.89  Aligned_cols=22  Identities=14%  Similarity=-0.009  Sum_probs=20.1

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ..|+|.|..|+||||+++.+..
T Consensus        25 ~~I~ieG~~GsGKST~~~~L~~   46 (263)
T 1p5z_B           25 KKISIEGNIAAGKSTFVNILKQ   46 (263)
T ss_dssp             EEEEEECSTTSSHHHHHTTTGG
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999998877

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=97.65  E-value=3.1e-05  Score=44.50  Aligned_cols=22  Identities=5%  Similarity=-0.056  Sum_probs=19.9

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+|+|.|+.|+||||+++.+..
T Consensus         4 ~~i~i~G~~gsGkst~~~~l~~   25 (219)
T 2h92_A            4 INIALDGPAAAGKSTIAKRVAS   25 (219)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998766

>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*

Probab=97.65  E-value=3.1e-05  Score=49.61  Aligned_cols=53  Identities=11%  Similarity=0.189  Sum_probs=34.4

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccc--------cCCC-eeEEEEeCCC-CCHHHHHHHHHH
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVK--------FYFD-CHAWVRVSIS-YDFRMVLDDIIK   55 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~--------~~f~-~~~wv~~~~~-~~~~~ll~~il~   55 (93)
                      .-++|.|.+|+|||+|+..+.+.....        ++=+ .++++-+.+. ....++.+.+.+
T Consensus       148 Qr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~  210 (464)
T 3gqb_B          148 QKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFER  210 (464)
T ss_dssp             CBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHH
T ss_pred             CEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhh
Confidence            356899999999999999988743331        1111 4566666654 345666666554

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=97.64  E-value=3.6e-05  Score=42.28  Aligned_cols=22  Identities=14%  Similarity=0.093  Sum_probs=19.7

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.+.|.+|+|||||...+...
T Consensus         6 ki~i~G~~~vGKSsl~~~l~~~   27 (175)
T 2nzj_A            6 RVVLLGDPGVGKTSLASLFAGK   27 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCccHHHHHHHHhcC
Confidence            4789999999999999998874

>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}

Probab=97.64  E-value=4e-06  Score=52.91  Aligned_cols=22  Identities=18%  Similarity=0.105  Sum_probs=19.6

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .-++|.|.+|+|||+|+..+.+
T Consensus       176 QR~lIfg~~g~GKT~Ll~~Ia~  197 (427)
T 3l0o_A          176 QRGMIVAPPKAGKTTILKEIAN  197 (427)
T ss_dssp             CEEEEEECTTCCHHHHHHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHH
Confidence            4578999999999999998887

>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...

Probab=97.64  E-value=7.8e-05  Score=48.36  Aligned_cols=53  Identities=9%  Similarity=0.095  Sum_probs=33.8

Q ss_pred             ceeeEEcCCCCcHHHHH-HHHhcCccc----ccCCC-eeEEEEeCCCC-CHHHHHHHHHH
Q 037564            3 GCKPILDSSSFDKTAFT-ADTYNNNHV----KFYFD-CHAWVRVSISY-DFRMVLDDIIK   55 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa-~~~~~~~~~----~~~f~-~~~wv~~~~~~-~~~~ll~~il~   55 (93)
                      .-++|.|.+|+|||+|| ..+.+....    .++-+ .++++-+.+.. ...++.+.+.+
T Consensus       163 QR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~  222 (510)
T 2ck3_A          163 QRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTD  222 (510)
T ss_dssp             CBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHH
T ss_pred             CEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHh
Confidence            35789999999999994 456663221    01233 46777777654 44566666665

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=97.64  E-value=4.6e-05  Score=46.28  Aligned_cols=22  Identities=14%  Similarity=-0.041  Sum_probs=19.8

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .-|.|+|.+|+|||++|+.+++
T Consensus        26 ~~vLi~Ge~GtGKt~lAr~i~~   47 (304)
T 1ojl_A           26 ATVLIHGDSGTGKELVARALHA   47 (304)
T ss_dssp             SCEEEESCTTSCHHHHHHHHHH
T ss_pred             CcEEEECCCCchHHHHHHHHHH
Confidence            3578999999999999999987

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=97.64  E-value=2.4e-05  Score=47.79  Aligned_cols=23  Identities=13%  Similarity=0.062  Sum_probs=20.5

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .++.|.|+.|+|||||.+.+...
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~~   27 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHS
T ss_pred             cEEEEEecCCCCHHHHHHHHHhh
Confidence            47899999999999999999863

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=97.63  E-value=3.6e-05  Score=47.37  Aligned_cols=22  Identities=9%  Similarity=0.080  Sum_probs=20.3

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ..++|+|++|+|||||++.+..
T Consensus       172 ~~v~i~G~~GsGKTTll~~l~g  193 (330)
T 2pt7_A          172 KNVIVCGGTGSGKTTYIKSIME  193 (330)
T ss_dssp             CCEEEEESTTSCHHHHHHHGGG
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            4789999999999999999887

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=97.63  E-value=1.8e-05  Score=49.15  Aligned_cols=22  Identities=27%  Similarity=0.107  Sum_probs=20.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|.|++|+|||||.+.++.
T Consensus        32 e~~~llGpnGsGKSTLLr~iaG   53 (353)
T 1oxx_K           32 ERFGILGPSGAGKTTFMRIIAG   53 (353)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCcHHHHHHHHhC
Confidence            4789999999999999999876

>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A

Probab=97.63  E-value=0.00044  Score=44.89  Aligned_cols=50  Identities=14%  Similarity=0.092  Sum_probs=33.4

Q ss_pred             ceeeEEcCCCCcHHHHH-HHHhcCcccccCCC-eeEEEEeCCCC-CHHHHHHHHHHh
Q 037564            3 GCKPILDSSSFDKTAFT-ADTYNNNHVKFYFD-CHAWVRVSISY-DFRMVLDDIIKS   56 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa-~~~~~~~~~~~~f~-~~~wv~~~~~~-~~~~ll~~il~~   56 (93)
                      .-++|.|.+|+|||+|+ ..+.+.  .  +-+ .++|+-+.+.. ...++.+.+.+.
T Consensus       163 QR~~Ifg~~g~GKT~l~l~~I~n~--~--~~dv~~V~~~IGeR~~ev~e~~~~l~~~  215 (513)
T 3oaa_A          163 QRELIIGDRQTGKTALAIDAIINQ--R--DSGIKCIYVAIGQKASTISNVVRKLEEH  215 (513)
T ss_dssp             CBCEEEESSSSSHHHHHHHHHHTT--S--SSSCEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred             CEEEeecCCCCCcchHHHHHHHhh--c--cCCceEEEEEecCChHHHHHHHHHHhhc
Confidence            35789999999999996 566662  1  223 35778887654 446666665543

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=97.62  E-value=2.5e-05  Score=49.70  Aligned_cols=22  Identities=14%  Similarity=0.021  Sum_probs=20.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ++|.++|.+|+||||++..+..
T Consensus       100 ~vI~ivG~~GvGKTTla~~La~  121 (432)
T 2v3c_C          100 NVILLVGIQGSGKTTTAAKLAR  121 (432)
T ss_dssp             CCEEEECCSSSSTTHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999998877

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=97.62  E-value=3.3e-05  Score=48.25  Aligned_cols=22  Identities=14%  Similarity=0.131  Sum_probs=19.9

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|+|++|+||||+++.+..
T Consensus       137 ~~i~ivG~~GsGKTTll~~l~~  158 (372)
T 2ewv_A          137 GLILVTGPTGSGKSTTIASMID  158 (372)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            5789999999999999998876

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=97.62  E-value=3.4e-05  Score=50.15  Aligned_cols=22  Identities=9%  Similarity=-0.014  Sum_probs=20.0

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+|.++|++|+||||+|+.+..
T Consensus        36 ~lIvlvGlpGSGKSTia~~La~   57 (520)
T 2axn_A           36 TVIVMVGLPARGKTYISKKLTR   57 (520)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4788999999999999999876

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=97.62  E-value=3.4e-05  Score=41.84  Aligned_cols=22  Identities=9%  Similarity=0.096  Sum_probs=19.6

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.+.|.+|+|||||...+...
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~   24 (161)
T 2dyk_A            3 KVVIVGRPNVGKSSLFNRLLKK   24 (161)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999998864

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=97.62  E-value=2e-05  Score=48.00  Aligned_cols=21  Identities=10%  Similarity=-0.083  Sum_probs=19.1

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      -+.++|++|+|||+||+.+.+
T Consensus        48 ~vll~G~pGtGKT~la~~la~   68 (331)
T 2r44_A           48 HILLEGVPGLAKTLSVNTLAK   68 (331)
T ss_dssp             CEEEESCCCHHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            477899999999999999887

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=97.62  E-value=3.5e-05  Score=47.94  Aligned_cols=22  Identities=14%  Similarity=0.125  Sum_probs=19.8

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ++++|.|+.|+|||||.+.+..
T Consensus       124 g~i~I~GptGSGKTTlL~~l~g  145 (356)
T 3jvv_A          124 GLVLVTGPTGSGKSTTLAAMLD  145 (356)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            5799999999999999998765

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=97.61  E-value=4.1e-05  Score=42.50  Aligned_cols=22  Identities=9%  Similarity=-0.019  Sum_probs=19.9

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .|+|+|.+|+|||||...+...
T Consensus         6 ki~ivG~~g~GKStLl~~l~~~   27 (172)
T 2gj8_A            6 KVVIAGRPNAGKSSLLNALAGR   27 (172)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999999874

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=97.61  E-value=4.2e-05  Score=41.71  Aligned_cols=22  Identities=5%  Similarity=0.104  Sum_probs=19.4

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.+.|.+|+|||||...+...
T Consensus         7 ~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            7 KMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            4788999999999999998864

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=97.61  E-value=2.5e-05  Score=51.14  Aligned_cols=22  Identities=9%  Similarity=-0.147  Sum_probs=20.3

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|.|++|+|||||++.+..
T Consensus       370 ~iI~LiG~sGSGKSTLar~La~  391 (552)
T 3cr8_A          370 FTVFFTGLSGAGKSTLARALAA  391 (552)
T ss_dssp             EEEEEEESSCHHHHHHHHHHHH
T ss_pred             eEEEEECCCCChHHHHHHHHHH
Confidence            4789999999999999999887

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=97.61  E-value=3.7e-05  Score=49.05  Aligned_cols=22  Identities=14%  Similarity=0.054  Sum_probs=19.9

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +-+.++|++|+|||++|+.+.+
T Consensus        64 ~~iLl~GppGtGKT~la~ala~   85 (456)
T 2c9o_A           64 RAVLLAGPPGTGKTALALAIAQ   85 (456)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCcCCHHHHHHHHHH
Confidence            4578899999999999999988

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=97.61  E-value=3.6e-05  Score=41.72  Aligned_cols=22  Identities=18%  Similarity=0.223  Sum_probs=19.5

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.+.|.+|+|||||...+...
T Consensus         5 ~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3789999999999999998764

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=97.60  E-value=4.3e-05  Score=48.09  Aligned_cols=22  Identities=9%  Similarity=0.067  Sum_probs=20.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|.|++|+|||||.+.+..
T Consensus        48 e~~~llGpsGsGKSTLLr~iaG   69 (390)
T 3gd7_A           48 QRVGLLGRTGSGKSTLLSAFLR   69 (390)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCChHHHHHHHHhC
Confidence            4789999999999999999876

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=97.60  E-value=4.3e-05  Score=47.12  Aligned_cols=22  Identities=9%  Similarity=-0.144  Sum_probs=19.8

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|.|++|+|||||.+.+..
T Consensus        56 ~~v~i~G~~GaGKSTLl~~l~g   77 (337)
T 2qm8_A           56 IRVGITGVPGVGKSTTIDALGS   77 (337)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999999873

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=97.60  E-value=4.6e-05  Score=41.68  Aligned_cols=21  Identities=10%  Similarity=0.056  Sum_probs=18.6

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      -|.+.|.+|+|||||...+..
T Consensus         4 ki~ivG~~~~GKSsli~~l~~   24 (169)
T 3q85_A            4 KVMLVGESGVGKSTLAGTFGG   24 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            378999999999999999864

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=97.60  E-value=3.3e-05  Score=48.83  Aligned_cols=22  Identities=9%  Similarity=0.105  Sum_probs=20.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+|+|.|++|+||||||..++.
T Consensus         3 ~~i~i~GptgsGKttla~~La~   24 (409)
T 3eph_A            3 KVIVIAGTTGVGKSQLSIQLAQ   24 (409)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHH
T ss_pred             cEEEEECcchhhHHHHHHHHHH
Confidence            5789999999999999998876

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=97.60  E-value=2e-05  Score=44.82  Aligned_cols=23  Identities=13%  Similarity=-0.071  Sum_probs=20.1

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      ..|+|+|.+|+|||||.+.+...
T Consensus        27 ~~v~lvG~~g~GKSTLl~~l~g~   49 (210)
T 1pui_A           27 IEVAFAGRSNAGKSSALNTLTNQ   49 (210)
T ss_dssp             EEEEEEECTTSSHHHHHTTTCCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            36899999999999999988763

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=97.60  E-value=1.6e-05  Score=48.58  Aligned_cols=21  Identities=5%  Similarity=-0.059  Sum_probs=19.2

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      -+.++|++|+|||++|+.+++
T Consensus        47 ~vLl~G~~GtGKT~la~~la~   67 (350)
T 1g8p_A           47 GVLVFGDRGTGKSTAVRALAA   67 (350)
T ss_dssp             CEEEECCGGGCTTHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHH
Confidence            378999999999999999987

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=97.59  E-value=3.6e-05  Score=49.85  Aligned_cols=22  Identities=9%  Similarity=0.007  Sum_probs=19.9

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +-+.++|++|+|||+||+.+.+
T Consensus        42 ~~VLL~GpPGtGKT~LAraLa~   63 (500)
T 3nbx_X           42 ESVFLLGPPGIAKSLIARRLKF   63 (500)
T ss_dssp             CEEEEECCSSSSHHHHHHHGGG
T ss_pred             CeeEeecCchHHHHHHHHHHHH
Confidence            3578999999999999999988

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=97.59  E-value=3.9e-05  Score=46.57  Aligned_cols=24  Identities=13%  Similarity=0.242  Sum_probs=21.4

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhcC
Q 037564            2 SGCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      ++.|+|+|.+|+|||||...+...
T Consensus         8 ~~~VaIvG~~nvGKSTLln~L~g~   31 (301)
T 1ega_A            8 CGFIAIVGRPNVGKSTLLNKLLGQ   31 (301)
T ss_dssp             EEEEEEECSSSSSHHHHHHHHHTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCC
Confidence            357999999999999999999875

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=97.59  E-value=4.8e-05  Score=41.57  Aligned_cols=22  Identities=5%  Similarity=0.122  Sum_probs=19.5

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.++|.+|+|||||...+...
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~   26 (172)
T 2erx_A            5 RVAVFGAGGVGKSSLVLRFVKG   26 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999999864

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=97.59  E-value=4.1e-05  Score=41.77  Aligned_cols=22  Identities=14%  Similarity=-0.005  Sum_probs=19.3

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.++|.+|+|||||...+...
T Consensus         4 ki~~vG~~~~GKSsli~~l~~~   25 (166)
T 3q72_A            4 KVLLLGAPGVGKSALARIFGGV   25 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCC
T ss_pred             EEEEECCCCCCHHHHHHHHcCc
Confidence            4789999999999999998753

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=97.58  E-value=4.4e-05  Score=48.98  Aligned_cols=23  Identities=17%  Similarity=0.099  Sum_probs=20.6

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .+++|.|++|+|||||++.++.-
T Consensus       139 e~v~IvGpnGsGKSTLlr~L~Gl  161 (460)
T 2npi_A          139 PRVVIVGGSQTGKTSLSRTLCSY  161 (460)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCc
Confidence            57899999999999999988763

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=97.57  E-value=4.3e-05  Score=42.83  Aligned_cols=22  Identities=14%  Similarity=0.013  Sum_probs=19.9

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .|.++|.+|+|||||...+...
T Consensus        50 ~i~vvG~~g~GKSsll~~l~~~   71 (193)
T 2ged_A           50 SIIIAGPQNSGKTSLLTLLTTD   71 (193)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5889999999999999998864

>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*

Probab=97.57  E-value=4.4e-05  Score=49.07  Aligned_cols=54  Identities=13%  Similarity=0.135  Sum_probs=35.9

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccC--CCeeEEEEeCCC-CCHHHHHHHHHHh
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFY--FDCHAWVRVSIS-YDFRMVLDDIIKS   56 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~--f~~~~wv~~~~~-~~~~~ll~~il~~   56 (93)
                      .-++|.|.+|+|||+|+..++.+....+.  =+.++++-+.+. ....++.+.+.+.
T Consensus       153 Qr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~  209 (469)
T 2c61_A          153 QKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKT  209 (469)
T ss_dssp             CBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhc
Confidence            35688999999999999988874333211  135667666654 3456677776653

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=97.56  E-value=5.1e-05  Score=47.00  Aligned_cols=22  Identities=9%  Similarity=-0.141  Sum_probs=19.9

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+|+|+|.+|+|||||+..+..
T Consensus        80 ~~I~i~G~~G~GKSTl~~~L~~  101 (355)
T 3p32_A           80 HRVGITGVPGVGKSTAIEALGM  101 (355)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999865

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=97.56  E-value=5.1e-05  Score=42.41  Aligned_cols=22  Identities=18%  Similarity=0.223  Sum_probs=19.5

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.++|.+|+|||||+..+...
T Consensus        23 ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           23 KLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            4788999999999999999864

>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A

Probab=97.56  E-value=0.00024  Score=46.69  Aligned_cols=47  Identities=13%  Similarity=0.064  Sum_probs=34.1

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCC-HHHHHHHH
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYD-FRMVLDDI   53 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~ll~~i   53 (93)
                      .-++|.|.+|+|||+|+..+.+.    .+-+.++++-+.+..+ ..++++.+
T Consensus       228 qr~~I~g~~g~GKT~L~~~ia~~----~~~~~~V~~~iGER~~Ev~e~~~~~  275 (588)
T 3mfy_A          228 GTAAIPGPAGSGKTVTQHQLAKW----SDAQVVIYIGCGERGNEMTDVLEEF  275 (588)
T ss_dssp             CEEEECSCCSHHHHHHHHHHHHH----SSCSEEEEEECCSSSSHHHHHHHHT
T ss_pred             CeEEeecCCCCCHHHHHHHHHhc----cCCCEEEEEEecccHHHHHHHHHHH
Confidence            45789999999999999998762    2335678888876654 45555554

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=97.56  E-value=0.00013  Score=42.83  Aligned_cols=39  Identities=8%  Similarity=-0.279  Sum_probs=25.5

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcCccccc-CCCeeEEEEeCCCCC
Q 037564            4 CKPILDSSSFDKTAFTADTYNNNHVKF-YFDCHAWVRVSISYD   45 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~~~~~~-~f~~~~wv~~~~~~~   45 (93)
                      .|.+.|.||+||||+|..+..  .... .++ +.++.+....+
T Consensus         8 ~I~~~~kgGvGKTt~a~~la~--~l~~~G~~-V~v~d~D~q~~   47 (228)
T 2r8r_A            8 KVFLGAAPGVGKTYAMLQAAH--AQLRQGVR-VMAGVVETHGR   47 (228)
T ss_dssp             EEEEESSTTSSHHHHHHHHHH--HHHHTTCC-EEEEECCCTTC
T ss_pred             EEEEECCCCCcHHHHHHHHHH--HHHHCCCC-EEEEEeCCCCC
Confidence            367889999999999988887  4333 233 33444444333

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=97.56  E-value=4.1e-05  Score=47.67  Aligned_cols=21  Identities=14%  Similarity=0.330  Sum_probs=18.8

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .|.++|++|+||||+++.++.
T Consensus        26 ~i~l~G~~G~GKTTl~~~la~   46 (359)
T 2ga8_A           26 CVILVGSPGSGKSTIAEELCQ   46 (359)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            388999999999999998776

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=97.55  E-value=3.9e-05  Score=46.57  Aligned_cols=21  Identities=10%  Similarity=0.202  Sum_probs=18.5

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      -|+|+|.+|+|||||.+.++.
T Consensus        20 ~I~lvG~nG~GKSTLl~~L~g   40 (301)
T 2qnr_A           20 TLMVVGESGLGKSTLINSLFL   40 (301)
T ss_dssp             EEEEEEETTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            358999999999999999765

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=97.55  E-value=5e-05  Score=41.27  Aligned_cols=22  Identities=23%  Similarity=0.219  Sum_probs=19.3

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.+.|.+|+|||||...+...
T Consensus         5 ~i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            5 KVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999998754

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=97.55  E-value=5.8e-05  Score=41.04  Aligned_cols=22  Identities=18%  Similarity=0.157  Sum_probs=19.5

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.+.|.+|+|||||...+...
T Consensus         6 ~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            6 KVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999998764

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=97.55  E-value=4.8e-05  Score=42.47  Aligned_cols=22  Identities=18%  Similarity=0.066  Sum_probs=19.4

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.++|.+|+|||||...+...
T Consensus         9 ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            9 KIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4688999999999999998864

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=97.55  E-value=0.00033  Score=39.63  Aligned_cols=41  Identities=12%  Similarity=-0.094  Sum_probs=26.6

Q ss_pred             ceeeEE-cCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCC
Q 037564            3 GCKPIL-DSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYD   45 (93)
Q Consensus         3 ~~i~i~-G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~   45 (93)
                      ++|+|+ +-||+||||+|..+..  .+...-..+..+......+
T Consensus         2 ~vi~v~s~kgG~GKTt~a~~la~--~la~~g~~vlliD~D~~~~   43 (206)
T 4dzz_A            2 KVISFLNPKGGSGKTTAVINIAT--ALSRSGYNIAVVDTDPQMS   43 (206)
T ss_dssp             EEEEECCSSTTSSHHHHHHHHHH--HHHHTTCCEEEEECCTTCH
T ss_pred             eEEEEEeCCCCccHHHHHHHHHH--HHHHCCCeEEEEECCCCCC
Confidence            467777 6789999999998887  4443322345555544433

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=97.54  E-value=5.7e-05  Score=47.89  Aligned_cols=22  Identities=9%  Similarity=0.046  Sum_probs=20.4

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|.|++|+|||||.+.+..
T Consensus        70 ~~valvG~nGaGKSTLln~L~G   91 (413)
T 1tq4_A           70 LNVAVTGETGSGKSSFINTLRG   91 (413)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHT
T ss_pred             eEEEEECCCCCcHHHHHHHHhC
Confidence            4899999999999999999987

>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10

Probab=97.54  E-value=0.00013  Score=43.12  Aligned_cols=22  Identities=14%  Similarity=0.102  Sum_probs=19.5

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ++|+|.|-||+||||+|..+..
T Consensus         2 ~vI~vs~KGGvGKTT~a~nLA~   23 (269)
T 1cp2_A            2 RQVAIYGKGGIGKSTTTQNLTS   23 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEEecCCCCcHHHHHHHHHH
Confidence            5788899999999999998877

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=97.54  E-value=5.1e-05  Score=41.48  Aligned_cols=22  Identities=18%  Similarity=0.170  Sum_probs=19.5

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.+.|.+|+|||||...+...
T Consensus         8 ~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            8 KVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            4789999999999999998864

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.54  E-value=6.4e-05  Score=45.66  Aligned_cols=21  Identities=10%  Similarity=-0.056  Sum_probs=19.4

Q ss_pred             ceeeEEcCCCCcHHHHHHHHh
Q 037564            3 GCKPILDSSSFDKTAFTADTY   23 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~   23 (93)
                      .++++.|++|+|||||.+.+.
T Consensus       166 ~i~~l~G~sG~GKSTLln~l~  186 (302)
T 2yv5_A          166 FICILAGPSGVGKSSILSRLT  186 (302)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            478999999999999999997

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=97.54  E-value=5e-05  Score=43.59  Aligned_cols=22  Identities=5%  Similarity=-0.260  Sum_probs=20.5

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+|+|.|+.|+||||+++.+..
T Consensus         7 ~iI~i~g~~GsGk~ti~~~la~   28 (201)
T 3fdi_A            7 IIIAIGREFGSGGHLVAKKLAE   28 (201)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEeCCCCCCHHHHHHHHHH
Confidence            4899999999999999999887

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=97.54  E-value=6e-05  Score=41.03  Aligned_cols=22  Identities=23%  Similarity=0.216  Sum_probs=19.4

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.+.|.+|+|||||...+...
T Consensus         5 ki~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            5 KLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999998764

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=97.54  E-value=4.3e-05  Score=48.86  Aligned_cols=22  Identities=9%  Similarity=0.068  Sum_probs=19.8

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +-|.++|++|+||||+|+.++.
T Consensus        51 ~~iLl~GppGtGKT~lar~lA~   72 (444)
T 1g41_A           51 KNILMIGPTGVGKTEIARRLAK   72 (444)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEcCCCCCHHHHHHHHHH
Confidence            3578899999999999999988

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=97.54  E-value=4.6e-05  Score=45.83  Aligned_cols=20  Identities=15%  Similarity=-0.066  Sum_probs=18.8

Q ss_pred             eeEEcCCCCcHHHHHHHHhc
Q 037564            5 KPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +.++|++|+|||++|+.+++
T Consensus        41 ~ll~G~~G~GKt~la~~l~~   60 (319)
T 2chq_A           41 LLFSGPPGTGKTATAIALAR   60 (319)
T ss_dssp             EEEESSSSSSHHHHHHHHHH
T ss_pred             EEEECcCCcCHHHHHHHHHH
Confidence            78999999999999999887

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.54  E-value=5.3e-05  Score=41.32  Aligned_cols=22  Identities=14%  Similarity=0.146  Sum_probs=19.3

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.+.|.+|+|||||...+...
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1ek0_A            5 KLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999998764

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=97.54  E-value=3.8e-05  Score=49.25  Aligned_cols=21  Identities=14%  Similarity=0.156  Sum_probs=18.9

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      -+.++|++|+|||++|+.++.
T Consensus       203 ~~LL~G~pG~GKT~la~~la~  223 (468)
T 3pxg_A          203 NPVLIGEPGVGKTAIAEGLAQ  223 (468)
T ss_dssp             EEEEESCTTTTTHHHHHHHHH
T ss_pred             CeEEECCCCCCHHHHHHHHHH
Confidence            357899999999999999887

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=97.54  E-value=6.1e-05  Score=42.64  Aligned_cols=23  Identities=13%  Similarity=-0.123  Sum_probs=19.3

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ..++.++|+.|+||||++.+++.
T Consensus         3 g~i~vi~G~~gsGKTT~ll~~~~   25 (184)
T 2orw_A            3 GKLTVITGPMYSGKTTELLSFVE   25 (184)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHH
Confidence            35788999999999999976665

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=97.53  E-value=5.3e-05  Score=42.32  Aligned_cols=22  Identities=14%  Similarity=0.051  Sum_probs=19.9

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.++|.+|+|||||...+...
T Consensus        18 ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           18 RILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999999874

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=97.53  E-value=5.5e-05  Score=41.73  Aligned_cols=22  Identities=18%  Similarity=0.148  Sum_probs=19.6

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.+.|.+|+|||||...+...
T Consensus        11 ~i~v~G~~~~GKssl~~~l~~~   32 (181)
T 3tw8_B           11 KLLIIGDSGVGKSSLLLRFADN   32 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHCSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999998864

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=97.53  E-value=5.9e-05  Score=42.02  Aligned_cols=22  Identities=9%  Similarity=0.003  Sum_probs=19.6

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.+.|.+|+|||||...+...
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~   24 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTGK   24 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCc
Confidence            3789999999999999998875

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=97.52  E-value=5.7e-05  Score=41.12  Aligned_cols=20  Identities=10%  Similarity=-0.077  Sum_probs=18.3

Q ss_pred             eeEEcCCCCcHHHHHHHHhc
Q 037564            5 KPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~   24 (93)
                      |.+.|.+|+|||||...+..
T Consensus         3 i~~~G~~~~GKssl~~~l~~   22 (164)
T 1r8s_A            3 ILMVGLDAAGKTTILYKLKL   22 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHc
Confidence            78999999999999999865

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=97.52  E-value=0.00012  Score=48.25  Aligned_cols=22  Identities=5%  Similarity=0.015  Sum_probs=20.3

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ..+.|+|++|+||||||+.++.
T Consensus        61 ~~vll~Gp~GtGKTtlar~ia~   82 (604)
T 3k1j_A           61 RHVLLIGEPGTGKSMLGQAMAE   82 (604)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEeCCCCCHHHHHHHHhc
Confidence            4688999999999999999988

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=97.52  E-value=6.5e-05  Score=41.41  Aligned_cols=22  Identities=18%  Similarity=0.089  Sum_probs=19.4

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.+.|.+|+|||||...+...
T Consensus         8 ki~v~G~~~~GKssl~~~l~~~   29 (178)
T 2hxs_A            8 KIVVLGDGASGKTSLTTCFAQE   29 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHGG
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            4789999999999999998764

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=97.52  E-value=6.1e-05  Score=42.23  Aligned_cols=23  Identities=17%  Similarity=0.189  Sum_probs=20.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      ..|.++|.+|+|||||...+...
T Consensus        24 ~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           24 PEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            35789999999999999999874

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=97.52  E-value=5.8e-05  Score=46.78  Aligned_cols=22  Identities=18%  Similarity=0.126  Sum_probs=20.5

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|.|++|+|||||.+.+..
T Consensus        72 q~~gIiG~nGaGKTTLl~~I~g   93 (347)
T 2obl_A           72 QRIGIFAGSGVGKSTLLGMICN   93 (347)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            4789999999999999999988

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.52  E-value=6.8e-05  Score=46.72  Aligned_cols=23  Identities=9%  Similarity=0.007  Sum_probs=20.7

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .++++.|++|+|||||.+.+...
T Consensus       216 ~~~~lvG~sG~GKSTLln~L~g~  238 (358)
T 2rcn_A          216 RISIFAGQSGVGKSSLLNALLGL  238 (358)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHCC
T ss_pred             CEEEEECCCCccHHHHHHHHhcc
Confidence            47899999999999999999874

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=97.52  E-value=5.6e-05  Score=41.72  Aligned_cols=22  Identities=27%  Similarity=0.220  Sum_probs=19.4

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.+.|.+|+|||||...+...
T Consensus        10 ~i~v~G~~~~GKSsli~~l~~~   31 (182)
T 1ky3_A           10 KVIILGDSGVGKTSLMHRYVND   31 (182)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999998764

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=97.52  E-value=5.7e-05  Score=41.24  Aligned_cols=22  Identities=9%  Similarity=0.063  Sum_probs=19.5

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.+.|.+|+|||||...+...
T Consensus         8 ~i~v~G~~~~GKSsli~~l~~~   29 (170)
T 1z0j_A            8 KVCLLGDTGVGKSSIMWRFVED   29 (170)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            4788999999999999998864

