Citrus Sinensis ID: 037592
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 337 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LR69 | 609 | Pentatricopeptide repeat- | yes | no | 0.976 | 0.540 | 0.615 | 1e-120 | |
| Q9SIT7 | 697 | Pentatricopeptide repeat- | no | no | 0.967 | 0.467 | 0.396 | 3e-76 | |
| Q9SY02 | 781 | Pentatricopeptide repeat- | no | no | 0.955 | 0.412 | 0.406 | 7e-75 | |
| Q9SI53 | 630 | Pentatricopeptide repeat- | no | no | 0.961 | 0.514 | 0.406 | 2e-72 | |
| O23169 | 691 | Pentatricopeptide repeat- | no | no | 0.976 | 0.476 | 0.388 | 3e-72 | |
| Q9FIB2 | 995 | Putative pentatricopeptid | no | no | 0.955 | 0.323 | 0.412 | 4e-72 | |
| Q9LW63 | 715 | Putative pentatricopeptid | no | no | 0.973 | 0.458 | 0.403 | 1e-71 | |
| Q9SMZ2 | 990 | Pentatricopeptide repeat- | no | no | 0.985 | 0.335 | 0.395 | 4e-71 | |
| Q9SVP7 | 1064 | Pentatricopeptide repeat- | no | no | 0.985 | 0.312 | 0.372 | 1e-70 | |
| Q9S7F4 | 825 | Putative pentatricopeptid | no | no | 0.985 | 0.402 | 0.388 | 7e-70 |
| >sp|Q9LR69|PPR8_ARATH Pentatricopeptide repeat-containing protein At1g03540 OS=Arabidopsis thaliana GN=PCMP-E4 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 432 bits (1110), Expect = e-120, Method: Compositional matrix adjust.
Identities = 203/330 (61%), Positives = 256/330 (77%), Gaps = 1/330 (0%)
Query: 1 RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
RLKQGKE+H K+IT G+ NVVVESSL+DMYGKCG V E+ +VF+ M KKNSVS SALL
Sbjct: 280 RLKQGKEIHGKLITNGIGSNVVVESSLLDMYGKCGSVREARQVFNGMSKKNSVSWSALLG 339
Query: 61 GYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
GYCQ G+ E I IFREMEE DL+ FG VL+ACAGLAA+RLGKE+H QY+RR +VI+
Sbjct: 340 GYCQNGEHEKAIEIFREMEEKDLYCFGTVLKACAGLAAVRLGKEIHGQYVRRGCFGNVIV 399
Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
ESAL+DLY K GC+D A +++ +M +RN+ITWN+M+S AQNGRGEEA+ F+DM + G
Sbjct: 400 ESALIDLYGKSGCIDSASRVYSKMSIRNMITWNAMLSALAQNGRGEEAVSFFNDMVKKGI 459
Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
KPD++SFI +L+AC H G++D GR +F M K Y IKP EHY+CM+DLLGRAGL EEAE
Sbjct: 460 KPDYISFIAILTACGHTGMVDEGRNYFVLMAKSYGIKPGTEHYSCMIDLLGRAGLFEEAE 519
Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNA-HVAERVAKKIMELKPDCHLSYVLLDNVYRAV 299
L+E A+CR+D+SLW VLLG C +A VAER+AK++MEL+P H+SYVLL N+Y+A+
Sbjct: 520 NLLERAECRNDASLWGVLLGPCAANADASRVAERIAKRMMELEPKYHMSYVLLSNMYKAI 579
Query: 300 GRWNDAFKIRTLMKYSGVKKMPGKSWIEAN 329
GR DA IR LM GV K G+SWI+A+
Sbjct: 580 GRHGDALNIRKLMVRRGVAKTVGQSWIDAH 609
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 285 bits (730), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 146/368 (39%), Positives = 219/368 (59%), Gaps = 42/368 (11%)
Query: 2 LKQGKEVHAKVI-TLGLCGNVVVESSLVDMYGKCGLVDESHRVFD--------------- 45
+K G+EVH +V+ L ++++ ++ VDMY KC + E+ +FD
Sbjct: 269 IKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMIS 328
Query: 46 ----------------KMLKKNSVSSSALLQGYCQTGDFESVIRIF----REMEEIDLFS 85
KM ++N VS +AL+ GY Q G+ E + +F RE +S
Sbjct: 329 GYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYS 388
Query: 86 FGIVLRACAGLAALRLGKEVHCQYIR-----RSGCKD-VIIESALVDLYAKCGCVDFAHQ 139
F +L+ACA LA L LG + H ++ +SG +D + + ++L+D+Y KCGCV+ +
Sbjct: 389 FANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYL 448
Query: 140 IFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGL 199
+F +M R+ ++WN+MI GFAQNG G EAL +F +M E G KPDH++ IGVLSAC H G
Sbjct: 449 VFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGF 508
Query: 200 IDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259
++ GR +F+SMT+++ + P +HY CMVDLLGRAG LEEA+++IE + DS +W LL
Sbjct: 509 VEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLL 568
Query: 260 GACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKK 319
AC RN + + VA+K++E++P YVLL N+Y +G+W D +R M+ GV K
Sbjct: 569 AACKVHRNITLGKYVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTK 628
Query: 320 MPGKSWIE 327
PG SWI+
Sbjct: 629 QPGCSWIK 636
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 281 bits (718), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 135/332 (40%), Positives = 213/332 (64%), Gaps = 10/332 (3%)
Query: 7 EVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTG 66
E+ ++ + C NV ++++ Y +CG + E+ +FDKM K++ VS +A++ GY Q+G
Sbjct: 329 EMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSG 388
Query: 67 DFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIR---RSGCKDVI 119
+R+F +ME ++ SF L CA + AL LGK++H + ++ +GC
Sbjct: 389 HSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGC---F 445
Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
+ +AL+ +Y KCG ++ A+ +F +M +++++WN+MI+G++++G GE ALR F+ M G
Sbjct: 446 VGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREG 505
Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
KPD + + VLSACSH GL+D+GR++F +MT++Y + P +HY CMVDLLGRAGLLE+A
Sbjct: 506 LKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDA 565
Query: 240 ETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAV 299
L++N D+++W LLGA N +AE A KI ++P+ YVLL N+Y +
Sbjct: 566 HNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASS 625
Query: 300 GRWNDAFKIRTLMKYSGVKKMPGKSWIEANSK 331
GRW D K+R M+ GVKK+PG SWIE +K
Sbjct: 626 GRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNK 657
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protein At2g03880, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 272 bits (696), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 134/330 (40%), Positives = 209/330 (63%), Gaps = 6/330 (1%)
Query: 8 VHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGD 67
+H +I GL +V V S+L+D++ K G +++ VFD+M+ +++ ++++ G+ Q
Sbjct: 181 LHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSR 240
Query: 68 FESVIRIFREMEEIDLF----SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESA 123
+ + +F+ M+ + VLRAC GLA L LG + H ++ +D+I+ +A
Sbjct: 241 SDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYD--QDLILNNA 298
Query: 124 LVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPD 183
LVD+Y KCG ++ A ++F QM R++ITW++MISG AQNG +EAL++F+ M GTKP+
Sbjct: 299 LVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPN 358
Query: 184 HVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLI 243
+++ +GVL ACSH GL++ G +F SM K Y I P EHY CM+DLLG+AG L++A L+
Sbjct: 359 YITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLL 418
Query: 244 ENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWN 303
+C D+ W LLGAC RN +AE AKK++ L P+ +Y LL N+Y +W+
Sbjct: 419 NEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQKWD 478
Query: 304 DAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
+IRT M+ G+KK PG SWIE N +++
Sbjct: 479 SVEEIRTRMRDRGIKKEPGCSWIEVNKQIH 508
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Arabidopsis thaliana (taxid: 3702) |
| >sp|O23169|PP353_ARATH Pentatricopeptide repeat-containing protein At4g37170 OS=Arabidopsis thaliana GN=PCMP-H5 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 272 bits (695), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 130/335 (38%), Positives = 213/335 (63%), Gaps = 6/335 (1%)
Query: 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
+++GKE+H ++ GL + V+ SSL+DMYGKCG +DE+ +FDK+++K+ VS ++++
Sbjct: 234 IRRGKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDR 293
Query: 62 YCQTGDFESVIRIFREM----EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
Y ++ + +F E+ E + ++F VL ACA L LGK+VH Y+ R G
Sbjct: 294 YFKSSRWREGFSLFSELVGSCERPNEYTFAGVLNACADLTTEELGKQVH-GYMTRVGFDP 352
Query: 118 V-IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
S+LVD+Y KCG ++ A + P +L++W S+I G AQNG+ +EAL+ FD +
Sbjct: 353 YSFASSSLVDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEALKYFDLLL 412
Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
+ GTKPDHV+F+ VLSAC+H GL+++G + F S+T+++R+ +HY C+VDLL R+G
Sbjct: 413 KSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHRLSHTSDHYTCLVDLLARSGRF 472
Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
E+ +++I + LW +LG C+T+ N +AE A+++ +++P+ ++YV + N+Y
Sbjct: 473 EQLKSVISEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEPENPVTYVTMANIY 532
Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSK 331
A G+W + K+R M+ GV K PG SW E K
Sbjct: 533 AAAGKWEEEGKMRKRMQEIGVTKRPGSSWTEIKRK 567
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIB2|PP373_ARATH Putative pentatricopeptide repeat-containing protein At5g09950 OS=Arabidopsis thaliana GN=PCMP-H35 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 271 bits (694), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 136/330 (41%), Positives = 209/330 (63%), Gaps = 8/330 (2%)
Query: 5 GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKML-KKNSVSSSALLQGYC 63
GK++H + + E++L+ YGKCG +D ++F +M ++++V+ ++++ GY
Sbjct: 536 GKQIHGLALKNNIADEATTENALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMISGYI 595
Query: 64 QT----GDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
+ V + + + +D F + VL A A +A L G EVH +R DV+
Sbjct: 596 HNELLAKALDLVWFMLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVRACLESDVV 655
Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT-EG 178
+ SALVD+Y+KCG +D+A + F MPVRN +WNSMISG+A++G+GEEAL++F+ M +G
Sbjct: 656 VGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFETMKLDG 715
Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
T PDHV+F+GVLSACSH GL++ G KHF SM+ Y + P+IEH++CM D+LGRAG L++
Sbjct: 716 QTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADVLGRAGELDK 775
Query: 239 AETLIENADCRHDSSLWEVLLGAC--TTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
E IE + + +W +LGAC R A + ++ A+ + +L+P+ ++YVLL N+Y
Sbjct: 776 LEDFIEKMPMKPNVLIWRTVLGACCRANGRKAELGKKAAEMLFQLEPENAVNYVLLGNMY 835
Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWI 326
A GRW D K R MK + VKK G SW+
Sbjct: 836 AAGGRWEDLVKARKKMKDADVKKEAGYSWV 865
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 270 bits (689), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 134/332 (40%), Positives = 207/332 (62%), Gaps = 4/332 (1%)
Query: 4 QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
+GKE+H VI G+ +V + SSLVDMY K +++S RVF ++ ++ +S ++L+ GY
Sbjct: 260 KGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYV 319
Query: 64 QTGDFESVIRIFREMEEIDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
Q G + +R+FR+M + +F V+ ACA LA L LGK++H +R ++
Sbjct: 320 QNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIF 379
Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
I SALVD+Y+KCG + A +IF +M V + ++W ++I G A +G G EA+ +F++M G
Sbjct: 380 IASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQG 439
Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239
KP+ V+F+ VL+ACSH+GL+D +F SMTK Y + ++EHY + DLLGRAG LEEA
Sbjct: 440 VKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEA 499
Query: 240 ETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAV 299
I S+W LL +C+ +N +AE+VA+KI + + +YVL+ N+Y +
Sbjct: 500 YNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVLMCNMYASN 559
Query: 300 GRWNDAFKIRTLMKYSGVKKMPGKSWIEANSK 331
GRW + K+R M+ G++K P SWIE +K
Sbjct: 560 GRWKEMAKLRLRMRKKGLRKKPACSWIEMKNK 591
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein At4g33170 OS=Arabidopsis thaliana GN=PCMP-H53 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 268 bits (685), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 133/336 (39%), Positives = 206/336 (61%), Gaps = 4/336 (1%)
Query: 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
+ QGK+VHA I G ++ V S ++DMY KCG + + FD + + V+ + ++ G
Sbjct: 533 INQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISG 592
Query: 62 YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
+ G+ E +F +M + D F+ + +A + L AL G+++H ++ + D
Sbjct: 593 CIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTND 652
Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
+ ++LVD+YAKCG +D A+ +F ++ + N+ WN+M+ G AQ+G G+E L++F M
Sbjct: 653 PFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKS 712
Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
G KPD V+FIGVLSACSH GL+ KH SM +Y IKP+IEHY+C+ D LGRAGL++
Sbjct: 713 LGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLVK 772
Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
+AE LIE+ +S++ LL AC + +RVA K++EL+P +YVLL N+Y
Sbjct: 773 QAENLIESMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYA 832
Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
A +W++ RT+MK VKK PG SWIE +K++
Sbjct: 833 AASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIH 868
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 267 bits (682), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 125/336 (37%), Positives = 210/336 (62%), Gaps = 4/336 (1%)
Query: 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
LK+G+++HA+ G ++ +++LV +Y +CG ++ES+ F++ ++++ +AL+ G
Sbjct: 607 LKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSG 666
Query: 62 YCQTGDFESVIRIFREM--EEIDL--FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
+ Q+G+ E +R+F M E ID F+FG ++A + A ++ GK+VH + +
Sbjct: 667 FQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSE 726
Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
+ +AL+ +YAKCG + A + FL++ +N ++WN++I+ ++++G G EAL FD M
Sbjct: 727 TEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIH 786
Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
+P+HV+ +GVLSACSH+GL+D+G +F SM EY + PK EHY C+VD+L RAGLL
Sbjct: 787 SNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLS 846
Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
A+ I+ + D+ +W LL AC +N + E A ++EL+P+ +YVLL N+Y
