Citrus Sinensis ID: 037575

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400------
Protein Sequence
MASLLNLTPPKLCIQKRNTALHSFRCNSILKPQKSVKANGGLCTLACSTSPFVGRVGLQRREGNVSLLSFGINAGSVVARYDSSQVLSAMLPFVVALTAVAALAQPSTFTWVSKELYAPALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVLIAKAFGIPQIFYAGFVLTACVSGAQLSSYASFLSKGDVAVSILLSSSTTIASVLITPLLTGLLIGSVIPVDAVAMSKSILQVVLVPVALGLGLNTYAKPVVSFLRPVMPFVAMICTSLCIGSPLAINRSQILSIEGLQLVLPVLTFHAVAFAVGYWVSKIPSWRQGEEVSRTISLCTGMQSSTLAGLLATQFLGSSQAVPPACSVIAMAIMGLCLASFWGSGSRIRDLTNILNWHSSSAANT
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEcccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccEccccEEEEcccccccccccccccccccEEEEEEccccccccccccccHccHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHccccHHHHHHHHHHHHccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHEEEEEEEEccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEEccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHccHHHHHcccc
Coil and Loop (DISEMBL)
masllnltppklciqkrntalhsfrcnsilkpqksvkangglctlacstspfvgrvglqrregnVSLLSFGINAGSVVARYDSSQVLSAMLPFVVALTAVAAlaqpstftwvSKELYAPALGGIMLSIGIRLSIEDFALafkrplplsvgfVAQYIIKPILGVLIAKAFGIPQIFYAGFVLTACVSGAQLSSYASFLSKGDVAVSILLSSSTTIASVLITPLLTGLLIGSVIPVDAVAMSKSILQVVLVPVAlglglntyakpvvsflrpvMPFVAMICTSLcigsplainrsqilsIEGLQLVLPVLTFHAVAFAVGYWvskipswrqgeeVSRTISLCTGMQSSTLAGLLATQflgssqavppaCSVIAMAIMGLCLAsfwgsgsrirdLTNILNWhsssaant
Flexible Loop (DISEMBL)
masllnltppklcIQKRNTALHSFRCNSILKPQKSVKANGGLCTLACSTSPFVGRVGLQRREGNVSLLSFGINAGSVVARYDSSQVLSAMLPFVVALTAVAALAQPSTFTWVSKELYAPALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVLIAKAFGIPQIFYAGFVLTACVSGAQLSSYASFLSKGDVAVSILLSSSTTIASVLITPLLTGLLIGSVIPVDAVAMSKSILQVVLVPVALGLGLNTYAKPVVSFLRPVMPFVAMICTSLCIGSPLAINRSQILSIEGLQLVLPVLTFHAVAFAVGYWVSKIPSWRQGEEVSRTISLCTGMQSSTLAGLLATQFLGSSQAVPPACSVIAMAIMGLCLASFWGSGSRIRDLTNILnwhsssaant
Low Complexity Region (SEG)
MASLLNLTPPKLCIQKRNTALHSFRCNSILKPQKSVKANGGLCTLACSTSPFVGRVGLQRREGNVSLLSFGINAGSVVARYDSSQVLSAMLPFvvaltavaalaQPSTFTWVSKELYAPALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVLIAKAFGIPQIFYAGFVLTACVSGAQLSSYASFLSKGDvavsillsssttiasvlitplltglligSVIPVDAVAMSKSIlqvvlvpvalglglNTYAKPVVSFLRPVMPFVAMICTSLCIGSPLAINRSQILSIEGLQLVLPVLTFHAVAFAVGYWVSKIPSWRQGEEVSRTISLCTGMQSSTLAGLLATQFLGSSQAVPPACSVIAMAIMGLCLASFWGSGSRIRDLTNILNWHSSSAANT
Disordered region (IsUnstruct)
*********PKLCIQKRNTALHSFRCNSILKPQKSVKANGGLCTLACSTSPFVGRVGLQRREGNVSLLSFGINAGSVVARYDSSQVLSAMLPFVVALTAVAALAQPSTFTWVSKELYAPALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVLIAKAFGIPQIFYAGFVLTACVSGAQLSSYASFLSKGDVAVSILLSSSTTIASVLITPLLTGLLIGSVIPVDAVAMSKSILQVVLVPVALGLGLNTYAKPVVSFLRPVMPFVAMICTSLCIGSPLAINRSQILSIEGLQLVLPVLTFHAVAFAVGYWVSKIPSWRQGEEVSRTISLCTGMQSSTLAGLLATQFLGSSQAVPPACSVIAMAIMGLCLASFWGSGSRIRDLTNILNWH*******
Disordered Region (DISOPRED)
**********************************************************************************SSQVLSAMLPFVVALTAVAALAQPSTFTWVSKELYAPALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVLIAKAFGIPQIFYAGFVLTACVSGAQLSSYASFLSKGDVAVSILLSSSTTIASVLITPLLTGLLIGSVIPVDAVAMSKSILQVVLVPVALGLGLNTYAKPVVSFLRPVMPFVAMICTSLCIGSPLAINRSQILSIEGLQLVLPVLTFHAVAFAVGYWVSKIPSWRQGEEVSRTISLCTGMQSSTLAGLLATQFLGSSQAVPPACSVIAMAIMGLCLASFWG**********************
Disordered Region (DISEMBL)
MASLLNLTPPKLCIQKRNTALHSFRCNSILKPQKSVKANGGLCTLACSTSPFVGRVGLQRREGNVSLLSFGINAGSVVARYDSSQVLSAMLPFVVALTAVAALAQPSTFTWVSKELYAPALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVLIAKAFGIPQIFYAGFVLTACVSGAQLSSYASFLSKGDVAVSILLSSSTTIASVLITPLLTGLLIGSVIPVDAVAMSKSILQVVLVPVALGLGLNTYAKPVVSFLRPVMPFVAMICTSLCIGSPLAINRSQILSIEGLQLVLPVLTFHAVAFAVGYWVSKIPSWRQGEEVSRTISLCTGMQSSTLAGLLATQFLGSSQAVPPACSVIAMAIMGLCLASFWGSGSRIRDLTNILNWHSSSAANT
Disordered Region (DISPRO)
***LLNLTPPKLCIQKRNTALHSFRCNSILKPQKSVKANGGLCTLACSTSPFVGRVGLQRREGNVSLLSFGINAGSVVARYDSSQVLSAMLPFVVALTAVAALAQPSTFTWVSKELYAPALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVLIAKAFGIPQIFYAGFVLTACVSGAQLSSYASFLSKGDVAVSILLSSSTTIASVLITPLLTGLLIGSVIPVDAVAMSKSILQVVLVPVALGLGLNTYAKPVVSFLRPVMPFVAMICTSLCIGSPLAINRSQILSIEGLQLVLPVLTFHAVAFAVGYWVSKIPSWRQGEEVSRTISLCTGMQSSTLAGLLATQFLGSSQAVPPACSVIAMAIMGLCLASFWGSGS*******************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASLLNLTPPKLCIQKRNTALHSFRCNSILKPQKSVKANGGLCTLACSTSPFVGRVGLQRREGNVSLLSFGINAGSVVARYDSSQVLSAMLPFVVALTAVAALAQPSTFTWVSKELYAPALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVLIAKAFGIPQIFYAGFVLTACVSGAQLSSYASFLSKGDVAVSILLSSSTTIASVLITPLLTGLLIGSVIPVDAVAMSKSILQVVLVPVALGLGLNTYAKPVVSFLRPVMPFVAMICTSLCIGSPLAINRSQILSIEGLQLVLPVLTFHAVAFAVGYWVSKIPSWRQGEEVSRTISLCTGMQSSTLAGLLATQFLGSSQAVPPACSVIAMAIMGLCLASFWGSGSRIRDLTNILNWHSSSAANT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	406	2.2.26 [Sep-21-2011]
Q8RXE8	431	Probable sodium/metabolit	yes	no	0.881	0.830	0.769	1e-155
Q6K739	423	Probable sodium/metabolit	yes	no	0.857	0.822	0.727	1e-135
Q8VYY4	409	Probable sodium/metabolit	no	no	0.812	0.806	0.388	5e-57
Q650U0	401	Probable sodium/metabolit	no	no	0.736	0.745	0.414	9e-57
B8BDK4	401	Probable sodium/metabolit	N/A	no	0.736	0.745	0.414	9e-57
F4JPW1	407	Probable sodium/metabolit	no	no	0.724	0.722	0.412	2e-54
Q1EBV7	409	Sodium/pyruvate cotranspo	no	no	0.726	0.721	0.423	5e-54
Q5VRB2	419	Probable sodium/metabolit	no	no	0.729	0.706	0.403	3e-52
Q93YR2	401	Probable sodium/metabolit	no	no	0.724	0.733	0.370	1e-42
Q7XVB3	406	Probable sodium/metabolit	no	no	0.729	0.729	0.375	7e-41

>sp|Q8RXE8|BASS3_ARATH Probable sodium/metabolite cotransporter BASS3, chloroplastic OS=Arabidopsis thaliana GN=BASS3 PE=2 SV=1

 Score =  549 bits (1415), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 277/360 (76%), Positives = 321/360 (89%), Gaps = 2/360 (0%)

Query: 37  KANGGLC-TLACSTSPFVGRVGLQRREGNVSLLSFGINAGSVVARYDSSQVLSAMLPFVV 95
           + N GL   +ACST+PF+GRVGL  R+GN+SLLSF      V  + DSSQ  SA+LPFVV
Sbjct: 61  RRNSGLVPVVACSTTPFMGRVGLHWRDGNMSLLSF-CGGTDVTEKADSSQFWSALLPFVV 119

Query: 96  ALTAVAALAQPSTFTWVSKELYAPALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQY 155
           ALTAVAAL+ P +FTWVSK+LYAPALGGIMLSIGI+LS++DFALAFKRP+PLSVGFVAQY
Sbjct: 120 ALTAVAALSYPPSFTWVSKDLYAPALGGIMLSIGIQLSVDDFALAFKRPVPLSVGFVAQY 179

Query: 156 IIKPILGVLIAKAFGIPQIFYAGFVLTACVSGAQLSSYASFLSKGDVAVSILLSSSTTIA 215
           ++KP+LGVL+A AFG+P+ FYAGF+LT CV+GAQLSSYAS LSK DVA+SILL+SSTTIA
Sbjct: 180 VLKPLLGVLVANAFGMPRTFYAGFILTCCVAGAQLSSYASSLSKADVAMSILLTSSTTIA 239

Query: 216 SVLITPLLTGLLIGSVIPVDAVAMSKSILQVVLVPVALGLGLNTYAKPVVSFLRPVMPFV 275
           SV+ TPLL+GLLIGSV+PVDAVAMSKSILQVVLVP+ LGL LNTYAKPVV+ L+PVMPFV
Sbjct: 240 SVIFTPLLSGLLIGSVVPVDAVAMSKSILQVVLVPITLGLVLNTYAKPVVTLLQPVMPFV 299

Query: 276 AMICTSLCIGSPLAINRSQILSIEGLQLVLPVLTFHAVAFAVGYWVSKIPSWRQGEEVSR 335
           AM+CTSLCIGSPL+INRSQILS EGL L++P++TFHAVAFA+GYW SKIP  RQ EEVSR
Sbjct: 300 AMVCTSLCIGSPLSINRSQILSAEGLGLIVPIVTFHAVAFALGYWFSKIPGLRQEEEVSR 359

Query: 336 TISLCTGMQSSTLAGLLATQFLGSSQAVPPACSVIAMAIMGLCLASFWGSGSRIRDLTNI 395
           TISLCTGMQSSTLAGLLA+QFLGSSQAVP ACSV+ MAIMGLCLASFWG+G RIRD+ ++
Sbjct: 360 TISLCTGMQSSTLAGLLASQFLGSSQAVPAACSVVVMAIMGLCLASFWGNGFRIRDVLSL 419

May function as sodium-coupled metabolite transporter across the chloroplast envelope.
Arabidopsis thaliana (taxid: 3702)

>sp|Q6K739|BASS3_ORYSJ Probable sodium/metabolite cotransporter BASS3, chloroplastic OS=Oryza sativa subsp. japonica GN=BASS3 PE=2 SV=1

 Score =  483 bits (1243), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 256/352 (72%), Positives = 302/352 (85%), Gaps = 4/352 (1%)

Query: 44  TLACSTSPFVGRVGLQRREGNVSLLSFG---INAGSVVARYDSSQVLSAMLPFVVALTAV 100
           T  CS +P +GRVG  RREG   LLSF    +++ S  A  D SQ LSA+LP VVA TAV
Sbjct: 59  TTFCS-APSLGRVGWPRREGAAWLLSFRAGPVSSPSSAAAGDPSQALSALLPLVVAATAV 117

Query: 101 AALAQPSTFTWVSKELYAPALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPI 160
           AAL  P+TF+WVSKE YAPALGGIMLSIGI+LSI+DFALAFKRP+PL++G++AQYI+KP+
Sbjct: 118 AALGNPATFSWVSKEYYAPALGGIMLSIGIKLSIDDFALAFKRPVPLTIGYMAQYIVKPL 177

Query: 161 LGVLIAKAFGIPQIFYAGFVLTACVSGAQLSSYASFLSKGDVAVSILLSSSTTIASVLIT 220
           +GVLIA+AFG+P  F+AGFVLT CVSGAQLSSYASFLSKGDVA+SILL+S +TI+SV++T
Sbjct: 178 MGVLIARAFGMPSAFFAGFVLTCCVSGAQLSSYASFLSKGDVALSILLTSCSTISSVVVT 237

Query: 221 PLLTGLLIGSVIPVDAVAMSKSILQVVLVPVALGLGLNTYAKPVVSFLRPVMPFVAMICT 280
           P+LTGLLIGSV+PVD +AM+KSILQVVLVPV LGL LNTYAK VV+ ++PVMPFVAM+CT
Sbjct: 238 PVLTGLLIGSVVPVDGIAMAKSILQVVLVPVTLGLLLNTYAKAVVNVIQPVMPFVAMLCT 297

Query: 281 SLCIGSPLAINRSQILSIEGLQLVLPVLTFHAVAFAVGYWVSKIPSWRQGEEVSRTISLC 340
           SLCIGSPLAINRS+ILS EG  L+LP++TFH  AF VGYW+SK+P  RQ E V RTIS+C
Sbjct: 298 SLCIGSPLAINRSKILSSEGFLLLLPIVTFHIAAFIVGYWISKLPMLRQEEPVCRTISVC 357

Query: 341 TGMQSSTLAGLLATQFLGSSQAVPPACSVIAMAIMGLCLASFWGSGSRIRDL 392
           TGMQSSTLAGLLATQFLGSSQAVP ACSV+ MAI GL LAS+WG+G RIRD+
Sbjct: 358 TGMQSSTLAGLLATQFLGSSQAVPAACSVVIMAIFGLTLASYWGNGLRIRDI 409

May function as sodium-coupled metabolite transporter across the chloroplast envelope.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8VYY4|BASS6_ARATH Probable sodium/metabolite cotransporter BASS6, chloroplastic OS=Arabidopsis thaliana GN=BASS6 PE=2 SV=1

 Score =  222 bits (565), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 134/345 (38%), Positives = 208/345 (60%), Gaps = 15/345 (4%)

Query: 54  GRVGLQRREGNVSLLSFGINAGS----VVAR---YDSSQVLSAMLPFVVALTAVAALAQP 106
           G   L RR  + +    G++ G+    V+ +    D  +  +++LP VV  + + AL  P
Sbjct: 57  GSRNLWRRYASDNFSEMGLDPGADPFKVIEKPSIVDRMKKANSILPHVVLASTILALIYP 116

Query: 107 STFTWVSKELYAPALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVLIA 166
            +FTW +   + PALG +M ++GI  + +DF  AFKRP  + +G+V QY++KP+LG +  
Sbjct: 117 PSFTWFTSRYFVPALGFLMFAVGINSNEKDFLEAFKRPKAILLGYVGQYLVKPVLGFIFG 176

Query: 167 KA----FGIPQIFYAGFVLTACVSGAQLSSYASFLSKGDVA-VSILLSSSTTIASVLITP 221
            A    F +P    AG +L +CVSGAQLS+YA+FL+   +A +SI+++S +T  +VL+TP
Sbjct: 177 LAAVSLFQLPTPIGAGIMLVSCVSGAQLSNYATFLTDPALAPLSIVMTSLSTATAVLVTP 236

Query: 222 LLTGLLIGSVIPVDAVAMSKSILQVVLVPVALGLGLNTYAKPVVSFLRPVMPFVAMICTS 281
           +L+ LLIG  +PVD   M  SILQVV+ P+A GL LN     V + +RP +P ++++ T+
Sbjct: 237 MLSLLLIGKKLPVDVKGMISSILQVVIAPIAAGLLLNKLFPKVSNAIRPFLPILSVLDTA 296

Query: 282 LCIGSPLAINRSQILSIEGLQLVLPVLTFHAVAFAVGYWV--SKIPSWRQGEEVSRTISL 339
            C+G+PLA+N + ++S  G  ++L V  FH  AF  GY++  S   +    + + RT+S 
Sbjct: 297 CCVGAPLALNINSVMSPFGATILLLVTMFHLSAFLAGYFLTGSVFRNAPDAKAMQRTLSY 356

Query: 340 CTGMQSSTLAGLLATQFLGSSQ-AVPPACSVIAMAIMGLCLASFW 383
            TGMQSS LA  LAT+F       +PPA S + M++MG  L   W
Sbjct: 357 ETGMQSSLLALALATKFFQDPLVGIPPAISTVVMSLMGFTLVLIW 401

May function as sodium-coupled metabolite transporter across the chloroplast envelope.

Arabidopsis thaliana (taxid: 3702)

>sp|Q650U0|BASS5_ORYSJ Probable sodium/metabolite cotransporter BASS5, chloroplastic OS=Oryza sativa subsp. japonica GN=BASS5 PE=2 SV=1

 Score =  221 bits (563), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 129/311 (41%), Positives = 191/311 (61%), Gaps = 12/311 (3%)

Query: 88  SAMLPFVVALTAVAALAQPSTFTWVSKELYAPALGGIMLSIGIRLSIEDFALAFKRPLPL 147
           + ++P VV  + + AL  P +FTW +   YAPALG +M ++G+  S++DF  A +RP  +
Sbjct: 92  NTIIPHVVLGSTILALVYPPSFTWFTTRYYAPALGFLMFAVGVNSSVKDFIEAIQRPDAI 151

Query: 148 SVGFVAQYIIKPILGVLIAK----AFGIPQIFYAGFVLTACVSGAQLSSYASFLSKGDVA 203
           + G+V Q+IIKP LG L        F +P    AG +L +CVSGAQLS+YA+FL+   +A
Sbjct: 152 AAGYVGQFIIKPFLGFLFGTLAVTIFNLPTALGAGIMLVSCVSGAQLSNYATFLTDPHMA 211

Query: 204 -VSILLSSSTTIASVLITPLLTGLLIGSVIPVDAVAMSKSILQVVLVPVALGLGLNTYAK 262
            +SI+++S +T  +V +TP L+  LIG  +PVD   M  SI+Q+V+ P+A GL LN Y  
Sbjct: 212 PLSIVMTSLSTATAVFVTPTLSYFLIGKKLPVDVKGMMSSIVQIVVAPIAAGLLLNRYLP 271

Query: 263 PVVSFLRPVMPFVAMICTSLCIGSPLAINRSQILSIEGLQLVLPVLTFHAVAFAVGYWVS 322
            + S ++P +P +++  T+LC+GSPLAIN   +LS  GL  VL +  FH  +F  GY ++
Sbjct: 272 RLCSAIQPFLPPLSVFVTALCVGSPLAINIKAVLSPFGLATVLLLFAFHTSSFIAGYHLA 331

Query: 323 KIPSW-RQGEEVS---RTISLCTGMQSSTLAGLLATQFLGSSQ-AVPPACSVIAMAIMGL 377
              +W R+  +V    RT+S  TGMQSS LA  LA +F       VPPA SV+ M++MG 
Sbjct: 332 G--TWFRESADVKALQRTVSFETGMQSSLLALALANRFFPDPLVGVPPAISVVLMSLMGF 389

Query: 378 CLASFWGSGSR 388
            L   W   ++
Sbjct: 390 ALVMVWSKRTK 400

May function as sodium-coupled metabolite transporter across the chloroplast envelope.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|B8BDK4|BASS5_ORYSI Probable sodium/metabolite cotransporter BASS5, chloroplastic OS=Oryza sativa subsp. indica GN=BASS5 PE=3 SV=1

 Score =  221 bits (563), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 129/311 (41%), Positives = 191/311 (61%), Gaps = 12/311 (3%)

Query: 88  SAMLPFVVALTAVAALAQPSTFTWVSKELYAPALGGIMLSIGIRLSIEDFALAFKRPLPL 147
           + ++P VV  + + AL  P +FTW +   YAPALG +M ++G+  S++DF  A +RP  +
Sbjct: 92  NTIIPHVVLGSTILALVYPPSFTWFTTRYYAPALGFLMFAVGVNSSVKDFIEAIQRPDAI 151

Query: 148 SVGFVAQYIIKPILGVLIAK----AFGIPQIFYAGFVLTACVSGAQLSSYASFLSKGDVA 203
           + G+V Q+IIKP LG L        F +P    AG +L +CVSGAQLS+YA+FL+   +A
Sbjct: 152 AAGYVGQFIIKPFLGFLFGTLAVTIFNLPTALGAGIMLVSCVSGAQLSNYATFLTDPHMA 211

Query: 204 -VSILLSSSTTIASVLITPLLTGLLIGSVIPVDAVAMSKSILQVVLVPVALGLGLNTYAK 262
            +SI+++S +T  +V +TP L+  LIG  +PVD   M  SI+Q+V+ P+A GL LN Y  
Sbjct: 212 PLSIVMTSLSTATAVFVTPTLSYFLIGKKLPVDVKGMMSSIVQIVVAPIAAGLLLNRYLP 271

Query: 263 PVVSFLRPVMPFVAMICTSLCIGSPLAINRSQILSIEGLQLVLPVLTFHAVAFAVGYWVS 322
            + S ++P +P +++  T+LC+GSPLAIN   +LS  GL  VL +  FH  +F  GY ++
Sbjct: 272 RLCSAIQPFLPPLSVFVTALCVGSPLAINIKAVLSPFGLATVLLLFAFHTSSFIAGYHLA 331

Query: 323 KIPSW-RQGEEVS---RTISLCTGMQSSTLAGLLATQFLGSSQ-AVPPACSVIAMAIMGL 377
              +W R+  +V    RT+S  TGMQSS LA  LA +F       VPPA SV+ M++MG 
Sbjct: 332 G--TWFRESADVKALQRTVSFETGMQSSLLALALANRFFPDPLVGVPPAISVVLMSLMGF 389

Query: 378 CLASFWGSGSR 388
            L   W   ++
Sbjct: 390 ALVMVWSKRTK 400

May function as sodium-coupled metabolite transporter across the chloroplast envelope.

Oryza sativa subsp. indica (taxid: 39946)

>sp|F4JPW1|BASS5_ARATH Probable sodium/metabolite cotransporter BASS5, chloroplastic OS=Arabidopsis thaliana GN=BASS5 PE=2 SV=1

 Score =  213 bits (543), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 127/308 (41%), Positives = 186/308 (60%), Gaps = 14/308 (4%)

Query: 89  AMLPFVVALTAVAALAQPSTFTWVSKELYAPALGGIMLSIGIRLSIEDFALAFKRPLPLS 148
           + +P  + L+ + AL  P +FTW     + P LG +M ++GI  +  DF  A KRP  + 
Sbjct: 100 SFIPHGILLSTILALVYPPSFTWFKPRYFVPGLGFMMFAVGINSNERDFLEALKRPDAIF 159

Query: 149 VGFVAQYIIKPILG----VLIAKAFGIPQIFYAGFVLTACVSGAQLSSYASFLSKGDVA- 203
            G++ QY+IKP+LG    V+    F +P    AG +L +CVSGAQLS+Y +FL+   +A 
Sbjct: 160 AGYIGQYLIKPLLGYIFGVIAVSLFNLPTSIGAGIMLVSCVSGAQLSNYTTFLTDPSLAA 219

Query: 204 VSILLSSSTTIASVLITPLLTGLLIGSVIPVDAVAMSKSILQVVLVPVALGLGLNTYAKP 263
           +SI+++S +T  +VL+TP+L+ LLIG  +PVD   M  SILQVV+ P+A GL LN     
Sbjct: 220 LSIVMTSISTATAVLVTPMLSLLLIGKKLPVDVFGMISSILQVVITPIAAGLLLNRLFPR 279

Query: 264 VVSFLRPVMPFVAMICTSLCIGSPLAINRSQILSIEGLQLVLPVLTFHAVAFAVGY---- 319
           + + ++P +P + +I  S CIG+PLA+N   ILS  G  ++  V+TFH +AF  GY    
Sbjct: 280 LSNAIKPFLPALTVIDMSCCIGAPLALNIDSILSPFGATILFLVITFHLLAFVAGYFFTG 339

Query: 320 -WVSKIPSWRQGEEVSRTISLCTGMQSSTLAGLLATQFLGSSQ-AVPPACSVIAMAIMGL 377
            + SK P  +    + RTIS  TGMQSS LA  LAT+F       VPPA S + M++MG+
Sbjct: 340 FFFSKAPDVK---ALQRTISYETGMQSSLLALALATKFFQDPLVGVPPAISTVVMSLMGV 396

Query: 378 CLASFWGS 385
            L + W +
Sbjct: 397 SLVTIWKN 404

Plastidic transporter involved in the biosynthesis of aliphatic glucosinolates by translocating the biosynthetic intermediates of Met-derived glucosinolates across chloroplast membranes. Transports short chain (C2) alpha-keto acids, such as 4-methylsulfanyl-2-oxobutanoic acid, from the cytosol to the chloroplast where they are subjected to chain elongation cycles. Functions also in the transport of chain-elongated (C3 to C8) Met derivatives from the chloroplast to the cytosol. Does not seem to be involved in the transport of indole-derived glucosinolates.

Arabidopsis thaliana (taxid: 3702)

>sp|Q1EBV7|BASS2_ARATH Sodium/pyruvate cotransporter BASS2, chloroplastic OS=Arabidopsis thaliana GN=BASS2 PE=2 SV=1

 Score =  211 bits (538), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 127/300 (42%), Positives = 186/300 (62%), Gaps = 5/300 (1%)

Query: 85  QVLSAMLPFVVALTAVAALAQPSTFTWVSKELYAPALGGIMLSIGIRLSIEDFALAFKRP 144
           ++L+ + P  V L  +  + +PS  TW+  +L+   LG +MLS+G+ L+ EDF    + P
Sbjct: 99  ELLTTLFPLWVILGTLVGIFKPSLVTWLETDLFTLGLGFLMLSMGLTLTFEDFRRCLRNP 158

Query: 145 LPLSVGFVAQYIIKPILGVLIAKAFGIPQIFYAGFVLTACVSGAQLSSYASFLSKGDVAV 204
             + VGF+AQY+IKPILG LIA    +      G +L +C  G Q S+ A+++SKG+VA+
Sbjct: 159 WTVGVGFLAQYMIKPILGFLIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVAL 218

Query: 205 SILLSSSTTIASVLITPLLTGLLIGSVIPVDAVAMSKSILQVVLVPVALGLGLNTYAKPV 264
           S+L+++ +TI ++++TPLLT LL G ++PVDA  ++ S  QVVLVP  +G+  N +    
Sbjct: 219 SVLMTTCSTIGAIIMTPLLTKLLAGQLVPVDAAGLALSTFQVVLVPTIIGVLANEFFPKF 278

Query: 265 VSFLRPVMPFVAMICTSLCIGSPLAINRSQILSIEGLQLVLPVLTFHAVAFAVGYWVSKI 324
            S +  V P + +I T+L   SP+    + +L  +G QL+LPV   HA AFA+GYW+SK 
Sbjct: 279 TSKIITVTPLIGVILTTLLCASPIG-QVADVLKTQGAQLILPVALLHAAAFAIGYWISK- 336

Query: 325 PSWRQGEEVSRTISLCTGMQSSTLAGLLATQ-FLGSSQAVPPACSVIAMAIMGLCLASFW 383
             +  GE  SRTIS+  GMQSS L  LLA + F     AVP A SV+ MA+ G  LA FW
Sbjct: 337 --FSFGESTSRTISIECGMQSSALGFLLAQKHFTNPLVAVPSAVSVVCMALGGSGLAVFW 394

Sodium-coupled metabolite transporter that plays a crucial role in pyruvate transport across the chloroplast envelope. Is required for sodium-coupled pyruvate import into plastids.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5VRB2|BASS2_ORYSJ Probable sodium/metabolite cotransporter BASS2, chloroplastic OS=Oryza sativa subsp. japonica GN=BASS2 PE=2 SV=1

 Score =  206 bits (523), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 121/300 (40%), Positives = 186/300 (62%), Gaps = 4/300 (1%)

Query: 85  QVLSAMLPFVVALTAVAALAQPSTFTWVSKELYAPALGGIMLSIGIRLSIEDFALAFKRP 144
           ++L+ + P  V L  +  + +PS  TW+  +L+   LG +MLS+G+ L+ EDF    + P
Sbjct: 108 ELLTTLFPVWVILGTIIGIYKPSMVTWLETDLFTVGLGFLMLSMGLTLTFEDFRRCMRNP 167

Query: 145 LPLSVGFVAQYIIKPILGVLIAKAFGIPQIFYAGFVLTACVSGAQLSSYASFLSKGDVAV 204
             + VGF+AQY+IKP+LG  IA    +      G +L +C  G Q S+ A+++SKG+VA+
Sbjct: 168 WTVGVGFLAQYLIKPMLGFAIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVAL 227

Query: 205 SILLSSSTTIASVLITPLLTGLLIGSVIPVDAVAMSKSILQVVLVPVALGLGLNTYAKPV 264
           S+L+++ +TI ++++TPLLT LL G ++PVDA  ++ S  QVVL+P  +G+  + Y    
Sbjct: 228 SVLMTTCSTIGAIVMTPLLTKLLAGQLVPVDAAGLAISTFQVVLLPTIVGVLAHEYFPKF 287

Query: 265 VSFLRPVMPFVAMICTSLCIGSPLAINRSQILSIEGLQLVLPVLTFHAVAFAVGYWVSKI 324
              +  + P + ++ T+L   SP+    S++L  +G QL++PV   H  AFA+GYW+SK+
Sbjct: 288 TERIISITPLIGVLLTTLLCASPIG-QVSEVLKAQGGQLIIPVALLHVAAFALGYWLSKV 346

Query: 325 PSWRQGEEVSRTISLCTGMQSSTLAGLLATQ-FLGSSQAVPPACSVIAMAIMGLCLASFW 383
            S+  GE  SRTIS+  GMQSS L  LLA + F     AVP A SV+ MA+ G  LA FW
Sbjct: 347 SSF--GESTSRTISIECGMQSSALGFLLAQKHFTNPLVAVPSAVSVVCMALGGSALAVFW 404

May function as sodium-coupled metabolite transporter across the chloroplast envelope.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q93YR2|BASS1_ARATH Probable sodium/metabolite cotransporter BASS1, chloroplastic OS=Arabidopsis thaliana GN=BASS1 PE=2 SV=1

 Score =  174 bits (440), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 112/302 (37%), Positives = 171/302 (56%), Gaps = 8/302 (2%)

Query: 85  QVLSAMLPFVVALTAVAALAQPSTFTWVSKELYAPALGGIMLSIGIRLSIEDFALAFKRP 144
           + +S   P  V+L  +  L +PSTF WV+       L   ML +G+ L+++D   A   P
Sbjct: 95  EAVSTAFPIWVSLGCLLGLMRPSTFNWVTPNWTIVGLTITMLGMGMTLTLDDLRGALSMP 154

Query: 145 LPLSVGFVAQYIIKPILGVLIAKAFGIPQIFYAGFVLTACVSGAQLSSYASFLSKGDVAV 204
             L  GF+ QY + P+    ++K   +P  + AG +L  C  G   S+  +++++G+VA+
Sbjct: 155 KELFAGFLLQYSVMPLSAFFVSKLLNLPPHYAAGLILVGCCPGGTASNIVTYIARGNVAL 214

Query: 205 SILLSSSTTIASVLITPLLTGLLIGSVIPVDAVAMSKSILQVVLVPVALGLGLNTYAKPV 264
           S+L+++++T+++V++TPLLT  L    I VDA+ +  S LQVVL+PV  G  LN Y K +
Sbjct: 215 SVLMTAASTVSAVIMTPLLTAKLAKQYITVDALGLLMSTLQVVLLPVLAGAFLNQYFKKL 274

Query: 265 VSFLRPVMPFVAMICTSLCIGSPLAINRSQILSIEGLQLVLPVLTFHAVAFAVGYWVSKI 324
           V F+ PVMP +A+   ++  G  +  N S IL + G Q+VL     H   F  GY  S+I
Sbjct: 275 VKFVSPVMPPIAVGTVAILCGYAIGQNASAIL-MSGKQVVLASCLLHISGFLFGYLFSRI 333

Query: 325 PSWRQGEEV--SRTISLCTGMQSSTLAGLLATQFLGSS-QAVPPACSVIAMAIMGLCLAS 381
                G +V  SRTIS+  GMQ+S L  +LATQ  G+   AVP A S +  +I+G  LA 
Sbjct: 334 ----LGIDVASSRTISIEVGMQNSVLGVVLATQHFGNPLTAVPCAVSSVCHSILGSVLAG 389

Query: 382 FW 383
            W
Sbjct: 390 IW 391

May function as sodium-coupled metabolite transporter across the chloroplast envelope.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XVB3|BASS1_ORYSJ Probable sodium/metabolite cotransporter BASS1, chloroplastic OS=Oryza sativa subsp. japonica GN=BASS1 PE=2 SV=2

 Score =  168 bits (426), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 114/304 (37%), Positives = 173/304 (56%), Gaps = 8/304 (2%)

Query: 85  QVLSAMLPFVVALTAVAALAQPSTFTWVSKELYAPALGGIMLSIGIRLSIEDFALAFKRP 144
           +VLS   P  VA     AL +P  F WVS       +   ML +G+ L+++D   A   P
Sbjct: 100 EVLSLGFPVWVASACAVALWRPPAFLWVSPMAQIVGISFTMLGMGMTLTLDDLKTALLMP 159

Query: 145 LPLSVGFVAQYIIKPILGVLIAKAFGIPQIFYAGFVLTACVSGAQLSSYASFLSKGDVAV 204
             L+ GF+ QY + P+ G LI+K   +P  + AG +L +C  G   S+  ++L++G+VA+
Sbjct: 160 KELASGFLLQYSVMPLSGFLISKLLNLPSYYAAGLILVSCCPGGTASNIVTYLARGNVAL 219

Query: 205 SILLSSSTTIASVLITPLLTGLLIGSVIPVDAVAMSKSILQVVLVPVALGLGLNTYAKPV 264
           S+L+++++T A+  +TPLLT  L G  + VD + +  S  QVVL PV LG  LN Y   +
Sbjct: 220 SVLMTAASTFAAAFLTPLLTSKLAGQYVAVDPMGLFVSTSQVVLAPVLLGALLNQYCNGL 279

Query: 265 VSFLRPVMPFVAMICTSLCIGSPLAINRSQILSIEGLQLVLPVLTFHAVAFAVGYWVSKI 324
           V  + P+MPF+A+   ++  G+ +A N S ILS  GLQ+V+ V   HA  F  GY +S+ 
Sbjct: 280 VQLVSPLMPFIAVATVAVLCGNAIAQNASAILS-SGLQVVMSVCWLHASGFFFGYVLSRT 338

Query: 325 PSWRQGEEV--SRTISLCTGMQSSTLAGLLATQFLGSS-QAVPPACSVIAMAIMGLCLAS 381
                G ++  SRTIS+  GMQ+S L  +LA++  G+   AVP A S +  ++ G  LA 
Sbjct: 339 ----IGIDISSSRTISIEVGMQNSVLGVVLASKHFGNPLTAVPCAVSSVCHSVYGSLLAG 394