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=97.52  E-value=6.5e-05  Score=46.53  Aligned_cols=22  Identities=9%  Similarity=-0.109  Sum_probs=20.1

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+|+|+|.+|+|||||...+..
T Consensus        75 ~~v~lvG~pgaGKSTLln~L~~   96 (349)
T 2www_A           75 FRVGLSGPPGAGKSTFIEYFGK   96 (349)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Confidence            4789999999999999999875

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=97.51  E-value=5.7e-05  Score=42.35  Aligned_cols=22  Identities=18%  Similarity=0.080  Sum_probs=19.0

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.++|.+|+|||||...+...
T Consensus        22 ki~ivG~~~vGKSsL~~~~~~~   43 (184)
T 3ihw_A           22 KVGIVGNLSSGKSALVHRYLTG   43 (184)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999887764

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=97.51  E-value=5.3e-05  Score=42.92  Aligned_cols=21  Identities=10%  Similarity=0.056  Sum_probs=18.6

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      -|.++|.+|+|||||...+..
T Consensus        25 ki~vvG~~~vGKSsLi~~l~~   45 (195)
T 3cbq_A           25 KVMLVGESGVGKSTLAGTFGG   45 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            478999999999999999853

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=97.51  E-value=4.7e-05  Score=43.17  Aligned_cols=22  Identities=14%  Similarity=-0.002  Sum_probs=19.6

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|+++|.+|+|||||...+...
T Consensus        27 ki~lvG~~~vGKSsLi~~l~~~   48 (198)
T 1f6b_A           27 KLVFLGLDNAGKTTLLHMLKDD   48 (198)
T ss_dssp             EEEEEEETTSSHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999998763

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=97.51  E-value=8.3e-05  Score=40.98  Aligned_cols=23  Identities=13%  Similarity=0.134  Sum_probs=20.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      ..|.+.|.+|+|||||...+...
T Consensus         9 ~~i~v~G~~~~GKssl~~~l~~~   31 (178)
T 2lkc_A            9 PVVTIMGHVDHGKTTLLDAIRHS   31 (178)
T ss_dssp             CEEEEESCTTTTHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            46889999999999999998763

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=97.51  E-value=6.4e-05  Score=41.99  Aligned_cols=22  Identities=14%  Similarity=0.235  Sum_probs=20.0

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .|.+.|.+|+|||||...+...
T Consensus        25 ~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 3pqc_A           25 EVAFVGRSNVGKSSLLNALFNR   46 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5889999999999999999875

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.51  E-value=5.7e-05  Score=43.19  Aligned_cols=22  Identities=14%  Similarity=0.013  Sum_probs=19.9

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .|.++|.+|+|||||...+...
T Consensus        14 ~i~~~G~~g~GKTsl~~~l~~~   35 (218)
T 1nrj_B           14 SIIIAGPQNSGKTSLLTLLTTD   35 (218)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999998874

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=97.51  E-value=5.9e-05  Score=41.55  Aligned_cols=22  Identities=14%  Similarity=0.142  Sum_probs=19.4

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.+.|.+|+|||||...+...
T Consensus         9 ~i~v~G~~~~GKSsli~~l~~~   30 (177)
T 1wms_A            9 KVILLGDGGVGKSSLMNRYVTN   30 (177)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999998764

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=97.51  E-value=5.6e-05  Score=50.21  Aligned_cols=22  Identities=14%  Similarity=-0.080  Sum_probs=20.1

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+|.+.|++|+||||+|+.+..
T Consensus        53 ~lIvLtGlsGSGKSTlAr~La~   74 (630)
T 1x6v_B           53 CTVWLTGLSGAGKTTVSMALEE   74 (630)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEeCCCCCHHHHHHHHHH
Confidence            4789999999999999999877

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=97.50  E-value=5.6e-05  Score=48.41  Aligned_cols=21  Identities=10%  Similarity=-0.021  Sum_probs=19.5

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +|.++|++|+||||+++.+..
T Consensus        41 ~IvlvGlpGsGKSTia~~La~   61 (469)
T 1bif_A           41 LIVMVGLPARGKTYISKKLTR   61 (469)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            688999999999999999876

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=97.50  E-value=6.3e-05  Score=41.02  Aligned_cols=22  Identities=14%  Similarity=0.125  Sum_probs=19.3

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.++|.+|+|||||...+...
T Consensus         8 ~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1r2q_A            8 KLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999998853

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=97.50  E-value=6.1e-05  Score=41.12  Aligned_cols=22  Identities=9%  Similarity=0.113  Sum_probs=19.4

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.+.|.+|+|||||...+...
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1g16_A            5 KILLIGDSGVGKSCLLVRFVED   26 (170)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            4789999999999999998764

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=97.50  E-value=6e-05  Score=41.57  Aligned_cols=22  Identities=14%  Similarity=0.155  Sum_probs=19.7

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.+.|.+|+|||||...+...
T Consensus        11 ~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A           11 KLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5789999999999999998764

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.50  E-value=6.2e-05  Score=47.90  Aligned_cols=21  Identities=10%  Similarity=0.241  Sum_probs=19.2

Q ss_pred             eeEEcCCCCcHHHHHHHHhcC
Q 037564            5 KPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      ++|+|++|+|||||.+.++.-
T Consensus        45 vaLvG~nGaGKSTLln~L~G~   65 (427)
T 2qag_B           45 ILCVGETGLGKSTLMDTLFNT   65 (427)
T ss_dssp             EEEECSTTSSSHHHHHHHHTS
T ss_pred             EEEECCCCCCHHHHHHHHhCc
Confidence            899999999999999998763

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=97.49  E-value=6.4e-05  Score=47.71  Aligned_cols=22  Identities=9%  Similarity=0.025  Sum_probs=20.1

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|.|+.|+||||+.+.+..
T Consensus       168 gii~I~GpnGSGKTTlL~allg  189 (418)
T 1p9r_A          168 GIILVTGPTGSGKSTTLYAGLQ  189 (418)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHh
Confidence            5789999999999999998876

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=97.49  E-value=0.00017  Score=41.93  Aligned_cols=23  Identities=17%  Similarity=-0.038  Sum_probs=20.9

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ...|.+.|+.|+||||+++.+..
T Consensus         5 g~~i~~eG~~g~GKst~~~~l~~   27 (216)
T 3tmk_A            5 GKLILIEGLDRTGKTTQCNILYK   27 (216)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35789999999999999999988

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=97.49  E-value=6.2e-05  Score=42.37  Aligned_cols=22  Identities=18%  Similarity=0.015  Sum_probs=19.7

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|++.|.+|+|||||...+...
T Consensus        25 ki~~vG~~~vGKSsli~~l~~~   46 (190)
T 1m2o_B           25 KLLFLGLDNAGKTTLLHMLKND   46 (190)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999998863

>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*

Probab=97.49  E-value=7.4e-05  Score=42.90  Aligned_cols=21  Identities=14%  Similarity=0.006  Sum_probs=16.1

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .|-+++..|.||||.|-.+.-
T Consensus        30 ~i~v~tG~GkGKTTaA~Glal   50 (196)
T 1g5t_A           30 IIIVFTGNGKGKTTAAFGTAA   50 (196)
T ss_dssp             CEEEEESSSSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            455666678999999887765

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=97.49  E-value=7.4e-05  Score=48.77  Aligned_cols=22  Identities=9%  Similarity=-0.082  Sum_probs=20.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|+|++|+|||||++.+..
T Consensus        48 e~~~LvG~NGaGKSTLlk~l~G   69 (538)
T 1yqt_A           48 MVVGIVGPNGTGKSTAVKILAG   69 (538)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            4789999999999999999886

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=97.48  E-value=0.00021  Score=40.52  Aligned_cols=21  Identities=5%  Similarity=-0.031  Sum_probs=19.1

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ++.|+|.+|+|||++|.++..
T Consensus         1 ~ilV~Gg~~SGKS~~A~~la~   21 (180)
T 1c9k_A            1 MILVTGGARSGKSRHAEALIG   21 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHHC
T ss_pred             CEEEECCCCCcHHHHHHHHHh
Confidence            378999999999999999987

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=97.48  E-value=6.6e-05  Score=42.11  Aligned_cols=22  Identities=23%  Similarity=0.208  Sum_probs=19.3

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.++|.+|+|||||...+...
T Consensus        23 ki~vvG~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           23 NLAILGRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCcHHHHHHHHHhC
Confidence            4789999999999999988764

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=97.48  E-value=6.9e-05  Score=41.25  Aligned_cols=22  Identities=9%  Similarity=0.043  Sum_probs=19.6

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.++|.+|+|||||...+...
T Consensus        17 ~i~v~G~~~~GKSsli~~l~~~   38 (179)
T 1z0f_A           17 KYIIIGDMGVGKSCLLHQFTEK   38 (179)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999998864

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=97.48  E-value=7.3e-05  Score=48.81  Aligned_cols=22  Identities=23%  Similarity=0.196  Sum_probs=20.5

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|.|++|+|||||++.++.
T Consensus       295 ei~~i~G~nGsGKSTLl~~l~G  316 (538)
T 3ozx_A          295 EIIGILGPNGIGKTTFARILVG  316 (538)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            4789999999999999999987

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=97.48  E-value=6.5e-05  Score=49.41  Aligned_cols=22  Identities=9%  Similarity=-0.209  Sum_probs=20.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+|.+.|++|+||||+|+.+..
T Consensus       397 ~~I~l~GlsGSGKSTiA~~La~  418 (573)
T 1m8p_A          397 FTIFLTGYMNSGKDAIARALQV  418 (573)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEeecCCCCCHHHHHHHHHH
Confidence            4789999999999999999877

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=97.47  E-value=6.8e-05  Score=48.97  Aligned_cols=22  Identities=14%  Similarity=0.013  Sum_probs=20.3

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|.|++|+|||||.+.+..
T Consensus        26 ei~gLiGpNGaGKSTLlkiL~G   47 (538)
T 3ozx_A           26 TILGVLGKNGVGKTTVLKILAG   47 (538)
T ss_dssp             EEEEEECCTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCcHHHHHHHHhc
Confidence            4789999999999999999886

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=97.47  E-value=7.1e-05  Score=41.68  Aligned_cols=22  Identities=18%  Similarity=0.022  Sum_probs=19.5

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.++|.+|+|||||...+...
T Consensus        13 ki~v~G~~~~GKSsli~~l~~~   34 (195)
T 3bc1_A           13 KFLALGDSGVGKTSVLYQYTDG   34 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999998863

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=97.46  E-value=7.5e-05  Score=40.85  Aligned_cols=22  Identities=18%  Similarity=-0.046  Sum_probs=19.4

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.+.|.+|+|||||...+...
T Consensus         9 ~i~v~G~~~~GKssl~~~l~~~   30 (171)
T 1upt_A            9 RILILGLDGAGKTTILYRLQVG   30 (171)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999998753

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=97.46  E-value=8.4e-05  Score=48.52  Aligned_cols=23  Identities=17%  Similarity=0.130  Sum_probs=21.0

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .+++|.|+.|+|||||++.++.-
T Consensus       313 e~~~i~G~NGsGKSTLlk~l~Gl  335 (538)
T 1yqt_A          313 EVIGIVGPNGIGKTTFVKMLAGV  335 (538)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            48899999999999999999873

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=97.46  E-value=8.6e-05  Score=41.20  Aligned_cols=22  Identities=14%  Similarity=0.243  Sum_probs=19.5

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.++|.+|+|||||...+...
T Consensus        20 ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           20 KLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999998864

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=97.46  E-value=8.5e-05  Score=41.96  Aligned_cols=21  Identities=5%  Similarity=0.015  Sum_probs=18.6

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      -|.++|.+|+|||||...+..
T Consensus         8 kv~lvG~~~vGKSsL~~~~~~   28 (192)
T 2cjw_A            8 RVVLIGEQGVGKSTLANIFAG   28 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            378999999999999999873

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=97.46  E-value=7.4e-05  Score=41.52  Aligned_cols=22  Identities=18%  Similarity=0.225  Sum_probs=19.5

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.+.|.+|+|||||...+...
T Consensus         6 ki~v~G~~~~GKSsli~~l~~~   27 (189)
T 4dsu_A            6 KLVVVGADGVGKSALTIQLIQN   27 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3789999999999999999864

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=97.46  E-value=7.5e-05  Score=41.88  Aligned_cols=22  Identities=18%  Similarity=0.143  Sum_probs=19.5

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|+|+|.+|+|||||...+...
T Consensus        27 ki~v~G~~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           27 KVVLIGESGVGKTNLLSRFTRN   48 (193)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            4789999999999999998764

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=97.45  E-value=7.5e-05  Score=41.50  Aligned_cols=22  Identities=5%  Similarity=0.043  Sum_probs=19.4

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.+.|.+|+|||||...+...
T Consensus        12 ki~v~G~~~~GKSsli~~l~~~   33 (186)
T 2bme_A           12 KFLVIGNAGTGKSCLLHQFIEK   33 (186)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999998764

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=97.45  E-value=9.1e-05  Score=41.86  Aligned_cols=22  Identities=27%  Similarity=0.235  Sum_probs=19.7

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.++|.+|+|||||...+...
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~   31 (203)
T 1zbd_A           10 KILIIGNSSVGKTSFLFRYADD   31 (203)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999998874

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=97.45  E-value=0.0001  Score=42.88  Aligned_cols=49  Identities=14%  Similarity=0.121  Sum_probs=30.9

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHHH
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDII   54 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~il   54 (93)
                      .++.|.|.+|+|||++|.+++.+. ....-..+.|++...  +..++.+.+.
T Consensus        31 ~l~~i~G~pG~GKT~l~l~~~~~~-~~~~~~~v~~~s~E~--~~~~~~~~~~   79 (251)
T 2zts_A           31 TTVLLTGGTGTGKTTFAAQFIYKG-AEEYGEPGVFVTLEE--RARDLRREMA   79 (251)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH-HHHHCCCEEEEESSS--CHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHH-HHhcCCCceeecccC--CHHHHHHHHH
Confidence            578899999999999999876521 122223455655443  4555555443

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=97.45  E-value=7.8e-05  Score=41.67  Aligned_cols=21  Identities=14%  Similarity=-0.106  Sum_probs=18.1

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      -|.++|.+|+|||||.+.+..
T Consensus        16 ki~vvG~~~~GKssL~~~l~~   36 (198)
T 3t1o_A           16 KIVYYGPGLSGKTTNLKWIYS   36 (198)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            478999999999999987764

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=97.45  E-value=7.9e-05  Score=45.31  Aligned_cols=24  Identities=13%  Similarity=0.261  Sum_probs=21.5

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhcC
Q 037564            2 SGCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      ++.|+|+|.+|+|||||...+...
T Consensus        10 ~g~v~ivG~~nvGKSTLin~l~g~   33 (308)
T 3iev_A           10 VGYVAIVGKPNVGKSTLLNNLLGT   33 (308)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCC
Confidence            468999999999999999998874

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=97.45  E-value=8e-05  Score=41.28  Aligned_cols=22  Identities=14%  Similarity=0.107  Sum_probs=19.2

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.++|.+|+|||||...+...
T Consensus         7 ~i~~~G~~~~GKssl~~~l~~~   28 (186)
T 1mh1_A            7 KCVVVGDGAVGKTCLLISYTTN   28 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999988754

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=97.44  E-value=9e-05  Score=40.77  Aligned_cols=22  Identities=18%  Similarity=0.125  Sum_probs=19.3

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.++|.+|+|||||...+...
T Consensus        16 ~i~v~G~~~~GKssli~~l~~~   37 (179)
T 2y8e_A           16 KLVFLGEQSVGKTSLITRFMYD   37 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4788999999999999998753

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=97.44  E-value=8.5e-05  Score=47.98  Aligned_cols=22  Identities=9%  Similarity=-0.023  Sum_probs=19.5

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|.|++|+|||||.+.+..
T Consensus        30 e~~~liG~nGsGKSTLl~~l~G   51 (483)
T 3euj_A           30 LVTTLSGGNGAGKSTTMAGFVT   51 (483)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHhc
Confidence            4789999999999999998764

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=97.44  E-value=8e-05  Score=41.73  Aligned_cols=22  Identities=18%  Similarity=0.188  Sum_probs=19.8

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|+++|.+|+|||||...+...
T Consensus         9 ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            9 KTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999999875

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=97.44  E-value=9.2e-05  Score=43.17  Aligned_cols=22  Identities=9%  Similarity=0.040  Sum_probs=20.0

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|+++|.+|+|||||...+...
T Consensus        31 ~i~lvG~~g~GKStlin~l~g~   52 (239)
T 3lxx_A           31 RIVLVGKTGAGKSATGNSILGR   52 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHcCC
Confidence            5789999999999999998875

>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*

Probab=97.44  E-value=0.00018  Score=41.82  Aligned_cols=39  Identities=13%  Similarity=-0.039  Sum_probs=25.8

Q ss_pred             eeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCC
Q 037564            5 KPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYD   45 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~   45 (93)
                      |+|.|-||+||||+|..+..  .+...=..+.-+......+
T Consensus         3 I~vs~kGGvGKTt~a~~LA~--~la~~g~~VlliD~D~~~~   41 (254)
T 3kjh_A            3 LAVAGKGGVGKTTVAAGLIK--IMASDYDKIYAVDGDPDSC   41 (254)
T ss_dssp             EEEECSSSHHHHHHHHHHHH--HHTTTCSCEEEEEECTTSC
T ss_pred             EEEecCCCCCHHHHHHHHHH--HHHHCCCeEEEEeCCCCcC
Confidence            66799999999999999887  4433323344555544333

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=97.44  E-value=9.5e-05  Score=40.95  Aligned_cols=22  Identities=18%  Similarity=0.157  Sum_probs=19.5

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.++|.+|+|||||...+...
T Consensus        20 ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           20 KVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhhC
Confidence            4789999999999999998864

>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A

Probab=97.44  E-value=0.00018  Score=43.07  Aligned_cols=22  Identities=14%  Similarity=0.080  Sum_probs=19.6

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ++|+|.|-||+||||+|..+..
T Consensus         3 kvIavs~KGGvGKTT~a~nLA~   24 (289)
T 2afh_E            3 RQCAIYGKGGIGKSTTTQNLVA   24 (289)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEeCCCcCcHHHHHHHHHH
Confidence            5788899999999999998887

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=97.44  E-value=9e-05  Score=48.67  Aligned_cols=22  Identities=9%  Similarity=0.051  Sum_probs=20.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|+|++|+|||||++.+..
T Consensus       370 ~~~~ivG~sGsGKSTLl~~l~g  391 (582)
T 3b60_A          370 KTVALVGRSGSGKSTIASLITR  391 (582)
T ss_dssp             CEEEEEECTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhh
Confidence            4789999999999999999876

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=97.44  E-value=9.4e-05  Score=44.87  Aligned_cols=23  Identities=9%  Similarity=0.053  Sum_probs=20.4

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .++++.|++|+|||||.+.+...
T Consensus       170 eiv~l~G~sG~GKSTll~~l~g~  192 (301)
T 1u0l_A          170 KISTMAGLSGVGKSSLLNAINPG  192 (301)
T ss_dssp             SEEEEECSTTSSHHHHHHHHSTT
T ss_pred             CeEEEECCCCCcHHHHHHHhccc
Confidence            47899999999999999998763

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=97.44  E-value=9.8e-05  Score=49.78  Aligned_cols=21  Identities=14%  Similarity=0.107  Sum_probs=19.3

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+.++|++|+|||++|+.+++
T Consensus       523 ~~Ll~Gp~GtGKT~lA~ala~  543 (758)
T 3pxi_A          523 SFIFLGPTGVGKTELARALAE  543 (758)
T ss_dssp             EEEEESCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999999887

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=97.43  E-value=5.3e-05  Score=41.88  Aligned_cols=22  Identities=9%  Similarity=0.075  Sum_probs=19.4

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.+.|.+|+|||||...+...
T Consensus         9 ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            9 RLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             EEEEECCGGGCHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3789999999999999998864

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=97.43  E-value=9.5e-05  Score=40.94  Aligned_cols=22  Identities=23%  Similarity=0.187  Sum_probs=19.5

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.+.|.+|+|||||...+...
T Consensus         8 ki~~~G~~~~GKSsli~~l~~~   29 (181)
T 3t5g_A            8 KIAILGYRSVGKSSLTIQFVEG   29 (181)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            5789999999999999998853

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=97.43  E-value=9.9e-05  Score=41.65  Aligned_cols=22  Identities=5%  Similarity=0.070  Sum_probs=19.1

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.++|.+|+|||||.+.+.+.
T Consensus        22 ki~~vG~~~vGKTsLi~~l~~~   43 (196)
T 3llu_A           22 RILLMGLRRSGKSSIQKVVFHK   43 (196)
T ss_dssp             EEEEEESTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            4789999999999999987763

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=97.43  E-value=8.4e-05  Score=41.86  Aligned_cols=22  Identities=14%  Similarity=0.169  Sum_probs=19.5

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.++|.+|+|||||...+...
T Consensus        30 ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           30 KLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999998764

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=97.43  E-value=9.7e-05  Score=41.13  Aligned_cols=23  Identities=13%  Similarity=0.047  Sum_probs=20.2

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcCc
Q 037564            4 CKPILDSSSFDKTAFTADTYNNN   26 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~~   26 (93)
                      -|.+.|.+|+|||||...+....
T Consensus        20 ~i~v~G~~~~GKssl~~~l~~~~   42 (186)
T 1ksh_A           20 RLLMLGLDNAGKTTILKKFNGED   42 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998653

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=97.43  E-value=8.3e-05  Score=43.70  Aligned_cols=21  Identities=10%  Similarity=-0.095  Sum_probs=19.1

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      -+++.|++|+||||+|+.+..
T Consensus        10 ~~~~~G~pGsGKsT~a~~L~~   30 (230)
T 3gmt_A           10 RLILLGAPGAGKGTQANFIKE   30 (230)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             ceeeECCCCCCHHHHHHHHHH
Confidence            478999999999999998877

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=97.43  E-value=9.7e-05  Score=45.54  Aligned_cols=22  Identities=9%  Similarity=-0.088  Sum_probs=19.8

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .++++.|.+|+|||||+..+..
T Consensus        57 ~~i~i~G~~g~GKSTl~~~l~~   78 (341)
T 2p67_A           57 LRLGVTGTPGAGKSTFLEAFGM   78 (341)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHH
Confidence            5789999999999999999864

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=97.42  E-value=9.8e-05  Score=48.87  Aligned_cols=23  Identities=17%  Similarity=0.130  Sum_probs=21.0

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .+++|.|++|+|||||++.++.-
T Consensus       383 ei~~i~G~NGsGKSTLlk~l~Gl  405 (607)
T 3bk7_A          383 EVIGIVGPNGIGKTTFVKMLAGV  405 (607)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            48899999999999999999873

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=97.42  E-value=0.0001  Score=40.75  Aligned_cols=22  Identities=9%  Similarity=0.061  Sum_probs=19.4

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.++|.+|+|||||...+...
T Consensus        14 ki~v~G~~~~GKSsli~~l~~~   35 (181)
T 2efe_B           14 KLVLLGDVGAGKSSLVLRFVKD   35 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            4789999999999999998764

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=97.42  E-value=8.9e-05  Score=41.00  Aligned_cols=22  Identities=14%  Similarity=0.057  Sum_probs=19.4

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.++|.+|+|||||...+...
T Consensus        10 ki~v~G~~~~GKssl~~~~~~~   31 (182)
T 3bwd_D           10 KCVTVGDGAVGKTCLLISYTSN   31 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999998764

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=97.42  E-value=9e-05  Score=40.92  Aligned_cols=22  Identities=14%  Similarity=0.095  Sum_probs=19.4

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.+.|.+|+|||||...+...
T Consensus        12 ~i~v~G~~~~GKssli~~l~~~   33 (180)
T 2g6b_A           12 KVMLVGDSGVGKTCLLVRFKDG   33 (180)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            4789999999999999998764

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.42  E-value=8.7e-05  Score=47.12  Aligned_cols=21  Identities=10%  Similarity=0.218  Sum_probs=19.2

Q ss_pred             eeEEcCCCCcHHHHHHHHhcC
Q 037564            5 KPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      |+|+|.+|+|||||.+.++..
T Consensus        34 I~lvG~sGaGKSTLln~L~g~   54 (418)
T 2qag_C           34 LMVVGESGLGKSTLINSLFLT   54 (418)
T ss_dssp             EEEECCTTSSHHHHHHHHTTC
T ss_pred             EEEECCCCCcHHHHHHHHhCC
Confidence            689999999999999998864

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=97.42  E-value=9e-05  Score=47.28  Aligned_cols=22  Identities=9%  Similarity=0.033  Sum_probs=20.4

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ..++|.|++|+|||||++.+..
T Consensus       158 q~~~IvG~sGsGKSTLl~~Iag  179 (438)
T 2dpy_A          158 QRMGLFAGSGVGKSVLLGMMAR  179 (438)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            4789999999999999999987

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=97.42  E-value=0.0001  Score=47.89  Aligned_cols=20  Identities=20%  Similarity=0.184  Sum_probs=18.4

Q ss_pred             ceeeEEcCCCCcHHHHHHHH
Q 037564            3 GCKPILDSSSFDKTAFTADT   22 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~   22 (93)
                      .+++|.|++|+|||||++.+
T Consensus        40 e~~~l~G~nGsGKSTL~~~~   59 (525)
T 1tf7_A           40 RSTLVSGTSGTGKTLFSIQF   59 (525)
T ss_dssp             SEEEEEESTTSSHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHH
Confidence            57899999999999999984

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=97.42  E-value=0.00011  Score=41.51  Aligned_cols=22  Identities=14%  Similarity=0.145  Sum_probs=19.0

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.++|.+|+|||||...+...
T Consensus        22 ki~~~G~~~~GKssl~~~l~~~   43 (201)
T 2q3h_A           22 KCVLVGDGAVGKTSLVVSYTTN   43 (201)
T ss_dssp             EEEEECSTTSSHHHHHHHHHC-
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999998864

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=97.42  E-value=9.7e-05  Score=48.51  Aligned_cols=22  Identities=9%  Similarity=0.006  Sum_probs=20.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|+|++|+|||||++.+..
T Consensus       370 ~~~~ivG~sGsGKSTll~~l~g  391 (582)
T 3b5x_A          370 KTVALVGRSGSGKSTIANLFTR  391 (582)
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            4789999999999999999876

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.42  E-value=6.5e-05  Score=41.66  Aligned_cols=22  Identities=18%  Similarity=-0.055  Sum_probs=19.5

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.+.|.+|+|||||...+...
T Consensus        20 ~i~v~G~~~~GKssli~~l~~~   41 (183)
T 1moz_A           20 RILILGLDGAGKTTILYRLQIG   41 (183)
T ss_dssp             EEEEEEETTSSHHHHHHHTCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999998753

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=97.42  E-value=0.0001  Score=48.82  Aligned_cols=22  Identities=9%  Similarity=-0.009  Sum_probs=20.3

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|.|++|+|||||++.+..
T Consensus       379 Eiv~iiG~NGsGKSTLlk~l~G  400 (608)
T 3j16_B          379 EILVMMGENGTGKTTLIKLLAG  400 (608)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHT
T ss_pred             eEEEEECCCCCcHHHHHHHHhc
Confidence            4789999999999999999987

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=97.41  E-value=9e-05  Score=41.91  Aligned_cols=22  Identities=27%  Similarity=0.225  Sum_probs=19.5

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.|+|.+|+|||||...+...
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~   31 (207)
T 1vg8_A           10 KVIILGDSGVGKTSLMNQYVNK   31 (207)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            4789999999999999998764

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=97.41  E-value=9.6e-05  Score=41.49  Aligned_cols=23  Identities=9%  Similarity=-0.122  Sum_probs=20.5

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .-|.++|.+|+|||||...+...
T Consensus        18 ~ki~v~G~~~~GKSsl~~~l~~~   40 (199)
T 4bas_A           18 LQVVMCGLDNSGKTTIINQVKPA   40 (199)
T ss_dssp             EEEEEECCTTSCHHHHHHHHSCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhcC
Confidence            35889999999999999998875

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=97.41  E-value=0.0001  Score=48.79  Aligned_cols=22  Identities=5%  Similarity=-0.023  Sum_probs=20.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|.|++|+|||||.+.+..
T Consensus       104 ei~~LvGpNGaGKSTLLkiL~G  125 (608)
T 3j16_B          104 QVLGLVGTNGIGKSTALKILAG  125 (608)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCChHHHHHHHHhc
Confidence            4889999999999999999876

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=97.41  E-value=8.8e-05  Score=42.37  Aligned_cols=22  Identities=18%  Similarity=0.066  Sum_probs=19.6

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.++|.+|+|||||...+...
T Consensus        30 ki~vvG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           30 KIVVVGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999864

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=97.41  E-value=0.0001  Score=41.54  Aligned_cols=22  Identities=18%  Similarity=0.157  Sum_probs=19.4

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.+.|.+|+|||||...+...
T Consensus        16 ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           16 KVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999998764

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=97.41  E-value=9e-05  Score=42.25  Aligned_cols=22  Identities=9%  Similarity=0.092  Sum_probs=19.3

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|+++|.+|+|||||...+...
T Consensus        28 ki~lvG~~~vGKSsLi~~l~~~   49 (201)
T 2ew1_A           28 KIVLIGNAGVGKTCLVRRFTQG   49 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            4789999999999999998753

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=97.41  E-value=0.00013  Score=39.99  Aligned_cols=21  Identities=14%  Similarity=0.240  Sum_probs=18.5

Q ss_pred             ceeeEEcCCCCcHHHHHHHHh
Q 037564            3 GCKPILDSSSFDKTAFTADTY   23 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~   23 (93)
                      ++..|+|+.|.||||+...++
T Consensus        24 g~~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           24 GINLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHH
Confidence            578899999999999988864

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=97.41  E-value=0.00011  Score=41.64  Aligned_cols=22  Identities=14%  Similarity=0.108  Sum_probs=19.0

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.+.|.+|+|||||...+...
T Consensus        27 ki~v~G~~~~GKSsLi~~l~~~   48 (200)
T 2o52_A           27 KFLVIGSAGTGKSCLLHQFIEN   48 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHC-
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            4788999999999999998764

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=97.40  E-value=9.2e-05  Score=41.62  Aligned_cols=22  Identities=9%  Similarity=0.131  Sum_probs=19.5

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|+++|.+|+|||||...+...
T Consensus        25 ki~vvG~~~~GKSsli~~l~~~   46 (192)
T 2fg5_A           25 KVCLLGDTGVGKSSIVCRFVQD   46 (192)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            4789999999999999998764

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=97.40  E-value=9.7e-05  Score=44.88  Aligned_cols=24  Identities=17%  Similarity=0.264  Sum_probs=21.2

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhcC
Q 037564            2 SGCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      ++.|+|+|.+|+|||||...+...
T Consensus         7 ~g~V~ivG~~nvGKSTLln~l~g~   30 (301)
T 1wf3_A            7 SGFVAIVGKPNVGKSTLLNNLLGV   30 (301)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            357899999999999999998874