Sbjct: 847 RAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYA 906
Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
+W+ R MK GVKK PG+SWIE + ++
Sbjct: 907 VSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIH 942
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9S7F4|PP206_ARATH Putative pentatricopeptide repeat-containing protein At2g01510 OS=Arabidopsis thaliana GN=PCMP-H36 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 264 bits (675), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 131/337 (38%), Positives = 202/337 (59%), Gaps = 5/337 (1%)
Query: 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
L+ G+++H + + + V +SLVDMY KC + +E+ +F + ++ +VS +AL+ G
Sbjct: 367 LQMGRQLHCQALLATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISG 426
Query: 62 YCQTGDFESVIRIFREME----EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
Y Q G + +++F +M D +F VL+A A A+L LGK++H IR ++
Sbjct: 427 YVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLEN 486
Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
V S LVD+YAKCG + A Q+F +MP RN ++WN++IS A NG GE A+ F M E
Sbjct: 487 VFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAHADNGDGEAAIGAFAKMIE 546
Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237
G +PD VS +GVL+ACSH G +++G ++F +M+ Y I PK +HY CM+DLLGR G
Sbjct: 547 SGLQPDSVSILGVLTACSHCGFVEQGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGRFA 606
Query: 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMEL-KPDCHLSYVLLDNVY 296
EAE L++ D +W +L AC +N +AER A+K+ + K +YV + N+Y
Sbjct: 607 EAEKLMDEMPFEPDEIMWSSVLNACRIHKNQSLAERAAEKLFSMEKLRDAAAYVSMSNIY 666
Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
A G W ++ M+ G+KK+P SW+E N K++
Sbjct: 667 AAAGEWEKVRDVKKAMRERGIKKVPAYSWVEVNHKIH 703
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 337 | ||||||
| 147771902 | 708 | hypothetical protein VITISV_031420 [Viti | 0.958 | 0.456 | 0.732 | 1e-145 | |
| 225447243 | 633 | PREDICTED: pentatricopeptide repeat-cont | 0.958 | 0.510 | 0.732 | 1e-145 | |
| 224126745 | 606 | predicted protein [Populus trichocarpa] | 0.937 | 0.521 | 0.713 | 1e-137 | |
| 449438472 | 605 | PREDICTED: pentatricopeptide repeat-cont | 0.967 | 0.538 | 0.672 | 1e-130 | |
| 357450533 | 958 | Pentatricopeptide repeat-containing prot | 0.976 | 0.343 | 0.631 | 1e-119 | |
| 15218851 | 609 | pentatricopeptide repeat-containing prot | 0.976 | 0.540 | 0.615 | 1e-118 | |
| 297843162 | 608 | pentatricopeptide repeat-containing prot | 0.976 | 0.541 | 0.609 | 1e-117 | |
| 225216998 | 626 | EMB2261 putative [Oryza australiensis] | 0.988 | 0.531 | 0.607 | 1e-117 | |
| 225216882 | 615 | EMB2261 putative [Oryza nivara] gi|22521 | 0.988 | 0.541 | 0.598 | 1e-117 | |
| 225216963 | 622 | EMB2261 putative [Oryza officinalis] | 0.988 | 0.535 | 0.601 | 1e-117 |
| >gi|147771902|emb|CAN75707.1| hypothetical protein VITISV_031420 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 521 bits (1341), Expect = e-145, Method: Compositional matrix adjust.
Identities = 247/337 (73%), Positives = 282/337 (83%)
Query: 1 RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
RLKQGKEVHAKVIT G CGNVVVESSLVDMYGKCG V ES R+FD+M KNSVS SALL
Sbjct: 337 RLKQGKEVHAKVITTGFCGNVVVESSLVDMYGKCGSVGESQRIFDRMPIKNSVSWSALLG 396
Query: 61 GYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
GYCQ GDF+SVI+IFR+ME++DL+ FG +LR CAGLAA+R GKEVHCQYIR+ G +DVI+
Sbjct: 397 GYCQNGDFKSVIQIFRKMEKVDLYCFGTILRTCAGLAAVRQGKEVHCQYIRKGGWRDVIV 456
Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
ESALVDLYAKCGC+++A IF QMPVRNLITWNSMI GFAQNGRGEEALRIF+ M + G
Sbjct: 457 ESALVDLYAKCGCIEYAQTIFDQMPVRNLITWNSMIGGFAQNGRGEEALRIFNQMVKEGI 516
Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
KPD++SFIG+L ACSH GL+D GR++F SMTK+Y IK IEHY+CMVDLLGRAGLLEEAE
Sbjct: 517 KPDYISFIGILFACSHRGLVDEGREYFISMTKDYGIKVGIEHYSCMVDLLGRAGLLEEAE 576
Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300
LIE +D R DSSLW LLGACTT N +AER+AK++MEL+PD HLSYVLL NVY+AVG
Sbjct: 577 ILIETSDFRDDSSLWAALLGACTTCTNYEIAERIAKRVMELEPDYHLSYVLLANVYKAVG 636
Query: 301 RWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLNHDLD 337
RWNDA +IR LMK GV KMPGKSWIE + L D
Sbjct: 637 RWNDALRIRRLMKDRGVNKMPGKSWIETKNNLGSSFD 673
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225447243|ref|XP_002272819.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03540-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 520 bits (1340), Expect = e-145, Method: Compositional matrix adjust.