Query: 382 FWGS 385
            W S
Sbjct: 395 IWRS 398

May function as sodium-coupled metabolite transporter across the chloroplast envelope.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	406
224129384	417	bile acid:Na+ symporter family protein [	0.975	0.949	0.761	1e-164
359494758	411	PREDICTED: uncharacterized sodium-depend	0.911	0.900	0.798	1e-158
297835644	424	bile acid:sodium symporter family protei	0.896	0.858	0.778	1e-155
449465294	433	PREDICTED: probable sodium/metabolite co	0.903	0.847	0.760	1e-154
21554890	431	unknown [Arabidopsis thaliana]	0.881	0.830	0.772	1e-154
18404505	431	putative sodium-bile acid cotransporter	0.881	0.830	0.769	1e-154
449513003	436	PREDICTED: probable sodium/metabolite co	0.881	0.821	0.770	1e-153
357505079	416	Sodium-dependent transporter, putative [	0.884	0.862	0.768	1e-149
356527288	417	PREDICTED: uncharacterized sodium-depend	0.891	0.868	0.769	1e-146
255572652	356	sodium-bile acid cotransporter, putative	0.830	0.946	0.765	1e-142

>gi|224129384|ref|XP_002320573.1| bile acid:Na+ symporter family protein [Populus trichocarpa] gi|222861346|gb|EEE98888.1| bile acid:Na+ symporter family protein [Populus trichocarpa]

 Score =  584 bits (1506), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 310/407 (76%), Positives = 348/407 (85%), Gaps = 11/407 (2%)

Query: 1   MASLLNLTP---PKLCIQKRN------TALHSFRCNSI--LKPQKSVKANGGLCTLACST 49
           MA + +++P   PKL I  +       T+  SF C+S+   +  K    NG L T ACST
Sbjct: 1   MALISSISPIPVPKLSISTKAQNFVSLTSYSSFTCHSLPMKRLNKGWPKNGALFTFACST 60

Query: 50  SPFVGRVGLQRREGNVSLLSFGINAGSVVARYDSSQVLSAMLPFVVALTAVAALAQPSTF 109
           SPF+GRVG QRREGNVSLL FGIN  + V + DSSQVLSAMLPFVVA TA+AALAQP+TF
Sbjct: 61  SPFIGRVGSQRREGNVSLLHFGINPNAEVEKTDSSQVLSAMLPFVVAATAIAALAQPATF 120

Query: 110 TWVSKELYAPALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVLIAKAF 169
           TWVSKELYAPALGGIMLSIGI+LSI DFA A KRPLPLSVGF+AQY++KP LGVLIAKAF
Sbjct: 121 TWVSKELYAPALGGIMLSIGIKLSIHDFAPAIKRPLPLSVGFIAQYVLKPGLGVLIAKAF 180

Query: 170 GIPQIFYAGFVLTACVSGAQLSSYASFLSKGDVAVSILLSSSTTIASVLITPLLTGLLIG 229
           G+ Q+F+AGFVLT+CV+GAQLSSYASFLSKGDVA+SILL+SSTTIASVL TPLLTGLLIG
Sbjct: 181 GMSQMFFAGFVLTSCVAGAQLSSYASFLSKGDVALSILLTSSTTIASVLFTPLLTGLLIG 240

Query: 230 SVIPVDAVAMSKSILQVVLVPVALGLGLNTYAKPVVSFLRPVMPFVAMICTSLCIGSPLA 289
           SV+PVDA+AMSKSILQVVL+PVALGL LNTYAK VV+ L PVMPFVAM+CTSLCIGSPLA
Sbjct: 241 SVVPVDAIAMSKSILQVVLIPVALGLVLNTYAKEVVNLLNPVMPFVAMVCTSLCIGSPLA 300

Query: 290 INRSQILSIEGLQLVLPVLTFHAVAFAVGYWVSKIPSWRQGEEVSRTISLCTGMQSSTLA 349
           INRSQILS EGL L+ PVLTFHAVAF +GYWVSKIP+ RQ EE SRTISLCTGMQSSTLA
Sbjct: 301 INRSQILSKEGLWLIFPVLTFHAVAFTLGYWVSKIPALRQEEEASRTISLCTGMQSSTLA 360

Query: 350 GLLATQFLGSSQAVPPACSVIAMAIMGLCLASFWGSGSRIRDLTNIL 396
           GLLAT FLGS+QAVPPACSV+AMAIMGLCLASFWG+G RIRD+ + L
Sbjct: 361 GLLATHFLGSTQAVPPACSVVAMAIMGLCLASFWGNGYRIRDIPSYL 407

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494758|ref|XP_002263684.2| PREDICTED: uncharacterized sodium-dependent transporter yocS-like [Vitis vinifera] gi|297742832|emb|CBI35586.3| unnamed protein product [Vitis vinifera]

 Score =  563 bits (1452), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 297/372 (79%), Positives = 328/372 (88%), Gaps = 2/372 (0%)

Query: 27  NSILKPQKSVKANGGLCTLACSTSPFVGRVGLQRREGNVSLLSFGINAG--SVVARYDSS 84
            SI  P +  ++       ACST+ F+GRVG  RREGNVS+LSFGIN G  S +   DSS
Sbjct: 29  TSISIPTRRRRSPVPAMAFACSTTSFIGRVGFHRREGNVSILSFGINPGPISEIPTTDSS 88

Query: 85  QVLSAMLPFVVALTAVAALAQPSTFTWVSKELYAPALGGIMLSIGIRLSIEDFALAFKRP 144
           Q+LSA+LPFVVA TAVAALAQPSTFTWVS+ELYAPALGGIMLSIGIRLSI+DFALAF+RP
Sbjct: 89  QLLSALLPFVVAATAVAALAQPSTFTWVSRELYAPALGGIMLSIGIRLSIDDFALAFQRP 148

Query: 145 LPLSVGFVAQYIIKPILGVLIAKAFGIPQIFYAGFVLTACVSGAQLSSYASFLSKGDVAV 204
           LPLS+GF+AQY +KP LGVLIA+A G+ Q+FYAGFVLTACV+GAQLSSYASFLSKGDVA+
Sbjct: 149 LPLSIGFMAQYALKPALGVLIARALGMSQLFYAGFVLTACVAGAQLSSYASFLSKGDVAL 208

Query: 205 SILLSSSTTIASVLITPLLTGLLIGSVIPVDAVAMSKSILQVVLVPVALGLGLNTYAKPV 264
           SILL+SSTTIASVL+TPLLTGLLIGSV+PVDAVAMSKSILQVVLVPV LGL LNTYAKPV
Sbjct: 209 SILLTSSTTIASVLVTPLLTGLLIGSVVPVDAVAMSKSILQVVLVPVTLGLALNTYAKPV 268

Query: 265 VSFLRPVMPFVAMICTSLCIGSPLAINRSQILSIEGLQLVLPVLTFHAVAFAVGYWVSKI 324
           V+ LRPVMP VAM+CTSLCIGSPLAINRSQILS EGL+LV PVL FH VAF VGYWVSKI
Sbjct: 269 VNLLRPVMPLVAMVCTSLCIGSPLAINRSQILSAEGLRLVFPVLAFHTVAFTVGYWVSKI 328

Query: 325 PSWRQGEEVSRTISLCTGMQSSTLAGLLATQFLGSSQAVPPACSVIAMAIMGLCLASFWG 384
           P +RQ EEV RTISLCTGMQSSTLAGLLATQFLG SQAVPPACSV+AMAIMGL LASFWG
Sbjct: 329 PIFRQEEEVCRTISLCTGMQSSTLAGLLATQFLGGSQAVPPACSVVAMAIMGLSLASFWG 388

Query: 385 SGSRIRDLTNIL 396
           +G RIRDL ++L
Sbjct: 389 NGGRIRDLPSLL 400

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297835644|ref|XP_002885704.1| bile acid:sodium symporter family protein [Arabidopsis lyrata subsp. lyrata] gi|297331544|gb|EFH61963.1| bile acid:sodium symporter family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  554 bits (1428), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 285/366 (77%), Positives = 322/366 (87%), Gaps = 2/366 (0%)

Query: 37  KANGGLC-TLACSTSPFVGRVGLQRREGNVSLLSFGINAGSVVARYDSSQVLSAMLPFVV 95
           + NGGL   +ACST+PF+GRVGL  R+GN+SLLSF      V  R DSSQ  SA+LPFVV
Sbjct: 54  RRNGGLVPVVACSTTPFMGRVGLHWRDGNMSLLSF-CGGTDVTERADSSQFWSALLPFVV 112

Query: 96  ALTAVAALAQPSTFTWVSKELYAPALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQY 155
           ALTAVAAL  P +FTWVSKELYAPALGGIMLSIGI+LSI+DFALAFKRP+PLSVGFVAQY
Sbjct: 113 ALTAVAALCYPPSFTWVSKELYAPALGGIMLSIGIQLSIDDFALAFKRPVPLSVGFVAQY 172

Query: 156 IIKPILGVLIAKAFGIPQIFYAGFVLTACVSGAQLSSYASFLSKGDVAVSILLSSSTTIA 215
           ++KP+LGVLIA AFG+P+ FYAGFVLT CV+GAQLSSYAS LSK DVA+SILL+SSTTIA
Sbjct: 173 VLKPLLGVLIANAFGMPRTFYAGFVLTCCVAGAQLSSYASSLSKADVAMSILLTSSTTIA 232

Query: 216 SVLITPLLTGLLIGSVIPVDAVAMSKSILQVVLVPVALGLGLNTYAKPVVSFLRPVMPFV 275
           SV+ TPLL+GLLIGSV+PVDAVAMSKSILQVVLVPV+LGL LNTYAKPVV+ L+PVMPFV
Sbjct: 233 SVIFTPLLSGLLIGSVVPVDAVAMSKSILQVVLVPVSLGLVLNTYAKPVVTLLQPVMPFV 292

Query: 276 AMICTSLCIGSPLAINRSQILSIEGLQLVLPVLTFHAVAFAVGYWVSKIPSWRQGEEVSR 335
           AM+CTSLCIGSPL+INRSQILS EGL L++P++TFHAVAF +GYW SKIP  RQ EEVSR
Sbjct: 293 AMVCTSLCIGSPLSINRSQILSAEGLGLIVPIVTFHAVAFVLGYWFSKIPGLRQEEEVSR 352

Query: 336 TISLCTGMQSSTLAGLLATQFLGSSQAVPPACSVIAMAIMGLCLASFWGSGSRIRDLTNI 395
           TISLCTGMQSSTLAGLLA+QFLGSSQAVP ACSV+ MAIMGLCLASFWG+G RIRD  ++
Sbjct: 353 TISLCTGMQSSTLAGLLASQFLGSSQAVPAACSVVVMAIMGLCLASFWGNGFRIRDFLSL 412

Query: 396 LNWHSS 401
               SS
Sbjct: 413 STPQSS 418

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449465294|ref|XP_004150363.1| PREDICTED: probable sodium/metabolite cotransporter BASS3, chloroplastic-like [Cucumis sativus]

 Score =  551 bits (1421), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 282/371 (76%), Positives = 325/371 (87%), Gaps = 4/371 (1%)

Query: 39  NGGLCTLACSTSPFVGRVGLQRREGNVSLLSFGINAGSVVARY----DSSQVLSAMLPFV 94
           NG L T ACSTSPF+GRVG + R GN SLLSFG+N+ +  A      DSSQ+LSA+LPFV
Sbjct: 62  NGALSTFACSTSPFIGRVGSRIRLGNFSLLSFGLNSNAAAAAEGAGGDSSQLLSALLPFV 121

Query: 95  VALTAVAALAQPSTFTWVSKELYAPALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQ 154
           VA T ++AL+ PSTF WV K+LYAPALGGIMLSIGI+LSI DFALA KRP+PLSVGFVAQ
Sbjct: 122 VAATGISALSWPSTFNWVPKDLYAPALGGIMLSIGIKLSINDFALAMKRPVPLSVGFVAQ 181

Query: 155 YIIKPILGVLIAKAFGIPQIFYAGFVLTACVSGAQLSSYASFLSKGDVAVSILLSSSTTI 214
           Y++KP LGVLIA+AFGI  +FYAGF+LTACV GAQLSSYASFLSKGD+A+SILL+S TTI
Sbjct: 182 YVLKPALGVLIARAFGISPMFYAGFLLTACVGGAQLSSYASFLSKGDIALSILLTSFTTI 241

Query: 215 ASVLITPLLTGLLIGSVIPVDAVAMSKSILQVVLVPVALGLGLNTYAKPVVSFLRPVMPF 274
           +SVL+TPLLTG+LIGSV+PVDAVAMSKSILQVVL+PVALGL LN+YAKP+V+ L+PVMPF
Sbjct: 242 SSVLLTPLLTGILIGSVVPVDAVAMSKSILQVVLLPVALGLVLNSYAKPIVAILQPVMPF 301

Query: 275 VAMICTSLCIGSPLAINRSQILSIEGLQLVLPVLTFHAVAFAVGYWVSKIPSWRQGEEVS 334
           VAM+CTSLCIGSPLAIN+SQILSI+G +LVLPVL FH +AF +GYW SKIP  RQ EE S
Sbjct: 302 VAMVCTSLCIGSPLAINKSQILSIDGARLVLPVLVFHTMAFTLGYWASKIPIVRQEEEAS 361

Query: 335 RTISLCTGMQSSTLAGLLATQFLGSSQAVPPACSVIAMAIMGLCLASFWGSGSRIRDLTN 394
           RTISLCTGMQSSTLAGLLATQFLGS+ AVPPACSV+ MAIMGLCLASFWGSGS+IRDL +
Sbjct: 362 RTISLCTGMQSSTLAGLLATQFLGSTHAVPPACSVVVMAIMGLCLASFWGSGSKIRDLPS 421

Query: 395 ILNWHSSSAAN 405
           +L   +SS A+
Sbjct: 422 LLVQKTSSIAS 432

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21554890|gb|AAM63721.1| unknown [Arabidopsis thaliana]

 Score =  551 bits (1419), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 278/360 (77%), Positives = 321/360 (89%), Gaps = 2/360 (0%)

Query: 37  KANGGLC-TLACSTSPFVGRVGLQRREGNVSLLSFGINAGSVVARYDSSQVLSAMLPFVV 95
           + N GL   +ACST+PF+GRVGL  R+GN+SLLSF      V  R DSSQ  SA+LPFVV
Sbjct: 61  RRNSGLVPVVACSTTPFMGRVGLHWRDGNMSLLSF-CGGTDVTERADSSQFWSALLPFVV 119

Query: 96  ALTAVAALAQPSTFTWVSKELYAPALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQY 155
           ALTAVAAL+ P +FTWVSK+LYAPALGGIMLSIGI+LS++DFALAFKRP+PLSVGFVAQY
Sbjct: 120 ALTAVAALSYPPSFTWVSKDLYAPALGGIMLSIGIQLSVDDFALAFKRPVPLSVGFVAQY 179

Query: 156 IIKPILGVLIAKAFGIPQIFYAGFVLTACVSGAQLSSYASFLSKGDVAVSILLSSSTTIA 215
           ++KP+LGVL+A AFG+P+ FYAGF+LT CV+GAQLSSYAS LSK DVA+SILL+SSTTIA
Sbjct: 180 VLKPLLGVLVANAFGMPRTFYAGFILTCCVAGAQLSSYASSLSKADVAMSILLTSSTTIA 239

Query: 216 SVLITPLLTGLLIGSVIPVDAVAMSKSILQVVLVPVALGLGLNTYAKPVVSFLRPVMPFV 275
           SV+ TPLL+GLLIGSV+PVDAVAMSKSILQVVLVP+ LGL LNTYAKPVV+ L+PVMPFV
Sbjct: 240 SVIFTPLLSGLLIGSVVPVDAVAMSKSILQVVLVPITLGLVLNTYAKPVVTLLQPVMPFV 299

Query: 276 AMICTSLCIGSPLAINRSQILSIEGLQLVLPVLTFHAVAFAVGYWVSKIPSWRQGEEVSR 335
           AM+CTSLCIGSPL+INRSQILS EGL L++P++TFHAVAFA+GYW SKIP  RQ EEVSR
Sbjct: 300 AMVCTSLCIGSPLSINRSQILSAEGLGLIVPIVTFHAVAFALGYWFSKIPGLRQEEEVSR 359

Query: 336 TISLCTGMQSSTLAGLLATQFLGSSQAVPPACSVIAMAIMGLCLASFWGSGSRIRDLTNI 395
           TISLCTGMQSSTLAGLLA+QFLGSSQAVP ACSV+ MAIMGLCLASFWG+G RIRD+ ++
Sbjct: 360 TISLCTGMQSSTLAGLLASQFLGSSQAVPAACSVVVMAIMGLCLASFWGNGFRIRDVLSL 419

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18404505|ref|NP_566764.1| putative sodium-bile acid cotransporter [Arabidopsis thaliana] gi|75158846|sp|Q8RXE8.1|BASS3_ARATH RecName: Full=Probable sodium/metabolite cotransporter BASS3, chloroplastic; AltName: Full=Bile acid transporter 3; AltName: Full=Bile acid-sodium symporter family protein 3; Flags: Precursor gi|19698909|gb|AAL91190.1| unknown protein [Arabidopsis thaliana] gi|22136206|gb|AAM91181.1| unknown protein [Arabidopsis thaliana] gi|332643487|gb|AEE77008.1| putative sodium-bile acid cotransporter [Arabidopsis thaliana]

 Score =  549 bits (1415), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 277/360 (76%), Positives = 321/360 (89%), Gaps = 2/360 (0%)

Query: 37  KANGGLC-TLACSTSPFVGRVGLQRREGNVSLLSFGINAGSVVARYDSSQVLSAMLPFVV 95
           + N GL   +ACST+PF+GRVGL  R+GN+SLLSF      V  + DSSQ  SA+LPFVV
Sbjct: 61  RRNSGLVPVVACSTTPFMGRVGLHWRDGNMSLLSF-CGGTDVTEKADSSQFWSALLPFVV 119

Query: 96  ALTAVAALAQPSTFTWVSKELYAPALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQY 155
           ALTAVAAL+ P +FTWVSK+LYAPALGGIMLSIGI+LS++DFALAFKRP+PLSVGFVAQY
Sbjct: 120 ALTAVAALSYPPSFTWVSKDLYAPALGGIMLSIGIQLSVDDFALAFKRPVPLSVGFVAQY 179

Query: 156 IIKPILGVLIAKAFGIPQIFYAGFVLTACVSGAQLSSYASFLSKGDVAVSILLSSSTTIA 215
           ++KP+LGVL+A AFG+P+ FYAGF+LT CV+GAQLSSYAS LSK DVA+SILL+SSTTIA
Sbjct: 180 VLKPLLGVLVANAFGMPRTFYAGFILTCCVAGAQLSSYASSLSKADVAMSILLTSSTTIA 239

Query: 216 SVLITPLLTGLLIGSVIPVDAVAMSKSILQVVLVPVALGLGLNTYAKPVVSFLRPVMPFV 275
           SV+ TPLL+GLLIGSV+PVDAVAMSKSILQVVLVP+ LGL LNTYAKPVV+ L+PVMPFV
Sbjct: 240 SVIFTPLLSGLLIGSVVPVDAVAMSKSILQVVLVPITLGLVLNTYAKPVVTLLQPVMPFV 299

Query: 276 AMICTSLCIGSPLAINRSQILSIEGLQLVLPVLTFHAVAFAVGYWVSKIPSWRQGEEVSR 335
           AM+CTSLCIGSPL+INRSQILS EGL L++P++TFHAVAFA+GYW SKIP  RQ EEVSR
Sbjct: 300 AMVCTSLCIGSPLSINRSQILSAEGLGLIVPIVTFHAVAFALGYWFSKIPGLRQEEEVSR 359

Query: 336 TISLCTGMQSSTLAGLLATQFLGSSQAVPPACSVIAMAIMGLCLASFWGSGSRIRDLTNI 395
           TISLCTGMQSSTLAGLLA+QFLGSSQAVP ACSV+ MAIMGLCLASFWG+G RIRD+ ++
Sbjct: 360 TISLCTGMQSSTLAGLLASQFLGSSQAVPAACSVVVMAIMGLCLASFWGNGFRIRDVLSL 419

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449513003|ref|XP_004164201.1| PREDICTED: probable sodium/metabolite cotransporter BASS3, chloroplastic-like [Cucumis sativus]

 Score =  548 bits (1412), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 279/362 (77%), Positives = 320/362 (88%), Gaps = 4/362 (1%)

Query: 39  NGGLCTLACSTSPFVGRVGLQRREGNVSLLSFGINAGSVVARY----DSSQVLSAMLPFV 94
           NG L T ACSTSPF+GRVG + R GN SLLSFG+N+ +  A      DSSQ+LSA+LPFV
Sbjct: 62  NGALSTFACSTSPFIGRVGSRIRLGNFSLLSFGLNSNAAAAAEGAGGDSSQLLSALLPFV 121

Query: 95  VALTAVAALAQPSTFTWVSKELYAPALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQ 154
           VA T ++AL+ PSTF WV K+LYAPALGGIMLSIGI+LSI DFALA KRP+PLSVGFVAQ
Sbjct: 122 VAATGISALSWPSTFNWVPKDLYAPALGGIMLSIGIKLSINDFALAMKRPVPLSVGFVAQ 181

Query: 155 YIIKPILGVLIAKAFGIPQIFYAGFVLTACVSGAQLSSYASFLSKGDVAVSILLSSSTTI 214
           Y++KP LGVLIA+AFGI  +FYAGF+LTACV GAQLSSYASFLSKGD+A+SILL+S TTI
Sbjct: 182 YVLKPALGVLIARAFGISPMFYAGFLLTACVGGAQLSSYASFLSKGDIALSILLTSFTTI 241

Query: 215 ASVLITPLLTGLLIGSVIPVDAVAMSKSILQVVLVPVALGLGLNTYAKPVVSFLRPVMPF 274
           +SVL+TPLLTG+LIGSV+PVDAVAMSKSILQVVL+PVALGL LN+YAKP+V+ L+PVMPF
Sbjct: 242 SSVLLTPLLTGILIGSVVPVDAVAMSKSILQVVLLPVALGLVLNSYAKPIVAILQPVMPF 301

Query: 275 VAMICTSLCIGSPLAINRSQILSIEGLQLVLPVLTFHAVAFAVGYWVSKIPSWRQGEEVS 334
           VAM+CTSLCIGSPLAIN+SQILSI+G +LVLPVL FH +AF +GYW SKIP  RQ EE S
Sbjct: 302 VAMVCTSLCIGSPLAINKSQILSIDGARLVLPVLVFHTMAFTLGYWASKIPIVRQEEEAS 361

Query: 335 RTISLCTGMQSSTLAGLLATQFLGSSQAVPPACSVIAMAIMGLCLASFWGSGSRIRDLTN 394
           RTISLCTGMQSSTLAGLLATQFLGS+ AVPPACSV+ MAIMGLCLASFWGSGS+IRDL +
Sbjct: 362 RTISLCTGMQSSTLAGLLATQFLGSTHAVPPACSVVVMAIMGLCLASFWGSGSKIRDLPS 421

Query: 395 IL 396
           +L
Sbjct: 422 LL 423

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357505079|ref|XP_003622828.1| Sodium-dependent transporter, putative [Medicago truncatula] gi|355497843|gb|AES79046.1| Sodium-dependent transporter, putative [Medicago truncatula]

 Score =  533 bits (1374), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 282/367 (76%), Positives = 314/367 (85%), Gaps = 8/367 (2%)

Query: 34  KSVKANGGLCTLACSTSPFVG-RVGLQRREGNVSLLSFGINAGSVVA-------RYDSSQ 85
           + V     + + ACSTS   G RVG   REG  S L FG++   V           D SQ
Sbjct: 35  QRVSKGCSISSFACSTSKLHGGRVGFNHREGKTSFLKFGVDESVVGGGGNGDVGERDWSQ 94

Query: 86  VLSAMLPFVVALTAVAALAQPSTFTWVSKELYAPALGGIMLSIGIRLSIEDFALAFKRPL 145
           +LSA+LPFVVA+TAVAAL+QPSTFTWVSKELYAPALGGIMLSIGI LS+EDFALAFKRPL
Sbjct: 95  ILSALLPFVVAVTAVAALSQPSTFTWVSKELYAPALGGIMLSIGIGLSMEDFALAFKRPL 154

Query: 146 PLSVGFVAQYIIKPILGVLIAKAFGIPQIFYAGFVLTACVSGAQLSSYASFLSKGDVAVS 205
           PLS+GF+AQY++KP+LGVLIAKAFG+P++FYAGFVLTACVSGAQLSSYASF+SKGDVA+ 
Sbjct: 155 PLSIGFIAQYVLKPVLGVLIAKAFGLPRMFYAGFVLTACVSGAQLSSYASFISKGDVALC 214

Query: 206 ILLSSSTTIASVLITPLLTGLLIGSVIPVDAVAMSKSILQVVLVPVALGLGLNTYAKPVV 265
           I+L+S TTIASV++TPLLTGLLIGSV+PVDAVAMSKSILQVVL PV LGL LNTYAKPVV
Sbjct: 215 IVLTSYTTIASVIVTPLLTGLLIGSVVPVDAVAMSKSILQVVLAPVTLGLLLNTYAKPVV 274

Query: 266 SFLRPVMPFVAMICTSLCIGSPLAINRSQILSIEGLQLVLPVLTFHAVAFAVGYWVSKIP 325
           S LRPVMPFVAMICTSLCIGSPLAINRSQILS EGL+LV PVL FHA AF +GYW S +P
Sbjct: 275 SILRPVMPFVAMICTSLCIGSPLAINRSQILSGEGLRLVAPVLIFHAAAFTLGYWFSNLP 334

Query: 326 SWRQGEEVSRTISLCTGMQSSTLAGLLATQFLGSSQAVPPACSVIAMAIMGLCLASFWGS 385
           S RQ E+VSRTISLCTGMQSSTLAGLLATQFLGSSQAVPPACSV+AMAIMGLCLASFWG 
Sbjct: 335 SLRQEEQVSRTISLCTGMQSSTLAGLLATQFLGSSQAVPPACSVVAMAIMGLCLASFWGK 394

Query: 386 GSRIRDL 392
           G  I++L
Sbjct: 395 GFEIKNL 401

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527288|ref|XP_003532243.1| PREDICTED: uncharacterized sodium-dependent transporter yocS-like [Glycine max]

 Score =  524 bits (1349), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 284/369 (76%), Positives = 319/369 (86%), Gaps = 7/369 (1%)

Query: 45  LACSTSPFVGRVGLQ--RREGNVSLLSFG-INAGSVVA----RYDSSQVLSAMLPFVVAL 97
            ACSTS F G  G +  RR+G  SLLSFG  + GS V       D SQ+LSA+LP VVA 
Sbjct: 49  FACSTSQFRGGFGFRFHRRQGKFSLLSFGGDDDGSAVGGEARERDLSQLLSALLPVVVAA 108

Query: 98  TAVAALAQPSTFTWVSKELYAPALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYII 157
           TAVAALA+PSTFTWVSKELYAPALGGIMLSIGIRLS++DFALAFKRPLPL++G +AQY++
Sbjct: 109 TAVAALAKPSTFTWVSKELYAPALGGIMLSIGIRLSVDDFALAFKRPLPLTIGLIAQYVL 168

Query: 158 KPILGVLIAKAFGIPQIFYAGFVLTACVSGAQLSSYASFLSKGDVAVSILLSSSTTIASV 217
           KP+LG+L+AKAFG+ ++FYAGFVLTACVSGAQLSSYA+FLSKGDVA+ ILL+S TTIASV
Sbjct: 169 KPVLGILVAKAFGLSRMFYAGFVLTACVSGAQLSSYANFLSKGDVALGILLTSYTTIASV 228

Query: 218 LITPLLTGLLIGSVIPVDAVAMSKSILQVVLVPVALGLGLNTYAKPVVSFLRPVMPFVAM 277
           ++TPLLTGLLIGSV+PVDAVAMSKSILQVVLVPV LGL LNTYAK VVS L+PVMPFVAM
Sbjct: 229 IVTPLLTGLLIGSVVPVDAVAMSKSILQVVLVPVTLGLLLNTYAKSVVSVLQPVMPFVAM 288

Query: 278 ICTSLCIGSPLAINRSQILSIEGLQLVLPVLTFHAVAFAVGYWVSKIPSWRQGEEVSRTI 337
           ICTSLCIGSPLA+NRSQIL+ EGL+LV PVLTFH VAF +GYW SKIPS RQ E+VSRTI
Sbjct: 289 ICTSLCIGSPLALNRSQILTGEGLRLVFPVLTFHVVAFTLGYWFSKIPSLRQEEQVSRTI 348

Query: 338 SLCTGMQSSTLAGLLATQFLGSSQAVPPACSVIAMAIMGLCLASFWGSGSRIRDLTNILN 397
           SLCTGMQSSTLAGLLATQFL SSQAVPPACSVIAMAIMGLCLASFWGSG  IR+L  +  
Sbjct: 349 SLCTGMQSSTLAGLLATQFLDSSQAVPPACSVIAMAIMGLCLASFWGSGFVIRNLLPLPP 408

Query: 398 WHSSSAANT 406
             ++SA  T
Sbjct: 409 LRTNSAVKT 417

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255572652|ref|XP_002527259.1| sodium-bile acid cotransporter, putative [Ricinus communis] gi|223533352|gb|EEF35103.1| sodium-bile acid cotransporter, putative [Ricinus communis]

 Score =  511 bits (1317), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 265/346 (76%), Positives = 305/346 (88%), Gaps = 9/346 (2%)

Query: 61  REGNVSLLSFGINAGSV---------VARYDSSQVLSAMLPFVVALTAVAALAQPSTFTW 111
           REGN SLL FGIN  +              DSSQ+LSAMLPFVVA+TAVAALAQPSTFTW
Sbjct: 2   REGNASLLYFGINNSNAEVAAITKTKTKTSDSSQLLSAMLPFVVAITAVAALAQPSTFTW 61

Query: 112 VSKELYAPALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVLIAKAFGI 171
           VSK++YAPALGGIMLSIGI+LSI DFALA KRP+PLSVG++AQY++KP+LGVL+AKA G+
Sbjct: 62  VSKDMYAPALGGIMLSIGIKLSIADFALALKRPIPLSVGYLAQYVMKPVLGVLLAKACGL 121

Query: 172 PQIFYAGFVLTACVSGAQLSSYASFLSKGDVAVSILLSSSTTIASVLITPLLTGLLIGSV 231
            ++FYAGFVLT+CV+GAQLSSYASFLSKGDVA+SILL+S+TTI SVL+TPLLTGLLIGSV
Sbjct: 122 SEMFYAGFVLTSCVAGAQLSSYASFLSKGDVAMSILLTSTTTITSVLVTPLLTGLLIGSV 181

Query: 232 IPVDAVAMSKSILQVVLVPVALGLGLNTYAKPVVSFLRPVMPFVAMICTSLCIGSPLAIN 291
           +PVDA+AMSKSILQVVL PV LGL LNTYAKPVV+ ++P+MPFVAMICTS+CIGSPLAIN
Sbjct: 182 VPVDAIAMSKSILQVVLAPVTLGLMLNTYAKPVVNIIQPLMPFVAMICTSICIGSPLAIN 241

Query: 292 RSQILSIEGLQLVLPVLTFHAVAFAVGYWVSKIPSWRQGEEVSRTISLCTGMQSSTLAGL 351
           RSQILS +G +LV PVL FH VAF +GYW+S+IP  R  EEVSRTISLCTGMQSSTLAGL
Sbjct: 242 RSQILSAQGFRLVFPVLAFHTVAFTLGYWISRIPFLRLDEEVSRTISLCTGMQSSTLAGL 301

Query: 352 LATQFLGSSQAVPPACSVIAMAIMGLCLASFWGSGSRIRDLTNILN 397
           LATQFLG++QAVPPACSV+AMAIMGL LASFWG+G RIRDL ++L 
Sbjct: 302 LATQFLGTTQAVPPACSVVAMAIMGLSLASFWGNGYRIRDLPSLLT 347

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	406
TAIR|locus:2094483	431	AT3G25410 "AT3G25410" [Arabido	0.926	0.872	0.623	3.7e-119
TAIR|locus:2039533	409	BASS2 "AT2G26900" [Arabidopsis	0.743	0.738	0.344	5.7e-43
TAIR|locus:2132664	409	AT4G22840 "AT4G22840" [Arabido	0.812	0.806	0.310	1.6e-40
TAIR|locus:2118021	407	BAT5 "AT4G12030" [Arabidopsis	0.677	0.675	0.346	1.6e-38
TAIR|locus:2202935	401	AT1G78560 "AT1G78560" [Arabido	0.908	0.920	0.287	2.3e-30
UNIPROTKB|Q8E8Y1	308	SO_4519 "Sodium-dependent tran	0.748	0.987	0.241	8.7e-24
TIGR_CMR|SO_4519	308	SO_4519 "sodium-dependent tran	0.748	0.987	0.241	8.7e-24
TIGR_CMR|BA_3574	322	BA_3574 "bile acid transporter	0.652	0.822	0.257	3.4e-22
MGI|MGI:2685251	434	Slc10a5 "solute carrier family	0.221	0.207	0.279	8.3e-06
RGD|1306036	434	Slc10a5 "solute carrier family	0.184	0.172	0.28	5.2e-05

TAIR|locus:2094483 AT3G25410 "AT3G25410" [Arabidopsis thaliana (taxid:3702)]

 Score = 1173 (418.0 bits), Expect = 3.7e-119, P = 3.7e-119
 Identities = 235/377 (62%), Positives = 280/377 (74%)

Query:    19 TALHSFRCNSILKPQKSVKANGGLCTLACSTSPFVGRVGLQRREGNVSLLSFGINAGSVV 78
             ++LHS   ++ L  +   + +G +  +ACST+PF+GRVGL  R+GN+SLLSF      V 
Sbjct:    44 SSLHSSSLSNFLDFRLRRRNSGLVPVVACSTTPFMGRVGLHWRDGNMSLLSF-CGGTDVT 102

Query:    79 ARYDSSQVLSAMLPFXXXXXXXXXXXQPSTFTWVSKELYAPALGGIMLSIGIRLSIEDFA 138
              + DSSQ  SA+LPF            P +FTWVSK+LYAPALGGIMLSIGI+LS++DFA
Sbjct:   103 EKADSSQFWSALLPFVVALTAVAALSYPPSFTWVSKDLYAPALGGIMLSIGIQLSVDDFA 162

Query:   139 LAFKRPLPLSVGFVAQYIIKPILGVLIAKAFGIPQIFYAGFVLTACVSGAQLSSYASFLS 198
             LAFKRP+PLSVGFVAQY++KP+LGVL+A AFG+P+ FYAGF+LT CV+GAQLSSYAS LS
Sbjct:   163 LAFKRPVPLSVGFVAQYVLKPLLGVLVANAFGMPRTFYAGFILTCCVAGAQLSSYASSLS 222

Query:   199 KGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVIPVDAVAMSKSIXXXXXXXXXXXXXXN 258
             K D                            SV+PVDAVAMSKSI              N
Sbjct:   223 KADVAMSILLTSSTTIASVIFTPLLSGLLIGSVVPVDAVAMSKSILQVVLVPITLGLVLN 282

Query:   259 TYAKPVVSFLRPVMPFVAMICTSLCIGSPLAINRSQILSIEGLQLVLPVLTFHAVAFAVG 318
             TYAKPVV+ L+PVMPFVAM+CTSLCIGSPL+INRSQILS EGL L++P++TFHAVAFA+G
Sbjct:   283 TYAKPVVTLLQPVMPFVAMVCTSLCIGSPLSINRSQILSAEGLGLIVPIVTFHAVAFALG 342

Query:   319 YWVSKIPSWRQGEEVSRTISLCTGMQSSTLAGLLATQFLGSSQAVPPACSVIAMAIMGLC 378
             YW SKIP  RQ EEVSRTISLCTGMQSSTLAGLLA+QFLGSSQAVP ACSV+ MAIMGLC
Sbjct:   343 YWFSKIPGLRQEEEVSRTISLCTGMQSSTLAGLLASQFLGSSQAVPAACSVVVMAIMGLC 402

Query:   379 LASFWGSGSRIRDLTNI 395
             LASFWG+G RIRD+ ++
Sbjct:   403 LASFWGNGFRIRDVLSL 419

GO:0005215 "transporter activity" evidence=ISS

GO:0006814 "sodium ion transport" evidence=IEA;ISS

GO:0008508 "bile acid:sodium symporter activity" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=ISS