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=97.40  E-value=9.3e-05  Score=41.89  Aligned_cols=22  Identities=18%  Similarity=0.116  Sum_probs=19.7

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.++|.+|+|||||...+...
T Consensus        26 ki~vvG~~~~GKSsli~~l~~~   47 (201)
T 3oes_A           26 KVVILGYRCVGKTSLAHQFVEG   47 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999998864

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=97.40  E-value=9.7e-05  Score=41.64  Aligned_cols=22  Identities=9%  Similarity=-0.097  Sum_probs=19.5

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.+.|.+|+|||||...+...
T Consensus        31 ki~v~G~~~vGKSsLi~~l~~~   52 (192)
T 2b6h_A           31 RILMVGLDAAGKTTILYKLKLG   52 (192)
T ss_dssp             EEEEEESTTSSHHHHHHHHCSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999999764

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=97.40  E-value=8.3e-05  Score=48.32  Aligned_cols=22  Identities=5%  Similarity=-0.025  Sum_probs=20.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+|.+.|++|+||||+|+.+..
T Consensus       396 ~~I~l~GlsGsGKSTIa~~La~  417 (511)
T 1g8f_A          396 FSIVLGNSLTVSREQLSIALLS  417 (511)
T ss_dssp             EEEEECTTCCSCHHHHHHHHHH
T ss_pred             eEEEecccCCCCHHHHHHHHHH
Confidence            4788999999999999999988

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=97.40  E-value=9.6e-05  Score=41.46  Aligned_cols=22  Identities=27%  Similarity=0.235  Sum_probs=19.3

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.+.|.+|+|||||...+...
T Consensus        25 ki~v~G~~~~GKSsli~~l~~~   46 (191)
T 3dz8_A           25 KLLIIGNSSVGKTSFLFRYADD   46 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHhcC
Confidence            3789999999999999998863

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=97.40  E-value=0.00012  Score=40.95  Aligned_cols=22  Identities=18%  Similarity=-0.026  Sum_probs=19.6

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.++|.+|+|||||...+...
T Consensus        18 ~i~v~G~~~~GKssl~~~l~~~   39 (187)
T 1zj6_A           18 KVIIVGLDNAGKTTILYQFSMN   39 (187)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999999853

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=97.40  E-value=9.7e-05  Score=42.11  Aligned_cols=22  Identities=9%  Similarity=-0.014  Sum_probs=19.7

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .|.+.|.+|+|||||...+...
T Consensus         9 ki~vvG~~~~GKTsli~~l~~~   30 (214)
T 2fh5_B            9 AVLFVGLCDSGKTLLFVRLLTG   30 (214)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999998864

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=97.40  E-value=0.0001  Score=41.32  Aligned_cols=22  Identities=9%  Similarity=0.096  Sum_probs=19.7

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.++|.+|+|||||...+...
T Consensus        18 ki~v~G~~~~GKSsli~~l~~~   39 (196)
T 3tkl_A           18 KLLLIGDSGVGKSCLLLRFADD   39 (196)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            4789999999999999998874

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=97.39  E-value=0.00011  Score=42.50  Aligned_cols=23  Identities=9%  Similarity=0.050  Sum_probs=20.4

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .-|.++|.+|+|||||...+...
T Consensus        30 ~kI~vvG~~~vGKSsLin~l~~~   52 (228)
T 2qu8_A           30 KTIILSGAPNVGKSSFMNIVSRA   52 (228)
T ss_dssp             EEEEEECSTTSSHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            35789999999999999999875

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=97.39  E-value=0.0001  Score=41.28  Aligned_cols=22  Identities=14%  Similarity=0.030  Sum_probs=19.5

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.++|.+|+|||||...+...
T Consensus        24 ki~v~G~~~~GKSsli~~l~~~   45 (188)
T 1zd9_A           24 ELTLVGLQYSGKTTFVNVIASG   45 (188)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999999864

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=97.39  E-value=0.00011  Score=41.40  Aligned_cols=22  Identities=18%  Similarity=0.169  Sum_probs=19.1

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.+.|.+|+|||||...+...
T Consensus        28 ki~vvG~~~~GKSsLi~~l~~~   49 (192)
T 2il1_A           28 QVIIIGSRGVGKTSLMERFTDD   49 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHCC-
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3789999999999999998864

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=97.39  E-value=0.00012  Score=42.00  Aligned_cols=22  Identities=9%  Similarity=0.019  Sum_probs=19.1

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.++|.+|+|||||...+...
T Consensus        36 ki~vvG~~~vGKSsli~~l~~~   57 (214)
T 2j1l_A           36 KVVLVGDGGCGKTSLLMVFADG   57 (214)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC-
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            4789999999999999999864

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=97.39  E-value=0.00075  Score=39.29  Aligned_cols=90  Identities=10%  Similarity=0.009  Sum_probs=45.1

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCccc-ccCCC-eeEEEEeCCCCCHHHHHHHHHHhhCCCCCC---------------cc
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHV-KFYFD-CHAWVRVSISYDFRMVLDDIIKSVMPPSRV---------------SV   65 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~-~~~f~-~~~wv~~~~~~~~~~ll~~il~~l~~~~~~---------------~~   65 (93)
                      +.+.+.|+.|+||||+.....-+... ..... ..+.+.........++.+.+...+......               ..
T Consensus        77 ~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  156 (235)
T 3llm_A           77 SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHA  156 (235)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEEECCCSSS
T ss_pred             CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeechhhccCCCCC
Confidence            57889999999999866654332111 11111 222222232223344445555444322100               00


Q ss_pred             ccC-CCHHHHHHHHHHhcCCCeEEEEeeC
Q 037564           66 IIG-EDYQLKKSILRDYLTNKKYFIVLDD   93 (93)
Q Consensus        66 ~~~-~~~~~l~~~l~~~L~~kr~LlVlDD   93 (93)
                      .+- .+...+.+.+...+.+-+ ++|+|.
T Consensus       157 ~Ivv~Tpg~l~~~l~~~l~~~~-~lVlDE  184 (235)
T 3llm_A          157 SIMFCTVGVLLRKLEAGIRGIS-HVIVDE  184 (235)
T ss_dssp             EEEEEEHHHHHHHHHHCCTTCC-EEEECC
T ss_pred             eEEEECHHHHHHHHHhhhcCCc-EEEEEC
Confidence            122 466777777776665555 566664

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=97.38  E-value=0.0001  Score=41.36  Aligned_cols=22  Identities=9%  Similarity=0.048  Sum_probs=19.6

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.++|.+|+|||||...+...
T Consensus        25 ki~~vG~~~~GKSsl~~~l~~~   46 (194)
T 3reg_A           25 KIVVVGDGAVGKTCLLLAFSKG   46 (194)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            4789999999999999998874

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=97.38  E-value=0.00011  Score=41.18  Aligned_cols=22  Identities=23%  Similarity=0.217  Sum_probs=19.5

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.++|.+|+|||||...+...
T Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (189)
T 2gf9_A           24 KLLLIGNSSVGKTSFLFRYADD   45 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999998764

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=97.38  E-value=0.00011  Score=48.62  Aligned_cols=22  Identities=14%  Similarity=-0.067  Sum_probs=20.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|.|++|+|||||.+.+..
T Consensus       118 e~~~LiG~NGsGKSTLlkiL~G  139 (607)
T 3bk7_A          118 MVVGIVGPNGTGKTTAVKILAG  139 (607)
T ss_dssp             SEEEEECCTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCChHHHHHHHHhC
Confidence            4789999999999999999876

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=97.38  E-value=0.00012  Score=47.62  Aligned_cols=22  Identities=9%  Similarity=-0.055  Sum_probs=19.9

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ..++|.|+.|+||||+++.+..
T Consensus       261 ~~i~I~GptGSGKTTlL~aL~~  282 (511)
T 2oap_1          261 FSAIVVGETASGKTTTLNAIMM  282 (511)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGG
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            3689999999999999999887

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=97.38  E-value=0.00011  Score=41.25  Aligned_cols=22  Identities=9%  Similarity=0.101  Sum_probs=19.4

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.++|.+|+|||||...+...
T Consensus        23 ki~v~G~~~~GKSsli~~l~~~   44 (191)
T 2a5j_A           23 KYIIIGDTGVGKSCLLLQFTDK   44 (191)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            4789999999999999998764

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=97.38  E-value=0.0001  Score=41.35  Aligned_cols=22  Identities=5%  Similarity=0.090  Sum_probs=19.5

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.++|.+|+|||||...+...
T Consensus        10 ki~vvG~~~~GKSsli~~l~~~   31 (199)
T 2gf0_A           10 RVVVFGAGGVGKSSLVLRFVKG   31 (199)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCcHHHHHHHHHcC
Confidence            4789999999999999998763

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=97.37  E-value=0.00011  Score=41.12  Aligned_cols=22  Identities=18%  Similarity=0.122  Sum_probs=19.4

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.++|.+|+|||||...+...
T Consensus        22 ki~v~G~~~~GKSsli~~l~~~   43 (189)
T 1z06_A           22 KIIVIGDSNVGKTCLTYRFCAG   43 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999998754

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=97.37  E-value=0.00013  Score=42.08  Aligned_cols=21  Identities=5%  Similarity=0.015  Sum_probs=18.8

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      -|.|+|.+|+|||||...+..
T Consensus        39 kVvlvG~~~vGKSSLl~r~~~   59 (211)
T 2g3y_A           39 RVVLIGEQGVGKSTLANIFAG   59 (211)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            378999999999999999874

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=97.36  E-value=0.00011  Score=41.45  Aligned_cols=22  Identities=14%  Similarity=0.172  Sum_probs=19.5

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.+.|.+|+|||||...+...
T Consensus        30 ki~v~G~~~~GKSsli~~l~~~   51 (199)
T 2p5s_A           30 KIVLAGDAAVGKSSFLMRLCKN   51 (199)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            4789999999999999998764

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=97.36  E-value=0.00012  Score=40.96  Aligned_cols=22  Identities=14%  Similarity=0.123  Sum_probs=19.6

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.++|.+|+|||||...+...
T Consensus        17 ~i~v~G~~~~GKssli~~l~~~   38 (195)
T 1x3s_A           17 KILIIGESGVGKSSLLLRFTDD   38 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999998764

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=97.36  E-value=0.00012  Score=43.56  Aligned_cols=23  Identities=9%  Similarity=0.043  Sum_probs=20.5

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      ..|++.|.+|+|||||...+...
T Consensus         4 ~~i~lvG~~g~GKTTL~n~l~g~   26 (271)
T 3k53_A            4 KTVALVGNPNVGKTTIFNALTGL   26 (271)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHhCC
Confidence            46899999999999999998874

>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=97.36  E-value=0.00036  Score=42.70  Aligned_cols=22  Identities=23%  Similarity=0.027  Sum_probs=18.0

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +++...|-||+||||+|..+..
T Consensus        15 ~i~v~sgKGGvGKTTvA~~LA~   36 (324)
T 3zq6_A           15 TFVFIGGKGGVGKTTISAATAL   36 (324)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCchHHHHHHHHHH
Confidence            4566679999999999988765

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=97.36  E-value=0.00011  Score=41.19  Aligned_cols=22  Identities=14%  Similarity=-0.031  Sum_probs=19.7

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.+.|.+|+|||||...+...
T Consensus        23 ki~v~G~~~~GKSsli~~l~~~   44 (190)
T 2h57_A           23 HVLCLGLDNSGKTTIINKLKPS   44 (190)
T ss_dssp             EEEEEECTTSSHHHHHHHTSCG
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999998864

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=97.35  E-value=0.00011  Score=40.82  Aligned_cols=22  Identities=18%  Similarity=-0.026  Sum_probs=19.6

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.++|.+|+|||||...+...
T Consensus        23 ~i~v~G~~~~GKSsli~~l~~~   44 (181)
T 2h17_A           23 KVIIVGLDNAGKTTILYQFSMN   44 (181)
T ss_dssp             EEEEEEETTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999864

>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*

Probab=97.34  E-value=0.00038  Score=42.96  Aligned_cols=22  Identities=9%  Similarity=-0.114  Sum_probs=18.8

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +++.+.|-||+||||+|..+..
T Consensus        17 ~i~~~sgkGGvGKTt~a~~lA~   38 (334)
T 3iqw_A           17 RWIFVGGKGGVGKTTTSCSLAI   38 (334)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCccHHHHHHHHHH
Confidence            5677889999999999988765

>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*

Probab=97.34  E-value=0.00036  Score=40.93  Aligned_cols=39  Identities=8%  Similarity=-0.053  Sum_probs=25.4

Q ss_pred             CCceeeEE-cCCCCcHHHHHHHHhcCcccccCCCeeEEEEeC
Q 037564            1 FSGCKPIL-DSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVS   41 (93)
Q Consensus         1 ~~~~i~i~-G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~   41 (93)
                      |+++|+|+ +-||+||||+|..+..  .+...=..+..+...
T Consensus         1 M~~vi~v~s~kgGvGKTt~a~~LA~--~la~~g~~VlliD~D   40 (260)
T 3q9l_A            1 MARIIVVTSGKGGVGKTTSSAAIAT--GLAQKGKKTVVIDFA   40 (260)
T ss_dssp             -CEEEEEECSSTTSSHHHHHHHHHH--HHHHTTCCEEEEECC
T ss_pred             CCeEEEEECCCCCCcHHHHHHHHHH--HHHhCCCcEEEEECC
Confidence            56788887 5678999999998877  443322234445544

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.34  E-value=4.2e-05  Score=46.71  Aligned_cols=23  Identities=9%  Similarity=0.046  Sum_probs=20.0

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .++++.|++|+|||||.+.+...
T Consensus       174 ~~~~lvG~sG~GKSTLln~L~g~  196 (307)
T 1t9h_A          174 KTTVFAGQSGVGKSSLLNAISPE  196 (307)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC-
T ss_pred             CEEEEECCCCCCHHHHHHHhccc
Confidence            47899999999999999998763

>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}

Probab=97.33  E-value=0.00035  Score=43.36  Aligned_cols=22  Identities=9%  Similarity=-0.078  Sum_probs=18.9

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +++.+.|.||+||||+|..+..
T Consensus        19 ~i~~~~gkGGvGKTt~a~~lA~   40 (348)
T 3io3_A           19 KWIFVGGKGGVGKTTTSSSVAV   40 (348)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCCcHHHHHHHHHH
Confidence            5788889999999998887764

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=97.33  E-value=0.00013  Score=41.39  Aligned_cols=22  Identities=9%  Similarity=0.107  Sum_probs=19.5

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.+.|.+|+|||||...+...
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~   31 (206)
T 2bcg_Y           10 KLLLIGNSGVGKSCLLLRFSDD   31 (206)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999998764

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=97.33  E-value=0.00015  Score=41.35  Aligned_cols=22  Identities=27%  Similarity=0.170  Sum_probs=19.6

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.++|.+|+|||||...+...
T Consensus        27 ki~vvG~~~~GKSsLi~~l~~~   48 (217)
T 2f7s_A           27 KLLALGDSGVGKTTFLYRYTDN   48 (217)
T ss_dssp             EEEEESCTTSSHHHHHHHHHCS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            4788999999999999998864

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=97.32  E-value=0.00016  Score=40.91  Aligned_cols=22  Identities=9%  Similarity=0.055  Sum_probs=19.4

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +-+.|.|.+|+||||||..+..
T Consensus        17 ~gvli~G~SGaGKStlal~L~~   38 (181)
T 3tqf_A           17 MGVLITGEANIGKSELSLALID   38 (181)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHH
Confidence            4578899999999999998876

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=97.32  E-value=0.00013  Score=40.88  Aligned_cols=22  Identities=14%  Similarity=0.129  Sum_probs=19.6

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.+.|.+|+|||||...+...
T Consensus        20 ki~v~G~~~~GKssli~~l~~~   41 (194)
T 2atx_A           20 KCVVVGDGAVGKTCLLMSYAND   41 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4788999999999999998864

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=97.32  E-value=0.00011  Score=48.40  Aligned_cols=22  Identities=9%  Similarity=0.016  Sum_probs=20.3

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|+|++|+|||||++.+..
T Consensus       382 ~~~~ivG~sGsGKSTll~~l~g  403 (598)
T 3qf4_B          382 QKVALVGPTGSGKTTIVNLLMR  403 (598)
T ss_dssp             CEEEEECCTTSSTTHHHHHHTT
T ss_pred             CEEEEECCCCCcHHHHHHHHhc
Confidence            5789999999999999999886

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=97.32  E-value=9.7e-05  Score=49.81  Aligned_cols=21  Identities=14%  Similarity=0.156  Sum_probs=19.0

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      -+.++|++|+|||++|+.+++
T Consensus       203 ~vLL~G~pGtGKT~la~~la~  223 (758)
T 3pxi_A          203 NPVLIGEPGVGKTAIAEGLAQ  223 (758)
T ss_dssp             EEEEESCTTTTTHHHHHHHHH
T ss_pred             CeEEECCCCCCHHHHHHHHHH
Confidence            467899999999999999887

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=97.32  E-value=0.00014  Score=42.10  Aligned_cols=21  Identities=19%  Similarity=0.175  Sum_probs=18.8

Q ss_pred             eeEEcCCCCcHHHHHHHHhcC
Q 037564            5 KPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      |.|+|.+|+|||+|..++.++
T Consensus        16 ivlvGd~~VGKTsLi~r~~~~   36 (216)
T 4dkx_A           16 LVFLGEQSVGKTSLITRFMYD   36 (216)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECcCCcCHHHHHHHHHhC
Confidence            788999999999999998764

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=97.31  E-value=0.00013  Score=41.44  Aligned_cols=22  Identities=9%  Similarity=0.028  Sum_probs=19.6

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.++|.+|+|||||...+...
T Consensus        27 ki~vvG~~~~GKSsli~~l~~~   48 (207)
T 2fv8_A           27 KLVVVGDGACGKTCLLIVFSKD   48 (207)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            4789999999999999998864

>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A

Probab=97.31  E-value=0.00023  Score=47.18  Aligned_cols=50  Identities=14%  Similarity=0.007  Sum_probs=31.1

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHHH
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDII   54 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~il   54 (93)
                      ++..|+|++|+|||+++..+..  .+...-...+.++.........+...+.
T Consensus       196 ~~~li~GppGTGKT~~~~~~i~--~l~~~~~~~ilv~a~tn~A~~~l~~~l~  245 (624)
T 2gk6_A          196 PLSLIQGPPGTGKTVTSATIVY--HLARQGNGPVLVCAPSNIAVDQLTEKIH  245 (624)
T ss_dssp             SEEEEECCTTSCHHHHHHHHHH--HHHTSSSCCEEEEESSHHHHHHHHHHHH
T ss_pred             CCeEEECCCCCCHHHHHHHHHH--HHHHcCCCeEEEEeCcHHHHHHHHHHHH
Confidence            5678999999999998776655  2222123355555555444455555554

>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}

Probab=97.31  E-value=0.00012  Score=45.89  Aligned_cols=24  Identities=13%  Similarity=0.104  Sum_probs=20.3

Q ss_pred             CCceeeEEcCCCCcHHHHHHHHhc
Q 037564            1 FSGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         1 ~~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      |.+++.+.|-||+||||+|..+..
T Consensus         1 M~~i~~~~gkGG~GKTt~a~~la~   24 (374)
T 3igf_A            1 MALILTFLGKSGVARTKIAIAAAK   24 (374)
T ss_dssp             -CEEEEEECSBHHHHHHHHHHHHH
T ss_pred             CcEEEEEeCCCCCcHHHHHHHHHH
Confidence            467888999999999999988765

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=97.30  E-value=0.00014  Score=41.37  Aligned_cols=22  Identities=14%  Similarity=-0.005  Sum_probs=19.3

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.++|.+|+|||||...+...
T Consensus        11 ki~i~G~~~~GKTsli~~l~~~   32 (212)
T 2j0v_A           11 KCVTVGDGAVGKTCMLICYTSN   32 (212)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999998764

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.30  E-value=0.00017  Score=40.94  Aligned_cols=22  Identities=9%  Similarity=0.113  Sum_probs=19.5

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|+++|.+|+|||||...+...
T Consensus        22 ~i~v~G~~~~GKSsli~~l~~~   43 (213)
T 3cph_A           22 KILLIGDSGVGKSCLLVRFVED   43 (213)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999998854

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=97.30  E-value=7.7e-05  Score=41.41  Aligned_cols=22  Identities=14%  Similarity=0.051  Sum_probs=8.9

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.++|.+|+|||||...+.+.
T Consensus        10 ki~v~G~~~~GKssl~~~l~~~   31 (183)
T 2fu5_C           10 KLLLIGDSGVGKTCVLFRFSED   31 (183)
T ss_dssp             EEEEECCCCC------------
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999988764

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=97.30  E-value=0.00015  Score=41.28  Aligned_cols=22  Identities=14%  Similarity=0.107  Sum_probs=19.3

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.++|.+|+|||||...+...
T Consensus        32 ki~vvG~~~~GKSsLi~~l~~~   53 (204)
T 4gzl_A           32 KCVVVGDGAVGKTCLLISYTTN   53 (204)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            4789999999999999888764

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=97.30  E-value=0.00015  Score=41.20  Aligned_cols=22  Identities=14%  Similarity=0.069  Sum_probs=19.4

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.++|.+|+|||||...+...
T Consensus        31 ki~vvG~~~vGKSsli~~l~~~   52 (201)
T 2hup_A           31 KLVLVGDASVGKTCVVQRFKTG   52 (201)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhhC
Confidence            4789999999999999998764

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=97.29  E-value=0.00017  Score=43.32  Aligned_cols=21  Identities=10%  Similarity=0.055  Sum_probs=19.4

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+.++|++|+|||.+|..+++
T Consensus       106 ~~~l~GppgtGKt~~a~ala~  126 (267)
T 1u0j_A          106 TIWLFGPATTGKTNIAEAIAH  126 (267)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            588999999999999999887

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=97.29  E-value=9.5e-05  Score=48.54  Aligned_cols=22  Identities=9%  Similarity=-0.068  Sum_probs=20.0

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ..++|+|++|+|||||++.+..
T Consensus       368 ~~~~ivG~sGsGKSTll~~l~g  389 (578)
T 4a82_A          368 ETVAFVGMSGGGKSTLINLIPR  389 (578)
T ss_dssp             CEEEEECSTTSSHHHHHTTTTT
T ss_pred             CEEEEECCCCChHHHHHHHHhc
Confidence            4789999999999999998876

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=97.29  E-value=0.00017  Score=42.48  Aligned_cols=23  Identities=9%  Similarity=-0.031  Sum_probs=20.3

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      ..|+|+|.+|+|||||...+...
T Consensus        23 ~~I~lvG~~g~GKStl~n~l~~~   45 (260)
T 2xtp_A           23 LRIILVGKTGTGKSAAGNSILRK   45 (260)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTS
T ss_pred             eEEEEECCCCCCHHHHHHHHhCC
Confidence            35899999999999999999764

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=97.28  E-value=0.00015  Score=41.01  Aligned_cols=22  Identities=14%  Similarity=0.042  Sum_probs=19.5

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.++|.+|+|||||...+...
T Consensus        27 ki~vvG~~~~GKSsli~~l~~~   48 (201)
T 2gco_A           27 KLVIVGDGACGKTCLLIVFSKD   48 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999998864

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=97.28  E-value=0.00016  Score=42.18  Aligned_cols=22  Identities=5%  Similarity=-0.242  Sum_probs=20.3

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+|+|.|+.|+||||+|+.+..
T Consensus        15 ~iI~i~g~~gsGk~~i~~~la~   36 (223)
T 3hdt_A           15 LIITIEREYGSGGRIVGKKLAE   36 (223)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEeCCCCCCHHHHHHHHHH
Confidence            4899999999999999998877

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=97.27  E-value=0.00016  Score=41.44  Aligned_cols=22  Identities=14%  Similarity=0.030  Sum_probs=19.5

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.++|.+|+|||||...+...
T Consensus        29 ki~vvG~~~vGKSsL~~~l~~~   50 (214)
T 3q3j_B           29 KLVLVGDVQCGKTAMLQVLAKD   50 (214)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            4789999999999999998764

>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*

Probab=97.27  E-value=0.0024  Score=42.26  Aligned_cols=47  Identities=13%  Similarity=0.107  Sum_probs=32.8

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCC-CCHHHHHHHH
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSIS-YDFRMVLDDI   53 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~ll~~i   53 (93)
                      .-++|.|.+|+|||+|+..+.+.    .+-+.++++-+.+. ....++++.+
T Consensus       233 qr~~Ifgg~g~GKT~L~~~ia~~----~~~~v~V~~~iGER~~Ev~e~~~~~  280 (600)
T 3vr4_A          233 GAAAVPGPFGAGKTVVQHQIAKW----SDVDLVVYVGCGERGNEMTDVVNEF  280 (600)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH----SSCSEEEEEEEEECHHHHHHHHHHT
T ss_pred             CEEeeecCCCccHHHHHHHHHhc----cCCCEEEEEEecccHHHHHHHHHHH
Confidence            45789999999999999998873    22356777777654 3344444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	93
d2a5yb3	277	c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenor	3e-08

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 46.7 bits (110), Expect = 3e-08
 Identities = 14/88 (15%), Positives = 26/88 (29%), Gaps = 8/88 (9%)

Query: 14  DKTAFTADTYNNNH--VKFYFDCHAWVRVSISYDFRMVLDDIIKSVMPPSRV------SV 65
            K+   +   + +   +   +D   W++ S +             +M  S        SV
Sbjct: 56  GKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSV 115

Query: 66  IIGEDYQLKKSILRDYLTNKKYFIVLDD 93
                  LK+ I    +       V DD
Sbjct: 116 EHVTSVVLKRMICNALIDRPNTLFVFDD 143

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	93
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	99.89
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	99.06
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	98.91
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	98.86
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	98.78
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	98.73
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	98.69
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	98.69
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	98.67
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	98.67
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	98.66
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	98.66
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	98.65
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	98.65
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	98.65
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	98.58
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	98.57
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	98.56
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	98.55
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	98.54
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	98.53
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	98.52
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	98.52
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	98.51
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	98.51
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	98.48
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	98.48
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.47
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	98.46
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	98.46
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	98.45
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	98.45
d1okkd2	207	GTPase domain of the signal recognition particle r	98.44
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	98.44
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	98.41
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	98.4
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	98.4
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	98.39
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	98.39
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	98.39
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.38
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	98.37
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	98.36
d1ls1a2	207	GTPase domain of the signal sequence recognition p	98.35
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	98.34
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	98.34
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	98.34
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	98.32
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	98.32
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	98.31
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.31
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	98.3
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	98.3
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.28
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	98.26
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	98.25
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	98.24
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	98.23
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	98.23
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	98.22
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	98.21
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	98.21
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	98.19
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	98.18
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	98.16
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	98.15
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	98.15
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	98.14
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	98.13
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	98.12
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	98.12
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	98.11
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	98.06
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	98.06
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	98.04
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	98.04
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	98.03
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	98.03
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	98.02
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	98.02
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	98.02
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	98.01
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	98.01
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	98.01
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	98.0
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	98.0
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.98
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	97.96
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	97.96
d1xpua3	289	Transcription termination factor Rho, ATPase domai	97.95
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	97.95
d1g2912	240	Maltose transport protein MalK, N-terminal domain	97.95
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	97.94
d2awna2	232	Maltose transport protein MalK, N-terminal domain	97.93
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	97.93
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	97.93
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	97.91
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	97.91
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	97.91
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	97.91
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	97.9
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	97.89
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	97.89
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	97.87
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	97.87
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	97.87
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	97.86
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	97.85
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	97.84
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	97.83
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	97.83
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	97.82
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	97.82
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	97.81
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	97.8
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	97.8
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	97.8
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	97.79
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	97.78
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.78
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	97.77
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	97.77
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	97.76
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	97.74
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	97.74
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	97.73
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	97.73
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	97.72
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	97.71
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	97.7
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	97.7
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	97.7
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	97.69
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	97.68
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	97.68
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	97.68
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	97.68
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	97.67
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	97.67
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	97.67
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	97.66
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	97.66
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	97.65
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	97.64
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	97.64
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	97.63
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	97.62
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	97.62
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	97.62
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	97.61
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	97.61
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	97.61
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	97.61
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	97.61
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	97.6
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	97.6
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	97.59
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	97.59
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	97.59
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	97.58
d2fh5b1	207	Signal recognition particle receptor beta-subunit	97.57
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	97.57
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	97.57
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.57
d1nrjb_	209	Signal recognition particle receptor beta-subunit	97.56
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	97.56
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	97.56
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	97.56
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	97.56
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	97.54
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	97.54
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	97.53
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	97.53
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	97.52
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	97.52
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	97.52
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	97.51
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	97.5
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	97.5
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	97.5
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	97.5
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	97.49
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	97.49
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	97.49
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	97.48
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.47
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	97.46
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.45
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	97.43
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	97.43
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	97.43
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	97.42
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	97.42
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	97.41
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	97.41
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	97.41
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	97.41
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	97.41
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	97.4
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	97.4
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	97.38
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	97.38
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	97.34
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	97.34
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	97.33
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	97.33
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	97.32
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	97.32
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	97.31
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	97.3
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	97.29
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	97.29
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	97.28
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	97.27
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	97.26
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	97.25
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	97.24
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	97.15
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	97.13
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	97.12
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	97.07
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.05
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	97.01
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	96.99
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	96.95
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	96.91
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	96.9
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	96.89
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	96.87
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	96.85
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	96.84
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	96.79
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	96.79
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	96.69
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	96.69
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	96.37
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	96.34
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	96.32
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	96.3
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	96.18
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	96.16
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	96.12
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	96.03
d1tuea_	205	Replication protein E1 helicase domain {Human papi	96.03
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	95.96
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	95.9
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	95.85
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	95.84
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	95.65
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	95.64
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	95.57
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	95.43
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	95.1
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	94.98
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	94.91
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	94.72
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	94.69
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	94.53
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	94.52
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	94.44
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	94.25
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	94.21
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	94.11
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	94.09
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	93.84
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	93.72
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	93.58
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	93.57
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	93.24
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	92.97
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	92.8
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	92.62
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	92.24
d1w36b1	485	Exodeoxyribonuclease V beta chain (RecB), N-termin	92.15
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	92.03
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	91.74
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	91.46
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	91.32
d2fz4a1	206	DNA repair protein RAD25 {Archaeoglobus fulgidus [	90.27
d1kjwa2	199	Guanylate kinase-like domain of Psd-95 {Rat (Rattu	89.96
d1gm5a3	264	RecG helicase domain {Thermotoga maritima [TaxId:	88.19
d2jfga3	204	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	87.84
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	86.68
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	86.58
d1e8ca3	234	UDP-N-acetylmuramyl tripeptide synthetase MurE {Es	86.44
d1gg4a4	214	UDP-murNac-tripeptide D-alanyl-D-alanine-adding en	86.35
d1j6ua3	207	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	85.76
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	84.47
d1p3da3	215	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	83.63
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	82.25
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	81.6
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	81.1
d1t5la1	413	Nucleotide excision repair enzyme UvrB {Bacillus c	81.06
d1goja_	354	Kinesin {Neurospora crassa [TaxId: 5141]}	80.47