Identities = 247/337 (73%), Positives = 282/337 (83%)
Query: 1 RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
RLKQGKEVHAKVIT G CGNVVVESSLVDMYGKCG V ES R+FD+M KNSVS SALL
Sbjct: 278 RLKQGKEVHAKVITTGFCGNVVVESSLVDMYGKCGSVGESQRIFDRMPIKNSVSWSALLG 337
Query: 61 GYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
GYCQ GDF+SVI+IFR+ME++DL+ FG +LR CAGLAA+R GKEVHCQYIR+ G +DVI+
Sbjct: 338 GYCQNGDFKSVIQIFRKMEKVDLYCFGTILRTCAGLAAVRQGKEVHCQYIRKGGWRDVIV 397
Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
ESALVDLYAKCGC+++A IF QMPVRNLITWNSMI GFAQNGRGEEALRIF+ M + G
Sbjct: 398 ESALVDLYAKCGCIEYAQTIFDQMPVRNLITWNSMIGGFAQNGRGEEALRIFNQMVKEGI 457
Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
KPD++SFIG+L ACSH GL+D GR++F SMTK+Y IK IEHY+CMVDLLGRAGLLEEAE
Sbjct: 458 KPDYISFIGILFACSHRGLVDEGREYFISMTKDYGIKVGIEHYSCMVDLLGRAGLLEEAE 517
Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300
LIE +D R DSSLW LLGACTT N +AER+AK++MEL+PD HLSYVLL NVY+AVG
Sbjct: 518 ILIETSDFRDDSSLWAALLGACTTCTNYEIAERIAKRVMELEPDYHLSYVLLANVYKAVG 577
Query: 301 RWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLNHDLD 337
RWNDA +IR LMK GV KMPGKSWIE + L D
Sbjct: 578 RWNDALRIRRLMKDRGVNKMPGKSWIETKNNLGSSFD 614
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224126745|ref|XP_002319916.1| predicted protein [Populus trichocarpa] gi|222858292|gb|EEE95839.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 492 bits (1267), Expect = e-137, Method: Compositional matrix adjust.
Identities = 234/328 (71%), Positives = 273/328 (83%)
Query: 1 RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
RLKQGKEVHAKVIT GL GNV VESSLVDMYGKC LV++S VFD+M KN VS +ALL
Sbjct: 279 RLKQGKEVHAKVITSGLSGNVFVESSLVDMYGKCRLVNQSQCVFDRMSVKNLVSWTALLG 338
Query: 61 GYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
GYCQ GDFESVIRIFRE +++D +SFG VLRACAGLAA+R GKEVHCQY++R +DV+
Sbjct: 339 GYCQNGDFESVIRIFREGKKVDTYSFGTVLRACAGLAAVRQGKEVHCQYVKRCCWRDVVT 398
Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
ESALVDLYAKCGC+DFA++IF++M VRNLITWNSMI GFAQNGRG E ++FD+M E G
Sbjct: 399 ESALVDLYAKCGCIDFAYRIFVRMSVRNLITWNSMIYGFAQNGRGGEVFQLFDEMIEEGI 458
Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
+PD++SF+GVL ACSH GL+D+G+K+FA+MT+ Y IKP IEHYNCM+DLLGRAGLLEEAE
Sbjct: 459 RPDYISFVGVLFACSHAGLVDQGKKYFAAMTEVYEIKPGIEHYNCMIDLLGRAGLLEEAE 518
Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300
LIENA+CR + SLW VLLGAC ++ AER+AKK +ELKPD HLSYV L NVYRAVG
Sbjct: 519 NLIENANCRDEPSLWTVLLGACAASPHSATAERIAKKAVELKPDHHLSYVYLANVYRAVG 578
Query: 301 RWNDAFKIRTLMKYSGVKKMPGKSWIEA 328
RW+DA KIR LM GV KMPG SWIE
Sbjct: 579 RWDDAVKIRNLMTKRGVGKMPGTSWIET 606
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449438472|ref|XP_004137012.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03540-like [Cucumis sativus] gi|449493172|ref|XP_004159212.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03540-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 469 bits (1208), Expect = e-130, Method: Compositional matrix adjust.
