Citrus Sinensis ID: 037584

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110----
Protein Sequence
MKGRCLYLALFLSTLLLATGARTDAALVGGWKPIEDPNDPHVIEIGQFAVVEYNKQSKMELKFQSVEKGETQVVSGTNYRLVVAAQDGTATNKYQAVVWENAKQIKKLTSFHRL
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHcccccccccccEEEccccccHHHHHHHHHHHHHHHHcccccEEEEEEEEEEEEEEccEEEEEEEEEEEcccccEEEEEEEEEcccEEEEEEEEEc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHcccccccccccEEccccccHHHHHHHHHHHHHHHHHccccEEEEEEEEEEEEEEEcEEEEEEEEEEcccccEEEEEEEEEcccccHEHEEcccc
Coil and Loop (DISEMBL)
MKGRCLYLALFLSTLLLATGArtdaalvggwkpiedpndphvieIGQFAVVEYNKQskmelkfqsvekgetqvvsGTNYRLVVAAqdgtatnkYQAVVWENAKQIKKLTSFHRL
Flexible Loop (DISEMBL)
MKGRCLYLALFLSTLLLATGARTDAALVGGWKPIEDPNDPHVIEIGQFAVVEYNKQSKMELKfqsvekgetqvvsgTNYRLVVAAQDGTATNKYQAVVWENAKQikkltsfhrl
Low Complexity Region (SEG)
MKGRClylalflstlllATGARTDAALVGGWKPIEDPNDPHVIEIGQFAVVEYNKQSKMELKFQSVEKGETQVVSGTNYRLVVAAQDGTATNKYQAVVWENAKQIKKLTSFHRL
Disordered region (IsUnstruct)
***RCLYLALFLSTLLLATGARTDAALVGGWKPIEDPNDPHVIEIGQFAVVEYNKQSKMELKFQSVEKGETQVVSGTNYRLVVAAQDGTATNKYQAVVWENAKQIK********
Disordered Region (DISOPRED)
**GRCLYLALFLSTLLLATGARTDAALVGGWKPIEDPNDPHVIEIGQFAVVEYNKQSKMELKFQSVEKGETQVVSGTNYRLVVAAQDGTATNKYQAVVWENAKQIKKLTSFHRL
Disordered Region (DISEMBL)
MKGRCLYLALFLSTLLLATGARTDAALVGGWKPIEDPNDPHVIEIGQFAVVEYNKQSKMELKFQSVEKGETQVVSGTNYRLVVAAQDGTATNKYQAVVWENAKQIKKLTSFHRL
Disordered Region (DISPRO)
*KGRCLYLALFLSTLLLATGARTDAALVGGWKPIEDPNDPHVIEIGQFAVVEYNKQSKMELKFQSVEKGETQVVSGTNYRLVVAAQDGTATNKYQAVVWENAKQIKKLTSFHR*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKGRCLYLALFLSTLLLATGARTDAALVGGWKPIEDPNDPHVIEIGQFAVVEYNKQSKMELKFQSVEKGETQVVSGTNYRLVVAAQDGTATNKYQAVVWENAKQIKKLTSFHRL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	114	2.2.26 [Sep-21-2011]
Q41916	122	Cysteine proteinase inhib	yes	no	0.771	0.721	0.588	2e-22
Q6TPK4	116	Cysteine proteinase inhib	N/A	no	0.754	0.741	0.528	2e-20
Q10J94	123	Cysteine proteinase inhib	yes	no	0.807	0.747	0.5	8e-17
Q10Q46	113	Cysteine proteinase inhib	no	no	0.736	0.743	0.454	2e-12
Q10Q47	117	Putative cysteine protein	no	no	0.728	0.709	0.443	1e-11
Q84WT8	117	Cysteine proteinase inhib	no	no	0.728	0.709	0.470	3e-11
P09229	140	Cysteine proteinase inhib	no	no	0.745	0.607	0.348	1e-09
Q945Q1	101	Cysteine proteinase inhib	no	no	0.754	0.851	0.362	4e-09
P31726	135	Cystatin-1 OS=Zea mays GN	N/A	no	0.745	0.629	0.379	4e-08
Q9LEI7	107	Cysteine proteinase inhib	N/A	no	0.692	0.738	0.35	1e-06

>sp|Q41916|CYT5_ARATH Cysteine proteinase inhibitor 5 OS=Arabidopsis thaliana GN=CYS5 PE=2 SV=2

 Score =  104 bits (260), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 53/90 (58%), Positives = 65/90 (72%), Gaps = 2/90 (2%)

Query: 25  AALVGGWKPIEDPNDPHVIEIGQFAVVEYNKQSKMELKFQSVEKGETQVVSGTNYRLVVA 84
           AA VGGW PI +  DP V+EIG+FAV EYNK+S+  LKF++V  GETQVVSGTNYRL VA
Sbjct: 25  AARVGGWSPISNVTDPQVVEIGEFAVSEYNKRSESGLKFETVVSGETQVVSGTNYRLKVA 84

Query: 85  AQDGTATNK-YQAVVWENA-KQIKKLTSFH 112
           A DG   +K Y A+VW+    + + LTSF 
Sbjct: 85  ANDGDGVSKNYLAIVWDKPWMKFRNLTSFE 114

Specific inhibitor of cysteine proteinases. Probably involved in the regulation of endogenous processes and in defense against pests and pathogens.
Arabidopsis thaliana (taxid: 3702)

>sp|Q6TPK4|CYT1_ACTDE Cysteine proteinase inhibitor 1 OS=Actinidia deliciosa PE=1 SV=1

 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 46/87 (52%), Positives = 62/87 (71%), Gaps = 1/87 (1%)

Query: 29  GGWKPIEDPNDPHVIEIGQFAVVEYNKQSKMELKFQSVEKGETQVVSGTNYRLVVAAQDG 88
           GGW+PIE  N   V ++ QFAV E+NKQ+  EL++QSV +G TQVV+GTNYRLV+AA+DG
Sbjct: 30  GGWRPIESLNSAEVQDVAQFAVSEHNKQANDELQYQSVVRGYTQVVAGTNYRLVIAAKDG 89

Query: 89  TATNKYQAVVWENA-KQIKKLTSFHRL 114
                Y+AVVW+      + LTSF ++
Sbjct: 90  AVVGNYEAVVWDKPWMHFRNLTSFRKV 116

Specific inhibitor of papain family cysteine proteinases. Inhibits papain, chymopapain, bromelain, ficin, human cathepsins B, H and L, actinidain and house dustmite endopeptidase 1, but does not inhibit human bleomycin hydrolase. Inhibits papain with an IC(50) of 2.47 nM. Does not inhibit cysteine proteinases belonging to other families including clostripain, streptopain and calpain.

Actinidia deliciosa (taxid: 3627)

>sp|Q10J94|CYT8_ORYSJ Cysteine proteinase inhibitor 8 OS=Oryza sativa subsp. japonica GN=Os03g0429000 PE=2 SV=1

 Score = 85.5 bits (210), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 47/94 (50%), Positives = 58/94 (61%), Gaps = 2/94 (2%)

Query: 20  GARTDAALVGGWKPIEDPNDPHVIEIGQFAVVEYNKQSKMELKFQSVEKGETQVVSGTNY 79
           G R    LVGGW PI D  DPH+ E+G +AV  +   S   L+F+ V  GE QVVSG NY
Sbjct: 24  GNRGHGPLVGGWSPITDVGDPHIQELGGWAVERHASLSSDGLRFRRVTSGEQQVVSGMNY 83

Query: 80  RLVVAAQD-GTATNKYQAVVWENA-KQIKKLTSF 111
           RLVV+A D   AT  Y AVV+E +    ++LTSF
Sbjct: 84  RLVVSASDPAGATASYVAVVYEQSWTNTRQLTSF 117

Specific inhibitor of cysteine proteinases. Probably involved in the regulation of endogenous processes and in defense against pests and pathogens.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q10Q46|CYT6_ORYSJ Cysteine proteinase inhibitor 6 OS=Oryza sativa subsp. japonica GN=Os03g0210200 PE=3 SV=1

 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/88 (45%), Positives = 54/88 (61%), Gaps = 4/88 (4%)

Query: 30  GWKPIEDPNDPHVIEIGQFAVVEYNKQSKM-ELKFQSVEKGETQVVSGTNYRLVV--AAQ 86
           GW PI++ +DPH+ E+G++A+ E N+ S   EL F  V  GE QVVSG NYRL +  A+ 
Sbjct: 22  GWSPIKNIDDPHIQELGRWAITENNRVSPSDELTFHRVTGGEQQVVSGMNYRLEIEAASG 81

Query: 87  DGTATNKYQAVVWENA-KQIKKLTSFHR 113
            G  T  Y AVV+E      +KL SF +
Sbjct: 82  GGDVTGSYGAVVFEQEWSNTRKLISFDK 109

Specific inhibitor of cysteine proteinases. Probably involved in the regulation of endogenous processes and in defense against pests and pathogens.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q10Q47|CYT7_ORYSJ Putative cysteine proteinase inhibitor 7 OS=Oryza sativa subsp. japonica GN=Os03g0210100 PE=3 SV=1

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/88 (44%), Positives = 56/88 (63%), Gaps = 5/88 (5%)

Query: 28  VGGWKPIEDPNDPHVIEIGQFAVVEYNKQ-SKMELKFQSVEKGETQVVSGTNYRLVV-AA 85
           VG W+P+ D NDPHV E+G++AV E ++  +   L F+ V  GE QVV+G NYRL + A+
Sbjct: 27  VGSWEPV-DINDPHVQELGRWAVAEEDRGVAAGGLTFERVTDGEKQVVAGVNYRLTLEAS 85

Query: 86  QDGTATNKYQAVVWENAKQ--IKKLTSF 111
             G    +Y+AVV+E   +   +KL SF
Sbjct: 86  SSGAKDGRYEAVVYEQDPRSNARKLVSF 113

Specific inhibitor of cysteine proteinases. Probably involved in the regulation of endogenous processes and in defense against pests and pathogens.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q84WT8|CYT4_ARATH Cysteine proteinase inhibitor 4 OS=Arabidopsis thaliana GN=CYS4 PE=3 SV=2

 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 40/85 (47%), Positives = 55/85 (64%), Gaps = 2/85 (2%)

Query: 32  KPIEDPNDPHVIEIGQFAVVEYNKQSKMELKFQSVEKGETQVVSGTNYRLVVAAQDGTAT 91
           KPI++ +DP V+ + ++A+ E+NK+SK +L F  V +G TQVVSGT Y L +AA+DG   
Sbjct: 33  KPIKNVSDPDVVAVAKYAIEEHNKESKEKLVFVKVVEGTTQVVSGTKYDLKIAAKDGGGK 92

Query: 92  NK-YQAVVWENA-KQIKKLTSFHRL 114
            K Y+AVV E      K L SF  L
Sbjct: 93  IKNYEAVVVEKLWLHSKSLESFKAL 117

Specific inhibitor of cysteine proteinases. Probably involved in the regulation of endogenous processes and in defense against pests and pathogens.

Arabidopsis thaliana (taxid: 3702)

>sp|P09229|CYT1_ORYSJ Cysteine proteinase inhibitor 1 OS=Oryza sativa subsp. japonica GN=Os01g0803200 PE=1 SV=2

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 53/86 (61%), Gaps = 1/86 (1%)

Query: 27  LVGGWKPIEDPNDPHVIEIGQFAVVEYNKQSKMELKFQSVEKGETQVVSGTNYRLVVAAQ 86
           ++GG +P+ + ND H++++ +FAV E+NK++   L+F+ +   + QVV+GT Y   +  +
Sbjct: 46  VLGGVEPVGNENDLHLVDLARFAVTEHNKKANSLLEFEKLVSVKQQVVAGTLYYFTIEVK 105

Query: 87  DGTATNKYQAVVWENA-KQIKKLTSF 111
           +G A   Y+A VWE      K+L  F
Sbjct: 106 EGDAKKLYEAKVWEKPWMDFKELQEF 131

There are two distinct cystatins in rice seeds (Oryzacystatin-1 and -2) with different specificities against cysteine proteinases. May be involved in the control of germination by inhibition of endogenous cysteine proteinases. May play a role in defense by inhibiting exogenous proteases such as those present in digestive tracks of insects and nematodes.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q945Q1|CYT1_ARATH Cysteine proteinase inhibitor 1 OS=Arabidopsis thaliana GN=CYS1 PE=1 SV=2

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 5/91 (5%)

Query: 27  LVGGWKPIE-DPNDPHVIEIGQFAVVEYNKQSKMELKFQSVEKGETQVVSGTNYRLVVAA 85
           +VGG + I+ + ND  V  + +FAV E+NK   + L+++ +   +TQVV+GT + L V  
Sbjct: 9   IVGGVRDIDANANDLQVESLARFAVDEHNKNENLTLEYKRLLGAKTQVVAGTMHHLTVEV 68

Query: 86  QDGTATNKYQAVV----WENAKQIKKLTSFH 112
            DG     Y+A V    WEN KQ++     H
Sbjct: 69  ADGETNKVYEAKVLEKAWENLKQLESFNHLH 99

Involved in suppression of hypersensitive cell death activated by either avirulent pathogen or oxidative stress.

Arabidopsis thaliana (taxid: 3702)

>sp|P31726|CYT1_MAIZE Cystatin-1 OS=Zea mays GN=RAMDAZC7 PE=2 SV=1

 Score = 57.0 bits (136), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 51/87 (58%), Gaps = 2/87 (2%)

Query: 27  LVGGWKPIE-DPNDPHVIEIGQFAVVEYNKQSKMELKFQSVEKGETQVVSGTNYRLVVAA 85
           L GG K +  + ND  + E+ +FAV E+N+++   L F+ + K +TQVV+GT Y L +  
Sbjct: 40  LAGGIKDVPANENDLQLQELARFAVNEHNQKANALLGFEKLVKAKTQVVAGTMYYLTIEV 99

Query: 86  QDGTATNKYQAVVWENA-KQIKKLTSF 111
           +DG     Y+A VWE   +  K+L  F
Sbjct: 100 KDGEVKKLYEAKVWEKPWENFKQLQEF 126

Zea mays (taxid: 4577)

>sp|Q9LEI7|CYT1_HORVU Cysteine proteinase inhibitor OS=Hordeum vulgare GN=ICY PE=1 SV=1

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 1/80 (1%)

Query: 33  PIEDPNDPHVIEIGQFAVVEYNKQSKMELKFQSVEKGETQVVSGTNYRLVVAAQDGTATN 92
           P    ND   IE+ +FAV E+N ++   L+F+ + K   QVV+G  +   +  ++G A  
Sbjct: 24  PAGRENDLETIELARFAVAEHNAKANALLEFEKLVKVRQQVVAGCMHYFTIEVKEGGAKK 83

Query: 93  KYQAVVWENA-KQIKKLTSF 111
            Y+A VWE A +  K+L  F
Sbjct: 84  LYEAKVWEKAWENFKQLQEF 103

Inhibits papain, ficin, cathepsin B and, to a lesser extent, chymopapain, but is inactive against bromelain. Inhibits the growth of pathogenic fungi. Regulated by the DOF transcription factors SAD (activator) and BPBF (repressor).

Hordeum vulgare (taxid: 4513)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	114
11596186	118	cystatin-like protein [Citrus x paradisi	0.956	0.923	0.642	2e-32
297741794	146	unnamed protein product [Vitis vinifera]	0.815	0.636	0.631	4e-25
359495539	118	PREDICTED: cysteine proteinase inhibitor	0.815	0.788	0.631	7e-25
147854421	118	hypothetical protein VITISV_013491 [Viti	0.815	0.788	0.631	9e-25
225469984	112	PREDICTED: cysteine proteinase inhibitor	0.763	0.776	0.620	2e-23
357447931	117	Cysteine proteinase inhibitor [Medicago	0.912	0.888	0.552	2e-22
297790905	122	hypothetical protein ARALYDRAFT_494218 [	0.771	0.721	0.6	2e-22
388510172	117	unknown [Medicago truncatula]	0.912	0.888	0.552	2e-22
89257481	120	cystatin domain containing protein [Bras	0.736	0.7	0.571	3e-21
300432981	120	phytocystatin 5-3 [Brassica rapa subsp.	0.885	0.841	0.504	3e-21

>gi|11596186|gb|AAG38521.1|AF283536_1 cystatin-like protein [Citrus x paradisi]

 Score =  142 bits (359), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 72/112 (64%), Positives = 85/112 (75%), Gaps = 3/112 (2%)

Query: 5   CLYLALFLSTL-LLATGARTDAALVGGWKPIEDPNDPHVIEIGQFAVVEYNKQSKMELKF 63
           C  + LFLS + LLA G R   ALVGGWKPIEDP + HV+EIGQFAV EYNKQSK  LKF
Sbjct: 6   CCLIVLFLSVVPLLAAGDR-KGALVGGWKPIEDPKEKHVMEIGQFAVTEYNKQSKSALKF 64

Query: 64  QSVEKGETQVVSGTNYRLVVAAQDGTATNKYQAVVWENA-KQIKKLTSFHRL 114
           +SVEKGETQVVSGTNYRL++  +DG +T K++AVVWE   +  K LTSF  +
Sbjct: 65  ESVEKGETQVVSGTNYRLILVVKDGPSTKKFEAVVWEKPWEHFKSLTSFKPM 116

Source: Citrus x paradisi

Species: Citrus x paradisi

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741794|emb|CBI33099.3| unnamed protein product [Vitis vinifera]

 Score =  118 bits (296), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 60/95 (63%), Positives = 73/95 (76%), Gaps = 2/95 (2%)

Query: 21  ARTDAALVGGWKPIEDPNDPHVIEIGQFAVVEYNKQSKMELKFQSVEKGETQVVSGTNYR 80
           ART+A L GGW+PI++ +DP V EIG+FAV E+NKQ+   LKFQSV  GETQVVSGTNYR
Sbjct: 53  ARTEA-LAGGWRPIKNISDPRVQEIGEFAVTEHNKQATESLKFQSVVSGETQVVSGTNYR 111

Query: 81  LVVAAQDGTATNKYQAVVWENA-KQIKKLTSFHRL 114
           LVV A+DG  +NKY+AVVWE      + LTSF R+
Sbjct: 112 LVVVAEDGGVSNKYEAVVWEKPWMGFRNLTSFTRV 146

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495539|ref|XP_003635016.1| PREDICTED: cysteine proteinase inhibitor 1-like [Vitis vinifera]

 Score =  117 bits (294), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 60/95 (63%), Positives = 73/95 (76%), Gaps = 2/95 (2%)

Query: 21  ARTDAALVGGWKPIEDPNDPHVIEIGQFAVVEYNKQSKMELKFQSVEKGETQVVSGTNYR 80
           ART+A L GGW+PI++ +DP V EIG+FAV E+NKQ+   LKFQSV  GETQVVSGTNYR
Sbjct: 25  ARTEA-LAGGWRPIKNISDPRVQEIGEFAVTEHNKQATESLKFQSVVSGETQVVSGTNYR 83

Query: 81  LVVAAQDGTATNKYQAVVWENA-KQIKKLTSFHRL 114
           LVV A+DG  +NKY+AVVWE      + LTSF R+
Sbjct: 84  LVVVAEDGGVSNKYEAVVWEKPWMGFRNLTSFTRV 118

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147854421|emb|CAN82794.1| hypothetical protein VITISV_013491 [Vitis vinifera]

 Score =  117 bits (293), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 60/95 (63%), Positives = 73/95 (76%), Gaps = 2/95 (2%)

Query: 21  ARTDAALVGGWKPIEDPNDPHVIEIGQFAVVEYNKQSKMELKFQSVEKGETQVVSGTNYR 80
           ART+A L GGW+PI++ +DP V EIG+FAV E+NKQ+   LKFQSV  GETQVVSGTNYR
Sbjct: 25  ARTEA-LAGGWRPIKNISDPXVQEIGEFAVTEHNKQAXESLKFQSVVSGETQVVSGTNYR 83

Query: 81  LVVAAQDGTATNKYQAVVWENA-KQIKKLTSFHRL 114
           LVV A+DG  +NKY+AVVWE      + LTSF R+
Sbjct: 84  LVVVAEDGGVSNKYEAVVWEKPWMGFRNLTSFTRV 118

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225469984|ref|XP_002277752.1| PREDICTED: cysteine proteinase inhibitor 5-like [Vitis vinifera]

 Score =  112 bits (281), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 54/87 (62%), Positives = 67/87 (77%)

Query: 26  ALVGGWKPIEDPNDPHVIEIGQFAVVEYNKQSKMELKFQSVEKGETQVVSGTNYRLVVAA 85
           AL+GGW PIED  +PHV EIG+FAV  +NK +  +LKFQSV KG+TQVV+GTNYRL V A
Sbjct: 24  ALLGGWSPIEDVKNPHVQEIGKFAVEAHNKLTATKLKFQSVIKGQTQVVAGTNYRLTVMA 83