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.89  E-value=3.9e-23  Score=122.82  Aligned_cols=92  Identities=12%  Similarity=0.082  Sum_probs=66.4

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhcCcc--cccCCCeeEEEEeCCCCCHHHHHHHHHH---hhCCCCCCcc--ccC-CCHHH
Q 037564            2 SGCKPILDSSSFDKTAFTADTYNNNH--VKFYFDCHAWVRVSISYDFRMVLDDIIK---SVMPPSRVSV--IIG-EDYQL   73 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~~~~--~~~~f~~~~wv~~~~~~~~~~ll~~il~---~l~~~~~~~~--~~~-~~~~~   73 (93)
                      +++|+|+||||+||||||+++|++..  ...+|++++|+++++..+...+...+..   .+........  ... .+...
T Consensus        44 ~~~v~I~GmgGiGKTtLA~~v~~~~~~~~~~~f~~~~Wv~vs~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (277)
T d2a5yb3          44 SFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVL  123 (277)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTCCHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhhhhhhhhcCceEEEEEecCCCCHHHHHHHHHHHHHHhcchhhcCCccchhhhhHHH
Confidence            46899999999999999999997532  6668999999999998887666555544   3332211111  111 33444


Q ss_pred             HHHHHHHhcCCCeEEEEeeC
Q 037564           74 KKSILRDYLTNKKYFIVLDD   93 (93)
Q Consensus        74 l~~~l~~~L~~kr~LlVlDD   93 (93)
                      ....+.+.+.++|+|+||||
T Consensus       124 ~~~~~~~~L~~kr~LlVLDD  143 (277)
T d2a5yb3         124 KRMICNALIDRPNTLFVFDD  143 (277)
T ss_dssp             HHHHHHHHTTSTTEEEEEEE
T ss_pred             HHHHHHHHhccCCeeEecch
Confidence            55678888999999999997

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.06  E-value=3e-09  Score=61.34  Aligned_cols=85  Identities=18%  Similarity=0.158  Sum_probs=56.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCCCe-eEEEEeCCCCCHHHHHHHHHHhhCCCCCCccccCCCHHHHHHHHHHh
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDC-HAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDY   81 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~-~~wv~~~~~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~   81 (93)
                      +.+.|+|++|+|||++|+.+++  .+...... .+++...........+..+............   .....+...+.+.
T Consensus        44 ~~lll~GppGtGKT~l~~~l~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~  118 (276)
T d1fnna2          44 PRATLLGRPGTGKTVTLRKLWE--LYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRG---LSRDEFLALLVEH  118 (276)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH--HHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSC---CCHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHH--HHhcccCCcEEEecchhhhhhhhhhhhhHHhhhhhhhhhc---cchhHHHHHHHHH
Confidence            5788999999999999999998  55444332 3566666777888888888887764433222   4555565555555


Q ss_pred             c--CCCeEEEEee
Q 037564           82 L--TNKKYFIVLD   92 (93)
Q Consensus        82 L--~~kr~LlVlD   92 (93)
                      +  .......++|
T Consensus       119 ~~~~~~~~~~~~~  131 (276)
T d1fnna2         119 LRERDLYMFLVLD  131 (276)
T ss_dssp             HHHTTCCEEEEEE
T ss_pred             Hhhcccccccchh
Confidence            4  2234444444

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=98.91  E-value=2.9e-09  Score=61.69  Aligned_cols=84  Identities=19%  Similarity=0.112  Sum_probs=54.7

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcCcccccC------CCeeEEEEeCCCCCHHHHHHHHHHhhCCCCCCccccCCCHHHHHHH
Q 037564            4 CKPILDSSSFDKTAFTADTYNNNHVKFY------FDCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIGEDYQLKKSI   77 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~~~~~~~------f~~~~wv~~~~~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~~   77 (93)
                      ++.++|++|+|||++++.+++  .+...      .....++..............+...+........   .........
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  122 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVK--RVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRG---APALDILKA  122 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHH--HHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTT---CCHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHH--HHHhhcccccCCceeeeeccccccchhhHHHHHhhhccccccccc---chHHHHHHH
Confidence            356689999999999999998  43221      1234566777777788888888887765433222   455566666


Q ss_pred             HHHhc--CCCeEEEEee
Q 037564           78 LRDYL--TNKKYFIVLD   92 (93)
Q Consensus        78 l~~~L--~~kr~LlVlD   92 (93)
                      +.+..  .+...++++|
T Consensus       123 l~~~~~~~~~~~~~iid  139 (287)
T d1w5sa2         123 LVDNLYVENHYLLVILD  139 (287)
T ss_dssp             HHHHHHHHTCEEEEEEE
T ss_pred             HHHHHHhccCcccccee
Confidence            65555  3345566665

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.86  E-value=5.6e-10  Score=61.12  Aligned_cols=24  Identities=21%  Similarity=0.231  Sum_probs=22.6

Q ss_pred             CCceeeEEcCCCCcHHHHHHHHhc
Q 037564            1 FSGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         1 ~~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      |++.|.|.|++|+||||||+.+..
T Consensus         6 ~~K~I~i~G~~GsGKTTla~~La~   29 (192)
T d1lw7a2           6 FAKTVAILGGESSGKSVLVNKLAA   29 (192)
T ss_dssp             TCEEEEEECCTTSHHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHH
Confidence            688999999999999999999987

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=98.78  E-value=2.3e-09  Score=58.09  Aligned_cols=24  Identities=8%  Similarity=-0.033  Sum_probs=21.9

Q ss_pred             CCceeeEEcCCCCcHHHHHHHHhc
Q 037564            1 FSGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         1 ~~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      |.++|.|.|++|+||||+|+.+..
T Consensus         1 M~klI~i~G~~GsGKTTva~~L~~   24 (176)
T d2bdta1           1 MKKLYIITGPAGVGKSTTCKRLAA   24 (176)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            567899999999999999999886

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.73  E-value=8.6e-09  Score=59.41  Aligned_cols=23  Identities=13%  Similarity=0.043  Sum_probs=21.2

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ++.+.|+|++|+|||+|++++.+
T Consensus        29 ~~~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          29 APITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCcHHHHHHHHHH
Confidence            56889999999999999999987

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=98.69  E-value=5.4e-09  Score=55.80  Aligned_cols=24  Identities=4%  Similarity=0.058  Sum_probs=21.1

Q ss_pred             CCceeeEEcCCCCcHHHHHHHHhc
Q 037564            1 FSGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         1 ~~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      |-++|.|.|++|+||||+|+.+..
T Consensus         1 MkklIii~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           1 MKKIILTIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999998865

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=6.6e-09  Score=56.66  Aligned_cols=23  Identities=9%  Similarity=0.050  Sum_probs=21.4

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ++.|.|.|++|+|||||++++..
T Consensus         1 ~k~v~ItG~~GtGKTtl~~~i~~   23 (189)
T d2i3ba1           1 ARHVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CCCEEEESCCSSCHHHHHHHHHH
T ss_pred             CcEEEEECCCCCcHHHHHHHHHH
Confidence            57899999999999999999887

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=98.67  E-value=3.7e-09  Score=56.65  Aligned_cols=22  Identities=5%  Similarity=-0.059  Sum_probs=20.4

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +.|.+.|++|+||||+|+.+..
T Consensus         3 k~I~l~G~~GsGKSTvak~La~   24 (169)
T d1kaga_           3 RNIFLVGPMGAGKSTIGRQLAQ   24 (169)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            5788999999999999999988

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=98.67  E-value=6.6e-09  Score=56.21  Aligned_cols=24  Identities=13%  Similarity=-0.056  Sum_probs=21.8

Q ss_pred             CCceeeEEcCCCCcHHHHHHHHhc
Q 037564            1 FSGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         1 ~~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      |-++++|+|.+|+|||||++++.+
T Consensus         1 m~Pvi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           1 MIPLLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHH
Confidence            457899999999999999999986

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=98.66  E-value=1.3e-07  Score=55.32  Aligned_cols=84  Identities=11%  Similarity=0.047  Sum_probs=56.8

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHHHHhhCCCCCCccccC-CCHHHHHHHHHH
Q 037564            2 SGCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIG-EDYQLKKSILRD   80 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~il~~l~~~~~~~~~~~-~~~~~l~~~l~~   80 (93)
                      .+++-|.|++|+|||+||-+++..  .+..=..++|+.....+++.     ++++++.....-.-.+ .+.++..+.+..
T Consensus        57 g~itei~G~~~sGKT~l~l~~~~~--aqk~g~~v~yiDtE~~~~~~-----~a~~~Gvd~d~i~~~~~~~~E~~~~~~~~  129 (268)
T d1xp8a1          57 GRITEIYGPESGGKTTLALAIVAQ--AQKAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMEL  129 (268)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred             ceEEEEecCCccchHHHHHHHHHH--HHhCCCEEEEEECCccCCHH-----HHHHhCCCchhEEEEcCCCHHHHHHHHHH
Confidence            368889999999999999998873  33322457899888888874     4566664322211122 567777777766


Q ss_pred             hcCC-CeEEEEee
Q 037564           81 YLTN-KKYFIVLD   92 (93)
Q Consensus        81 ~L~~-kr~LlVlD   92 (93)
                      ++.. ..-|+|+|
T Consensus       130 l~~~~~~~liIiD  142 (268)
T d1xp8a1         130 LVRSGAIDVVVVD  142 (268)
T ss_dssp             HHTTTCCSEEEEE
T ss_pred             HHhcCCCcEEEEe
Confidence            6644 45588888

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=3.6e-09  Score=58.50  Aligned_cols=34  Identities=9%  Similarity=-0.284  Sum_probs=25.5

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEE
Q 037564            2 SGCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAW   37 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~w   37 (93)
                      +.+|.++|++|+||||+|+.+..  ++...+....+
T Consensus        19 g~vI~L~G~pGSGKTTiAk~La~--~l~~~~~~~~~   52 (195)
T d1x6va3          19 GCTVWLTGLSGAGKTTVSMALEE--YLVCHGIPCYT   52 (195)
T ss_dssp             CEEEEEESSCHHHHHHHHHHHHH--HHHHTTCCEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH--HHHhcCCCccc
Confidence            35788999999999999999987  55444433333

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=98.65  E-value=5.7e-09  Score=56.77  Aligned_cols=26  Identities=8%  Similarity=-0.180  Sum_probs=22.4

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCccccc
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKF   30 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~   30 (93)
                      .+|.+.|++|+||||+|+.+..  ++..
T Consensus         7 ~~I~l~G~~GsGKTTia~~La~--~L~~   32 (183)
T d1m8pa3           7 FTIFLTGYMNSGKDAIARALQV--TLNQ   32 (183)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH--HHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH--HHhh
Confidence            4788999999999999999988  5543

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=98.65  E-value=7.2e-09  Score=56.25  Aligned_cols=24  Identities=13%  Similarity=-0.060  Sum_probs=21.9

Q ss_pred             CCceeeEEcCCCCcHHHHHHHHhc
Q 037564            1 FSGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         1 ~~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|.|.|++|+||||+|+.+.+
T Consensus         2 ~~kiI~l~G~~GsGKsTva~~L~~   25 (178)
T d1qhxa_           2 TTRMIILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            357999999999999999999888

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.65  E-value=2.3e-07  Score=54.22  Aligned_cols=85  Identities=12%  Similarity=0.061  Sum_probs=56.9

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHHHHhhCCCCCCccccC-CCHHHHHHHHHH
Q 037564            2 SGCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIG-EDYQLKKSILRD   80 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~il~~l~~~~~~~~~~~-~~~~~l~~~l~~   80 (93)
                      .+++-+.|++|+||||+|-+++.  ..+..-..++|+.....++.+.     +++++.....-.-.+ .+.++..+.+..
T Consensus        60 g~i~e~~G~~~~GKT~l~l~~~~--~~q~~g~~~vyIDtE~~~~~e~-----a~~~GvD~d~il~~~~~~~E~~~~~~~~  132 (269)
T d1mo6a1          60 GRVIEIYGPESSGKTTVALHAVA--NAQAAGGVAAFIDAEHALDPDY-----AKKLGVDTDSLLVSQPDTGEQALEIADM  132 (269)
T ss_dssp             SSEEEEECSSSSSHHHHHHHHHH--HHHHTTCEEEEEESSCCCCHHH-----HHHHTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred             ceeEEEecCCCcHHHHHHHHHHH--HHhcCCCEEEEEECCccCCHHH-----HHHhCCCHHHeEEecCCCHHHHHHHHHH
Confidence            46888999999999999988877  3333334678999888888654     455553322111222 566777776666


Q ss_pred             hcC-CCeEEEEeeC
Q 037564           81 YLT-NKKYFIVLDD   93 (93)
Q Consensus        81 ~L~-~kr~LlVlDD   93 (93)
                      .+. ++..|+|+|.
T Consensus       133 l~~~~~~~liIiDS  146 (269)
T d1mo6a1         133 LIRSGALDIVVIDS  146 (269)
T ss_dssp             HHHTTCEEEEEEEC
T ss_pred             HHhcCCCCEEEEec
Confidence            554 4567888984

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=98.58  E-value=1.1e-08  Score=55.93  Aligned_cols=24  Identities=4%  Similarity=-0.027  Sum_probs=21.8

Q ss_pred             CCceeeEEcCCCCcHHHHHHHHhc
Q 037564            1 FSGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         1 ~~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      |+..|.+.|++|+||||+|+.++.
T Consensus         1 M~~~Iil~G~~GsGKSTia~~LA~   24 (170)
T d1e6ca_           1 MTEPIFMVGARGCGMTTVGRELAR   24 (170)
T ss_dssp             CCCCEEEESCTTSSHHHHHHHHHH
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHH
Confidence            567788999999999999999987

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.57  E-value=3.2e-08  Score=56.77  Aligned_cols=22  Identities=9%  Similarity=0.006  Sum_probs=20.3

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +.+.++|++|+||||+|+.+++
T Consensus        53 ~~lll~GPpG~GKTt~a~~la~   74 (253)
T d1sxja2          53 RAAMLYGPPGIGKTTAAHLVAQ   74 (253)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            4688999999999999999998

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=98.56  E-value=1.1e-07  Score=55.18  Aligned_cols=23  Identities=9%  Similarity=0.014  Sum_probs=20.6

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ++-+.++|++|+|||++|+.+++
T Consensus        45 ~~~iLL~GppGtGKT~la~~iA~   67 (256)
T d1lv7a_          45 PKGVLMVGPPGTGKTLLAKAIAG   67 (256)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEeeCCCCCCccHHHHHHHH
Confidence            35578999999999999999998

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=98.55  E-value=2e-08  Score=54.84  Aligned_cols=23  Identities=4%  Similarity=-0.019  Sum_probs=21.3

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +++|+|.|++|+||||+++.+..
T Consensus         1 ~kiI~i~G~~GsGKsT~~~~L~~   23 (190)
T d1khta_           1 NKVVVVTGVPGVGSTTSSQLAMD   23 (190)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            57999999999999999999877

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=98.54  E-value=1.9e-08  Score=54.40  Aligned_cols=21  Identities=10%  Similarity=0.079  Sum_probs=18.9

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .|.|.|++|+||||+|+.+..
T Consensus         6 ~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           6 NILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            467999999999999999877

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.53  E-value=3e-08  Score=53.78  Aligned_cols=23  Identities=9%  Similarity=0.016  Sum_probs=21.1

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .++|.|.|++|+||||+|+.+..
T Consensus         4 g~iI~l~G~~GsGKSTia~~La~   26 (176)
T d1zp6a1           4 GNILLLSGHPGSGKSTIAEALAN   26 (176)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999977

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.52  E-value=3.4e-08  Score=54.44  Aligned_cols=27  Identities=15%  Similarity=-0.071  Sum_probs=22.4

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcCcccccCC
Q 037564            4 CKPILDSSSFDKTAFTADTYNNNHVKFYF   32 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~~~~~~~f   32 (93)
                      +|+|.|.+|+||||||+.+..  ......
T Consensus        24 iIgI~G~~GSGKSTla~~L~~--~l~~~~   50 (198)
T d1rz3a_          24 VLGIDGLSRSGKTTLANQLSQ--TLREQG   50 (198)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH--HHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHH--Hhcccc
Confidence            789999999999999999987  444433

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.52  E-value=2.1e-08  Score=54.50  Aligned_cols=21  Identities=5%  Similarity=-0.040  Sum_probs=18.1

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      -|.+.||+|+||||+++.++.
T Consensus         3 ~IvliG~~G~GKSTig~~La~   23 (165)
T d2iyva1           3 KAVLVGLPGSGKSTIGRRLAK   23 (165)
T ss_dssp             SEEEECSTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            345669999999999999987

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.51  E-value=1.4e-07  Score=53.43  Aligned_cols=34  Identities=18%  Similarity=-0.109  Sum_probs=26.4

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEE
Q 037564            4 CKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVR   39 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~   39 (93)
                      .+.|+|++|+|||.|++.+++  +........+|++
T Consensus        38 ~l~l~G~~G~GKTHLl~A~~~--~~~~~~~~~~~~~   71 (213)
T d1l8qa2          38 PIFIYGSVGTGKTHLLQAAGN--EAKKRGYRVIYSS   71 (213)
T ss_dssp             SEEEECSSSSSHHHHHHHHHH--HHHHTTCCEEEEE
T ss_pred             cEEEECCCCCcHHHHHHHHHH--HhccCccceEEec
Confidence            378999999999999999999  5555444555654

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=98.51  E-value=4.4e-07  Score=52.87  Aligned_cols=84  Identities=13%  Similarity=0.006  Sum_probs=54.5

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHHHHhhCCCCCCccccC-CCHHHHHHHHHH
Q 037564            2 SGCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIG-EDYQLKKSILRD   80 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~il~~l~~~~~~~~~~~-~~~~~l~~~l~~   80 (93)
                      .+++-|+|++|+||||||-+++..  .+..=..++|+.....++...     ++.++.....-.-.+ .+.++..+.+..
T Consensus        54 g~itei~G~~gsGKTtl~l~~~~~--~q~~g~~~vyidtE~~~~~~~-----a~~~Gvd~d~v~~~~~~~~E~~~~~i~~  126 (263)
T d1u94a1          54 GRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDA  126 (263)
T ss_dssp             TSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred             ceEEEEecCCCcHHHHHHHHHHHH--HHcCCCEEEEEccccccCHHH-----HHHhCCCHHHEEEecCCCHHHHHHHHHH
Confidence            368889999999999999998883  333334578888888887643     455554321111112 556666666666


Q ss_pred             hcC-CCeEEEEee
Q 037564           81 YLT-NKKYFIVLD   92 (93)
Q Consensus        81 ~L~-~kr~LlVlD   92 (93)
                      ..+ +..-|+|+|
T Consensus       127 l~~~~~~~liViD  139 (263)
T d1u94a1         127 LARSGAVDVIVVD  139 (263)
T ss_dssp             HHHHTCCSEEEEE
T ss_pred             HHhcCCCCEEEEE
Confidence            554 334588888

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=98.48  E-value=3.1e-07  Score=53.04  Aligned_cols=22  Identities=9%  Similarity=0.060  Sum_probs=20.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +-+.++|++|+|||+||+.+.+
T Consensus        43 ~giLl~GppGtGKT~la~aia~   64 (247)
T d1ixza_          43 KGVLLVGPPGVGKTHLARAVAG   64 (247)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHH
Confidence            4578999999999999999998

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.48  E-value=2.8e-08  Score=53.92  Aligned_cols=22  Identities=9%  Similarity=0.007  Sum_probs=20.5

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ++++|+|.+|+|||||+.++..
T Consensus         2 kii~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHH
Confidence            5899999999999999999887

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.47  E-value=7.7e-07  Score=50.29  Aligned_cols=22  Identities=9%  Similarity=-0.049  Sum_probs=19.0

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .||.++|+.|+||||.+.+++.
T Consensus        10 ~vi~lvGptGvGKTTTiAKLA~   31 (211)
T d2qy9a2          10 FVILMVGVNGVGKTTTIGKLAR   31 (211)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            5889999999999997777776

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.46  E-value=4.6e-08  Score=52.89  Aligned_cols=23  Identities=13%  Similarity=0.127  Sum_probs=20.7

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++.|.|++|+||||+|+.+..
T Consensus         6 ~~iivl~G~~GsGKsT~a~~La~   28 (171)
T d1knqa_           6 HHIYVLMGVSGSGKSAVASEVAH   28 (171)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46889999999999999999877

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.46  E-value=1.4e-07  Score=54.46  Aligned_cols=21  Identities=19%  Similarity=0.094  Sum_probs=19.3

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      -|.++|++|+|||++|+.+++
T Consensus        42 ~vLL~GppGtGKT~la~alA~   62 (246)
T d1d2na_          42 SVLLEGPPHSGKTALAAKIAE   62 (246)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHhh
Confidence            367899999999999999998

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=98.45  E-value=5.8e-08  Score=54.53  Aligned_cols=24  Identities=13%  Similarity=0.016  Sum_probs=22.3

Q ss_pred             CCceeeEEcCCCCcHHHHHHHHhc
Q 037564            1 FSGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         1 ~~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ++.||+|-|++|+||||+|+.+.+
T Consensus         2 ~~piI~I~GppGSGKgT~ak~La~   25 (225)
T d1ckea_           2 IAPVITIDGPSGAGKGTLCKAMAE   25 (225)
T ss_dssp             CSCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            468999999999999999999988

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.45  E-value=4.9e-08  Score=54.39  Aligned_cols=23  Identities=9%  Similarity=-0.029  Sum_probs=20.7

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +.+|.++|.+|+||||+|++++.
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            35789999999999999999987

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.44  E-value=6.8e-07  Score=50.38  Aligned_cols=56  Identities=9%  Similarity=-0.131  Sum_probs=34.2

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCC-CCCHHHHHHHHHHhhCC
Q 037564            2 SGCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSI-SYDFRMVLDDIIKSVMP   59 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~ll~~il~~l~~   59 (93)
                      .++|.++|+.|+||||.+.+++.  .....=.....++... .....+-++...+.++.
T Consensus         6 ~~vi~lvGptGvGKTTTiaKLA~--~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~i   62 (207)
T d1okkd2           6 GRVVLVVGVNGVGKTTTIAKLGR--YYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSI   62 (207)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHHH--HHHTTTCCEEEECCCCSSTTHHHHHHHHHHHHTC
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH--HHHHCCCcEEEEEeccccccchhhHhhcccccCc
Confidence            47899999999999997777766  2332212344554433 23445555566665554

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.44  E-value=3.1e-07  Score=53.45  Aligned_cols=22  Identities=14%  Similarity=0.031  Sum_probs=20.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +-|.++|++|+|||+||+.+++
T Consensus        42 ~giLL~Gp~GtGKT~l~~ala~   63 (265)
T d1r7ra3          42 KGVLFYGPPGCGKTLLAKAIAN   63 (265)
T ss_dssp             CEEEEBCCTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCcchhHHHHHHH
Confidence            4577999999999999999998

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=98.41  E-value=6.2e-08  Score=52.44  Aligned_cols=22  Identities=14%  Similarity=-0.070  Sum_probs=19.8

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      -.|.|.|++|+||||+|+.+..
T Consensus         6 ~~I~i~G~~GsGKTT~~~~La~   27 (174)
T d1y63a_           6 INILITGTPGTGKTSMAEMIAA   27 (174)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEeCCCCCHHHHHHHHHH
Confidence            3588999999999999999987

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.40  E-value=1.7e-07  Score=54.36  Aligned_cols=22  Identities=14%  Similarity=0.024  Sum_probs=20.1

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +-+.++|++|+|||++|+.+.+
T Consensus        39 ~giLL~GppGtGKT~l~~ala~   60 (258)
T d1e32a2          39 RGILLYGPPGTGKTLIARAVAN   60 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceeEEecCCCCCchHHHHHHHH
Confidence            4578999999999999999988

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.40  E-value=7.4e-08  Score=53.30  Aligned_cols=23  Identities=17%  Similarity=0.099  Sum_probs=21.0

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ||-|.|.|++|+|||||++.+..
T Consensus         1 ~rpIvl~GpsG~GK~tl~~~L~~   23 (186)
T d1gkya_           1 SRPIVISGPSGTGKSTLLKKLFA   23 (186)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            57789999999999999999876

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.39  E-value=8e-08  Score=53.22  Aligned_cols=22  Identities=14%  Similarity=0.054  Sum_probs=20.5

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+|.|.|++|+||||+|+.++.
T Consensus         7 ~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           7 NVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999999887

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.39  E-value=7.3e-08  Score=55.56  Aligned_cols=22  Identities=9%  Similarity=0.084  Sum_probs=20.1

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +.|.++|++|+||||||+.++.
T Consensus        33 ~~ilL~GpPGtGKT~la~~la~   54 (273)
T d1gvnb_          33 TAFLLGGQPGSGKTSLRSAIFE   54 (273)
T ss_dssp             EEEEEECCTTSCTHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4578999999999999999988

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=98.39  E-value=5.3e-08  Score=52.74  Aligned_cols=20  Identities=5%  Similarity=-0.034  Sum_probs=18.6

Q ss_pred             eeEEcCCCCcHHHHHHHHhc
Q 037564            5 KPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~   24 (93)
                      |.+.||+|+||||+++.++.
T Consensus         3 I~liG~~GsGKsTi~k~La~   22 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAK   22 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67889999999999999988

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.38  E-value=9.6e-08  Score=51.96  Aligned_cols=20  Identities=15%  Similarity=0.117  Sum_probs=18.9

Q ss_pred             eeEEcCCCCcHHHHHHHHhc
Q 037564            5 KPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~   24 (93)
                      |+|.|++|+|||||++.+..
T Consensus         3 i~I~G~~G~GKSTLl~~i~~   22 (178)
T d1ye8a1           3 IIITGEPGVGKTTLVKKIVE   22 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcHHHHHHHHHHh
Confidence            78999999999999999887

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.37  E-value=1.2e-07  Score=51.93  Aligned_cols=23  Identities=9%  Similarity=0.070  Sum_probs=20.5

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +.+|.++|++|+||||+|++++.
T Consensus        14 p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          14 PEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            35889999999999999998876

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=1.2e-07  Score=52.31  Aligned_cols=24  Identities=4%  Similarity=0.076  Sum_probs=21.9

Q ss_pred             CCceeeEEcCCCCcHHHHHHHHhc
Q 037564            1 FSGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         1 ~~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      |.+.|.|+|++|+|||||++++..
T Consensus         2 m~k~ivl~Gpsg~GK~tl~~~L~~   25 (178)
T d1kgda_           2 MRKTLVLLGAHGVGRRHIKNTLIT   25 (178)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHH
Confidence            568899999999999999999886

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=98.35  E-value=2.2e-06  Score=48.27  Aligned_cols=23  Identities=13%  Similarity=-0.098  Sum_probs=19.6

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .++|.++|+.|+||||.+.+++.
T Consensus        10 ~~vi~lvGp~GvGKTTTiaKLA~   32 (207)
T d1ls1a2          10 RNLWFLVGLQGSGKTTTAAKLAL   32 (207)
T ss_dssp             SEEEEEECCTTTTHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            36889999999999997777776

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=98.34  E-value=1.7e-06  Score=49.03  Aligned_cols=86  Identities=10%  Similarity=-0.033  Sum_probs=51.1

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHHHHhhCCCC----------CCccccC-CCH
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSVMPPS----------RVSVIIG-EDY   71 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~il~~l~~~~----------~~~~~~~-~~~   71 (93)
                      .++.|.|.+|+|||++|.+++.  ........+.|++...  +...+.+.. ..+....          ....... ...
T Consensus        27 sl~li~G~pGsGKT~l~~qia~--~~~~~~~~~~~is~e~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (242)
T d1tf7a2          27 SIILATGATGTGKTLLVSRFVE--NACANKERAILFAYEE--SRAQLLRNA-YSWGMDFEEMERQNLLKIVCAYPESAGL  101 (242)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH--HHHTTTCCEEEEESSS--CHHHHHHHH-HTTSCCHHHHHHTTSEEECCCCGGGSCH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHH--HHHHhccccceeeccC--CHHHHHHHH-HHcCCChHHHhhcCceEEEEeecchhhH
Confidence            5788999999999999999988  5555666677877654  333333332 2222110          0000111 456


Q ss_pred             HHHHHHHHHhcCC-CeEEEEeeC
Q 037564           72 QLKKSILRDYLTN-KKYFIVLDD   93 (93)
Q Consensus        72 ~~l~~~l~~~L~~-kr~LlVlDD   93 (93)
                      .+....+...+.. +.-++|+|+
T Consensus       102 ~~~~~~i~~~i~~~~~~~vviDs  124 (242)
T d1tf7a2         102 EDHLQIIKSEINDFKPARIAIDS  124 (242)
T ss_dssp             HHHHHHHHHHHHTTCCSEEEEEC
T ss_pred             HHHHHHHHHHHHhcCCceeeeec
Confidence            6666667666533 445777774

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=98.34  E-value=2.1e-07  Score=50.80  Aligned_cols=22  Identities=9%  Similarity=0.018  Sum_probs=20.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ++|.|.|++|+||||+++.+..
T Consensus         2 kiivi~G~~GsGKTT~~~~La~   23 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4788999999999999999987

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.34  E-value=4.6e-07  Score=51.28  Aligned_cols=20  Identities=10%  Similarity=-0.054  Sum_probs=18.6

Q ss_pred             eeEEcCCCCcHHHHHHHHhc
Q 037564            5 KPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +.++|++|+||||+++.+++
T Consensus        36 lll~Gp~G~GKTtl~~~i~~   55 (237)
T d1sxjd2          36 MLFYGPPGTGKTSTILALTK   55 (237)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCChHHHHHHHHH
Confidence            67899999999999999988

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=98.32  E-value=1.1e-07  Score=54.15  Aligned_cols=21  Identities=10%  Similarity=0.036  Sum_probs=19.1

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      -+.++|++|+||||+|+.+++
T Consensus        37 ~~L~~GPpGtGKT~lA~~la~   57 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIAS   57 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHh
Confidence            367899999999999999988

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=1.5e-07  Score=52.86  Aligned_cols=22  Identities=9%  Similarity=-0.023  Sum_probs=20.1

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      =+|+|.|.+|+||||+|+.+..
T Consensus         3 ~iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           3 FLIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999998877

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.31  E-value=1.6e-07  Score=52.05  Aligned_cols=23  Identities=9%  Similarity=-0.023  Sum_probs=21.1

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .++|.|.|++|+||||+|+.++.
T Consensus         8 ~~iI~i~GppGSGKsT~a~~La~   30 (196)
T d1ukza_           8 VSVIFVLGGPGAGKGTQCEKLVK   30 (196)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999999987