Identities = 220/327 (67%), Positives = 269/327 (82%), Gaps = 1/327 (0%)
Query: 1 RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
RL+QG+E+HAKVI G GNVV ESSLVDMYGKCG V++S R+FD+M +NSVS SALL
Sbjct: 279 RLRQGEEIHAKVIAYGFSGNVVTESSLVDMYGKCGAVEKSQRLFDRMSNRNSVSWSALLA 338
Query: 61 GYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
YC GD+E + +FREM+E+DL+SFG V+RACAGLAA+ GKE+HCQYIR+ G +DVI+
Sbjct: 339 VYCHNGDYEKAVNLFREMKEVDLYSFGTVIRACAGLAAVTPGKEIHCQYIRKGGWRDVIV 398
Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
ESALVDLYAKCGC++FA+++F +MP RNLITWNSMI GFAQNG A++IF+ M + G
Sbjct: 399 ESALVDLYAKCGCINFAYRVFDRMPTRNLITWNSMIHGFAQNGSSGIAIQIFEAMIKEGI 458
Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
KPD +SFIG+L ACSH GL+D+ R +F MT +Y IKP +EHYNCMVDLLGRAGLLEEAE
Sbjct: 459 KPDCISFIGLLFACSHTGLVDQARHYFDLMTGKYGIKPGVEHYNCMVDLLGRAGLLEEAE 518
Query: 241 TLIENADCRHDSSLWEVLLGACTTF-RNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAV 299
LIENA+CR+DSSLW VLLGACTT N+ AER+AKK+MEL+P C+LSYV L NVYRAV
Sbjct: 519 NLIENAECRNDSSLWLVLLGACTTTCTNSATAERIAKKLMELEPQCYLSYVHLANVYRAV 578
Query: 300 GRWNDAFKIRTLMKYSGVKKMPGKSWI 326
GRW+DA K+R LMK +KKMPG+SW+
Sbjct: 579 GRWDDAVKVRELMKNRQLKKMPGQSWM 605
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357450533|ref|XP_003595543.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355484591|gb|AES65794.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 209/331 (63%), Positives = 263/331 (79%), Gaps = 2/331 (0%)
Query: 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKML-KKNSVSSSALLQ 60
L+QGKEVH KV+ LG GNVVVESSL+DMYGKCG V S VF+++ +KN+VS +A+L
Sbjct: 606 LRQGKEVHGKVVGLGFGGNVVVESSLLDMYGKCGCVRHSRIVFERLSDEKNNVSWTAMLG 665
Query: 61 GYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
YCQ ++++V+ + RE +++ ++FGIVLRAC+GLAA+ GKEVHC Y+R+ G KDVII
Sbjct: 666 VYCQNKEYQNVLDLVRERGDLNFYAFGIVLRACSGLAAVNHGKEVHCMYVRKGGSKDVII 725
Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
ESALVDLYAKCG VDFA +F M VRNLITWNSM+SGFAQNGRG EAL +F+DM + G
Sbjct: 726 ESALVDLYAKCGMVDFACTMFASMEVRNLITWNSMVSGFAQNGRGVEALALFEDMIKEGI 785
Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
KPD ++F+ VL ACSH GL+D GRK F M EY IKP +EHYNCM+DLLGRAG ++EAE
Sbjct: 786 KPDSITFVAVLFACSHAGLVDEGRKVFTLMG-EYGIKPVVEHYNCMIDLLGRAGFIDEAE 844
Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300
L+ENADCR+D SLW LLGACT + AERVA+K++EL+PD HLSYVLL+N+YR VG
Sbjct: 845 CLLENADCRYDKSLWAALLGACTKCSDYRTAERVARKMIELEPDFHLSYVLLNNIYREVG 904
Query: 301 RWNDAFKIRTLMKYSGVKKMPGKSWIEANSK 331
RW+DA +IR LM+ GVKKM GKSWI++ ++
Sbjct: 905 RWDDALEIRKLMEDRGVKKMAGKSWIDSQNR 935
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15218851|ref|NP_171853.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75180299|sp|Q9LR69.1|PPR8_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g03540 gi|9280645|gb|AAF86514.1|AC002560_7 F21B7.16 [Arabidopsis thaliana] gi|91805735|gb|ABE65596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|332189463|gb|AEE27584.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 203/330 (61%), Positives = 256/330 (77%), Gaps = 1/330 (0%)
Query: 1 RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
RLKQGKE+H K+IT G+ NVVVESSL+DMYGKCG V E+ +VF+ M KKNSVS SALL
Sbjct: 280 RLKQGKEIHGKLITNGIGSNVVVESSLLDMYGKCGSVREARQVFNGMSKKNSVSWSALLG 339
Query: 61 GYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
GYCQ G+ E I IFREMEE DL+ FG VL+ACAGLAA+RLGKE+H QY+RR +VI+
Sbjct: 340 GYCQNGEHEKAIEIFREMEEKDLYCFGTVLKACAGLAAVRLGKEIHGQYVRRGCFGNVIV 399
Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
ESAL+DLY K GC+D A +++ +M +RN+ITWN+M+S AQNGRGEEA+ F+DM + G
Sbjct: 400 ESALIDLYGKSGCIDSASRVYSKMSIRNMITWNAMLSALAQNGRGEEAVSFFNDMVKKGI 459
Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
KPD++SFI +L+AC H G++D GR +F M K Y IKP EHY+CM+DLLGRAGL EEAE
Sbjct: 460 KPDYISFIAILTACGHTGMVDEGRNYFVLMAKSYGIKPGTEHYSCMIDLLGRAGLFEEAE 519
Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNA-HVAERVAKKIMELKPDCHLSYVLLDNVYRAV 299
L+E A+CR+D+SLW VLLG C +A VAER+AK++MEL+P H+SYVLL N+Y+A+
Sbjct: 520 NLLERAECRNDASLWGVLLGPCAANADASRVAERIAKRMMELEPKYHMSYVLLSNMYKAI 579
Query: 300 GRWNDAFKIRTLMKYSGVKKMPGKSWIEAN 329
GR DA IR LM GV K G+SWI+A+
Sbjct: 580 GRHGDALNIRKLMVRRGVAKTVGQSWIDAH 609
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297843162|ref|XP_002889462.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297335304|gb|EFH65721.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust.