GO:0035725 "sodium ion transmembrane transport" evidence=IEA;ISS

GO:0009941 "chloroplast envelope" evidence=IDA

TAIR|locus:2039533 BASS2 "AT2G26900" [Arabidopsis thaliana (taxid:3702)]

 Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
 Identities = 106/308 (34%), Positives = 155/308 (50%)

Query:    78 VARYDSS-QVLSAMLPFXXXXXXXXXXXQPSTFTWVSKELYAPALGGIMLSIGIRLSIED 136
             +++Y+   ++L+ + P            +PS  TW+  +L+   LG +MLS+G+ L+ ED
Sbjct:    91 LSQYEKIIELLTTLFPLWVILGTLVGIFKPSLVTWLETDLFTLGLGFLMLSMGLTLTFED 150

Query:   137 FALAFKRPLPLSVGFVAQYIIKPILGVLIAKAFGIPQIFYAGFVLTACVSGAQLSSYASF 196
             F    + P  + VGF+AQY+IKPILG LIA    +      G +L +C  G Q S+ A++
Sbjct:   151 FRRCLRNPWTVGVGFLAQYMIKPILGFLIAMTLKLSAPLATGLILVSCCPGGQASNVATY 210

Query:   197 LSKGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVIPVDAVAMSKSIXXXXXXXXXXXXX 256
             +SKG+                             ++PVDA  ++ S              
Sbjct:   211 ISKGNVALSVLMTTCSTIGAIIMTPLLTKLLAGQLVPVDAAGLALSTFQVVLVPTIIGVL 270

Query:   257 XNTYAKPVVSFLRPVMPFVAMICTSLCIGSPLAINRSQILSIEGLQLVLPVLTFHAVAFA 316
              N +     S +  V P + +I T+L   SP+    + +L  +G QL+LPV   HA AFA
Sbjct:   271 ANEFFPKFTSKIITVTPLIGVILTTLLCASPIG-QVADVLKTQGAQLILPVALLHAAAFA 329

Query:   317 VGYWVSKIPSWRQGEEVSRTISLCTGMQSSTLAGLLATQ-FLGSSQAVPPACSVIAMAIM 375
             +GYW+SK  S+  GE  SRTIS+  GMQSS L  LLA + F     AVP A SV+ MA+ 
Sbjct:   330 IGYWISKF-SF--GESTSRTISIECGMQSSALGFLLAQKHFTNPLVAVPSAVSVVCMALG 386

Query:   376 GLCLASFW 383
             G  LA FW
Sbjct:   387 GSGLAVFW 394

GO:0005215 "transporter activity" evidence=ISS

GO:0006814 "sodium ion transport" evidence=ISS

GO:0008508 "bile acid:sodium symporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=ISS

GO:0035725 "sodium ion transmembrane transport" evidence=ISS

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0006849 "plasma membrane pyruvate transport" evidence=IDA

GO:0050833 "pyruvate transmembrane transporter activity" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

TAIR|locus:2132664 AT4G22840 "AT4G22840" [Arabidopsis thaliana (taxid:3702)]

 Score = 431 (156.8 bits), Expect = 1.6e-40, P = 1.6e-40
 Identities = 107/345 (31%), Positives = 167/345 (48%)

Query:    54 GRVGLQRREGNVSLLSFGINAGS----VVAR---YDSSQVLSAMLPFXXXXXXXXXXXQP 106
             G   L RR  + +    G++ G+    V+ +    D  +  +++LP             P
Sbjct:    57 GSRNLWRRYASDNFSEMGLDPGADPFKVIEKPSIVDRMKKANSILPHVVLASTILALIYP 116

Query:   107 STFTWVSKELYAPALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVLIA 166
              +FTW +   + PALG +M ++GI  + +DF  AFKRP  + +G+V QY++KP+LG +  
Sbjct:   117 PSFTWFTSRYFVPALGFLMFAVGINSNEKDFLEAFKRPKAILLGYVGQYLVKPVLGFIFG 176

Query:   167 KA----FGIPQIFYAGFVLTACVSGAQLSSYASFLSKGDXXXXXXXXXXXXXXXXXXXX- 221
              A    F +P    AG +L +CVSGAQLS+YA+FL+                        
Sbjct:   177 LAAVSLFQLPTPIGAGIMLVSCVSGAQLSNYATFLTDPALAPLSIVMTSLSTATAVLVTP 236

Query:   222 XXXXXXXXSVIPVDAVAMSKSIXXXXXXXXXXXXXXNTYAKPVVSFLRPVMPFVAMICTS 281
                       +PVD   M  SI              N     V + +RP +P ++++ T+
Sbjct:   237 MLSLLLIGKKLPVDVKGMISSILQVVIAPIAAGLLLNKLFPKVSNAIRPFLPILSVLDTA 296

Query:   282 LCIGSPLAINRSQILSIEGLQLVLPVLTFHAVAFAVGYWV--SKIPSWRQGEEVSRTISL 339
              C+G+PLA+N + ++S  G  ++L V  FH  AF  GY++  S   +    + + RT+S 
Sbjct:   297 CCVGAPLALNINSVMSPFGATILLLVTMFHLSAFLAGYFLTGSVFRNAPDAKAMQRTLSY 356

Query:   340 CTGMQSSTLAGLLATQFLGSSQA-VPPACSVIAMAIMGLCLASFW 383
              TGMQSS LA  LAT+F       +PPA S + M++MG  L   W
Sbjct:   357 ETGMQSSLLALALATKFFQDPLVGIPPAISTVVMSLMGFTLVLIW 401

GO:0005215 "transporter activity" evidence=ISS

GO:0006814 "sodium ion transport" evidence=IEA;ISS

GO:0008508 "bile acid:sodium symporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=ISS

GO:0035725 "sodium ion transmembrane transport" evidence=IEA;ISS

GO:0009941 "chloroplast envelope" evidence=IDA

TAIR|locus:2118021 BAT5 "AT4G12030" [Arabidopsis thaliana (taxid:3702)]

 Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
 Identities = 100/289 (34%), Positives = 141/289 (48%)

Query:   106 PSTFTWVSKELYAPALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILG--- 162
             P +FTW     + P LG +M ++GI  +  DF  A KRP  +  G++ QY+IKP+LG   
Sbjct:   117 PPSFTWFKPRYFVPGLGFMMFAVGINSNERDFLEALKRPDAIFAGYIGQYLIKPLLGYIF 176

Query:   163 -VLIAKAFGIPQIFYAGFVLTACVSGAQLSSYASFLSKGDXXXXXXXXXXXXXXXXXXXX 221
              V+    F +P    AG +L +CVSGAQLS+Y +FL+                       
Sbjct:   177 GVIAVSLFNLPTSIGAGIMLVSCVSGAQLSNYTTFLTDPSLAALSIVMTSISTATAVLVT 236

Query:   222 -XXXXXXXXSVIPVDAVAMSKSIXXXXXXXXXXXXXXNTYAKPVVSFLRPVMPFVAMICT 280
                        +PVD   M  SI              N     + + ++P +P + +I  
Sbjct:   237 PMLSLLLIGKKLPVDVFGMISSILQVVITPIAAGLLLNRLFPRLSNAIKPFLPALTVIDM 296

Query:   281 SLCIGSPLAINRSQILSIEGLQLVLPVLTFHAVAFAVGYWV-----SKIPSWRQGEEVSR 335
             S CIG+PLA+N   ILS  G  ++  V+TFH +AF  GY+      SK P  +    + R
Sbjct:   297 SCCIGAPLALNIDSILSPFGATILFLVITFHLLAFVAGYFFTGFFFSKAPDVKA---LQR 353

Query:   336 TISLCTGMQSSTLAGLLATQFLGSSQA-VPPACSVIAMAIMGLCLASFW 383
             TIS  TGMQSS LA  LAT+F       VPPA S + M++MG+ L + W
Sbjct:   354 TISYETGMQSSLLALALATKFFQDPLVGVPPAISTVVMSLMGVSLVTIW 402

GO:0005215 "transporter activity" evidence=ISS;IMP

GO:0006814 "sodium ion transport" evidence=IEA;ISS

GO:0008508 "bile acid:sodium symporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0035725 "sodium ion transmembrane transport" evidence=IEA;ISS

GO:0009536 "plastid" evidence=IDA

GO:0009611 "response to wounding" evidence=IEP;IDA

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA;IMP

TAIR|locus:2202935 AT1G78560 "AT1G78560" [Arabidopsis thaliana (taxid:3702)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 114/396 (28%), Positives = 168/396 (42%)

Query:     3 SLLN-LTPPKL-CIQK-RNTALH--SFRCNSI-LKPQK---SVKANGGLCTLACSTS--P 51
             SLLN  TP K   + K R T LH  +  C+ +   P     S+K    +  ++C  S   
Sbjct:     8 SLLNGATPLKSNSLHKSRLTPLHLRTISCSRLSYSPSSREISLKTQSTV-PISCRRSRFD 66

Query:    52 FVGRVGLQRRE-GNVSLLSFGINAGSVVARYDSSQVLSAMLPFXXXXXXXXXXXQPSTFT 110
             FV R G+   +       SFG     V       + +S   P            +PSTF 
Sbjct:    67 FVPRCGISSNDLPTEKKKSFGEWVEFV------GEAVSTAFPIWVSLGCLLGLMRPSTFN 120

Query:   111 WVSKELYAPALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVLIAKAFG 170
             WV+       L   ML +G+ L+++D   A   P  L  GF+ QY + P+    ++K   
Sbjct:   121 WVTPNWTIVGLTITMLGMGMTLTLDDLRGALSMPKELFAGFLLQYSVMPLSAFFVSKLLN 180

Query:   171 IPQIFYAGFVLTACVSGAQLSSYASFLSKGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXS 230
             +P  + AG +L  C  G   S+  +++++G+                             
Sbjct:   181 LPPHYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTAASTVSAVIMTPLLTAKLAKQ 240

Query:   231 VIPVDAVAMSKSIXXXXXXXXXXXXXXNTYAKPVVSFLRPVMPFVAMICTSLCIGSPLAI 290
              I VDA+ +  S               N Y K +V F+ PVMP +A+   ++  G  +  
Sbjct:   241 YITVDALGLLMSTLQVVLLPVLAGAFLNQYFKKLVKFVSPVMPPIAVGTVAILCGYAIGQ 300

Query:   291 NRSQILSIEGLQLVLPVLTFHAVAFAVGYWVSKIPSWRQGEEV--SRTISLCTGMQSSTL 348
             N S IL + G Q+VL     H   F  GY  S+I     G +V  SRTIS+  GMQ+S L
Sbjct:   301 NASAIL-MSGKQVVLASCLLHISGFLFGYLFSRI----LGIDVASSRTISIEVGMQNSVL 355

Query:   349 AGLLATQFLGSS-QAVPPACSVIAMAIMGLCLASFW 383
               +LATQ  G+   AVP A S +  +I+G  LA  W
Sbjct:   356 GVVLATQHFGNPLTAVPCAVSSVCHSILGSVLAGIW 391

GO:0005215 "transporter activity" evidence=ISS

GO:0006814 "sodium ion transport" evidence=IEA;ISS

GO:0008508 "bile acid:sodium symporter activity" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016020 "membrane" evidence=ISS

GO:0035725 "sodium ion transmembrane transport" evidence=IEA;ISS

GO:0009941 "chloroplast envelope" evidence=IDA

UNIPROTKB|Q8E8Y1 SO_4519 "Sodium-dependent transporter BASS family" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
 Identities = 75/310 (24%), Positives = 131/310 (42%)

Query:    87 LSAMLPFXXXXXXXXXXXQPSTFTWVSKELYAPALGGIMLSIGIRLSIEDFALAFKRPLP 146
             ++ + P             P+ F  V K    P L  IMLS+G+ L ++DFA AFK+   
Sbjct:     4 VNRLFPLFALLGAVTAYLMPAWFV-VFKNSIVPLLVVIMLSMGLTLDLQDFANAFKQKRA 62

Query:   147 LSVGFVAQYIIKPILGVLIAKAFGIPQIFYAGFVLTACVSGAQLSSYASFLSKGDXXXXX 206
             +  G + Q+ + P+  + I+   G+ +    G VL   V+G   S+   +L+KGD     
Sbjct:    63 VITGLILQFTLMPLSALAISLLLGLDRELTIGMVLVGSVAGGTASNVICYLAKGDVALSI 122

Query:   207 XXXXXXXXXXXXXXXXXXXXXXXSVIPVDAVAMSKSIXXXXXXXXXXXXXXNTYAKPVVS 266
                                     ++ +  + M  S+              N + KP V+
Sbjct:   123 TMTALSTLAGVVLTPLIIQLLIGEMVAIPLMDMLLSLVKIVLIPVTVGVVLNHFFKPQVA 182

Query:   267 FLRPVMPFVAMICTSLCIGSPLAINRSQILSIEGLQLVLPVLTFHAVAFAVGYWVSKIPS 326
              L P +P ++++   + I   +A+N  Q   + G  ++L V   + +   +GY   ++  
Sbjct:   183 KLSPALPLISIVAIVMAISIIVALNAGQFAQV-GPVILLAVFLHNGLGLTLGYLCCRLLG 241

Query:   327 WRQGEEVSRTISLCTGMQSSTLAGLLATQFLGSSQAVPPACSVIAMAIMGLCLASFWGSG 386
             +     V +TIS+  G+Q+S LA  L  +F     A+P A   I   + G  LA +W S 
Sbjct:   242 F--SHTVCKTISIEVGLQNSGLATALCIKFFSPISAIPSAIFSIWHNLSGAMLAGYWAS- 298

Query:   387 SRIRDLTNIL 396
              R++  T  L
Sbjct:   299 -RVQKQTEAL 307

GO:0006810 "transport" evidence=ISS

GO:0015370 "solute:sodium symporter activity" evidence=ISS

TIGR_CMR|SO_4519 SO_4519 "sodium-dependent transporter" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
 Identities = 75/310 (24%), Positives = 131/310 (42%)

Query:    87 LSAMLPFXXXXXXXXXXXQPSTFTWVSKELYAPALGGIMLSIGIRLSIEDFALAFKRPLP 146
             ++ + P             P+ F  V K    P L  IMLS+G+ L ++DFA AFK+   
Sbjct:     4 VNRLFPLFALLGAVTAYLMPAWFV-VFKNSIVPLLVVIMLSMGLTLDLQDFANAFKQKRA 62

Query:   147 LSVGFVAQYIIKPILGVLIAKAFGIPQIFYAGFVLTACVSGAQLSSYASFLSKGDXXXXX 206
             +  G + Q+ + P+  + I+   G+ +    G VL   V+G   S+   +L+KGD     
Sbjct:    63 VITGLILQFTLMPLSALAISLLLGLDRELTIGMVLVGSVAGGTASNVICYLAKGDVALSI 122

Query:   207 XXXXXXXXXXXXXXXXXXXXXXXSVIPVDAVAMSKSIXXXXXXXXXXXXXXNTYAKPVVS 266
                                     ++ +  + M  S+              N + KP V+
Sbjct:   123 TMTALSTLAGVVLTPLIIQLLIGEMVAIPLMDMLLSLVKIVLIPVTVGVVLNHFFKPQVA 182

Query:   267 FLRPVMPFVAMICTSLCIGSPLAINRSQILSIEGLQLVLPVLTFHAVAFAVGYWVSKIPS 326
              L P +P ++++   + I   +A+N  Q   + G  ++L V   + +   +GY   ++  
Sbjct:   183 KLSPALPLISIVAIVMAISIIVALNAGQFAQV-GPVILLAVFLHNGLGLTLGYLCCRLLG 241

Query:   327 WRQGEEVSRTISLCTGMQSSTLAGLLATQFLGSSQAVPPACSVIAMAIMGLCLASFWGSG 386
             +     V +TIS+  G+Q+S LA  L  +F     A+P A   I   + G  LA +W S 
Sbjct:   242 F--SHTVCKTISIEVGLQNSGLATALCIKFFSPISAIPSAIFSIWHNLSGAMLAGYWAS- 298

Query:   387 SRIRDLTNIL 396
              R++  T  L
Sbjct:   299 -RVQKQTEAL 307

GO:0006810 "transport" evidence=ISS

GO:0015370 "solute:sodium symporter activity" evidence=ISS

TIGR_CMR|BA_3574 BA_3574 "bile acid transporter family protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
 Identities = 69/268 (25%), Positives = 119/268 (44%)

Query:   121 LGGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVLIAKAFGIPQIFYAGFV 180
             LG +M  +G+ L   DF +   +PLP+ +G  AQ+II P++  ++A    +P    AG V
Sbjct:    44 LGVVMFGMGLTLKAVDFKIIATKPLPVIIGVCAQFIIMPLVAYVLAYVMNLPAELAAGLV 103

Query:   181 LTACVSGAQLSSYASFLSKGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVIPVDAVAMS 240
             L   V G   S+   +L+KG+                              +PV+ ++M 
Sbjct:   104 LLGSVPGGTASNVMVYLAKGNLALSIAMTSLSTLLAPIATPLILLLLAGQWMPVNPMSMF 163

Query:   241 KSIXXXXXXXXXXXXXXNTYAKPVVSFLRPVMPFVAMICTSLCIGSPLAINRSQILSIEG 300
              SI                +    V+    V+PF++++   + + + ++ N S I S  G
Sbjct:   164 LSIVQVIIIPIILGLVVKKFFPKTVTKGMTVIPFISVLAIIIIVSAVVSANVSSITS-SG 222

Query:   301 LQLVLPVLTFHAVAFAVGYWVSKIPSWRQGEEVSRTISLCTGMQSSTLAGLLATQFLGSS 360
             L +++ V+  +A  F +GY  + I    +G    R IS+  GMQ+S L   LAT   G +
Sbjct:   223 LLILIAVMLHNAFGFLLGYITAFILKLDEGTR--RAISIEVGMQNSGLGVALATAHFGPA 280

Query:   361 QAVPPACSVIAMAIMGLCLASFWGSGSR 388
              A+P   + +   I G  LA+ W   ++
Sbjct:   281 AALPSVLAAVWHNIAGPILATIWSKNAK 308

GO:0006810 "transport" evidence=ISS

GO:0008508 "bile acid:sodium symporter activity" evidence=ISS

MGI|MGI:2685251 Slc10a5 "solute carrier family 10 (sodium/bile acid cotransporter family), member 5" [Mus musculus (taxid:10090)]

 Score = 114 (45.2 bits), Expect = 8.3e-06, Sum P(2) = 8.3e-06
 Identities = 26/93 (27%), Positives = 46/93 (49%)

Query:   112 VSKELYAPALGGIMLS---IGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVLIAKA 168
             V   ++   L  I+L+    G ++  +     +KRPLP+ +G V Q+ + P  G L+++ 
Sbjct:   137 VDSSIFLLVLSMILLNKCAFGCKIEFQVLQTVWKRPLPILLGVVIQFFLMPFCGFLLSQI 196

Query:   169 FGIPQIFYAGFVLTACVSGAQLSSYASFLSKGD 201
              G+P+    GFV+T    G       + L +GD
Sbjct:   197 LGLPKAQAFGFVMTCTCPGGGGGYLFALLLEGD 229

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006814 "sodium ion transport" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008508 "bile acid:sodium symporter activity" evidence=IEA

GO:0015293 "symporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

RGD|1306036 Slc10a5 "solute carrier family 10 (sodium/bile acid cotransporter family), member 5" [Rattus norvegicus (taxid:10116)]

 Score = 105 (42.0 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
 Identities = 21/75 (28%), Positives = 39/75 (52%)

Query:   127 SIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVLIAKAFGIPQIFYAGFVLTACVS 186
             + G ++ ++     +KRPLP+ +G V Q+ + P  G L+++  G+ +    GFV+T    
Sbjct:   155 AFGCKIELQVLQTVWKRPLPILLGAVTQFFLMPFCGFLLSQILGLSKAQAFGFVMTCTCP 214

Query:   187 GAQLSSYASFLSKGD 201
             G       + L +GD
Sbjct:   215 GGGGGYLFALLLEGD 229

GO:0008508 "bile acid:sodium symporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8RXE8	BASS3_ARATH	No assigned EC number	0.7694	0.8817	0.8306	yes	no
Q6K739	BASS3_ORYSJ	No assigned EC number	0.7272	0.8571	0.8226	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	406
COG0385	319	COG0385, COG0385, Predicted Na+-dependent transpor	1e-50
TIGR00841	286	TIGR00841, bass, bile acid transporter	9e-44
pfam01758	188	pfam01758, SBF, Sodium Bile acid symporter family	2e-27
pfam13593	313	pfam13593, DUF4137, SBF-like CPA transporter famil	1e-07
COG0798	342	COG0798, ACR3, Arsenite efflux pump ACR3 and relat	6e-04

>gnl|CDD|223462 COG0385, COG0385, Predicted Na+-dependent transporter [General function prediction only]

 Score =  172 bits (439), Expect = 1e-50
 Identities = 91/303 (30%), Positives = 147/303 (48%), Gaps = 5/303 (1%)

Query: 83  SSQVLSAMLPFVVALTAVAALAQPSTFTWVSKELYAPALGGIMLSIGIRLSIEDFALAFK 142
            S+    +    V L A  A   P TF W+   +   AL  IM  +G+ LS EDF    K
Sbjct: 7   LSRDPFKIFLLWVVLLAAIAPIFPETFGWLGSAIP-IALALIMFGMGLTLSREDFLAGLK 65

Query: 143 RPLPLSVGFVAQYIIKPILGVLIAKAFGIPQIFYAGFVLTACVSGAQLSSYASFLSKGDV 202
            P  + +G  AQ+++ P+L +L+AK F +P     G +L  C  G   S+  ++L+KG+V
Sbjct: 66  HPRLVLIGLAAQFVLMPLLALLLAKLFPLPPELAVGLLLLGCCPGGVASNAMTYLAKGNV 125

Query: 203 AVSILLSSSTTIASVLITPLLTGLLIGSVIPVDAVAMSKSILQVVLVPVALGLGLNTYAK 262
           A+S+  +S +T+    +TPLL GLL G  +PVD   M  SIL  VL+P  LG  L     
Sbjct: 126 ALSVCSTSVSTLLGPFLTPLLVGLLAGGGVPVDVGGMFLSILLQVLLPFVLGQLLRPLLP 185

Query: 263 PVVSFLRPVMPFVAMICTSLCIGSPLAINRSQILSIEGLQLVLPVLTFHAVAFAVGYWVS 322
             V  L+  +P V+++   L + +  +      +   GL + + V+  + +   +GY+ +
Sbjct: 186 KWVERLKKALPPVSVLSILLIVYAAFSAAVENGIWS-GLLIFVAVILHNLLGLLLGYFGA 244

Query: 323 KIPSWRQGEEVSRTISLCTGMQSSTLAGLLATQFLGSSQ-AVPPACSVIAMAIMGLCLAS 381
           +       +    TI++  GMQ+  L   LA  F G+   A+P A   +   + G  LA 
Sbjct: 245 R--LLGFDKADEITIAIEGGMQNLGLGAALAAAFFGNPLMALPLAIFSVWQNMSGAVLAG 302

Query: 382 FWG 384
            + 
Sbjct: 303 LYA 305

Length = 319

>gnl|CDD|188087 TIGR00841, bass, bile acid transporter

 Score =  153 bits (389), Expect = 9e-44
 Identities = 78/280 (27%), Positives = 134/280 (47%), Gaps = 8/280 (2%)

Query: 107 STFTWVSKELYAPALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVLIA 166
              T +S  L    L  IM S+G  L  EDF    ++P  + +G +AQY I P+ G L+A
Sbjct: 1   ILSTNLSTILL-ILLFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTGFLLA 59

Query: 167 KAFGIPQIFYAGFVLTACVSGAQLSSYASFLSKGDVAVSILLSSSTTIASVLITPLLTGL 226
           K F +P     G ++  C  G   S+  ++L KGD+A+SI +++ +T+ ++ + PLL  +
Sbjct: 60  KVFKLPPELAVGVLIVGCCPGGTASNVFTYLLKGDMALSISMTTCSTLLALGMMPLLLYI 119

Query: 227 LIGSVIPVDAVAMSKSI---LQVVLVPVALGLGLNTYAKPVVSFLRPVMPFVAMICTSLC 283
                +    V     I   L +VL+PV++G+ +  +  P ++ +   +  +++   S+ 
Sbjct: 120 YAKMWVDGTLVVPYLGIGLSLVIVLIPVSIGMLVK-HKLPQIAKIILKVGLISVFLLSVI 178

Query: 284 IGSPLAINRSQILSIEGLQLVLPVLTFHAVAFAVGYWVSKIPSWRQGEEVSRTISLCTGM 343
           I     IN  + L+  G  L+L  +      F +GY ++K+          RTIS+  GM
Sbjct: 179 IAVVGGINV-ENLATIGPLLLLVGILLPLAGFLLGYLLAKL--AGLPWARCRTISIEVGM 235

Query: 344 QSSTLAGLLATQFLGSSQAVPPACSVIAMAIMGLCLASFW 383
           Q+S L   +A        AVP A   +  A+  L  A  +
Sbjct: 236 QNSQLCSTIAQLSFSPEVAVPSAIFPLIYALFQLAFALLF 275

The Bile Acid:Na+ Symporter (BASS) Family (TC 2.A.28) Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 286

>gnl|CDD|216683 pfam01758, SBF, Sodium Bile acid symporter family

 Score =  106 bits (268), Expect = 2e-27
 Identities = 53/188 (28%), Positives = 101/188 (53%), Gaps = 7/188 (3%)

Query: 118 APALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVLIA-KAFGIPQIFY 176
              L  +M S+G+++  EDF   F+RP  L +G + Q++I P+L  ++A     +P    
Sbjct: 1   PLGLFLMMFSMGLKVRYEDFKELFRRPKALLLGLLLQWVIMPLLMFILAWFLLRLPPELA 60

Query: 177 AGFVLTACVSGAQLSSYASFLSKGDVAVSILLSSSTTIASVLITPLLTGLLIGSVIPVDA 236
            G +L  C  G  +S+  ++L+KGDV +S+++ + +T+ + L+TPLL+ LL G ++ V  
Sbjct: 61  VGLILVGCAPGGAMSNVWTYLAKGDVELSVVMVALSTLTAPLVTPLLSFLLSGLLLDVGT 120

Query: 237 VA----MSKSILQVVLVPVALGLGLNTY--AKPVVSFLRPVMPFVAMICTSLCIGSPLAI 290
                 + KS+L  V++P+  G+    +   +     + PV+P +++I   L I    ++
Sbjct: 121 AVSPLSLIKSVLIYVIIPLIAGILTRYFLPREWFEQRILPVLPPISLIGLLLTIVVIFSL 180

Query: 291 NRSQILSI 298
               I S+
Sbjct: 181 KGEVIASL 188

This family consists of Na+/bile acid co-transporters. These transmembrane proteins function in the liver in the uptake of bile acids from portal blood plasma a process mediated by the co-transport of Na+. Also in the family is ARC3 from S. cerevisiae, this is a putative transmembrane protein involved in resistance to arsenic compounds. Length = 188

>gnl|CDD|222249 pfam13593, DUF4137, SBF-like CPA transporter family (DUF4137)

 Score = 52.5 bits (127), Expect = 1e-07
 Identities = 37/134 (27%), Positives = 66/134 (49%), Gaps = 6/134 (4%)

Query: 129 GIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVLIAKAFG--IPQIFYAGFVLTACVS 186
           G++LS E+     +         +  +++ P+LG+ ++      +P     GF+  A + 
Sbjct: 45  GLKLSTEELLAGLRNWRLHLFVQLFTFVLFPLLGLGLSPLLPAALPPELLLGFLFLAALP 104

Query: 187 GAQLSSYASFLS--KGDVAVSILLSSSTTIASVLITPLLTGLLIGSV-IPVDAVAMSKSI 243
              +SS  +  S   G+VA ++  +S + +  V +TPLL GLL+G     VD  A+ K +
Sbjct: 105 -TTVSSSVAMTSQAGGNVAAAVCSASISNLLGVFLTPLLVGLLLGGGGGGVDLGAVLKKL 163

Query: 244 LQVVLVPVALGLGL 257
           L  +L+P  LG  L
Sbjct: 164 LLQLLLPFVLGQLL 177

These family members are membrane transporter proteins of the CPA and AT superfamily. Length = 313

>gnl|CDD|223869 COG0798, ACR3, Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]

 Score = 41.1 bits (97), Expect = 6e-04
 Identities = 59/301 (19%), Positives = 116/301 (38%), Gaps = 34/301 (11%)

Query: 90  MLPFVVALTAVAALA----QPSTFTWVSKE-------LYAPALGGIMLSIGIRLSIEDFA 138
            L   V L     +      P     + K          A  L  +M    +++  E+  
Sbjct: 15  YLTLWVFLAIAIGILLGVHFPGLAQLLGKLEFGGVSIPIAIGLILMMYPPMLKIDFEELK 74

Query: 139 LAFKRPLPLSVGFVAQYIIKPILGVLIAKAF--GIPQIFYAGFVLTACVSGAQLSSYASF 196
             FK P PL +     +II P+L   +A  F    P+ + AG +L        +    S 
Sbjct: 75  NVFKDPKPLILSLFVNWIIGPLLMFALAWFFLPDEPE-YRAGLILLGLAPCIAMVIVWSG 133

Query: 197 LSKGDVAVSILLSSSTTIASVLITPLLTGLLIGSV-IPVDAVAMSKSILQVVLVPVALG- 254
           L+KGD  ++++L +  ++  +++   L    +G + I V    ++KS+L  + +P+  G 
Sbjct: 134 LAKGDRELTLVLVAFNSLLQIVLYAPLGKFFLGVISISVPFWTIAKSVLLYLGIPLIAGV 193

Query: 255 ---------LGLNTYAKPVVSFLRPVMPFVAMICTSLCIGSPLAINRSQILSIEG--LQL 303
                     G   Y    +  + P+   + ++ T + I    A    QI+      L +
Sbjct: 194 LTRYILIKKKGREWYESRFLPKISPIAL-IGLLLTIVLI---FAFQGEQIVEQPLDILLI 249

Query: 304 VLPVLTFHAVAFAVGYWVSKIPSWRQGEEVSRTISLCTGMQSSTLA-GLLATQFLGSSQA 362
            +P+L +  + F + Y+++K  +     E +  +       +  LA  +    F  +S A
Sbjct: 250 AIPLLIYFLLMFFISYFIAK--ALGLPYEDAAALVFTGASNNFELAIAVAIALFGLTSGA 307

Query: 363 V 363
            
Sbjct: 308 A 308

Length = 342

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	406
COG0385	319	Predicted Na+-dependent transporter [General funct	100.0
TIGR00841	286	bass bile acid transporter. Functionally character	100.0
TIGR00832	328	acr3 arsenical-resistance protein. The first prote	100.0
PF13593	313	DUF4137: SBF-like CPA transporter family (DUF4137)	100.0
COG0798	342	ACR3 Arsenite efflux pump ACR3 and related permeas	100.0
PF01758	187	SBF: Sodium Bile acid symporter family; InterPro:	99.96
KOG2718	371	consensus Na+-bile acid cotransporter [Inorganic i	99.94
TIGR00946	321	2a69 he Auxin Efflux Carrier (AEC) Family.	99.64
PRK09903	314	putative transporter YfdV; Provisional	99.56
COG0679	311	Predicted permeases [General function prediction o	99.49
PF03547	385	Mem_trans: Membrane transport protein; InterPro: I	99.0
KOG4821	287	consensus Predicted Na+-dependent cotransporter [G	98.83
PRK12460	312	2-keto-3-deoxygluconate permease; Provisional	98.81
KOG2718	371	consensus Na+-bile acid cotransporter [Inorganic i	98.19
PF03812	314	KdgT: 2-keto-3-deoxygluconate permease; InterPro:	98.18
TIGR00793	314	kdgT 2-keto-3-deoxygluconate transporter. This fam	98.05
PRK05274	326	2-keto-3-deoxygluconate permease; Provisional	97.86
PF05145	318	AmoA: Putative ammonia monooxygenase; InterPro: IP	97.77
COG3180	352	AbrB Putative ammonia monooxygenase [General funct	97.7
PRK03562	621	glutathione-regulated potassium-efflux system prot	97.1
PRK03659	601	glutathione-regulated potassium-efflux system prot	96.9
PRK10669	558	putative cation:proton antiport protein; Provision	96.73
PF03547	385	Mem_trans: Membrane transport protein; InterPro: I	96.68
COG0475	397	KefB Kef-type K+ transport systems, membrane compo	96.59
TIGR03082	156	Gneg_AbrB_dup membrane protein AbrB duplication. T	96.58
PF03601	305	Cons_hypoth698: Conserved hypothetical protein 698	96.23
PRK12460	312	2-keto-3-deoxygluconate permease; Provisional	95.79
PLN03159	832	cation/H(+) antiporter 15; Provisional	95.52
PF04172	215	LrgB: LrgB-like family ; InterPro: IPR007300 The t	95.37
TIGR00659	226	conserved hypothetical protein TIGR00659. Members	95.32
PRK05326	562	potassium/proton antiporter; Reviewed	95.26
TIGR00932	273	2a37 transporter, monovalent cation:proton antipor	94.74
PRK04288	232	antiholin-like protein LrgB; Provisional	94.74
PF05145	318	AmoA: Putative ammonia monooxygenase; InterPro: IP	94.6
TIGR00946	321	2a69 he Auxin Efflux Carrier (AEC) Family.	94.54
PRK10711	231	hypothetical protein; Provisional	94.41
TIGR00698	335	conserved hypothetical integral membrane protein.	93.28
PF03977	360	OAD_beta: Na+-transporting oxaloacetate decarboxyl	93.17
TIGR00844	810	c_cpa1 na(+)/h(+) antiporter. This model is specif	92.89
COG2855	334	Predicted membrane protein [Function unknown]	92.82
COG4651	408	RosB Kef-type K+ transport system, predicted NAD-b	92.81
TIGR03136	399	malonate_biotin Na+-transporting malonate decarbox	91.81
COG1346	230	LrgB Putative effector of murein hydrolase [Cell e	91.1
TIGR00793	314	kdgT 2-keto-3-deoxygluconate transporter. This fam	90.37
PF03601	305	Cons_hypoth698: Conserved hypothetical protein 698	89.99
COG3180	352	AbrB Putative ammonia monooxygenase [General funct	88.9
PF03616	368	Glt_symporter: Sodium/glutamate symporter; InterPr	87.1
TIGR01109	354	Na_pump_decarbB sodium ion-translocating decarboxy	85.99
PRK03562	621	glutathione-regulated potassium-efflux system prot	85.71
PRK15086	372	ethanolamine utilization protein EutH; Provisional	85.44
PF03956	191	DUF340: Membrane protein of unknown function (DUF3	85.41
PRK15477	433	oxaloacetate decarboxylase subunit beta; Provision	84.57
PRK15476	433	oxaloacetate decarboxylase subunit beta; Provision	84.52
PRK15475	433	oxaloacetate decarboxylase subunit beta; Provision	83.91
PF03812	314	KdgT: 2-keto-3-deoxygluconate permease; InterPro:	82.81
PRK03659	601	glutathione-regulated potassium-efflux system prot	81.51
KOG2722	408	consensus Predicted membrane protein [Function unk	80.62
PF05684	378	DUF819: Protein of unknown function (DUF819); Inte	80.56
TIGR00831	525	a_cpa1 Na+/H+ antiporter, bacterial form. This mod	80.26

>COG0385 Predicted Na+-dependent transporter [General function prediction only]

Probab=100.00  E-value=3.6e-52  Score=404.52  Aligned_cols=302  Identities=30%  Similarity=0.457  Sum_probs=286.8