Query: 86  QDGTATNKYQAVVWENAKQIKKLTSFH 112
           ++G A+ KY+AVVWE     K+LTSF 
Sbjct: 84  KNGAASKKYEAVVWEKLDGTKQLTSFQ 110

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357447931|ref|XP_003594241.1| Cysteine proteinase inhibitor [Medicago truncatula] gi|355483289|gb|AES64492.1| Cysteine proteinase inhibitor [Medicago truncatula]

 Score =  109 bits (273), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 58/105 (55%), Positives = 72/105 (68%), Gaps = 1/105 (0%)

Query: 8   LALFLSTLLLATGARTDAALVGGWKPIEDPNDPHVIEIGQFAVVEYNKQSKMELKFQSVE 67
             LFLS + + T +    ALVGGW PI++  DP V+EI +FAV EY KQS  +L F  V 
Sbjct: 9   FVLFLSVVSVFTVSDGKDALVGGWTPIKNVKDPQVVEIAKFAVTEYGKQSGSKLSFVKVI 68

Query: 68  KGETQVVSGTNYRLVVAAQDGTATNKYQAVVWENA-KQIKKLTSF 111
           KGETQVVSGTNYRLV+AA+  +AT  Y+A+VWE     +K LTSF
Sbjct: 69  KGETQVVSGTNYRLVLAAKVVSATKNYEALVWEKPWLHLKNLTSF 113

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297790905|ref|XP_002863337.1| hypothetical protein ARALYDRAFT_494218 [Arabidopsis lyrata subsp. lyrata] gi|297309172|gb|EFH39596.1| hypothetical protein ARALYDRAFT_494218 [Arabidopsis lyrata subsp. lyrata]

 Score =  109 bits (273), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 54/90 (60%), Positives = 67/90 (74%), Gaps = 2/90 (2%)

Query: 25  AALVGGWKPIEDPNDPHVIEIGQFAVVEYNKQSKMELKFQSVEKGETQVVSGTNYRLVVA 84
           AA VGGW PI +  DPHV+EIG+FAV EYNK+S+  LKF++V +GETQVV+GTNYRL VA
Sbjct: 25  AARVGGWSPISNVTDPHVVEIGEFAVSEYNKRSESGLKFETVVRGETQVVAGTNYRLTVA 84

Query: 85  AQDGTATNK-YQAVVWENA-KQIKKLTSFH 112
           A DG   +K Y A+VWE    + + LTSF 
Sbjct: 85  ANDGEGASKNYLAIVWEKPWMKFRNLTSFE 114

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388510172|gb|AFK43152.1| unknown [Medicago truncatula]

 Score =  109 bits (273), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 58/105 (55%), Positives = 72/105 (68%), Gaps = 1/105 (0%)

Query: 8   LALFLSTLLLATGARTDAALVGGWKPIEDPNDPHVIEIGQFAVVEYNKQSKMELKFQSVE 67
             LFLS + + T +    ALVGGW PI++  DP V+EI +FAV EY KQS  +L F  V 
Sbjct: 9   FVLFLSVVSVFTVSDGKDALVGGWTPIKNVKDPQVVEIAKFAVTEYGKQSGSKLSFVKVI 68

Query: 68  KGETQVVSGTNYRLVVAAQDGTATNKYQAVVWENA-KQIKKLTSF 111
           KGETQVVSGTNYRLV+AA+  +AT  Y+A+VWE     +K LTSF
Sbjct: 69  KGETQVVSGTNYRLVLAAKVVSATKNYEALVWEKPWLHLKNLTSF 113

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|89257481|gb|ABD64972.1| cystatin domain containing protein [Brassica oleracea]

 Score =  105 bits (263), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 52/91 (57%), Positives = 65/91 (71%), Gaps = 7/91 (7%)

Query: 28  VGGWKPIEDPNDPHVIEIGQFAVVEYNKQSKMELKFQSVEKGETQVVSGTNYRLVVAAQD 87
           VGGW+P+ D NDPHV+EIG+F+V EYNKQSK  LKF +V  GE+QVV+G NYRL+VA  D
Sbjct: 26  VGGWRPLSDVNDPHVVEIGKFSVSEYNKQSKAGLKFVAVVSGESQVVAGMNYRLIVAVND 85

Query: 88  GT------ATNKYQAVVWENA-KQIKKLTSF 111
           G       A+  Y+A+VWE A  +   LTSF
Sbjct: 86  GVETAGAGASKNYEAIVWERAWLKSMNLTSF 116

Source: Brassica oleracea

Species: Brassica oleracea

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|300432981|gb|ADK13078.1| phytocystatin 5-3 [Brassica rapa subsp. pekinensis]

 Score =  105 bits (263), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 57/113 (50%), Positives = 74/113 (65%), Gaps = 12/113 (10%)

Query: 6   LYLALFLSTLLLATGARTDAALVGGWKPIEDPNDPHVIEIGQFAVVEYNKQSKMELKFQS 65
           L+LAL L +L +     + AAL GGW PI D  + H++EIG+FAV EYNKQSK  LKF  
Sbjct: 9   LFLALVLCSLYV-----SQAALTGGWSPISDVKNAHIVEIGEFAVSEYNKQSKSGLKFVE 63

Query: 66  VEKGETQVVSGTNYRLVVAAQDGTA------TNKYQAVVWENA-KQIKKLTSF 111
           V  GE+Q+V+G NYRL++AA +G A      + KY+AVVWE    +   LTSF
Sbjct: 64  VVSGESQIVAGMNYRLILAANEGVAIAGNGESKKYEAVVWEKPWLKSMNLTSF 116

Source: Brassica rapa subsp. pekinensis

Species: Brassica rapa

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	114
TAIR|locus:2168973	122	AT5G47550 [Arabidopsis thalian	0.763	0.713	0.595	1.3e-22
UNIPROTKB|Q6TPK4	116	Q6TPK4 "Cysteine proteinase in	0.824	0.810	0.510	8e-21
TAIR|locus:2130709	117	AT4G16500 [Arabidopsis thalian	0.763	0.743	0.460	1.6e-13
TAIR|locus:2177063	101	CYS1 "cystatin-1" [Arabidopsis	0.754	0.851	0.362	2e-10
TAIR|locus:2058515	125	CYSA "cystatin A" [Arabidopsis	0.745	0.68	0.321	9.7e-09
TAIR|locus:2092492	234	CYSB "cystatin B" [Arabidopsis	0.771	0.376	0.333	4.1e-06
UNIPROTKB|E2RJE4	149	CST6 "Uncharacterized protein"	0.649	0.496	0.358	0.00035
TAIR|locus:2175294	232	AT5G05110 [Arabidopsis thalian	0.622	0.306	0.319	0.00091
UNIPROTKB|P01035	148	CST3 "Cystatin-C" [Bos taurus	0.798	0.614	0.372	0.00094

TAIR|locus:2168973 AT5G47550 [Arabidopsis thaliana (taxid:3702)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 53/89 (59%), Positives = 65/89 (73%)

Query:    25 AALVGGWKPIEDPNDPHVIEIGQFAVVEYNKQSKMELKFQSVEKGETQVVSGTNYRLVVA 84
             AA VGGW PI +  DP V+EIG+FAV EYNK+S+  LKF++V  GETQVVSGTNYRL VA
Sbjct:    25 AARVGGWSPISNVTDPQVVEIGEFAVSEYNKRSESGLKFETVVSGETQVVSGTNYRLKVA 84

Query:    85 AQDGTATNK-YQAVVWENA-KQIKKLTSF 111
             A DG   +K Y A+VW+    + + LTSF
Sbjct:    85 ANDGDGVSKNYLAIVWDKPWMKFRNLTSF 113

GO:0004869 "cysteine-type endopeptidase inhibitor activity" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0005618 "cell wall" evidence=IDA

UNIPROTKB|Q6TPK4 Q6TPK4 "Cysteine proteinase inhibitor 1" [Actinidia deliciosa (taxid:3627)]

 Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
 Identities = 49/96 (51%), Positives = 65/96 (67%)

Query:    20 GARTDAALVGGWKPIEDPNDPHVIEIGQFAVVEYNKQSKMELKFQSVEKGETQVVSGTNY 79
             G R   A  GGW+PIE  N   V ++ QFAV E+NKQ+  EL++QSV +G TQVV+GTNY
Sbjct:    22 GGRKLVA-AGGWRPIESLNSAEVQDVAQFAVSEHNKQANDELQYQSVVRGYTQVVAGTNY 80

Query:    80 RLVVAAQDGTATNKYQAVVWENA-KQIKKLTSFHRL 114
             RLV+AA+DG     Y+AVVW+      + LTSF ++
Sbjct:    81 RLVIAAKDGAVVGNYEAVVWDKPWMHFRNLTSFRKV 116

GO:0004869 "cysteine-type endopeptidase inhibitor activity" evidence=IDA

TAIR|locus:2130709 AT4G16500 [Arabidopsis thaliana (taxid:3702)]

 Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
 Identities = 41/89 (46%), Positives = 57/89 (64%)

Query:    28 VGGWKPIEDPNDPHVIEIGQFAVVEYNKQSKMELKFQSVEKGETQVVSGTNYRLVVAAQD 87
             +G  KPI++ +DP V+ + ++A+ E+NK+SK +L F  V +G TQVVSGT Y L +AA+D
Sbjct:    29 LGSRKPIKNVSDPDVVAVAKYAIEEHNKESKEKLVFVKVVEGTTQVVSGTKYDLKIAAKD 88

Query:    88 GTATNK-YQAVVWENA-KQIKKLTSFHRL 114
             G    K Y+AVV E      K L SF  L
Sbjct:    89 GGGKIKNYEAVVVEKLWLHSKSLESFKAL 117

GO:0004869 "cysteine-type endopeptidase inhibitor activity" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0030234 "enzyme regulator activity" evidence=ISS

GO:0005773 "vacuole" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2177063 CYS1 "cystatin-1" [Arabidopsis thaliana (taxid:3702)]

 Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 33/91 (36%), Positives = 51/91 (56%)

Query:    27 LVGGWKPIE-DPNDPHVIEIGQFAVVEYNKQSKMELKFQSVEKGETQVVSGTNYRLVVAA 85
             +VGG + I+ + ND  V  + +FAV E+NK   + L+++ +   +TQVV+GT + L V  
Sbjct:     9 IVGGVRDIDANANDLQVESLARFAVDEHNKNENLTLEYKRLLGAKTQVVAGTMHHLTVEV 68

Query:    86 QDGTATNKYQAVV----WENAKQIKKLTSFH 112
              DG     Y+A V    WEN KQ++     H
Sbjct:    69 ADGETNKVYEAKVLEKAWENLKQLESFNHLH 99

GO:0004869 "cysteine-type endopeptidase inhibitor activity" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009611 "response to wounding" evidence=IEP

GO:0034605 "cellular response to heat" evidence=IEP

GO:0042631 "cellular response to water deprivation" evidence=IEP

GO:0070417 "cellular response to cold" evidence=IEP

GO:0005829 "cytosol" evidence=IDA

GO:0006970 "response to osmotic stress" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2058515 CYSA "cystatin A" [Arabidopsis thaliana (taxid:3702)]

 Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
 Identities = 28/87 (32%), Positives = 47/87 (54%)

Query:    27 LVGGWKPIE-DPNDPHVIEIGQFAVVEYNKQSKMELKFQSVEKGETQVVSGTNYRLVVAA 85
             ++GG   +  + N   +  + +FA+ E+NKQ    L+F+ + K   QVV+GT Y L + A
Sbjct:    34 MLGGVHDLRGNQNSGEIESLARFAIQEHNKQQNKILEFKKIVKAREQVVAGTMYHLTLEA 93

Query:    86 QDGTATNKYQAVVWENA-KQIKKLTSF 111
             ++G  T  ++A VW       K+L  F
Sbjct:    94 KEGDQTKNFEAKVWVKPWMNFKQLQEF 120

GO:0004869 "cysteine-type endopeptidase inhibitor activity" evidence=IEA;ISS;IDA

GO:0005576 "extracellular region" evidence=ISM

GO:0006972 "hyperosmotic response" evidence=IMP

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0009409 "response to cold" evidence=IMP

GO:0009414 "response to water deprivation" evidence=IMP

TAIR|locus:2092492 CYSB "cystatin B" [Arabidopsis thaliana (taxid:3702)]

 Score = 110 (43.8 bits), Expect = 4.1e-06, P = 4.1e-06
 Identities = 30/90 (33%), Positives = 45/90 (50%)

Query:    24 DAALVGGWKPIE-DPNDPHVIEIGQFAVVEYNKQSKMELKFQSVEKGETQVVSGTNYRLV 82
             + ALVGG   +  + N   V  + +FAV E+NK+    L+F  V K + QVV+GT + L 
Sbjct:    33 EMALVGGVGDVPANQNSGEVESLARFAVDEHNKKENALLEFARVVKAKEQVVAGTLHHLT 92

Query:    83 VAAQDGTATNKYQAVVWENA-KQIKKLTSF 111
             +   +      Y+A VW       K+L  F
Sbjct:    93 LEILEAGQKKLYEAKVWVKPWLNFKELQEF 122

GO:0004869 "cysteine-type endopeptidase inhibitor activity" evidence=IEA;ISS;IDA

GO:0005576 "extracellular region" evidence=ISM

GO:0006972 "hyperosmotic response" evidence=IMP

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0009409 "response to cold" evidence=IMP

GO:0009414 "response to water deprivation" evidence=IMP

GO:0050897 "cobalt ion binding" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

UNIPROTKB|E2RJE4 CST6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 88 (36.0 bits), Expect = 0.00035, P = 0.00035
 Identities = 28/78 (35%), Positives = 38/78 (48%)

Query:    21 ARTDAALVGGWKPIEDPNDPHVIEIGQFAVVEYNKQSKMELKFQ--SVEKGETQVVSGTN 78
             AR    LVGG   +  P+DP V +  Q AV  YN  S     F+  ++ K ++Q+V+G  
Sbjct:    28 ARPGNHLVGGRVDLS-PSDPQVQKAAQAAVASYNMGSNSLYYFRDTNILKAQSQLVAGVK 86

Query:    79 YRLVVAAQDGTATNKYQA 96
             Y L V     TA  K  A
Sbjct:    87 YYLTVEL-GSTACRKNMA 103

GO:0008544 "epidermis development" evidence=IEA

GO:0001533 "cornified envelope" evidence=IEA

GO:0004869 "cysteine-type endopeptidase inhibitor activity" evidence=IEA

TAIR|locus:2175294 AT5G05110 [Arabidopsis thaliana (taxid:3702)]

 Score = 89 (36.4 bits), Expect = 0.00091, P = 0.00091
 Identities = 23/72 (31%), Positives = 34/72 (47%)

Query:    44 EIGQFAVVEYNKQSKMELKFQSVEKGETQVVSGTNYRLVVAAQDGTATNKYQAVVWENA- 102
             +I  FAV E+N++    L+   V K   QVV+G  YRL +   +      Y+A VW    
Sbjct:    63 DIALFAVQEHNRRENAVLELARVLKATEQVVAGKLYRLTLEVIEAGEKKIYEAKVWVKPW 122

Query:   103 KQIKKLTSFHRL 114
                K+L  F  +
Sbjct:   123 MNFKQLQEFKNI 134

GO:0004869 "cysteine-type endopeptidase inhibitor activity" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

UNIPROTKB|P01035 CST3 "Cystatin-C" [Bos taurus (taxid:9913)]

 Score = 84 (34.6 bits), Expect = 0.00094, P = 0.00094
 Identities = 38/102 (37%), Positives = 48/102 (47%)

Query:    18 ATGARTDAALVGGWKPIEDPNDPHVIEIGQFAVVEYNKQSK--MELKFQSVEKGETQVVS 75
             A G R    L+GG     D N+  V E   FAV E+NK+S    + +   V +   QVVS
Sbjct:    30 AQGPRK-GRLLGGLMEA-DVNEEGVQEALSFAVSEFNKRSNDAYQSRVVRVVRARKQVVS 87

Query:    76 GTNYRLVVAAQDGTATNKYQAVV----WENAKQIK--KLTSF 111
             G NY L V     T T K QA +    + N   +K  KL SF
Sbjct:    88 GMNYFLDVELGRTTCT-KSQANLDSCPFHNQPHLKREKLCSF 128


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.129   0.376    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      114       102   0.00091  102 3  11 23  0.44    30
                                                     29  0.48    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  551 (59 KB)
  Total size of DFA:  114 KB (2076 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.35u 0.16s 10.51t   Elapsed:  00:00:01
  Total cpu time:  10.36u 0.16s 10.52t   Elapsed:  00:00:01
  Start:  Thu May  9 13:48:09 2013   End:  Thu May  9 13:48:10 2013

GO:0005576 "extracellular region" evidence=IEA

GO:0004869 "cysteine-type endopeptidase inhibitor activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q41916	CYT5_ARATH	No assigned EC number	0.5888	0.7719	0.7213	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00013094001 SubName- Full=Chromosome undetermined scaffold_435, whole genome shotgun sequence; Flags- Fragment; (140 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	114
cd00042	105	cd00042, CY, Cystatin-like domain; Cystatins are a	6e-13
smart00043	107	smart00043, CY, Cystatin-like domain	2e-12
pfam00031	92	pfam00031, Cystatin, Cystatin domain	9e-10

>gnl|CDD|238002 cd00042, CY, Cystatin-like domain; Cystatins are a family of cysteine protease inhibitors that occur mainly as single domain proteins

 Score = 59.4 bits (144), Expect = 6e-13
 Identities = 29/64 (45%), Positives = 36/64 (56%), Gaps = 2/64 (3%)

Query: 29 GGWKPIEDPNDPHVIEIGQFAVVEYNKQS-KMELKFQSVEKGETQVVSGTNYRLVVAAQD 87
          GG   I   NDP V E+  FAV EYNK+S    L+F  V   ++QVV+GTNY + V A D
Sbjct: 1  GGPSDI-PANDPEVQELADFAVAEYNKKSNDKYLEFFKVLSAKSQVVAGTNYYITVEAGD 59

Query: 88 GTAT 91
              
Sbjct: 60 TNCK 63

However some extracellular proteins such as kininogen, His-rich glycoprotein and fetuin also contain these domains. Length = 105

>gnl|CDD|214484 smart00043, CY, Cystatin-like domain

 Score = 58.2 bits (141), Expect = 2e-12
 Identities = 32/78 (41%), Positives = 41/78 (52%), Gaps = 5/78 (6%)

Query: 26  ALVGGWKPIEDPNDPHVIEIGQFAVVEYNKQS--KMELKFQSVEKGETQVVSGTNYRLVV 83
             +GG   +  PNDP V E   FAV EYNK+S  K EL+   V   ++QVV+GTNY L V
Sbjct: 1   LCLGGPSDV-PPNDPEVQEAADFAVAEYNKKSNDKYELRVIKVVSAKSQVVAGTNYYLKV 59

Query: 84  AAQDGTATNKYQAVVWEN 101
              +        +V  EN
Sbjct: 60  EVGETNCKK--LSVDLEN 75

Cystatins are a family of cysteine protease inhibitors that occur mainly as single domain proteins. However some extracellular proteins such as kininogen, His-rich glycoprotein and fetuin also contain these domains. Length = 107

>gnl|CDD|215667 pfam00031, Cystatin, Cystatin domain

 Score = 51.1 bits (123), Expect = 9e-10
 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 5/82 (6%)

Query: 29  GGWKPIEDPNDPHVIEIGQFAVVEYNKQSKME-LKFQSVEKGETQVVSGTNYRLVVAAQD 87
           GG  P  + NDP V E   FA+ +YN +S     +   V + ++QVV+G NY + V   +
Sbjct: 1   GGLSPA-NDNDPEVQEALDFALAKYNAKSNNYYFELVEVLRAKSQVVAGMNYYIKVEVGE 59

Query: 88  GTAT---NKYQAVVWENAKQIK 106
              +      +     + KQ  
Sbjct: 60  TNCSKSKKDLEDCPLLDEKQEG 81

Very diverse family. Attempts to define separate sub-families failed. Typically, either the N-terminal or C-terminal end is very divergent. But splitting into two domains would make very short families. pfam00666 are related to this family but have not been included. Length = 92

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	114
cd00042	105	CY Substituted updates: Jan 30, 2002	99.87
smart00043	107	CY Cystatin-like domain. Cystatins are a family of	99.85
PF00031	94	Cystatin: Cystatin domain; InterPro: IPR000010 Pep	99.8
PF07430	202	PP1: Phloem filament protein PP1; InterPro: IPR009	99.64
TIGR01638	92	Atha_cystat_rel Arabidopsis thaliana cystatin-rela	99.02
PF07430	202	PP1: Phloem filament protein PP1; InterPro: IPR009	99.0
PF06907	220	Latexin: Latexin; InterPro: IPR009684 This family	96.1
TIGR01572	265	A_thl_para_3677 Arabidopsis paralogous family TIGR	94.87
PF07172	95	GRP: Glycine rich protein family; InterPro: IPR010	93.23
COG3360	71	Uncharacterized conserved protein [Function unknow	89.62
PF05984	100	Cytomega_UL20A: Cytomegalovirus UL20A protein; Int	89.19
PF10731	65	Anophelin: Thrombin inhibitor from mosquito; Inter	88.27
PF07311	66	Dodecin: Dodecin; InterPro: IPR009923 This entry r	84.36