Identities = 201/330 (60%), Positives = 257/330 (77%), Gaps = 1/330 (0%)
Query: 1 RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
RLKQGKE+H K+IT G+ NVVVESSL+DMYGK G V E+ +VF+ M +KN VS SALL
Sbjct: 279 RLKQGKEIHGKLITNGIGSNVVVESSLLDMYGKSGSVREARQVFNGMPRKNIVSWSALLG 338
Query: 61 GYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
GYCQ G+ E I +FREMEE DL+ FG VL+ACAGLAA+RLGKE+H QY+RR +VI+
Sbjct: 339 GYCQNGEHEKAIEMFREMEEKDLYCFGTVLKACAGLAAVRLGKEIHGQYVRRGCFGNVIV 398
Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
ESAL+DLY K GC+D+A +++ +M VRN+ITWN+M+S AQNGRGEEA+ F+DM + G
Sbjct: 399 ESALIDLYGKSGCIDYASRVYSKMSVRNMITWNAMLSALAQNGRGEEAVSFFNDMVKKGI 458
Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
KPD++SFI VL+AC H GL++ GR +FA M K Y IKP EHY+CM+DLLGRAGL EEAE
Sbjct: 459 KPDYISFIAVLTACGHTGLVEEGRNYFALMAKSYGIKPGTEHYSCMIDLLGRAGLFEEAE 518
Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNA-HVAERVAKKIMELKPDCHLSYVLLDNVYRAV 299
L++ A+CR+D+SLW VLLG C +A +AER+AK++MEL+P H+SYVLL N+Y+A+
Sbjct: 519 NLLDRAECRNDASLWGVLLGPCAANTDASSIAERIAKRMMELEPKYHMSYVLLSNMYKAI 578
Query: 300 GRWNDAFKIRTLMKYSGVKKMPGKSWIEAN 329
GR DA KIR LM GV K G+SWI+A+
Sbjct: 579 GRHGDALKIRKLMVRRGVAKTVGQSWIDAH 608
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225216998|gb|ACN85287.1| EMB2261 putative [Oryza australiensis] | Back alignment and taxonomy information |
|---|
Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust.
Identities = 204/336 (60%), Positives = 257/336 (76%), Gaps = 3/336 (0%)
Query: 1 RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
R QG++ HA+V+T GLCGNV+VESS +DMY KCGL+ E+ +VFD+M +N VS ALL
Sbjct: 260 RGSQGRQAHAQVVTRGLCGNVIVESSTLDMYAKCGLMVEARKVFDRMEVRNEVSRCALLG 319
Query: 61 GYCQTGDFESVIRIFREM--EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
GYCQ G++E VI +FREM E+ D +S G VLRACAGL++++ GKE+HC+++R G +DV
Sbjct: 320 GYCQNGEYEKVIALFREMDKEDGDWYSLGTVLRACAGLSSVKPGKEIHCRFLRMGGWRDV 379
Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
++ESALVDLYAKCG VD+A +F VRN ITWN+MISGFAQNG GE A+ +F+ M
Sbjct: 380 VVESALVDLYAKCGAVDYACSVFEASTVRNTITWNAMISGFAQNGHGERAINLFNRMVRE 439
Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
G +PD++SFIGVL ACSH G++++GR +F SM K+Y I P IEHYNCMVDLL R LLEE
Sbjct: 440 GPRPDYISFIGVLFACSHTGMVEQGRNYFDSMCKDYGIAPGIEHYNCMVDLLSRVELLEE 499
Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRA 298
AE LI + R+DSSLW +LGA T N VAERVAKK+MEL+P HLSY+LL+NVYR
Sbjct: 500 AEDLINESPFRNDSSLWAAILGASATHSNPDVAERVAKKMMELEPQYHLSYILLENVYRT 559
Query: 299 VGRWNDAFKIRTLMKYSGVKKMPGKSWIEAN-SKLN 333
VGRW DA +IR LM+ VKK PG SWI+AN SKL+
Sbjct: 560 VGRWEDALEIRRLMESRKVKKEPGMSWIDANRSKLH 595
|
Source: Oryza australiensis Species: Oryza australiensis Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225216882|gb|ACN85180.1| EMB2261 putative [Oryza nivara] gi|225216899|gb|ACN85196.1| EMB2261 putative [Oryza rufipogon] | Back alignment and taxonomy information |
|---|
Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust.