Q ss_pred             HHHHHhHHHHHHHHHHHHHhhccchhhHhhhhhHHHHHHHHHHHhcccCCHHHHHHHhcCchhHHHHHHHHHHHHHHHHH
Q 037575           84 SQVLSAMLPFVVALTAVAALAQPSTFTWVSKELYAPALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGV  163 (406)
Q Consensus        84 ~~~l~~~~~~~~~~~~~lgl~~P~~~~~l~~~~~~~~l~~iMf~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~~l~Plla~  163 (406)
                      .++..+.+++|+++.+.++...|+.+.++ +.++...+..+||.+|++++.+|+++..+||+.++.++.+||++||++++
T Consensus         8 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~~-~~~~~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~   86 (319)
T COG0385           8 SRDPFKIFLLWVVLLAAIAPIFPETFGWL-GSAIPIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLAL   86 (319)
T ss_pred             hHhHHHHHHHHHHHHHHHHHhccccchhh-hHHHHHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHH
Confidence            35566778999999999999999999999 46788999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCChHHHHHHHHHhcCchhhHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccChHHHHHHH
Q 037575          164 LIAKAFGIPQIFYAGFVLTACVSGAQLSSYASFLSKGDVAVSILLSSSTTIASVLITPLLTGLLIGSVIPVDAVAMSKSI  243 (406)
Q Consensus       164 ~l~~~~~l~~~~~~GlvL~a~~P~~~~s~v~t~~~gGd~ala~~~~~~stlls~~~~Pl~l~ll~g~~v~vd~~~l~~~l  243 (406)
                      ++++.+++||+++.|+++++|||+|+.|+++|+++|||++++++++.+||+++++++|+++.++.|+.+++|.+++++++
T Consensus        87 ~~~~~~~l~~~l~~Gl~ll~~~Pggv~S~~~t~lAkGnValsV~~tsvStll~~f~tPllv~l~~~~~v~~~~~~m~~~i  166 (319)
T COG0385          87 LLAKLFPLPPELAVGLLLLGCCPGGVASNAMTYLAKGNVALSVCSTSVSTLLGPFLTPLLVGLLAGGGVPVDVGGMFLSI  166 (319)
T ss_pred             HHHHHcCCCHHHHHhHHheeeCCCchhHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhHhHHHhHhcccchHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 037575          244 LQVVLVPVALGLGLNTYAKPVVSFLRPVMPFVAMICTSLCIGSPLAINRSQILSIEGLQLVLPVLTFHAVAFAVGYWVSK  323 (406)
Q Consensus       244 l~~vllPl~lG~llr~~~p~~~~~i~~~l~~is~l~lllii~~~~~~n~~~i~~~~~~~i~~~~lll~~~~f~lG~~l~r  323 (406)
                      ++++++|..+|+++|++.|++.++.++.++.++..+++++++..++.+.++..+. ...+.+.+.+++.++|..||+.+|
T Consensus       167 ~~~vllP~~LG~~~r~~~~~~~~~~~~~l~~vs~~~illIv~~~~s~~~~~~~~~-~~~v~~~v~~~n~lg~~~gy~~ar  245 (319)
T COG0385         167 LLQVLLPFVLGQLLRPLLPKWVERLKKALPPVSVLSILLIVYAAFSAAVENGIWS-GLLIFVAVILHNLLGLLLGYFGAR  245 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999998888775 456777788888999999999999


Q ss_pred             ccCCCCCccceeeeeeecccccHHHHHHHHHHhcC-CcccHHHHHHHHHHHHHHHHHHHHHhcCccc
Q 037575          324 IPSWRQGEEVSRTISLCTGMQSSTLAGLLATQFLG-SSQAVPPACSVIAMAIMGLCLASFWGSGSRI  389 (406)
Q Consensus       324 ~~~~~~~~~~~~a~~~~~g~rN~~Lai~lA~~~f~-~~~alp~~~y~v~q~i~~~~la~~~~~~~~~  389 (406)
                      +  +|+|++|++|+++|+|+||.++|+.+|..||+ |..++|.++|++||++.+++++++|+||+.+
T Consensus       246 ~--~g~~~a~~iti~ie~g~qn~~lg~alA~~f~~~~~~alP~aif~~~q~~~~a~la~~~~~~~~~  310 (319)
T COG0385         246 L--LGFDKADEITIAIEGGMQNLGLGAALAAAFFGNPLMALPLAIFSVWQNMSGAVLAGLYARRILK  310 (319)
T ss_pred             H--hCCChhheeeEEEeeccccHHHHHHHHHhcCCCchhHhHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            9  89999999999999999999999999999999 8899999999999999999999999998643

>TIGR00841 bass bile acid transporter

Probab=100.00  E-value=1e-43  Score=347.28  Aligned_cols=272  Identities=27%  Similarity=0.401  Sum_probs=252.7

Q ss_pred             hhhHHHHHHHHHHHhcccCCHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhcCchhhHHHH
Q 037575          114 KELYAPALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVLIAKAFGIPQIFYAGFVLTACVSGAQLSSY  193 (406)
Q Consensus       114 ~~~~~~~l~~iMf~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~~l~Plla~~l~~~~~l~~~~~~GlvL~a~~P~~~~s~v  193 (406)
                      +.+..+.++.+||.+|++++.+|+++..|||+.+..+++.|++++|++++++++.++++++++.|+++++|||+++.+++
T Consensus         7 ~~~~~~~l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla~~l~~~~~l~~~~~~glvL~~~~P~~~~s~v   86 (286)
T TIGR00841         7 STILLILLFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTGFLLAKVFKLPPELAVGVLIVGCCPGGTASNV   86 (286)
T ss_pred             HHHHHHHHHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHheeeCCCchHHHH
Confidence            35566779999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhCCccc----cChHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHhHh
Q 037575          194 ASFLSKGDVAVSILLSSSTTIASVLITPLLTGLLIGSVIP----VDAVAMSKSILQVVLVPVALGLGLNTYAKPVVSFLR  269 (406)
Q Consensus       194 ~t~~~gGd~ala~~~~~~stlls~~~~Pl~l~ll~g~~v~----vd~~~l~~~ll~~vllPl~lG~llr~~~p~~~~~i~  269 (406)
                      |++++|||.++++.+++++|+++++++|+++.++.+...+    +|..+++++ +.++++|+++|+++|++.|++.++.+
T Consensus        87 ~t~~~~gn~~la~~~~~~stlls~vt~Pl~l~~~~~~~~~~~~~v~~~~i~~~-~~~v~vPl~lG~~~r~~~p~~~~~~~  165 (286)
T TIGR00841        87 FTYLLKGDMALSISMTTCSTLLALGMMPLLLYIYAKMWVDGTLVVPYLGIGLS-LVAVLIPVSIGMLVKHKLPQIAKIIL  165 (286)
T ss_pred             HHHHhCCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceecHHHHHHH-HHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            9999999999999999999999999999999999875444    999999999 99999999999999999999888888


Q ss_pred             cccchHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccceeeeeeecccccHHHH
Q 037575          270 PVMPFVAMICTSLCIGSPLAINRSQILSIEGLQLVLPVLTFHAVAFAVGYWVSKIPSWRQGEEVSRTISLCTGMQSSTLA  349 (406)
Q Consensus       270 ~~l~~is~l~lllii~~~~~~n~~~i~~~~~~~i~~~~lll~~~~f~lG~~l~r~~~~~~~~~~~~a~~~~~g~rN~~La  349 (406)
                      + .+.++.+.+.+++...++.|.+.+.+. .+.+.+++++++.++|.+||+++|.  +|.++++++++++|+|+||.++|
T Consensus       166 ~-~~~~s~~~l~liv~~~~~~~~~~i~~~-~~~~~~~~~ll~~~~~~~g~~~a~~--~~l~~~~~~t~~~~~g~qN~~la  241 (286)
T TIGR00841       166 K-VGLISVFLLSVIIAVVGGINVENLATI-GPLLLLVGILLPLAGFLLGYLLAKL--AGLPWARCRTISIEVGMQNSQLC  241 (286)
T ss_pred             h-CchHHHHHHHHHHHHHHHhhHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHH--hCCCHhhheeeeeeeecccHHHH
Confidence            8 899999988888877778888877664 5678888999999999999999998  88899999999999999999999


Q ss_pred             HHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHhcCcccc
Q 037575          350 GLLATQFLGSSQAVPPACSVIAMAIMGLCLASFWGSGSRIR  390 (406)
Q Consensus       350 i~lA~~~f~~~~alp~~~y~v~q~i~~~~la~~~~~~~~~~  390 (406)
                      +++|.++|+|+.++|+++|.++|+++++.++.+|+|+.++.
T Consensus       242 l~la~~~f~~~~a~~~~~~~v~~~~~~~~~a~~~~~~~~~~  282 (286)
T TIGR00841       242 STIAQLSFSPEVAVPSAIFPLIYALFQLAFALLFLIIHFCY  282 (286)
T ss_pred             HHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999876653

Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.

>TIGR00832 acr3 arsenical-resistance protein

Probab=100.00  E-value=3.1e-42  Score=342.31  Aligned_cols=283  Identities=19%  Similarity=0.231  Sum_probs=241.8

Q ss_pred             HHHHhHHHHHHHHHHHHHhhccchhhHhhhh----h---HHHHHHHHHHHhcccCCHHHHHHHhcCchhHHHHHHHHHHH
Q 037575           85 QVLSAMLPFVVALTAVAALAQPSTFTWVSKE----L---YAPALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYII  157 (406)
Q Consensus        85 ~~l~~~~~~~~~~~~~lgl~~P~~~~~l~~~----~---~~~~l~~iMf~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~~l  157 (406)
                      +++..+....++.+.++|+..|+.+++....    .   ....++.+||.+|++++++|+++.+||||.+..+++.|+++
T Consensus         6 ~~~~~~~~~~~i~~~~~g~~~P~~~~~~~~~~~~~~~~~~~~~l~~mmf~mgl~L~~~df~~~~~~pk~~~~~~~~qfvi   85 (328)
T TIGR00832         6 RYLTLWIFLAIAAGVGLGVLFPSVFQALAALEVATVSIPIAIGLILMMYPPLAKVDYSALGDVFKDPKGLILSLFINWII   85 (328)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcCCHHHHHHHHcCchHHHHHHHHHHHH
Confidence            3334444444455668899999998877321    1   12345678999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHc-CCChHHHHHHHHHhcCchhhHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhC-------
Q 037575          158 KPILGVLIAKAF-GIPQIFYAGFVLTACVSGAQLSSYASFLSKGDVAVSILLSSSTTIASVLITPLLTGLLIG-------  229 (406)
Q Consensus       158 ~Plla~~l~~~~-~l~~~~~~GlvL~a~~P~~~~s~v~t~~~gGd~ala~~~~~~stlls~~~~Pl~l~ll~g-------  229 (406)
                      +|+++|++++.+ +++|+++.|+++++||||+++|++||+++|||+++++.+|.++|+++++++|++++++.|       
T Consensus        86 ~Plla~~l~~l~~~~~p~l~~GliLv~~~Pgg~~S~v~T~lAkGnvalsv~lt~~stLl~~~~~P~l~~ll~~~~~~~~~  165 (328)
T TIGR00832        86 GPFLMFLLAWLFLRDLFEYIAGLILLGLARCIAMVFVWNQLAKGDPEYTLVLVAVNSLFQVFLYAPLAWLLLGVSPIWLG  165 (328)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHhcchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccc
Confidence            999999999975 999999999999999999999999999999999999999999999999999999998887       


Q ss_pred             -CccccChHHHHHHHHHHHHHHHHHHHHHHhhhHhH-----HH-hHhcccchHHHHHHHHHHHHHHHhhhhHHhhhhh--
Q 037575          230 -SVIPVDAVAMSKSILQVVLVPVALGLGLNTYAKPV-----VS-FLRPVMPFVAMICTSLCIGSPLAINRSQILSIEG--  300 (406)
Q Consensus       230 -~~v~vd~~~l~~~ll~~vllPl~lG~llr~~~p~~-----~~-~i~~~l~~is~l~lllii~~~~~~n~~~i~~~~~--  300 (406)
                       +.+++|..+++++++.++++|+++|+.+|++.|++     .+ +.++.++..+.+++++++...++.|++.+.+...  
T Consensus       166 ~~~v~v~~~~~~~~l~~~v~lPlvlG~~lr~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~iv~~~~~~~~~~i~~~~~~i  245 (328)
T TIGR00832       166 LTVITVPWETIAKSVLIYLGIPLIAGILTRYWLLKRKGREWYEKVFLPKISPWSLIALLFTIVLLFAFQGETIIELPLDI  245 (328)
T ss_pred             cceeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhChHHH
Confidence             35789999999999999999999999999999953     33 7778888888888888888888889888876422  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccCCCCCccceeeeeeecccccHHHHHHHHHHhcCC-cccHHHHHHH
Q 037575          301 LQLVLPVLTFHAVAFAVGYWVSKIPSWRQGEEVSRTISLCTGMQSSTLAGLLATQFLGS-SQAVPPACSV  369 (406)
Q Consensus       301 ~~i~~~~lll~~~~f~lG~~l~r~~~~~~~~~~~~a~~~~~g~rN~~Lai~lA~~~f~~-~~alp~~~y~  369 (406)
                      ..+..++++++.++|.+||+++|.  +|.+++|++|+++|+|+||.++|+.+|.++|++ +.+.++++|.
T Consensus       246 ~~~~~~v~l~~~~~~~lg~~~~r~--~~l~~~~~~a~~~e~g~qN~~lai~lA~~~f~~~~~~a~~~~~~  313 (328)
T TIGR00832       246 ALIAIPLLIYFYIMFFLTFALAKK--LGLPYSITAPAAFTGASNNFELAIAVAISLFGLNSGAALATVVG  313 (328)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH--hCcChhhhhhheehhhhhhHHHHHHHHHHhCCCCcccHHHHHhh
Confidence            234456778999999999999999  889999999999999999999999999999986 3444444443

The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.

>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)

Probab=100.00  E-value=1.6e-38  Score=313.83  Aligned_cols=295  Identities=19%  Similarity=0.255  Sum_probs=262.1

Q ss_pred             hHHHHHHHHHHHHHhhccchhhH---hh-hhhHHHHHHHHHHHhcccCCHHHHHHHhcCchhHHHHHHHHHHHHHHHHHH
Q 037575           89 AMLPFVVALTAVAALAQPSTFTW---VS-KELYAPALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVL  164 (406)
Q Consensus        89 ~~~~~~~~~~~~lgl~~P~~~~~---l~-~~~~~~~l~~iMf~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~~l~Plla~~  164 (406)
                      +|+++.+.+++++|+..|..+..   .. +....+.++.++|..|++++.+|+++..||+|.++.+...+++++|+++++
T Consensus         1 ~~fl~~l~~ai~la~~~P~~g~~~~~~~~~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~~   80 (313)
T PF13593_consen    1 QWFLLGLLLAILLAYLFPAPGAAGGVIKPEYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGFG   80 (313)
T ss_pred             CchHHHHHHHHHHHHHcCcccccCCccchhhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence            47888999999999999988763   31 234567788888999999999999999999999999999999999999999


Q ss_pred             HHHHc--CCChHHHHHHHHHhcCchhhHHH-HHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHh-CCccccChHHHH
Q 037575          165 IAKAF--GIPQIFYAGFVLTACVSGAQLSS-YASFLSKGDVAVSILLSSSTTIASVLITPLLTGLLI-GSVIPVDAVAMS  240 (406)
Q Consensus       165 l~~~~--~l~~~~~~GlvL~a~~P~~~~s~-v~t~~~gGd~ala~~~~~~stlls~~~~Pl~l~ll~-g~~v~vd~~~l~  240 (406)
                      +.+++  ..+++++.|+++++|+|++..|+ +||+.+|||.+.++..++++|+++++++|+++.++. ++..++|..+++
T Consensus        81 ~~~l~~~~~~~~l~~Gl~~~~~lPtTv~S~v~~T~~AgGN~a~Al~~~~~snllgv~ltP~ll~l~l~~~~~~~~~~~~~  160 (313)
T PF13593_consen   81 LSRLFPAFLPPELALGLLILACLPTTVSSSVVLTRLAGGNVALALFNAVLSNLLGVFLTPLLLLLLLGGSSVSIDYASVL  160 (313)
T ss_pred             HHHHhhccCCHHHHHHHHHHhhCCchhhHHHHHHHHcCCCHHHHHHHHHHHhhhhHhHHHHHHHHHhcCCcCCCCHHHHH
Confidence            99887  46889999999999999998887 599999999999999999999999999999999999 688999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHhHHHhHhcccchHHHHHHHHHHHHHHHhh-hhHHhh-hh---hHHHHHHHHHHHHHHH
Q 037575          241 KSILQVVLVPVALGLGLNTYAKPVVSFLRPVMPFVAMICTSLCIGSPLAIN-RSQILS-IE---GLQLVLPVLTFHAVAF  315 (406)
Q Consensus       241 ~~ll~~vllPl~lG~llr~~~p~~~~~i~~~l~~is~l~lllii~~~~~~n-~~~i~~-~~---~~~i~~~~lll~~~~f  315 (406)
                      .++...+++|+++|+++|++.+++.+|.++.++.++..+++++++..++.. .+.+.+ ..   ...+....+.++...+
T Consensus       161 ~~L~~~vllP~~~Gq~~r~~~~~~~~~~~~~~~~~~~~~ll~iv~~~fs~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l  240 (313)
T PF13593_consen  161 IKLVLTVLLPLVLGQLLRRWVPKWVARHKKPLSLLSQLALLLIVYSAFSSAFAQGAWHSVSAAALALIVAVSLLLLLVVL  240 (313)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhCCHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999888665 222221 11   1234456778888899


Q ss_pred             HHHHHHhcccCCCCCccceeeeeeecccccHHHHHHHHHHhcCC-----cccHHHHHHHHHHHHHHHHHHHHHhc
Q 037575          316 AVGYWVSKIPSWRQGEEVSRTISLCTGMQSSTLAGLLATQFLGS-----SQAVPPACSVIAMAIMGLCLASFWGS  385 (406)
Q Consensus       316 ~lG~~l~r~~~~~~~~~~~~a~~~~~g~rN~~Lai~lA~~~f~~-----~~alp~~~y~v~q~i~~~~la~~~~~  385 (406)
                      .++++.+|.  ++++++|++++.|++++||.++|+.++...|++     ...+|.++||..|.++++++|.+|+|
T Consensus       241 ~~~~~~~r~--~~~~~~d~iA~~F~gs~Ksl~~gvpl~~~lf~~~~~~~~~~lP~~iyh~~Ql~~~s~la~~~~r  313 (313)
T PF13593_consen  241 VLGWLAARL--LGFSRPDRIAVLFCGSQKSLALGVPLASILFPGHPDLGLIVLPLMIYHPLQLFVGSFLASRLAR  313 (313)
T ss_pred             HHHHHHHhh--cCCChhhEEEEEEEcCcCcchhHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHcC
Confidence            999999998  899999999999999999999999999999975     35899999999999999999999986

>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1e-30  Score=253.67  Aligned_cols=304  Identities=20%  Similarity=0.247  Sum_probs=260.4

Q ss_pred             ccccHHHHHHhHHHHHHHHHHHH----HhhccchhhHhh-------hhhHHHHHHHHHHHhcccCCHHHHHHHhcCchhH
Q 037575           79 ARYDSSQVLSAMLPFVVALTAVA----ALAQPSTFTWVS-------KELYAPALGGIMLSIGIRLSIEDFALAFKRPLPL  147 (406)
Q Consensus        79 ~~~~~~~~l~~~~~~~~~~~~~l----gl~~P~~~~~l~-------~~~~~~~l~~iMf~~Gl~l~~~~l~~~~~~p~~~  147 (406)
                      ++.+..+|++|+++.|+..+.++    |...|+..+.+.       +..+.+.+..+|+.+.+++++++++++.+++|.+
T Consensus         4 ~~~k~l~~~dk~l~~wv~l~i~~Gi~lG~~~p~~~~~l~~~~~~~~sipiai~L~~MmYP~m~ki~~~~~~~v~k~~k~L   83 (342)
T COG0798           4 KEKKKLSFLDKYLTLWVFLAIAIGILLGVHFPGLAQLLGKLEFGGVSIPIAIGLILMMYPPMLKIDFEELKNVFKDPKPL   83 (342)
T ss_pred             hHhhhhhHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccceeCceehhHHHHHHHHHhHHHhcCCHHHHHHHHhcchHH
Confidence            34457899999999988877766    567788544432       1235678888899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHc-CCChHHHHHHHHHhcCchhhHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 037575          148 SVGFVAQYIIKPILGVLIAKAF-GIPQIFYAGFVLTACVSGAQLSSYASFLSKGDVAVSILLSSSTTIASVLITPLLTGL  226 (406)
Q Consensus       148 ~~~l~~~~~l~Plla~~l~~~~-~l~~~~~~GlvL~a~~P~~~~s~v~t~~~gGd~ala~~~~~~stlls~~~~Pl~l~l  226 (406)
                      ...+..|+++.|+++++++++| +..|++..|+++.+..||..++.+|+++++||.++++..+.++.++++++.|.+.++
T Consensus        84 ~lsL~~Nwii~P~lm~~la~~fl~~~pey~~GlILlglApC~aMVivw~~La~Gd~~~tlv~Va~n~l~qiv~y~~~~~~  163 (342)
T COG0798          84 ILSLFVNWIIGPLLMFALAWFFLPDEPEYRAGLILLGLAPCIAMVIVWSGLAKGDRELTLVLVAFNSLLQIVLYAPLGKF  163 (342)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhhhHHHHHHHHhhccCcHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999975 777899999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCc-cccChHHHHHHHHHHHHHHHHHHHHHHhhhHhH------HHhHhcccchHHHHHHHHHHHHHHHhhhhHHhhhh
Q 037575          227 LIGSV-IPVDAVAMSKSILQVVLVPVALGLGLNTYAKPV------VSFLRPVMPFVAMICTSLCIGSPLAINRSQILSIE  299 (406)
Q Consensus       227 l~g~~-v~vd~~~l~~~ll~~vllPl~lG~llr~~~p~~------~~~i~~~l~~is~l~lllii~~~~~~n~~~i~~~~  299 (406)
                      +.|.. ++++++.+.++++..+.+|+++|++.|++..++      .++..|.+++++.+++++.+...++.+.+++.+++
T Consensus       164 ~l~v~~~~v~~~~i~~Sv~lyl~iPli~G~lTR~i~~k~kg~~~~~~~f~p~ispi~ligLl~TivliF~~qg~~Iv~~p  243 (342)
T COG0798         164 FLGVISISVPFWTIAKSVLLYLGIPLIAGVLTRYILIKKKGREWYESRFLPKISPIALIGLLLTIVLIFAFQGEQIVEQP  243 (342)
T ss_pred             HHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcChHHHHHHHHHHHHHHHHhHHHHHhCh
Confidence            98864 899999999999999999999999999986543      25678889999999999999999999999998863


Q ss_pred             h--HHHHHHHHHHHHHHHHHHHHHhcccCCCCCccceeeeeeecccccHHHHHHHHHHhcC--CcccHHHHHHHHHHHHH
Q 037575          300 G--LQLVLPVLTFHAVAFAVGYWVSKIPSWRQGEEVSRTISLCTGMQSSTLAGLLATQFLG--SSQAVPPACSVIAMAIM  375 (406)
Q Consensus       300 ~--~~i~~~~lll~~~~f~lG~~l~r~~~~~~~~~~~~a~~~~~g~rN~~Lai~lA~~~f~--~~~alp~~~y~v~q~i~  375 (406)
                      .  ..++++.++.....+.++|.++|.  .|.+.+++.++++.++.+|..+|+++|.+.|+  +.+++..++..+.+..+
T Consensus       244 ~~i~liAIpl~iy~~~~~~i~~~i~k~--lgl~y~~~~~~~ft~aSNnfeLAiAvAi~lfG~~s~aA~a~vigpLvEVpv  321 (342)
T COG0798         244 LDILLIAIPLLIYFLLMFFISYFIAKA--LGLPYEDAAALVFTGASNNFELAIAVAIALFGLTSGAALATVVGPLVEVPV  321 (342)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCChhhhhceeeeeccccHHHHHHHHHHhcCccccchhhhhccchhhHHH
Confidence            2  234466667777889999999999  78888999999999999999999999999996  34677777777777776


Q ss_pred             HHHHHHHHh
Q 037575          376 GLCLASFWG  384 (406)
Q Consensus       376 ~~~la~~~~  384 (406)
                      --.++..+.
T Consensus       322 ml~lV~v~~  330 (342)
T COG0798         322 MLGLVKVAL  330 (342)
T ss_pred             HHHHHHHHH
Confidence            555555444

>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes

Probab=99.96  E-value=6.8e-29  Score=228.31  Aligned_cols=179  Identities=32%  Similarity=0.475  Sum_probs=156.0

Q ss_pred             HHHHHHHHHhcccCCHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH-HHcCCChHHHHHHHHHhcCchhhHHHHHHHH
Q 037575          119 PALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVLIA-KAFGIPQIFYAGFVLTACVSGAQLSSYASFL  197 (406)
Q Consensus       119 ~~l~~iMf~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~~l~Plla~~l~-~~~~l~~~~~~GlvL~a~~P~~~~s~v~t~~  197 (406)
                      ..++.+||.+|++++++|+++..|||+.+..+++.|++++|+++++++ ..++++++.+.|+++++|||++..+++||++
T Consensus         2 i~l~~~mf~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~~~~~~~~~~~~Gl~l~~~~P~~~~s~~~t~l   81 (187)
T PF01758_consen    2 ILLFLMMFSMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAWLLLPLSPALALGLLLVAACPGGPASNVFTYL   81 (187)
T ss_dssp             -HHHHHHHHHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-HHTT--HHHHHHHHHHHHS-B-THHHHHHHH
T ss_pred             hhhhHHHHHhhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence            467889999999999999999999999999999999999999999999 7889999999999999999999999999999


Q ss_pred             cCCChHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccC---hHHHHHHHHHHHHHHHHHHHHHHhhhH--hHHHhHhccc
Q 037575          198 SKGDVAVSILLSSSTTIASVLITPLLTGLLIGSVIPVD---AVAMSKSILQVVLVPVALGLGLNTYAK--PVVSFLRPVM  272 (406)
Q Consensus       198 ~gGd~ala~~~~~~stlls~~~~Pl~l~ll~g~~v~vd---~~~l~~~ll~~vllPl~lG~llr~~~p--~~~~~i~~~l  272 (406)
                      +|||.++++.++.++|+++++++|+++.++.+...++|   ++++..+++..+++|+.+|+++|++.|  +..+++++..
T Consensus        82 ~~Gd~~ls~~lt~istll~~~~~P~~~~l~~~~~~~~~~~~~~~~~~~~l~~v~lPl~lG~l~r~~~p~~~~~~~~~~~~  161 (187)
T PF01758_consen   82 AGGDVALSVSLTLISTLLAPFLMPLLLYLLSGGSVDVDSISPWDIIKSLLLIVILPLLLGMLLRKYLPREKFARRLKPFL  161 (187)
T ss_dssp             TT--HHHHHHHHHHHHHHHHHHHHHHHHHHH-GGGHHH---HHHHHHHHHHHTHHHHHHHHHHHHHHG-GGG-HHHHCCH
T ss_pred             hCCCcccccceeeHHHHHHHHHHHHHHHHHhccccCCchhhHHHHHHHHHheehHHHhHHHHHHHHhhHHHHHHHHHHHh
Confidence            99999999999999999999999999999998877777   899999999999999999999999999  7888999999


Q ss_pred             chHHHHHHHHHHHHHHHhhhhHHhh
Q 037575          273 PFVAMICTSLCIGSPLAINRSQILS  297 (406)
Q Consensus       273 ~~is~l~lllii~~~~~~n~~~i~~  297 (406)
                      +.++.+++++++...++.|.+.+.+
T Consensus       162 ~~~s~~~l~~~i~~~~~~~~~~i~~  186 (187)
T PF01758_consen  162 KPLSFILLLLIIVLIFASNASVIAS  186 (187)
T ss_dssp             HHHHHHHHHHHHHHHHHHTH-----
T ss_pred             hHHHHHHHHHHHHHHHHHhcccccC
Confidence            9999999999998888888877654

They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.

>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]

Probab=99.94  E-value=9.2e-27  Score=231.40  Aligned_cols=275  Identities=40%  Similarity=0.591  Sum_probs=240.5

Q ss_pred             HHHHHHHHHHHHHhhcc-chhhHhhhhhHHHHHHHHHHHhcccCCHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHH
Q 037575           90 MLPFVVALTAVAALAQP-STFTWVSKELYAPALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVLIAKA  168 (406)
Q Consensus        90 ~~~~~~~~~~~lgl~~P-~~~~~l~~~~~~~~l~~iMf~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~~l~Plla~~l~~~  168 (406)
                      ..+.+.....+.....| ..+.|+...+..+.+...|+++|++.+++++++.+++|..+..+++.|+++||+.++.+++.
T Consensus        87 ~lp~~~~~~~v~~~~~~~~~~t~l~~~~~~~gl~~~~ls~g~~~~~~~~~~~~~rP~~~~lG~v~q~~i~pl~~f~~~~~  166 (371)
T KOG2718|consen   87 ILPLLVFLLKVLFLLDPLLAFTWLVTGCFPPGLLSNMLSFGIKLDMDLFAGMIKRPTPLALGFVPQYLIMPLLGFLLSKV  166 (371)
T ss_pred             chhHHHHHHHHHhhcCCcccceEEEeCccccHHHHHHHHHhcCccHHHHhhHhhCCcceeehHHHHHHHHHHHHHhhhhH
Confidence            45677777777777777 78888776777888899999999999999999999999999999999999999999999999


Q ss_pred             cCCChHHHHHHHHHhcCchhhHHHHHHHHc-CCChHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccChHHHHHHHHHHH
Q 037575          169 FGIPQIFYAGFVLTACVSGAQLSSYASFLS-KGDVAVSILLSSSTTIASVLITPLLTGLLIGSVIPVDAVAMSKSILQVV  247 (406)
Q Consensus       169 ~~l~~~~~~GlvL~a~~P~~~~s~v~t~~~-gGd~ala~~~~~~stlls~~~~Pl~l~ll~g~~v~vd~~~l~~~ll~~v  247 (406)
                      +.+|..+++|.+++.|++++..++..+.+. +||+.+++.+|.++|+.+++++|++-.++.+..++.|...+..+.+..+
T Consensus       167 ~~lP~~~~ag~~Lvtc~~p~g~~~~~~~~~~~g~v~lsilmT~~stv~avi~~pl~s~~l~~~l~~~d~~~v~~s~~~vv  246 (371)
T KOG2718|consen  167 LLLPAALAAGLLLVTCVSPGGGGNYLTSKRLPGDVTLSILMTTISTVLAVILTPLLSILLGRALIPVDALGVIASILQVV  246 (371)
T ss_pred             hhCCccccceeEEEEeccCCcchhhheeecCCcchhhHHHHHHHHHHHHHHHHHHHHHhhchhhhcccchhhhhhhhHHh
Confidence            988888877888887777777777655555 9999999999999999999999999999999999999988888889999


Q ss_pred             HHHHHHHHHHHhhhHhHHHhHhcccchHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 037575          248 LVPVALGLGLNTYAKPVVSFLRPVMPFVAMICTSLCIGSPLAINRSQILSIEGLQLVLPVLTFHAVAFAVGYWVSKIPSW  327 (406)
Q Consensus       248 llPl~lG~llr~~~p~~~~~i~~~l~~is~l~lllii~~~~~~n~~~i~~~~~~~i~~~~lll~~~~f~lG~~l~r~~~~  327 (406)
                      .+|+.+|.++|+++|++...+.+.++.++.+...+++......|.+.+.. ..++++..+..+++++|..||+.++.  .
T Consensus       247 ~~pl~lG~lL~~~~~k~t~~i~~~~~~vsv~~t~l~~~~p~~~n~~~~~~-~~~~i~~~~~~l~l~g~l~~Y~~~~~--~  323 (371)
T KOG2718|consen  247 GLPLALGLLLNKWFPKRTVAIEPGLPPVSVCLTILCLAFPPGENGYLFLF-FGYQILLLGAALPLAGFLAGYLLSFS--P  323 (371)
T ss_pred             HHHHHHHHHhcccCccceeeeecCCCchHHHhhhhhhcCChhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcc--c
Confidence            99999999999999999999999999999999999998888888888777 58899999999999999999999744  2


Q ss_pred             CCCccceeeeeeecccccHHHHHHHHHHhcCC-cccHHHHH
Q 037575          328 RQGEEVSRTISLCTGMQSSTLAGLLATQFLGS-SQAVPPAC  367 (406)
Q Consensus       328 ~~~~~~~~a~~~~~g~rN~~Lai~lA~~~f~~-~~alp~~~  367 (406)
                      ..++.++|++++|+|+||..++.++++..+.| ..+.|++.
T Consensus       324 ~~~~a~~~tisie~g~q~s~~a~~l~t~~~~dpl~~~~~~~  364 (371)
T KOG2718|consen  324 LDDVATARTISIETGMQNSLLALALATKHLQDPLVVVPPAT  364 (371)
T ss_pred             cchhhhhcchHHHhccchhHHHHHHhhcccCCceeeeccch
Confidence            22255889999999999999999999988864 44555543

>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family

Probab=99.64  E-value=3.3e-15  Score=148.35  Aligned_cols=192  Identities=17%  Similarity=0.179  Sum_probs=148.0

Q ss_pred             CcccccccchhhccCCCCCccC-c-----CCcccc---chheeeccc------cccC-----Cc--cccc--------cc
Q 037575           33 QKSVKANGGLCTLACSTSPFVG-R-----VGLQRR---EGNVSLLSF------GINA-----GS--VVAR--------YD   82 (406)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~g-~-----~g~~~~---~~~~~~~~f------~~~~-----~~--~~~~--------~~   82 (406)
                      .++.+++...+++.++|..|+| |     +|+.+-   ..++.++..      ...+     ++  ++++        .+
T Consensus        95 ~~~~~~~~~~~~~~~~N~~~~GlPl~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (321)
T TIGR00946        95 ADYGKLSGFLLVSALPNTAFIGYPLLLSLFGEEGAKILIAALFIDTGAVLMTIALGLFLVSEDGAGGEGSGESTRLMLIF  174 (321)
T ss_pred             cccchhhHHHHHhhhccceeehHHHHHHHhcccchhhhHHHHHHHhccchhHHHHHHHHhccccccccccchhHHHHHHH
Confidence            3456778888899999999999 8     998873   333222211      1111     11  1111        02


Q ss_pred             HHHHHHhHHHHHHHHHHHH----HhhccchhhHhhhhhHHHHHHHHHHHhcccCCHHHHHHHhcCchhHHHHHHHHHHHH
Q 037575           83 SSQVLSAMLPFVVALTAVA----ALAQPSTFTWVSKELYAPALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIK  158 (406)
Q Consensus        83 ~~~~l~~~~~~~~~~~~~l----gl~~P~~~~~l~~~~~~~~l~~iMf~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~~l~  158 (406)
                      ..+.+-++++++....+++    |+..|+......+..-..+.++.|+.+|+.++.++.+   ++.+.......+++++.
T Consensus       175 ~~~~~~~nP~iia~i~Gl~~~~~~i~lP~~l~~~l~~lg~~~~plaLl~lG~~l~~~~~~---~~~~~~~~~~~~klil~  251 (321)
T TIGR00946       175 VWKKLIKFPPLWAPLLSVILSLVGFKMPGLILKSISILSGATTPMALFSLGLALSPRKIK---LGVRDAILALIVRFLVQ  251 (321)
T ss_pred             HHHHHHhCCChHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhc---cChHHHHHHHHHHHHHH
Confidence            3444556777776666655    7778988776655555677889999999999887764   34466777888899999


Q ss_pred             HHHHHHHHHHcCCChHHHHHHHHHhcCchhhHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037575          159 PILGVLIAKAFGIPQIFYAGFVLTACVSGAQLSSYASFLSKGDVAVSILLSSSTTIASVLITPLLTGLL  227 (406)
Q Consensus       159 Plla~~l~~~~~l~~~~~~GlvL~a~~P~~~~s~v~t~~~gGd~ala~~~~~~stlls~~~~Pl~l~ll  227 (406)
                      |++++++...++++++.....++++++|++..+.++++++|+|.+++...+.+||++|++++|+|++++
T Consensus       252 P~i~~~~~~~~~l~~~~~~~~vl~aa~P~a~~~~i~A~~y~~~~~~aa~~v~~sT~ls~~tlp~~~~l~  320 (321)
T TIGR00946       252 PAVMAGISKLIGLRGLELSVAILQAALPGGAVAAVLATEYEVDVELASTAVTLSTVLSLISLPLFIILL  320 (321)
T ss_pred             HHHHHHHHHHhCCChHHHHHHHHHHcCChhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999999999999999864

>PRK09903 putative transporter YfdV; Provisional

Probab=99.56  E-value=4.8e-14  Score=139.77  Aligned_cols=188  Identities=12%  Similarity=0.068  Sum_probs=140.6