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.31  E-value=1.4e-06  Score=49.21  Aligned_cols=23  Identities=4%  Similarity=-0.099  Sum_probs=15.4

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +.||.++|+.|+||||.+.+++.
T Consensus        12 p~vi~lvGptGvGKTTTiAKLA~   34 (211)
T d1j8yf2          12 PYVIMLVGVQGTGKATTAGKLAY   34 (211)
T ss_dssp             SEEEEEECSCCC----HHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999987776665

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=98.30  E-value=1.3e-07  Score=53.85  Aligned_cols=21  Identities=10%  Similarity=0.099  Sum_probs=18.9

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      -+.++|++|+||||+|+.+++
T Consensus        37 ~~Ll~GPpG~GKTtla~~la~   57 (239)
T d1ixsb2          37 HLLLFGPPGLGKTTLAHVIAH   57 (239)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            356899999999999999988

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=98.30  E-value=2.7e-06  Score=49.62  Aligned_cols=21  Identities=19%  Similarity=0.093  Sum_probs=18.3

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      -+.++|++|+|||+++..++.
T Consensus        41 n~lLVG~~GvGKTalv~~la~   61 (268)
T d1r6bx2          41 NPLLVGESGVGKTAIAEGLAW   61 (268)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEECCCCCcHHHHHHHHHH
Confidence            466999999999999888776

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.28  E-value=2.6e-06  Score=48.15  Aligned_cols=55  Identities=7%  Similarity=-0.242  Sum_probs=32.7

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCC-CHHHHHHHHHHhhC
Q 037564            2 SGCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISY-DFRMVLDDIIKSVM   58 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~ll~~il~~l~   58 (93)
                      +.+|.++|+.|+||||.+.+++.  ....+-..+..++..... ...+-++...+.++
T Consensus        11 p~vi~lvGptGvGKTTTiAKLAa--~~~~~~~kV~lit~Dt~R~gA~eQL~~~a~~l~   66 (213)
T d1vmaa2          11 PFVIMVVGVNGTGKTTSCGKLAK--MFVDEGKSVVLAAADTFRAAAIEQLKIWGERVG   66 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH--HHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH--HHHHCCCceEEEeecccccchhHHHHHHhhhcC
Confidence            35889999999999987766666  333222334555554333 22444555555554

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=98.26  E-value=7.1e-07  Score=51.99  Aligned_cols=24  Identities=13%  Similarity=0.021  Sum_probs=20.7

Q ss_pred             CCceeeEEcCCCCcHHHHHHHHhc
Q 037564            1 FSGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         1 ~~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ++++|.+.|-||+||||+|..+..
T Consensus         7 ~p~~i~~sGKGGVGKTTvaa~lA~   30 (296)
T d1ihua1           7 IPPYLFFTGKGGVGKTSISCATAI   30 (296)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCcChHHHHHHHHHH
Confidence            468999999999999998877666

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=98.25  E-value=2.7e-07  Score=51.99  Aligned_cols=22  Identities=9%  Similarity=-0.058  Sum_probs=20.1

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+|.+.|++|+||||||+.+..
T Consensus        25 ~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          25 LTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4889999999999999999876

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.24  E-value=2.3e-07  Score=51.47  Aligned_cols=22  Identities=9%  Similarity=0.072  Sum_probs=19.6

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      |.|.|.|++|+|||||++.+..
T Consensus         1 rpIvl~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           1 RPVVLSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4578999999999999999876

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=3.2e-07  Score=50.68  Aligned_cols=22  Identities=14%  Similarity=-0.040  Sum_probs=20.4

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+|.|.|++|+||||.|+.++.
T Consensus         2 ~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999999987

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.23  E-value=1.6e-06  Score=50.77  Aligned_cols=53  Identities=17%  Similarity=0.154  Sum_probs=37.6

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCC-CHHHHHHHHHHh
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISY-DFRMVLDDIIKS   56 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~ll~~il~~   56 (93)
                      .-++|.|.+|+|||+|+..+.++. .+.+=+.++++-+.+.. ...++.+.+.+.
T Consensus        69 Qr~~If~~~g~GKt~l~~~i~~~~-~~~~~~v~V~~~iGer~~ev~~~~~~~~~~  122 (276)
T d2jdid3          69 GKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIES  122 (276)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHH-TTTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred             CEEEeeCCCCCCHHHHHHHHHHHH-HhhCCCeEEEEEeccChHHHHHHHHHHHhc
Confidence            457899999999999999987731 12233567888887653 456677777664

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.22  E-value=3.9e-07  Score=50.04  Aligned_cols=23  Identities=9%  Similarity=0.003  Sum_probs=20.9

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .++|.|.|++|+|||||++.+..
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~   24 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRE   24 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHh
Confidence            47899999999999999999876

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.21  E-value=3.5e-07  Score=51.41  Aligned_cols=21  Identities=14%  Similarity=-0.050  Sum_probs=19.4

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +|+|-|++|+||||+|+.+..
T Consensus         5 ~IaIdGp~GsGKgT~ak~La~   25 (223)
T d1q3ta_           5 QIAIDGPASSGKSTVAKIIAK   25 (223)
T ss_dssp             EEEEECSSCSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999999887

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.21  E-value=4e-07  Score=50.41  Aligned_cols=23  Identities=9%  Similarity=-0.045  Sum_probs=21.4

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +.+|.|.|++|+||||+|+.+..
T Consensus         8 ~~iI~l~G~pGSGKsT~a~~La~   30 (194)
T d3adka_           8 SKIIFVVGGPGSGKGTQCEKIVQ   30 (194)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            57899999999999999999987

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.19  E-value=4e-07  Score=49.69  Aligned_cols=20  Identities=5%  Similarity=-0.039  Sum_probs=18.6

Q ss_pred             eeEEcCCCCcHHHHHHHHhc
Q 037564            5 KPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~   24 (93)
                      |.|.|++|+||||+|+.++.
T Consensus         3 I~i~G~pGSGKsT~a~~La~   22 (182)
T d1zina1           3 LVLMGLPGAGKGTQAEKIVA   22 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            77999999999999999877

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=98.18  E-value=3.7e-07  Score=54.19  Aligned_cols=22  Identities=9%  Similarity=0.068  Sum_probs=19.7

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +-+.++||+|+|||.||+.+++
T Consensus        50 ~~iLl~GPpG~GKT~lAkalA~   71 (309)
T d1ofha_          50 KNILMIGPTGVGKTEIARRLAK   71 (309)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHhh
Confidence            4567899999999999999988

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.16  E-value=5e-07  Score=49.44  Aligned_cols=20  Identities=10%  Similarity=0.013  Sum_probs=18.6

Q ss_pred             eeEEcCCCCcHHHHHHHHhc
Q 037564            5 KPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~   24 (93)
                      |.|.|++|+||||+|+.++.
T Consensus         3 I~i~G~pGsGKsT~a~~La~   22 (181)
T d2cdna1           3 VLLLGPPGAGKGTQAVKLAE   22 (181)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67889999999999999887

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=98.15  E-value=2.6e-06  Score=47.50  Aligned_cols=21  Identities=14%  Similarity=0.147  Sum_probs=18.3

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      -+.++|.+|+|||+++..++.
T Consensus        45 n~lLvG~pGVGKTalv~~LA~   65 (195)
T d1jbka_          45 NPVLIGEPGVGKTAIVEGLAQ   65 (195)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEecCCcccHHHHHHHHH
Confidence            467899999999999888776

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.15  E-value=6.2e-07  Score=49.40  Aligned_cols=22  Identities=9%  Similarity=-0.239  Sum_probs=19.7

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      -.|.|.|++|+||||+|+.+.+
T Consensus         4 m~I~i~GppGsGKsT~a~~La~   25 (189)
T d1zaka1           4 LKVMISGAPASGKGTQCELIKT   25 (189)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3578999999999999998877

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=98.14  E-value=6.7e-07  Score=49.30  Aligned_cols=22  Identities=14%  Similarity=-0.118  Sum_probs=19.2

Q ss_pred             CceeeEEcCCCCcHHHHHHHHh
Q 037564            2 SGCKPILDSSSFDKTAFTADTY   23 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~   23 (93)
                      +-+|+|+|+.|+||||+|+.+-
T Consensus         3 p~IIgitG~~gSGKstva~~l~   24 (191)
T d1uf9a_           3 PIIIGITGNIGSGKSTVAALLR   24 (191)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
Confidence            3489999999999999999764

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=98.13  E-value=1.2e-06  Score=50.65  Aligned_cols=36  Identities=11%  Similarity=-0.027  Sum_probs=25.5

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEe
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRV   40 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~   40 (93)
                      |.|+|+|-||+||||+|..+..  .+...-..+.-+.+
T Consensus         2 r~Iai~gKGGvGKTT~a~nLA~--~LA~~G~rVllID~   37 (269)
T d1cp2a_           2 RQVAIYGKGGIGKSTTTQNLTS--GLHAMGKTIMVVGC   37 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH--HHHTTTCCEEEEEE
T ss_pred             CEEEEECCCcCCHHHHHHHHHH--HHHhCCCcEEEEec
Confidence            5789999999999999998877  44433223334444

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.12  E-value=3.4e-06  Score=49.63  Aligned_cols=79  Identities=11%  Similarity=0.061  Sum_probs=42.7

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcCcccccCC--C-eeEEEEeCCCCCHHHHHHHHHHhhCCC-CCCccccC--CCHHHHHHH
Q 037564            4 CKPILDSSSFDKTAFTADTYNNNHVKFYF--D-CHAWVRVSISYDFRMVLDDIIKSVMPP-SRVSVIIG--EDYQLKKSI   77 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~~~~~~~f--~-~~~wv~~~~~~~~~~ll~~il~~l~~~-~~~~~~~~--~~~~~l~~~   77 (93)
                      +|+|.|..|+|||||+..+..  .+.+.+  . ....+++..-+-..+-...+.+..... ....-+.+  .+.+.+.+.
T Consensus        29 iIGi~G~qGSGKSTl~~~l~~--~L~~~~~~~~~v~~iS~DdfY~t~~~r~~L~~~~~~~pl~~~RG~PgThD~~ll~~~  106 (286)
T d1odfa_          29 FIFFSGPQGSGKSFTSIQIYN--HLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKLLQEV  106 (286)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH--HHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHH--HHHHHhCCCcceEeeccCCCCCCHHHHHHHhhhccccccceecCCCcchhHHHHHHH
Confidence            789999999999999998876  443322  2 234445544333233334444433110 00000111  677777777


Q ss_pred             HHHhcCC
Q 037564           78 LRDYLTN   84 (93)
Q Consensus        78 l~~~L~~   84 (93)
                      +....++
T Consensus       107 l~~l~~~  113 (286)
T d1odfa_         107 LNTIFNN  113 (286)
T ss_dssp             HHHHTC-
T ss_pred             HHHHHhh
Confidence            7766543

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=98.12  E-value=7e-07  Score=48.91  Aligned_cols=21  Identities=5%  Similarity=-0.064  Sum_probs=19.1

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .|.|.|++|+||||+|+.++.
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVE   22 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            377899999999999999988

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=98.11  E-value=7e-07  Score=49.47  Aligned_cols=20  Identities=10%  Similarity=0.159  Sum_probs=18.1

Q ss_pred             eeEEcCCCCcHHHHHHHHhc
Q 037564            5 KPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~   24 (93)
                      |.|.|++|+||||+|+.+..
T Consensus         9 IiliG~PGSGKtT~a~~La~   28 (189)
T d2ak3a1           9 AAIMGAPGSGKGTVSSRITK   28 (189)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            56779999999999999988

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.06  E-value=9.9e-07  Score=49.91  Aligned_cols=21  Identities=10%  Similarity=-0.069  Sum_probs=19.0

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      -+.++|++|+||||+|+.+++
T Consensus        47 ~lll~Gp~G~GKTtla~~iak   67 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALAR   67 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            367899999999999999987

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=98.06  E-value=1.1e-05  Score=47.17  Aligned_cols=89  Identities=16%  Similarity=0.085  Sum_probs=48.1

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCC-CHHHHHHHHHHhhCCCCC-------CccccC-CCHHH
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISY-DFRMVLDDIIKSVMPPSR-------VSVIIG-EDYQL   73 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~ll~~il~~l~~~~~-------~~~~~~-~~~~~   73 (93)
                      .-++|.|.+|+|||+|+.....  ....+-..++++.+.... ...++.+++.+.-.....       ...... .-.-.
T Consensus        68 Qr~~Ifg~~g~GKt~l~~~~~~--~~~~~~~v~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~tsd~p~~~r~~a~~  145 (276)
T d1fx0a3          68 QRELIIGDRQTGKTAVATDTIL--NQQGQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLAPY  145 (276)
T ss_dssp             CBCBEEESSSSSHHHHHHHHHH--TCCTTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTHHHH
T ss_pred             ceEeeccCCCCChHHHHHHHHh--hhcccCceeeeeeecchhHHHHHHHHhhccCCcceeeeecccccCccHHHHHHHHH
Confidence            3578999999999999987554  223344567777776543 333444444332100000       000000 11112


Q ss_pred             HHHHHHHhc--CCCeEEEEeeC
Q 037564           74 KKSILRDYL--TNKKYFIVLDD   93 (93)
Q Consensus        74 l~~~l~~~L--~~kr~LlVlDD   93 (93)
                      ..-.+-+++  +++++|+++||
T Consensus       146 ~a~tiAEyfrd~G~~Vlll~Ds  167 (276)
T d1fx0a3         146 TGAALAEYFMYRERHTLIIYDD  167 (276)
T ss_dssp             HHHHHHHHHHHTTCEEEEEEEC
T ss_pred             HHHHHHHHHHHcCCceeEEeec
Confidence            333344554  57899999997

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.04  E-value=1.2e-06  Score=47.81  Aligned_cols=20  Identities=10%  Similarity=-0.054  Sum_probs=18.4

Q ss_pred             eeEEcCCCCcHHHHHHHHhc
Q 037564            5 KPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~   24 (93)
                      |.|.|++|+||||+|+.+..
T Consensus         3 I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           3 IILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67899999999999999887

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.04  E-value=1.5e-06  Score=48.61  Aligned_cols=22  Identities=9%  Similarity=0.069  Sum_probs=20.5

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|.|++|+|||||.+.++.
T Consensus        28 ei~~l~G~NGsGKSTLl~~i~g   49 (200)
T d1sgwa_          28 NVVNFHGPNGIGKTTLLKTIST   49 (200)
T ss_dssp             CCEEEECCTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCChHHHHHHHHhc
Confidence            5789999999999999999987

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.03  E-value=9.2e-07  Score=50.43  Aligned_cols=20  Identities=5%  Similarity=-0.049  Sum_probs=18.2

Q ss_pred             eeEEcCCCCcHHHHHHHHhc
Q 037564            5 KPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +.++|++|+||||+|+.+++
T Consensus        36 lll~Gp~G~GKTt~~~~la~   55 (252)
T d1sxje2          36 LLLYGPNGTGKKTRCMALLE   55 (252)
T ss_dssp             EEEECSTTSSHHHHHHTHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            56999999999999999877

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.03  E-value=1.1e-06  Score=48.48  Aligned_cols=21  Identities=14%  Similarity=-0.002  Sum_probs=19.6

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +|+|.|..|+||||+++.+.+
T Consensus        11 ~I~ieG~~GsGKTTl~~~L~~   31 (197)
T d2vp4a1          11 TVLIEGNIGSGKTTYLNHFEK   31 (197)
T ss_dssp             EEEEECSTTSCHHHHHHTTGG
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999998876

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.02  E-value=1.6e-06  Score=47.36  Aligned_cols=21  Identities=5%  Similarity=0.009  Sum_probs=18.6

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      -|.+.|++|+||||+|+.+..
T Consensus         4 rIvl~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           4 RMVLIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            466789999999999999987

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.02  E-value=4.3e-06  Score=47.05  Aligned_cols=39  Identities=15%  Similarity=-0.084  Sum_probs=28.7

Q ss_pred             CCceeeEE-cCCCCcHHHHHHHHhcCcccccCCCeeEEEEeC
Q 037564            1 FSGCKPIL-DSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVS   41 (93)
Q Consensus         1 ~~~~i~i~-G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~   41 (93)
                      |+++|+|+ +-||+||||+|..+..  .+.+.-..+..+...
T Consensus         1 m~~vIav~~~kGGvGKTtia~nLA~--~la~~g~~VlliD~D   40 (237)
T d1g3qa_           1 MGRIISIVSGKGGTGKTTVTANLSV--ALGDRGRKVLAVDGD   40 (237)
T ss_dssp             CCEEEEEECSSTTSSHHHHHHHHHH--HHHHTTCCEEEEECC
T ss_pred             CCeEEEEECCCCCCcHHHHHHHHHH--HHHhCCCCEEEEeCC
Confidence            68899999 6789999999999887  444443345555543

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=6.1e-06  Score=46.28  Aligned_cols=27  Identities=4%  Similarity=-0.106  Sum_probs=22.6

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhcCccccc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYNNNHVKF   30 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~   30 (93)
                      ...|+|.|+-|+||||+++.+.+  .+..
T Consensus         3 G~lI~ieG~dGsGKsT~~~~L~~--~L~~   29 (209)
T d1nn5a_           3 GALIVLEGVDRAGKSTQSRKLVE--ALCA   29 (209)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHH--HHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHH--HHHH
Confidence            35789999999999999999888  5543

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.01  E-value=7.3e-06  Score=46.10  Aligned_cols=45  Identities=2%  Similarity=-0.024  Sum_probs=31.2

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhcCcccccC----CCeeEEEEeCCCCCH
Q 037564            2 SGCKPILDSSSFDKTAFTADTYNNNHVKFY----FDCHAWVRVSISYDF   46 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~----f~~~~wv~~~~~~~~   46 (93)
                      .+++-|.|.+|+||||+|.++.........    -...+|+......+.
T Consensus        34 G~~~li~G~pGsGKT~l~lq~~~~~~~~~~~~~~~~~~~~i~~~~~~~~   82 (251)
T d1szpa2          34 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRP   82 (251)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHTTTTTSCTTTTCCSCEEEEEESSSCCCG
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhhhhhhhccCCceEEEEeecchHHH
Confidence            358899999999999999998764322222    235677776665553

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=98.01  E-value=1.5e-06  Score=47.85  Aligned_cols=20  Identities=10%  Similarity=0.044  Sum_probs=17.7

Q ss_pred             eeEEcCCCCcHHHHHHHHhc
Q 037564            5 KPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~   24 (93)
                      |.|.|++|+||||+|+.+..
T Consensus         6 iil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           6 AVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            34789999999999999887

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=98.01  E-value=1.6e-06  Score=51.53  Aligned_cols=76  Identities=11%  Similarity=0.008  Sum_probs=41.7

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCCC--eeEEEEeCCCCCHHHHHHHHHHhhCCCCCCccccC-CCHHHHHHHHH
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFD--CHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIG-EDYQLKKSILR   79 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~--~~~wv~~~~~~~~~~ll~~il~~l~~~~~~~~~~~-~~~~~l~~~l~   79 (93)
                      -+|+|.|.+|+||||+|+.+..  .+...+.  .+.-++...-+-....+..  ..+. ....  ..+ -+.+.+.+.+.
T Consensus        81 ~iIGIaG~sgSGKSTla~~L~~--lL~~~~~~~~v~~Is~D~F~~~~~~l~~--~~~~-~~~g--~Pes~D~~~L~~~L~  153 (308)
T d1sq5a_          81 YIISIAGSVAVGKSTTARVLQA--LLSRWPEHRRVELITTDGFLHPNQVLKE--RGLM-KKKG--FPESYDMHRLVKFVS  153 (308)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH--HHTTSTTCCCEEEEEGGGGBCCHHHHHH--HTCT-TCTT--SGGGBCHHHHHHHHH
T ss_pred             EEEEEeCCCCCCCcHHHHHHHH--HHhhhcCCCceEEEeeeeeECCchHHHH--hcCC-ccCC--chHhhhHHHHHHHHH
Confidence            3899999999999999999876  4443332  1223343332222222211  1111 1111  011 67778888777


Q ss_pred             HhcCCC
Q 037564           80 DYLTNK   85 (93)
Q Consensus        80 ~~L~~k   85 (93)
                      ....++
T Consensus       154 ~lk~g~  159 (308)
T d1sq5a_         154 DLKSGV  159 (308)
T ss_dssp             HHTTTC
T ss_pred             HHHcCC
Confidence            766554

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.00  E-value=1.9e-06  Score=48.34  Aligned_cols=23  Identities=9%  Similarity=0.014  Sum_probs=20.6

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ..+|.|+|++|+|||||.+.+..
T Consensus         2 G~livi~GPSG~GK~tl~~~L~~   24 (205)
T d1s96a_           2 GTLYIVSAPSGAGKSSLIQALLK   24 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHh
Confidence            36789999999999999999876

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.00  E-value=1.6e-06  Score=48.89  Aligned_cols=20  Identities=15%  Similarity=-0.069  Sum_probs=18.2

Q ss_pred             eeEEcCCCCcHHHHHHHHhc
Q 037564            5 KPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +.++|++|+||||+|+.+++
T Consensus        39 ~ll~Gp~G~GKTt~a~~la~   58 (224)
T d1sxjb2          39 MIISGMPGIGKTTSVHCLAH   58 (224)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCchhhHHHHHH
Confidence            56899999999999999887

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.98  E-value=1.9e-06  Score=48.76  Aligned_cols=21  Identities=14%  Similarity=0.109  Sum_probs=19.5

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ||+|.|+.|+|||||..++.+
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~   22 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGR   22 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            789999999999999999876

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.96  E-value=2.4e-06  Score=48.84  Aligned_cols=22  Identities=14%  Similarity=-0.006  Sum_probs=19.9

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|.|++|+|||||.+.+..
T Consensus        32 e~~~iiG~sGsGKSTLl~~i~g   53 (230)
T d1l2ta_          32 EFVSIMGPSGSGKSTMLNIIGC   53 (230)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCCcchhhHhccC
Confidence            4789999999999999998776

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=97.96  E-value=3.9e-06  Score=48.55  Aligned_cols=23  Identities=17%  Similarity=0.187  Sum_probs=19.2

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .++|.+.|-||+||||++..+..
T Consensus        20 ~~iii~sGKGGVGKTT~a~nLA~   42 (279)
T d1ihua2          20 HGLIMLMGKGGVGKTTMAAAIAV   42 (279)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            36888999999999998776655

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=97.95  E-value=1.8e-06  Score=50.84  Aligned_cols=23  Identities=13%  Similarity=0.062  Sum_probs=20.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .-++|.|.+|+|||+|+..+.++
T Consensus        44 Qr~~I~g~~g~GKT~l~~~i~~~   66 (289)
T d1xpua3          44 QRGLIVAPPKAGKTMLLQNIAQS   66 (289)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHHH
T ss_pred             CeeeEeCCCCCCHHHHHHHHHHH
Confidence            45789999999999999998873

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=97.95  E-value=2.8e-06  Score=48.81  Aligned_cols=22  Identities=9%  Similarity=0.006  Sum_probs=20.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|.|++|+|||||++.+..
T Consensus        32 e~~~iiG~sGsGKSTLl~~i~G   53 (240)
T d3dhwc1          32 QIYGVIGASGAGKSTLIRCVNL   53 (240)
T ss_dssp             CEEEEEESTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHcC
Confidence            4789999999999999999876

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=97.95  E-value=2.8e-06  Score=48.85  Aligned_cols=22  Identities=18%  Similarity=0.009  Sum_probs=20.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|.|++|+|||||++.++.
T Consensus        30 e~~~liG~sGaGKSTll~~i~g   51 (240)
T d1g2912          30 EFMILLGPSGCGKTTTLRMIAG   51 (240)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCChHHHHHHHHhc
Confidence            4789999999999999999876

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.94  E-value=1.7e-05  Score=44.88  Aligned_cols=47  Identities=6%  Similarity=0.050  Sum_probs=32.1

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccc----cCCCeeEEEEeCCCCCHHHH
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVK----FYFDCHAWVRVSISYDFRMV   49 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~----~~f~~~~wv~~~~~~~~~~l   49 (93)
                      +++.|.|++|+|||++|.+++.+....    ......+|+..........+
T Consensus        37 ~~~li~G~pGsGKT~~~lq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (254)
T d1pzna2          37 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI   87 (254)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHhhchHHhcCCCceEEEEeccchhHHHHH
Confidence            588999999999999999887632111    11345677777666665443

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.93  E-value=3e-06  Score=48.47  Aligned_cols=22  Identities=9%  Similarity=0.004  Sum_probs=20.0

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|.|++|+|||||.+.+..
T Consensus        27 ei~~liGpsGsGKSTLl~~i~G   48 (232)
T d2awna2          27 EFVVFVGPSGCGKSTLLRMIAG   48 (232)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCChHHHHHHHHhc
Confidence            4789999999999999998865

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.93  E-value=3e-06  Score=49.02  Aligned_cols=22  Identities=9%  Similarity=0.051  Sum_probs=20.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ..++|+|++|+|||||++.+..
T Consensus        42 e~iaivG~sGsGKSTLl~ll~g   63 (253)
T d3b60a1          42 KTVALVGRSGSGKSTIASLITR   63 (253)
T ss_dssp             CEEEEEECTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCChHHHHHHHHhc
Confidence            4799999999999999999876

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.93  E-value=3e-06  Score=48.69  Aligned_cols=22  Identities=18%  Similarity=0.070  Sum_probs=20.3

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ..++|+|++|+|||||++.+..
T Consensus        30 e~vaIvG~sGsGKSTLl~ll~g   51 (241)
T d2pmka1          30 EVIGIVGRSGSGKSTLTKLIQR   51 (241)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            4789999999999999999887

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.91  E-value=2.7e-06  Score=47.92  Aligned_cols=20  Identities=10%  Similarity=-0.057  Sum_probs=18.4

Q ss_pred             eeEEcCCCCcHHHHHHHHhc
Q 037564            5 KPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +.++|++|+||||+|+.+++
T Consensus        38 lLl~Gp~G~GKttl~~~la~   57 (227)
T d1sxjc2          38 LLFYGPPGTGKTSTIVALAR   57 (227)
T ss_dssp             EEEECSSSSSHHHHHHHHHH
T ss_pred             EEEECCCCCChhHHHHHHHH
Confidence            56899999999999999988

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.91  E-value=3.4e-06  Score=48.42  Aligned_cols=22  Identities=18%  Similarity=0.010  Sum_probs=20.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|.|++|+|||||.+.+..
T Consensus        33 e~~~liGpsGaGKSTLl~~i~G   54 (239)
T d1v43a3          33 EFLVLLGPSGCGKTTTLRMIAG   54 (239)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCChHHHHHHHHHc
Confidence            4789999999999999999876

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=97.91  E-value=3.8e-06  Score=46.90  Aligned_cols=23  Identities=9%  Similarity=-0.111  Sum_probs=20.0

Q ss_pred             CCceeeEEcCCCCcHHHHHHHHh
Q 037564            1 FSGCKPILDSSSFDKTAFTADTY   23 (93)
Q Consensus         1 ~~~~i~i~G~~G~GKTtLa~~~~   23 (93)
                      |+-+|+|+|..|+||||+|+.+-
T Consensus         1 M~~iIgITG~igSGKStv~~~l~   23 (205)
T d1jjva_           1 MTYIVGLTGGIGSGKTTIANLFT   23 (205)
T ss_dssp             CCEEEEEECSTTSCHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHH
Confidence            46689999999999999998663

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.91  E-value=3.2e-06  Score=49.06  Aligned_cols=22  Identities=23%  Similarity=0.146  Sum_probs=20.3

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|.|++|+|||||++.+..
T Consensus        29 Ei~~iiG~sGsGKSTLl~~i~G   50 (258)
T d1b0ua_          29 DVISIIGSSGSGKSTFLRCINF   50 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCcHHHHHHHHHc
Confidence            4789999999999999999876

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=4e-06  Score=48.46  Aligned_cols=22  Identities=14%  Similarity=0.131  Sum_probs=20.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ..++|+|++|+|||||++.+..
T Consensus        41 e~vaivG~sGsGKSTLl~li~g   62 (251)
T d1jj7a_          41 EVTALVGPNGSGKSTVAALLQN   62 (251)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCcHHHHHHHHhc
Confidence            4789999999999999999876

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=97.89  E-value=3.7e-06  Score=48.36  Aligned_cols=22  Identities=9%  Similarity=-0.106  Sum_probs=20.1

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ..++|+|++|+|||||++.+..
T Consensus        29 e~vaivG~sGsGKSTLl~ll~g   50 (242)
T d1mv5a_          29 SIIAFAGPSGGGKSTIFSLLER   50 (242)
T ss_dssp             EEEEEECCTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999999876

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=97.89  E-value=5.6e-06  Score=48.27  Aligned_cols=37  Identities=11%  Similarity=-0.065  Sum_probs=25.0

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVS   41 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~   41 (93)
                      +.|+|.|-||+||||+|..+..  .+...-..+.-+...
T Consensus         3 r~IaisgKGGVGKTT~a~NLA~--~LA~~G~rVLlID~D   39 (289)
T d2afhe1           3 RQCAIYGKGGIGKSTTTQNLVA--ALAEMGKKVMIVGCD   39 (289)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH--HHHHTTCCEEEEEEC
T ss_pred             cEEEEECCCCCCHHHHHHHHHH--HHHHCCCCEEEEecC
Confidence            5678899999999998888776  343332224444543

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.87  E-value=4.6e-06  Score=48.91  Aligned_cols=23  Identities=17%  Similarity=0.063  Sum_probs=20.8

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .+++|+|++|+|||||++.++.-
T Consensus        63 e~vaivG~nGsGKSTLl~~i~Gl   85 (281)
T d1r0wa_          63 EMLAITGSTGSGKTSLLMLILGE   85 (281)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCChHHHHHHHHhCC
Confidence            57899999999999999998873

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.87  E-value=4.4e-06  Score=47.98  Aligned_cols=21  Identities=14%  Similarity=0.097  Sum_probs=19.5

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +++|.|++|+|||||.+.+..
T Consensus        26 ~~~liGpnGaGKSTll~~i~G   46 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAG   46 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCChHHHHHHHHHc
Confidence            678999999999999999887

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=97.87  E-value=7.9e-06  Score=48.86  Aligned_cols=23  Identities=9%  Similarity=-0.062  Sum_probs=20.7

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +.+|+|.|++|+|||||...+..
T Consensus        54 ~~~IgitG~pGaGKSTLi~~l~~   76 (327)
T d2p67a1          54 TLRLGVTGTPGAGKSTFLEAFGM   76 (327)
T ss_dssp             SEEEEEEECTTSCHHHHHHHHHH
T ss_pred             ceEEEeeCCCCCCHHHHHHHHHH
Confidence            46899999999999999998876

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.86  E-value=1.6e-05  Score=44.26  Aligned_cols=23  Identities=17%  Similarity=-0.074  Sum_probs=20.8