>cd00042 CY Substituted updates: Jan 30, 2002

Probab=99.87  E-value=4.6e-21  Score=124.41  Aligned_cols=83  Identities=45%  Similarity=0.664  Sum_probs=76.9

Q ss_pred             ceeeeCCCCCChHHHHHHHHHHHHHHhhCCCc-eEEEEEEEEEEEEeceEeEEEEEEEeeCC------------------
Q 037584           29 GGWKPIEDPNDPHVIEIGQFAVVEYNKQSKME-LKFQSVEKGETQVVSGTNYRLVVAAQDGT------------------   89 (114)
Q Consensus        29 GG~~~i~~~~d~~v~~~~~~Av~~~n~~~~~~-~~~~~V~~a~~QVVaG~nY~l~v~~~~~~------------------   89 (114)
                      |||.++ +.+||++++++++|+.+||+.+++. +.+.+|++|++|||+|++|++++++.++.                  
T Consensus         1 gg~~~~-~~~d~~~~~~~~~a~~~~N~~~~~~~~~~~~i~~~~~QvvaG~~y~i~~~~~~t~C~k~~~~~~~~~c~~~~~   79 (105)
T cd00042           1 GGPSDI-PANDPEVQELADFAVAEYNKKSNDKYLEFFKVLSAKSQVVAGTNYYITVEAGDTNCKKSSVPLDCPDCKLLEE   79 (105)
T ss_pred             CCCccC-CCCCHHHHHHHHHHHHHHHhhcCccceeEEEEEEEEEEEEeeeEEEEEEEEecccccccCccccccccccccc
Confidence            899995 8999999999999999999999988 77799999999999999999999999862                  


Q ss_pred             -CCceEEEEEEEec-CCceEEEeEE
Q 037584           90 -ATNKYQAVVWENA-KQIKKLTSFH  112 (114)
Q Consensus        90 -~~~~~~~~V~~~p-~~~~~l~sf~  112 (114)
                       ....|.+.||.+| .+.+++++|+
T Consensus        80 ~~~~~C~~~V~~~pw~~~~~l~~~~  104 (105)
T cd00042          80 GKKKFCTAKVWEKPWENFKELLSFK  104 (105)
T ss_pred             CCCEEEEEEEEecCCCCceeeeecc
Confidence             4679999999999 9999999985

>smart00043 CY Cystatin-like domain

Probab=99.85  E-value=3e-21  Score=125.77  Aligned_cols=85  Identities=39%  Similarity=0.581  Sum_probs=77.4

Q ss_pred             ccceeeeCCCCCChHHHHHHHHHHHHHHhhCCCceE--EEEEEEEEEEEeceEeEEEEEEEeeCCCC-------------
Q 037584           27 LVGGWKPIEDPNDPHVIEIGQFAVVEYNKQSKMELK--FQSVEKGETQVVSGTNYRLVVAAQDGTAT-------------   91 (114)
Q Consensus        27 ~~GG~~~i~~~~d~~v~~~~~~Av~~~n~~~~~~~~--~~~V~~a~~QVVaG~nY~l~v~~~~~~~~-------------   91 (114)
                      ++|||+++ +.+||++++++++|+.+||+++++.|.  +.+|++|++|||+|++|++++++.++.=.             
T Consensus         2 ~~Gg~~~~-~~~d~~~~~~~~~a~~~~N~~~~~~~~~~~~~v~~a~~QvvaG~~y~l~~~v~~t~C~k~~~~~~~C~~~~   80 (107)
T smart00043        2 CLGGPSDV-PPNDPEVQEAADFAVAEYNKKSNDKYELRVIKVVSAKSQVVAGTNYYLKVEVGETNCKKLSVDLENCPFLD   80 (107)
T ss_pred             CCCCCccC-CCCCHHHHHHHHHHHHHHHHhcccchhhhhhhhheeeeeeecceEEEEEEEEEeceeccCCcccccCCCCC
Confidence            68999995 889999999999999999999988887  68999999999999999999999987611             


Q ss_pred             ---ceEEEEEEEec-CCceEEEeEE
Q 037584           92 ---NKYQAVVWENA-KQIKKLTSFH  112 (114)
Q Consensus        92 ---~~~~~~V~~~p-~~~~~l~sf~  112 (114)
                         ..|.++||.+| .+++++++|+
T Consensus        81 ~~~~~C~~~V~~~pw~~~~~~~~~~  105 (107)
T smart00043       81 QGEKFCTAKVWEKPWENKIKLVEFK  105 (107)
T ss_pred             CCccEEEEEEEecCCCCccCcccee
Confidence               47999999999 9999999986

Cystatins are a family of cysteine protease inhibitors that occur mainly as single domain proteins. However some extracellular proteins such as kininogen, His-rich glycoprotein and fetuin also contain these domains.

>PF00031 Cystatin: Cystatin domain; InterPro: IPR000010 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively

Probab=99.80  E-value=7.2e-19  Score=111.91  Aligned_cols=59  Identities=41%  Similarity=0.650  Sum_probs=55.0

Q ss_pred             ceeeeCCCCCChHHHHHHHHHHHHHHhhCCCc--eEEEEEEEEEEEEeceEeEEEEEEEeeC
Q 037584           29 GGWKPIEDPNDPHVIEIGQFAVVEYNKQSKME--LKFQSVEKGETQVVSGTNYRLVVAAQDG   88 (114)
Q Consensus        29 GG~~~i~~~~d~~v~~~~~~Av~~~n~~~~~~--~~~~~V~~a~~QVVaG~nY~l~v~~~~~   88 (114)
                      |||+++ +++||++++++++|+.+||+++++.  |.+.+|++|++|||+|++|+|++++.++
T Consensus         1 Gg~~~~-~~~dp~v~~~~~~al~~~N~~~~~~~~~~~~~v~~a~~QvV~G~~Y~i~~~~~~t   61 (94)
T PF00031_consen    1 GGPSPV-DPNDPEVQEAAEFALDKFNEQSNSGYKFKLVKVISATTQVVAGINYYIEFEVGET   61 (94)
T ss_dssp             SSEEEE-CTTSHHHHHHHHHHHHHHHHHSTTSEEEEEEEEEEEEEEESSSEEEEEEEEEEEE
T ss_pred             CCCccC-CCCCHHHHHHHHHHHHHHHHhCcccCcceeeeeeEEEEeecCCceEEEEEEEEcc
Confidence            899996 8999999999999999999999665  4669999999999999999999999987

In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. The cystatins are cysteine proteinase inhibitors belonging to MEROPS inhibitor family I25, clan IH [, , ]. They mainly inhibit peptidases belonging to peptidase families C1 (papain family) and C13 (legumain family). The cystatin family includes: The Type 1 cystatins, which are intracellular cystatins that are present in the cytosol of many cell types, but can also appear in body fluids at significant concentrations. They are single-chain polypeptides of about 100 residues, which have neither disulphide bonds nor carbohydrate side chains. The Type 2 cystatins, which are mainly extracellular secreted polypeptides synthesised with a 19-28 residue signal peptide. They are broadly distributed and found in most body fluids. The Type 3 cystatins, which are multidomain proteins. The mammalian representatives of this group are the kininogens. There are three different kininogens in mammals: H- (high molecular mass, IPR002395 from INTERPRO) and L- (low molecular mass) kininogen which are found in a number of species, and T-kininogen that is found only in rat. Unclassified cystatins. These are cystatin-like proteins found in a range of organisms: plant phytocystatins, fetuin in mammals, insect cystatins and a puff adder venom cystatin which inhibits metalloproteases of the MEROPS peptidase family M12 (astacin/adamalysin). Also a number of the cystatins-like proteins have been shown to be devoid of inhibitory activity. All true cystatins inhibit cysteine peptidases of the papain family (MEROPS peptidase family C1), and some also inhibit legumain family enzymes (MEROPS peptidase family C13). These peptidases play key roles in physiological processes, such as intracellular protein degradation (cathepsins B, H and L), are pivotal in the remodelling of bone (cathepsin K), and may be important in the control of antigen presentation (cathepsin S, mammalian legumain). Moreover, the activities of such peptidases are increased in pathophysiological conditions, such as cancer metastasis and inflammation. Additionally, such peptidases are essential for several pathogenic parasites and bacteria. Thus in animals cystatins not only have capacity to regulate normal body processes and perhaps cause disease when down-regulated, but in other organisms may also participate in defence against biotic and abiotic stress. ; GO: 0004869 cysteine-type endopeptidase inhibitor activity; PDB: 3L0R_B 2W9P_K 2W9Q_A 3S67_A 3QRD_D 1R4C_G 3GAX_A 1TIJ_B 1G96_A 3NX0_A ....

>PF07430 PP1: Phloem filament protein PP1; InterPro: IPR009994 This domain represents a conserved region approximately 200 residues long, four copies of which are found within the plant phloem filament protein PP1

Probab=99.64  E-value=1.4e-15  Score=107.67  Aligned_cols=94  Identities=40%  Similarity=0.623  Sum_probs=79.3

Q ss_pred             hhccccCCccccceeeeCCCCCChHHHHHHHHHHHHHHhhCCCceEEEEEEEEEEEEec--eEeEEEEEEEeeC-CCCce
Q 037584           17 LATGARTDAALVGGWKPIEDPNDPHVIEIGQFAVVEYNKQSKMELKFQSVEKGETQVVS--GTNYRLVVAAQDG-TATNK   93 (114)
Q Consensus        17 ~~~~~~~~~~~~GG~~~i~~~~d~~v~~~~~~Av~~~n~~~~~~~~~~~V~~a~~QVVa--G~nY~l~v~~~~~-~~~~~   93 (114)
                      +++..+..++...+|.+|+|+++|.+|++++||+.+|| +.++.++|++|.+++.|=++  |++|+|++.+.|+ ++...
T Consensus       103 ~~~v~pv~~p~~~~Wi~I~nin~p~VQeLgkFAV~EhN-K~gd~LkF~KV~eGw~q~l~~d~ikYrLhI~AkDg~G~~~~  181 (202)
T PF07430_consen  103 GAVVYPVATPQSKKWIPIPNINNPFVQELGKFAVIEHN-KAGDKLKFEKVYEGWYQDLGNDGIKYRLHIVAKDGLGRLGN  181 (202)
T ss_pred             ceeeccccCcccCCCEECCCCCcHHHHHHHHHHHHHHh-hcCCceEEEEEeeEEEEeccCCCceEEEEEEeecCCCCcCc
Confidence            33445555677899999989999999999999999999 67889999999999999884  6999999999998 68889


Q ss_pred             EEEEEEEec--C-CceEEEeE
Q 037584           94 YQAVVWENA--K-QIKKLTSF  111 (114)
Q Consensus        94 ~~~~V~~~p--~-~~~~l~sf  111 (114)
                      |+|.||+++  . ..+.|.||
T Consensus       182 YeAvV~~k~~~sk~i~i~~sf  202 (202)
T PF07430_consen  182 YEAVVWEKQFLSKKIKILESF  202 (202)
T ss_pred             eEEEEEEeccCcceEEEEecC
Confidence            999999986  3 44445555

This is one of the constituents of the proteinaceous filaments found in the sieve elements of Cucurbita phloem [].

>TIGR01638 Atha_cystat_rel Arabidopsis thaliana cystatin-related protein

Probab=99.02  E-value=1.7e-09  Score=68.86  Aligned_cols=66  Identities=17%  Similarity=0.138  Sum_probs=56.4

Q ss_pred             CCCChHHHHHHHHHHHHHHhhCCCceEEEEEEEEEEEEeceEeEEEEEEEeeCC---CCceEEEEEEEe
Q 037584           36 DPNDPHVIEIGQFAVVEYNKQSKMELKFQSVEKGETQVVSGTNYRLVVAAQDGT---ATNKYQAVVWEN  101 (114)
Q Consensus        36 ~~~d~~v~~~~~~Av~~~n~~~~~~~~~~~V~~a~~QVVaG~nY~l~v~~~~~~---~~~~~~~~V~~~  101 (114)
                      ..+.+-++++++.|+++||+..+..++|++|++|..|..+|..|+|++++.|..   ..+.+++.||..
T Consensus         9 ~T~rd~~~~la~~al~k~N~~~~t~lEfV~vVrAn~~~~~g~~~yITF~Ard~~d~p~~e~~q~~v~~~   77 (92)
T TIGR01638         9 ETNRDLLERLSYVASKKYNDTKFLNLELVEVVRANYRGGAKSKSYITFEARDKPDGPLGEYQQAAVVYL   77 (92)
T ss_pred             cCHHHHHHHHHHHHHHHhhhhcCceEEEEEEEEEEeeccceEEEEEEEEEecCCCCCHHHhhheeeEec
Confidence            345666899999999999999999999999999999999999999999999864   345667776653

This model represents a family similar in sequence and probably homologous to a large family of cysteine proteinase inhibitors, or cystatins, as described by pfam model pfam00031. Cystatins may help plants resist attack by insects.

>PF07430 PP1: Phloem filament protein PP1; InterPro: IPR009994 This domain represents a conserved region approximately 200 residues long, four copies of which are found within the plant phloem filament protein PP1

Probab=99.00  E-value=9.1e-10  Score=78.24  Aligned_cols=88  Identities=33%  Similarity=0.473  Sum_probs=78.0

Q ss_pred             ccccceeeeCCCCCChHHHHHHHHHHHHHHhhCCCceEEEEEEEEE--EEEeceEeEEEEEEEeeC-CCCceEEEEEEEe
Q 037584           25 AALVGGWKPIEDPNDPHVIEIGQFAVVEYNKQSKMELKFQSVEKGE--TQVVSGTNYRLVVAAQDG-TATNKYQAVVWEN  101 (114)
Q Consensus        25 ~~~~GG~~~i~~~~d~~v~~~~~~Av~~~n~~~~~~~~~~~V~~a~--~QVVaG~nY~l~v~~~~~-~~~~~~~~~V~~~  101 (114)
                      ....+||.+|+|+.+|.+|+++.|++.+++.+-++.+.|..|.+.+  .|..+|+.|++.+++-|- +..-.|++.|+++
T Consensus         4 ~~~~~~w~~ip~v~~~~~q~v~~~~veq~k~~~~~~l~~~~v~egwy~el~~~~~~yrlhv~a~d~l~r~l~~e~ii~e~   83 (202)
T PF07430_consen    4 VPFSPKWIKIPDVKEPCLQEVAKFAVEQFKIQYGDSLKFRSVVEGWYFELCPNSLKYRLHVKAIDFLGRSLKYEAIIIEE   83 (202)
T ss_pred             cccCcccccCCcccchHHHHHHHHHHHHHhhhcccceeeeeeeeceeecccccceeEEEeehhhhhhccccceeeeeeeh
Confidence            4567999999999999999999999999999999999999999999  678899999999999874 3456899999986


Q ss_pred             -c--CCceEEEeEE
Q 037584          102 -A--KQIKKLTSFH  112 (114)
Q Consensus       102 -p--~~~~~l~sf~  112 (114)
                       |  ++.++|.||-
T Consensus        84 ~~~~~~~~kl~s~l   97 (202)
T PF07430_consen   84 KPQLTRIRKLASIL   97 (202)
T ss_pred             hhhhhhhhhhheee
Confidence             6  7899988874

This is one of the constituents of the proteinaceous filaments found in the sieve elements of Cucurbita phloem [].

>PF06907 Latexin: Latexin; InterPro: IPR009684 This family consists of several animal specific latexin and proteins related to latexin that belong to MEROPS proteinase inhibitor family I47, clan I- []

Probab=96.10  E-value=0.15  Score=37.44  Aligned_cols=65  Identities=18%  Similarity=0.232  Sum_probs=51.8

Q ss_pred             CCCChHHHHHHHHHHHHHHhhCCCce---EEEEEEEEEEEEec--eEeEEEEEEEeeCC---CCceEEEEEEE
Q 037584           36 DPNDPHVIEIGQFAVVEYNKQSKMEL---KFQSVEKGETQVVS--GTNYRLVVAAQDGT---ATNKYQAVVWE  100 (114)
Q Consensus        36 ~~~d~~v~~~~~~Av~~~n~~~~~~~---~~~~V~~a~~QVVa--G~nY~l~v~~~~~~---~~~~~~~~V~~  100 (114)
                      +++.-..+++|+.|..-+|-..++++   .+.+|.+|...++.  |-+|.+.+.+.+-.   ....|.|+|+-
T Consensus         3 ~p~h~~a~rAA~va~hy~N~~~GSP~~l~~l~~V~~a~~e~ip~~G~Ky~L~FSte~~~~~e~~g~CsA~V~f   75 (220)
T PF06907_consen    3 NPSHRPAQRAARVAQHYINYRAGSPSRLFVLQQVQKARAEDIPGEGCKYDLVFSTEEYIEGEHLGNCSAEVFF   75 (220)
T ss_dssp             -TTSHHHHHHHHHHHHHHHHHH-BTTB-EEEEEEEEEEEEEETTTEEEEEEEEEEEETTT---EEEEEEEEEE
T ss_pred             CCcchHHHHHHHHHHHHhccccCCCceeeehhhhhhhhheeccCCCCEEEEEEEhHHhhcCCceeEeEEEEEe
Confidence            56667789999999999998877764   45799999999985  78999999998843   55789999986

Latexin, a protein possessing inhibitory activity against rat carboxypeptidase A1 (CPA1) and CPA2 (MEROPS peptidase family M14A), is expressed in a neuronal subset in the cerebral cortex and cells in other neural and non-neural tissues of rat [, ]. OCX-32, the 32 kDa eggshell matrix protein, is present at high levels in the uterine fluid during the terminal phase of eggshell formation, and is localised predominantly in the outer eggshell. The timing of OCX-32 secretion into the uterine fluid suggests that it may play a role in the termination of mineral deposition []. OCX-32 protein possesses limited identity (32%) to two unrelated proteins: latexin and to a skin protein that is encoded by a retinoic acid receptor-responsive gene, TIG1. Tazarotene Induced Gene 1 (TIG1) is a putative 228 transmembrane protein with a small N-terminal intracellular region, a single membrane-spanning hydrophobic region, and a large C-terminal extracellular region containing a glycosylation signal. TIG1 is up-regulated by retinoic acid receptor but not by retinoid X receptor-specific synthetic retinoids []. TIG1 may be a tumour suppressor gene whose diminished expression is involved in the malignant progression of prostate cancer [].; PDB: 1WNH_A 2BO9_B.

>TIGR01572 A_thl_para_3677 Arabidopsis paralogous family TIGR01572

Probab=94.87  E-value=0.13  Score=38.70  Aligned_cols=61  Identities=20%  Similarity=0.237  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHHHhhCCCceEEEEEEEEEEEEeceEeEEEEEEEeeCC---CCceEEEEEEEec
Q 037584           42 VIEIGQFAVVEYNKQSKMELKFQSVEKGETQVVSGTNYRLVVAAQDGT---ATNKYQAVVWENA  102 (114)
Q Consensus        42 v~~~~~~Av~~~n~~~~~~~~~~~V~~a~~QVVaG~nY~l~v~~~~~~---~~~~~~~~V~~~p  102 (114)
                      ++-.|+.++..||...++.++|..|.+.-.+..+-+.|+|++++.|..   ..++|+..|.+.-
T Consensus        42 vklyAr~GLH~YN~~~GTNlel~~v~K~N~~~~~~~syyITL~A~DP~s~~s~qTFQtrV~e~~  105 (265)
T TIGR01572        42 VKIYARVGLHRYNFLEGTNLELDHVDKFNKRMCALSSYYITLLAVDPDSRFLQQTFQVRVDEQK  105 (265)
T ss_pred             HHHHHHhhhhhhhhccCccceehhhhhhccchhhheeeeEEEEEecCCccccceEEEEEEEecc
Confidence            477799999999999999999999999999999999999999999865   4577888887755

This model describes a paralogous family of hypothetical proteins in Arabidopsis thaliana. No homologs are detected from other species. Length heterogeneity within the family is attributable partly to a 21-residue repeat present in from zero to three tandem copies. The central region of the repeat resembles the pattern [VIF][FY][QK]GX[LM]P[DEK]XXXDDAL.

>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins

Probab=93.23  E-value=0.033  Score=35.74  Aligned_cols=12  Identities=42%  Similarity=0.686  Sum_probs=7.3

Q ss_pred             Ccch-hhHHHHHH
Q 037584            1 MKGR-CLYLALFL   12 (114)
Q Consensus         1 m~~~-~~~l~~~~   12 (114)
                      |+|| ++||+||+
T Consensus         1 MaSK~~llL~l~L   13 (95)
T PF07172_consen    1 MASKAFLLLGLLL   13 (95)
T ss_pred             CchhHHHHHHHHH
Confidence            8887 45555553

Some of them may be involved in resistance to environmental stress [].