Q ss_pred             cccccchhhccCCCCCccC-c-----CCcccc---chheeecccc----------ccC-Cc-cccc---ccHHHHHHhHH
Q 037575           36 VKANGGLCTLACSTSPFVG-R-----VGLQRR---EGNVSLLSFG----------INA-GS-VVAR---YDSSQVLSAML   91 (406)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~g-~-----~g~~~~---~~~~~~~~f~----------~~~-~~-~~~~---~~~~~~l~~~~   91 (406)
                      .+++...+...++|..|+| |     +|+.+.   ..++.++...          .+. ++ ++++   .+..+.+-+++
T Consensus        95 ~~~~~~~~~~~~~N~gf~G~Pl~~~~~G~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~nP  174 (314)
T PRK09903         95 AEAAVCALIAGSPTIGFLGFAVLDPIYGDSVSTGLVVAIISIIVNAITIPIGLYLLNPSSGADGKKNSNLSALISAAKEP  174 (314)
T ss_pred             chhhHhhhhhcCCCcccccHHHHHHHcCchhhhhhHHHHHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHhch
Confidence            3445566778899999999 8     888743   2222211110          010 11 1111   12344456778


Q ss_pred             HHHHHHHHHH----HhhccchhhHhhhhhHHHHHHHHHHHhcccCCHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHH
Q 037575           92 PFVVALTAVA----ALAQPSTFTWVSKELYAPALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVLIAK  167 (406)
Q Consensus        92 ~~~~~~~~~l----gl~~P~~~~~l~~~~~~~~l~~iMf~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~~l~Plla~~l~~  167 (406)
                      +++....+++    |+..|++.....+..-..+.++.|+.+|.+++..+++   .+ +......+.++++.|++++++..
T Consensus       175 ~iia~~~gl~~~l~~i~lP~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~~---~~-~~~~~~~~~Kli~~P~i~~~~~~  250 (314)
T PRK09903        175 VVWAPVLATILVLVGVKIPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFE---FS-AEIAYNTFLKLILMPLALLLVGM  250 (314)
T ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---cc-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            8777777664    7788988876655555677889999999998877653   12 33456677899999999998888


Q ss_pred             HcCCChHHHHHHHHHhcCchhhHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037575          168 AFGIPQIFYAGFVLTACVSGAQLSSYASFLSKGDVAVSILLSSSTTIASVLITPLLTGLL  227 (406)
Q Consensus       168 ~~~l~~~~~~GlvL~a~~P~~~~s~v~t~~~gGd~ala~~~~~~stlls~~~~Pl~l~ll  227 (406)
                      .+++++......++++++|++..+.++++++|+|.++++..+.+||++|.+++|+|++++
T Consensus       251 ~~~l~~~~~~v~vl~aa~P~a~~~~i~A~~y~~~~~~aa~~v~~sTlls~iTlpl~~~l~  310 (314)
T PRK09903        251 ACHLNSEHLQMMVLAGALPPAFSGIIIASRFNVYTRTGTASLAVSVLGFVVTAPLWIYVS  310 (314)
T ss_pred             HcCCCcHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            889999999999999999999999999999999999999999999999999999999875

>COG0679 Predicted permeases [General function prediction only]

Probab=99.49  E-value=2.7e-13  Score=134.34  Aligned_cols=190  Identities=17%  Similarity=0.202  Sum_probs=149.9

Q ss_pred             cccchhhccCCCCCccC-c-----CCccccchheeeccccccC------------Cccc--ccccHHHHHHhHHHHHHHH
Q 037575           38 ANGGLCTLACSTSPFVG-R-----VGLQRREGNVSLLSFGINA------------GSVV--ARYDSSQVLSAMLPFVVAL   97 (406)
Q Consensus        38 ~~~~~~~~~~~~~~~~g-~-----~g~~~~~~~~~~~~f~~~~------------~~~~--~~~~~~~~l~~~~~~~~~~   97 (406)
                      .+...++++++|..|+| |     +|+.+-+.++-++....-.            +++.  ...+..+.+.++++++..+
T Consensus        96 ~~~~~~~~~~~N~g~lg~pi~~~~~G~~gl~~~~i~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~nP~i~a~i  175 (311)
T COG0679          96 TVIFALASAFPNIGFLGLPVALSLFGEKGLAYAVIFLIIGLFLMFTLGVILLARSGGGTNKSLLSVLKKLLTNPLIIALI  175 (311)
T ss_pred             HHHHHHHHHhcccchhhHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHhCcHHHHHH
Confidence            34667799999999999 7     8888777665332222111            2222  2235677888999988887


Q ss_pred             HHHH----HhhccchhhHhhhhhHHHHHHHHHHHhcccCCHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHcCCCh
Q 037575           98 TAVA----ALAQPSTFTWVSKELYAPALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVLIAKAFGIPQ  173 (406)
Q Consensus        98 ~~~l----gl~~P~~~~~l~~~~~~~~l~~iMf~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~~l~Plla~~l~~~~~l~~  173 (406)
                      .+.+    |+..|+......+..-....+..|+.+|++++.+..+  ..+++........+++++|+.++.+++.+++++
T Consensus       176 ~g~~~~~~~i~lP~~~~~~~~~l~~a~~pl~li~lG~~L~~~~~~--~~~~~~~~~~~~~kll~~Pl~~~~~~~~~~l~~  253 (311)
T COG0679         176 LGLLLNLLGISLPAPLDTAVDLLASAASPLALIALGLSLAFLKLK--GSKPPIILIALSLKLLLAPLVALLVAKLLGLSG  253 (311)
T ss_pred             HHHHHHHcCCCCcHHHHHHHHHHHHhhhhHHHHHHhhhcchhhhc--cccchhHHHHHHHHHHHHHHHHHHHHHHcCCCh
Confidence            7766    7888987766545555678889999999999995554  233455666666699999999999999999999


Q ss_pred             HHHHHHHHHhcCchhhHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 037575          174 IFYAGFVLTACVSGAQLSSYASFLSKGDVAVSILLSSSTTIASVLITPLLTGLLIG  229 (406)
Q Consensus       174 ~~~~GlvL~a~~P~~~~s~v~t~~~gGd~ala~~~~~~stlls~~~~Pl~l~ll~g  229 (406)
                      +....+++++++|++..+.++++++++|.+++...+.+||+++.+++|.+...+..
T Consensus       254 ~~~~v~vl~~a~P~A~~~~v~a~~~~~~~~laa~~i~ist~ls~~t~p~~~~~l~~  309 (311)
T COG0679         254 LALQVLVLLSAMPTAVNAYVLARQYGGDPRLAASTILLSTLLSLLTLPLLILLLLR  309 (311)
T ss_pred             HHHHHHHHHhhCcHHhHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            98888899999999999999999999999999999999999999999999877653

>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea

Probab=99.00  E-value=2.8e-09  Score=108.03  Aligned_cols=135  Identities=21%  Similarity=0.171  Sum_probs=102.8

Q ss_pred             hHHHHHHHHH-HHHHh---hcc----chhhHhhhhhHHHHHHHHHHHhcccCCHHHHHHHhcCchhHHHHHHHHHHHHHH
Q 037575           89 AMLPFVVALT-AVAAL---AQP----STFTWVSKELYAPALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPI  160 (406)
Q Consensus        89 ~~~~~~~~~~-~~lgl---~~P----~~~~~l~~~~~~~~l~~iMf~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~~l~Pl  160 (406)
                      ++++++..+. .++++   ..|    .+.....+.+-....++.|+.+|..+.....+...+ .+......+.+++++|+
T Consensus       243 ~nP~~~a~~lgli~~~~~~~~~~~~~~~i~~~~~~lg~~~~pl~l~~lG~~l~~~~~~~~~~-~~~~~~~~~~rlii~P~  321 (385)
T PF03547_consen  243 KNPPLIAIILGLIIGLIPPLRPLFFPSFITDSLSYLGAAAVPLALFVLGASLARGPRKSALG-WKPSIIAVLVRLIILPL  321 (385)
T ss_pred             hCcHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCcccchh-hHHHHHHHHHHHHHHHH
Confidence            4455554443 33333   344    444443334345667788899999887655432222 23344467889999999


Q ss_pred             HHHHHHHHcCCChHHHHHHHHHhcCchhhHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHH
Q 037575          161 LGVLIAKAFGIPQIFYAGFVLTACVSGAQLSSYASFLSKGDVAVSILLSSSTTIASVLITPLLT  224 (406)
Q Consensus       161 la~~l~~~~~l~~~~~~GlvL~a~~P~~~~s~v~t~~~gGd~ala~~~~~~stlls~~~~Pl~l  224 (406)
                      +++++.+.++++++....+++.+++|++..+.+++.+++.|.+.+...+..+|+++++++|+|+
T Consensus       322 i~~~~~~~~~l~~~~~~~~~~~~~~P~a~~~~~~a~~~~~~~~~~s~~~~~~~~~~~~~~~~~~  385 (385)
T PF03547_consen  322 IGIGIVFLLGLDGDMARVLILQAAMPTAINSFVIASLYGLDEEEASSIVFWSTLLSIPTLPLWI  385 (385)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHhccCCchHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHC
Confidence            9999999999999988888999999999999999999999999999999999999999999984

Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane

>KOG4821 consensus Predicted Na+-dependent cotransporter [General function prediction only]

Probab=98.83  E-value=6.4e-09  Score=95.59  Aligned_cols=183  Identities=19%  Similarity=0.187  Sum_probs=135.1

Q ss_pred             cHHHHH-HhHHHHHHHHHHHHHhhccchhhH---hhhhhH--HHHHHHHHHHhcccCCHHHHHHHhcCchhHHHHHHHHH
Q 037575           82 DSSQVL-SAMLPFVVALTAVAALAQPSTFTW---VSKELY--APALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQY  155 (406)
Q Consensus        82 ~~~~~l-~~~~~~~~~~~~~lgl~~P~~~~~---l~~~~~--~~~l~~iMf~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~  155 (406)
                      +..++. ++|+...+.++...+=+-|+.+..   +.+.+.  -..+..+++..|++++.+++..+.+++++.+++++..+
T Consensus        15 R~~e~~~~~Wf~~~I~~~i~~aKL~p~~G~~gG~Lk~~ys~~yI~va~IF~~SGL~LkTE~l~aA~~~w~LhLFilI~~L   94 (287)
T KOG4821|consen   15 RVTEFLKSQWFFICIAILIVIAKLAPNFGRDGGLLKGQYSIGYICVAWIFLQSGLGLKTESLMAAMLNWRLHLFILILSL   94 (287)
T ss_pred             HHHHHHhcchHHHHHHHhhhHhhhCCCCCccCCcccCceeEEeEEEEEEEeecCccccHHHHHHHHhCCchHHHHHHHHH
Confidence            345555 477888877777777777776532   212221  13445677899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHc---CCChHHHHHHHHHhcCchhhHHHH-HHHHcCCChHH-HHHHHHHHHHHHHHHHHHHHHHHhCC
Q 037575          156 IIKPILGVLIAKAF---GIPQIFYAGFVLTACVSGAQLSSY-ASFLSKGDVAV-SILLSSSTTIASVLITPLLTGLLIGS  230 (406)
Q Consensus       156 ~l~Plla~~l~~~~---~l~~~~~~GlvL~a~~P~~~~s~v-~t~~~gGd~al-a~~~~~~stlls~~~~Pl~l~ll~g~  230 (406)
                      ++.|...+++....   +.|+++..|+.+.+|||+.++|++ .|..+|||.+. .......+.+.+....|-....++.+
T Consensus        95 l~tPs~~~Lf~~~~~~~~i~~wLl~GL~~~~CMPttvSS~ViLT~~aGGNa~A~~v~S~f~g~L~~~~i~~~l~q~LL~~  174 (287)
T KOG4821|consen   95 LITPSIVYLFCCAVKAAKIDDWLLIGLILTACMPTTVSSNVILTTNAGGNASALCVCSVFIGNLLGAFITPALVQMLLNR  174 (287)
T ss_pred             HHhHHHHHHHHHHHhCcchhHHHHhhheeeeecCCccccceeeeeccCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHcc
Confidence            99999999987764   356688899999999999999996 99999999842 23344556666666777666666532


Q ss_pred             c--------cccC----hHHHHHHHHHHHHHHHHHHHHHHhhhHhH
Q 037575          231 V--------IPVD----AVAMSKSILQVVLVPVALGLGLNTYAKPV  264 (406)
Q Consensus       231 ~--------v~vd----~~~l~~~ll~~vllPl~lG~llr~~~p~~  264 (406)
                      .        +.+.    ...++++....+++|...|.......|+-
T Consensus       175 ~~~~~~~~a~g~gi~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  220 (287)
T KOG4821|consen  175 APFAYGNPATGNGIGALYGRVMKQVGLSVFVPLFVGQVIQNCFPKG  220 (287)
T ss_pred             CCccccCccccchHHHHHHHHHHhhcceEEehhhcccccccccCCc
Confidence            1        1111    23456666777899999999999887764

>PRK12460 2-keto-3-deoxygluconate permease; Provisional

Probab=98.81  E-value=3.6e-07  Score=89.55  Aligned_cols=286  Identities=19%  Similarity=0.198  Sum_probs=166.5

Q ss_pred             HHHHHHhHH----HHHHHHHHHHHhhccchhhH------hhhhhHHHHHHHHHHHhcccCCHHHHHHHhcCchhHHHHHH
Q 037575           83 SSQVLSAML----PFVVALTAVAALAQPSTFTW------VSKELYAPALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFV  152 (406)
Q Consensus        83 ~~~~l~~~~----~~~~~~~~~lgl~~P~~~~~------l~~~~~~~~l~~iMf~~Gl~l~~~~l~~~~~~p~~~~~~l~  152 (406)
                      +.++++|.+    .+=+.+++++.-.+|+.++.      +-+.-..+.+.+.+|++|.+++.++..+..+|--.   .++
T Consensus         3 i~~~~~kiPgg~m~vPl~lga~inTf~P~~l~iG~fT~alf~~g~~~il~~~~~~~Ga~I~~k~~~~~l~kg~~---l~~   79 (312)
T PRK12460          3 IKKAIKKIPGGMMVVPLLIGALINTFFPQALEIGGFTTALFKTGAAPLLGAFLLCMGAQISLKAAPQALLKGGV---LTI   79 (312)
T ss_pred             hhhhhccCCCceeHHHHHHHHHHHhccCcchhhCcccHHHHhcChHHHHHHHHHHhcCeeeccccchhhhhhhh---hhh
Confidence            445555553    22244566778888877532      11223456778888999999999999888876432   234


Q ss_pred             HHHHHHHHHHHHHHHHcCCChHHHHHH-HHHhcCchhhHHHH---HHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037575          153 AQYIIKPILGVLIAKAFGIPQIFYAGF-VLTACVSGAQLSSY---ASFLSKGDVAVSILLSSSTTIASVLITPLLTGLLI  228 (406)
Q Consensus       153 ~~~~l~Plla~~l~~~~~l~~~~~~Gl-vL~a~~P~~~~s~v---~t~~~gGd~ala~~~~~~stlls~~~~Pl~l~ll~  228 (406)
                      .|+++-=++++.+++++|.+..+-... .+.+++--. ...+   ++..+|-+.+- -+....    ++-.-|+...+.+
T Consensus        80 ~K~~~~~~~g~~~~~~~g~~g~~Gls~laiiaa~~~~-Ng~ly~al~~~yG~~~d~-gA~~~~----sl~~GPf~tm~aL  153 (312)
T PRK12460         80 TKLGVAIVIGLLVGKFFGAEGIFGLSGLAIVAAMSNS-NGGLYAALMGEFGDERDV-GAISIL----SLNDGPFFTMLAL  153 (312)
T ss_pred             HHHHHHHHHHHHHHHHcCcccccchHHHHHHHHHhcC-cHHHHHHHHHHcCCHhhh-hHHhhh----hhccCcHHHHHHH
Confidence            688887788899999998766332211 233333222 2223   35555544433 333222    3333344444443


Q ss_pred             CC--ccccChHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHhHhcccchHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHH
Q 037575          229 GS--VIPVDAVAMSKSILQVVLVPVALGLGLNTYAKPVVSFLRPVMPFVAMICTSLCIGSPLAINRSQILSIEGLQLVLP  306 (406)
Q Consensus       229 g~--~v~vd~~~l~~~ll~~vllPl~lG~llr~~~p~~~~~i~~~l~~is~l~lllii~~~~~~n~~~i~~~~~~~i~~~  306 (406)
                      +.  -.++++..+     .-.++|+++|++++...+++.+..++-.+..-.   +..+..-...|-+++.+. ++.-++.
T Consensus       154 ga~gLA~ip~~~l-----v~lilpILiGmilGNld~~~~~~l~~Gi~f~I~---f~~f~LG~~lnl~~I~~~-G~~GIlL  224 (312)
T PRK12460        154 GAAGLANIPIMAL-----VAALLPLVLGMILGNLDPDMRKFLTKGGPLLIP---FFAFALGAGINLSMLLQA-GLAGILL  224 (312)
T ss_pred             HHHHHhcCChHHH-----HHHHHHHHHHHHHhccchhhHHHHhccceEeHH---HHHHHhcCCeeHHHHHHh-ChHHHHH
Confidence            32  134554332     348999999999999887777777766654111   111111123355666664 5555556


Q ss_pred             HHHHHHHHHHHHHHHhcccCCCCCccceeeeeeecccccHHHHHHHHHHhcCC----c---ccHHHHHHHHHHHHHHHHH
Q 037575          307 VLTFHAVAFAVGYWVSKIPSWRQGEEVSRTISLCTGMQSSTLAGLLATQFLGS----S---QAVPPACSVIAMAIMGLCL  379 (406)
Q Consensus       307 ~lll~~~~f~lG~~l~r~~~~~~~~~~~~a~~~~~g~rN~~Lai~lA~~~f~~----~---~alp~~~y~v~q~i~~~~l  379 (406)
                      .++.....+..+|+++|+  +|.+++.  +....+..-| +++..-|...-+|    .   +..=++-..+...+...++
T Consensus       225 ~v~vv~~t~~~~~~i~rl--lg~~~~~--g~li~stAGn-AIcgpAAVaAadP~~~~~~~~Ataqvaa~vivTail~P~~  299 (312)
T PRK12460        225 GVLVTIVTGFFNIFADRL--VGGTGIA--GAAASSTAGN-AVATPLAIAAADPSLAPVAAAATAQVAASVIVTAILTPLL  299 (312)
T ss_pred             HHHHHHHHHHHHHHHHHH--hCCChhH--HHHHHHHhhH-HHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666667888899999998  6665554  3333322445 3333333322232    1   1122344567788889999


Q ss_pred             HHHHhcCccccc
Q 037575          380 ASFWGSGSRIRD  391 (406)
Q Consensus       380 a~~~~~~~~~~~  391 (406)
                      .+||.||.++|+
T Consensus       300 t~~~~k~~~~~~  311 (312)
T PRK12460        300 TSWVAKKEAKKK  311 (312)
T ss_pred             HHHHHHHhcccc
Confidence            999999988765

>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]

Probab=98.19  E-value=1.6e-06  Score=87.26  Aligned_cols=230  Identities=18%  Similarity=0.211  Sum_probs=155.9

Q ss_pred             HHHHHHhcccCCHHHHHHHhcCchhHHHHHHHHHH-HHHHHHHHHHHHcCCChHHHHHHHHHhcCchhhHHHHHHHHcCC
Q 037575          122 GGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYI-IKPILGVLIAKAFGIPQIFYAGFVLTACVSGAQLSSYASFLSKG  200 (406)
Q Consensus       122 ~~iMf~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~~-l~Plla~~l~~~~~l~~~~~~GlvL~a~~P~~~~s~v~t~~~gG  200 (406)
                      ...|+..|++++.+.+.++.++++.+...+..++- ++|...+.....+..++......+...++|++..+++++.-.++
T Consensus        51 ~~~~~~~~c~~~i~~~~~h~~~~~g~~v~~~~~~~~~lp~~~~~~~v~~~~~~~~~~t~l~~~~~~~gl~~~~ls~g~~~  130 (371)
T KOG2718|consen   51 NFVMFSLGCNLTISLLWRHSLRSWGILVALKEAFGLILPLLVFLLKVLFLLDPLLAFTWLVTGCFPPGLLSNMLSFGIKL  130 (371)
T ss_pred             hHhhcccccceeccchhhhhcCcceeeeehhhccccchhHHHHHHHHHhhcCCcccceEEEeCccccHHHHHHHHHhcCc
Confidence            37889999999999999988888777777778888 99999999988888888777888999999999999999999999


Q ss_pred             ChHHHHHHHHHHHHHHHHHHH-HHHHHHhC----CccccChHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHhHhcccchH
Q 037575          201 DVAVSILLSSSTTIASVLITP-LLTGLLIG----SVIPVDAVAMSKSILQVVLVPVALGLGLNTYAKPVVSFLRPVMPFV  275 (406)
Q Consensus       201 d~ala~~~~~~stlls~~~~P-l~l~ll~g----~~v~vd~~~l~~~ll~~vllPl~lG~llr~~~p~~~~~i~~~l~~i  275 (406)
                      |.+....++.-.+.+.+..+| ++++=+.|    .....|...-..-++.....|...|..++...++-...+...+..+
T Consensus       131 ~~~~~~~~~~rP~~~~lG~v~q~~i~pl~~f~~~~~~~lP~~~~ag~~Lvtc~~p~g~~~~~~~~~~~g~v~lsilmT~~  210 (371)
T KOG2718|consen  131 DMDLFAGMIKRPTPLALGFVPQYLIMPLLGFLLSKVLLLPAALAAGLLLVTCVSPGGGGNYLTSKRLPGDVTLSILMTTI  210 (371)
T ss_pred             cHHHHhhHhhCCcceeehHHHHHHHHHHHHHhhhhHhhCCccccceeEEEEeccCCcchhhheeecCCcchhhHHHHHHH
Confidence            999999999888888877777 33322222    1122222111222345668899999988887754333333333334


Q ss_pred             HHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHH--HHHHHHHhcccCCCCCccceeeeeeecccccHHHHHHHH
Q 037575          276 AMICTSLCIGSPLAINRSQILSIEGLQLVLPVLTFHAVA--FAVGYWVSKIPSWRQGEEVSRTISLCTGMQSSTLAGLLA  353 (406)
Q Consensus       276 s~l~lllii~~~~~~n~~~i~~~~~~~i~~~~lll~~~~--f~lG~~l~r~~~~~~~~~~~~a~~~~~g~rN~~Lai~lA  353 (406)
                      +.++.+++.-..-....+.+.......+..  -.+.+++  +.+|+++.+.       -.+++..++.++||.++...+-
T Consensus       211 stv~avi~~pl~s~~l~~~l~~~d~~~v~~--s~~~vv~~pl~lG~lL~~~-------~~k~t~~i~~~~~~vsv~~t~l  281 (371)
T KOG2718|consen  211 STVLAVILTPLLSILLGRALIPVDALGVIA--SILQVVGLPLALGLLLNKW-------FPKRTVAIEPGLPPVSVCLTIL  281 (371)
T ss_pred             HHHHHHHHHHHHHHhhchhhhcccchhhhh--hhhHHhHHHHHHHHHhccc-------CccceeeeecCCCchHHHhhhh
Confidence            443333222111111222332221222222  3344444  8889888854       2235778999999999998887


Q ss_pred             HHhcCCc
Q 037575          354 TQFLGSS  360 (406)
Q Consensus       354 ~~~f~~~  360 (406)
                      ...|++.
T Consensus       282 ~~~~p~~  288 (371)
T KOG2718|consen  282 CLAFPPG  288 (371)
T ss_pred             hhcCChh
Confidence            7777764

>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi

Probab=98.18  E-value=0.00022  Score=69.93  Aligned_cols=276  Identities=20%  Similarity=0.293  Sum_probs=154.6

Q ss_pred             HHHHHHHHHHHhhccchhhHh---hh---hhHHHHHHHHHHHhcccCCHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHH
Q 037575           92 PFVVALTAVAALAQPSTFTWV---SK---ELYAPALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVLI  165 (406)
Q Consensus        92 ~~~~~~~~~lgl~~P~~~~~l---~~---~~~~~~l~~iMf~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~~l~Plla~~l  165 (406)
                      .+=+.++.++.-.+|+.++..   .+   .-..+.+.+.+|++|.+++.++..+..||--.   .++.|+++-=++++++
T Consensus        16 vVPLllgalinTf~P~~l~~iG~fT~al~~G~~~iig~~l~~~Ga~I~~k~~~~~lkkg~~---ll~~K~~~~~~lgl~~   92 (314)
T PF03812_consen   16 VVPLLLGALINTFFPNALEIIGGFTTALFTGANPIIGVFLFCMGAQIDLKSAGKVLKKGGV---LLLVKFIIGALLGLLV   92 (314)
T ss_pred             HHHHHHHHHHHhcCCChhhccCcHHHHHHcchHHHHHHHHHHhccccchhhhhHHHHhhhH---HHHHHHHHHHHHHHHH
Confidence            444556677778888876521   11   11356777788999999999999999876433   3356888888889999


Q ss_pred             HHHcCCChH---HHHHH---HHHhcCchhhHHH--HHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhCC--ccccC
Q 037575          166 AKAFGIPQI---FYAGF---VLTACVSGAQLSS--YASFLSKGDVAVSILLSSSTTIASVLITPLLTGLLIGS--VIPVD  235 (406)
Q Consensus       166 ~~~~~l~~~---~~~Gl---vL~a~~P~~~~s~--v~t~~~gGd~ala~~~~~~stlls~~~~Pl~l~ll~g~--~v~vd  235 (406)
                      .++++.+..   ...|+   .+++++-....+-  .++..+|-+.+-+ +..    ++++..-|+...+.+|.  ..++|
T Consensus        93 ~~~fg~~Gi~~g~f~GlS~LAiiaa~~~~NggLY~aL~~~yGd~~D~g-A~~----i~sl~~GPf~tMl~LG~sG~a~ip  167 (314)
T PF03812_consen   93 GKFFGPEGIQSGFFLGLSALAIIAAMTNSNGGLYLALMGQYGDEEDVG-AFS----ILSLNDGPFFTMLALGASGLANIP  167 (314)
T ss_pred             HHHcCccccccccccchHHHHHHHHHhcCCHHHHHHHHHHhCCHHHhH-HHH----HHHhhhhHHHHHHHHhhccccCCC
Confidence            999987642   22333   3344443322222  2455555444433 332    34555566666666653  35677


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHhHhcccchHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHHH
Q 037575          236 AVAMSKSILQVVLVPVALGLGLNTYAKPVVSFLRPVMPFVAMICTSLCIGSPLAINRSQILSIEGLQLVLPVLTFHAVAF  315 (406)
Q Consensus       236 ~~~l~~~ll~~vllPl~lG~llr~~~p~~~~~i~~~l~~is~l~lllii~~~~~~n~~~i~~~~~~~i~~~~lll~~~~f  315 (406)
                      +..+     .-.++|+++|+++-..-|++.+...+-.+.+--+ +-+.+.  ...|-+++.+.....++ ..++..++..
T Consensus       168 ~~~l-----v~~llP~iiG~iLGNLD~~~r~fl~~~~~~lIPF-~~f~lG--a~inl~~i~~aGl~GIl-Lgv~~~~vtg  238 (314)
T PF03812_consen  168 WMSL-----VAALLPIIIGMILGNLDPDFRKFLAPGVPILIPF-FGFALG--AGINLSNIIKAGLSGIL-LGVIVVVVTG  238 (314)
T ss_pred             HHHH-----HHHHHHHHHHHHHhcCCHHHHHHHhcCCCeeeeh-hhhhhc--CCCCHHHHHHhCcchHH-HHHHHHHHHh
Confidence            6554     5788999999999999888877666554321111 111111  12355555553222222 2223233333


Q ss_pred             HHHHHHhcccCCCCCccceeeeeeecccccHHHHHHHHHHhcCCc-------ccHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 037575          316 AVGYWVSKIPSWRQGEEVSRTISLCTGMQSSTLAGLLATQFLGSS-------QAVPPACSVIAMAIMGLCLASFWGSGSR  388 (406)
Q Consensus       316 ~lG~~l~r~~~~~~~~~~~~a~~~~~g~rN~~Lai~lA~~~f~~~-------~alp~~~y~v~q~i~~~~la~~~~~~~~  388 (406)
                      ...|+.-|.  .+.++. ....+.++..-| +.+..-+...-+|.       +..=++...++..+...++.+||.||-+
T Consensus       239 ~~~~~~dr~--i~~~~g-~aG~A~sstAGn-avatPaaiA~~dP~~~~~~~~ATaQvAaavIvTail~P~lt~~~~kr~k  314 (314)
T PF03812_consen  239 IPLYLADRL--ILKGNG-VAGAAISSTAGN-AVATPAAIAAADPSFAPYAASATAQVAAAVIVTAILTPILTSWWAKRFK  314 (314)
T ss_pred             HHHHHHHHH--HcCCCC-ceeehHHhhhhh-hhhhhHHHHHhChhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            444555665  221222 223444444444 34444333333332       1122344567788888889999998753

There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane

>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter

Probab=98.05  E-value=0.00016  Score=70.51  Aligned_cols=284  Identities=13%  Similarity=0.190  Sum_probs=156.4

Q ss_pred             HHHHHHhHH----HHHHHHHHHHHhhccchhhHhh---h---hhHHHHHHHHHHHhcccCCHHHHHHHhcCchhHHHHHH
Q 037575           83 SSQVLSAML----PFVVALTAVAALAQPSTFTWVS---K---ELYAPALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFV  152 (406)
Q Consensus        83 ~~~~l~~~~----~~~~~~~~~lgl~~P~~~~~l~---~---~~~~~~l~~iMf~~Gl~l~~~~l~~~~~~p~~~~~~l~  152 (406)
                      +.++++|.+    .+=+.+++++.-.+|+.+...-   +   .-..+.+.+.+|++|.+++.++-.+.++|--.+   ++
T Consensus         3 i~~~i~kIPGG~MiVPLllga~inTf~P~~~~~~GgFTtalf~G~~~il~~~l~~~Ga~I~~k~~g~~l~kg~~l---~~   79 (314)
T TIGR00793         3 IKRSIEKIPGGMMLVPLFLGALCHTFAPGAGKYFGSFTNGLITGTVPILAVWFFCMGASIDLSATGTVLRKSGTL---VV   79 (314)
T ss_pred             hhhhhccCCCceeHHHHHHHHHHHhcCCchhhhcCchhHHHHcCcHHHHHHHHHHhCCeeeecccchhhhhccee---ee
Confidence            344555553    2224456677888898754411   1   123567778889999999999998888764322   24


Q ss_pred             HHHHHHHHHHHHHHHHcCCCh---HHHHHH---HHHhcCchhhHHHH---HHHHcCCChHHHHHHHHHHHHHHHHHHHHH
Q 037575          153 AQYIIKPILGVLIAKAFGIPQ---IFYAGF---VLTACVSGAQLSSY---ASFLSKGDVAVSILLSSSTTIASVLITPLL  223 (406)
Q Consensus       153 ~~~~l~Plla~~l~~~~~l~~---~~~~Gl---vL~a~~P~~~~s~v---~t~~~gGd~ala~~~~~~stlls~~~~Pl~  223 (406)
                      .|+++-=++++.++++++.+.   .+..|+   .+.+++--. ...+   ++..+|-+.+-. +..    ++++-.-|+.
T Consensus        80 ~K~~i~~~~g~~~~~~~g~~Gi~~g~~~GlS~LAiiaA~~ns-NggLY~aL~~qyGd~~D~g-A~~----i~sl~~GPf~  153 (314)
T TIGR00793        80 TKIAVAWVVAAIASRIIPEDGVEVGFFAGLSTLALVAAMDMT-NGGLYASIMQQYGTKEEAG-AFV----LMSLESGPLM  153 (314)
T ss_pred             HHHHHHHHHHHHHHHHcCcCCccccceeccHHHHHHHHHhCC-cHHHHHHHHHHcCCHhhhh-hhh----hhhhccCcHH
Confidence            588887788899999998765   222233   233333221 2223   355555444332 222    3344445666


Q ss_pred             HHHHhCC--ccccChHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHhHhcccchHHHHHHHHHHHHHHHhhhhHHhhhhhH
Q 037575          224 TGLLIGS--VIPVDAVAMSKSILQVVLVPVALGLGLNTYAKPVVSFLRPVMPFVAMICTSLCIGSPLAINRSQILSIEGL  301 (406)
Q Consensus       224 l~ll~g~--~v~vd~~~l~~~ll~~vllPl~lG~llr~~~p~~~~~i~~~l~~is~l~lllii~~~~~~n~~~i~~~~~~  301 (406)
                      ..+.+|.  ..++|+..+     .-.++|+++|+++-..-|++.+...+-.+.+--+ ..+-+.  ...|-+++.+. +.
T Consensus       154 TMi~LG~sGlA~ip~~~l-----v~~ilPlliG~ilGNLD~~~r~fl~~~~~~lIpF-f~FaLG--aginl~~i~~a-Gl  224 (314)
T TIGR00793       154 TMVILGTAGIASFEPHVF-----VGAVLPFLVGFALGNLDPELRDFFSKAVQTLIPF-FAFALG--NTIDLGVIIQT-GL  224 (314)
T ss_pred             HHHHHhhccCCCCCHHHH-----HHHHHHHHHHHHHhcCCHHHHHHhccCCCeeeeh-hhhhhc--CCCCHHHHHHh-Cc
Confidence            6666664  356776554     5788999999999999888877666554432111 011111  12355566553 22


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcccCCCCCccceeeeeeecccccHHHHHHHHHHhcCCc-------ccHHHHHHHHHHHH
Q 037575          302 QLVLPVLTFHAVAFAVGYWVSKIPSWRQGEEVSRTISLCTGMQSSTLAGLLATQFLGSS-------QAVPPACSVIAMAI  374 (406)
Q Consensus       302 ~i~~~~lll~~~~f~lG~~l~r~~~~~~~~~~~~a~~~~~g~rN~~Lai~lA~~~f~~~-------~alp~~~y~v~q~i  374 (406)
                      .=++..++..++.....|+.-|.  .+-++.. ...+..+..-| +.+..-+...-+|.       +..=++-..++..+
T Consensus       225 ~GIlLGl~v~~vtG~~~~~~dr~--~~g~~g~-aG~A~sstAGn-AvatPaavA~adPs~~~~a~~ATaqvAaavivTai  300 (314)
T TIGR00793       225 LGILLGVSVIILTGIPLILADKF--IGGGDGT-AGIAASSSAGA-AVATPVLIAEMVPAFKPVAPAATALVATSVIVTSL  300 (314)
T ss_pred             chHHHHHHHHHHHhHHHHHHHHH--hcCCCCc-hhhHHHHHHHH-hhhhHHHHHHhChhhhhhHHHHHHHHHHHHHHHHH
Confidence            21222233333444555666665  3211111 13333333344 33433333333332       11113345677888


Q ss_pred             HHHHHHHHHhcCcc
Q 037575          375 MGLCLASFWGSGSR  388 (406)
Q Consensus       375 ~~~~la~~~~~~~~  388 (406)
                      ...++.+||.||.+
T Consensus       301 L~Pilta~~~kr~~  314 (314)
T TIGR00793       301 LVPIATVWWSKKVK  314 (314)
T ss_pred             HHHHHHHHHHHhcC
Confidence            88899999998753

This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.