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ++.|+|-|+.|+||||+++.+..
T Consensus         2 gkfIviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           2 SKYIVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             CCEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999999877

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=97.85  E-value=4.1e-05  Score=46.68  Aligned_cols=20  Identities=15%  Similarity=0.184  Sum_probs=16.5

Q ss_pred             eeEEcCCCCcHHHHHHHHhc
Q 037564            5 KPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +.++|++|+|||+++..++.
T Consensus        46 ~llvG~~GvGKtaiv~~la~   65 (387)
T d1qvra2          46 PVLIGEPGVGKTAIVEGLAQ   65 (387)
T ss_dssp             CEEEECTTSCHHHHHHHHHH
T ss_pred             CeEECCCCCCHHHHHHHHHH
Confidence            56789999999998876655

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=97.84  E-value=4.8e-06  Score=44.02  Aligned_cols=21  Identities=10%  Similarity=-0.067  Sum_probs=18.7

Q ss_pred             eeEEcCCCCcHHHHHHHHhcC
Q 037564            5 KPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      |.++|.+|+|||||..++..+
T Consensus         3 ivlvG~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           3 ILMVGLDAAGKTTILYKLKLG   23 (160)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            679999999999999998754

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.83  E-value=5e-06  Score=49.62  Aligned_cols=23  Identities=9%  Similarity=-0.122  Sum_probs=20.6

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +.+|+|.|++|+|||||..++..
T Consensus        51 ~~~igitG~pGaGKSTli~~l~~   73 (323)
T d2qm8a1          51 AIRVGITGVPGVGKSTTIDALGS   73 (323)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEeeeCCCCCCHHHHHHHHHH
Confidence            46899999999999999998876

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=97.83  E-value=3.8e-06  Score=47.94  Aligned_cols=22  Identities=23%  Similarity=0.087  Sum_probs=20.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      -+++|.|++|+|||||.+.+..
T Consensus        27 e~~~liGpsGaGKSTll~~l~G   48 (229)
T d3d31a2          27 EYFVILGPTGAGKTLFLELIAG   48 (229)
T ss_dssp             CEEEEECCCTHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCcHHHHHHHHhc
Confidence            4789999999999999999876

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=3e-06  Score=47.86  Aligned_cols=22  Identities=14%  Similarity=-0.009  Sum_probs=20.4

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +.|+|-|+-|+||||+++.+..
T Consensus         3 k~I~ieG~dGsGKST~~~~L~~   24 (241)
T d1p5zb_           3 KKISIEGNIAAGKSTFVNILKQ   24 (241)
T ss_dssp             EEEEEECSTTSSHHHHHTTTGG
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999998877

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.82  E-value=5.6e-06  Score=44.98  Aligned_cols=24  Identities=17%  Similarity=0.264  Sum_probs=21.5

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhcC
Q 037564            2 SGCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      ++.|+++|.+|+|||||.+.+...
T Consensus         5 ~~~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           5 SGFVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCC
Confidence            467999999999999999999864

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=97.81  E-value=6.2e-06  Score=47.34  Aligned_cols=22  Identities=9%  Similarity=0.054  Sum_probs=20.4

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|.|++|.|||||.+.+..
T Consensus        33 ei~~liGpnGaGKSTl~~~i~G   54 (240)
T d1ji0a_          33 QIVTLIGANGAGKTTTLSAIAG   54 (240)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCcHHHHHHHHhC
Confidence            4889999999999999999887

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=97.80  E-value=6.2e-06  Score=47.28  Aligned_cols=23  Identities=9%  Similarity=-0.116  Sum_probs=20.7

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .+++|.|+.|+|||||.+.+..-
T Consensus        29 ei~glvG~nGaGKSTLl~~l~G~   51 (238)
T d1vpla_          29 EIFGLIGPNGAGKTTTLRIISTL   51 (238)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            48899999999999999998873

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.80  E-value=2.1e-06  Score=50.50  Aligned_cols=22  Identities=9%  Similarity=-0.037  Sum_probs=17.1

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+|+|.|.+|+||||+++.+.+
T Consensus         5 pIIgIaG~SGSGKTTva~~l~~   26 (288)
T d1a7ja_           5 PIISVTGSSGAGTSTVKHTFDQ   26 (288)
T ss_dssp             CEEEEESCC---CCTHHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHHH
Confidence            5899999999999999998766

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=6e-06  Score=46.77  Aligned_cols=23  Identities=13%  Similarity=0.042  Sum_probs=21.1

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ++.|+|-|+-|+||||+++.+..
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~   24 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHH
Confidence            57899999999999999999887

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=97.79  E-value=6.8e-06  Score=45.96  Aligned_cols=20  Identities=5%  Similarity=-0.057  Sum_probs=18.0

Q ss_pred             eeeEEcCCCCcHHHHHHHHh
Q 037564            4 CKPILDSSSFDKTAFTADTY   23 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~   23 (93)
                      +|+|+|+.|+||||.|+.+-
T Consensus         5 iIgitG~igSGKStv~~~l~   24 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAFA   24 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEECCCcCCHHHHHHHHH
Confidence            89999999999999998653

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.78  E-value=7.2e-06  Score=47.41  Aligned_cols=23  Identities=9%  Similarity=0.033  Sum_probs=20.8

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .+++|.|++|+|||||++.+..-
T Consensus        31 ei~~liG~nGaGKSTLl~~i~Gl   53 (254)
T d1g6ha_          31 DVTLIIGPNGSGKSTLINVITGF   53 (254)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCcHHHHHHHHHCC
Confidence            47899999999999999998873

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=97.78  E-value=6.8e-06  Score=43.69  Aligned_cols=21  Identities=19%  Similarity=-0.013  Sum_probs=19.2

Q ss_pred             eeEEcCCCCcHHHHHHHHhcC
Q 037564            5 KPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      |+|+|.+|+|||||.+++..+
T Consensus         8 I~ivG~~~vGKSSLi~~~~~~   28 (169)
T d1upta_           8 ILILGLDGAGKTTILYRLQVG   28 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999998775

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.77  E-value=7.2e-06  Score=45.43  Aligned_cols=21  Identities=10%  Similarity=-0.013  Sum_probs=19.3

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .|+|.|.-|+||||+++.+..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999998877

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=97.77  E-value=6e-06  Score=49.08  Aligned_cols=21  Identities=14%  Similarity=0.101  Sum_probs=18.9

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ++.++|++|+|||.+|+.+..
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~   75 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAA   75 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHHH
Confidence            567889999999999998877

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=7.9e-05  Score=41.96  Aligned_cols=45  Identities=4%  Similarity=-0.044  Sum_probs=31.0

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcc----cccCCCeeEEEEeCCCCCHH
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNH----VKFYFDCHAWVRVSISYDFR   47 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~----~~~~f~~~~wv~~~~~~~~~   47 (93)
                      +++.|.|++|+|||++|.+++....    ....+....|+.........
T Consensus        38 ~~~~i~G~~GsGKT~lalq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (258)
T d1v5wa_          38 AITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPD   86 (258)
T ss_dssp             EEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHhhhhcccccceEEEechHHHHHHH
Confidence            5889999999999999999875311    12234456677666655543

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.74  E-value=1.2e-05  Score=43.11  Aligned_cols=22  Identities=5%  Similarity=0.104  Sum_probs=19.2

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.++|.+|+|||||..++.+.
T Consensus         4 Kv~liG~~~vGKSsLi~rl~~~   25 (164)
T d1z2aa1           4 KMVVVGNGAVGKSSMIQRYCKG   25 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3678999999999999988864

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.74  E-value=8.9e-06  Score=43.93  Aligned_cols=24  Identities=13%  Similarity=0.242  Sum_probs=21.1

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhcC
Q 037564            2 SGCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      ++.|++.|.+|+|||||..++.+.
T Consensus         5 ~~~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           5 CGFIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEEEEECSSSSSHHHHHHHHHTC
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCC
Confidence            357889999999999999999863

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=1.1e-05  Score=44.31  Aligned_cols=24  Identities=8%  Similarity=-0.011  Sum_probs=20.7

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhcC
Q 037564            2 SGCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .+++.|.|++|+|||++|.+++.+
T Consensus        23 G~v~~i~G~~GsGKT~l~l~la~~   46 (242)
T d1n0wa_          23 GSITEMFGEFRTGKTQICHTLAVT   46 (242)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHH
Confidence            357889999999999999988763

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=9.5e-06  Score=43.87  Aligned_cols=21  Identities=10%  Similarity=0.150  Sum_probs=18.8

Q ss_pred             eeEEcCCCCcHHHHHHHHhcC
Q 037564            5 KPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      |.++|.+|+|||||+.++.++
T Consensus         6 ivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           6 YIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHhcC
Confidence            678999999999999998765

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.72  E-value=4.9e-06  Score=47.84  Aligned_cols=22  Identities=27%  Similarity=0.107  Sum_probs=20.1

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+++|.|++|+|||||.+.+..
T Consensus        32 e~~~iiG~sGsGKSTll~~i~g   53 (242)
T d1oxxk2          32 ERFGILGPSGAGKTTFMRIIAG   53 (242)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCcHHHHHHHHHc
Confidence            4789999999999999998876

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.71  E-value=1.3e-05  Score=43.15  Aligned_cols=22  Identities=9%  Similarity=0.111  Sum_probs=19.5

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .|++.|.+|+|||||.+++...
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~   23 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKK   23 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999763

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.70  E-value=2.2e-05  Score=44.05  Aligned_cols=37  Identities=14%  Similarity=-0.045  Sum_probs=26.9

Q ss_pred             ceeeEE-cCCCCcHHHHHHHHhcCcccccCCCeeEEEEeC
Q 037564            3 GCKPIL-DSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVS   41 (93)
Q Consensus         3 ~~i~i~-G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~   41 (93)
                      ++|+|+ |-||+||||+|..++.  .+.+.-..+..+...
T Consensus         2 kvIav~s~KGGvGKTtia~nlA~--~la~~g~~VlliD~D   39 (232)
T d1hyqa_           2 RTITVASGKGGTGKTTITANLGV--ALAQLGHDVTIVDAD   39 (232)
T ss_dssp             EEEEEEESSSCSCHHHHHHHHHH--HHHHTTCCEEEEECC
T ss_pred             EEEEEECCCCCChHHHHHHHHHH--HHHhCCCCEEEEeCC
Confidence            578887 8899999999998887  444443445566553

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.70  E-value=1.1e-05  Score=43.09  Aligned_cols=21  Identities=19%  Similarity=0.172  Sum_probs=19.0

Q ss_pred             eeEEcCCCCcHHHHHHHHhcC
Q 037564            5 KPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      |.+.|.+|+|||||..++.++
T Consensus         5 v~liG~~~vGKTsLl~~~~~~   25 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFCAG   25 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678999999999999998864

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=1.3e-05  Score=43.07  Aligned_cols=21  Identities=5%  Similarity=0.162  Sum_probs=18.8

Q ss_pred             eeEEcCCCCcHHHHHHHHhcC
Q 037564            5 KPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      |.+.|.+|+|||||..++..+
T Consensus         5 i~viG~~~vGKTsLi~r~~~~   25 (171)
T d2erxa1           5 VAVFGAGGVGKSSLVLRFVKG   25 (171)
T ss_dssp             EEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            678999999999999998874

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.69  E-value=0.00016  Score=42.37  Aligned_cols=53  Identities=13%  Similarity=0.053  Sum_probs=31.3

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCccccc-CC-----CeeEEEEeCCCC-CHHHHHHHHHH
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKF-YF-----DCHAWVRVSISY-DFRMVLDDIIK   55 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~-~f-----~~~~wv~~~~~~-~~~~ll~~il~   55 (93)
                      .-++|.|.+|+|||+|+..+........ .-     ..+++.-+.+.. ...++.+.+.+
T Consensus        69 Qr~~If~~~g~GKt~ll~~~~~~~~~~~~~~~~~~~~~~v~~~IGer~~E~~e~~~~~~~  128 (285)
T d2jdia3          69 QRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTD  128 (285)
T ss_dssp             CBCEEEESTTSSHHHHHHHHHHHTHHHHTSSCTTTCCEEEEEEESCCHHHHHHHHHHHHH
T ss_pred             CEEEeecCCCCChHHHHHHHHHhHHhhccccccccceEEEEeeeCccHHHHHHHHHHhcc
Confidence            4578999999999999887765311111 11     134556665543 34555555544

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.68  E-value=7.4e-06  Score=47.41  Aligned_cols=22  Identities=9%  Similarity=-0.068  Sum_probs=19.8

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ..++|+|++|+|||||++.+..
T Consensus        45 e~vaivG~sGsGKSTLl~ll~g   66 (255)
T d2hyda1          45 ETVAFVGMSGGGKSTLINLIPR   66 (255)
T ss_dssp             CEEEEECSTTSSHHHHHTTTTT
T ss_pred             CEEEEECCCCCcHHHHHHHHHh
Confidence            4789999999999999998765

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=1.2e-05  Score=43.09  Aligned_cols=21  Identities=10%  Similarity=0.090  Sum_probs=18.6

Q ss_pred             eeEEcCCCCcHHHHHHHHhcC
Q 037564            5 KPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      |.++|.+|+|||||..++.++
T Consensus         7 ivlvG~~~vGKTsli~~~~~~   27 (166)
T d1z0fa1           7 YIIIGDMGVGKSCLLHQFTEK   27 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678999999999999998764

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=97.68  E-value=9.3e-06  Score=46.30  Aligned_cols=22  Identities=9%  Similarity=0.075  Sum_probs=20.0

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      -+++|.|++|.|||||.+.+..
T Consensus        26 ei~~iiG~nGaGKSTLl~~l~G   47 (231)
T d1l7vc_          26 EILHLVGPNGAGKSTLLARMAG   47 (231)
T ss_dssp             CEEECBCCTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCCcHHHHHHHHhC
Confidence            4789999999999999998876

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=97.68  E-value=1.3e-05  Score=42.80  Aligned_cols=21  Identities=14%  Similarity=0.052  Sum_probs=19.0

Q ss_pred             eeEEcCCCCcHHHHHHHHhcC
Q 037564            5 KPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      |.++|.+|+|||||...+...
T Consensus         5 i~ivG~~~~GKTsLi~~l~~~   25 (165)
T d1ksha_           5 LLMLGLDNAGKTTILKKFNGE   25 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHTTC
T ss_pred             EEEECCCCCCHHHHHHHHcCC
Confidence            679999999999999998764

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.67  E-value=1.3e-05  Score=45.02  Aligned_cols=23  Identities=17%  Similarity=-0.038  Sum_probs=20.8

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +..|+|-|+-|+||||+++.+..
T Consensus         3 Gk~I~iEG~DGsGKST~~~~L~~   25 (214)
T d1tmka_           3 GKLILIEGLDRTGKTTQCNILYK   25 (214)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCCcHHHHHHHHHH
Confidence            46799999999999999999887

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.67  E-value=9.9e-06  Score=43.67  Aligned_cols=22  Identities=14%  Similarity=-0.002  Sum_probs=19.5

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.++|.+|+|||||..++...
T Consensus        15 kI~lvG~~~vGKTsLl~~l~~~   36 (186)
T d1f6ba_          15 KLVFLGLDNAGKTTLLHMLKDD   36 (186)
T ss_dssp             EEEEEEETTSSHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4779999999999999998764

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=97.67  E-value=1.2e-05  Score=47.89  Aligned_cols=25  Identities=12%  Similarity=0.061  Sum_probs=20.7

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccc
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVK   29 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~   29 (93)
                      +++.++|++|+|||.||+.++.  ++.
T Consensus       124 g~~l~~G~pG~GKT~la~ala~--~~~  148 (321)
T d1w44a_         124 GMVIVTGKGNSGKTPLVHALGE--ALG  148 (321)
T ss_dssp             EEEEEECSSSSCHHHHHHHHHH--HHH
T ss_pred             ceEEEECCCCccHHHHHHHHHH--Hhc
Confidence            3556689999999999999998  544

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=97.66  E-value=1.4e-05  Score=48.41  Aligned_cols=22  Identities=14%  Similarity=-0.017  Sum_probs=20.5

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +.+.++|++|+|||++|+.+++
T Consensus       155 ~~~~~~g~~~~gk~~~~~~~~~  176 (362)
T d1svma_         155 RYWLFKGPIDSGKTTLAAALLE  176 (362)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999999988

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=1.5e-05  Score=43.48  Aligned_cols=21  Identities=29%  Similarity=0.222  Sum_probs=18.8

Q ss_pred             eeEEcCCCCcHHHHHHHHhcC
Q 037564            5 KPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      |.++|.+|+|||||+..+.+.
T Consensus         8 i~ivG~~~vGKTsLi~~l~~~   28 (186)
T d2f7sa1           8 LLALGDSGVGKTTFLYRYTDN   28 (186)
T ss_dssp             EEEESCTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCcCHHHHHHHHhcC
Confidence            678999999999999998864

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=1.5e-05  Score=42.63  Aligned_cols=21  Identities=19%  Similarity=0.175  Sum_probs=18.8

Q ss_pred             eeEEcCCCCcHHHHHHHHhcC
Q 037564            5 KPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      |.++|.+|+|||||.+++.++
T Consensus         3 v~vvG~~~vGKTsLi~r~~~~   23 (164)
T d1yzqa1           3 LVFLGEQSVGKTSLITRFMYD   23 (164)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678899999999999998764

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.64  E-value=1.5e-05  Score=42.91  Aligned_cols=21  Identities=29%  Similarity=0.290  Sum_probs=18.7

Q ss_pred             eeEEcCCCCcHHHHHHHHhcC
Q 037564            5 KPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      |.++|.+|+|||||...+.++
T Consensus         8 i~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           8 ILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHcC
Confidence            678999999999999988764

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=1.7e-05  Score=42.64  Aligned_cols=21  Identities=14%  Similarity=0.039  Sum_probs=18.7

Q ss_pred             eeEEcCCCCcHHHHHHHHhcC
Q 037564            5 KPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      |.++|.+|+|||||+..+.+.
T Consensus         4 i~lvG~~~vGKTsLi~~~~~~   24 (168)
T d2gjsa1           4 VLLLGAPGVGKSALARIFGGV   24 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEECCCCcCHHHHHHHHhCC
Confidence            678999999999999998764

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.63  E-value=1.7e-05  Score=41.75  Aligned_cols=22  Identities=18%  Similarity=0.015  Sum_probs=19.6

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.++|.+|+|||||...+...
T Consensus         2 KI~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999998864

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=97.62  E-value=1.9e-05  Score=43.35  Aligned_cols=22  Identities=18%  Similarity=0.221  Sum_probs=20.0

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .|+|+|.+|+|||||...+.+.
T Consensus        25 ~I~lvG~~n~GKSTLin~L~g~   46 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHhcCC
Confidence            5999999999999999999863

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=1.7e-05  Score=42.56  Aligned_cols=21  Identities=24%  Similarity=0.273  Sum_probs=18.9

Q ss_pred             eeEEcCCCCcHHHHHHHHhcC
Q 037564            5 KPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      |.++|.+|+|||||..++.++
T Consensus         6 i~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           6 VVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678999999999999998764

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.62  E-value=1.8e-05  Score=42.51  Aligned_cols=21  Identities=10%  Similarity=0.110  Sum_probs=18.8

Q ss_pred             eeEEcCCCCcHHHHHHHHhcC
Q 037564            5 KPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      |.++|.+|+|||||..++.++
T Consensus         7 i~lvG~~~vGKTsli~rl~~~   27 (167)
T d1z0ja1           7 VCLLGDTGVGKSSIMWRFVED   27 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678999999999999998764

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=1.8e-05  Score=42.48  Aligned_cols=21  Identities=19%  Similarity=0.222  Sum_probs=18.7

Q ss_pred             eeEEcCCCCcHHHHHHHHhcC
Q 037564            5 KPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      |.++|.+|+|||||..++..+
T Consensus         6 ivlvG~~~vGKTsLi~r~~~~   26 (167)
T d1z08a1           6 VVLLGEGCVGKTSLVLRYCEN   26 (167)
T ss_dssp             EEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678999999999999998764

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=1.6e-05  Score=42.80  Aligned_cols=21  Identities=10%  Similarity=0.140  Sum_probs=18.8

Q ss_pred             eeEEcCCCCcHHHHHHHHhcC
Q 037564            5 KPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      |.++|.+|+|||||.+++.++
T Consensus         8 i~lvG~~~vGKTsLi~~l~~~   28 (171)
T d2ew1a1           8 IVLIGNAGVGKTCLVRRFTQG   28 (171)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678999999999999998864

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=1.8e-05  Score=42.54  Aligned_cols=21  Identities=14%  Similarity=0.221  Sum_probs=19.0

Q ss_pred             eeEEcCCCCcHHHHHHHHhcC
Q 037564            5 KPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      |.++|.+|+|||+|..++.++
T Consensus         5 i~lvG~~~vGKTsli~r~~~~   25 (168)
T d2atva1           5 LAIFGRAGVGKSALVVRFLTK   25 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            678999999999999998864

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=97.61  E-value=1.7e-05  Score=42.77  Aligned_cols=22  Identities=14%  Similarity=0.051  Sum_probs=19.4

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.++|.+|+|||||..++...
T Consensus        18 kI~vvG~~~vGKSsLi~~l~~~   39 (176)
T d1fzqa_          18 RILLLGLDNAGKTTLLKQLASE   39 (176)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3789999999999999998764

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.61  E-value=1.8e-05  Score=42.35  Aligned_cols=21  Identities=10%  Similarity=0.162  Sum_probs=18.8

Q ss_pred             eeEEcCCCCcHHHHHHHHhcC
Q 037564            5 KPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      |.++|.+|+|||||..++..+
T Consensus         5 i~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678999999999999998764

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=1.8e-05  Score=42.61  Aligned_cols=21  Identities=14%  Similarity=0.175  Sum_probs=18.8

Q ss_pred             eeEEcCCCCcHHHHHHHHhcC
Q 037564            5 KPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      |.++|.+|+|||||..++.++
T Consensus         9 i~vvG~~~vGKTsLi~~l~~~   29 (170)
T d1r2qa_           9 LVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678999999999999998854

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.60  E-value=2.2e-05  Score=44.60  Aligned_cols=22  Identities=9%  Similarity=-0.047  Sum_probs=18.9

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ..+.++|++|+||||+|+.+++
T Consensus        35 ~~~Ll~Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          35 HAYLFSGTRGVGKTSIARLLAK   56 (239)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHH
T ss_pred             eeEEEECCCCCcHHHHHHHHHH
Confidence            4467899999999999998765

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.59  E-value=2.4e-05  Score=42.12  Aligned_cols=21  Identities=29%  Similarity=0.275  Sum_probs=18.5

Q ss_pred             eeEEcCCCCcHHHHHHHHhcC
Q 037564            5 KPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      |.++|.+|+|||||...+.++
T Consensus         5 i~~vG~~~vGKSsLi~~~~~~   25 (175)
T d1ky3a_           5 VIILGDSGVGKTSLMHRYVND   25 (175)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHcC
Confidence            679999999999999998753

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.59  E-value=1.8e-05  Score=46.99  Aligned_cols=21  Identities=14%  Similarity=0.063  Sum_probs=19.1

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ++.++|++|+|||.||+.+..
T Consensus        54 ~~lf~Gp~GvGKT~lak~la~   74 (315)
T d1r6bx3          54 SFLFAGPTGVGKTEVTVQLSK   74 (315)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCcchhHHHHHHHHh
Confidence            567899999999999999887

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=1.9e-05  Score=42.60  Aligned_cols=21  Identities=5%  Similarity=0.089  Sum_probs=18.6

Q ss_pred             eeEEcCCCCcHHHHHHHHhcC
Q 037564            5 KPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      |.++|.+|+|||||+.++..+
T Consensus         8 I~lvG~~~vGKTsll~~~~~~   28 (174)
T d2bmea1           8 FLVIGNAGTGKSCLLHQFIEK   28 (174)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            689999999999999998753

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=2.2e-05  Score=42.10  Aligned_cols=21  Identities=24%  Similarity=0.270  Sum_probs=18.8

Q ss_pred             eeEEcCCCCcHHHHHHHHhcC
Q 037564            5 KPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      |.++|.+|+|||+|..++..+
T Consensus         6 ivvvG~~~vGKTsli~r~~~~   26 (167)
T d1c1ya_           6 LVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            678999999999999998765

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.57  E-value=2.2e-05  Score=43.45  Aligned_cols=23  Identities=9%  Similarity=-0.028  Sum_probs=20.3

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      +-|.|.|.+|+|||||..++...
T Consensus         1 k~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           1 RAVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHHcC
Confidence            45899999999999999998764

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=2e-05  Score=42.60  Aligned_cols=22  Identities=14%  Similarity=0.155  Sum_probs=19.3

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.++|.+|+|||||...+.++
T Consensus         8 Kv~lvG~~~vGKTsLi~r~~~~   29 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALTIQFIQS   29 (173)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3789999999999999998764

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=2.1e-05  Score=42.54  Aligned_cols=21  Identities=14%  Similarity=0.183  Sum_probs=18.7

Q ss_pred             eeEEcCCCCcHHHHHHHHhcC
Q 037564            5 KPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      |.++|.+|+|||||+.++.++
T Consensus         7 i~vvG~~~vGKTsLi~~~~~~   27 (175)
T d2f9la1           7 VVLIGDSGVGKSNLLSRFTRN   27 (175)
T ss_dssp             EEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            679999999999999998764

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=97.57  E-value=2.5e-05  Score=42.01  Aligned_cols=22  Identities=18%  Similarity=-0.026  Sum_probs=19.4

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.++|.+|+|||||..++...
T Consensus        17 kI~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1          17 KVIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3779999999999999998765

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.56  E-value=2.4e-05  Score=43.17  Aligned_cols=23  Identities=13%  Similarity=-0.010  Sum_probs=20.4

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      ..|+|+|.+|+|||||...+.+.
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            46899999999999999999764

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=2.2e-05  Score=42.29  Aligned_cols=21  Identities=14%  Similarity=0.207  Sum_probs=18.7

Q ss_pred             eeEEcCCCCcHHHHHHHHhcC
Q 037564            5 KPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      |.++|.+|+|||||..++..+
T Consensus         8 i~lvG~~~vGKTsLi~r~~~~   28 (171)
T d2erya1           8 LVVVGGGGVGKSALTIQFIQS   28 (171)
T ss_dssp             EEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            788999999999999988764

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=2.3e-05  Score=41.98  Aligned_cols=21  Identities=19%  Similarity=0.278  Sum_probs=19.0

Q ss_pred             eeEEcCCCCcHHHHHHHHhcC
Q 037564            5 KPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      |.+.|.+|+|||||..++.++
T Consensus         6 i~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           6 LVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            788999999999999998864

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=2.1e-05  Score=42.12  Aligned_cols=22  Identities=23%  Similarity=0.187  Sum_probs=19.3

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.|.|.+|+|||||..++.++
T Consensus         6 Kv~liG~~~vGKTsLl~~~~~~   27 (167)
T d1xtqa1           6 KIAILGYRSVGKSSLTIQFVEG   27 (167)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4788999999999999998764

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.56  E-value=1.6e-05  Score=43.25  Aligned_cols=21  Identities=10%  Similarity=0.025  Sum_probs=19.0

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      -|+|+|.+++|||||...+..
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~   23 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSS   23 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEE
T ss_pred             eEEEECCCCCCHHHHHHHHhC
Confidence            489999999999999999865

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.54  E-value=1.5e-05  Score=43.24  Aligned_cols=20  Identities=10%  Similarity=0.086  Sum_probs=18.6

Q ss_pred             eeEEcCCCCcHHHHHHHHhc
Q 037564            5 KPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~   24 (93)
                      |+|.|.+++|||||...+..
T Consensus         4 VaivG~~nvGKSTLin~L~~   23 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTR   23 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCS
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            89999999999999999875

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.54  E-value=2.7e-05  Score=42.17  Aligned_cols=22  Identities=9%  Similarity=0.003  Sum_probs=19.8

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|+++|.+|+|||||...+...
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~   23 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGK   23 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4889999999999999999864

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.53  E-value=2.5e-05  Score=42.24  Aligned_cols=22  Identities=14%  Similarity=0.083  Sum_probs=19.1

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.|+|.+|+|||+|..++.++
T Consensus         4 KivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           4 KLVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3678899999999999998764

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.53  E-value=2.8e-05  Score=41.79  Aligned_cols=22  Identities=14%  Similarity=0.146  Sum_probs=19.1

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.++|.+|+|||+|..++..+
T Consensus         5 Ki~vvG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           5 KLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3678999999999999998764

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.52  E-value=3.4e-05  Score=42.40  Aligned_cols=21  Identities=10%  Similarity=0.156  Sum_probs=18.8

Q ss_pred             eeEEcCCCCcHHHHHHHHhcC
Q 037564            5 KPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      |.|+|.+|+|||||...+..+
T Consensus         9 ivvvG~~~vGKTsli~~l~~~   29 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFSDD   29 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHhhC
Confidence            678999999999999998864

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=2.6e-05  Score=42.45  Aligned_cols=22  Identities=14%  Similarity=0.107  Sum_probs=19.2

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.++|.+|+|||+|..++..+
T Consensus         7 KivviG~~~vGKTsli~~~~~~   28 (183)
T d1mh1a_           7 KCVVVGDGAVGKTCLLISYTTN   28 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3688999999999999998764

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=4.1e-05  Score=41.12  Aligned_cols=21  Identities=14%  Similarity=0.143  Sum_probs=18.7

Q ss_pred             eeEEcCCCCcHHHHHHHHhcC
Q 037564            5 KPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      |.++|.+|+|||+|+.++.+.
T Consensus         9 i~vvG~~~vGKTsli~~~~~~   29 (170)
T d2g6ba1           9 VMLVGDSGVGKTCLLVRFKDG   29 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999988664

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.51  E-value=2.2e-05  Score=48.62  Aligned_cols=21  Identities=10%  Similarity=0.088  Sum_probs=19.3

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      -|.+.||+|+|||.||+.++.
T Consensus        51 NILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          51 NILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            478899999999999999988

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.50  E-value=2.8e-05  Score=42.31  Aligned_cols=21  Identities=29%  Similarity=0.279  Sum_probs=18.7

Q ss_pred             eeEEcCCCCcHHHHHHHHhcC
Q 037564            5 KPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      |.++|.+|+|||||+..+.+.
T Consensus         5 v~vvG~~~vGKSSLi~~l~~~   25 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYVNK   25 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678999999999999998864

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.50  E-value=3.7e-05  Score=42.94  Aligned_cols=22  Identities=9%  Similarity=-0.056  Sum_probs=19.0

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ..+.++|++|+||||+|+.++.
T Consensus        25 h~lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          25 HALLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             SEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHH
Confidence            3578899999999999998765

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.50  E-value=3.5e-05  Score=41.57  Aligned_cols=20  Identities=5%  Similarity=0.052  Sum_probs=18.0