>COG3360 Uncharacterized conserved protein [Function unknown]

Probab=89.62  E-value=3.1  Score=25.13  Aligned_cols=46  Identities=15%  Similarity=0.198  Sum_probs=34.0

Q ss_pred             hHHHHHHHHHHHHHHhhCCCceEEEEEEEEEEEEece--EeEEEEEEEe
Q 037584           40 PHVIEIGQFAVVEYNKQSKMELKFQSVEKGETQVVSG--TNYRLVVAAQ   86 (114)
Q Consensus        40 ~~v~~~~~~Av~~~n~~~~~~~~~~~V~~a~~QVVaG--~nY~l~v~~~   86 (114)
                      +.+.++++-|++.-.+ +-+.+.+.+|++-+.+|+.|  ..|.++++++
T Consensus        17 ~S~d~Ai~~Ai~RA~~-t~~~l~wfeV~~~rg~v~~g~v~hyqv~lkVg   64 (71)
T COG3360          17 TSIDAAIANAIARAAD-TLDNLDWFEVVETRGHVVDGAVAHYQVTLKVG   64 (71)
T ss_pred             ccHHHHHHHHHHHHHh-hhhcceEEEEEeecccEeecceEEEEEEEEEE
Confidence            4466667777776442 33567889999999999988  4788888875

>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins

Probab=89.19  E-value=0.35  Score=30.45  Aligned_cols=22  Identities=36%  Similarity=0.360  Sum_probs=16.6

Q ss_pred             CcchhhHHHHHHHHHHhhcccc
Q 037584            1 MKGRCLYLALFLSTLLLATGAR   22 (114)
Q Consensus         1 m~~~~~~l~~~~~~~~~~~~~~   22 (114)
                      |+||+.+|+++.+.+-.+.+++
T Consensus         1 MaRRlwiLslLAVtLtVALAAP   22 (100)
T PF05984_consen    1 MARRLWILSLLAVTLTVALAAP   22 (100)
T ss_pred             CchhhHHHHHHHHHHHHHhhcc
Confidence            9999999999976665554444

UL20A is thought to be a glycoprotein [].

>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen

Probab=88.27  E-value=0.53  Score=27.72  Aligned_cols=17  Identities=24%  Similarity=0.415  Sum_probs=13.5

Q ss_pred             CcchhhHHHHHHHHHHh
Q 037584            1 MKGRCLYLALFLSTLLL   17 (114)
Q Consensus         1 m~~~~~~l~~~~~~~~~   17 (114)
                      |++|+|+++++-++++.
T Consensus         1 MA~Kl~vialLC~aLva   17 (65)
T PF10731_consen    1 MASKLIVIALLCVALVA   17 (65)
T ss_pred             CcchhhHHHHHHHHHHH
Confidence            99999999887655555

The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.

>PF07311 Dodecin: Dodecin; InterPro: IPR009923 This entry represents proteins with a Dodecin-like topology

Probab=84.36  E-value=6.7  Score=23.46  Aligned_cols=48  Identities=19%  Similarity=0.225  Sum_probs=38.4

Q ss_pred             CChHHHHHHHHHHHHHHhhCCCceEEEEEEEEEEEEece--EeEEEEEEEe
Q 037584           38 NDPHVIEIGQFAVVEYNKQSKMELKFQSVEKGETQVVSG--TNYRLVVAAQ   86 (114)
Q Consensus        38 ~d~~v~~~~~~Av~~~n~~~~~~~~~~~V~~a~~QVVaG--~nY~l~v~~~   86 (114)
                      +.....++.+.|+.+-++. -..+...+|.+-+..|.+|  ..|+.+++++
T Consensus        12 S~~S~edAv~~Av~~A~kT-l~ni~~~eV~e~~~~v~dg~i~~y~v~lkv~   61 (66)
T PF07311_consen   12 SPKSWEDAVQNAVARASKT-LRNIRWFEVKEQRGHVEDGKITEYQVNLKVS   61 (66)
T ss_dssp             ESSHHHHHHHHHHHHHHHH-SSSEEEEEEEEEEEEEETTCEEEEEEEEEEE
T ss_pred             CCCCHHHHHHHHHHHHhhc-hhCcEEEEEEEEEEEEeCCcEEEEEEEEEEE
Confidence            4567888888899887753 3568889999999999988  5799988875

Dodecin flavoprotein is a small dodecameric flavin-binding protein from Halobacterium salinarium (Halobacterium halobium) that contains two flavins stacked in a single binding pocket between two tryptophan residues to form an aromatic tetrade []. Dodecin binds riboflavin, although it appears to have a broad specificity for flavins. Lumichrome, a molecule associated with flavin metabolism, appears to be a ligand of dodecin, which could act as a waste-trapping device. ; PDB: 2VYX_L 2DEG_F 2V18_K 2V19_D 2UX9_B 2CZ8_E 2V21_F 2CC8_A 2CCB_A 2VX9_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	114
1eqk_A	102	Solution Structure Of Oryzacystatin-I, A Cysteine P		1e-10
3ul5_A	139	Saccharum Officinarum Canecystatin-1 In Space Group		2e-07
3ima_B	91	Complex Strcuture Of Tarocystatin And Papain Length		1e-06
2l4v_A	135	Three Dimensional Structure Of Pineapple Cystatin L		3e-06
3lh4_A	115	Crystal Structure Of Sialostatin L2 Length = 115		7e-06
3mwz_A	115	Crystal Structure Of The Selenomethionine Derivativ		1e-05
2w9p_A	87	Crystal Structure Of Potato Multicystatin Length =		7e-05

>pdb|1EQK|A Chain A, Solution Structure Of Oryzacystatin-I, A Cysteine Proteinase Inhibitor Of The Rice, Oryza Sativa L. Japonica Length = 102

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
Query: 27  LVGGWKPIEDPNDPHVIEIGQFAVVEYNKQSKMELKFQSVEKGETQVVSGTNYRLVVAAQ 86
           ++GG +P+ + ND H++++ +FAV E+NK++   L+F+ +   + QVV+GT Y   +  +
Sbjct: 8   VLGGVEPVGNENDLHLVDLARFAVTEHNKKANSLLEFEKLVSVKQQVVAGTLYYFTIEVK 67
Query: 87  DGTATNKYQAVVWENA-KQIKKLTSF 111
           +G A   Y+A VWE      K+L  F
Sbjct: 68  EGDAKKLYEAKVWEKPWMDFKELQEF 93

>pdb|3UL5|A Chain A, Saccharum Officinarum Canecystatin-1 In Space Group C2221 Length = 139

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 33  PIEDPNDPHVIEIGQFAVVEYNKQSKMELKFQSVEKGETQVVSGTNYRLVVAAQDGTATN 92
           P    ND   IE+ +FAV E+N ++   L+F+ + K   QVV+GT +   V  ++     
Sbjct: 53  PAGHENDLEAIELARFAVAEHNSKTNAMLEFERLVKVRHQVVAGTMHHFTVQVKEAGGGK 112
Query: 93  K-YQAVVWENA-KQIKKLTSF 111
           K Y+A VWE   +  K+L SF
Sbjct: 113 KLYEAKVWEKVWENFKQLQSF 133

>pdb|3IMA|B Chain B, Complex Strcuture Of Tarocystatin And Papain Length = 91

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 26  ALVGGWKPIEDP-NDPHVIEIGQFAVVEYNKQSKMELKFQSVEKGETQVVSGTNYRLVVA 84
           AL+GG   +E   N   V E+ +FAV E+NK+    L+F  + K + QVVSG  + L V 
Sbjct: 1   ALMGGIVDVEGAQNSAEVEELARFAVDEHNKKENALLQFSRLVKAKQQVVSGIMHHLTVE 60
Query: 85  AQDGTATNKYQAVVWENA-KQIKKLTSF 111
             +G     Y+A VW  A    KKL  F
Sbjct: 61  VIEGGKKKVYEAKVWVQAWLNSKKLHEF 88

>pdb|2L4V|A Chain A, Three Dimensional Structure Of Pineapple Cystatin Length = 135

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 33  PIEDPNDPHVIEIGQFAVVEYNKQSKMELKFQSVEKGETQVVSGTNYRLVVAAQDGTATN 92
           P+ + N     ++ +FAV EYN ++   L+F  V K + QVVSG  + L V   D     
Sbjct: 50  PLNNENGFDKEDLARFAVREYNNKNNALLEFVRVVKAKEQVVSGMMHYLTVEVNDAGKKK 109
Query: 93  KYQAVVWE----NAKQIKKLT 109
            Y+A VWE    N +Q+++ T
Sbjct: 110 LYEAKVWEQVWMNFRQLQEFT 130

>pdb|3LH4|A Chain A, Crystal Structure Of Sialostatin L2 Length = 115

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 26 ALVGGWKPIEDPNDPHVIEIGQFAVVEYNKQSKMELKFQSV---EKGETQVVSGTNYRLV 82
          AL GG++   + +DP  +E+  +A   ++ Q   +  F +V    K ETQ V+GTNYRL 
Sbjct: 4  ALRGGYRERSNQDDPEYLELAHYATSTWSAQQPGKTHFDTVVEVLKVETQTVAGTNYRLT 63
Query: 83 VAAQDGTA 90
          +   + T 
Sbjct: 64 LKVAESTC 71

>pdb|3MWZ|A Chain A, Crystal Structure Of The Selenomethionine Derivative Of The L 22,47, 100 M Mutant Of Sialostatin L2 Length = 115

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 26 ALVGGWKPIEDPNDPHVIEIGQFAVVEYNKQSKMELKFQSV---EKGETQVVSGTNYRLV 82
          AL GG++   + +DP  +E   +A   ++ Q   +  F +V    K ETQ V+GTNYRL 
Sbjct: 4  ALRGGYRERSNQDDPEYLEXAHYATSTWSAQQPGKTHFDTVVEVXKVETQTVAGTNYRLT 63
Query: 83 VAAQDGTA 90
          +   + T 
Sbjct: 64 LKVAESTC 71

>pdb|2W9P|A Chain A, Crystal Structure Of Potato Multicystatin Length = 87

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 34  IEDPNDPHVIEIGQFAVVEYNKQSKMELKFQSVEKGETQVVSGTNYRLVVAAQDGTATNK 93
           + +PN+    E+ +FA+ +YNK+    L+F      + QVV+G  Y + +AA D     K
Sbjct: 5   VPNPNNTKFQELARFAIQDYNKKQNAHLEFVENLNVKEQVVAGIMYYITLAATDDAGKKK 64
Query: 94  -YQAVVW-ENAKQIKKLTSF 111
            Y+A +W +  +  KK+  F
Sbjct: 65  IYKAKIWVKEWEDFKKVVEF 84

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	114
1eqk_A	102	Oryzacystatin-I; alpha and beta proteins, cystatin	1e-33
2l4v_A	135	Cystatin; protease inhibitor, hydrolase inhibitor;	1e-31
2w9q_A	87	Multicystatin; protease inhibitor, thiol protease	7e-31
3ima_B	91	Cysteine proteinase inhibitor; cystatin, tarocysta	1e-29
3mwz_A	115	Sialostatin L2; antiparallel beta-sheet, hydrolase	3e-25
3l0r_A	115	Cystatin-2, OMC2; SOFT TICK, protease inhibitor, t	1e-21
2kxg_A	95	Aspartic protease inhibitor; sqapi, protein, hydro	5e-17
1roa_A	122	Cystatin D; inhibitor of cysteine pepidases, prote	9e-13
1yvb_I	111	Cystatin; cysteine protease-inhibitor complex, hyd	3e-12
3gax_A	120	Cystatin-C; cysteine protease inhibitor, 3D domain	3e-12
2ch9_A	131	Cystatin F; inhibitor, cysteine protease inhibitor	8e-12

>1eqk_A Oryzacystatin-I; alpha and beta proteins, cystatin-like fold, cystatin/monellin superfamily, phytocystatin family; NMR {Oryza sativa japonica group} SCOP: d.17.1.2 Length = 102

 Score =  111 bits (279), Expect = 1e-33
 Identities = 30/92 (32%), Positives = 54/92 (58%), Gaps = 1/92 (1%)

Query: 21  ARTDAALVGGWKPIEDPNDPHVIEIGQFAVVEYNKQSKMELKFQSVEKGETQVVSGTNYR 80
           +     ++GG +P+ + ND H++++ +FAV E+NK++   L+F+ +   + QVV+GT Y 
Sbjct: 2   SSDGGPVLGGVEPVGNENDLHLVDLARFAVTEHNKKANSLLEFEKLVSVKQQVVAGTLYY 61

Query: 81  LVVAAQDGTATNKYQAVVWENA-KQIKKLTSF 111
             +  ++G A   Y+A VWE      K+L  F
Sbjct: 62  FTIEVKEGDAKKLYEAKVWEKPWMDFKELQEF 93

>2l4v_A Cystatin; protease inhibitor, hydrolase inhibitor; NMR {Ananas comosus} Length = 135

 Score =  107 bits (269), Expect = 1e-31
 Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 3/91 (3%)

Query: 24  DAALVGGWK--PIEDPNDPHVIEIGQFAVVEYNKQSKMELKFQSVEKGETQVVSGTNYRL 81
           +  ++GG    P+ + N     ++ +FAV EYN ++   L+F  V K + QVVSG  + L
Sbjct: 39  EHPIMGGIYDAPLNNENGFDKEDLARFAVREYNNKNNALLEFVRVVKAKEQVVSGMMHYL 98

Query: 82  VVAAQDGTATNKYQAVVWENA-KQIKKLTSF 111
            V   D      Y+A VWE      ++L  F
Sbjct: 99  TVEVNDAGKKKLYEAKVWEQVWMNFRQLQEF 129

>2w9q_A Multicystatin; protease inhibitor, thiol protease inhibitor, hydrolase inhibitor; 2.50A {Solanum tuberosum} PDB: 2w9p_A Length = 87

 Score =  104 bits (260), Expect = 7e-31
 Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 2/84 (2%)

Query: 30  GWKPIEDPNDPHVIEIGQFAVVEYNKQSKMELKFQSVEKGETQVVSGTNYRLVVAAQDGT 89
           G   + +PN+    E+ +FA+ +YNK+    L+F      + QVV+G  Y + +AA D  
Sbjct: 1   GIVNVPNPNNTKFQELARFAIQDYNKKQNAHLEFVENLNVKEQVVAGIMYYITLAATDDA 60

Query: 90  ATNK-YQAVVWENA-KQIKKLTSF 111
              K Y+A +W    +  KK+  F
Sbjct: 61  GKKKIYKAKIWVKEWEDFKKVVEF 84

>3ima_B Cysteine proteinase inhibitor; cystatin, tarocystatin, cecpi, papain, phytocystatin, allergen, disulfide bond, hydrolase, protease; 2.03A {Colocasia esculenta} Length = 91

 Score =  101 bits (252), Expect = 1e-29
 Identities = 34/88 (38%), Positives = 46/88 (52%), Gaps = 2/88 (2%)

Query: 26  ALVGGWKPIED-PNDPHVIEIGQFAVVEYNKQSKMELKFQSVEKGETQVVSGTNYRLVVA 84
           AL+GG   +E   N   V E+ +FAV E+NK+    L+F  + K + QVVSG  + L V 
Sbjct: 1   ALMGGIVDVEGAQNSAEVEELARFAVDEHNKKENALLQFSRLVKAKQQVVSGIMHHLTVE 60

Query: 85  AQDGTATNKYQAVVWENA-KQIKKLTSF 111
             +G     Y+A VW  A    KKL  F
Sbjct: 61  VIEGGKKKVYEAKVWVQAWLNSKKLHEF 88

>3mwz_A Sialostatin L2; antiparallel beta-sheet, hydrolase inhibitor; HET: MSE; 1.52A {Ixodes scapularis} PDB: 3lh4_A 3li7_A Length = 115

 Score = 90.9 bits (225), Expect = 3e-25
 Identities = 27/109 (24%), Positives = 46/109 (42%), Gaps = 21/109 (19%)

Query: 24  DAALVGGWKPIEDPNDPHVIEIGQFAVVEYNKQSKMELKFQSVEK---GETQVVSGTNYR 80
           + AL GG++   + +DP  +E+  +A   ++ Q   +  F +V +    ETQ V+GTNYR
Sbjct: 2   ELALRGGYRERSNQDDPEYLEMAHYATSTWSAQQPGKTHFDTVVEVMKVETQTVAGTNYR 61

Query: 81  LVVAA------------------QDGTATNKYQAVVWENAKQIKKLTSF 111
           L +                        A      V++ N +  K + SF
Sbjct: 62  LTLKVAESTCELTSTYNKDTCQANANAAQRTCTTVIYRNMQGEKSINSF 110

>3l0r_A Cystatin-2, OMC2; SOFT TICK, protease inhibitor, thiol protease INHI hydrolase inhibitor; 2.45A {Ornithodoros moubata} Length = 115

 Score = 81.4 bits (200), Expect = 1e-21
 Identities = 24/108 (22%), Positives = 44/108 (40%), Gaps = 21/108 (19%)

Query: 25  AALVGGWKPIEDPNDPHVIEIGQFAVVEYNKQSKMELKFQSVEKGETQVVSGTNYRLVVA 84
            ++ GGW    DP +   +E+  FA     +  +      +V++ ETQVV+G NY+L + 
Sbjct: 1   TSIPGGWTRQ-DPTEARFLELAHFATSSQTEGREFYDTVVTVKEVETQVVAGMNYKLTIE 59

Query: 85  A-------------------QDGTATNKYQAVVWENA-KQIKKLTSFH 112
                               +D    +   AV++    +  K +TS+ 
Sbjct: 60  ISPSVCKIGEVQYSAEQCVPKDAQQKSTCVAVIYHVPWQNQKSVTSYR 107

>2kxg_A Aspartic protease inhibitor; sqapi, protein, hydrolase inhib; NMR {Cucurbita maxima} Length = 95

 Score = 69.5 bits (169), Expect = 5e-17
 Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 13/84 (15%)

Query: 36  DPNDPHVIEIGQFAVVEYNKQSKMELKFQSVEKGETQVVSG-----TNYRLVVAAQDG-- 88
             NDP V EI +FA+ ++ +Q+   L    V+ G  Q++ G       Y L+++A+    
Sbjct: 13  SVNDPRVKEIAEFALKQHAEQN---LILAGVDAG--QIIKGIPHWDNYYNLILSAKHSPH 67

Query: 89  TATNKYQAVVWENA-KQIKKLTSF 111
             +  Y  VV E A     KL +F
Sbjct: 68  EFSKFYNVVVLEKASDNSLKLVAF 91

>1roa_A Cystatin D; inhibitor of cysteine pepidases, protein binding; 1.80A {Homo sapiens} SCOP: d.17.1.2 PDB: 1rn7_A Length = 122

 Score = 59.1 bits (142), Expect = 9e-13
 Identities = 22/83 (26%), Positives = 29/83 (34%), Gaps = 4/83 (4%)

Query: 18 ATGARTDAALVGGWKPIEDPNDPHVIEIGQFAVVEYNKQS---KMELKFQSVEKGETQVV 74
           + +     L GG     D ND  V     FA+ EYNK     +   +   V     Q+V
Sbjct: 1  GSASAQSRTLAGGIHAT-DLNDKSVQRALDFAISEYNKVINKDEYYSRPLQVMAAYQQIV 59

Query: 75 SGTNYRLVVAAQDGTATNKYQAV 97
           G NY   V     T T     +
Sbjct: 60 GGVNYYFNVKFGRTTCTKSQPNL 82

>1yvb_I Cystatin; cysteine protease-inhibitor complex, hydrolase-hydrolase INH complex; 2.70A {Gallus gallus} SCOP: d.17.1.2 PDB: 1a67_A 1cew_I 1a90_A Length = 111

 Score = 57.5 bits (138), Expect = 3e-12
 Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 3/65 (4%)

Query: 27 LVGGWKPIEDPNDPHVIEIGQFAVVEYNKQS--KMELKFQSVEKGETQVVSGTNYRLVVA 84
          L+G   P+ D ND  +    QFA+ EYN+ S  K   +   V   + Q+VSG  Y L V 
Sbjct: 2  LLGAPVPV-DENDEGLQRALQFAMAEYNRASNDKYSSRVVRVISAKRQLVSGIKYILQVE 60

Query: 85 AQDGT 89
              T
Sbjct: 61 IGRTT 65

>3gax_A Cystatin-C; cysteine protease inhibitor, 3D domain swapping, protein AGG amyloid, protein engineering, twinning; 1.70A {Homo sapiens} PDB: 1g96_A 1tij_A 3qrd_A 3ps8_A 3nx0_A 1r4c_A Length = 120

 Score = 57.5 bits (138), Expect = 3e-12
 Identities = 23/70 (32%), Positives = 28/70 (40%), Gaps = 3/70 (4%)