>PRK05274 2-keto-3-deoxygluconate permease; Provisional

Probab=97.86  E-value=0.0022  Score=64.05  Aligned_cols=287  Identities=16%  Similarity=0.235  Sum_probs=150.5

Q ss_pred             HHHHHHhHH----HHHHHHHHHHHhhccchhhH------hhhhhHHHHHHHHHHHhcccCCHHHHHHHhcCchhHHHHHH
Q 037575           83 SSQVLSAML----PFVVALTAVAALAQPSTFTW------VSKELYAPALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFV  152 (406)
Q Consensus        83 ~~~~l~~~~----~~~~~~~~~lgl~~P~~~~~------l~~~~~~~~l~~iMf~~Gl~l~~~~l~~~~~~p~~~~~~l~  152 (406)
                      +.++++|.+    .+=..++..+.-..|+....      +-+.-..+.+.+.++++|.+++.++....++|-..+   ++
T Consensus         5 ~~~~~~kiPgg~m~vpl~~g~~i~tf~P~~~~~g~fT~alf~~g~~~l~~~~~~~~ga~i~~~~~~~~l~~g~~l---~~   81 (326)
T PRK05274          5 IKRTIEKIPGGMMLVPLLLGALINTFAPGALYFGSFTNALFKTGAVPILAVFLFCMGASINLRATGTVLKKGGTL---LL   81 (326)
T ss_pred             HHHHhccCCcceeeHHHHHHHHHHHhCCcceeeCcchHHHHhcChHHHHHHHHHHcCCEEeccccchhhhhchhH---HH
Confidence            445555543    22244566677788874321      112234567778889999999999998887764333   23


Q ss_pred             HHHHHHHHHHHHHHHHcCCCh---HHHHHHHHHhcCchhhHHHHHHHHcCCChHHHHHHHH---------HHHHHHHHHH
Q 037575          153 AQYIIKPILGVLIAKAFGIPQ---IFYAGFVLTACVSGAQLSSYASFLSKGDVAVSILLSS---------STTIASVLIT  220 (406)
Q Consensus       153 ~~~~l~Plla~~l~~~~~l~~---~~~~GlvL~a~~P~~~~s~v~t~~~gGd~ala~~~~~---------~stlls~~~~  220 (406)
                      .++.+-=++++...++++.+.   ....|.--.+         ..+.+-+.|.++....+.         --.+++.-.-
T Consensus        82 ~k~~~~~~~~~~~~~~~g~~~i~~gl~~G~s~la---------~~a~l~~~N~~ly~~~~~~~g~~~d~ga~i~lsl~~G  152 (326)
T PRK05274         82 TKFAVAALVGVIAGKFIGEEGIRLGGFAGLSTLA---------IIAAMDNTNGGLYAALMGQYGTKEDAGAFVLMSLEDG  152 (326)
T ss_pred             HHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH---------HHHHhcCCCHHHHHHHHHHhCCCCCcchHHHHHHhhh
Confidence            466666666777777776533   2222221111         122222222222211110         0112233334


Q ss_pred             HHHHHHHhCC--ccccChHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHhHhcccchHHHHHHHHHHHHHHHhhhhHHhhh
Q 037575          221 PLLTGLLIGS--VIPVDAVAMSKSILQVVLVPVALGLGLNTYAKPVVSFLRPVMPFVAMICTSLCIGSPLAINRSQILSI  298 (406)
Q Consensus       221 Pl~l~ll~g~--~v~vd~~~l~~~ll~~vllPl~lG~llr~~~p~~~~~i~~~l~~is~l~lllii~~~~~~n~~~i~~~  298 (406)
                      |....++.+.  ..+++..++.     -+++|+++|+.++.+.+.+.+...+-.+.+--+....   .-...|.+++...
T Consensus       153 p~~tM~lL~aagla~~p~~~li-----~allplliG~~lgnl~~~l~~~~~~Gi~~lLp~~~~~---lG~~l~lq~i~~~  224 (326)
T PRK05274        153 PFMTMLALGAAGLASFPPPALV-----GAVLPLLVGFILGNLDPELRQFLGKAVPVLIPFFAFA---LGNGIDLGTIITA  224 (326)
T ss_pred             HHHHHHHHHhhCcccCCCchhh-----HHHHHHHHHHHHHhHHHhhHHHhcCCcEEEHHHHHHH---HhcceeHhHHHhc
Confidence            5554455443  2345544443     2239999999999987777777666655411111111   1112244444442


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccceeeeeeecccccHHH-HHHHHH--HhcCC---cccHHHHHHHHHH
Q 037575          299 EGLQLVLPVLTFHAVAFAVGYWVSKIPSWRQGEEVSRTISLCTGMQSSTL-AGLLAT--QFLGS---SQAVPPACSVIAM  372 (406)
Q Consensus       299 ~~~~i~~~~lll~~~~f~lG~~l~r~~~~~~~~~~~~a~~~~~g~rN~~L-ai~lA~--~~f~~---~~alp~~~y~v~q  372 (406)
                       ++.-++..+..++.....+|+..|+  ++.+++ ....+..++..|... +.+++.  ..+.+   .++.-++.-.+..
T Consensus       225 -G~~GilL~~~~~~~t~~~~~~~~Rl--~~~~~g-~~g~a~~ttaG~aic~pAAvaa~~p~~~~~~~~at~~VA~~vivt  300 (326)
T PRK05274        225 -GLSGILLGVAVVAVTGIPLYLADRL--IGGGNG-VAGAAAGSTAGNAVATPAAVAAADPSFAPFAPAATAQVAAAVIVT  300 (326)
T ss_pred             -CCcchhhhhhHhhccchhhHhHhhe--eecCCC-cchHHHHHHHHHHHHHHHHHHhhccccccchHhHHHHHHHHHHHH
Confidence             3433444555556667778899998  543333 223445555566422 122221  12222   2334444445577


Q ss_pred             HHHHHHHHHHHhcCccccchh
Q 037575          373 AIMGLCLASFWGSGSRIRDLT  393 (406)
Q Consensus       373 ~i~~~~la~~~~~~~~~~~~~  393 (406)
                      .+...++.++|.||.++++..
T Consensus       301 ~il~P~l~~~~~k~~~~~~~~  321 (326)
T PRK05274        301 AILAPILTAWWSKRVGKRAAE  321 (326)
T ss_pred             HHHHHHHHHHHHHHhhccccc
Confidence            778888888999888876653

>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase

Probab=97.77  E-value=0.026  Score=56.32  Aligned_cols=105  Identities=19%  Similarity=0.187  Sum_probs=85.2

Q ss_pred             HHHHHHhcccCCHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhcCchhhHHH-HHHHHcCC
Q 037575          122 GGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVLIAKAFGIPQIFYAGFVLTACVSGAQLSS-YASFLSKG  200 (406)
Q Consensus       122 ~~iMf~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~~l~Plla~~l~~~~~l~~~~~~GlvL~a~~P~~~~s~-v~t~~~gG  200 (406)
                      .++=..+|.+++.+.+.+...++.......+...+..-..++.+.+.-+.|..    --+.+++|+|.+.. ++++..|+
T Consensus        32 ~ilG~~iG~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~~d~~----TA~~~~~PGg~s~m~~la~~~ga  107 (318)
T PF05145_consen   32 AILGVSIGSSFTPEVLAQLASWWPPMLLLLVVTLLLSLVGAWLLRRISGLDRA----TAFFASMPGGLSEMVALAEEYGA  107 (318)
T ss_pred             HHHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChh----HHHHHcCCccHHHHHHHHHHcCC
Confidence            34447889999999999888777776666666666666777888888777754    34689999998766 59999999


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 037575          201 DVAVSILLSSSTTIASVLITPLLTGLLIGS  230 (406)
Q Consensus       201 d~ala~~~~~~stlls~~~~Pl~l~ll~g~  230 (406)
                      |...-+....+=-++-++++|+...+..+.
T Consensus       108 d~~~Va~~q~lRl~~Vv~~vP~i~~~~~~~  137 (318)
T PF05145_consen  108 DTRRVALVQSLRLLLVVLLVPFIASLLGGG  137 (318)
T ss_pred             ChhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            999999999999999999999999887763

The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.

>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]

Probab=97.70  E-value=0.024  Score=56.87  Aligned_cols=100  Identities=17%  Similarity=0.190  Sum_probs=84.3

Q ss_pred             HHhcccCCHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhcCchhhHHH-HHHHHcCCChHH
Q 037575          126 LSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVLIAKAFGIPQIFYAGFVLTACVSGAQLSS-YASFLSKGDVAV  204 (406)
Q Consensus       126 f~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~~l~Plla~~l~~~~~l~~~~~~GlvL~a~~P~~~~s~-v~t~~~gGd~al  204 (406)
                      ..+|.+++.+++.+..+++......++......=+.+|.+.+.-..|...    -..+++|+|.+.. .+++-+|.|.+.
T Consensus        69 ~~ig~~~t~s~l~~l~~~w~~~~~v~~~tl~~s~l~g~ll~r~~~~~~~T----a~~gs~PGgas~m~~iA~d~gAd~~~  144 (352)
T COG3180          69 IMIGASLTPSVLDTLKSNWPIVLVVLLLTLLSSILLGWLLKRFSILPGNT----AFLGSSPGGASAMVSIAQDYGADLRL  144 (352)
T ss_pred             HHHhhhcCHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHhcCCCcch----hhHhcCCchHHHHHHHHHHhCCChhH
Confidence            56789999999999988888777777777777777888888766566543    3578999998777 499999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhC
Q 037575          205 SILLSSSTTIASVLITPLLTGLLIG  229 (406)
Q Consensus       205 a~~~~~~stlls~~~~Pl~l~ll~g  229 (406)
                      .+.+..+=-+.-..+.|+..++..+
T Consensus       145 VAl~Q~lRvl~Vvl~vplv~~~~~~  169 (352)
T COG3180         145 VALMQYLRVLFVVLLAPLVSRLFVG  169 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999885

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=97.10  E-value=0.25  Score=53.86  Aligned_cols=98  Identities=14%  Similarity=0.019  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHhcccCCHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHcCCChHH--HHHHHHHhcCchhhHHHHH
Q 037575          117 YAPALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVLIAKAFGIPQIF--YAGFVLTACVSGAQLSSYA  194 (406)
Q Consensus       117 ~~~~l~~iMf~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~~l~Plla~~l~~~~~l~~~~--~~GlvL~a~~P~~~~s~v~  194 (406)
                      ....+.++||.+|+.++++++++..|+  .+..+ ..|.++.-.+.+.++..++.+...  ..|..+..+ .++....++
T Consensus        60 aelGvv~LlF~iGLEl~~~~l~~~~~~--~~~~g-~~qv~~~~~~~~~~~~~~g~~~~~al~ig~~la~S-Staiv~~~L  135 (621)
T PRK03562         60 AEFGVVLMLFVIGLELDPQRLWKLRRS--IFGGG-ALQMVACGGLLGLFCMLLGLRWQVALLIGLGLALS-STAIAMQAM  135 (621)
T ss_pred             HHHHHHHHHHHHHhCcCHHHHHHHHHH--HHHHH-HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-HHHHHHHHH
Confidence            345677888999999999999866432  23333 335544444455566677765433  233333332 334444455


Q ss_pred             HHHcCCChH---HHHHHHHHHHHHHHH
Q 037575          195 SFLSKGDVA---VSILLSSSTTIASVL  218 (406)
Q Consensus       195 t~~~gGd~a---la~~~~~~stlls~~  218 (406)
                      .++-.-+..   .+.....+.-++++.
T Consensus       136 ~e~~~l~t~~G~~~l~~ll~~Dl~~i~  162 (621)
T PRK03562        136 NERNLMVTQMGRSAFAILLFQDIAAIP  162 (621)
T ss_pred             HHhccccCchHHHHHHHHHHHHHHHHH
Confidence            554332332   444455555554443

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=96.90  E-value=0.66  Score=50.38  Aligned_cols=97  Identities=13%  Similarity=0.026  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHhcccCCHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHcCCChHH--HHHHHHHhcCchhhHHHHH
Q 037575          117 YAPALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVLIAKAFGIPQIF--YAGFVLTACVSGAQLSSYA  194 (406)
Q Consensus       117 ~~~~l~~iMf~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~~l~Plla~~l~~~~~l~~~~--~~GlvL~a~~P~~~~s~v~  194 (406)
                      ....+.++||..|+.++++++++..|  +....+ ..|.++.-++..++...++.+...  ..|+. .+.+.++....++
T Consensus        60 aelGvv~LLF~iGLel~~~~l~~~~~--~~~~~g-~~~v~~t~~~~~~~~~~~g~~~~~a~~~g~~-la~SSTaiv~~iL  135 (601)
T PRK03659         60 SELGVVFLMFIIGLELNPSKLWQLRR--SIFGVG-AAQVLLSAAVLAGLLMLTDFSWQAAVVGGIG-LAMSSTAMALQLM  135 (601)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHH--HHHHHH-HHHHHHHHHHHHHHHHHHccCHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            34677788999999999999986543  223323 334444333344455556665432  23322 2333444444555


Q ss_pred             HHHcCCCh---HHHHHHHHHHHHHHH
Q 037575          195 SFLSKGDV---AVSILLSSSTTIASV  217 (406)
Q Consensus       195 t~~~gGd~---ala~~~~~~stlls~  217 (406)
                      .++-.-+.   .++.....+.-+.++
T Consensus       136 ~e~~~~~t~~G~~~l~vll~~Di~~i  161 (601)
T PRK03659        136 REKGMNRSESGQLGFSVLLFQDLAVI  161 (601)
T ss_pred             HHcccccCchHHHHHHHHHHHHHHHH
Confidence            55543333   234444444554433

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=96.73  E-value=0.96  Score=48.54  Aligned_cols=102  Identities=21%  Similarity=0.242  Sum_probs=54.7

Q ss_pred             hHHHHHHHHHHHhcccCCHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhcCc---hhhHHH
Q 037575          116 LYAPALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVLIAKAFGIPQIFYAGFVLTACVS---GAQLSS  192 (406)
Q Consensus       116 ~~~~~l~~iMf~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~~l~Plla~~l~~~~~l~~~~~~GlvL~a~~P---~~~~s~  192 (406)
                      +....+.++||..|+.++++++++..   +....+...+.++.-++++++.+.++.+...  ++++-.+..   ++....
T Consensus        60 la~lGli~llF~~Gle~d~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--al~lg~~ls~tS~~vv~~  134 (558)
T PRK10669         60 LAELGVILLMFGVGLHFSLKDLMAVK---SIAIPGAIAQIAVATLLGMALSAVLGWSLMT--GIVFGLCLSTASTVVLLR  134 (558)
T ss_pred             HHHHHHHHHHHHhHhcCCHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH--HHHHHHHHHHHHHHHHHH
Confidence            34567788999999999999998652   2333344445555545566666677765432  232222222   222222


Q ss_pred             HHHHHcCCCh---HHHHHHHHHHHHHHHHHHHH
Q 037575          193 YASFLSKGDV---AVSILLSSSTTIASVLITPL  222 (406)
Q Consensus       193 v~t~~~gGd~---ala~~~~~~stlls~~~~Pl  222 (406)
                      ++.++-.-|.   .++.....+.-+++.+.+-+
T Consensus       135 ~L~e~~~l~s~~G~~~l~~~~~~Dl~~i~~l~~  167 (558)
T PRK10669        135 ALEERQLIDSQRGQIAIGWLIVEDLVMVLTLVL  167 (558)
T ss_pred             HHHhcCcccCcchHHHHHHHHHHHHHHHHHHHH
Confidence            3333222222   34555556666666554443

>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea

Probab=96.68  E-value=0.05  Score=55.13  Aligned_cols=123  Identities=15%  Similarity=0.186  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHHHHhh--hHh-HHHhHhcccchHHHHHHHHHHHHHHHhh--hhHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 037575          245 QVVLVPVALGLGLNTY--AKP-VVSFLRPVMPFVAMICTSLCIGSPLAIN--RSQILSIEGLQLVLPVLTFHAVAFAVGY  319 (406)
Q Consensus       245 ~~vllPl~lG~llr~~--~p~-~~~~i~~~l~~is~l~lllii~~~~~~n--~~~i~~~~~~~i~~~~lll~~~~f~lG~  319 (406)
                      .-+++=+.+|.+++++  +++ ..+.+.+.   .-.+++=..++..++.+  .+.+.+  .+.+.+...+...+++.+++
T Consensus         7 ~~i~~ii~~G~~~~~~~~l~~~~~~~ls~l---v~~~~lP~liF~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~   81 (385)
T PF03547_consen    7 LPIFLIILLGYLLGRFGILDPEASKGLSKL---VFNVFLPALIFSSIANTDTLEDLLS--LWFIPVFAFIIFILGLLLGF   81 (385)
T ss_pred             HHHHHHHHHHHHHHHhCCCCHHHHHHHHHH---HHHHHHHHHHHHHHHhccchhhhhh--hHHHHHHHHHHHHHHHHHHH
Confidence            4556667788888875  221 12222222   22233333333333332  122222  33444555666778888999


Q ss_pred             HHhcccCCCCCccceeeeeeecccccH-HHHHHHHHHhcCCcccHHHHHHHHHHHH
Q 037575          320 WVSKIPSWRQGEEVSRTISLCTGMQSS-TLAGLLATQFLGSSQAVPPACSVIAMAI  374 (406)
Q Consensus       320 ~l~r~~~~~~~~~~~~a~~~~~g~rN~-~Lai~lA~~~f~~~~alp~~~y~v~q~i  374 (406)
                      .+.|.  ++.+++.+.....+++..|. .+++.+....+++....-..+|.+.+.+
T Consensus        82 ~~~~~--~~~~~~~~~~~~~~~~~~N~~~lglpi~~~l~g~~~~~~~~~~~~~~~i  135 (385)
T PF03547_consen   82 LLSRL--FRLPKEWRGVFVLAASFGNTGFLGLPILQALFGERGVAYAIIFDVVNNI  135 (385)
T ss_pred             HHHHh--cCCCcccceEEEecccCCcchhhHHHHHHHHhcchhhhhehHHHHhhHH
Confidence            99987  67788888888888899997 6689999999987654444444444444

Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane

>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]

Probab=96.59  E-value=1.1  Score=46.17  Aligned_cols=116  Identities=20%  Similarity=0.239  Sum_probs=65.5

Q ss_pred             hHHHHHHHHHHHhcccCCHHHHHHHhcCchhHHHHHHHHHHHHHH-HHHHHHH-HcCCChH--HHHHHHHHhcCchhhHH
Q 037575          116 LYAPALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPI-LGVLIAK-AFGIPQI--FYAGFVLTACVSGAQLS  191 (406)
Q Consensus       116 ~~~~~l~~iMf~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~~l~Pl-la~~l~~-~~~l~~~--~~~GlvL~a~~P~~~~s  191 (406)
                      .....+..+||..|+..+++++++..|+.   ..+...--+..|. ++..... .++.+..  +..|..+ +...++..+
T Consensus        61 laelGvi~LlF~~GLE~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~al~lg~~l-~~sS~~i~~  136 (397)
T COG0475          61 LAELGVVFLLFLIGLEFDLERLKKVGRSV---GLGVAQVGLTAPFLLGLLLLLGILGLSLIAALFLGAAL-ALSSTAIVL  136 (397)
T ss_pred             HHHHhHHHHHHHHHHCcCHHHHHHhchhh---hhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHH-HHHHHHHHH
Confidence            34567788999999999999999776542   2222223345553 3322222 3555543  3333333 333344455


Q ss_pred             HHHHHHcCCCh---HHHHHHHHHHHHHHHHHHHHHHHHHhCCccccC
Q 037575          192 SYASFLSKGDV---AVSILLSSSTTIASVLITPLLTGLLIGSVIPVD  235 (406)
Q Consensus       192 ~v~t~~~gGd~---ala~~~~~~stlls~~~~Pl~l~ll~g~~v~vd  235 (406)
                      .++.++-+-+.   +......++.-+.+...+.+...+..+...+.+
T Consensus       137 ~iL~e~~~~~~~~g~~~l~~~i~~Di~~i~lLai~~~l~~~g~~~~~  183 (397)
T COG0475         137 KILMELGLLKTREGQLILGALVFDDIAAILLLAIVPALAGGGSGSVG  183 (397)
T ss_pred             HHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCccHh
Confidence            56666443333   355666667777777777776665544344333

>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication

Probab=96.58  E-value=0.16  Score=45.44  Aligned_cols=105  Identities=23%  Similarity=0.182  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHhcccCCHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhcCchhhHHH-HHHH
Q 037575          118 APALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVLIAKAFGIPQIFYAGFVLTACVSGAQLSS-YASF  196 (406)
Q Consensus       118 ~~~l~~iMf~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~~l~Plla~~l~~~~~l~~~~~~GlvL~a~~P~~~~s~-v~t~  196 (406)
                      ..+..++-..+|++++.+++++..+.....+...+...+..=..++.+.+..+.|...    .+.+++|+|.... .+++
T Consensus        50 ~~~qviiG~~iG~~f~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~t----a~La~~PGGl~~m~~~A~  125 (156)
T TIGR03082        50 ALAQVVIGILIGSRFTREVLAELKRLWPAALLSTVLLLALSALLAWLLARLTGVDPLT----AFLATSPGGASEMAALAA  125 (156)
T ss_pred             HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH----HHHHhCCchHHHHHHHHH
Confidence            3444556678899999999999887766655555555555445567777777877643    3678999998766 5889


Q ss_pred             HcCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 037575          197 LSKGDVAVSILLSSSTTIASVLITPLLTGL  226 (406)
Q Consensus       197 ~~gGd~ala~~~~~~stlls~~~~Pl~l~l  226 (406)
                      ..|.|...-+....+=.++-.++.|++..+
T Consensus       126 ~~gad~~~V~~~q~~Rl~~v~~~~P~i~~~  155 (156)
T TIGR03082       126 ELGADVAFVAAMQTLRLLFVVLLVPLLARL  155 (156)
T ss_pred             HhCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999988888888889987653

The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra

>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins

Probab=96.23  E-value=0.77  Score=45.64  Aligned_cols=134  Identities=17%  Similarity=0.112  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHHHh---hccchhhHhhhhhHHHHHHHHHHHhcccCCHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH-
Q 037575           91 LPFVVALTAVAAL---AQPSTFTWVSKELYAPALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVLIA-  166 (406)
Q Consensus        91 ~~~~~~~~~~lgl---~~P~~~~~l~~~~~~~~l~~iMf~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~~l~Plla~~l~-  166 (406)
                      +.+.++++.+++-   -.|+..+.-.+......+-.-...+|.++++.|+.+.-.+.  +.... +.....=.+++.++ 
T Consensus        29 ~~~AillG~~i~n~~~~~~~~~~~Gi~~~~k~~Lr~gIVLlG~~l~~~~i~~~G~~~--~~~~~-~~v~~~~~~~~~lg~  105 (305)
T PF03601_consen   29 LLIAILLGMLIGNLFFGLPARFKPGIKFSSKKLLRLGIVLLGFRLSFSDILALGWKG--LLIII-IVVILTFLLTYWLGR  105 (305)
T ss_pred             HHHHHHHHHHHhhhccCCcHHHHhHHHHHHHHHHHHHHHHHCccccHHHHHHhCccH--HHHHH-HHHHHHHHHHHHHHH
Confidence            3455556666662   22333322211112344556667789999999999775432  33222 23333335566677 


Q ss_pred             HHcCCChHHHHHHHHHhcCchhhHHHH----HHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037575          167 KAFGIPQIFYAGFVLTACVSGAQLSSY----ASFLSKGDVAVSILLSSSTTIASVLITPLLTGLLI  228 (406)
Q Consensus       167 ~~~~l~~~~~~GlvL~a~~P~~~~s~v----~t~~~gGd~ala~~~~~~stlls~~~~Pl~l~ll~  228 (406)
                      +.+++|++.. -++-.+..=||.++..    ..+--+-|.++++..+.+-+.++++..|...+.+.
T Consensus       106 r~~~l~~~~~-~Lia~GtsICG~SAi~A~a~~i~a~~~~~a~ava~V~lfg~vam~~~P~l~~~l~  170 (305)
T PF03601_consen  106 RLFGLDRKLA-ILIAAGTSICGASAIAATAPVIKAKEEDVAYAVATVFLFGTVAMFLYPLLGHALG  170 (305)
T ss_pred             HHhCCCHHHH-HHHHhhcccchHHHHHHHcccccCCCCceeeeehHHHHHHHHHHHHHHHHHHHhC
Confidence            9999988643 2222333334433332    22233568899999999999999999999987753

; GO: 0016021 integral to membrane

>PRK12460 2-keto-3-deoxygluconate permease; Provisional

Probab=95.79  E-value=0.1  Score=51.62  Aligned_cols=164  Identities=15%  Similarity=0.185  Sum_probs=84.3

Q ss_pred             cCCccccchheeeccccccC---------CcccccccHHHHHHhHHHHHHHHHHHHHhhccchhhHhhhhhHHHHHHHHH
Q 037575           55 RVGLQRREGNVSLLSFGINA---------GSVVARYDSSQVLSAMLPFVVALTAVAALAQPSTFTWVSKELYAPALGGIM  125 (406)
Q Consensus        55 ~~g~~~~~~~~~~~~f~~~~---------~~~~~~~~~~~~l~~~~~~~~~~~~~lgl~~P~~~~~l~~~~~~~~l~~iM  125 (406)
                      .|||..-.+++.+.+...-|         ..-.+- ....++.  ..+-++++.++|-..++.-+.+ ++-....+.+..
T Consensus       127 ~yG~~~d~gA~~~~sl~~GPf~tm~aLga~gLA~i-p~~~lv~--lilpILiGmilGNld~~~~~~l-~~Gi~f~I~f~~  202 (312)
T PRK12460        127 EFGDERDVGAISILSLNDGPFFTMLALGAAGLANI-PIMALVA--ALLPLVLGMILGNLDPDMRKFL-TKGGPLLIPFFA  202 (312)
T ss_pred             HcCCHhhhhHHhhhhhccCcHHHHHHHHHHHHhcC-ChHHHHH--HHHHHHHHHHHhccchhhHHHH-hccceEeHHHHH
Confidence            48998888888776666666         000000 0111111  2233333444444444322222 232344555666


Q ss_pred             HHhcccCCHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhcCc---hhhHHHH-HHHHcCCC
Q 037575          126 LSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVLIAKAFGIPQIFYAGFVLTACVS---GAQLSSY-ASFLSKGD  201 (406)
Q Consensus       126 f~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~~l~Plla~~l~~~~~l~~~~~~GlvL~a~~P---~~~~s~v-~t~~~gGd  201 (406)
                      |.+|.+++++++.+.-  +..++.++++ .++.=.+.+.+.+.++.|...  |..+-.++-   |++++.. ..-..+..
T Consensus       203 f~LG~~lnl~~I~~~G--~~GIlL~v~v-v~~t~~~~~~i~rllg~~~~~--g~li~stAGnAIcgpAAVaAadP~~~~~  277 (312)
T PRK12460        203 FALGAGINLSMLLQAG--LAGILLGVLV-TIVTGFFNIFADRLVGGTGIA--GAAASSTAGNAVATPLAIAAADPSLAPV  277 (312)
T ss_pred             HHhcCCeeHHHHHHhC--hHHHHHHHHH-HHHHHHHHHHHHHHhCCChhH--HHHHHHHhhHHHHHHHHHHHhchhHHHH
Confidence            8899999999998764  2334444443 334445566777888877654  333321111   1111111 22223345


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037575          202 VAVSILLSSSTTIASVLITPLLTGLL  227 (406)
Q Consensus       202 ~ala~~~~~~stlls~~~~Pl~l~ll  227 (406)
                      ++.+...+..+.+++.++.|++..++
T Consensus       278 ~~~Ataqvaa~vivTail~P~~t~~~  303 (312)
T PRK12460        278 AAAATAQVAASVIVTAILTPLLTSWV  303 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55666666666666666666666554

>PLN03159 cation/H(+) antiporter 15; Provisional

Probab=95.52  E-value=5.7  Score=44.92  Aligned_cols=106  Identities=12%  Similarity=0.218  Sum_probs=55.2

Q ss_pred             hHHHHHHHHHHHhcccCCHHHHHHHhcCchhHHHHHHHHHHHHHHH-HHHHHHHcCCC---h-H----HHHHHHHHhcCc
Q 037575          116 LYAPALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPIL-GVLIAKAFGIP---Q-I----FYAGFVLTACVS  186 (406)
Q Consensus       116 ~~~~~l~~iMf~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~~l~Pll-a~~l~~~~~l~---~-~----~~~GlvL~a~~P  186 (406)
                      +....+.++||..|+.++++.+++..|+  .+..++. . ++.|++ +++++..++..   . .    +..|+.+. ...
T Consensus       107 la~lGlillmFliGLE~Dl~~lr~~~k~--a~~ia~~-~-~ilpf~lg~~~~~~l~~~~~~~~~~~~~l~~g~alS-~Ts  181 (832)
T PLN03159        107 MANLGLLYFLFLVGVEMDISVIRRTGKK--ALAIAIA-G-MALPFCIGLAFSFIFHQVSRNVHQGTFILFLGVALS-VTA  181 (832)
T ss_pred             HHHHHHHHHHHHHHHcCcHHHHHhcchH--HHHHHHH-H-HHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHH-Hhh
Confidence            3456777889999999999999866443  3333322 2 344554 34444433211   1 1    11222221 111


Q ss_pred             hhhHHHHHHHHc--CCCh-HHHHHHHHHHHHHHHHHHHHHHHH
Q 037575          187 GAQLSSYASFLS--KGDV-AVSILLSSSTTIASVLITPLLTGL  226 (406)
Q Consensus       187 ~~~~s~v~t~~~--gGd~-ala~~~~~~stlls~~~~Pl~l~l  226 (406)
                      .++.+.++.++-  +-+. .+++...+++-+++.+.+-+...+
T Consensus       182 ~pVv~riL~Elkll~s~~GrlaLsaavv~Dl~~~ilLav~~~l  224 (832)
T PLN03159        182 FPVLARILAEIKLINTELGRIAMSAALVNDMCAWILLALAIAL  224 (832)
T ss_pred             HHHHHHHHHHcCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            122333444433  2222 456677777888887777665443

>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance []

Probab=95.37  E-value=0.55  Score=44.35  Aligned_cols=91  Identities=19%  Similarity=0.223  Sum_probs=69.7

Q ss_pred             HHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhcCchhhHHHHHHHHcCCChHHHHHHHHHHHH
Q 037575          135 EDFALAFKRPLPLSVGFVAQYIIKPILGVLIAKAFGIPQIFYAGFVLTACVSGAQLSSYASFLSKGDVAVSILLSSSTTI  214 (406)
Q Consensus       135 ~~l~~~~~~p~~~~~~l~~~~~l~Plla~~l~~~~~l~~~~~~GlvL~a~~P~~~~s~v~t~~~gGd~ala~~~~~~stl  214 (406)
                      ++.+...||.+.++.++.+--++--...+.+++.++++++....+.-=+  =+.+.+.-.++..|||.++.+..++++-+
T Consensus        68 ~~~~~l~~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~~~~Sl~pkS--VTtpiAi~is~~iGG~~sLta~~VvitGi  145 (215)
T PF04172_consen   68 RQRRLLKKNWIPILVGVLVGSLVSIFSAVLLARLLGLSPEIILSLAPKS--VTTPIAIEISEQIGGIPSLTAVFVVITGI  145 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH--hhHHHHHHHHHHhCChHHHHHHHHHHHhh
Confidence            3444555666778888777777766778888999999998766654322  12333445999999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 037575          215 ASVLITPLLTGLL  227 (406)
Q Consensus       215 ls~~~~Pl~l~ll  227 (406)
                      ++.+.-|.++.++
T Consensus       146 ~Ga~~g~~llk~~  158 (215)
T PF04172_consen  146 LGAVLGPPLLKLL  158 (215)
T ss_pred             HHHHhHHHHHhHc
Confidence            9999999988875

>TIGR00659 conserved hypothetical protein TIGR00659

Probab=95.32  E-value=0.52  Score=44.74  Aligned_cols=91  Identities=15%  Similarity=0.165  Sum_probs=67.8

Q ss_pred             HHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhcCchhhHHHHHHHHcCCChHHHHHHHHHHHH
Q 037575          135 EDFALAFKRPLPLSVGFVAQYIIKPILGVLIAKAFGIPQIFYAGFVLTACVSGAQLSSYASFLSKGDVAVSILLSSSTTI  214 (406)
Q Consensus       135 ~~l~~~~~~p~~~~~~l~~~~~l~Plla~~l~~~~~l~~~~~~GlvL~a~~P~~~~s~v~t~~~gGd~ala~~~~~~stl  214 (406)
                      ++.+...||.+.+..++.+--++--..++.+++.+|.+++....+.-=+  =+++.+.-.++..|||.++++..++++-+
T Consensus        78 ~~~~~lk~~~~~Il~~~~~G~~~~~~s~~~la~~lg~~~~i~~Sl~pkS--vTtpiAm~vs~~iGG~~sLta~~vvitGi  155 (226)
T TIGR00659        78 KQLPQIKKYWKEIILNVAVGSVIAIISGTLLALLLGLGPEIIASLLPKS--VTTPIAMHVSEMIGGIPAVTAVFVILTGL  155 (226)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHhhhHH--hhHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence            4444445666777777776666666778889999999988765443211  12333445899999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 037575          215 ASVLITPLLTGLL  227 (406)
Q Consensus       215 ls~~~~Pl~l~ll  227 (406)
                      ++.+.-|.++.++
T Consensus       156 ~Ga~~g~~ll~~~  168 (226)
T TIGR00659       156 LGTVFGPMVLRYF  168 (226)
T ss_pred             HHHHHHHHHHHHc
Confidence            9999999988876

Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.