Q ss_pred             eeEEcCCCCcHHHHHHHHhc
Q 037564            5 KPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~   24 (93)
                      |.+.|.+|+|||||...+..
T Consensus         6 v~lvG~~~vGKTsLi~~~~~   25 (172)
T d2g3ya1           6 VVLIGEQGVGKSTLANIFAG   25 (172)
T ss_dssp             EEEECCTTSSHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            67899999999999998865

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.50  E-value=3e-05  Score=42.34  Aligned_cols=21  Identities=14%  Similarity=0.180  Sum_probs=18.8

Q ss_pred             eeEEcCCCCcHHHHHHHHhcC
Q 037564            5 KPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      |.|+|.+|+|||+|..++.++
T Consensus        12 i~lvG~~~vGKTsLi~r~~~~   32 (185)
T d2atxa1          12 CVVVGDGAVGKTCLLMSYAND   32 (185)
T ss_dssp             EEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhhC
Confidence            688999999999999998764

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.49  E-value=3.5e-05  Score=43.18  Aligned_cols=24  Identities=13%  Similarity=0.039  Sum_probs=20.8

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhcC
Q 037564            2 SGCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      ..++.|.|.+|+|||++|.+++.+
T Consensus        34 G~l~~i~G~~G~GKT~~~l~~a~~   57 (258)
T d2i1qa2          34 QSVTEFAGVFGSGKTQIMHQSCVN   57 (258)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHH
Confidence            357889999999999999998763

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.49  E-value=3e-05  Score=43.87  Aligned_cols=22  Identities=5%  Similarity=-0.209  Sum_probs=19.7

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+|+|+|..|+||||+|+.+.+
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998855

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=97.49  E-value=3.6e-05  Score=40.79  Aligned_cols=21  Identities=10%  Similarity=0.025  Sum_probs=18.7

Q ss_pred             eeEEcCCCCcHHHHHHHHhcC
Q 037564            5 KPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      |+++|.+++|||||..++...
T Consensus         4 I~lvG~~nvGKSsLin~l~~~   24 (161)
T d2gj8a1           4 VVIAGRPNAGKSSLLNALAGR   24 (161)
T ss_dssp             EEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999998753

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.48  E-value=3.4e-05  Score=42.19  Aligned_cols=18  Identities=17%  Similarity=0.231  Sum_probs=16.6

Q ss_pred             eeEEcCCCCcHHHHHHHH
Q 037564            5 KPILDSSSFDKTAFTADT   22 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~   22 (93)
                      |.+.|.+|+|||||..++
T Consensus         5 ivllG~~~vGKTsll~r~   22 (200)
T d1zcba2           5 ILLLGAGESGKSTFLKQM   22 (200)
T ss_dssp             EEEECSTTSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            578999999999999987

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=97.47  E-value=3.7e-05  Score=41.08  Aligned_cols=21  Identities=14%  Similarity=0.078  Sum_probs=18.5

Q ss_pred             eeEEcCCCCcHHHHHHHHhcC
Q 037564            5 KPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      |.+.|.+|+|||||..++...
T Consensus         5 i~i~G~~~~GKTsLl~~l~~~   25 (164)
T d1zd9a1           5 LTLVGLQYSGKTTFVNVIASG   25 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            678999999999999988664

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=97.46  E-value=4.9e-05  Score=40.84  Aligned_cols=21  Identities=19%  Similarity=0.208  Sum_probs=18.5

Q ss_pred             eeEEcCCCCcHHHHHHHHhcC
Q 037564            5 KPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      |.++|.+|+|||||..++.++
T Consensus         7 ivlvG~~~vGKTsli~~~~~~   27 (168)
T d1u8za_           7 VIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678999999999999998754

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.45  E-value=5.6e-05  Score=42.92  Aligned_cols=23  Identities=9%  Similarity=0.053  Sum_probs=20.1

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      +...+.|.+|+|||||...+..+
T Consensus        96 kt~~~~G~SGVGKSTLiN~L~~~  118 (225)
T d1u0la2          96 KISTMAGLSGVGKSSLLNAINPG  118 (225)
T ss_dssp             SEEEEECSTTSSHHHHHHHHSTT
T ss_pred             CeEEEECCCCCCHHHHHHhhcch
Confidence            46788999999999999999764

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=2.5e-05  Score=42.11  Aligned_cols=21  Identities=14%  Similarity=0.211  Sum_probs=17.4

Q ss_pred             eeEEcCCCCcHHHHHHHHhcC
Q 037564            5 KPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      |.++|.+|+|||||..++.++
T Consensus         6 i~vvG~~~vGKTsli~~~~~~   26 (170)
T d1i2ma_           6 LVLVGDGGTGKTTFVKRHLTG   26 (170)
T ss_dssp             EEEEECTTSSHHHHHHTTC--
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678899999999999987664

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=97.43  E-value=3.2e-05  Score=41.68  Aligned_cols=21  Identities=14%  Similarity=-0.032  Sum_probs=19.0

Q ss_pred             eeEEcCCCCcHHHHHHHHhcC
Q 037564            5 KPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      |.++|.+|+|||||..++.++
T Consensus        15 IvlvG~~~vGKTSli~rl~~~   35 (173)
T d1e0sa_          15 ILMLGLDAAGKTTILYKLKLG   35 (173)
T ss_dssp             EEEEEETTSSHHHHHHHTTCC
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            678999999999999999865

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.43  E-value=4.4e-05  Score=41.46  Aligned_cols=20  Identities=10%  Similarity=0.049  Sum_probs=17.8

Q ss_pred             eeEEcCCCCcHHHHHHHHhc
Q 037564            5 KPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~   24 (93)
                      |.+.|.+|+|||+|..++..
T Consensus         5 ivllG~~~vGKTsl~~r~~~   24 (195)
T d1svsa1           5 LLLLGAGESGKSTIVKQMKI   24 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhh
Confidence            67899999999999998754

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.42  E-value=4e-05  Score=41.65  Aligned_cols=21  Identities=19%  Similarity=0.113  Sum_probs=18.7

Q ss_pred             eeEEcCCCCcHHHHHHHHhcC
Q 037564            5 KPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      |.+.|.+|+|||+|...+.+.
T Consensus         5 ivliG~~~vGKTsli~r~~~~   25 (179)
T d1m7ba_           5 IVVVGDSQCGKTALLHVFAKD   25 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678999999999999988774

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.42  E-value=4.2e-05  Score=41.21  Aligned_cols=21  Identities=14%  Similarity=0.192  Sum_probs=18.6

Q ss_pred             eeEEcCCCCcHHHHHHHHhcC
Q 037564            5 KPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      |.++|.+|+|||||..++.++
T Consensus         9 I~vvG~~~vGKSSli~~~~~~   29 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRYVTN   29 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            679999999999999887764

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=4.4e-05  Score=41.81  Aligned_cols=21  Identities=14%  Similarity=0.156  Sum_probs=18.5

Q ss_pred             eeEEcCCCCcHHHHHHHHhcC
Q 037564            5 KPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      |.+.|.+|+|||+|..++..+
T Consensus         6 vvllG~~~vGKTSli~r~~~~   26 (191)
T d2ngra_           6 CVVVGDGAVGKTCLLISYTTN   26 (191)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678999999999999988764

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.41  E-value=5.8e-05  Score=40.56  Aligned_cols=21  Identities=14%  Similarity=0.298  Sum_probs=18.6

Q ss_pred             eeEEcCCCCcHHHHHHHHhcC
Q 037564            5 KPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      |.++|.+|+|||||..++.++
T Consensus         7 i~lvG~~~vGKTsll~~~~~~   27 (169)
T d1x1ra1           7 LVVVGDGGVGKSALTIQFFQK   27 (169)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            567899999999999998864

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=97.41  E-value=0.00018  Score=41.35  Aligned_cols=50  Identities=10%  Similarity=0.018  Sum_probs=30.4

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHHHH
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIK   55 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~il~   55 (93)
                      .++.|.|.+|+|||+++.++..+......+ .+.|++..  .+..++...++.
T Consensus        36 ~l~vi~G~~G~GKT~~~~~la~~~a~~~g~-~v~~~s~E--~~~~~~~~r~~~   85 (277)
T d1cr2a_          36 EVIMVTSGSGMGKSTFVRQQALQWGTAMGK-KVGLAMLE--ESVEETAEDLIG   85 (277)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHHTSCC-CEEEEESS--SCHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhhhhhccc-ceeEeeec--cchhhHHhHHHH
Confidence            478899999999999999887632122223 34455543  334444444443

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=97.41  E-value=3.1e-05  Score=42.01  Aligned_cols=21  Identities=19%  Similarity=-0.023  Sum_probs=18.7

Q ss_pred             eeEEcCCCCcHHHHHHHHhcC
Q 037564            5 KPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      |.++|.+|+|||||..++...
T Consensus        20 I~lvG~~~vGKTsLi~~l~~~   40 (182)
T d1moza_          20 ILILGLDGAGKTTILYRLQIG   40 (182)
T ss_dssp             EEEEEETTSSHHHHHHHTCCS
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            678999999999999998764

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.41  E-value=5.7e-05  Score=42.08  Aligned_cols=22  Identities=18%  Similarity=0.146  Sum_probs=19.0

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .++.|.|.+|+|||++|.+++.
T Consensus        27 ~~~~I~G~~G~GKT~la~~~~~   48 (242)
T d1tf7a1          27 RSTLVSGTSGTGKTLFSIQFLY   48 (242)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHH
Confidence            5788999999999999987654

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=4.6e-05  Score=41.20  Aligned_cols=21  Identities=14%  Similarity=0.173  Sum_probs=18.7

Q ss_pred             eeEEcCCCCcHHHHHHHHhcC
Q 037564            5 KPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      |.++|.+|+|||||..++.++
T Consensus        10 i~vvG~~~vGKTsli~~l~~~   30 (177)
T d1x3sa1          10 ILIIGESGVGKSSLLLRFTDD   30 (177)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678999999999999988754

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.40  E-value=5.5e-05  Score=41.01  Aligned_cols=22  Identities=14%  Similarity=0.176  Sum_probs=19.3

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|+|.|.+|+|||||...+...
T Consensus        10 kV~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2          10 KVAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            3789999999999999988763

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=97.38  E-value=4.2e-05  Score=46.24  Aligned_cols=21  Identities=10%  Similarity=0.048  Sum_probs=18.4

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      -+...|+.|+|||.||+.++.
T Consensus        70 niLfiGPTGvGKTElAk~LA~   90 (364)
T d1um8a_          70 NILLIGPTGSGKTLMAQTLAK   90 (364)
T ss_dssp             CEEEECCTTSSHHHHHHHHHH
T ss_pred             ceeeeCCCCccHHHHHHHHHh
Confidence            367789999999999999876

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=97.38  E-value=5.4e-05  Score=41.86  Aligned_cols=23  Identities=13%  Similarity=0.030  Sum_probs=19.6

Q ss_pred             CceeeEEcCC-CCcHHHHHHHHhc
Q 037564            2 SGCKPILDSS-SFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~-G~GKTtLa~~~~~   24 (93)
                      ++.+.|.|-+ |+||||++..+..
T Consensus         1 ~~~~~i~gt~~GVGKTtvs~~La~   24 (224)
T d1byia_           1 SKRYFVTGTDTEVGKTVASCALLQ   24 (224)
T ss_dssp             CEEEEEEESSTTSCHHHHHHHHHH
T ss_pred             CceEEEEECCCCccHHHHHHHHHH
Confidence            4568899998 9999998888777

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=6.5e-05  Score=40.78  Aligned_cols=21  Identities=10%  Similarity=0.113  Sum_probs=18.7

Q ss_pred             eeEEcCCCCcHHHHHHHHhcC
Q 037564            5 KPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      |.+.|.+|+|||||..++.+.
T Consensus         8 i~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           8 LGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             EEEECCTTTTHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            678999999999999988764

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=97.34  E-value=3e-05  Score=41.81  Aligned_cols=23  Identities=13%  Similarity=-0.071  Sum_probs=20.1

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .-|+++|.+++|||||.+++...
T Consensus        17 ~~I~lvG~~NvGKSSL~n~L~~~   39 (188)
T d1puia_          17 IEVAFAGRSNAGKSSALNTLTNQ   39 (188)
T ss_dssp             EEEEEEECTTSSHHHHHTTTCCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            45899999999999999988663

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.33  E-value=5.1e-05  Score=42.85  Aligned_cols=23  Identities=13%  Similarity=0.062  Sum_probs=20.1

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .+..|.|.-|+|||||.+++...
T Consensus         4 Pv~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           4 AVTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHS
T ss_pred             CEEEEeeCCCCCHHHHHHHHHhc
Confidence            36788999999999999998874

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=97.32  E-value=3.1e-05  Score=45.96  Aligned_cols=19  Identities=5%  Similarity=-0.025  Sum_probs=17.2

Q ss_pred             eeEEcCCCCcHHHHHHHHh
Q 037564            5 KPILDSSSFDKTAFTADTY   23 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~   23 (93)
                      +.+.|.+|+|||+||+.+.
T Consensus        31 vLl~G~pG~GKT~lar~~~   49 (333)
T d1g8pa_          31 VLVFGDRGTGKSTAVRALA   49 (333)
T ss_dssp             EEEECCGGGCTTHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHH
Confidence            6789999999999999875

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=97.32  E-value=9.2e-05  Score=40.53  Aligned_cols=22  Identities=18%  Similarity=0.087  Sum_probs=19.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .-+.|.|.+|+||||+|-.+..
T Consensus        16 ~gvli~G~sG~GKS~lal~l~~   37 (177)
T d1knxa2          16 VGVLLTGRSGIGKSECALDLIN   37 (177)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHH
Confidence            4578899999999999998776

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=97.31  E-value=8.4e-05  Score=44.83  Aligned_cols=23  Identities=17%  Similarity=0.039  Sum_probs=18.7

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .++..|+|++|+||||++..+..
T Consensus       163 ~~~~vI~G~pGTGKTt~i~~~l~  185 (359)
T d1w36d1         163 RRISVISGGPGTGKTTTVAKLLA  185 (359)
T ss_dssp             BSEEEEECCTTSTHHHHHHHHHH
T ss_pred             CCeEEEEcCCCCCceehHHHHHH
Confidence            46889999999999998765443

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=97.30  E-value=8.8e-05  Score=42.52  Aligned_cols=22  Identities=5%  Similarity=0.074  Sum_probs=18.7

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+..|.|.+|+||||++.+++.
T Consensus        30 ~~~~i~G~~G~GKS~l~l~la~   51 (274)
T d1nlfa_          30 TVGALVSPGGAGKSMLALQLAA   51 (274)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHH
Confidence            4677899999999999987765

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=97.29  E-value=9.1e-05  Score=40.52  Aligned_cols=22  Identities=14%  Similarity=-0.019  Sum_probs=19.3

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +-|.|.|.+|+||||+|-.+..
T Consensus        15 ~gvl~~G~sG~GKStlal~l~~   36 (176)
T d1kkma_          15 LGVLITGDSGVGKSETALELVQ   36 (176)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEEeCCCCCHHHHHHHHHH
Confidence            4578899999999999998776

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.29  E-value=7.7e-05  Score=40.60  Aligned_cols=20  Identities=15%  Similarity=0.150  Sum_probs=17.9

Q ss_pred             eeEEcCCCCcHHHHHHHHhc
Q 037564            5 KPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~   24 (93)
                      |.+.|.+|+|||+|..++..
T Consensus         5 iv~lG~~~vGKTsll~r~~~   24 (200)
T d2bcjq2           5 LLLLGTGESGKSTFIKQMRI   24 (200)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            67899999999999998855

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=97.28  E-value=0.0003  Score=36.30  Aligned_cols=50  Identities=8%  Similarity=-0.124  Sum_probs=30.4

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHHHHhhC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSVM   58 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~il~~l~   58 (93)
                      ++..|+++.|+|||+++-..+.      .....+.+.+....-..+..+.+.+.+.
T Consensus         9 ~~~ll~apTGsGKT~~~~~~~~------~~~~~vli~~P~~~l~~q~~~~~~~~~~   58 (136)
T d1a1va1           9 QVAHLHAPTGSGKSTKVPAAYA------AQGYKVLVLNPSVAATLGFGAYMSKAHG   58 (136)
T ss_dssp             EEEEEECCTTSCTTTHHHHHHH------TTTCCEEEEESCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEEeCCCCCHHHHHHHHHH------HcCCcEEEEcChHHHHHHHHHHHHHHhh
Confidence            4567899999999998876654      2233455555544344444444444443

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.27  E-value=8.5e-05  Score=41.71  Aligned_cols=21  Identities=10%  Similarity=0.017  Sum_probs=18.3

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      -|.+.|.+|+|||||.+++..
T Consensus         8 KilllG~~~vGKTsll~~~~~   28 (221)
T d1azta2           8 RLLLLGAGESGKSTIVKQMRI   28 (221)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            478999999999999998753

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.26  E-value=4.3e-05  Score=41.18  Aligned_cols=21  Identities=14%  Similarity=0.097  Sum_probs=8.0

Q ss_pred             eeEEcCCCCcHHHHHHHHhcC
Q 037564            5 KPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      |.++|.+|+|||||..++..+
T Consensus         9 i~vvG~~~vGKTsLi~~l~~~   29 (173)
T d2fu5c1           9 LLLIGDSGVGKTCVLFRFSED   29 (173)
T ss_dssp             EEEECCCCC------------
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678899999999999987764

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=97.25  E-value=9.7e-05  Score=39.73  Aligned_cols=22  Identities=14%  Similarity=0.027  Sum_probs=20.0

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      +|.+.|.=|+||||+++.+++.
T Consensus        35 ii~L~G~LGaGKTtfvr~~~~~   56 (158)
T d1htwa_          35 MVYLNGDLGAGKTTLTRGMLQG   56 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEecCCCccHHHHHHHHHhh
Confidence            7889999999999999998874

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=97.24  E-value=0.00023  Score=42.50  Aligned_cols=21  Identities=5%  Similarity=-0.208  Sum_probs=18.9

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .|.|-|+-|+||||+++.+.+
T Consensus         8 rI~iEG~iGsGKSTl~~~L~~   28 (333)
T d1p6xa_           8 RIYLDGVYGIGKSTTGRVMAS   28 (333)
T ss_dssp             EEEEECSTTSSHHHHHHHHHS
T ss_pred             EEEEECCccCCHHHHHHHHHH
Confidence            467789999999999999988

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=97.15  E-value=0.00016  Score=39.32  Aligned_cols=22  Identities=14%  Similarity=0.019  Sum_probs=18.9

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .-|.|.|.+|+||||+|-.+..
T Consensus        16 ~gvli~G~sg~GKS~la~~l~~   37 (169)
T d1ko7a2          16 VGVLITGDSGIGKSETALELIK   37 (169)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEEeCCCCCHHHHHHHHHH
Confidence            4578899999999999988766

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=97.13  E-value=0.00014  Score=43.25  Aligned_cols=21  Identities=10%  Similarity=0.101  Sum_probs=19.2

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      -|.|.|..|+||||+.+.++.
T Consensus       168 nili~G~tgSGKTT~l~al~~  188 (323)
T d1g6oa_         168 NVIVCGGTGSGKTTYIKSIME  188 (323)
T ss_dssp             CEEEEESTTSSHHHHHHHHGG
T ss_pred             CEEEEeeccccchHHHHHHhh
Confidence            478999999999999999887

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.12  E-value=2.9e-05  Score=41.13  Aligned_cols=20  Identities=15%  Similarity=0.205  Sum_probs=18.4

Q ss_pred             eeEEcCCCCcHHHHHHHHhc
Q 037564            5 KPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~   24 (93)
                      |++.|.+++|||||...+..
T Consensus         3 I~liG~~n~GKSSLin~l~g   22 (160)
T d1xzpa2           3 MVIVGKPNVGKSTLLNRLLN   22 (160)
T ss_dssp             EEEECCHHHHTCHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            78999999999999999875

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.05  E-value=6.4e-05  Score=42.81  Aligned_cols=23  Identities=9%  Similarity=0.046  Sum_probs=19.4

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      +...+.|.+|+|||||...+..+
T Consensus        98 ~~~vl~G~SGVGKSSLiN~L~~~  120 (231)
T d1t9ha2          98 KTTVFAGQSGVGKSSLLNAISPE  120 (231)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC-
T ss_pred             ceEEEECCCCccHHHHHHhhccH
Confidence            45678899999999999998875

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.01  E-value=0.0002  Score=40.99  Aligned_cols=21  Identities=14%  Similarity=-0.061  Sum_probs=18.9

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      -|.|.|..|+|||++|+.++.
T Consensus        25 pvlI~Ge~GtGK~~~A~~ih~   45 (247)
T d1ny5a2          25 PVLITGESGVGKEVVARLIHK   45 (247)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEECCCCcCHHHHHHHHHH
Confidence            478899999999999999875

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=96.99  E-value=3.2e-05  Score=41.97  Aligned_cols=21  Identities=10%  Similarity=-0.039  Sum_probs=17.8

Q ss_pred             ceeeEEcCCCCcHHHHHHHHh
Q 037564            3 GCKPILDSSSFDKTAFTADTY   23 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~   23 (93)
                      ++..|+|+.|+||||+..++.
T Consensus        25 ~~tvi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          25 LVTTLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHHHHSCCSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHH
Confidence            356788999999999998875

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.95  E-value=0.00028  Score=40.53  Aligned_cols=22  Identities=5%  Similarity=0.093  Sum_probs=19.8

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|.+.|.+|+|||||...++..
T Consensus        34 ~I~LvG~tg~GKSSliN~ilg~   55 (257)
T d1h65a_          34 TILVMGKGGVGKSSTVNSIIGE   55 (257)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            4789999999999999999874

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=96.91  E-value=0.00032  Score=41.83  Aligned_cols=20  Identities=10%  Similarity=0.014  Sum_probs=18.6

Q ss_pred             eeEEcCCCCcHHHHHHHHhc
Q 037564            5 KPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~   24 (93)
                      |.|-|.-|+||||+++.+.+
T Consensus         8 I~IEG~iGsGKSTl~~~L~~   27 (331)
T d1osna_           8 IYLDGAYGIGKTTAAEEFLH   27 (331)
T ss_dssp             EEEEESSSSCTTHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78889999999999999987

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.90  E-value=0.00032  Score=40.86  Aligned_cols=22  Identities=18%  Similarity=-0.049  Sum_probs=19.6

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      |-|+|+|-.|.|||||+.+++.
T Consensus         7 Rni~i~gh~~~GKTtL~e~ll~   28 (276)
T d2bv3a2           7 RNIGIAAHIDAGKTTTTERILY   28 (276)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHH
Confidence            4589999999999999999864

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=96.87  E-value=0.00035  Score=40.50  Aligned_cols=21  Identities=14%  Similarity=0.154  Sum_probs=19.3

Q ss_pred             ceeeEEcCCCCcHHHHHHHHh
Q 037564            3 GCKPILDSSSFDKTAFTADTY   23 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~   23 (93)
                      |-|+|.|-.|.|||||+..+.
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll   23 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALL   23 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHH
T ss_pred             eEEEEEcCCCCcHHHHHHHHH
Confidence            678999999999999999885

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=96.85  E-value=0.0003  Score=41.96  Aligned_cols=20  Identities=20%  Similarity=-0.042  Sum_probs=18.3

Q ss_pred             eeEEcCCCCcHHHHHHHHhc
Q 037564            5 KPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~   24 (93)
                      |.|-|.-|+||||+++.+.+
T Consensus         7 I~IEG~iGsGKTTl~~~La~   26 (329)
T d1e2ka_           7 VYIDGPHGMGKTTTTQLLVA   26 (329)
T ss_dssp             EEECSCTTSSHHHHHHHHTC
T ss_pred             EEEECCcCCCHHHHHHHHHH
Confidence            77889999999999999876

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=96.84  E-value=0.00041  Score=37.49  Aligned_cols=21  Identities=14%  Similarity=0.055  Sum_probs=19.1

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      -|+|.|.+.+|||||..++..
T Consensus         7 nIaiiG~~naGKSTL~n~L~~   27 (179)
T d1wb1a4           7 NLGIFGHIDHGKTTLSKVLTE   27 (179)
T ss_dssp             EEEEEECTTSSHHHHHHHHHT
T ss_pred             EEEEEeCCCCcHHHHHHHHHH
Confidence            389999999999999999875

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.79  E-value=0.0005  Score=38.64  Aligned_cols=22  Identities=14%  Similarity=0.117  Sum_probs=19.7

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+|+|.|-...|||||...+..
T Consensus         6 p~IaIiGh~d~GKSTL~~~L~~   27 (227)
T d1g7sa4           6 PIVSVLGHVDHGKTTLLDHIRG   27 (227)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEeCCCccHHHHHHHHHh
Confidence            5699999999999999998864

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.79  E-value=0.0046  Score=34.03  Aligned_cols=22  Identities=5%  Similarity=-0.238  Sum_probs=19.3

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .-+.++|++|+|||++|..+.+
T Consensus        16 ~~~l~~G~~g~gk~~~a~~l~~   37 (198)
T d2gnoa2          16 ISILINGEDLSYPREVSLELPE   37 (198)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            3567899999999999998887

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=96.69  E-value=0.00052  Score=39.96  Aligned_cols=18  Identities=22%  Similarity=0.174  Sum_probs=14.2

Q ss_pred             ceeeEEcCCCCcHHHHHH
Q 037564            3 GCKPILDSSSFDKTAFTA   20 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~   20 (93)
                      +.+.|.|.+|+||||.+.
T Consensus        25 g~~lV~g~aGSGKTt~l~   42 (318)
T d1pjra1          25 GPLLIMAGAGSGKTRVLT   42 (318)
T ss_dssp             SCEEEEECTTSCHHHHHH
T ss_pred             CCEEEEecCCccHHHHHH
Confidence            346788999999997554

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=96.69  E-value=0.00048  Score=39.76  Aligned_cols=18  Identities=22%  Similarity=0.180  Sum_probs=14.0

Q ss_pred             ceeeEEcCCCCcHHHHHH
Q 037564            3 GCKPILDSSSFDKTAFTA   20 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~   20 (93)
                      +.+.|.|.+|+||||.+.
T Consensus        15 ~~~lI~g~aGTGKTt~l~   32 (306)
T d1uaaa1          15 GPCLVLAGAGSGKTRVIT   32 (306)
T ss_dssp             SEEEECCCTTSCHHHHHH
T ss_pred             CCEEEEeeCCccHHHHHH
Confidence            446788999999997543

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=96.37  E-value=0.0011  Score=40.29  Aligned_cols=23  Identities=9%  Similarity=0.021  Sum_probs=20.2

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .++|.+.|+.|+||||....+.+
T Consensus       158 ~GliLvtGpTGSGKSTTl~~~l~  180 (401)
T d1p9ra_         158 HGIILVTGPTGSGKSTTLYAGLQ  180 (401)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHH
T ss_pred             hceEEEEcCCCCCccHHHHHHhh
Confidence            47899999999999998887776

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.34  E-value=0.0012  Score=40.23  Aligned_cols=20  Identities=10%  Similarity=0.154  Sum_probs=18.6

Q ss_pred             eeEEcCCCCcHHHHHHHHhc
Q 037564            5 KPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~   24 (93)
                      |+|.|.+|+|||||...+..
T Consensus        59 Iai~G~~n~GKSSLiNaL~G   78 (400)
T d1tq4a_          59 VAVTGETGSGKSSFINTLRG   78 (400)
T ss_dssp             EEEEECTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            89999999999999999874

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.32  E-value=0.0015  Score=39.12  Aligned_cols=20  Identities=10%  Similarity=0.172  Sum_probs=17.8

Q ss_pred             ceeeEEcCCCCcHHHHHHHH
Q 037564            3 GCKPILDSSSFDKTAFTADT   22 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~   22 (93)
                      ++-.|+|+.|+|||++..++
T Consensus        26 ~l~~i~G~NGsGKS~ileAi   45 (427)
T d1w1wa_          26 NFTSIIGPNGSGKSNMMDAI   45 (427)
T ss_dssp             SEEEEECSTTSSHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHH
Confidence            56789999999999998886

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.30  E-value=0.0011  Score=38.25  Aligned_cols=20  Identities=10%  Similarity=0.134  Sum_probs=17.3

Q ss_pred             ceeeEEcCCCCcHHHHHHHH
Q 037564            3 GCKPILDSSSFDKTAFTADT   22 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~   22 (93)
                      ++-.|+|+.|+|||++..++
T Consensus        25 ~lnvlvG~NgsGKS~iL~Ai   44 (308)
T d1e69a_          25 RVTAIVGPNGSGKSNIIDAI   44 (308)
T ss_dssp             SEEEEECCTTTCSTHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHH
Confidence            47789999999999997765

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.18  E-value=0.0017  Score=37.66  Aligned_cols=23  Identities=9%  Similarity=-0.045  Sum_probs=20.8

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhcC
Q 037564            3 GCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      .||+|.|+.+.|||+|+..++..
T Consensus        33 ~vvsi~G~~~sGKS~llN~l~~~   55 (277)
T d1f5na2          33 VVVAIVGLYRTGKSYLMNKLAGK   55 (277)
T ss_dssp             EEEEEEEBTTSSHHHHHHHHTTC
T ss_pred             EEEEEECCCCCCHHHHHHHHcCC
Confidence            37899999999999999999874

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=96.16  E-value=0.0022  Score=37.01  Aligned_cols=25  Identities=8%  Similarity=-0.041  Sum_probs=21.0

Q ss_pred             CCceeeEEcCCCCcHHHHHHHHhcC
Q 037564            1 FSGCKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         1 ~~~~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      |+--|+|+|.+.+|||||-..+-..
T Consensus         1 m~~~~GivG~Pn~GKSTlf~~lt~~   25 (278)
T d1jala1           1 MGFKCGIVGLPNVGKSTLFNALTKA   25 (278)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CCceEEEECCCCCCHHHHHHHHHCC
Confidence            4556899999999999999987753

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.12  E-value=0.002  Score=35.60  Aligned_cols=19  Identities=21%  Similarity=0.142  Sum_probs=17.6

Q ss_pred             eeEEcCCCCcHHHHHHHHh
Q 037564            5 KPILDSSSFDKTAFTADTY   23 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~   23 (93)
                      |+|.|-.+.|||||+.++.
T Consensus         6 i~iiGhvd~GKSTL~~~Ll   24 (204)
T d2c78a3           6 VGTIGHVDHGKTTLTAALT   24 (204)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHH
Confidence            7899999999999999985

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=96.03  E-value=0.0023  Score=36.86  Aligned_cols=22  Identities=9%  Similarity=0.092  Sum_probs=19.9

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|+|+|++-+|||||...+...
T Consensus       114 ~v~vvG~PNvGKSsliN~L~~~  135 (273)
T d1puja_         114 RALIIGIPNVGKSTLINRLAKK  135 (273)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEEecCccchhhhhhhhhcc
Confidence            3789999999999999999874

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=96.03  E-value=0.0015  Score=36.32  Aligned_cols=22  Identities=14%  Similarity=0.220  Sum_probs=19.1