Query: 27 LVGGWKPIEDPNDPHVIEIGQFAVVEYNKQS--KMELKFQSVEKGETQVVSGTNYRLVVA 84
          LVGG        +  V     FAV EYNK S      +   V +   Q+V+G NY L V 
Sbjct: 9  LVGGPMDA-SVEEEGVRRALDFAVGEYNKASNDMYHSRACQVVRARKQIVAGVNYFLDVE 67

Query: 85 AQDGTATNKY 94
              T T   
Sbjct: 68 LCRTTCTKTQ 77

>2ch9_A Cystatin F; inhibitor, cysteine protease inhibitor, glycoprotein; HET: NAG FUL; 2.10A {Homo sapiens} Length = 131

 Score = 56.8 bits (136), Expect = 8e-12
 Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 4/83 (4%)

Query: 21  ARTDAALVGGWKPIEDPNDPHVIEIGQFAVVEYNKQSKMELKFQ--SVEKGETQVVSGTN 78
                   G  K I   NDP V++  +++V ++N  +     F+   + +   Q+V G  
Sbjct: 10  DLNSRVKPGFPKTI-KTNDPGVLQAARYSVEKFNNCTNDMFLFKESRITRALVQIVKGLK 68

Query: 79  YRLVVAAQDGTATNKYQAVVWEN 101
           Y L V     T   K Q +  ++
Sbjct: 69  YMLEVEIGR-TTCKKNQHLRLDD 90

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	114
3ima_B	91	Cysteine proteinase inhibitor; cystatin, tarocysta	99.97
1eqk_A	102	Oryzacystatin-I; alpha and beta proteins, cystatin	99.96
3ul5_A	139	Canecystatin-1; defense, hydrolase inhibitor; 2.30	99.96
2w9q_A	87	Multicystatin; protease inhibitor, thiol protease	99.95
2l4v_A	135	Cystatin; protease inhibitor, hydrolase inhibitor;	99.95
2kxg_A	95	Aspartic protease inhibitor; sqapi, protein, hydro	99.95
2o9u_X	97	Monellin chain B and monellin chain A; alternative	99.93
1yvb_I	111	Cystatin; cysteine protease-inhibitor complex, hyd	99.93
1roa_A	122	Cystatin D; inhibitor of cysteine pepidases, prote	99.92
3mwz_A	115	Sialostatin L2; antiparallel beta-sheet, hydrolase	99.92
3gax_A	120	Cystatin-C; cysteine protease inhibitor, 3D domain	99.92
2ch9_A	131	Cystatin F; inhibitor, cysteine protease inhibitor	99.91
3l0r_A	115	Cystatin-2, OMC2; SOFT TICK, protease inhibitor, t	99.91
1cyu_A	98	Cystatin A, stefin A; proteinase inhibitor (cystei	99.88
2oct_A	98	Cystatin B; stefin, amyloid, domain-swapping, hand	99.88
2bo9_B	222	Human latexin, MUM; metallocarboxypeptidase, X-RAY	96.59
1kwi_A	101	Protegrin-3 precursor; cathelicidin motif, disulfi	92.07
2ux9_A	69	Dodecin; flavoprotein; HET: FMN COA; 1.4A {Thermus	83.71
3onr_A	72	Protein transport protein SECE2; calcium dodecin,	83.53
2vxa_A	72	Dodecin; flavoprotein, flavin, riboflavin, lumichr	83.46
2yiz_A	69	Dodecin; flavoprotein, flavin binding protein, pro	83.17
2cc6_A	68	VNG1446H, dodecin; flavoprotein, flavin, flavin-li	82.3

>3ima_B Cysteine proteinase inhibitor; cystatin, tarocystatin, cecpi, papain, phytocystatin, allergen, disulfide bond, hydrolase, protease; 2.03A {Colocasia esculenta} SCOP: d.17.1.0

Probab=99.97  E-value=5.5e-31  Score=167.46  Aligned_cols=89  Identities=38%  Similarity=0.537  Sum_probs=80.5

Q ss_pred             cccceeeeCC-CCCChHHHHHHHHHHHHHHhhCCCceEEEEEEEEEEEEeceEeEEEEEEEeeCCCCceEEEEEEEec-C
Q 037584           26 ALVGGWKPIE-DPNDPHVIEIGQFAVVEYNKQSKMELKFQSVEKGETQVVSGTNYRLVVAAQDGTATNKYQAVVWENA-K  103 (114)
Q Consensus        26 ~~~GG~~~i~-~~~d~~v~~~~~~Av~~~n~~~~~~~~~~~V~~a~~QVVaG~nY~l~v~~~~~~~~~~~~~~V~~~p-~  103 (114)
                      .++|||+++. +++||+++++++||+.+||+++|+.|.|.+|+++++|||+|+||+|+++++++++.+.|+++||++| +
T Consensus         1 ~~~GG~~~~~~~~~d~~v~~~a~fav~~~n~~~n~~~~~~~Vv~a~~QVVaG~nY~l~v~~~~~~~~~~y~a~V~~~pW~   80 (91)
T 3ima_B            1 ALMGGIVDVEGAQNSAEVEELARFAVDEHNKKENALLQFSRLVKAKQQVVSGIMHHLTVEVIEGGKKKVYEAKVWVQAWL   80 (91)
T ss_dssp             CCBTCEEC------CHHHHHHHHHHHHHHHHHHTCCCEEEEEEEEEEEESSSEEEEEEEEEEETTEEEEEEEEEEEEGGG
T ss_pred             CCCcccccCcCCCCCHHHHHHHHHHHHHHHHhcCCceEEEEEEEEEEEEeccEEEEEEEEEecCCceEEEEEEEEEeeCC
Confidence            3789999953 6899999999999999999999999999999999999999999999999999988899999999999 9


Q ss_pred             CceEEEeEEeC
Q 037584          104 QIKKLTSFHRL  114 (114)
Q Consensus       104 ~~~~l~sf~~~  114 (114)
                      |+++|+||+|+
T Consensus        81 ~~~~l~~F~~~   91 (91)
T 3ima_B           81 NSKKLHEFSPI   91 (91)
T ss_dssp             TEEEEEEEEC-
T ss_pred             CcEEEEEEEeC
Confidence            99999999985

>1eqk_A Oryzacystatin-I; alpha and beta proteins, cystatin-like fold, cystatin/monellin superfamily, phytocystatin family; NMR {Oryza sativa japonica group} SCOP: d.17.1.2

Probab=99.96  E-value=4.8e-29  Score=161.29  Aligned_cols=91  Identities=33%  Similarity=0.641  Sum_probs=85.7

Q ss_pred             CccccceeeeCCCCCChHHHHHHHHHHHHHHhhCCCceEEEEEEEEEEEEeceEeEEEEEEEeeCCCCceEEEEEEEec-
Q 037584           24 DAALVGGWKPIEDPNDPHVIEIGQFAVVEYNKQSKMELKFQSVEKGETQVVSGTNYRLVVAAQDGTATNKYQAVVWENA-  102 (114)
Q Consensus        24 ~~~~~GG~~~i~~~~d~~v~~~~~~Av~~~n~~~~~~~~~~~V~~a~~QVVaG~nY~l~v~~~~~~~~~~~~~~V~~~p-  102 (114)
                      ..+++|||+++.+++||+++++++||+.+||+++++.|.|.+|+++++|||+|+||+|+++++++++.+.|+++||++| 
T Consensus         5 ~~~~~GG~~~~~~~~~~~v~~~a~~Av~~~n~~~n~~~~~~~Vv~a~~QVVaG~~Y~l~v~~~~~~~~~~c~~~V~~~PW   84 (102)
T 1eqk_A            5 GGPVLGGVEPVGNENDLHLVDLARFAVTEHNKKANSLLEFEKLVSVKQQVVAGTLYYFTIEVKEGDAKKLYEAKVWEKPW   84 (102)
T ss_dssp             SCSCSSSSEEECCTTCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEEEESSSEEEEEEEEEEETTCCEEEEEEEEEBTT
T ss_pred             cCCCCcccccCCCCCCHHHHHHHHHHHHHHHhhcCCceEEEEEEEEEEEEeccEEEEEEEEEecCCCcEEEEEEEEEeeC
Confidence            3568999999645899999999999999999999999999999999999999999999999999998999999999999 


Q ss_pred             CCceEEEeEEeC
Q 037584          103 KQIKKLTSFHRL  114 (114)
Q Consensus       103 ~~~~~l~sf~~~  114 (114)
                      .++++|++|++.
T Consensus        85 ~~~~~l~~f~c~   96 (102)
T 1eqk_A           85 MDFKELQEFKPV   96 (102)
T ss_dssp             TTBCCEEEEECC
T ss_pred             CCceEEEEEEcC
Confidence            999999999874

>3ul5_A Canecystatin-1; defense, hydrolase inhibitor; 2.30A {Saccharum officinarum} PDB: 3ul6_A*

Probab=99.96  E-value=3.2e-29  Score=169.97  Aligned_cols=91  Identities=33%  Similarity=0.545  Sum_probs=76.2

Q ss_pred             CccccceeeeCC--CCCChHHHHHHHHHHHHHHhhCCCceEEEEEEEEEEEEeceEeEEEEEEEee-CCCCceEEEEEEE
Q 037584           24 DAALVGGWKPIE--DPNDPHVIEIGQFAVVEYNKQSKMELKFQSVEKGETQVVSGTNYRLVVAAQD-GTATNKYQAVVWE  100 (114)
Q Consensus        24 ~~~~~GG~~~i~--~~~d~~v~~~~~~Av~~~n~~~~~~~~~~~V~~a~~QVVaG~nY~l~v~~~~-~~~~~~~~~~V~~  100 (114)
                      ...++|||++++  +++||+++++++||+.+||+++|+.|.|.+|+++++|||||+||+|+|++.+ +++.+.|+++||+
T Consensus        42 ~~~~~GG~~~i~~~~~ndpeVqela~fAV~e~Nkksn~~l~~~kVv~a~sQVVAG~nY~L~V~a~d~~g~~~~y~a~Vwe  121 (139)
T 3ul5_A           42 RVGMVGDVRDAPAGHENDLEAIELARFAVAEHNSKTNAMLEFERLVKVRHQVVAGTMHHFTVQVKEAGGGKKLYEAKVWE  121 (139)
T ss_dssp             --------------CTTCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEEEEEEEEEEEEEEECSSCCEEEEEEEEEE
T ss_pred             CCCCCCCcccccCCCCCCHHHHHHHHHHHHHHHHhCCCceeEEEEEEEEEEEecCEEEEEEEEEecCCCCeEEEEEEEEE
Confidence            466899999963  6899999999999999999999999999999999999999999999999999 7788999999999


Q ss_pred             ec-CCceEEEeEEeC
Q 037584          101 NA-KQIKKLTSFHRL  114 (114)
Q Consensus       101 ~p-~~~~~l~sf~~~  114 (114)
                      +| +|+++|+||+|+
T Consensus       122 kPW~n~k~L~sF~p~  136 (139)
T 3ul5_A          122 KVWENFKQLQSFQPV  136 (139)
T ss_dssp             ETTTTEEEEEEEEEC
T ss_pred             eeCCCceEEEEEEEc
Confidence            99 999999999985

>2w9q_A Multicystatin; protease inhibitor, thiol protease inhibitor, hydrolase inhibitor; 2.50A {Solanum tuberosum} PDB: 2w9p_A

Probab=99.95  E-value=7.6e-28  Score=151.48  Aligned_cols=85  Identities=29%  Similarity=0.549  Sum_probs=80.3

Q ss_pred             eeeeCCCCCChHHHHHHHHHHHHHHhhCCCceEEEEEEEEEEEEeceEeEEEEEEEeeC-CCCceEEEEEEEec-CCceE
Q 037584           30 GWKPIEDPNDPHVIEIGQFAVVEYNKQSKMELKFQSVEKGETQVVSGTNYRLVVAAQDG-TATNKYQAVVWENA-KQIKK  107 (114)
Q Consensus        30 G~~~i~~~~d~~v~~~~~~Av~~~n~~~~~~~~~~~V~~a~~QVVaG~nY~l~v~~~~~-~~~~~~~~~V~~~p-~~~~~  107 (114)
                      ||+++.|++||+++++++||+.+||+++++.+.+.+|+++++|||||+||+|+++++++ ++.+.|+++||++| .++++
T Consensus         1 G~~~~~~~~d~~v~~~~~fAv~~~n~~~n~~~~~~~vv~a~~QVVaG~~Y~l~v~~~~~~~~~~~c~~~V~~~PW~~~~~   80 (87)
T 2w9q_A            1 GIVNVPNPNNTKFQELARFAIQDYNKKQNAHLEFVENLNVKEQVVAGIMYYITLAATDDAGKKKIYKAKIWVKEWEDFKK   80 (87)
T ss_dssp             CCEECSSTTSHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEEEEESSSEEEEEEEEEEETTTEEEEEEEEEEEEGGGTEEE
T ss_pred             CcccCCCCCCHHHHHHHHHHHHHHHhhcCCceEEEEEEEEEEEEeccEEEEEEEEEecCCCCeEEEEEEEEEeeCCCceE
Confidence            79997679999999999999999999999999999999999999999999999999995 56778999999999 99999


Q ss_pred             EEeEEeC
Q 037584          108 LTSFHRL  114 (114)
Q Consensus       108 l~sf~~~  114 (114)
                      |++|+|+
T Consensus        81 l~~f~~~   87 (87)
T 2w9q_A           81 VVEFKLV   87 (87)
T ss_dssp             EEEEEEC
T ss_pred             EEeeccC
Confidence            9999986

>2l4v_A Cystatin; protease inhibitor, hydrolase inhibitor; NMR {Ananas comosus}

Probab=99.95  E-value=8e-28  Score=162.73  Aligned_cols=90  Identities=32%  Similarity=0.490  Sum_probs=85.7

Q ss_pred             CccccceeeeCCC---CCChHHHHHHHHHHHHHHhhCCCceEEEEEEEEEEEEeceEeEEEEEEEeeCCCCceEEEEEEE
Q 037584           24 DAALVGGWKPIED---PNDPHVIEIGQFAVVEYNKQSKMELKFQSVEKGETQVVSGTNYRLVVAAQDGTATNKYQAVVWE  100 (114)
Q Consensus        24 ~~~~~GG~~~i~~---~~d~~v~~~~~~Av~~~n~~~~~~~~~~~V~~a~~QVVaG~nY~l~v~~~~~~~~~~~~~~V~~  100 (114)
                      ..+++|||+++ +   ++|++++++++||+.+||+++|+.|.|.+|+++++|||+|+||+|+++++++++.+.|+++||.
T Consensus        39 ~~~~~GG~~~i-~~~~~nd~evqe~a~fAv~e~N~~sn~~~~f~kVv~a~~QVVAG~nY~l~vev~~~~~~~~c~a~Vw~  117 (135)
T 2l4v_A           39 EHPIMGGIYDA-PLNNENGFDKEDLARFAVREYNNKNNALLEFVRVVKAKEQVVSGMMHYLTVEVNDAGKKKLYEAKVWE  117 (135)
T ss_dssp             CCCCCCCSSCC-CCTTTTSHHHHHHHHHHHHHHHHHTSCCCEEEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred             cCCCCCccCcC-CCCCCCCHHHHHHHHHHHHHHHhhcCCceEEEEEEEEEEEEecCEEEEEEEEEecCCceEEEEEEEEE
Confidence            36689999996 6   8999999999999999999999999999999999999999999999999999888999999999


Q ss_pred             ec-CCceEEEeEEeC
Q 037584          101 NA-KQIKKLTSFHRL  114 (114)
Q Consensus       101 ~p-~~~~~l~sf~~~  114 (114)
                      +| .|+++|++|+|+
T Consensus       118 kPW~n~~~L~~f~~~  132 (135)
T 2l4v_A          118 QVWMNFRQLQEFTYL  132 (135)
T ss_dssp             CSSSCCEEEEEEEEC
T ss_pred             ecCCCceEEEEEEec
Confidence            99 999999999985

>2kxg_A Aspartic protease inhibitor; sqapi, protein, hydrolase inhib; NMR {Cucurbita maxima}

Probab=99.95  E-value=5.7e-27  Score=150.00  Aligned_cols=84  Identities=33%  Similarity=0.520  Sum_probs=79.3

Q ss_pred             ccccceeeeCCCCCChHHHHHHHHHHHHHHhhCCCceEEEEEEEEEEEEeceE-----eEEEEEEEeeC--CCCceEEEE
Q 037584           25 AALVGGWKPIEDPNDPHVIEIGQFAVVEYNKQSKMELKFQSVEKGETQVVSGT-----NYRLVVAAQDG--TATNKYQAV   97 (114)
Q Consensus        25 ~~~~GG~~~i~~~~d~~v~~~~~~Av~~~n~~~~~~~~~~~V~~a~~QVVaG~-----nY~l~v~~~~~--~~~~~~~~~   97 (114)
                      .+++|||+++ |+|||+++++++||+.+||++   .+.|++|+++  |||+|+     ||+|++++.++  ++.+.|+++
T Consensus         3 ~~~~Gg~~~i-~~nd~~v~e~a~fAv~e~N~~---~l~~~~Vv~a--QVVaG~~~~~~~Y~L~l~~~~~~~~~~~~y~a~   76 (95)
T 2kxg_A            3 GPAIGEVIGI-SVNDPRVKEIAEFALKQHAEQ---NLILAGVDAG--QIIKGIPHWDNYYNLILSAKHSPHEFSKFYNVV   76 (95)
T ss_dssp             CCSSCCCCCC-CTTCHHHHHHHHHHHHHCCTT---CCEEEEEEEE--EEECSSCSSCCEEEEEEEEESCTTSCCEEEEEE
T ss_pred             CCCCCcceEC-CCCCHHHHHHHHHHHHHHHhh---CcEEEEEEEE--eEecCccccCccEEEEEEEecCCCCCceEEEEE
Confidence            5689999997 999999999999999999987   6899999999  999999     99999999998  677899999


Q ss_pred             EEEec-CCceEEEeEEeC
Q 037584           98 VWENA-KQIKKLTSFHRL  114 (114)
Q Consensus        98 V~~~p-~~~~~l~sf~~~  114 (114)
                      ||++| +|+++|+||+|+
T Consensus        77 Vw~kpW~n~~~L~sF~~~   94 (95)
T 2kxg_A           77 VLEKASDNSLKLVAFVPL   94 (95)
T ss_dssp             EEEETTTTEEEEEEEEEC
T ss_pred             EEEccCCCcEEEEEeEec
Confidence            99999 999999999985

>2o9u_X Monellin chain B and monellin chain A; alternative conformations, 3-10 polyproline II helix, plant protein; 1.15A {Dioscoreophyllum cumminsii} SCOP: d.17.1.1 PDB: 3pxm_A 1m9g_A 3pyj_A 1fa3_A 1iv7_A 3q2p_A 1iv9_A 1mnl_A 1mol_A 1fuw_A 4mon_B 3mon_B 1krl_B 4mon_A 1krl_A 3mon_A 2q33_B* 2q33_A*

Probab=99.93  E-value=7.7e-26  Score=144.39  Aligned_cols=80  Identities=33%  Similarity=0.469  Sum_probs=74.3

Q ss_pred             cceeeeCCCCCChHHHHHHHHHHHHHHhhC-CCceEEEEEEEE-----------EEEEeceEeEEEEEEEeeCCCCceEE
Q 037584           28 VGGWKPIEDPNDPHVIEIGQFAVVEYNKQS-KMELKFQSVEKG-----------ETQVVSGTNYRLVVAAQDGTATNKYQ   95 (114)
Q Consensus        28 ~GG~~~i~~~~d~~v~~~~~~Av~~~n~~~-~~~~~~~~V~~a-----------~~QVVaG~nY~l~v~~~~~~~~~~~~   95 (114)
                      .|||.+| |+ ||+++++|+||+.+||++. ++.++|.+|+++           ++| |+|+||+|++++.++    .|+
T Consensus         1 ~Ggw~~i-dv-~~~iqela~FAV~e~nk~~~~~~L~f~~Vv~~~~~~~~~~~~~~~Q-VaG~nY~Ltlea~d~----~ye   73 (97)
T 2o9u_X            1 MGEWEII-DI-GPFTQNLGKFAVDEENKIGQYGRLTFNKVIRPCMKKTIYENEGFRE-IKGYEYQLYVYASDK----LFR   73 (97)
T ss_dssp             -CCCEEE-CC-SHHHHHHHHHHHHHHHHHCTTCSCCEEEEEEEEEEEEEECSSSSCS-EEEEEEEEEEEETTE----EC-
T ss_pred             CCCceEC-CC-CHHHHHHHHHHHHHHhccccCCCcEEEEEEEcccccccccchhhee-eccEEEEEEEEEeCC----ceE
Confidence            4999998 99 9999999999999999986 788999999999           999 999999999999987    899


Q ss_pred             EEEEEec-CCceEEEeEEeC
Q 037584           96 AVVWENA-KQIKKLTSFHRL  114 (114)
Q Consensus        96 ~~V~~~p-~~~~~l~sf~~~  114 (114)
                      |.||++| +++++|+||++.
T Consensus        74 A~V~ekpw~n~k~L~sF~~~   93 (97)
T 2o9u_X           74 ADISEDYKTRGRKLLRFNGP   93 (97)
T ss_dssp             CEEEEETTTCCEEEEECCCC
T ss_pred             EEEEEecCCCcEEeeEccCC
Confidence            9999999 999999999863