>PRK05326 potassium/proton antiporter; Reviewed

Probab=95.26  E-value=5.3  Score=42.94  Aligned_cols=146  Identities=20%  Similarity=0.148  Sum_probs=68.6

Q ss_pred             hhHHHHHHHHHHHhcccCCHHHHHHHhcCchhHHHHHHHHHHHHHHHH--HHHHHHcCCChHHHHHHHHHhcCchhhHHH
Q 037575          115 ELYAPALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILG--VLIAKAFGIPQIFYAGFVLTACVSGAQLSS  192 (406)
Q Consensus       115 ~~~~~~l~~iMf~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~~l~Plla--~~l~~~~~l~~~~~~GlvL~a~~P~~~~s~  192 (406)
                      ......+.++||..|++++++++++..+..  +..+.+  -++.|...  +...+.++.+.  ..++++-++.-.+..+.
T Consensus        61 ~i~~l~L~~iLF~~Gl~~~~~~l~~~~~~~--~~la~~--gv~~t~~~~g~~~~~l~g~~~--~~alllgai~s~Td~a~  134 (562)
T PRK05326         61 LVGNLALAVILFDGGLRTRWSSFRPALGPA--LSLATL--GVLITAGLTGLFAHWLLGLDW--LEGLLLGAIVGSTDAAA  134 (562)
T ss_pred             HHHHHHHHHHHHcCccCCCHHHHHHHHHHH--HHHHHH--HHHHHHHHHHHHHHHHhcCCH--HHHHHHhhhhccCchHH
Confidence            344677888999999999999999776542  222222  12233332  33334566643  33444333322222222


Q ss_pred             HHHHH--cC--CChHHHHHH---HHHHHHHHHHHHHHHHHHHhCCccccChHHHHHHHHHHHHHHHHHHHHHHhhhHhHH
Q 037575          193 YASFL--SK--GDVAVSILL---SSSTTIASVLITPLLTGLLIGSVIPVDAVAMSKSILQVVLVPVALGLGLNTYAKPVV  265 (406)
Q Consensus       193 v~t~~--~g--Gd~ala~~~---~~~stlls~~~~Pl~l~ll~g~~v~vd~~~l~~~ll~~vllPl~lG~llr~~~p~~~  265 (406)
                      +..-+  .|  -+..+...+   ..++..++++.+=+.+.+..+...+.+. .....++..+.+-+++|...++......
T Consensus       135 v~~iL~~~~l~l~~~v~~~l~~eS~~nD~~ai~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~G~~~g~l~~~l~  213 (562)
T PRK05326        135 VFSLLRGKGLNLKERVASTLEIESGSNDPMAVFLTITLIELITGGETGLSW-GFLLLFLQQFGLGALIGLLGGWLLVQLL  213 (562)
T ss_pred             HHHHHhccCCCcchhHHhHhhhhhhcccHHHHHHHHHHHHHHhCCCCcchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22222  22  233333222   2233455555444444444333322222 2233344455555566665555544444


Q ss_pred             Hh
Q 037575          266 SF  267 (406)
Q Consensus       266 ~~  267 (406)
                      ++
T Consensus       214 ~~  215 (562)
T PRK05326        214 NR  215 (562)
T ss_pred             Hh
Confidence            43

>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family

Probab=94.74  E-value=4.2  Score=39.15  Aligned_cols=146  Identities=22%  Similarity=0.233  Sum_probs=75.8

Q ss_pred             hhHHHHHHHHHHHhcccCCHHHHHHHhcCchhHHHHHHHHHHHHHHH--HHHHHHHcCCChHH--HHHHHHHhcCchhhH
Q 037575          115 ELYAPALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPIL--GVLIAKAFGIPQIF--YAGFVLTACVSGAQL  190 (406)
Q Consensus       115 ~~~~~~l~~iMf~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~~l~Pll--a~~l~~~~~l~~~~--~~GlvL~a~~P~~~~  190 (406)
                      ......+..+||..|++++++++++..|+.  ...+ .. -.+.|..  ++...+.++.+...  ..|..+....|+ +.
T Consensus        45 ~l~~igl~~llF~~Gl~~d~~~l~~~~~~~--~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~ls~Ts~~-v~  119 (273)
T TIGR00932        45 HLAEFGVILLMFLIGLELDLERLWKLRKAA--FGVG-VL-QVLVPGVLLGLLLGHLLGLALGAAVVIGIILALSSTA-VV  119 (273)
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHH--HHHH-HH-HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhHHH-HH
Confidence            334567788899999999999999776543  2222 22 3344532  33345566655432  233333322222 22


Q ss_pred             HHHHHHHc--CCCh-HHHHHHHHHHHHHHHHHHHHHHHHHhCCccccChHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHh
Q 037575          191 SSYASFLS--KGDV-AVSILLSSSTTIASVLITPLLTGLLIGSVIPVDAVAMSKSILQVVLVPVALGLGLNTYAKPVVSF  267 (406)
Q Consensus       191 s~v~t~~~--gGd~-ala~~~~~~stlls~~~~Pl~l~ll~g~~v~vd~~~l~~~ll~~vllPl~lG~llr~~~p~~~~~  267 (406)
                      ..++.++-  +.+. .+......++-+++.+.+-+......+..  .+.......+...+..-+..+.+.|+..+...++
T Consensus       120 ~~il~~~~~~~~~~g~l~l~~~~~~D~~~i~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (273)
T TIGR00932       120 VQVLKERGLLKTPFGQTVLGILLFQDIAVVPLLALLPLLATSAS--TEHVALALLLLKVFLAFLLLVLLGRWLLRPVLRL  197 (273)
T ss_pred             HHHHHHcCcccChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            23344332  3332 35566677888888888777665543221  2222333333333444445566666655544333

>PRK04288 antiholin-like protein LrgB; Provisional

Probab=94.74  E-value=1  Score=42.90  Aligned_cols=89  Identities=12%  Similarity=0.042  Sum_probs=67.7

Q ss_pred             HHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhcCchhhHHHHHHHHcCCChHHHHHHHHHHHHHH
Q 037575          137 FALAFKRPLPLSVGFVAQYIIKPILGVLIAKAFGIPQIFYAGFVLTACVSGAQLSSYASFLSKGDVAVSILLSSSTTIAS  216 (406)
Q Consensus       137 l~~~~~~p~~~~~~l~~~~~l~Plla~~l~~~~~l~~~~~~GlvL~a~~P~~~~s~v~t~~~gGd~ala~~~~~~stlls  216 (406)
                      .+...|+++.++.++.+--++--..++.+++.+|.|++....+.==+  =+++.+.-.++..||+.++++..++++-+++
T Consensus        86 ~~~lk~~~~~Il~~~~vG~~~~i~s~~~la~~lgl~~~~~~Sl~pKS--VTtPIAm~is~~iGG~psLtA~~ViitGi~G  163 (232)
T PRK04288         86 RDVLKKYWWQILGGIVVGSVCSVLIIYLVAKLIQLDNAVMASMLPQA--ATTAIALPVSAGIGGIKEITSFAVIFNAVII  163 (232)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhHh--hhHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence            33334566778888777777777778899999999997655543211  1233344599999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 037575          217 VLITPLLTGLL  227 (406)
Q Consensus       217 ~~~~Pl~l~ll  227 (406)
                      .+.-|.++.++
T Consensus       164 ai~g~~llk~~  174 (232)
T PRK04288        164 YALGAKFLKLF  174 (232)
T ss_pred             HHHHHHHHHHc
Confidence            99999998876

>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase

Probab=94.60  E-value=1.6  Score=43.67  Aligned_cols=103  Identities=18%  Similarity=0.159  Sum_probs=79.3

Q ss_pred             HHHHHhcccCCHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhcCchhhHHH-HHHHHcCCC
Q 037575          123 GIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVLIAKAFGIPQIFYAGFVLTACVSGAQLSS-YASFLSKGD  201 (406)
Q Consensus       123 ~iMf~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~~l~Plla~~l~~~~~l~~~~~~GlvL~a~~P~~~~s~-v~t~~~gGd  201 (406)
                      .+-..+|++.+.+++++..|.....+...+.-....=+.++.+.+..+.|.    .-.+++.+|+|.... ..+...|.|
T Consensus       212 ~iG~~iG~~f~~~~l~~~~~~~~~~l~~~~~~l~~~~~~a~~l~~~~~~~~----~t~~La~aPGGl~eM~l~A~~l~~d  287 (318)
T PF05145_consen  212 LIGASIGSRFTRETLRELRRLLPPALLSTLLLLALCALFAWLLSRLTGIDF----LTALLATAPGGLAEMALIALALGAD  287 (318)
T ss_pred             HHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH----HHHHHHhCCccHHHHHHHHHHcCCC
Confidence            333678999999999988765555444444445555566777777777765    446788999998776 589999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 037575          202 VAVSILLSSSTTIASVLITPLLTGLLIG  229 (406)
Q Consensus       202 ~ala~~~~~~stlls~~~~Pl~l~ll~g  229 (406)
                      +++.+...++=-+.-.++.|++..++..
T Consensus       288 ~~~V~~~q~~Rl~~v~~~~p~~~r~~~r  315 (318)
T PF05145_consen  288 VAFVAAHQVVRLLFVLLLAPFIARWLRR  315 (318)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998887653

The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.

>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family

Probab=94.54  E-value=0.39  Score=47.67  Aligned_cols=113  Identities=15%  Similarity=0.185  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHHHHH-Hhh--hHh-HHHhHhcccchHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 037575          244 LQVVLVPVALGLGL-NTY--AKP-VVSFLRPVMPFVAMICTSLCIGSPLAINRSQILSIEGLQLVLPVLTFHAVAFAVGY  319 (406)
Q Consensus       244 l~~vllPl~lG~ll-r~~--~p~-~~~~i~~~l~~is~l~lllii~~~~~~n~~~i~~~~~~~i~~~~lll~~~~f~lG~  319 (406)
                      +.-+++-+.+|.++ |+.  .++ ..+.+.+..-   .+.+=..+...+.....+..+...+.............+.++|
T Consensus        10 ilpv~~ii~lG~~~~~r~~~~~~~~~~~l~~~v~---~i~lP~lif~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   86 (321)
T TIGR00946        10 VLPILVVILLGYILGKRFGILDEEHASGINRFVI---NFALPLTIFHSISTTLADILQKSQSPVVLFLWGAFSGSYALIW   86 (321)
T ss_pred             HHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566778889999 764  222 2233333322   2222223333333221110111112222333334456678888


Q ss_pred             HHhc-ccCCCCCccceeeeeeecccccH-HHHHHHHHHhcCCcc
Q 037575          320 WVSK-IPSWRQGEEVSRTISLCTGMQSS-TLAGLLATQFLGSSQ  361 (406)
Q Consensus       320 ~l~r-~~~~~~~~~~~~a~~~~~g~rN~-~Lai~lA~~~f~~~~  361 (406)
                      .++| .  ++.+++++.+..++++..|. -++..++...|+++.
T Consensus        87 ~~~~~~--~~~~~~~~~~~~~~~~~~N~~~~GlPl~~~~~G~~~  128 (321)
T TIGR00946        87 LITKPL--FKADYGKLSGFLLVSALPNTAFIGYPLLLSLFGEEG  128 (321)
T ss_pred             HHHHHH--HhcccchhhHHHHHhhhccceeehHHHHHHHhcccc
Confidence            8888 5  56677777788888888896 458999999998765

>PRK10711 hypothetical protein; Provisional

Probab=94.41  E-value=0.59  Score=44.54  Aligned_cols=90  Identities=11%  Similarity=0.007  Sum_probs=68.7

Q ss_pred             HHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhcCchhhHHHHHHHHcCCChHHHHHHHHHHHHH
Q 037575          136 DFALAFKRPLPLSVGFVAQYIIKPILGVLIAKAFGIPQIFYAGFVLTACVSGAQLSSYASFLSKGDVAVSILLSSSTTIA  215 (406)
Q Consensus       136 ~l~~~~~~p~~~~~~l~~~~~l~Plla~~l~~~~~l~~~~~~GlvL~a~~P~~~~s~v~t~~~gGd~ala~~~~~~stll  215 (406)
                      +.+...+|.+.+..++.+--++--..++.+++.++.|++....+.==+  =+++.+.-.++..||+.++++..++++-++
T Consensus        80 q~~~lk~~~~~I~~~~~vG~~v~i~s~~~l~~~lg~~~~~~~Sl~pkS--VTtPIAm~is~~iGG~~sLta~~ViitGi~  157 (231)
T PRK10711         80 QLHQIRARWKSIISICFIGSVVAMVTGTAVALWMGATPEIAASILPKS--VTTPIAMAVGGSIGGIPAISAVCVIFVGIL  157 (231)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhhh--hhHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence            333344566778888777777777778899999999998765554221  122334458999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 037575          216 SVLITPLLTGLL  227 (406)
Q Consensus       216 s~~~~Pl~l~ll  227 (406)
                      +.+.-|.++.++
T Consensus       158 Ga~~g~~llk~~  169 (231)
T PRK10711        158 GAVFGHTLLNAM  169 (231)
T ss_pred             HHHHHHHHHHHc
Confidence            999999998876

>TIGR00698 conserved hypothetical integral membrane protein

Probab=93.28  E-value=10  Score=38.27  Aligned_cols=106  Identities=14%  Similarity=0.093  Sum_probs=64.5

Q ss_pred             HHHHHHHHHhcccCCHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH-HHcCCChHHH----HHHHHHhcCchhhHHHH
Q 037575          119 PALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVLIA-KAFGIPQIFY----AGFVLTACVSGAQLSSY  193 (406)
Q Consensus       119 ~~l~~iMf~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~~l~Plla~~l~-~~~~l~~~~~----~GlvL~a~~P~~~~s~v  193 (406)
                      ..+-.-...+|.+++++|+.+.-.+  .+..... .....=++++.++ +.+++|++..    .|.-+|++.-....+++
T Consensus        66 ~lLr~gIVLlG~~l~~~~i~~~G~~--~l~~~~~-~v~~~~~~~~~~g~k~l~l~~~~~~Lia~GtsICGaSAi~A~a~~  142 (335)
T TIGR00698        66 FLLRIGITLYGFRLTFPYIADVGPN--EIVADTL-ILTSTFFLTVFLGSSRLKLDKQMSILLGAGSSICGAAAVAAIEPV  142 (335)
T ss_pred             HHHHHHHHHHCccccHHHHHHhhHH--HHHHHHH-HHHHHHHHHHHHHHHHhCCChhHHHHHHcchhHHHHHHHHHhccc
Confidence            3445566678999999999877543  2222222 1222223344555 6889987643    23333333322222222


Q ss_pred             HHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037575          194 ASFLSKGDVAVSILLSSSTTIASVLITPLLTGLLI  228 (406)
Q Consensus       194 ~t~~~gGd~ala~~~~~~stlls~~~~Pl~l~ll~  228 (406)
                      . +--+-|.+++++.+.+-+.++++..|....++.
T Consensus       143 i-~A~~~~~a~ava~V~lfgt~am~l~P~l~~~l~  176 (335)
T TIGR00698       143 I-KAEKEKVSVAIAIVVIFGTTGIFLYPSIYHYAS  176 (335)
T ss_pred             c-CCCccceeeeehHHHHHHHHHHHHHHHHHHHHc
Confidence            2 233467889999999999999999999987764

Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.

>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins

Probab=93.17  E-value=10  Score=38.05  Aligned_cols=100  Identities=21%  Similarity=0.193  Sum_probs=66.7

Q ss_pred             HHHHhcccCCHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhcCchhhHHHHHHHHcCCChH
Q 037575          124 IMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVLIAKAFGIPQIFYAGFVLTACVSGAQLSSYASFLSKGDVA  203 (406)
Q Consensus       124 iMf~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~~l~Plla~~l~~~~~l~~~~~~GlvL~a~~P~~~~s~v~t~~~gGd~a  203 (406)
                      +++.+|.-.|+.   ....||+..+.+...|+.++  .++..+..+|.++..+..+-+.+..=+. .+...+.+..-|.-
T Consensus        75 IF~GIGAmtDFg---pllanP~~~llGaaAQ~Gif--~t~~~A~~lGf~~~eAAsIgIIGgADGP-tsIf~s~~LAp~Ll  148 (360)
T PF03977_consen   75 IFMGIGAMTDFG---PLLANPKTLLLGAAAQFGIF--ATFLGAILLGFTPKEAASIGIIGGADGP-TSIFVSSKLAPHLL  148 (360)
T ss_pred             HHHHHhHHHhhH---HHHhCHHHHHHHHHHHHhHH--HHHHHHHHhCCCHHHhhHhhhcccCCCc-HHHHHHHhhhHHHH
Confidence            445778766555   44689999999999999874  5666667778998888888777766554 34444444444443


Q ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHhC
Q 037575          204 VSILLSSST-TIASVLITPLLTGLLIG  229 (406)
Q Consensus       204 la~~~~~~s-tlls~~~~Pl~l~ll~g  229 (406)
                      -.++....| .-+.++.-|-.+.++..
T Consensus       149 gpIaVaAYsYMaLvPiiqPpimklLtt  175 (360)
T PF03977_consen  149 GPIAVAAYSYMALVPIIQPPIMKLLTT  175 (360)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHhcC
Confidence            333333333 34567888888888864

The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport

>TIGR00844 c_cpa1 na(+)/h(+) antiporter

Probab=92.89  E-value=18  Score=40.70  Aligned_cols=26  Identities=8%  Similarity=0.020  Sum_probs=21.5

Q ss_pred             HHHHHHHHHhcccCCHHHHHHHhcCc
Q 037575          119 PALGGIMLSIGIRLSIEDFALAFKRP  144 (406)
Q Consensus       119 ~~l~~iMf~~Gl~l~~~~l~~~~~~p  144 (406)
                      .++.++.|..|++++.+.+++.++.+
T Consensus        77 IvL~I~LFa~Gl~L~~~~Lrr~wrsV  102 (810)
T TIGR00844        77 ILLCLQVFAVSVELPRKYMLKHWVSV  102 (810)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHhHHHH
Confidence            57778889999999999998776544

This model is specific for the fungal members of this family.

>COG2855 Predicted membrane protein [Function unknown]

Probab=92.82  E-value=10  Score=38.04  Aligned_cols=134  Identities=16%  Similarity=0.113  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHHHhhccchhhHhh--hhhHHHHHHHHHHHhcccCCHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHH
Q 037575           91 LPFVVALTAVAALAQPSTFTWVS--KELYAPALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVLIAKA  168 (406)
Q Consensus        91 ~~~~~~~~~~lgl~~P~~~~~l~--~~~~~~~l~~iMf~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~~l~Plla~~l~~~  168 (406)
                      +.+.++.++++|......-+...  +......+-.-....|.+++++|+.+.--+-   .....+.....=++++.+++.
T Consensus        40 l~lAIllGi~l~~l~~~~~~~~~GI~fs~k~LLr~gIvLlG~~ltl~~i~~~G~~~---v~~~~~~l~~t~~~~~~lg~~  116 (334)
T COG2855          40 LTLAILLGILLGILPQIPAQTSAGITFSSKKLLRLGIVLLGFRLTLSDIADVGGSG---VLIIAITLSSTFLFAYFLGKL  116 (334)
T ss_pred             HHHHHHHHHHHhccccchhhhccchhhhHHHHHHHHHHHHcceeeHHHHHHcCccH---HHHHHHHHHHHHHHHHHHHHH
Confidence            45566666666733222211110  1112344445556779999999999775432   222223333444667888899


Q ss_pred             cCCChHHHHHHHHHhcCchhhHHHHHH----HHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037575          169 FGIPQIFYAGFVLTACVSGAQLSSYAS----FLSKGDVAVSILLSSSTTIASVLITPLLTGLLI  228 (406)
Q Consensus       169 ~~l~~~~~~GlvL~a~~P~~~~s~v~t----~~~gGd~ala~~~~~~stlls~~~~Pl~l~ll~  228 (406)
                      +++|...+ -++-+++.=||.++.+-+    .--+-|++.++..+++-..++++..|....++.
T Consensus       117 lgld~~~a-~Lia~GssICGasAiaA~~pvika~~~eva~aIa~V~lfgtia~llyP~l~~~l~  179 (334)
T COG2855         117 LGLDKKLA-LLIAAGSSICGASAIAATAPVIKAEEEEVAVAIAVVVLFGTLAMLLYPLLYPLLG  179 (334)
T ss_pred             hCCCHHHH-HHHHccchhhHHHHHHHhCCcCCCCccccceehhhHHHHHHHHHHHHHHHHHHhC
Confidence            99988643 233344444554444322    233467889999999988889999999887763

>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]

Probab=92.81  E-value=11  Score=37.48  Aligned_cols=121  Identities=21%  Similarity=0.306  Sum_probs=69.7

Q ss_pred             HHhhccchhhH--hhhhhHHHHHHHHHHHhcccCCHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHH
Q 037575          101 AALAQPSTFTW--VSKELYAPALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVLIAKAFGIPQIFYAG  178 (406)
Q Consensus       101 lgl~~P~~~~~--l~~~~~~~~l~~iMf~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~~l~Plla~~l~~~~~l~~~~~~G  178 (406)
                      +|-.-|++...  +...+.-..+.+.||.+|+..+.+|+..+.   ...+.+-+.|..+.-++++++.+..+.+-  -.|
T Consensus        43 ~gpftpGFvad~~La~~LAelGViLLmFgvGLhfslkdLLavk---~iAipgAl~qia~at~lg~gL~~~lgws~--~~g  117 (408)
T COG4651          43 AGPFTPGFVADQTLAPELAELGVILLMFGVGLHFSLKDLLAVK---AIAIPGALAQIALATLLGMGLSSLLGWSF--GTG  117 (408)
T ss_pred             cCCCCCCcccchhHHHHHHHhhHHHHHHhcchheeHHHHhhHH---HHhcchHHHHHHHHHHHHhHHHHHcCCCc--ccc
Confidence            34445555432  222333467788999999999999998552   22355667788888889999999887653  234


Q ss_pred             HHHHhcCchhhHHHHHHHHc----------CCChHHHH-HHHHHHHHHHHHHHHHHHHHHh
Q 037575          179 FVLTACVSGAQLSSYASFLS----------KGDVAVSI-LLSSSTTIASVLITPLLTGLLI  228 (406)
Q Consensus       179 lvL~a~~P~~~~s~v~t~~~----------gGd~ala~-~~~~~stlls~~~~Pl~l~ll~  228 (406)
                      ++.--|...+  |.+...++          +|..+..- .+-=+..++..+..|..-..+.
T Consensus       118 lvfGlaLS~a--STVvllraLqEr~lidt~rG~iAiGwLiveDl~mVl~Lvllpa~a~~~g  176 (408)
T COG4651         118 IVFGLALSVA--STVVLLRALEERQLIDTQRGRIAIGWLIVEDLAMVLALVLLPALAGVLG  176 (408)
T ss_pred             eeeeehhhhH--HHHHHHHHHHHhccccccCceEEEeehhHHHHHHHHHHHHhHHHHhhhc
Confidence            4443333333  33322211          34333221 2223345566677787776654

>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit

Probab=91.81  E-value=16  Score=37.11  Aligned_cols=101  Identities=19%  Similarity=0.147  Sum_probs=64.6

Q ss_pred             HHHHHhcccCCHHHHHHHhcCchhHHH-HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhcCchhhHHHHHHHHcCCC
Q 037575          123 GIMLSIGIRLSIEDFALAFKRPLPLSV-GFVAQYIIKPILGVLIAKAFGIPQIFYAGFVLTACVSGAQLSSYASFLSKGD  201 (406)
Q Consensus       123 ~iMf~~Gl~l~~~~l~~~~~~p~~~~~-~l~~~~~l~Plla~~l~~~~~l~~~~~~GlvL~a~~P~~~~s~v~t~~~gGd  201 (406)
                      ++++.+|.-.|+.-+   ..+|+..++ +...|+.++  .++..+..+|.+...+..+-+.+..=+.+ +...+.+..-|
T Consensus       110 LIFlGIGAMtDFgpl---lanP~~~ll~gaaAQ~GiF--~t~~~A~~lGF~~~eAAsIgIIGgADGPT-aIf~s~kLAp~  183 (399)
T TIGR03136       110 ILFFGIGAMSDISFI---LARPWASITVALFAEMGTF--ATLVIGYYCGLTPGEAAAVGTIGGADGPM-VLFASLILAKD  183 (399)
T ss_pred             HHHHhccHHhcchHH---HhChHHHHHHHHHHHhhHH--HHHHHHHHcCCCHHHhhHHhhcccCCccH-HHHHHHhhhhH
Confidence            344677876665555   688999888 788898874  45556667788888888887777665543 34344444444


Q ss_pred             hHHHHHHHHHH-HHHHHHHHHHHHHHHhC
Q 037575          202 VAVSILLSSST-TIASVLITPLLTGLLIG  229 (406)
Q Consensus       202 ~ala~~~~~~s-tlls~~~~Pl~l~ll~g  229 (406)
                      .--+++....| .-+.++.-|-.+.++..
T Consensus       184 Llg~IaVAAYsYMaLVPiiqPpimklLtt  212 (399)
T TIGR03136       184 LFVPISIIAYLYLSLTYAGYPYLIKLLVP  212 (399)
T ss_pred             hHHHHHHHHHHHHHHHhcccchHHHhhcC
Confidence            33333333333 33567777888888864

Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.

>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]

Probab=91.10  E-value=2.6  Score=39.97  Aligned_cols=88  Identities=24%  Similarity=0.283  Sum_probs=69.3

Q ss_pred             HHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhcCchhhHHH---HHHHHcCCChHHHHHHHHH
Q 037575          135 EDFALAFKRPLPLSVGFVAQYIIKPILGVLIAKAFGIPQIFYAGFVLTACVSGAQLSS---YASFLSKGDVAVSILLSSS  211 (406)
Q Consensus       135 ~~l~~~~~~p~~~~~~l~~~~~l~Plla~~l~~~~~l~~~~~~GlvL~a~~P~~~~s~---v~t~~~gGd~ala~~~~~~  211 (406)
                      ++++...||++.+..+.++--++-=..++.+++.|+.+++...     +.+|=.+.++   -.++..||-.++.+..+++
T Consensus        81 kq~~~ik~~w~~I~~g~~vGs~~ai~s~~llak~~g~~~~~~~-----Sl~PkSvTTpiAm~vs~~iGGip~ltav~Vi~  155 (230)
T COG1346          81 KQRHLIKRHWKPILAGVLVGSVVAIISGVLLAKLFGLSPELIL-----SLLPKSVTTPIAMEVSESIGGIPALTAVFVIL  155 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH-----HhcccccccHHHHHHHHhcCCchHHHHHHHHH
Confidence            4555555777888888777666655678889999999988644     4456555444   4899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q 037575          212 TTIASVLITPLLTGLL  227 (406)
Q Consensus       212 stlls~~~~Pl~l~ll  227 (406)
                      +-+++-+.-|.++..+
T Consensus       156 tGi~Gavlg~~llk~~  171 (230)
T COG1346         156 TGILGAVLGPLLLKLL  171 (230)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999998876

>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter

Probab=90.37  E-value=3.9  Score=40.46  Aligned_cols=97  Identities=11%  Similarity=0.223  Sum_probs=52.9

Q ss_pred             cchhhccCCCC---Cc---cCcCCccccchheeeccccccC---------CcccccccHHHHHHhHHHHHHHHHHHHHhh
Q 037575           40 GGLCTLACSTS---PF---VGRVGLQRREGNVSLLSFGINA---------GSVVARYDSSQVLSAMLPFVVALTAVAALA  104 (406)
Q Consensus        40 ~~~~~~~~~~~---~~---~g~~g~~~~~~~~~~~~f~~~~---------~~~~~~~~~~~~l~~~~~~~~~~~~~lgl~  104 (406)
                      .+...+|+.|+   =|   +|.|||..-.+++.+.+...-|         .+-.+ -.+..++....|+.  ++.++|-+
T Consensus       111 ~LAiiaA~~nsNggLY~aL~~qyGd~~D~gA~~i~sl~~GPf~TMi~LG~sGlA~-ip~~~lv~~ilPll--iG~ilGNL  187 (314)
T TIGR00793       111 TLALVAAMDMTNGGLYASIMQQYGTKEEAGAFVLMSLESGPLMTMVILGTAGIAS-FEPHVFVGAVLPFL--VGFALGNL  187 (314)
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHcCCHhhhhhhhhhhhccCcHHHHHHHhhccCCC-CCHHHHHHHHHHHH--HHHHHhcC
Confidence            34445555554   34   3348888888888777777767         11111 12344444444442  34455555


Q ss_pred             ccchhhHhhhhhHHHHHHHHHHHhcccCCHHHHHHH
Q 037575          105 QPSTFTWVSKELYAPALGGIMLSIGIRLSIEDFALA  140 (406)
Q Consensus       105 ~P~~~~~l~~~~~~~~l~~iMf~~Gl~l~~~~l~~~  140 (406)
                      .|++-+.+ ++-.+..+++.-|.+|.+++++++.+.
T Consensus       188 D~~~r~fl-~~~~~~lIpFf~FaLGaginl~~i~~a  222 (314)
T TIGR00793       188 DPELRDFF-SKAVQTLIPFFAFALGNTIDLGVIIQT  222 (314)
T ss_pred             CHHHHHHh-ccCCCeeeehhhhhhcCCCCHHHHHHh
Confidence            66544333 232333444555788888888777543

This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.

>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins

Probab=89.99  E-value=2  Score=42.68  Aligned_cols=134  Identities=16%  Similarity=0.236  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHHHHHhhhHhHHHhHhcccchHH----HHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 037575          245 QVVLVPVALGLGLNTYAKPVVSFLRPVMPFVA----MICTSLCIGSPLAINRSQILSIEGLQLVLPVLTFHAVAFAVGYW  320 (406)
Q Consensus       245 ~~vllPl~lG~llr~~~p~~~~~i~~~l~~is----~l~lllii~~~~~~n~~~i~~~~~~~i~~~~lll~~~~f~lG~~  320 (406)
                      -..++.+++|++++.+..+..++.++-.+..+    .+.+++.   -+-.+-+++.+. ++..++...+.....+.++++
T Consensus        27 ~~~~~AillG~~i~n~~~~~~~~~~~Gi~~~~k~~Lr~gIVLl---G~~l~~~~i~~~-G~~~~~~~~~~v~~~~~~~~~  102 (305)
T PF03601_consen   27 GALLIAILLGMLIGNLFFGLPARFKPGIKFSSKKLLRLGIVLL---GFRLSFSDILAL-GWKGLLIIIIVVILTFLLTYW  102 (305)
T ss_pred             cHHHHHHHHHHHHhhhccCCcHHHHhHHHHHHHHHHHHHHHHH---CccccHHHHHHh-CccHHHHHHHHHHHHHHHHHH
Confidence            35567888999999733333334443333322    2222222   122344555553 555555566666778889999


Q ss_pred             Hh-cccCCCCCccceeeeeeecccccHHHHHHHHHHhc-CC-ccc--H-HHHHHHHHHHHHHHHHHHHHh
Q 037575          321 VS-KIPSWRQGEEVSRTISLCTGMQSSTLAGLLATQFL-GS-SQA--V-PPACSVIAMAIMGLCLASFWG  384 (406)
Q Consensus       321 l~-r~~~~~~~~~~~~a~~~~~g~rN~~Lai~lA~~~f-~~-~~a--l-p~~~y~v~q~i~~~~la~~~~  384 (406)
                      ++ |+  +|.|++.+.-++-.++..-.+-.++.+-.-= ++ +.+  + -+.++....+++-..++.++.
T Consensus       103 lg~r~--~~l~~~~~~Lia~GtsICG~SAi~A~a~~i~a~~~~~a~ava~V~lfg~vam~~~P~l~~~l~  170 (305)
T PF03601_consen  103 LGRRL--FGLDRKLAILIAAGTSICGASAIAATAPVIKAKEEDVAYAVATVFLFGTVAMFLYPLLGHALG  170 (305)
T ss_pred             HHHHH--hCCCHHHHHHHHhhcccchHHHHHHHcccccCCCCceeeeehHHHHHHHHHHHHHHHHHHHhC
Confidence            99 88  8888776555554444444333333332211 12 222  2 223455555555555554444

; GO: 0016021 integral to membrane

>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]

Probab=88.90  E-value=17  Score=36.77  Aligned_cols=103  Identities=19%  Similarity=0.095  Sum_probs=77.7

Q ss_pred             HHHHHHhcccCCHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhcCchhhHHHH-HHHHcCC
Q 037575          122 GGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVLIAKAFGIPQIFYAGFVLTACVSGAQLSSY-ASFLSKG  200 (406)
Q Consensus       122 ~~iMf~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~~l~Plla~~l~~~~~l~~~~~~GlvL~a~~P~~~~s~v-~t~~~gG  200 (406)
                      ..+.-.+|++++...+++..|--.......+..+...=..++.+.+..+.|..    ...++.+|+|..... .+...+-
T Consensus       244 ~~iG~~IG~~f~~~~l~~~~r~~~~~~v~ii~l~~~~~~~a~ll~~~~~i~~~----ta~La~sPGGl~~ma~~A~~l~a  319 (352)
T COG3180         244 ALIGALIGSRFDRSILREAKRLLPAILVSIIALMAIAAGMAGLLSWLTGIDLN----TAYLATSPGGLDTMAAIAAALGA  319 (352)
T ss_pred             HHHHHHHcccccHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHhcCCCHH----HHHHHcCCCcHHHHHHHHHHcCC
Confidence            34446779999999998886655555555555566666667788887777754    346789999988774 7777778


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037575          201 DVAVSILLSSSTTIASVLITPLLTGLLI  228 (406)
Q Consensus       201 d~ala~~~~~~stlls~~~~Pl~l~ll~  228 (406)
                      |.++-.++.++=-++-.++.|.+...+.
T Consensus       320 d~a~V~a~q~lRll~il~i~p~l~r~l~  347 (352)
T COG3180         320 DPAFVMALQVLRLLFILLLGPALARFLS  347 (352)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999988888888888777654

>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate

Probab=87.10  E-value=38  Score=34.59  Aligned_cols=178  Identities=15%  Similarity=0.215  Sum_probs=90.7

Q ss_pred             HHHHHHhHHHHHHHHHHHHHhhccchhhHhh------hhhHHHHHHHHHH-HhcccCCHHHHHHHhcCchhHHHHHHHHH
Q 037575           83 SSQVLSAMLPFVVALTAVAALAQPSTFTWVS------KELYAPALGGIML-SIGIRLSIEDFALAFKRPLPLSVGFVAQY  155 (406)
Q Consensus        83 ~~~~l~~~~~~~~~~~~~lgl~~P~~~~~l~------~~~~~~~l~~iMf-~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~  155 (406)
                      -.++++|+....-++++.++...+.......      +..+...+....| ++|++-+.+.+++..|+-...+.......
T Consensus        25 ki~~lqk~~IPasvIgGli~~il~~~l~~~~~~~~~f~~~l~~~lm~~fF~~igL~~~~~~lkkgg~~~~~~~~~~~~~~  104 (368)
T PF03616_consen   25 KIPFLQKLFIPASVIGGLIFAILPLILGGFGGISISFDTSLQDFLMIIFFTTIGLGASLKLLKKGGKAVLIFLLIAIILA  104 (368)
T ss_pred             HhHHHHHccCCchHHHHHHHHHHHHHHHhcCceEEEechhHHHHHHHHHHHHHhhccchhhHHhhHHHHHHHHHHHHHHH
Confidence            4667778765555555565544443222111      1112333333334 77999999988876543222222211223


Q ss_pred             HHHHHHHHHHHHHcCCChHHHHHHHHH-hcC---chhh--HHHHHHHHcC--CChHHHHHHHHHHHHHH-HHHHHHHHHH
Q 037575          156 IIKPILGVLIAKAFGIPQIFYAGFVLT-ACV---SGAQ--LSSYASFLSK--GDVAVSILLSSSTTIAS-VLITPLLTGL  226 (406)
Q Consensus       156 ~l~Plla~~l~~~~~l~~~~~~GlvL~-a~~---P~~~--~s~v~t~~~g--Gd~ala~~~~~~stlls-~~~~Pl~l~l  226 (406)
                      .+.=.++..++.+++++|.+  |++.- ...   +++.  .++.+.+.+|  +-.+++.+..++..+.+ ++=.|+.=++
T Consensus       105 ~~Q~~vG~~la~l~gl~p~~--Gll~Gsi~f~GGhGTAaa~g~~fe~~~G~~~a~~vg~a~AT~Glv~G~liGgpi~~~l  182 (368)
T PF03616_consen  105 FLQNIVGLGLAKLLGLDPLF--GLLAGSIGFTGGHGTAAAFGPTFEELYGWEGATSVGMAAATFGLVVGGLIGGPIANWL  182 (368)
T ss_pred             HHHHHHHHHHHHHhCCCchH--HHHhccccccCCccHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445577788888998754  54321 111   2222  3345665544  33455566666666654 4556765443


Q ss_pred             HhCCc------------------------cccChHHHHHHHHHHHHHHHHHHHHHHhhhHh
Q 037575          227 LIGSV------------------------IPVDAVAMSKSILQVVLVPVALGLGLNTYAKP  263 (406)
Q Consensus       227 l~g~~------------------------v~vd~~~l~~~ll~~vllPl~lG~llr~~~p~  263 (406)
                      .-...                        -+++..+++..+ ..+.+.+.+|..++++..+
T Consensus       183 irk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~i~~l-~~i~i~~~~G~~i~~~l~~  242 (368)
T PF03616_consen  183 IRKGKLKPKKEPDELKEYLRKGEERPSAGRPITSSSLIEHL-ALILIAIGLGYIISALLKK  242 (368)
T ss_pred             HHcCCCCCCCccccccccccccccccccccCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence            31100                        012233444443 4566777778777776543

The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane

>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit

Probab=85.99  E-value=40  Score=33.89  Aligned_cols=100  Identities=19%  Similarity=0.187  Sum_probs=57.7

Q ss_pred             HHHHhcccCCHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHcCC------ChHHHHHHHHHhcCchhhHHHHHHHH
Q 037575          124 IMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVLIAKAFGI------PQIFYAGFVLTACVSGAQLSSYASFL  197 (406)
Q Consensus       124 iMf~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~~l~Plla~~l~~~~~l------~~~~~~GlvL~a~~P~~~~s~v~t~~  197 (406)
                      +++.+|.-.|+.-   ...+|+..+.+...|+.++  .++..+..+|.      +...+..+-+.+..=+. .+...+.+
T Consensus        69 IFlGIGAmtDFgp---llanP~~~llGaaAQ~GiF--~t~~~A~~lGf~~~~~~~~~eAAsIgIIGgADGP-t~If~s~~  142 (354)
T TIGR01109        69 IFMGIGALTDFGP---LLANPRTLLLGAAAQFGIF--ATVFGALTLNFFGIISFSLPQAAAIGIIGGADGP-TAIYLSGK  142 (354)
T ss_pred             HHHhccHHhhhHH---HHhChHHHHHHHHHHhhHH--HHHHHHHHhCCCcccccChhhceeeeeeccCCCc-hhhhhHhh
Confidence            4457787665554   4688999999999999874  34455555666      44555555555544332 23333433


Q ss_pred             cCCChHHHHHHHHHH-HHHHHHHHHHHHHHHhC
Q 037575          198 SKGDVAVSILLSSST-TIASVLITPLLTGLLIG  229 (406)
Q Consensus       198 ~gGd~ala~~~~~~s-tlls~~~~Pl~l~ll~g  229 (406)
                      ..-|.--+++....| .-+.++.-|-.+.++..
T Consensus       143 lap~Llg~IaVAAYsYMaLvPiiqPpimklLtt  175 (354)
T TIGR01109       143 LAPELLAAIAVAAYSYMALVPIIQPPIMKALTS  175 (354)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhcccchHHHhhcC
Confidence            333333233333332 23566777888888764

This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=85.71  E-value=20  Score=39.25  Aligned_cols=97  Identities=19%  Similarity=0.254  Sum_probs=60.1

Q ss_pred             HHHHHhcccCCHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHcCCChH--HHHHHHHHhcCchhhHHHHHHHHcC-
Q 037575          123 GIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVLIAKAFGIPQI--FYAGFVLTACVSGAQLSSYASFLSK-  199 (406)
Q Consensus       123 ~iMf~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~~l~Plla~~l~~~~~l~~~--~~~GlvL~a~~P~~~~s~v~t~~~g-  199 (406)
                      +.+..+|+++++..+.+   +|..++..++.-++..++..++.++.++.+..  ...|+.   ..+.|-.+.+....+. 
T Consensus       276 lFFi~vG~~id~~~l~~---~~~~il~~~~~~~~~K~~~~~~~~~~~g~~~~~a~~~gl~---L~~~Gef~~vl~~~a~~  349 (621)
T PRK03562        276 LFFIAVGMSIDFGTLLE---NPLRILILLLGFLAIKIAMLWLLARPLGVPRKQRRWFAVL---LGQGGEFAFVVFGAAQM  349 (621)
T ss_pred             HHHHHhhhhccHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHH---HhccccHHHHHHHHHHH
Confidence            33357799999987763   44444444455677888888988898888654  334443   2345556655433321 


Q ss_pred             ---CChHHHHHHHHHHHHHHHHHHHHHHHH
Q 037575          200 ---GDVAVSILLSSSTTIASVLITPLLTGL  226 (406)
Q Consensus       200 ---Gd~ala~~~~~~stlls~~~~Pl~l~l  226 (406)
                         =|.+....++ ...+++.+++|++..+
T Consensus       350 ~~~i~~~~~~~lv-~~v~lS~~~tP~l~~~  378 (621)
T PRK03562        350 ANVLEPEWAKLLT-LAVALSMAATPLLLVL  378 (621)
T ss_pred             CCCCCHHHHHHHH-HHHHHHHHHHHHHHHh
Confidence               1444444444 3667788888887655

>PRK15086 ethanolamine utilization protein EutH; Provisional

Probab=85.44  E-value=46  Score=33.93  Aligned_cols=50  Identities=20%  Similarity=0.368  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHHHHHHHhCCccccChHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 037575          212 TTIASVLITPLLTGLLIGSVIPVDAVAMSKSILQVVLVPVALGLGLNTYAK  262 (406)
Q Consensus       212 stlls~~~~Pl~l~ll~g~~v~vd~~~l~~~ll~~vllPl~lG~llr~~~p  262 (406)
                      ..+.+++++|+-.. ..|-...+|...+..+++-.+++-++++..+++.-.
T Consensus       143 Gil~GiitIPiG~~-vggl~~g~~~~~il~NL~Piii~~illa~GL~~~p~  192 (372)
T PRK15086        143 GVLAGIITIPIGCL-IGGLVAGFDFALILRNLIPVIIFAILLALGLKFIPE  192 (372)
T ss_pred             HHHHHhHhhcHHHH-HHHHHHhCCHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            44556666775442 222335788888999999999999999988887643

>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments

Probab=85.41  E-value=4.7  Score=37.35  Aligned_cols=138  Identities=19%  Similarity=0.218  Sum_probs=77.1

Q ss_pred             HHHHHHHHHHHhhhHhHHHhHhcccchHHHHHHHHHHHHHHHhhhhHHhh--hhhHHHHHHHHHHHHHHHHHHHHHhccc
Q 037575          248 LVPVALGLGLNTYAKPVVSFLRPVMPFVAMICTSLCIGSPLAINRSQILS--IEGLQLVLPVLTFHAVAFAVGYWVSKIP  325 (406)
Q Consensus       248 llPl~lG~llr~~~p~~~~~i~~~l~~is~l~lllii~~~~~~n~~~i~~--~~~~~i~~~~lll~~~~f~lG~~l~r~~  325 (406)
                      +..+++|.++-++.+...+.. .....+....+++.+..-+..|++.+.+  ..+++.+...+...+.....|+..++. 
T Consensus         2 l~~li~Gi~lG~~~~~~~~~~-~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlGSllgg~l~~~l-   79 (191)
T PF03956_consen    2 LIALILGILLGYFLRPPFSLI-DKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILGSLLGGLLASLL-   79 (191)
T ss_pred             eeeHHHHHHHHHHhccccccc-ccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            345667777777654332111 2222233344444454445555433321  124555544444445566666777777 


Q ss_pred             CCCCCccceeeeeeecccccHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHhcCcccc
Q 037575          326 SWRQGEEVSRTISLCTGMQSSTLAGLLATQFLGSSQAVPPACSVIAMAIMGLCLASFWGSGSRIR  390 (406)
Q Consensus       326 ~~~~~~~~~~a~~~~~g~rN~~Lai~lA~~~f~~~~alp~~~y~v~q~i~~~~la~~~~~~~~~~  390 (406)
                       ++.+-++  +++.++|+-=-++.-.+-....+++.-.-..+..+..=++.-+...+..|+..+.
T Consensus        80 -l~~~~~~--~lav~sG~GwYSlsg~~i~~~~~~~~G~iafl~n~~RE~~a~~~~P~~~r~~~~~  141 (191)
T PF03956_consen   80 -LGLSLKE--SLAVASGFGWYSLSGVLITQLYGPELGTIAFLSNLFREILAIILIPLLARYFGPL  141 (191)
T ss_pred             -hcCCHHH--HHHHHccCcHHHhHHHHHHhhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence             5666566  5566677777778777777777776544444555666666666677777744443

Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.