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +.+.++|+++.|||++|..+.+
T Consensus        54 n~i~~~GP~~TGKS~f~~sl~~   75 (205)
T d1tuea_          54 NCLVFCGPANTGKSYFGMSFIH   75 (205)
T ss_dssp             SEEEEESCGGGCHHHHHHHHHH
T ss_pred             eEEEEECCCCccHHHHHHHHHH
Confidence            4688999999999999987665

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.96  E-value=0.0027  Score=32.47  Aligned_cols=21  Identities=5%  Similarity=0.056  Sum_probs=18.7

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .|.+.|.+|+||+|||+.+..
T Consensus         8 ~i~~tg~~~~gk~~ia~al~~   28 (122)
T d1g8fa3           8 SIVLGNSLTVSREQLSIALLS   28 (122)
T ss_dssp             EEEECTTCCSCHHHHHHHHHH
T ss_pred             EEEEeCCCCCCHHHHHHHHHH
Confidence            577889999999999999866

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=95.90  E-value=0.0025  Score=37.12  Aligned_cols=22  Identities=14%  Similarity=0.155  Sum_probs=19.5

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcC
Q 037564            4 CKPILDSSSFDKTAFTADTYNN   25 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~   25 (93)
                      -|+|+|.+.+|||||-..+...
T Consensus        12 kiGivG~Pn~GKSTlfnalT~~   33 (296)
T d1ni3a1          12 KTGIVGMPNVGKSTFFRAITKS   33 (296)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            4899999999999999988853

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.85  E-value=0.0027  Score=37.13  Aligned_cols=20  Identities=10%  Similarity=0.160  Sum_probs=18.4

Q ss_pred             eeEEcCCCCcHHHHHHHHhc
Q 037564            5 KPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~   24 (93)
                      |+|+|.+.+|||||-..+-.
T Consensus         3 v~lvG~pn~GKStlfn~lt~   22 (319)
T d1wxqa1           3 IGVVGKPNVGKSTFFSAATL   22 (319)
T ss_dssp             EEEEECTTSSHHHHHHHHHC
T ss_pred             EeEECCCCCCHHHHHHHHHC
Confidence            79999999999999999855

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=95.84  E-value=0.0031  Score=36.36  Aligned_cols=22  Identities=9%  Similarity=0.058  Sum_probs=18.9

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ..+.++|+|+.|||+++..+.+
T Consensus       105 n~~~l~G~~~tGKS~f~~~i~~  126 (267)
T d1u0ja_         105 NTIWLFGPATTGKTNIAEAIAH  126 (267)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHH
Confidence            3678899999999999988765

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=95.65  E-value=0.0032  Score=37.15  Aligned_cols=17  Identities=18%  Similarity=0.192  Sum_probs=14.3

Q ss_pred             eeeEEcCCCCcHHHHHH
Q 037564            4 CKPILDSSSFDKTAFTA   20 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~   20 (93)
                      +-.+.|.+|.|||||..
T Consensus        16 ~alfFGLSGTGKTTLs~   32 (313)
T d2olra1          16 VAVFFGLSGTGKTTLST   32 (313)
T ss_dssp             EEEEECSTTSSHHHHHC
T ss_pred             EEEEEccCCCCccccee
Confidence            44578999999999985

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=95.64  E-value=0.0037  Score=37.78  Aligned_cols=20  Identities=5%  Similarity=-0.007  Sum_probs=16.8

Q ss_pred             eeEEcCCCCcHHHHHHHHhc
Q 037564            5 KPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +.|.|.+|+|||++++.+..
T Consensus        53 ~~I~G~tGsGKT~~l~~li~   72 (433)
T d1e9ra_          53 LLVNGATGTGKSVLLRELAY   72 (433)
T ss_dssp             EEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHHH
Confidence            78999999999998776554

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=95.57  E-value=0.0035  Score=37.10  Aligned_cols=18  Identities=22%  Similarity=0.268  Sum_probs=14.8

Q ss_pred             eeeEEcCCCCcHHHHHHH
Q 037564            4 CKPILDSSSFDKTAFTAD   21 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~   21 (93)
                      +-.+.|.+|.|||||...
T Consensus        16 valffGLSGTGKTTLs~~   33 (318)
T d1j3ba1          16 VAVFFGLSGTGKTTLSTD   33 (318)
T ss_dssp             EEEEEECTTSCHHHHTCB
T ss_pred             EEEEEccCCCCccccccC
Confidence            556789999999998753

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=95.43  E-value=0.0043  Score=36.80  Aligned_cols=17  Identities=24%  Similarity=0.237  Sum_probs=14.3

Q ss_pred             eeeEEcCCCCcHHHHHH
Q 037564            4 CKPILDSSSFDKTAFTA   20 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~   20 (93)
                      +-.+.|.+|.|||||..
T Consensus        16 ~alfFGLSGTGKTTLs~   32 (323)
T d1ii2a1          16 VTVFFGLSGTGKTTLSA   32 (323)
T ss_dssp             EEEEECCTTSSHHHHHC
T ss_pred             EEEEEccCCCCccccee
Confidence            44578999999999984

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.10  E-value=0.0099  Score=33.54  Aligned_cols=22  Identities=14%  Similarity=-0.022  Sum_probs=19.1

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +++.|.|+...||||+.+.+.-
T Consensus        42 ~~~iiTGpN~~GKSt~lk~i~l   63 (234)
T d1wb9a2          42 RMLIITGPNMGGKSTYMRQTAL   63 (234)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEeccCchhhHHHHHHHHH
Confidence            6788999999999999987654

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.98  E-value=0.0059  Score=36.44  Aligned_cols=21  Identities=10%  Similarity=0.140  Sum_probs=18.9

Q ss_pred             ceeeEEcCCCCcHHHHHHHHh
Q 037564            3 GCKPILDSSSFDKTAFTADTY   23 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~   23 (93)
                      |-|+|.|-.|.|||||+..+.
T Consensus        18 RNI~iiGhvd~GKTTL~d~Ll   38 (341)
T d1n0ua2          18 RNMSVIAHVDHGKSTLTDSLV   38 (341)
T ss_dssp             EEEEEECCGGGTHHHHHHHHH
T ss_pred             cEEEEEeCCCCcHHHHHHHHH
Confidence            458999999999999999886

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.91  E-value=0.03  Score=30.36  Aligned_cols=21  Identities=5%  Similarity=-0.031  Sum_probs=18.6

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ++.|.|...+|||..|.++..
T Consensus         1 iiLVtGGarSGKS~~AE~l~~   21 (180)
T d1c9ka_           1 MILVTGGARSGKSRHAEALIG   21 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHHC
T ss_pred             CEEEECCCCccHHHHHHHHHh
Confidence            468999999999999998875

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=94.69  E-value=0.013  Score=32.15  Aligned_cols=20  Identities=20%  Similarity=0.160  Sum_probs=17.7

Q ss_pred             eeEEcCCCCcHHHHHHHHhc
Q 037564            5 KPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~   24 (93)
                      |+|.|=...|||||+.++..
T Consensus         6 i~iiGHvd~GKSTL~~~l~~   25 (196)
T d1d2ea3           6 VGTIGHVDHGKTTLTAAITK   25 (196)
T ss_dssp             EEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHHH
Confidence            78999999999999998753

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=94.53  E-value=0.014  Score=31.64  Aligned_cols=20  Identities=15%  Similarity=0.124  Sum_probs=17.5

Q ss_pred             eeEEcCCCCcHHHHHHHHhc
Q 037564            5 KPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~   24 (93)
                      |+|.|-...|||||..++..
T Consensus         8 IaiiGhvd~GKSTL~~~L~g   27 (195)
T d1kk1a3           8 IGMVGHVDHGKTTLTKALTG   27 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHT
T ss_pred             EEEEeccCCcHHHHHHHHHh
Confidence            68899888999999999864

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=94.52  E-value=0.012  Score=38.11  Aligned_cols=22  Identities=23%  Similarity=0.209  Sum_probs=19.6

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ..|.|.|.+|+|||+-++.+.+
T Consensus        87 QsIiisGeSGsGKTe~~k~il~  108 (684)
T d1lkxa_          87 QCVIISGESGAGKTEASKKIMQ  108 (684)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Confidence            4688999999999999998876

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=94.44  E-value=0.013  Score=38.17  Aligned_cols=22  Identities=23%  Similarity=0.052  Sum_probs=19.2

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ..|.|.|.+|+|||.-++.+.+
T Consensus       126 QsIiisGeSGaGKTe~~k~il~  147 (712)
T d1d0xa2         126 QSLLITGESGAGKTENTKKVIQ  147 (712)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEeCCCCCCHHHHHHHHHH
Confidence            4789999999999998888765

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=94.25  E-value=0.015  Score=37.83  Aligned_cols=22  Identities=18%  Similarity=-0.025  Sum_probs=19.6

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ..|.|.|.+|.|||+-++.+.+
T Consensus        92 Q~IiisGeSGaGKTe~~k~il~  113 (710)
T d1br2a2          92 QSILCTGESGAGKTENTKKVIQ  113 (710)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHH
Confidence            4688999999999999888876

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=94.21  E-value=0.02  Score=31.30  Aligned_cols=20  Identities=10%  Similarity=0.107  Sum_probs=17.9

Q ss_pred             eeEEcCCCCcHHHHHHHHhc
Q 037564            5 KPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~   24 (93)
                      |+|.|-...|||||+..+..
T Consensus        11 i~iiGhVd~GKSTL~~~L~~   30 (205)
T d2qn6a3          11 IGVVGHVDHGKTTLVQAITG   30 (205)
T ss_dssp             EEEECSTTSSHHHHHHHHHS
T ss_pred             EEEEEccCCcHHHHHHHHHh
Confidence            78999888999999999874

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=94.11  E-value=0.021  Score=31.93  Aligned_cols=22  Identities=18%  Similarity=0.045  Sum_probs=18.6

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +++.|.|+...||||+.+.+.-
T Consensus        36 ~~~iiTGpN~~GKSt~lk~i~l   57 (224)
T d1ewqa2          36 ELVLITGPNMAGKSTFLRQTAL   57 (224)
T ss_dssp             CEEEEESCSSSSHHHHHHHHHH
T ss_pred             cEEEEECCCccccchhhhhhHH
Confidence            4678999999999999987654

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=94.09  E-value=0.019  Score=31.85  Aligned_cols=19  Identities=5%  Similarity=0.121  Sum_probs=16.9

Q ss_pred             eeEEcCCCCcHHHHHHHHh
Q 037564            5 KPILDSSSFDKTAFTADTY   23 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~   23 (93)
                      |++.|=.+.|||||+.++.
T Consensus         6 i~viGHVd~GKTTL~~~Ll   24 (224)
T d1jnya3           6 LIVIGHVDHGKSTLVGRLL   24 (224)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEEecCCCCHHHHHHHHH
Confidence            7889999999999998774

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=93.84  E-value=0.019  Score=37.79  Aligned_cols=22  Identities=23%  Similarity=0.042  Sum_probs=19.0

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ..|.|.|.+|+|||+-++.+.+
T Consensus       124 QsIiisGeSGaGKTe~~K~il~  145 (794)
T d2mysa2         124 QSILITGESGAGKTVNTKRVIQ  145 (794)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHH
Confidence            4688999999999998887766

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=93.72  E-value=0.01  Score=29.83  Aligned_cols=18  Identities=11%  Similarity=-0.265  Sum_probs=14.0

Q ss_pred             ceeeEEcCCCCcHHHHHH
Q 037564            3 GCKPILDSSSFDKTAFTA   20 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~   20 (93)
                      ....|.++.|.|||..|-
T Consensus         8 ~~~il~~~tGsGKT~~~~   25 (140)
T d1yksa1           8 MTTVLDFHPGAGKTRRFL   25 (140)
T ss_dssp             CEEEECCCTTSSTTTTHH
T ss_pred             CcEEEEcCCCCChhHHHH
Confidence            456778899999996664

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=93.58  E-value=0.028  Score=31.34  Aligned_cols=20  Identities=5%  Similarity=-0.077  Sum_probs=17.4

Q ss_pred             eeEEcCCCCcHHHHHHHHhc
Q 037564            5 KPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~   24 (93)
                      |+++|=...|||||+.++..
T Consensus        12 i~viGHVd~GKSTL~~~Ll~   31 (222)
T d1zunb3          12 FLTCGNVDDGKSTLIGRLLH   31 (222)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHH
Confidence            57889999999999998853

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=93.57  E-value=0.023  Score=37.40  Aligned_cols=22  Identities=23%  Similarity=-0.002  Sum_probs=19.1

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ..|.|.|.+|+|||.-++.+.+
T Consensus       122 Q~IiisGESGaGKTe~~K~il~  143 (789)
T d1kk8a2         122 QSCLITGESGAGKTENTKKVIM  143 (789)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHH
Confidence            4688999999999998887776

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=93.24  E-value=0.029  Score=36.55  Aligned_cols=22  Identities=14%  Similarity=-0.040  Sum_probs=18.9

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ..|.|.|.+|.|||+-++.+.+
T Consensus        95 Q~IiisGeSGsGKTe~~k~il~  116 (730)
T d1w7ja2          95 QSIIVSGESGAGKTVSAKYAMR  116 (730)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHH
Confidence            4688999999999998888765

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.97  E-value=0.038  Score=31.11  Aligned_cols=20  Identities=10%  Similarity=0.039  Sum_probs=17.4

Q ss_pred             eeEEcCCCCcHHHHHHHHhc
Q 037564            5 KPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~   24 (93)
                      |+|.|=.+.|||||+.+++.
T Consensus         9 i~iiGHvD~GKsTl~~~ll~   28 (239)
T d1f60a3           9 VVVIGHVDSGKSTTTGHLIY   28 (239)
T ss_dssp             EEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            68889999999999988853

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.80  E-value=0.015  Score=31.53  Aligned_cols=18  Identities=11%  Similarity=-0.012  Sum_probs=14.3

Q ss_pred             ceeeEEcCCCCcHHHHHH
Q 037564            3 GCKPILDSSSFDKTAFTA   20 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~   20 (93)
                      +-+.+.++.|.|||+.|.
T Consensus        41 ~~~il~apTGsGKT~~a~   58 (202)
T d2p6ra3          41 KNLLLAMPTAAGKTLLAE   58 (202)
T ss_dssp             SCEEEECSSHHHHHHHHH
T ss_pred             CCEEEEcCCCCchhHHHH
Confidence            345688999999998764

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.62  E-value=0.044  Score=31.42  Aligned_cols=22  Identities=9%  Similarity=0.157  Sum_probs=19.8

Q ss_pred             eeEEcCCCCcHHHHHHHHhcCc
Q 037564            5 KPILDSSSFDKTAFTADTYNNN   26 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~~~   26 (93)
                      |+|+|--+.|||||...+...+
T Consensus        29 ivvvG~~SsGKSsliNaLlg~~   50 (299)
T d2akab1          29 IAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             EEEEEBTTSCHHHHHHHHHTSC
T ss_pred             EEEEcCCCCCHHHHHHHHhCCC
Confidence            7899999999999999998753

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=92.24  E-value=0.058  Score=28.89  Aligned_cols=18  Identities=17%  Similarity=0.067  Sum_probs=13.3

Q ss_pred             eEEcCCCCcHHHHHHHHh
Q 037564            6 PILDSSSFDKTAFTADTY   23 (93)
Q Consensus         6 ~i~G~~G~GKTtLa~~~~   23 (93)
                      .++++.|.|||..+..+.
T Consensus        27 lv~~pTGsGKT~i~~~~~   44 (200)
T d1wp9a1          27 LIVLPTGLGKTLIAMMIA   44 (200)
T ss_dssp             EEECCTTSCHHHHHHHHH
T ss_pred             EEEeCCCCcHHHHHHHHH
Confidence            477899999998655443

>d1w36b1 c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta chain (RecB), N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V beta chain (RecB), N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.15  E-value=0.064  Score=32.29  Aligned_cols=21  Identities=29%  Similarity=0.078  Sum_probs=15.3

Q ss_pred             ceeeEEcCCCCcHHHH-HHHHh
Q 037564            3 GCKPILDSSSFDKTAF-TADTY   23 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtL-a~~~~   23 (93)
                      +...|.+.+|+|||+. +..+.
T Consensus        17 g~~lv~A~AGsGKT~~l~~r~~   38 (485)
T d1w36b1          17 GERLIEASAGTGKTFTIAALYL   38 (485)
T ss_dssp             SCEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEEcCchHHHHHHHHHHH
Confidence            5677888899999964 44443

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.03  E-value=0.085  Score=29.17  Aligned_cols=18  Identities=17%  Similarity=0.158  Sum_probs=13.7

Q ss_pred             eeeEEcCCCCcHHHHHHH
Q 037564            4 CKPILDSSSFDKTAFTAD   21 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~   21 (93)
                      -+.++++.|.|||+.+..
T Consensus        60 ~~~i~apTGsGKT~~~~~   77 (237)
T d1gkub1          60 SFAATAPTGVGKTSFGLA   77 (237)
T ss_dssp             CEECCCCBTSCSHHHHHH
T ss_pred             CEEEEecCCChHHHHHHH
Confidence            456778999999976544

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=91.74  E-value=0.037  Score=31.23  Aligned_cols=19  Identities=5%  Similarity=0.097  Sum_probs=17.0

Q ss_pred             eeEEcCCCCcHHHHHHHHh
Q 037564            5 KPILDSSSFDKTAFTADTY   23 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~   23 (93)
                      |+|.|=.+.|||||+.++.
T Consensus        27 i~iiGHVD~GKSTL~~~Ll   45 (245)
T d1r5ba3          27 IVFIGHVDAGKSTLGGNIL   45 (245)
T ss_dssp             EEEEECGGGTHHHHHHHHH
T ss_pred             EEEEeeCCCCHHHHHHHHH
Confidence            7888999999999999884

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=91.46  E-value=0.079  Score=30.46  Aligned_cols=23  Identities=13%  Similarity=0.127  Sum_probs=20.2

Q ss_pred             eeeEEcCCCCcHHHHHHHHhcCc
Q 037564            4 CKPILDSSSFDKTAFTADTYNNN   26 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~~~   26 (93)
                      -|+|+|.-+.|||||...+...+
T Consensus        26 ~ivVvG~~ssGKSSliNaLlG~~   48 (306)
T d1jwyb_          26 QIVVVGSQSSGKSSVLENIVGRD   48 (306)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTSC
T ss_pred             eEEEEeCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998753

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=91.32  E-value=0.083  Score=25.48  Aligned_cols=22  Identities=5%  Similarity=-0.073  Sum_probs=18.7

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +-|-+.|.+|+|-+.||+.+.+
T Consensus         9 ~~ihfiGigG~GMs~LA~~L~~   30 (96)
T d1p3da1           9 QQIHFIGIGGAGMSGIAEILLN   30 (96)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHH
T ss_pred             CEEEEEEECHHHHHHHHHHHHh
Confidence            3467889999999999998776

>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DNA repair protein RAD25
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=90.27  E-value=0.14  Score=27.77  Aligned_cols=19  Identities=21%  Similarity=0.118  Sum_probs=15.6

Q ss_pred             eEEcCCCCcHHHHHHHHhc
Q 037564            6 PILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         6 ~i~G~~G~GKTtLa~~~~~   24 (93)
                      .+.++.|.|||.+|-.+..
T Consensus        89 ll~~~tG~GKT~~a~~~~~  107 (206)
T d2fz4a1          89 CIVLPTGSGKTHVAMAAIN  107 (206)
T ss_dssp             EEEESSSTTHHHHHHHHHH
T ss_pred             EEEeCCCCCceehHHhHHH
Confidence            4677899999998887765

>d1kjwa2 c.37.1.1 (A:526-724) Guanylate kinase-like domain of Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.96  E-value=0.089  Score=28.63  Aligned_cols=27  Identities=19%  Similarity=0.138  Sum_probs=20.5

Q ss_pred             CCceeeEEcCCCCcHHHHHHHHhcCcccccCC
Q 037564            1 FSGCKPILDSSSFDKTAFTADTYNNNHVKFYF   32 (93)
Q Consensus         1 ~~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f   32 (93)
                      |.|-|.|.|+   ||+|+.++++.  +..+.|
T Consensus         8 ~~Rpivi~Gp---~K~ti~~~L~~--~~p~~f   34 (199)
T d1kjwa2           8 YARPIIILGP---TKDRANDDLLS--EFPDKF   34 (199)
T ss_dssp             SCCCEEEEST---THHHHHHHHHH--HCTTTE
T ss_pred             CCCCEEEECc---CHHHHHHHHHH--hCccce
Confidence            4678889986   49999999988  444444

>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecG helicase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=88.19  E-value=0.16  Score=29.03  Aligned_cols=31  Identities=10%  Similarity=-0.002  Sum_probs=20.3

Q ss_pred             eeEEcCCCCcHHHHHHHHhcCcccccCCCeeE
Q 037564            5 KPILDSSSFDKTAFTADTYNNNHVKFYFDCHA   36 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~   36 (93)
                      -.+.|--|+|||-+|-..... .+...+++.+
T Consensus       107 rLL~GdvGSGKT~Va~~a~~~-~~~~g~q~~~  137 (264)
T d1gm5a3         107 RLLQGDVGSGKTVVAQLAILD-NYEAGFQTAF  137 (264)
T ss_dssp             CEEECCSSSSHHHHHHHHHHH-HHHHTSCEEE
T ss_pred             eeeeccccccccHHHHHHHHH-HHhcccceeE
Confidence            467899999999988765542 2333444433

>d2jfga3 c.72.2.1 (A:94-297) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=87.84  E-value=0.21  Score=26.67  Aligned_cols=21  Identities=19%  Similarity=0.009  Sum_probs=15.5

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +++|+|.|-  -||||.+..+++
T Consensus        11 ~~vI~VTGT--~GKTTt~~~l~~   31 (204)
T d2jfga3          11 APIVAITGS--NGKSTVTTLVGE   31 (204)
T ss_dssp             SCEEEEECS--SSHHHHHHHHHH
T ss_pred             CCEEEEECC--CCHHHHHHHHHH
Confidence            357888875  699997776665

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=86.68  E-value=0.18  Score=23.93  Aligned_cols=20  Identities=5%  Similarity=0.137  Sum_probs=17.3

Q ss_pred             eeEEcCCCCcHHHHHHHHhc
Q 037564            5 KPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         5 i~i~G~~G~GKTtLa~~~~~   24 (93)
                      |-+.|.+|+|-+.||+.+.+
T Consensus         4 ihfiGIgG~GMs~LA~~L~~   23 (89)
T d1j6ua1           4 IHFVGIGGIGMSAVALHEFS   23 (89)
T ss_dssp             EEEETTTSHHHHHHHHHHHH
T ss_pred             EEEEeECHHHHHHHHHHHHh
Confidence            45679999999999998776

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=86.58  E-value=0.31  Score=27.27  Aligned_cols=21  Identities=14%  Similarity=0.107  Sum_probs=17.2

Q ss_pred             eeeEEcCCCCcHHHHHHHHhc
Q 037564            4 CKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         4 ~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ...++|-.|+|||.++-....
T Consensus        78 ~~LL~GdvGsGKT~V~~~a~~   98 (233)
T d2eyqa3          78 DRLVCGDVGFGKTEVAMRAAF   98 (233)
T ss_dssp             EEEEECCCCTTTHHHHHHHHH
T ss_pred             CeEEEcCCCCCcHHHHHHHHH
Confidence            457899999999998877655

>d1e8ca3 c.72.2.1 (A:104-337) UDP-N-acetylmuramyl tripeptide synthetase MurE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramyl tripeptide synthetase MurE
species: Escherichia coli [TaxId: 562]

Probab=86.44  E-value=0.24  Score=26.88  Aligned_cols=20  Identities=15%  Similarity=-0.094  Sum_probs=14.7

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ++|+|.|-  .||||....+.+
T Consensus         6 ~vI~ITGT--~GKTTt~~~l~~   25 (234)
T d1e8ca3           6 RLVGVTGT--NGKTTTTQLLAQ   25 (234)
T ss_dssp             EEEEEESS--SCHHHHHHHHHH
T ss_pred             eEEEEECC--CcHHHHHHHHHH
Confidence            56777765  599998777655

>d1gg4a4 c.72.2.1 (A:99-312) UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF
species: Escherichia coli [TaxId: 562]

Probab=86.35  E-value=0.27  Score=26.27  Aligned_cols=21  Identities=19%  Similarity=0.063  Sum_probs=15.4

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ++||+|.|-  -||||.+..+.+
T Consensus         2 ~kvI~VTGT--nGKTTt~~mi~~   22 (214)
T d1gg4a4           2 ARVVALTGS--SGKTSVKEMTAA   22 (214)
T ss_dssp             CEEEEEECS--SCHHHHHHHHHH
T ss_pred             CCEEEEeCC--CcHHHHHHHHHH
Confidence            468888875  589997776554

>d1j6ua3 c.72.2.1 (A:89-295) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=85.76  E-value=0.3  Score=26.22  Aligned_cols=21  Identities=19%  Similarity=-0.040  Sum_probs=15.5

Q ss_pred             CceeeEEcCCCCcHHHHHHHHhc
Q 037564            2 SGCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      .++|+|.|-  -||||.+..+.+
T Consensus        14 ~~~iAITGT--nGKTTt~~~l~~   34 (207)
T d1j6ua3          14 KEEFAVTGT--DGKTTTTAMVAH   34 (207)
T ss_dssp             CCEEEEECS--SSHHHHHHHHHH
T ss_pred             CCEEEEECC--CCHHHHHHHHHH
Confidence            368899875  699997776544

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=84.47  E-value=0.12  Score=29.30  Aligned_cols=15  Identities=13%  Similarity=-0.148  Sum_probs=12.6

Q ss_pred             ceeeEEcCCCCcHHH
Q 037564            3 GCKPILDSSSFDKTA   17 (93)
Q Consensus         3 ~~i~i~G~~G~GKTt   17 (93)
                      +.+.+.++.|+|||+
T Consensus        10 ~~~lv~~~TGsGKT~   24 (305)
T d2bmfa2          10 RLTIMDLHPGAGKTK   24 (305)
T ss_dssp             CEEEECCCTTSSTTT
T ss_pred             CcEEEEECCCCCHHH
Confidence            456788999999995

>d1p3da3 c.72.2.1 (A:107-321) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=83.63  E-value=0.39  Score=25.82  Aligned_cols=20  Identities=20%  Similarity=-0.004  Sum_probs=14.1

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      ++|+|.|-  -||||....+.+
T Consensus        13 ~~I~ITGT--nGKTTt~~~l~~   32 (215)
T d1p3da3          13 HGIAVAGT--HGKTTTTAMISM   32 (215)
T ss_dssp             EEEEEESS--SCHHHHHHHHHH
T ss_pred             CEEEEECC--CCHHHHHHHHHH
Confidence            47888874  699997765543

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=82.25  E-value=0.34  Score=25.27  Aligned_cols=50  Identities=10%  Similarity=0.093  Sum_probs=28.7

Q ss_pred             CceeeEEcCCC-CcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHHHHhhCC
Q 037564            2 SGCKPILDSSS-FDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSVMP   59 (93)
Q Consensus         2 ~~~i~i~G~~G-~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~il~~l~~   59 (93)
                      ++-|+|.|-.| +|++||-..  +  +..+.|..... +.  ..+... +.+.+..+.+
T Consensus         2 pK~I~IlGsTGSIG~~tL~Vi--~--~~~d~f~v~~l-sa--~~N~~~-L~~q~~ef~P   52 (150)
T d1r0ka2           2 PRTVTVLGATGSIGHSTLDLI--E--RNLDRYQVIAL-TA--NRNVKD-LADAAKRTNA   52 (150)
T ss_dssp             CEEEEEETTTSHHHHHHHHHH--H--HTGGGEEEEEE-EE--SSCHHH-HHHHHHHTTC
T ss_pred             CcEEEEECCCcHHHHHHHHHH--H--cCCCCcEEEEE-Ee--CCCHHH-HHHHHHhhcc
Confidence            35689999999 599998543  2  33445654443 22  234444 4444455553

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=81.60  E-value=0.23  Score=23.38  Aligned_cols=21  Identities=5%  Similarity=-0.200  Sum_probs=15.8

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +-|.|.|+|++|.++ |+.+.+
T Consensus         6 K~v~ViGlG~sG~s~-a~~L~~   26 (93)
T d2jfga1           6 KNVVIIGLGLTGLSC-VDFFLA   26 (93)
T ss_dssp             CCEEEECCSHHHHHH-HHHHHH
T ss_pred             CEEEEEeECHHHHHH-HHHHHH
Confidence            457899999999875 666555

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=81.10  E-value=0.82  Score=23.30  Aligned_cols=23  Identities=17%  Similarity=-0.071  Sum_probs=16.7

Q ss_pred             CceeeEEcCCCCcHHH-HHHHHhc
Q 037564            2 SGCKPILDSSSFDKTA-FTADTYN   24 (93)
Q Consensus         2 ~~~i~i~G~~G~GKTt-La~~~~~   24 (93)
                      ..+-.|.|+=.+|||| |.+.+.+
T Consensus         2 G~L~~i~GpMfsGKTteLi~~~~~   25 (139)
T d2b8ta1           2 GWIEFITGPMFAGKTAELIRRLHR   25 (139)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHHH
T ss_pred             cEEEEEEccccCHHHHHHHHHHHH
Confidence            3455788999999999 5555543

>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Nucleotide excision repair enzyme UvrB
species: Bacillus caldotenax [TaxId: 1395]

Probab=81.06  E-value=0.89  Score=27.54  Aligned_cols=22  Identities=14%  Similarity=0.152  Sum_probs=18.8

Q ss_pred             ceeeEEcCCCCcHHHHHHHHhc
Q 037564            3 GCKPILDSSSFDKTAFTADTYN   24 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtLa~~~~~   24 (93)
                      +-..+.|..|+|||-++..++.
T Consensus        32 ~~q~l~GltGS~ka~~iA~l~~   53 (413)
T d1t5la1          32 KHQTLLGATGTGKTFTISNVIA   53 (413)
T ss_dssp             SEEEEEECTTSCHHHHHHHHHH
T ss_pred             CcEEEeCCCCcHHHHHHHHHHH
Confidence            4567899999999998888887

>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Neurospora crassa [TaxId: 5141]

Probab=80.47  E-value=0.61  Score=27.43  Aligned_cols=16  Identities=13%  Similarity=0.005  Sum_probs=12.9

Q ss_pred             ceeeEEcCCCCcHHHH
Q 037564            3 GCKPILDSSSFDKTAF   18 (93)
Q Consensus         3 ~~i~i~G~~G~GKTtL   18 (93)
                      ..|..+|..|+|||..
T Consensus        81 ~ti~aYG~tgSGKT~T   96 (354)
T d1goja_          81 GTVFAYGQTGAGKSYT   96 (354)
T ss_dssp             EEEEEECSTTSSHHHH
T ss_pred             eeEEecccCCCCccee
Confidence            3577789999999954