>1yvb_I Cystatin; cysteine protease-inhibitor complex, hydrolase-hydrolase INH complex; 2.70A {Gallus gallus} SCOP: d.17.1.2 PDB: 1a67_A 1cew_I 1a90_A

Probab=99.93  E-value=6.7e-25  Score=143.05  Aligned_cols=86  Identities=30%  Similarity=0.344  Sum_probs=79.9

Q ss_pred             cccceeeeCCCCCChHHHHHHHHHHHHHHhhCCCce--EEEEEEEEEEEEeceEeEEEEEEEeeCC--------------
Q 037584           26 ALVGGWKPIEDPNDPHVIEIGQFAVVEYNKQSKMEL--KFQSVEKGETQVVSGTNYRLVVAAQDGT--------------   89 (114)
Q Consensus        26 ~~~GG~~~i~~~~d~~v~~~~~~Av~~~n~~~~~~~--~~~~V~~a~~QVVaG~nY~l~v~~~~~~--------------   89 (114)
                      +++|||+++ +++||+++++++||+.+||+++++.+  .+.+|++|++|||+|++|+|+++++++.              
T Consensus         1 ~~~Gg~~~~-~~~d~~v~~~~~~av~~~N~~s~~~~~~~l~~v~~a~~QvVaG~~y~l~v~v~~t~C~k~~~~~~~C~~~   79 (111)
T 1yvb_I            1 RLLGAPVPV-DENDEGLQRALQFAMAEYNRASNDKYSSRVVRVISAKRQLVSGIKYILQVEIGRTTCPKSSGDLQSCEFH   79 (111)
T ss_dssp             CCTTCEECC-CTTCHHHHHHHHHHHHHHHHHCCCSSCEEEEEECCCEEEESSSEEEEEEEEEEEBSSCSSSSCSSCCCBC
T ss_pred             CCCCCceEC-CCCCHHHHHHHHHHHHHHHHhCCCcceeEEEEEEEEEEEEECCeEEEEEEEEEccccCCCCCCcccCCCC
Confidence            378999996 89999999999999999999999887  8899999999999999999999999974              


Q ss_pred             ------CCceEEEEEEEec-CCceEEEeEE
Q 037584           90 ------ATNKYQAVVWENA-KQIKKLTSFH  112 (114)
Q Consensus        90 ------~~~~~~~~V~~~p-~~~~~l~sf~  112 (114)
                            +.+.|.++||.+| .++++|++|+
T Consensus        80 ~~~~~~~~~~C~~~V~~~pW~~~~~l~~~~  109 (111)
T 1yvb_I           80 DEPEMAKYTTCTFVVYSIPWLNQIKLLESK  109 (111)
T ss_dssp             SSTTTSCCEEEEEEEEEEGGGTEEEEEEEE
T ss_pred             CCcccccccEEEEEEEecCCCCccEeeccc
Confidence                  3578999999999 9999999986

>1roa_A Cystatin D; inhibitor of cysteine pepidases, protein binding; 1.80A {Homo sapiens} SCOP: d.17.1.2 PDB: 1rn7_A

Probab=99.92  E-value=1.7e-24  Score=143.58  Aligned_cols=87  Identities=28%  Similarity=0.296  Sum_probs=77.4

Q ss_pred             cc-ccceeeeCCCCCChHHHHHHHHHHHHHHhh-CCCceEE--EEEEEEEEEEeceEeEEEEEEEeeCC-----------
Q 037584           25 AA-LVGGWKPIEDPNDPHVIEIGQFAVVEYNKQ-SKMELKF--QSVEKGETQVVSGTNYRLVVAAQDGT-----------   89 (114)
Q Consensus        25 ~~-~~GG~~~i~~~~d~~v~~~~~~Av~~~n~~-~~~~~~~--~~V~~a~~QVVaG~nY~l~v~~~~~~-----------   89 (114)
                      .. ++|||+++ +++||+++++++||+.+||++ +++.|.|  .+|+++++|||+|+||+|+++++++.           
T Consensus         7 ~~~~~Gg~~~~-~~~d~~v~~~a~~Av~~~N~~~s~~~~~~~l~~v~~a~~QVVaG~~Y~l~v~v~~t~C~k~~~~~~~C   85 (122)
T 1roa_A            7 SRTLAGGIHAT-DLNDKSVQRALDFAISEYNKVINKDEYYSRPLQVMAAYQQIVGGVNYYFNVKFGRTTCTKSQPNLDNC   85 (122)
T ss_dssp             -----CCEEEE-CTTSHHHHHHHHHHHHHHHHTTCCCSEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEETTSSCCSSC
T ss_pred             cCcCCCCCeEC-CCCCHHHHHHHHHHHHHHHhcccCCCceeEEEEEEEEEEEEECCeEEEEEEEEEccccCCCCCCcccC
Confidence            55 89999996 899999999999999999999 9998855  99999999999999999999999874           


Q ss_pred             ---------CCceEEEEEEEec-CCceEEEeEE
Q 037584           90 ---------ATNKYQAVVWENA-KQIKKLTSFH  112 (114)
Q Consensus        90 ---------~~~~~~~~V~~~p-~~~~~l~sf~  112 (114)
                               +.+.|.++||.+| .++++|++|+
T Consensus        86 ~~~~~~~~~~~~~C~~~V~~~PW~~~~~l~~~~  118 (122)
T 1roa_A           86 PFNDQPKLKEEEFCSFQINEVPWEDKISILNYK  118 (122)
T ss_dssp             CBCCSTTCCCCEEEEEEEEEETTTTEEEEEEEE
T ss_pred             CCCCCcccccceEEEEEEEecccCCccEECccc
Confidence                     3578999999999 9999999986

>3mwz_A Sialostatin L2; antiparallel beta-sheet, hydrolase inhibitor; HET: MSE; 1.52A {Ixodes scapularis} PDB: 3lh4_A 3li7_A

Probab=99.92  E-value=4.2e-24  Score=140.48  Aligned_cols=87  Identities=31%  Similarity=0.511  Sum_probs=77.7

Q ss_pred             ccccceeeeCCCC-CChHHHHHHHHHHHHHHhhCC-Cce--EEEEEEEEEEEEeceEeEEEEEEEeeC------------
Q 037584           25 AALVGGWKPIEDP-NDPHVIEIGQFAVVEYNKQSK-MEL--KFQSVEKGETQVVSGTNYRLVVAAQDG------------   88 (114)
Q Consensus        25 ~~~~GG~~~i~~~-~d~~v~~~~~~Av~~~n~~~~-~~~--~~~~V~~a~~QVVaG~nY~l~v~~~~~------------   88 (114)
                      ..++|||+++ ++ +||+++++++||+.+||++++ +.|  .+.+|+++++|||+|+||+|+++++++            
T Consensus         3 ~~~~Gg~~~~-~~~~~~~v~~~~~~av~~~N~~sn~~~~~~~~~~V~~a~~QvVaG~~Y~l~v~v~~t~C~K~~~~~~~~   81 (115)
T 3mwz_A            3 LALRGGYRER-SNQDDPEYLEMAHYATSTWSAQQPGKTHFDTVVEVMKVETQTVAGTNYRLTLKVAESTCELTSTYNKDT   81 (115)
T ss_dssp             CCCSSCCEEE-CTTSCTHHHHHHHHHHHHHHHTSTTCCEEEEEEEEEEEEEEESSSEEEEEEEEEEEEEEETTSCCCTTT
T ss_pred             cccCCcceEC-CCCCCHHHHHHHHHHHHHHHhhcCCcccceeeeeeeEEEeeccCCEEEEEEEEEEeccccCCCcCCccc
Confidence            4689999997 67 999999999999999999988 665  668999999999999999999999653            


Q ss_pred             ------CCCceEEEEEEEecCCceEEEeEE
Q 037584           89 ------TATNKYQAVVWENAKQIKKLTSFH  112 (114)
Q Consensus        89 ------~~~~~~~~~V~~~p~~~~~l~sf~  112 (114)
                            ++...|.++||.+|.++++|++|+
T Consensus        82 C~~~~~~~~~~C~~~V~~~P~~~~~l~~~~  111 (115)
T 3mwz_A           82 CQANANAAQRTCTTVIYRNMQGEKSINSFE  111 (115)
T ss_dssp             CCCCTTSCEEEEEEEEEECTTSCEEEEEEE
T ss_pred             CCCCCCCCeeEEEEEEEECCCCEEEEcccc
Confidence                  256789999999998899999986

>3gax_A Cystatin-C; cysteine protease inhibitor, 3D domain swapping, protein AGG amyloid, protein engineering, twinning; 1.70A {Homo sapiens} SCOP: d.17.1.2 PDB: 1g96_A 1tij_A 3qrd_A 3ps8_A 3nx0_A 3sva_A 3s67_A 1r4c_A

Probab=99.92  E-value=3.4e-24  Score=141.95  Aligned_cols=89  Identities=26%  Similarity=0.233  Sum_probs=75.6

Q ss_pred             CCccccceeeeCCCCCChHHHHHHHHHHHHHHhhCCCc--eEEEEEEEEEEEEeceEeEEEEEEEeeCC-----------
Q 037584           23 TDAALVGGWKPIEDPNDPHVIEIGQFAVVEYNKQSKME--LKFQSVEKGETQVVSGTNYRLVVAAQDGT-----------   89 (114)
Q Consensus        23 ~~~~~~GG~~~i~~~~d~~v~~~~~~Av~~~n~~~~~~--~~~~~V~~a~~QVVaG~nY~l~v~~~~~~-----------   89 (114)
                      .+++++|||+++ +++||+++++++||+.+||+++++.  |.+.+|+++++|||+|++|+|+++++++.           
T Consensus         5 ~~~~~~Gg~~~~-~~~d~~v~~~a~~av~~~N~~sn~~~~~~~~~v~~a~~QvVaG~~Y~l~v~v~~t~C~K~~~~~~~C   83 (120)
T 3gax_A            5 KPPRLVGGPMDA-SVEEEGVRRALDFAVGEYNKASNDMYHSRACQVVRARKQIVAGVNYFLDVELCRTTCTKTQPNLDNC   83 (120)
T ss_dssp             -------CCEEE-CTTSHHHHHHHHHHHHHHHHHCCCSEEEEEEEEEEEEEEESSSEEEEEEEEEEEEEEESCC--CCCC
T ss_pred             ccCccCCCCEeC-CCCCHHHHHHHHHHHHHHHhccCCcceeeEEEEEEEEEEEecCeEEEEEEEEEeeeccCCCCCcccC
Confidence            357899999996 8999999999999999999999988  57799999999999999999999999852           


Q ss_pred             ---------CCceEEEEEEEec-CCceEEEeEE
Q 037584           90 ---------ATNKYQAVVWENA-KQIKKLTSFH  112 (114)
Q Consensus        90 ---------~~~~~~~~V~~~p-~~~~~l~sf~  112 (114)
                               +...|.++||.+| .++++|++++
T Consensus        84 ~~~~~~~~~~~~~C~~~V~~~PW~~~~~l~~~~  116 (120)
T 3gax_A           84 PFHDQPHLKRKAFCSFQIYAVPWQGTMTLSKST  116 (120)
T ss_dssp             CBCSSHHHHCCEEEEEEEEEETTTTEEEEEEEE
T ss_pred             CCcCCccccCceEEEEEEEecCCCCeEEeccce
Confidence                     3578999999999 9999999875

>2ch9_A Cystatin F; inhibitor, cysteine protease inhibitor, glycoprotein; HET: NAG FUL; 2.10A {Homo sapiens}

Probab=99.91  E-value=1.6e-23  Score=140.78  Aligned_cols=88  Identities=24%  Similarity=0.303  Sum_probs=79.4

Q ss_pred             CccccceeeeCCCCCChHHHHHHHHHHHHHHhhCCCce--EEEEEEEEEEEEeceEeEEEEEEEeeCC------------
Q 037584           24 DAALVGGWKPIEDPNDPHVIEIGQFAVVEYNKQSKMEL--KFQSVEKGETQVVSGTNYRLVVAAQDGT------------   89 (114)
Q Consensus        24 ~~~~~GG~~~i~~~~d~~v~~~~~~Av~~~n~~~~~~~--~~~~V~~a~~QVVaG~nY~l~v~~~~~~------------   89 (114)
                      ..+++|||+++ +++||++++++++|+.+||+++++.|  .+.+|++|++|||+|+||+|+++++++.            
T Consensus        13 ~~~~~Gg~~~~-~~~d~ev~e~a~~Av~~~N~~sn~~~~~~l~~V~~a~~QVVaG~~Y~l~v~v~~t~C~K~~~~~~~~C   91 (131)
T 2ch9_A           13 SRVKPGFPKTI-KTNDPGVLQAARYSVEKFNNCTNDMFLFKESRITRALVQIVKGLKYMLEVEIGRTTCKKNQHLRLDDC   91 (131)
T ss_dssp             CSSCCCCCEEC-CTTCHHHHHHHHHHHHHHHHHSCCSEEEEEEEEEEEEEEESSSEEEEEEEEEEEEEEETTSCCCGGGC
T ss_pred             cccCCCCCeeC-CCCCHHHHHHHHHHHHHHHHhCCCCcceEEEEEEEeeeEecCCeEEEEEEEEEcccccCCCCCccccC
Confidence            46789999996 89999999999999999999999886  5699999999999999999999999752            


Q ss_pred             ------C---CceEEEEEEEec-CCceEEEeEE
Q 037584           90 ------A---TNKYQAVVWENA-KQIKKLTSFH  112 (114)
Q Consensus        90 ------~---~~~~~~~V~~~p-~~~~~l~sf~  112 (114)
                            .   ...|.++||.+| .++++|++|.
T Consensus        92 ~~~~~~~~~~~~~C~~~V~~~PW~~~~~l~~f~  124 (131)
T 2ch9_A           92 DFQTNHTLKQTLSCYSEVWVVPWLQHFEVPVLR  124 (131)
T ss_dssp             CBCCSTTTCCEEEEEEEEEEEGGGTEEEEEEEE
T ss_pred             CcccCcccccccEEEEEEEEecCCCeeEEEEEe
Confidence                  1   137999999999 9999999995

>3l0r_A Cystatin-2, OMC2; SOFT TICK, protease inhibitor, thiol protease INHI hydrolase inhibitor; 2.45A {Ornithodoros moubata}

Probab=99.91  E-value=6.6e-24  Score=139.89  Aligned_cols=84  Identities=29%  Similarity=0.557  Sum_probs=75.9

Q ss_pred             cccceeeeCCCCCChHHHHHHHHHHHHHHhhCCCce--EEEEEEEEEEEEeceEeEEEEEEEeeC---------------
Q 037584           26 ALVGGWKPIEDPNDPHVIEIGQFAVVEYNKQSKMEL--KFQSVEKGETQVVSGTNYRLVVAAQDG---------------   88 (114)
Q Consensus        26 ~~~GG~~~i~~~~d~~v~~~~~~Av~~~n~~~~~~~--~~~~V~~a~~QVVaG~nY~l~v~~~~~---------------   88 (114)
                      .++|||+++ +++||+++++++||+.  |+++++.|  .+.+|++|++|||+|+||+|+++++++               
T Consensus         2 ~~~GG~~~i-~~~d~~v~~~a~~Av~--N~~s~~~~~~~~~kV~~a~~QVVaG~~Y~i~v~v~~t~C~K~~~~~~~~~C~   78 (115)
T 3l0r_A            2 SIPGGWTRQ-DPTEARFLELAHFATS--SQTEGREFYDTVVTVKEVETQVVAGMNYKLTIEISPSVCKIGEVQYSAEQCV   78 (115)
T ss_dssp             -CCCSCEEE-CTTCHHHHHHHHHHHT--TCCTTCSEEEEEEEEEEEEEEESSSEEEEEEEEEEEEEEEBTTBCCCTTTCC
T ss_pred             CCcccceeC-CCCCHHHHHHHHHHHh--ccccCCCcceEEEEEEEEEEEEEeeEEEEEEEEEecccccccccccccccCc
Confidence            479999996 8899999999999999  88888876  669999999999999999999999864               


Q ss_pred             ----CCCceEEEEEEEec-CCceEEEeEE
Q 037584           89 ----TATNKYQAVVWENA-KQIKKLTSFH  112 (114)
Q Consensus        89 ----~~~~~~~~~V~~~p-~~~~~l~sf~  112 (114)
                          ++...|.++||.+| .++++|++|.
T Consensus        79 ~~~~~~~~~C~~~V~~~PW~~~~~l~~~~  107 (115)
T 3l0r_A           79 PKDAQQKSTCVAVIYHVPWQNQKSVTSYR  107 (115)
T ss_dssp             BSCTTSCEEEEEEEEEEGGGTEEEEEEEE
T ss_pred             ccCCCceeEEEEEEEEecCCCeeEEEEEE
Confidence                25678999999999 9999999996

>1cyu_A Cystatin A, stefin A; proteinase inhibitor (cysteine); NMR {Homo sapiens} SCOP: d.17.1.2 PDB: 1cyv_A 1gd3_A 1dvc_A 1dvd_A 1n9j_A 1nb3_I* 1nb5_I* 3k9m_C 3kfq_C 3kse_D* 1gd4_A

Probab=99.88  E-value=6.8e-24  Score=136.10  Aligned_cols=84  Identities=24%  Similarity=0.311  Sum_probs=77.7

Q ss_pred             cccceeeeCCCCCChHHHHHHHHHHHHHHhhCCCceEEEEEEEEEEEEeceEeEEEEEEEeeCCCCceEEEEEEEe-c--
Q 037584           26 ALVGGWKPIEDPNDPHVIEIGQFAVVEYNKQSKMELKFQSVEKGETQVVSGTNYRLVVAAQDGTATNKYQAVVWEN-A--  102 (114)
Q Consensus        26 ~~~GG~~~i~~~~d~~v~~~~~~Av~~~n~~~~~~~~~~~V~~a~~QVVaG~nY~l~v~~~~~~~~~~~~~~V~~~-p--  102 (114)
                      +++|||+++ +++||+++++++||+.++|+++|+.|.+.+|++|++|||||+||+|+++++++.   -++++||+. |  
T Consensus         1 ~~~GG~~~~-~~~d~ev~~~a~~av~~~n~~~n~~~~~~~vv~a~~QVVaG~nY~l~v~~~~~~---c~~~~V~~~l~~~   76 (98)
T 1cyu_A            1 MIPGGLSEA-KPATPEIQEIVDKVKPQLEEKTNETYGKLEAVQYKTQVVAGTNYYIKVRAGDNK---YLHLKVFKSLPGQ   76 (98)
T ss_dssp             CCCSSCSSE-EESCTTHHHHHHHTCTTTTTSSCCSSSCEEEEEEEEECSSSCEEEEEEEECSSC---BCEEEEECCCSSS
T ss_pred             CCCcccccC-CCCCHHHHHHHHHHHHHHHhhcCCCcceEEEEEEEEEEecceEEEEEEEEcCCc---EEEEEEecCCCCC
Confidence            479999996 899999999999999999999999999999999999999999999999999986   679999987 5  


Q ss_pred             CCceEEEeEEe
Q 037584          103 KQIKKLTSFHR  113 (114)
Q Consensus       103 ~~~~~l~sf~~  113 (114)
                      .+.++|+||..
T Consensus        77 ~~~~~l~~~q~   87 (98)
T 1cyu_A           77 NEDLVLTGYQV   87 (98)
T ss_dssp             CCCCEEEEEEC
T ss_pred             CCCeEEEEEec
Confidence            78999999964

>2oct_A Cystatin B; stefin, amyloid, domain-swapping, hand shaking, PR isomerization, protein binding; 1.40A {Homo sapiens} PDB: 1stf_I*

Probab=99.88  E-value=9.3e-23  Score=131.08  Aligned_cols=84  Identities=17%  Similarity=0.234  Sum_probs=76.6

Q ss_pred             cccceeeeCCCCCChHHHHHHHHHHHHHHhhCCCceEEEEEEEEEEEEeceEeEEEEEEEeeCCCCceEEEEEEEe-c--
Q 037584           26 ALVGGWKPIEDPNDPHVIEIGQFAVVEYNKQSKMELKFQSVEKGETQVVSGTNYRLVVAAQDGTATNKYQAVVWEN-A--  102 (114)
Q Consensus        26 ~~~GG~~~i~~~~d~~v~~~~~~Av~~~n~~~~~~~~~~~V~~a~~QVVaG~nY~l~v~~~~~~~~~~~~~~V~~~-p--  102 (114)
                      +|+|||+++ +++||++++++++|+.++|++.|..+.+.+++++++|||||+||+|++++++++   .++++||+. |  
T Consensus         1 mm~GG~~~~-~~~~~evq~i~~~a~~~~n~~~~~~~~~~~vv~~~tQVVAG~NY~ikv~v~~~~---~~h~~vy~~lp~~   76 (98)
T 2oct_A            1 MMSGAPSAT-QPATAETQHIADQVRSQLEEKYNKKFPVFKAVSFKSQVVAGTNYFIKVHVGDED---FVHLRVFQSLPHE   76 (98)
T ss_dssp             -CCSSCCCC-EECCHHHHHHHHHHHHHHHHHHTSCCSCCEEEEEEEEEEEEEEEEEEEECSTTC---EEEEEEEEESSTT
T ss_pred             CCcccCcCC-CCCCHHHHHHHHHHHHHHHhhcCCccceeEEEEEEEEEeCCEEEEEEEEECCCc---EEEEEEEecCCCC
Confidence            479999995 789999999999999999999998888889999999999999999999999986   789999997 5  