>PRK15477 oxaloacetate decarboxylase subunit beta; Provisional

Probab=84.57  E-value=51  Score=33.75  Aligned_cols=101  Identities=19%  Similarity=0.178  Sum_probs=59.7

Q ss_pred             HHHHHhcccCCHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHc------CCChHHHHHHHHHhcCchhhHHHHHHH
Q 037575          123 GIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVLIAKAF------GIPQIFYAGFVLTACVSGAQLSSYASF  196 (406)
Q Consensus       123 ~iMf~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~~l~Plla~~l~~~~------~l~~~~~~GlvL~a~~P~~~~s~v~t~  196 (406)
                      ++++.+|.-.|+.-+   ..+|+.++.+...|+.++--+  ..+..+      |.+...+..+-+.+..=+. .+...+.
T Consensus       139 LIF~GIGAMtDFgpL---lanP~~~llGaAAQ~GIF~t~--~~A~~l~~~g~~GF~~~eAAsIgIIGGADGP-TsIfvss  212 (433)
T PRK15477        139 VIFMGVGAMTDFGPL---LANPRTLLLGAAAQFGIFATV--LGALTLNYFGLISFTLPQAAAIGIIGGADGP-TAIYLSG  212 (433)
T ss_pred             HHHHhccHHhcchHH---hhCHHHHHHHHHHHhhHHHHH--HHHHHHhhcccCCCChhhchheeeeccCCCc-hHHHhHh
Confidence            344677876665554   688999999999999775433  333332      5676667666666555443 3333444


Q ss_pred             HcCCChHHHHHHHHHH-HHHHHHHHHHHHHHHhC
Q 037575          197 LSKGDVAVSILLSSST-TIASVLITPLLTGLLIG  229 (406)
Q Consensus       197 ~~gGd~ala~~~~~~s-tlls~~~~Pl~l~ll~g  229 (406)
                      +..-|.--+++....| .-+.++.-|-.+.++..
T Consensus       213 kLAP~Llg~IaVAAYSYMaLVPiIQPpimklLTT  246 (433)
T PRK15477        213 KLAPELLGAIAVAAYSYMALVPLIQPPIMKALTT  246 (433)
T ss_pred             hhhhHhHHHHHHHHHHHHHHHhcccchHHHhccC
Confidence            4443333333333332 33567777888888764

>PRK15476 oxaloacetate decarboxylase subunit beta; Provisional

Probab=84.52  E-value=51  Score=33.73  Aligned_cols=101  Identities=19%  Similarity=0.178  Sum_probs=59.7

Q ss_pred             HHHHHhcccCCHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHc------CCChHHHHHHHHHhcCchhhHHHHHHH
Q 037575          123 GIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVLIAKAF------GIPQIFYAGFVLTACVSGAQLSSYASF  196 (406)
Q Consensus       123 ~iMf~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~~l~Plla~~l~~~~------~l~~~~~~GlvL~a~~P~~~~s~v~t~  196 (406)
                      ++++.+|.-.|+.-+   ..+|+.++.+...|+.++--+  ..+..+      |.+...+..+-+.+..=+. .+...+.
T Consensus       139 LIF~GIGAMtDFgpL---lanP~~~llGaAAQ~GIF~t~--~~A~~l~~~g~~GF~~~eAAsIgIIGGADGP-TsIfvss  212 (433)
T PRK15476        139 VIFMGVGAMTDFGPL---LANPRTLLLGAAAQFGIFATV--LGALTLNYFGLISFTLPQAAAIGIIGGADGP-TAIYLSG  212 (433)
T ss_pred             HHHHhccHHhcchHH---hhCHHHHHHHHHHHhhHHHHH--HHHHHHhhcccCCCChhhchheeeeccCCCc-hHHHhHh
Confidence            344677876665554   688999999999999775433  333332      5676667666666555443 3333444


Q ss_pred             HcCCChHHHHHHHHHH-HHHHHHHHHHHHHHHhC
Q 037575          197 LSKGDVAVSILLSSST-TIASVLITPLLTGLLIG  229 (406)
Q Consensus       197 ~~gGd~ala~~~~~~s-tlls~~~~Pl~l~ll~g  229 (406)
                      +..-|.--+++....| .-+.++.-|-.+.++..
T Consensus       213 kLAP~Llg~IaVAAYSYMaLVPiIQPpimklLTT  246 (433)
T PRK15476        213 KLAPELLGAIAVAAYSYMALVPLIQPPIMKALTT  246 (433)
T ss_pred             hhhhHhHHHHHHHHHHHHHHHhcccchHHHhccC
Confidence            4443333333333332 33567777888888764

>PRK15475 oxaloacetate decarboxylase subunit beta; Provisional

Probab=83.91  E-value=54  Score=33.55  Aligned_cols=101  Identities=19%  Similarity=0.178  Sum_probs=59.8

Q ss_pred             HHHHHhcccCCHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHc------CCChHHHHHHHHHhcCchhhHHHHHHH
Q 037575          123 GIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVLIAKAF------GIPQIFYAGFVLTACVSGAQLSSYASF  196 (406)
Q Consensus       123 ~iMf~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~~l~Plla~~l~~~~------~l~~~~~~GlvL~a~~P~~~~s~v~t~  196 (406)
                      ++++.+|.-.|+.-+   ..+|+.++.+...|+.++--+  ..+..+      |.+...+..+-+.+..=+. .+...+.
T Consensus       139 LIF~GIGAMtDFgpL---lanP~~~llGaAAQ~GIF~t~--~~A~~l~~~g~~GF~~~eAAsIgIIGGADGP-TsIfvss  212 (433)
T PRK15475        139 VIFMGVGAMTDFGPL---LANPRTLLLGAAAQFGIFATV--LGALTLNYFGLISFTLPQAAAIGIIGGADGP-TAIYLSG  212 (433)
T ss_pred             HHHHhccHHhcchHH---hhCHHHHHHHHHHHhhHHHHH--HHHHHHhhcccCCCChhhchheeeeccCCCc-hHHHhHh
Confidence            344677876665554   688999999999999875433  333332      5676667666666555443 3333444


Q ss_pred             HcCCChHHHHHHHHHH-HHHHHHHHHHHHHHHhC
Q 037575          197 LSKGDVAVSILLSSST-TIASVLITPLLTGLLIG  229 (406)
Q Consensus       197 ~~gGd~ala~~~~~~s-tlls~~~~Pl~l~ll~g  229 (406)
                      +..-|.--+++....| .-+.++.-|-.+.++..
T Consensus       213 kLAP~Llg~IaVAAYSYMaLVPiIQPpimklLTT  246 (433)
T PRK15475        213 KLAPELLGAIAVAAYSYMALVPLIQPPIMKALTT  246 (433)
T ss_pred             hhhhHhHHHHHHHHHHHHHHHhcccchHHHhccC
Confidence            4443333333333332 34567777888888764

>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi

Probab=82.81  E-value=7.8  Score=38.53  Aligned_cols=98  Identities=15%  Similarity=0.200  Sum_probs=51.2

Q ss_pred             cchhhccCCCC---CccC---cCCccccchheeeccccccC--------CcccccccHHHHHHhHHHHHHHHHHHHHhhc
Q 037575           40 GGLCTLACSTS---PFVG---RVGLQRREGNVSLLSFGINA--------GSVVARYDSSQVLSAMLPFVVALTAVAALAQ  105 (406)
Q Consensus        40 ~~~~~~~~~~~---~~~g---~~g~~~~~~~~~~~~f~~~~--------~~~~~~~~~~~~l~~~~~~~~~~~~~lgl~~  105 (406)
                      .+...+|+.|+   =|++   .|||..-.+++...+..+.|        ..+...-.+...+....|++  ++.++|-+.
T Consensus       111 ~LAiiaa~~~~NggLY~aL~~~yGd~~D~gA~~i~sl~~GPf~tMl~LG~sG~a~ip~~~lv~~llP~i--iG~iLGNLD  188 (314)
T PF03812_consen  111 ALAIIAAMTNSNGGLYLALMGQYGDEEDVGAFSILSLNDGPFFTMLALGASGLANIPWMSLVAALLPII--IGMILGNLD  188 (314)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHhCCHHHhHHHHHHHhhhhHHHHHHHHhhccccCCCHHHHHHHHHHHH--HHHHHhcCC
Confidence            34444555444   3444   37888777887766666666        11111112444444444442  345555555


Q ss_pred             cchhhHhhhhhHHHHHHHHHHHhcccCCHHHHHHH
Q 037575          106 PSTFTWVSKELYAPALGGIMLSIGIRLSIEDFALA  140 (406)
Q Consensus       106 P~~~~~l~~~~~~~~l~~iMf~~Gl~l~~~~l~~~  140 (406)
                      |++-..+ ++-....+++.-|.+|.+++++++.+.
T Consensus       189 ~~~r~fl-~~~~~~lIPF~~f~lGa~inl~~i~~a  222 (314)
T PF03812_consen  189 PDFRKFL-APGVPILIPFFGFALGAGINLSNIIKA  222 (314)
T ss_pred             HHHHHHH-hcCCCeeeehhhhhhcCCCCHHHHHHh
Confidence            5543333 232333344444777777777777654

There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=81.51  E-value=59  Score=35.40  Aligned_cols=97  Identities=20%  Similarity=0.192  Sum_probs=59.4

Q ss_pred             HHHHHhcccCCHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHcCCChHHH--HHHHHHhcCchhhHHHHHHHHc--
Q 037575          123 GIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVLIAKAFGIPQIFY--AGFVLTACVSGAQLSSYASFLS--  198 (406)
Q Consensus       123 ~iMf~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~~l~Plla~~l~~~~~l~~~~~--~GlvL~a~~P~~~~s~v~t~~~--  198 (406)
                      +.+..+|++++++.+.+   ++..++..++..++..++..++.++.++.+...+  .|+.   ..|.|-.+.++...+  
T Consensus       273 lFFi~vGm~id~~~l~~---~~~~il~~~~~~l~~K~~~~~~~~~~~g~~~~~al~~g~~---L~~~Gef~~vl~~~a~~  346 (601)
T PRK03659        273 LFFISVGMALNLGVLYT---HLLWVLISVVVLVAVKGLVLYLLARLYGLRSSERMQFAGV---LSQGGEFAFVLFSAASS  346 (601)
T ss_pred             HHHHHHhhhccHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH---HhccccHHHHHHHHHHh
Confidence            33357799999988764   4454454555567788888888888888875433  3333   346666666543322  


Q ss_pred             -CC-ChHHHHHHHHHHHHHHHHHHHHHHHH
Q 037575          199 -KG-DVAVSILLSSSTTIASVLITPLLTGL  226 (406)
Q Consensus       199 -gG-d~ala~~~~~~stlls~~~~Pl~l~l  226 (406)
                       |- +.+....+ +...+++.+++|++..+
T Consensus       347 ~g~i~~~~~~~l-v~~v~ls~~~tP~l~~~  375 (601)
T PRK03659        347 QRLLQGDQMALL-LVVVTLSMMTTPLLMKL  375 (601)
T ss_pred             CCCCCHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence             21 22333333 55666777888877654

>KOG2722 consensus Predicted membrane protein [Function unknown]

Probab=80.62  E-value=2.4  Score=42.96  Aligned_cols=139  Identities=14%  Similarity=0.097  Sum_probs=92.0

Q ss_pred             HhHHHHHHHHHHHHHhhccc---------hhhHhhh---hhHHHHHHHHHHHhcccCCHHHHHHHhcCchhHHHHHHHHH
Q 037575           88 SAMLPFVVALTAVAALAQPS---------TFTWVSK---ELYAPALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQY  155 (406)
Q Consensus        88 ~~~~~~~~~~~~~lgl~~P~---------~~~~l~~---~~~~~~l~~iMf~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~  155 (406)
                      -+-+.+..+.+.++|..-|-         +.....+   .+-..++..+++..|-++- ++.++...+.+.++..++..+
T Consensus       246 ~~Pptia~iiA~vigai~pLr~lifg~~apl~~itdsv~llG~~~IP~illvLGgnL~-~g~~ss~~~~~~iigiii~R~  324 (408)
T KOG2722|consen  246 FAPPTIAAIIALVIGAIPPLRRLIFGEDAPLRVITDSVTLLGDGAIPCILLVLGGNLI-QGLRSSALKTSVIIGIIIGRY  324 (408)
T ss_pred             cCchHHHHHHHHHHhcchHHHHHhhccCchHHHHHHHHHHhccccchhhhhhhccccc-cCchhcccCceEEEEEEEeee
Confidence            34455666666677664441         1111111   1113456677777877765 334444455566666666799


Q ss_pred             HHHHHHHHHHHHHc------C-CChHHHHHHHHHhcCchhhHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037575          156 IIKPILGVLIAKAF------G-IPQIFYAGFVLTACVSGAQLSSYASFLSKGDVAVSILLSSSTTIASVLITPLLTGLL  227 (406)
Q Consensus       156 ~l~Plla~~l~~~~------~-l~~~~~~GlvL~a~~P~~~~s~v~t~~~gGd~ala~~~~~~stlls~~~~Pl~l~ll  227 (406)
                      +++|+.+.++....      . .||.+...+++..++|++....-+|++.|--..-+......+-.++.+.+-+|..++
T Consensus       325 illP~~gl~iv~~A~kl~~ls~~DPlF~~VllLq~~~PpAi~lg~itqL~g~~e~Ecs~il~W~y~va~l~ltvw~~~f  403 (408)
T KOG2722|consen  325 ILLPLVGLGIVRLADKLGLLSTDDPLFQFVLLLQYASPPAINLGTITQLNGVAERECSVILFWTYAVASLSLTVWSVFF  403 (408)
T ss_pred             eccchhhHHHHHHHHHhCcCCCCCchhhhhhhhhhcCCchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            99999988766532      3 577788888999999999999999999997766677777777777766666665443

>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species

Probab=80.56  E-value=73  Score=32.70  Aligned_cols=108  Identities=12%  Similarity=0.045  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHhcccCCHHHHHHHhcCchh-HHHHHHHHHHHHHHHHHHHHHH-cCCChHHHHHHHHHhcCchhhHHH-HH
Q 037575          118 APALGGIMLSIGIRLSIEDFALAFKRPLP-LSVGFVAQYIIKPILGVLIAKA-FGIPQIFYAGFVLTACVSGAQLSS-YA  194 (406)
Q Consensus       118 ~~~l~~iMf~~Gl~l~~~~l~~~~~~p~~-~~~~l~~~~~l~Plla~~l~~~-~~l~~~~~~GlvL~a~~P~~~~s~-v~  194 (406)
                      .+.++..++.+-++.|.+++.+.-+|.-. ...+.+...+-.++ ++.+... ++ +..+...-.+.+.-=+|.... ..
T Consensus        58 ~~~vPlai~LlLl~~Dlr~i~~~g~~~l~~F~~~~~g~viG~~v-a~~l~~~~l~-~~~wk~ag~l~gsyiGGs~N~~Av  135 (378)
T PF05684_consen   58 TYLVPLAIPLLLLSADLRRILRLGGRLLLAFLIGAVGTVIGAVV-AFLLFGGFLG-PEGWKIAGMLAGSYIGGSVNFVAV  135 (378)
T ss_pred             HHHHHHHHHHHHHHccHHHHHHhhHHHHHHHHHHHHHHHHHHHH-HHHHHhhccc-chHHHHHHHHHhcccCchhHHHHH
Confidence            44455555566668888888766543221 22222222333332 3332222 23 233333445555544444333 48


Q ss_pred             HHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037575          195 SFLSKGDVAVSILLSSSTTIASVLITPLLTGLL  227 (406)
Q Consensus       195 t~~~gGd~ala~~~~~~stlls~~~~Pl~l~ll  227 (406)
                      .+..+-|.++-..+...+++.+-+-+.+++.+-
T Consensus       136 ~~al~~~~~~~~a~~aaDnv~~~~~~~~l~~l~  168 (378)
T PF05684_consen  136 AEALGVSDSLFAAALAADNVVMALWFAFLLALP  168 (378)
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            888999999999999999999988888877553

>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form

Probab=80.26  E-value=88  Score=33.47  Aligned_cols=26  Identities=8%  Similarity=0.223  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHHhcccCCHHHHHHHhc
Q 037575          117 YAPALGGIMLSIGIRLSIEDFALAFK  142 (406)
Q Consensus       117 ~~~~l~~iMf~~Gl~l~~~~l~~~~~  142 (406)
                      ....++.+||..|.+++++++++..+
T Consensus        52 ~~~~Lp~lLF~~g~~~~~~~l~~~~~   77 (525)
T TIGR00831        52 LFLFLPPLLFEAAMNTDLRELRENFR   77 (525)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            34577789999999999999987654

This model is specific for the bacterial members of this family.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	406
3zuy_A	323	Crystal Structure Of A Bacterial Homologue Of The B		4e-11
3zux_A	332	Crystal Structure Of A Bacterial Homologue Of The B		7e-10

>pdb|3ZUY|A Chain A, Crystal Structure Of A Bacterial Homologue Of The Bile Acid Sodium Symporter Asbt Length = 323

Iteration: 1
 Score = 65.9 bits (159), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 54/243 (22%), Positives = 99/243 (40%), Gaps = 8/243 (3%)
Query: 106 PSTFTWVSKELYAP-ALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVL 164
           P TF W     Y P  LG IM  +G+ L   DF + FK P  + +G +AQ+ I P    L
Sbjct: 30  PDTFKWAGP--YIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPATAWL 87
Query: 165 IAKAFGIPQIFYAGFVLTACVSGAQLSSYASFLSKGDXXXXXXXXXXXXXXXXXXXXXXX 224
           ++K   +P     G +L  C  G   S+  ++L++G+                       
Sbjct: 88  LSKLLNLPAEIAVGVILVGCCPGGTASNVMTYLARGNVALSVAVTSVSTLISPLLTPAIF 147
Query: 225 XXXXXSVIPVDAVAMSKSIXXXXXXXXXXXXXXNTYAKPVVSFLRPVMPFVAMICTSLCI 284
                 ++ + A  M  SI              +         L   +P V++    L I
Sbjct: 148 LMLAGEMLEIQAAGMLMSIVKMVLLPIVLGLIVHKVLGSKTEKLTDALPLVSVAAIVLII 207
Query: 285 GSPLAINRSQILSIEGLQLVLPVLTFHAVAFAVGYWVSKIPSWRQ-GEEVSRTISLCTGM 343
           G+ +  ++ +I+   GL +   V+  + + + +G++ +K   W     +  +T+++  GM
Sbjct: 208 GAVVGASKGKIME-SGLLIFAVVVLHNGIGYLLGFFAAK---WTGLPYDAQKTLTIEVGM 263
Query: 344 QSS 346
           Q+S
Sbjct: 264 QNS 266

>pdb|3ZUX|A Chain A, Crystal Structure Of A Bacterial Homologue Of The Bile Acid Sodium Symporter Asbt Length = 332

Iteration: 1
 Score = 61.6 bits (148), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 52/243 (21%), Positives = 97/243 (39%), Gaps = 8/243 (3%)
Query: 106 PSTFTWVSKELYAP-ALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVL 164
           P TF W     Y P  LG IM  +G+ L   DF + FK P  + +G +AQ+ I P     
Sbjct: 35  PDTFKWAGP--YIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPATAWC 92
Query: 165 IAKAFGIPQIFYAGFVLTACVSGAQLSSYASFLSKGDXXXXXXXXXXXXXXXXXXXXXXX 224
           ++K   +P     G +L  C  G   S+  ++L++G+                       
Sbjct: 93  LSKLLNLPAEIAVGVILVGCCPGGTASNVMTYLARGNVALSVAVTSVSTLTSPLLTPAIF 152
Query: 225 XXXXXSVIPVDAVAMSKSIXXXXXXXXXXXXXXNTYAKPVVSFLRPVMPFVAMICTSLCI 284
                 ++ + A  M  SI              +         L   +P V++    L I
Sbjct: 153 LMLAGEMLEIQAAGMLMSIVKMVLLPIVLGLIVHKVLGSKTEKLTDALPLVSVAAIVLII 212
Query: 285 GSPLAINRSQILSIEGLQLVLPVLTFHAVAFAVGYWVSKIPSWRQ-GEEVSRTISLCTGM 343
           G+ +  ++ +I+   GL +   V+  + + + +G++ +K   W     +  + +++  GM
Sbjct: 213 GAVVGASKGKIME-SGLLIFAVVVLHNGIGYLLGFFAAK---WTGLPYDAQKALTIEVGM 268
Query: 344 QSS 346
           Q+S
Sbjct: 269 QNS 271

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	406
3zux_A	332	Transporter, ASBTNM; transport protein, membrane p	1e-82
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06

>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A* Length = 332

 Score =  255 bits (653), Expect = 1e-82
 Identities = 85/303 (28%), Positives = 151/303 (49%), Gaps = 6/303 (1%)

Query: 84  SQVLSAMLPFVVALTAVAALAQPSTFTWVSKELYAPALGGIMLSIGIRLSIEDFALAFKR 143
           S  +        AL A AA   P TF W         LG IM  +G+ L   DF + FK 
Sbjct: 13  SSFIGKTFSLWAALFAAAAFFAPDTFKWA-GPYIPWLLGIIMFGMGLTLKPSDFDILFKH 71

Query: 144 PLPLSVGFVAQYIIKPILGVLIAKAFGIPQIFYAGFVLTACVSGAQLSSYASFLSKGDVA 203
           P  + +G +AQ+ I P     ++K   +P     G +L  C  G   S+  ++L++G+VA
Sbjct: 72  PKVVIIGVIAQFAIMPATAWCLSKLLNLPAEIAVGVILVGCCPGGTASNVMTYLARGNVA 131

Query: 204 VSILLSSSTTIASVLITPLLTGLLIGSVIPVDAVAMSKSILQVVLVPVALGLGLNTYAKP 263
           +S+ ++S +T+ S L+TP +  +L G ++ + A  M  SI+++VL+P+ LGL ++     
Sbjct: 132 LSVAVTSVSTLTSPLLTPAIFLMLAGEMLEIQAAGMLMSIVKMVLLPIVLGLIVHKVLGS 191

Query: 264 VVSFLRPVMPFVAMICTSLCIGSPLAINRSQILSIEGLQLVLPVLTFHAVAFAVGYWVSK 323
               L   +P V++    L IG+ +  ++ +I+   GL +   V+  + + + +G++ +K
Sbjct: 192 KTEKLTDALPLVSVAAIVLIIGAVVGASKGKIMES-GLLIFAVVVLHNGIGYLLGFFAAK 250

Query: 324 IPSWRQGEEVSRTISLCTGMQSSTLAGLLATQFLGSSQ--AVPPACSVIAMAIMGLCLAS 381
                   +  + +++  GMQ+S LA  LA     ++   AVP A   +   I G  LA+
Sbjct: 251 W--TGLPYDAQKALTIEVGMQNSGLAAALAAAHFAAAPVVAVPGALFSVWHNISGSLLAT 308

Query: 382 FWG 384
           +W 
Sbjct: 309 YWA 311

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 3e-06
 Identities = 57/427 (13%), Positives = 111/427 (25%), Gaps = 163/427 (38%)

Query: 5   LNLTPPKLCIQKRNTALHSFRCNSILKPQKSVKANG----G---LCTLACSTSPFVGRVG 57
            N++  +    K   AL        L+P K+V  +G    G   +    C +        
Sbjct: 129 YNVSRLQP-YLKLRQALLE------LRPAKNVLIDGVLGSGKTWVALDVCLSYKV----- 176

Query: 58  LQRREGNVSLLSFGINAGSVVARYDSSQVLSAMLPFVVALTAVAALAQPSTFTWVSKELY 117
             + +  +  L+            +S + +  ML             Q      +     
Sbjct: 177 QCKMDFKIFWLNLK--------NCNSPETVLEML-------------Q-KLLYQIDPNWT 214

Query: 118 APALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVL-------IAKAFG 170
           + +      S  I+L I       +R L         Y  +  L VL          AF 
Sbjct: 215 SRSDH----SSNIKLRIHSIQAELRRLL-----KSKPY--ENCLLVLLNVQNAKAWNAFN 263

Query: 171 IPQIFYAGFVLTACVSGAQLSSYASFLSKGDVAVSILLSSSTT-IASVLITPLLTGLLIG 229
           +           +C              K      ILL   TT    V            
Sbjct: 264 L-----------SC--------------K------ILL---TTRFKQV------------ 277

Query: 230 SVIPVDAVAMSKSILQVVLVPVALGL----GLNTYAKPVVSFLRPVMPFVAMICTSL--- 282
                D ++ + +   + L   ++ L      +   K           ++      L   
Sbjct: 278 ----TDFLS-AATTTHISLDHHSMTLTPDEVKSLLLK-----------YLDCRPQDLPRE 321

Query: 283 -CIGSPLAINRSQILSIEGLQLVLPVLTFHAVAFAVGYWVSKIPSWRQ--GEEVSRTISL 339
               +P  +  S I                  A ++   ++   +W+    ++++  I  
Sbjct: 322 VLTTNPRRL--SII------------------AESIRDGLATWDNWKHVNCDKLTTIIES 361

Query: 340 CTGMQSSTLAGLLATQFLGSSQAVPPACSVIAMAIMGLCLASFWGSGSRIRDLTNILN-W 398
              +            F     +V P  + I   +    L+  W    +  D+  ++N  
Sbjct: 362 SLNVLEPA---EYRKMFD--RLSVFPPSAHIPTIL----LSLIWFDVIK-SDVMVVVNKL 411

Query: 399 HSSSAAN 405
           H  S   
Sbjct: 412 HKYSLVE 418

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	406
3zux_A	332	Transporter, ASBTNM; transport protein, membrane p	100.0

>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*

Probab=100.00  E-value=1.6e-52  Score=415.81  Aligned_cols=319  Identities=27%  Similarity=0.446  Sum_probs=287.6

Q ss_pred             ccHHHHHHhHHHHHHHHHHHHHhhccchhhHhhhhhHHHHHHHHHHHhcccCCHHHHHHHhcCchhHHHHHHHHHHHHHH
Q 037575           81 YDSSQVLSAMLPFVVALTAVAALAQPSTFTWVSKELYAPALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPI  160 (406)
Q Consensus        81 ~~~~~~l~~~~~~~~~~~~~lgl~~P~~~~~l~~~~~~~~l~~iMf~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~~l~Pl  160 (406)
                      +++.+|++|++++|+++++++|+..|+.+.++ +.++++.++++||.+|++++.+|+++.++||+.+..++++|++++|+
T Consensus        10 ~~~~~~l~~~~~l~i~~~~~lg~~~P~~~~~~-~~~i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~vi~Pl   88 (332)
T 3zux_A           10 SKISSFIGKTFSLWAALFAAAAFFAPDTFKWA-GPYIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPA   88 (332)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHHHHCGGGTGGG-GGGHHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcchhhhhh-HHHHHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence            36899999999999999999999999999887 57788999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCChHHHHHHHHHhcCchhhHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccChHHHH
Q 037575          161 LGVLIAKAFGIPQIFYAGFVLTACVSGAQLSSYASFLSKGDVAVSILLSSSTTIASVLITPLLTGLLIGSVIPVDAVAMS  240 (406)
Q Consensus       161 la~~l~~~~~l~~~~~~GlvL~a~~P~~~~s~v~t~~~gGd~ala~~~~~~stlls~~~~Pl~l~ll~g~~v~vd~~~l~  240 (406)
                      +++++++.++++++++.|+++++||||++.|++||+++|||.++++.+++++|+++++++|+++.++.|+.+++|+.+++
T Consensus        89 l~~~l~~~~~l~~~~~~Glil~~~~P~~~~s~v~t~~a~Gd~~la~~~~~~stll~~~~~Pl~~~l~~g~~~~v~~~~~~  168 (332)
T 3zux_A           89 TAWCLSKLLNLPAEIAVGVILVGCCPGGTASNVMTYLARGNVALSVAVTSVSTLTSPLLTPAIFLMLAGEMLEIQAAGML  168 (332)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHSCCCTHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred             HHHHHHHHhCCChHHHHHHHHHhcCCchhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHhHHHhHhcccchHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 037575          241 KSILQVVLVPVALGLGLNTYAKPVVSFLRPVMPFVAMICTSLCIGSPLAINRSQILSIEGLQLVLPVLTFHAVAFAVGYW  320 (406)
Q Consensus       241 ~~ll~~vllPl~lG~llr~~~p~~~~~i~~~l~~is~l~lllii~~~~~~n~~~i~~~~~~~i~~~~lll~~~~f~lG~~  320 (406)
                      .+++.++++|+++|+++|++.|++.+++++.++.++..+++++++..++.+.+.+.+. +..++..+++++.++|.+||+
T Consensus       169 ~~l~~~vllP~~lG~l~r~~~~~~~~~~~~~l~~~s~~~illiv~~~~~~~~~~~~~~-~~~v~~~~~l~~~~~~~lg~~  247 (332)
T 3zux_A          169 MSIVKMVLLPIVLGLIVHKVLGSKTEKLTDALPLVSVAAIVLIIGAVVGASKGKIMES-GLLIFAVVVLHNGIGYLLGFF  247 (332)
T ss_dssp             HHHHHHTHHHHHHHHHHHHHHGGGGHHHHTTHHHHHHHHHHHHHHHHHHHTHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHhhhHHHHhc-cHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999998888888877764 556777888999999999999


Q ss_pred             HhcccCCCCCccceeeeeeecccccHHHHHHHHHHhc--CCcccHHHHHHHHHHHHHHHHHHHHHhcCccccchhhcccc
Q 037575          321 VSKIPSWRQGEEVSRTISLCTGMQSSTLAGLLATQFL--GSSQAVPPACSVIAMAIMGLCLASFWGSGSRIRDLTNILNW  398 (406)
Q Consensus       321 l~r~~~~~~~~~~~~a~~~~~g~rN~~Lai~lA~~~f--~~~~alp~~~y~v~q~i~~~~la~~~~~~~~~~~~~~~~~~  398 (406)
                      ++|+  +|++++|++|+++|+|+||+++|+++|..+|  +|..++|+++|+++|++.+++++.+|+||+++++.+.+-++
T Consensus       248 ~~r~--~~~~~~~~~ti~~e~G~qNs~lai~lA~~~F~~~p~~alp~~iy~~~q~i~~~~la~~~~~~~~~~~~~~~~~~  325 (332)
T 3zux_A          248 AAKW--TGLPYDAQKALTIEVGMQNSGLAAALAAAHFAAAPVVAVPGALFSVWHNISGSLLATYWAAKAGKHKKPLDRAG  325 (332)
T ss_dssp             HHHH--TTCCHHHHHHHHHHHHCCCHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHHHHHHHHHHHHC-----------
T ss_pred             HHHH--hCCCHhHhhhhhhhhhhccHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHcCccccCCchhhcc
Confidence            9999  8999999999999999999999999999999  56789999999999999999999999999988888777777


Q ss_pred             CCcCc
Q 037575          399 HSSSA  403 (406)
Q Consensus       399 ~~~~~  403 (406)
                      +|+-+
T Consensus       326 ~~~~~  330 (332)
T 3zux_A          326 SENLY  330 (332)
T ss_dssp             -----
T ss_pred             ccccc
Confidence            77643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00