Q ss_pred             CCceEEEeEEe
Q 037584          103 KQIKKLTSFHR  113 (114)
Q Consensus       103 ~~~~~l~sf~~  113 (114)
                      .+..+|+||..
T Consensus        77 ~~~~~l~~~q~   87 (98)
T 2oct_A           77 NKSLTLSNYQT   87 (98)
T ss_dssp             CCCEEEEEEEE
T ss_pred             CCceEEEEEec
Confidence            68999999963

>2bo9_B Human latexin, MUM; metallocarboxypeptidase, X-RAY endogenous protein inhibitor, metalloprotease carboxypeptidase, hydrolase; HET: NAG; 1.6A {Homo sapiens} SCOP: d.17.1.5 d.17.1.5 PDB: 1wnh_A

Probab=96.59  E-value=0.085  Score=37.62  Aligned_cols=67  Identities=19%  Similarity=0.169  Sum_probs=55.3

Q ss_pred             CCCChHHHHHHHHHHHHHHhhCCCce---EEEEEEEEEEEEec--eEeEEEEEEEeeCC---CCceEEEEEEEec
Q 037584           36 DPNDPHVIEIGQFAVVEYNKQSKMEL---KFQSVEKGETQVVS--GTNYRLVVAAQDGT---ATNKYQAVVWENA  102 (114)
Q Consensus        36 ~~~d~~v~~~~~~Av~~~n~~~~~~~---~~~~V~~a~~QVVa--G~nY~l~v~~~~~~---~~~~~~~~V~~~p  102 (114)
                      +++.-..+++|+.|...+|-..++++   .+.+|.+|..++++  |.+|.+++.+.+-.   ....|.|+|+-.+
T Consensus         4 ~psh~~a~rAA~vA~hy~N~~~gSP~~l~~L~~V~~a~a~~ip~~G~Ky~l~Fs~e~~~~~~~~~~CsA~Vlf~~   78 (222)
T 2bo9_B            4 PPTNYPASRAALVAQNYINYQQGTPHRVFEVQKVKQASMEDIPGRGHKYRLKFAVEEIIQKQVKVNCTAEVLYPS   78 (222)
T ss_dssp             CTTSHHHHHHHHHHHHHHHHHHCBTTBCEEEEEEEEEEEEEETTTEEEEEEEEEEEETTTCCCEEEEEEEEEEEC
T ss_pred             CCcchHHHHHHHHHHHHhhcccCCCceeeehhhhhhhhhhhccCCCcEEEEEEEeeeeecCCceeEEEEEEEEcc
Confidence            56677789999999999999877764   55789999999995  68999999999863   4578999998764

>1kwi_A Protegrin-3 precursor; cathelicidin motif, disulfide, MAD, selenocystine, antimicrobial protein; 2.19A {Sus scrofa} SCOP: d.17.1.3 PDB: 1lxe_A 1n5h_A 1n5p_A 1pfp_A

Probab=92.07  E-value=0.7  Score=29.08  Aligned_cols=62  Identities=15%  Similarity=0.025  Sum_probs=39.5

Q ss_pred             hHHHHHHHHHHHHHHhhCCCceEEEEEEEEEEEEe----ceEeEEEEEEEeeCC------------------CCceEEEE
Q 037584           40 PHVIEIGQFAVVEYNKQSKMELKFQSVEKGETQVV----SGTNYRLVVAAQDGT------------------ATNKYQAV   97 (114)
Q Consensus        40 ~~v~~~~~~Av~~~n~~~~~~~~~~~V~~a~~QVV----aG~nY~l~v~~~~~~------------------~~~~~~~~   97 (114)
                      -.++++...|+..||+++.+...| +.+++.-+..    -|+.+.+.+.+.++-                  ..+.|...
T Consensus         3 lsY~EAv~~Av~~~N~~S~~~nlF-RLl~~~p~p~~~~d~~~~~~v~FtIkETvC~~~~~~~p~~CdFke~G~vk~C~Gt   81 (101)
T 1kwi_A            3 LSYREAVLRAVDRLNEQSSEANLY-RLLELDQPPKADEDPGTPKPVSFTVKETVCPRPTRQPPELCDFKENGRVKQCVGT   81 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHCCSSEEE-EEEEEC---------CCCEEEEEEEEEEEEESSCCSCGGGSCBCTTCCEEEEEEE
T ss_pred             cCHHHHHHHHHHHHhcCCCcccee-eeecccCCCccCCCCCCcceeEEEEeeeecCCCCCCCcccCCccCCCeeeeceEE
Confidence            458899999999999998765433 3344443332    356788888887752                  23567777


Q ss_pred             EEEec
Q 037584           98 VWENA  102 (114)
Q Consensus        98 V~~~p  102 (114)
                      |.-.+
T Consensus        82 v~~~~   86 (101)
T 1kwi_A           82 VTLDQ   86 (101)
T ss_dssp             ECCC-
T ss_pred             EEecC
Confidence            77655

>2ux9_A Dodecin; flavoprotein; HET: FMN COA; 1.4A {Thermus thermophilus} SCOP: d.230.2.1 PDB: 2cz8_A* 2deg_A 2deh_A 2dev_A 2v21_A* 2v18_A* 2vyx_A* 2v19_A*

Probab=83.71  E-value=4.7  Score=23.48  Aligned_cols=48  Identities=15%  Similarity=0.163  Sum_probs=37.6

Q ss_pred             CChHHHHHHHHHHHHHHhhCCCceEEEEEEEEEEEEece--EeEEEEEEEe
Q 037584           38 NDPHVIEIGQFAVVEYNKQSKMELKFQSVEKGETQVVSG--TNYRLVVAAQ   86 (114)
Q Consensus        38 ~d~~v~~~~~~Av~~~n~~~~~~~~~~~V~~a~~QVVaG--~nY~l~v~~~   86 (114)
                      ++....++++-|+.+-.+ +-..+...+|.+-+..|.+|  ..|+.+++++
T Consensus        14 S~~S~edAi~nAi~~Ask-Tl~ni~~~eV~e~~~~v~dgkv~~yqv~lkV~   63 (69)
T 2ux9_A           14 SEEGLEAAIQAALARARK-TLRHLDWFEVKEIRGTIGEAGVKEYQVVLEVG   63 (69)
T ss_dssp             ESSCHHHHHHHHHHHHHH-HCCCEEEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCCCHHHHHHHHHHHHHh-cccCCeEEEEEEEEEEEeCCcEEEEEEEEEEE
Confidence            445677888888888764 33568889999999999998  4798888875

>3onr_A Protein transport protein SECE2; calcium dodecin, calcium binding protein, dodecamer, imuuno antigen, metal binding protein; 1.80A {Mycobacterium tuberculosis}

Probab=83.53  E-value=4.5  Score=23.79  Aligned_cols=48  Identities=17%  Similarity=0.158  Sum_probs=36.9

Q ss_pred             CChHHHHHHHHHHHHHHhhCCCceEEEEEEEEEEEEece--EeEEEEEEEe
Q 037584           38 NDPHVIEIGQFAVVEYNKQSKMELKFQSVEKGETQVVSG--TNYRLVVAAQ   86 (114)
Q Consensus        38 ~d~~v~~~~~~Av~~~n~~~~~~~~~~~V~~a~~QVVaG--~nY~l~v~~~   86 (114)
                      ++....++.+.|+.+-.+ +-..+...+|.+-+..|.+|  ..|+.+++++
T Consensus        14 S~~S~edAi~nAi~~Ask-Tl~ni~~~eV~e~~~~v~dgkv~~yqv~lKV~   63 (72)
T 3onr_A           14 SPTSWEQAAAEAVQRARD-SVDDIRVARVIEQDMAVDSAGKITYRIKLEVS   63 (72)
T ss_dssp             ESSCHHHHHHHHHHHHHH-HCSCCCEEEEEEEEEEECTTCCEEEEEEEEEE
T ss_pred             CCCCHHHHHHHHHHHHHh-cccCCeEEEEEEEEEEEeCCcEEEEEEEEEEE
Confidence            445677888888888764 33567888999999999988  5798888875

>2vxa_A Dodecin; flavoprotein, flavin, riboflavin, lumichrome, archaea; HET: RBF; 2.60A {Halorhodospira halophila}

Probab=83.46  E-value=5  Score=23.57  Aligned_cols=48  Identities=13%  Similarity=0.194  Sum_probs=37.6

Q ss_pred             CChHHHHHHHHHHHHHHhhCCCceEEEEEEEEEEEEece--EeEEEEEEEe
Q 037584           38 NDPHVIEIGQFAVVEYNKQSKMELKFQSVEKGETQVVSG--TNYRLVVAAQ   86 (114)
Q Consensus        38 ~d~~v~~~~~~Av~~~n~~~~~~~~~~~V~~a~~QVVaG--~nY~l~v~~~   86 (114)
                      ++....++++-|+.+-++ +-..+...+|.+-+..|.+|  ..|+.+++++
T Consensus        15 S~~S~edAi~nAi~~Ask-Tl~ni~~~eV~e~r~~v~dgki~~yqV~lKV~   64 (72)
T 2vxa_A           15 SPNGIEEAVNNAIARAGE-TLRHLRWFEVVDTRGHIEGGRVNHWQVTVKVG   64 (72)
T ss_dssp             ESSCHHHHHHHHHHHHHH-HCCCEEEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCCCHHHHHHHHHHHHHh-hccCCeEEEEEEEEEEEeCCcEEEEEEEEEEE
Confidence            455677888888888764 33568889999999999998  4788888875

>2yiz_A Dodecin; flavoprotein, flavin binding protein, protein-engineering, P storage protein; HET: COA FMN GOL; 1.70A {Mycobacterium tuberculosis} PDB: 3oqt_A 2yj0_A*

Probab=83.17  E-value=5  Score=23.37  Aligned_cols=48  Identities=13%  Similarity=0.140  Sum_probs=37.8

Q ss_pred             CChHHHHHHHHHHHHHHhhCCCceEEEEEEEEEEEEece--EeEEEEEEEe
Q 037584           38 NDPHVIEIGQFAVVEYNKQSKMELKFQSVEKGETQVVSG--TNYRLVVAAQ   86 (114)
Q Consensus        38 ~d~~v~~~~~~Av~~~n~~~~~~~~~~~V~~a~~QVVaG--~nY~l~v~~~   86 (114)
                      ++....++++-|+.+-.+ +-..+...+|.+-+..|.+|  ..|+.+++++
T Consensus        14 S~~S~edAi~nAi~~Ask-Tl~ni~~~eV~e~~~~v~dgkv~~yqv~lkv~   63 (69)
T 2yiz_A           14 SPDGVDAAIQGGLARAAQ-TMRALDWFEVQSIRGHLVDGAVAHFQVTMKVG   63 (69)
T ss_dssp             ETTCHHHHHHHHHHHHHH-HCCCEEEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCCCHHHHHHHHHHHHHh-cccCCeEEEEEEEEEEEeCCcEEEEEEEEEEE
Confidence            456677888888888764 33568889999999999998  4798888875

>2cc6_A VNG1446H, dodecin; flavoprotein, flavin, flavin-like ligands; HET: LUM; 1.27A {Halobacterium salinarum} SCOP: d.230.2.1 PDB: 2cc7_A* 2cc8_A* 2cc9_A 2ccb_A* 2ccc_A* 2cif_A* 2cjc_A* 1mog_A* 2vx9_A* 2cie_A* 2vkf_A* 2vkg_A*

Probab=82.30  E-value=4.7  Score=23.45  Aligned_cols=48  Identities=8%  Similarity=0.077  Sum_probs=37.5

Q ss_pred             CChHHHHHHHHHHHHHHhhCCCceEEEEEEEEEEEEece--EeEEEEEEEe
Q 037584           38 NDPHVIEIGQFAVVEYNKQSKMELKFQSVEKGETQVVSG--TNYRLVVAAQ   86 (114)
Q Consensus        38 ~d~~v~~~~~~Av~~~n~~~~~~~~~~~V~~a~~QVVaG--~nY~l~v~~~   86 (114)
                      ++....++++.|+.+-++ +-..+...+|.+-+..|.+|  ..|+.+++++
T Consensus        12 S~~S~edAi~nAi~~Ask-Tl~ni~~~eV~e~~~~v~dgkv~~yqv~lKV~   61 (68)
T 2cc6_A           12 SEESFTAAADDAIDRAED-TLDNVVWAEVVDQGVEIGAVEERTYQTEVQVA   61 (68)
T ss_dssp             ESSCHHHHHHHHHHHHHH-HCSCEEEEEEEEEEEECTTSSSCEEEEEEEEE
T ss_pred             CCCCHHHHHHHHHHHHHh-cccCCeEEEEEEEEEEEeCCcEEEEEEEEEEE
Confidence            445677888888888764 33568889999999999888  5899988875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	114
d1eqka_	102	d.17.1.2 (A:) Phytocystatin {Japanese rice (Oryza	2e-28
d1roaa_	111	d.17.1.2 (A:) Cystatin D {Human (Homo sapiens) [Ta	4e-14
d1cewi_	108	d.17.1.2 (I:) Cystatin {Chicken (Gallus gallus) [T	9e-12
d1r4ca_	110	d.17.1.2 (A:) Cystatin C {Human (Homo sapiens) [Ta	3e-11

>d1eqka_ d.17.1.2 (A:) Phytocystatin {Japanese rice (Oryza sativa), subsp. japonica, oryzacystatin-I [TaxId: 4530]} Length = 102

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Cystatins
domain: Phytocystatin
species: Japanese rice (Oryza sativa), subsp. japonica, oryzacystatin-I [TaxId: 4530]

 Score = 97.3 bits (242), Expect = 2e-28
 Identities = 30/89 (33%), Positives = 53/89 (59%), Gaps = 1/89 (1%)

Query: 24  DAALVGGWKPIEDPNDPHVIEIGQFAVVEYNKQSKMELKFQSVEKGETQVVSGTNYRLVV 83
              ++GG +P+ + ND H++++ +FAV E+NK++   L+F+ +   + QVV+GT Y   +
Sbjct: 5   GGPVLGGVEPVGNENDLHLVDLARFAVTEHNKKANSLLEFEKLVSVKQQVVAGTLYYFTI 64

Query: 84  AAQDGTATNKYQAVVWENA-KQIKKLTSF 111
             ++G A   Y+A VWE      K+L  F
Sbjct: 65  EVKEGDAKKLYEAKVWEKPWMDFKELQEF 93

>d1roaa_ d.17.1.2 (A:) Cystatin D {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Cystatins
domain: Cystatin D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.2 bits (148), Expect = 4e-14
 Identities = 21/69 (30%), Positives = 25/69 (36%), Gaps = 4/69 (5%)

Query: 29 GGWKPIEDPNDPHVIEIGQFAVVEYNKQSKME---LKFQSVEKGETQVVSGTNYRLVVAA 85
          GG     D ND  V     FA+ EYNK    +    +   V     Q+V G NY   V  
Sbjct: 1  GGIHAT-DLNDKSVQRALDFAISEYNKVINKDEYYSRPLQVMAAYQQIVGGVNYYFNVKF 59

Query: 86 QDGTATNKY 94
             T T   
Sbjct: 60 GRTTCTKSQ 68

>d1cewi_ d.17.1.2 (I:) Cystatin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 108

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Cystatins
domain: Cystatin
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 55.0 bits (132), Expect = 9e-12
 Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 3/68 (4%)

Query: 29 GGWKPIEDPNDPHVIEIGQFAVVEYNKQSKMELKFQ--SVEKGETQVVSGTNYRLVVAAQ 86
          G   P+ D ND  +    QFA+ EYN+ S  +   +   V   + Q+VSG  Y L V   
Sbjct: 1  GAPVPV-DENDEGLQRALQFAMAEYNRASNDKYSSRVVRVISAKRQLVSGIKYILQVEIG 59

Query: 87 DGTATNKY 94
            T     
Sbjct: 60 RTTCPKSS 67

>d1r4ca_ d.17.1.2 (A:) Cystatin C {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Cystatins
domain: Cystatin C
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.5 bits (128), Expect = 3e-11
 Identities = 21/68 (30%), Positives = 26/68 (38%), Gaps = 3/68 (4%)

Query: 29 GGWKPIEDPNDPHVIEIGQFAVVEYNKQSKMELKFQ--SVEKGETQVVSGTNYRLVVAAQ 86
          GG        +  V     FAV EYNK S      +   V +   Q+V+G NY L V   
Sbjct: 1  GGPMDA-SVEEEGVRRALDFAVGEYNKASNDMYHSRALQVVRARKQIVAGVNYFLDVELG 59

Query: 87 DGTATNKY 94
            T T   
Sbjct: 60 RTTCTKTQ 67

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	114
d1eqka_	102	Phytocystatin {Japanese rice (Oryza sativa), subsp	99.97
d1roaa_	111	Cystatin D {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1cewi_	108	Cystatin {Chicken (Gallus gallus) [TaxId: 9031]}	99.89
d1r4ca_	110	Cystatin C {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1stfi_	98	Cystatin B (stefin B) {Human (Homo sapiens) [TaxId	99.77
d1nb5i_	98	Cystatin A (stefin A) {Human (Homo sapiens) [TaxId	99.72
d1kwia_	98	Cathelicidin motif of protegrin-3 {Pig (Sus scrofa	99.36
d2bo9b1	98	Latexin {Human (Homo sapiens) [TaxId: 9606]}	97.44
d2o9ux1	96	Monellin, B & A chains together {Serendipity berry	86.11
d2cc6a1	64	Flavin-binding protein dodecin {Archaeon Halobacte	81.26

>d1eqka_ d.17.1.2 (A:) Phytocystatin {Japanese rice (Oryza sativa), subsp. japonica, oryzacystatin-I [TaxId: 4530]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Cystatins
domain: Phytocystatin
species: Japanese rice (Oryza sativa), subsp. japonica, oryzacystatin-I [TaxId: 4530]

Probab=99.97  E-value=1.5e-30  Score=167.11  Aligned_cols=91  Identities=33%  Similarity=0.641  Sum_probs=87.3

Q ss_pred             CccccceeeeCCCCCChHHHHHHHHHHHHHHhhCCCceEEEEEEEEEEEEeceEeEEEEEEEeeCCCCceEEEEEEEec-
Q 037584           24 DAALVGGWKPIEDPNDPHVIEIGQFAVVEYNKQSKMELKFQSVEKGETQVVSGTNYRLVVAAQDGTATNKYQAVVWENA-  102 (114)
Q Consensus        24 ~~~~~GG~~~i~~~~d~~v~~~~~~Av~~~n~~~~~~~~~~~V~~a~~QVVaG~nY~l~v~~~~~~~~~~~~~~V~~~p-  102 (114)
                      ...++|||.++.|++||+++++++||+.+||+++++.|+|++|++|++|||+|+||+|++++.+++..+.|+++||++| 
T Consensus         5 ~~~l~GG~~~i~d~nd~~v~e~a~~Av~~~N~~~~~~~~~vkV~~a~~QVVaG~~Y~i~v~~~~~~~~k~c~~~Vw~~pW   84 (102)
T d1eqka_           5 GGPVLGGVEPVGNENDLHLVDLARFAVTEHNKKANSLLEFEKLVSVKQQVVAGTLYYFTIEVKEGDAKKLYEAKVWEKPW   84 (102)
T ss_dssp             SCSCSSSSEEECCTTCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEEEESSSEEEEEEEEEEETTCCEEEEEEEEEBTT
T ss_pred             CCcccCCcccCCCCCCHHHHHHHHHHHHHHhhcCCCceEEEEEEEEeeeeccceeEEEEEEEccCCccEEEEEEEEEeeC
Confidence            5779999999768999999999999999999999999999999999999999999999999999998999999999999 


Q ss_pred             CCceEEEeEEeC
Q 037584          103 KQIKKLTSFHRL  114 (114)
Q Consensus       103 ~~~~~l~sf~~~  114 (114)
                      +++++|++|++.
T Consensus        85 ~~~~~l~~f~~~   96 (102)
T d1eqka_          85 MDFKELQEFKPV   96 (102)
T ss_dssp             TTBCCEEEEECC
T ss_pred             CCccEEEEEEEc
Confidence            999999999984

>d1roaa_ d.17.1.2 (A:) Cystatin D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Cystatins
domain: Cystatin D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.6e-23  Score=135.59  Aligned_cols=83  Identities=27%  Similarity=0.293  Sum_probs=74.5

Q ss_pred             ceeeeCCCCCChHHHHHHHHHHHHHHhhCCC-ce--EEEEEEEEEEEEeceEeEEEEEEEeeCC----------------
Q 037584           29 GGWKPIEDPNDPHVIEIGQFAVVEYNKQSKM-EL--KFQSVEKGETQVVSGTNYRLVVAAQDGT----------------   89 (114)
Q Consensus        29 GG~~~i~~~~d~~v~~~~~~Av~~~n~~~~~-~~--~~~~V~~a~~QVVaG~nY~l~v~~~~~~----------------   89 (114)
                      |||.++ |++||+++++++||+.+||+++++ .|  .+++|++|++|||+|++|+|+++++++.                
T Consensus         1 GG~~~~-~~~d~~v~~~~~~Av~~~N~~sn~~~~~~~l~~V~~a~~QVVaG~~Y~l~~~i~~T~C~K~~~~~~~c~~~~~   79 (111)
T d1roaa_           1 GGIHAT-DLNDKSVQRALDFAISEYNKVINKDEYYSRPLQVMAAYQQIVGGVNYYFNVKFGRTTCTKSQPNLDNCPFNDQ   79 (111)
T ss_dssp             CCEEEE-CTTSHHHHHHHHHHHHHHHHTTCCCSEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEETTSSCCSSCCBCCS
T ss_pred             CCCccC-CCCCHHHHHHHHHHHHHHHHhcCCccceeEEEEEEEEEEEEecCcEEEEEEEEEecccccccccccccccccC
Confidence            899996 999999999999999999998874 44  5699999999999999999999997652                


Q ss_pred             ----CCceEEEEEEEec-CCceEEEeEE
Q 037584           90 ----ATNKYQAVVWENA-KQIKKLTSFH  112 (114)
Q Consensus        90 ----~~~~~~~~V~~~p-~~~~~l~sf~  112 (114)
                          +...|+++||.+| .++.+|++++
T Consensus        80 ~~~~~~~~C~~~V~~~PW~~~~~v~~~~  107 (111)
T d1roaa_          80 PKLKEEEFCSFQINEVPWEDKISILNYK  107 (111)
T ss_dssp             TTCCCCEEEEEEEEEETTTTEEEEEEEE
T ss_pred             ccccceEEEEEEEEEcccCCceEEeecc
Confidence                3568999999999 9999999885

>d1cewi_ d.17.1.2 (I:) Cystatin {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Cystatins
domain: Cystatin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.89  E-value=6.5e-23  Score=131.87  Aligned_cols=83  Identities=30%  Similarity=0.325  Sum_probs=75.1

Q ss_pred             ceeeeCCCCCChHHHHHHHHHHHHHHhhCCCceE--EEEEEEEEEEEeceEeEEEEEEEeeCC-----------------
Q 037584           29 GGWKPIEDPNDPHVIEIGQFAVVEYNKQSKMELK--FQSVEKGETQVVSGTNYRLVVAAQDGT-----------------   89 (114)
Q Consensus        29 GG~~~i~~~~d~~v~~~~~~Av~~~n~~~~~~~~--~~~V~~a~~QVVaG~nY~l~v~~~~~~-----------------   89 (114)
                      |||.++ +++||+++++++||+.+||+++++.|.  +++|++|++|||+|++|+|+++++++.                 
T Consensus         1 Gg~~~~-~~~d~~v~~~~~~Av~~~N~~s~~~~~~~~~~V~~a~~QVVaG~~Y~l~~~i~~T~C~k~~~~~~~c~~~~~~   79 (108)
T d1cewi_           1 GAPVPV-DENDEGLQRALQFAMAEYNRASNDKYSSRVVRVISAKRQLVSGIKYILQVEIGRTTCPKSSGDLQSCEFHDEP   79 (108)
T ss_dssp             CCCEEC-CTTCHHHHHHHHHHTHHHHTTSCCSEEEEEEEEEEEEEEESSSEEEEEEEEEEEEEEETTCTTHHHHHHHHCS
T ss_pred             CCCccC-CCCCHHHHHHHHHHHHHHHhcCCCcceEEEEEEEEEEEEeecCcEEEEEEEEEecccccccccccccccccCc
Confidence            899996 999999999999999999999999875  589999999999999999999997642                 


Q ss_pred             ---CCceEEEEEEEec-CCceEEEeEE
Q 037584           90 ---ATNKYQAVVWENA-KQIKKLTSFH  112 (114)
Q Consensus        90 ---~~~~~~~~V~~~p-~~~~~l~sf~  112 (114)
                         +...|+++||.+| .++++|++++
T Consensus        80 ~~~~~~~C~~~V~~~pW~~~~~v~~~~  106 (108)
T d1cewi_          80 EMAKYTTCTFVVYSIPWLNQIKLLESK  106 (108)
T ss_dssp             SCSCEEEEEEEEEEETTTTEEEEEEEE
T ss_pred             ccCceEEEEEEEEEeccCCceEeeecc
Confidence               2468999999999 9999999874

>d1r4ca_ d.17.1.2 (A:) Cystatin C {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Cystatins
domain: Cystatin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=9.6e-23  Score=131.45  Aligned_cols=83  Identities=25%  Similarity=0.233  Sum_probs=75.3

Q ss_pred             ceeeeCCCCCChHHHHHHHHHHHHHHhhCCCceE--EEEEEEEEEEEeceEeEEEEEEEeeCC-----------------
Q 037584           29 GGWKPIEDPNDPHVIEIGQFAVVEYNKQSKMELK--FQSVEKGETQVVSGTNYRLVVAAQDGT-----------------   89 (114)
Q Consensus        29 GG~~~i~~~~d~~v~~~~~~Av~~~n~~~~~~~~--~~~V~~a~~QVVaG~nY~l~v~~~~~~-----------------   89 (114)
                      |||.++ ++|||+++++++||+.+||+++++.|.  +++|++|++|||+|++|+|+++++++.                 
T Consensus         1 Gg~~~~-~~~d~~v~~~~~~Av~~~N~~s~~~~~~~~~kV~~a~~QvVaG~~Y~l~~~i~~T~C~k~~~~~~~c~~~~~~   79 (110)
T d1r4ca_           1 GGPMDA-SVEEEGVRRALDFAVGEYNKASNDMYHSRALQVVRARKQIVAGVNYFLDVELGRTTCTKTQPNLDNCPFHDQP   79 (110)
T ss_dssp             CCCEEC-CTTSHHHHHHHHHHHHHHHHHCCCSEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEETTSSCGGGCCBCCST
T ss_pred             CCCccC-CCCCHHHHHHHHHHHHHHHhhCCccceeEEEEEEEEEEEeccCCEEEEEEEEeecccccCccccccCccccCc
Confidence            899995 999999999999999999999999875  489999999999999999999997652                 


Q ss_pred             ---CCceEEEEEEEec-CCceEEEeEE
Q 037584           90 ---ATNKYQAVVWENA-KQIKKLTSFH  112 (114)
Q Consensus        90 ---~~~~~~~~V~~~p-~~~~~l~sf~  112 (114)
                         +...|+++||.+| .++++|++++
T Consensus        80 ~~~~~~~C~~~V~~~PW~~~~~l~~~~  106 (110)
T d1r4ca_          80 HLKRKAFCSFQIYAVPWQGTMTLSKST  106 (110)
T ss_dssp             TTCCEEEEEEEEEEEGGGTEEEEEEEE
T ss_pred             cccceEEEEEEEEEeccCCceEEeeee
Confidence               2457999999999 9999999875

>d1stfi_ d.17.1.2 (I:) Cystatin B (stefin B) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Cystatins
domain: Cystatin B (stefin B)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=4.7e-19  Score=111.66  Aligned_cols=83  Identities=17%  Similarity=0.238  Sum_probs=75.8

Q ss_pred             cccceeeeCCCCCChHHHHHHHHHHHHHHhhCCCceEEEEEEEEEEEEeceEeEEEEEEEeeCCCCceEEEEEEEe-c-C
Q 037584           26 ALVGGWKPIEDPNDPHVIEIGQFAVVEYNKQSKMELKFQSVEKGETQVVSGTNYRLVVAAQDGTATNKYQAVVWEN-A-K  103 (114)
Q Consensus        26 ~~~GG~~~i~~~~d~~v~~~~~~Av~~~n~~~~~~~~~~~V~~a~~QVVaG~nY~l~v~~~~~~~~~~~~~~V~~~-p-~  103 (114)
                      +|+|||++ ..+.+|++|++++....+.+++.|..|...++++.++|||||+||+|+++++++.   .++++||+. | .
T Consensus         1 mm~GG~s~-~~~at~Eiq~i~d~Vk~~~e~k~~~k~~~f~av~yktQvVaG~NYfIKV~vg~~~---~~HlrV~~~Lp~~   76 (98)
T d1stfi_           1 MMSGAPSA-TQPATAETQHIADQVRSQLEEKYNKKFPVFKAVSFKSQVVAGTNYFIKVHVGDED---FVHLRVFQSLPHE   76 (98)
T ss_dssp             CCBSCCCC-CEECCHHHHHHHHTTHHHHHHHHTCCCSCCEEEEEEEEESSEEEEEEEEECSSSC---EEEEEEEEECGGG
T ss_pred             CcCCCCCC-CCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEEEEEEcceeEEEEEEeCCCc---EEEEEEeccCCCC
Confidence            58999999 5789999999999999999999999887779999999999999999999999987   899999997 7 4


Q ss_pred             -CceEEEeEE
Q 037584          104 -QIKKLTSFH  112 (114)
Q Consensus       104 -~~~~l~sf~  112 (114)
                       +..+|+++.
T Consensus        77 ~~~l~L~~~q   86 (98)
T d1stfi_          77 NKPLTLSNYQ   86 (98)
T ss_dssp             CCCCEEEEEE
T ss_pred             CCceEEEEEe
Confidence             568999985

>d1nb5i_ d.17.1.2 (I:) Cystatin A (stefin A) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Cystatins
domain: Cystatin A (stefin A)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.4e-17  Score=104.57  Aligned_cols=83  Identities=24%  Similarity=0.328  Sum_probs=75.2

Q ss_pred             cccceeeeCCCCCChHHHHHHHHHHHHHHhhCCCceEEEEEEEEEEEEeceEeEEEEEEEeeCCCCceEEEEEEEe-c-C
Q 037584           26 ALVGGWKPIEDPNDPHVIEIGQFAVVEYNKQSKMELKFQSVEKGETQVVSGTNYRLVVAAQDGTATNKYQAVVWEN-A-K  103 (114)
Q Consensus        26 ~~~GG~~~i~~~~d~~v~~~~~~Av~~~n~~~~~~~~~~~V~~a~~QVVaG~nY~l~v~~~~~~~~~~~~~~V~~~-p-~  103 (114)
                      +|+|||++ ..+.+|++|++++....+.+++.|..+.-.+.++.++|||||+||+|+++++++.   ..+++||+. | .
T Consensus         1 mm~GG~s~-~~~at~Eiq~I~d~Vk~~le~k~g~~~~~F~av~yktQvVAGtNYfIKV~vG~~~---~vHlrVf~~Lp~~   76 (98)
T d1nb5i_           1 MIPGGLSE-AKPATPEIQEIVDKVKPQLEEKTNETYGKLEAVQYKTQVVAGTNYYIKVRAGDNK---YMHLKVFKSLPGQ   76 (98)
T ss_dssp             CCTTSCCC-CEECCHHHHHHHHHHHHHHHHHHCCCCSCCEEEEEEEEESSEEEEEEEEECSSSC---EEEEEEEEECTTS
T ss_pred             CccCCCCC-CCCCCHHHHHHHHHHHHHHHHhcCCCcceEEEEEEEEEEEcceeEEEEEEeCCCc---EEEEEEeccCCCC
Confidence            58999999 5889999999999999999999998887778899999999999999999999987   899999997 7 4


Q ss_pred             -CceEEEeEE
Q 037584          104 -QIKKLTSFH  112 (114)
Q Consensus       104 -~~~~l~sf~  112 (114)
                       +..+|+++.
T Consensus        77 ~~~l~L~~~q   86 (98)
T d1nb5i_          77 NEDLVLTGYQ   86 (98)
T ss_dssp             CCCCEEEEEE
T ss_pred             CCccEEEEEE
Confidence             578999885

>d1kwia_ d.17.1.3 (A:) Cathelicidin motif of protegrin-3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Cathelicidin motif
domain: Cathelicidin motif of protegrin-3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.36  E-value=7.8e-13  Score=82.75  Aligned_cols=69  Identities=16%  Similarity=0.082  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHHHHhhCCCce--EEEEEEEEEEEEe-ceEeEEEEEEEeeCC------------------CCceEEEEEE
Q 037584           41 HVIEIGQFAVVEYNKQSKMEL--KFQSVEKGETQVV-SGTNYRLVVAAQDGT------------------ATNKYQAVVW   99 (114)
Q Consensus        41 ~v~~~~~~Av~~~n~~~~~~~--~~~~V~~a~~QVV-aG~nY~l~v~~~~~~------------------~~~~~~~~V~   99 (114)
                      .+++++++|+.+||+++++.+  .+.+|.+++.|+| +|++|+|++.++++.                  ..+.|++.||
T Consensus         3 sy~eav~~Al~~~N~~s~~~~~f~l~~v~~a~~q~v~~g~~y~l~f~i~eT~C~k~~~~~~~~C~~~~~~~~~~C~~~V~   82 (98)
T d1kwia_           3 SYREAVLRAVDRLNEQSSEANLYRLLELDQPPKADEDPGTPKPVSFTVKETVCPRPTRQPPELCDFKENGRVKQCVGTVT   82 (98)
T ss_dssp             HHHHHHHHHHHHHHHHCCSSEEEEEEEEC---------CCCEEEEEEEEEEEEESSCCSCGGGSCBCTTCCEEEEEEEEC
T ss_pred             CHHHHHHHHHHHHHcCCCCcccEEEEEEeecceeeecCCcEEEEEEEEEEeecCCcCCCChHHCccccCCcceEEEEEEE
Confidence            588999999999999999875  5589999999999 899999999998763                  3467999999


Q ss_pred             Eec-CCceEEE
Q 037584          100 ENA-KQIKKLT  109 (114)
Q Consensus       100 ~~p-~~~~~l~  109 (114)
                      ..| .+...|+
T Consensus        83 ~~pw~~~~~vt   93 (98)
T d1kwia_          83 LDQIKDPLDIT   93 (98)
T ss_dssp             CC----CCEEE
T ss_pred             EcCcCCEEEEE
Confidence            999 7777664

>d2bo9b1 d.17.1.5 (B:1-98) Latexin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Latexin-like
domain: Latexin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=0.0036  Score=37.92  Aligned_cols=68  Identities=21%  Similarity=0.178  Sum_probs=55.7

Q ss_pred             eCCCCCChHHHHHHHHHHHHHHhhCCCce---EEEEEEEEEEEEec--eEeEEEEEEEeeCC---CCceEEEEEEEe
Q 037584           33 PIEDPNDPHVIEIGQFAVVEYNKQSKMEL---KFQSVEKGETQVVS--GTNYRLVVAAQDGT---ATNKYQAVVWEN  101 (114)
Q Consensus        33 ~i~~~~d~~v~~~~~~Av~~~n~~~~~~~---~~~~V~~a~~QVVa--G~nY~l~v~~~~~~---~~~~~~~~V~~~  101 (114)
                      +| +++.-..+++|+-|...+|-..+++.   .+.+|.+|..++++  |-+|+|++.+.+-.   ....|.|+|+-.
T Consensus         2 ei-~psh~pA~rAA~vA~hy~N~~~GSP~rl~~L~~V~~a~~e~ip~~G~Ky~L~Fs~e~~~~~e~~~~CsA~Vlfp   77 (98)
T d2bo9b1           2 EI-PPTNYPASRAALVAQNYINYQQGTPHRVFEVQKVKQASMEDIPGRGHKYRLKFAVEEIIQKQVKVNCTAEVLYP   77 (98)
T ss_dssp             BC-CTTSHHHHHHHHHHHHHHHHHHCBTTBCEEEEEEEEEEEEEETTTEEEEEEEEEEEETTTCCCEEEEEEEEEEE
T ss_pred             CC-CCcchHHHHHHHHHHHHhhcccCCCceeeehhHHHhhhhhhccccCcEEEEEEEhhhcccccccceeEEEEEEc
Confidence            44 67778889999999999999877763   55899999999995  68999999998853   334799999874

>d2o9ux1 d.17.1.1 (X:1001-1096) Monellin, B & A chains together {Serendipity berry (Dioscoreophyllum cumminsii) [TaxId: 3457]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Monellin
domain: Monellin, B & A chains together
species: Serendipity berry (Dioscoreophyllum cumminsii) [TaxId: 3457]

Probab=86.11  E-value=1.8  Score=24.35  Aligned_cols=78  Identities=33%  Similarity=0.498  Sum_probs=53.8

Q ss_pred             ceeeeCCCCCChHHHHHHHHHHHHHHhhCC-CceEEEEEEEEEEEE----------eceEeEEEEEEEeeCCCCceEEEE
Q 037584           29 GGWKPIEDPNDPHVIEIGQFAVVEYNKQSK-MELKFQSVEKGETQV----------VSGTNYRLVVAAQDGTATNKYQAV   97 (114)
Q Consensus        29 GG~~~i~~~~d~~v~~~~~~Av~~~n~~~~-~~~~~~~V~~a~~QV----------VaG~nY~l~v~~~~~~~~~~~~~~   97 (114)
                      |.|.-| |. -|--|.+..||+.+-|+-.. ..+.|.+|++-...-          ..|..|.+.+-+.+.    .+.+.
T Consensus         1 geweii-di-gpftqnlgkfavdeenkigqygrltfnkvirpcmkktiyenegfreikgyeyqlyvyasdk----lfrad   74 (96)
T d2o9ux1           1 GEWEII-DI-GPFTQNLGKFAVDEENKIGQYGRLTFNKVIRPCMKKTIYENEGFREIKGYEYQLYVYASDK----LFRAD   74 (96)
T ss_dssp             CCCEEE-CC-SHHHHHHHHHHHHHHHHHCTTCSCCEEEEEEEEEEEEEECSSSSCSEEEEEEEEEEEETTE----EC-CE
T ss_pred             CCceEE-Ee-cchhhhhcceeecccccccccceeehhHHhHHHhhhhhhcccCceeccCcEEEEEEEecch----hhhhh
Confidence            567765 55 48889999999999887533 467888888754332          357778888877664    67777


Q ss_pred             EEEec-CCceEEEeEE
Q 037584           98 VWENA-KQIKKLTSFH  112 (114)
Q Consensus        98 V~~~p-~~~~~l~sf~  112 (114)
                      +-+.- ..-++|.-|+
T Consensus        75 isedyktrgrkllrfn   90 (96)
T d2o9ux1          75 ISEDYKTRGRKLLRFN   90 (96)
T ss_dssp             EEEETTTCCEEEEECC
T ss_pred             hhhhhhhccceeEecc
Confidence            77665 5556666664

>d2cc6a1 d.230.2.1 (A:2-65) Flavin-binding protein dodecin {Archaeon Halobacterium salinarum [TaxId: 2242]}

class: Alpha and beta proteins (a+b)
fold: Dodecin subunit-like
superfamily: Dodecin-like
family: Dodecin-like
domain: Flavin-binding protein dodecin
species: Archaeon Halobacterium salinarum [TaxId: 2242]

Probab=81.26  E-value=2.6  Score=22.85  Aligned_cols=48  Identities=8%  Similarity=0.066  Sum_probs=36.6

Q ss_pred             CChHHHHHHHHHHHHHHhhCCCceEEEEEEEEEEEEece--EeEEEEEEEe
Q 037584           38 NDPHVIEIGQFAVVEYNKQSKMELKFQSVEKGETQVVSG--TNYRLVVAAQ   86 (114)
Q Consensus        38 ~d~~v~~~~~~Av~~~n~~~~~~~~~~~V~~a~~QVVaG--~nY~l~v~~~   86 (114)
                      ++..+.++.+.|+.+-.+. -..+...+|.+-+..|.+|  ..|+.+++++
T Consensus        11 S~~S~edAi~~Ai~~AskT-l~ni~~~eV~e~~~~v~dgkv~~yqv~lKv~   60 (64)
T d2cc6a1          11 SEESFTAAADDAIDRAEDT-LDNVVWAEVVDQGVEIGAVEERTYQTEVQVA   60 (64)
T ss_dssp             ESSCHHHHHHHHHHHHHHH-CSCEEEEEEEEEEEECTTSSSCEEEEEEEEE
T ss_pred             CCCCHHHHHHHHHHHHhhC-ccCceEEEEEEEEEEEeCCcEEEEEEEEEEE
Confidence            4456778888888876643 3567888999988888888  5798888875