Identities = 201/336 (59%), Positives = 258/336 (76%), Gaps = 3/336 (0%)
Query: 1 RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
R QG++ HA+V+T GLCGNV+VESS +DMY KCGL+ E+H+VFD+M +N VS ALL
Sbjct: 260 RGSQGRQAHAQVVTRGLCGNVIVESSTLDMYAKCGLMVEAHKVFDRMQVRNEVSRCALLG 319
Query: 61 GYCQTGDFESVIRIFREM--EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
GYCQ G++E VI +FREM E+ D +S G VLRACAGL++++ GKE+HC+++R +G +DV
Sbjct: 320 GYCQNGEYEKVIALFREMDKEDGDWYSLGTVLRACAGLSSVKPGKEIHCRFLRMAGWRDV 379
Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
++ESALVDLYAKCG VD+A+ +F VRN ITWN+MI GFAQNG GE A+ +F+ M
Sbjct: 380 VVESALVDLYAKCGAVDYAYSVFEASTVRNTITWNAMIGGFAQNGHGERAINLFNRMVRE 439
Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
G +PD++SFIGVL ACSH G++++GR +F SM K+Y I P IEHYNCMVDL R LLEE
Sbjct: 440 GPRPDYISFIGVLFACSHTGMVEQGRNYFNSMCKDYGIAPGIEHYNCMVDLFSRVELLEE 499
Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRA 298
AE LI + R+DSSLW +LGA T N VAERV+KK+MEL+P HLSY+LL+NVYR
Sbjct: 500 AEDLINKSPFRNDSSLWADILGASATHSNPDVAERVSKKMMELEPQYHLSYILLENVYRT 559
Query: 299 VGRWNDAFKIRTLMKYSGVKKMPGKSWIEAN-SKLN 333
VGRW DA +IR LM+ VKK PG SW++AN SKL+
Sbjct: 560 VGRWEDALEIRRLMESRKVKKEPGMSWVDANRSKLH 595
|
Source: Oryza nivara Species: Oryza nivara Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225216963|gb|ACN85255.1| EMB2261 putative [Oryza officinalis] | Back alignment and taxonomy information |
|---|
Score = 426 bits (1095), Expect = e-117, Method: Compositional matrix adjust.
Identities = 202/336 (60%), Positives = 256/336 (76%), Gaps = 3/336 (0%)
Query: 1 RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
R QG++ HA+V+T GLCGNV+VESS +DMY KCGL+ E+ +VFD+M +N VS ALL
Sbjct: 256 RGSQGRQAHAQVVTRGLCGNVIVESSTLDMYAKCGLMVEARKVFDRMQVRNEVSRCALLG 315
Query: 61 GYCQTGDFESVIRIFREM--EEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118
GYCQ G++E VI +FREM E+ D +S G VLRACAGL++++ GKE+HC+++R G +DV
Sbjct: 316 GYCQNGEYEKVIALFREMDKEDGDWYSLGTVLRACAGLSSVKPGKEIHCRFLRMGGWRDV 375
Query: 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178
++ESALVDLYAKCG VD+A+ +F VRN ITWN+MI GFAQNG GE A+ +F+ M
Sbjct: 376 VVESALVDLYAKCGAVDYAYSVFEASTVRNTITWNAMIGGFAQNGHGERAINLFNRMVRE 435
Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
G +PD++SFIGVL ACSH G++++GR +F SM K+Y I P IEHYNCMVDLL R LLEE
Sbjct: 436 GPRPDYISFIGVLFACSHTGMVEQGRNYFNSMCKDYGIAPGIEHYNCMVDLLSRVELLEE 495
Query: 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRA 298
AE LI + R+DSSLW +LGA T N VAERVAKK+MEL+P HLSY+LL+NVYR
Sbjct: 496 AEDLINKSPFRNDSSLWAAILGASATHSNPDVAERVAKKMMELEPQYHLSYILLENVYRT 555
Query: 299 VGRWNDAFKIRTLMKYSGVKKMPGKSWIEAN-SKLN 333
VGRW DA +IR LM+ VKK PG SWI+ N SKL+
Sbjct: 556 VGRWEDALEIRRLMESRKVKKEPGMSWIDTNRSKLH 591
|
Source: Oryza officinalis Species: Oryza officinalis Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 337 | ||||||
| TAIR|locus:2020703 | 609 | AT1G03540 [Arabidopsis thalian | 0.973 | 0.538 | 0.549 | 7.6e-96 | |
| TAIR|locus:2115130 | 691 | AT4G37170 "AT4G37170" [Arabido | 0.976 | 0.476 | 0.352 | 3.7e-62 | |
| TAIR|locus:2178188 | 995 | MEF7 "AT5G09950" [Arabidopsis | 0.955 | 0.323 | 0.372 | 3.2e-60 | |
| TAIR|locus:2119440 | 1064 | AT4G13650 [Arabidopsis thalian | 0.985 | 0.312 | 0.342 | 1.5e-58 | |
| TAIR|locus:2140235 | 781 | AT4G02750 [Arabidopsis thalian | 0.922 | 0.398 | 0.361 | 2.5e-58 | |
| TAIR|locus:2054131 | 697 | SLO2 "AT2G13600" [Arabidopsis | 0.913 | 0.441 | 0.367 | 8.4e-58 | |
| TAIR|locus:2125899 | 990 | AT4G33170 [Arabidopsis thalian | 0.985 | 0.335 | 0.354 | 2.8e-57 | |
| TAIR|locus:2056794 | 630 | REME1 "required for efficiency | 0.961 | 0.514 | 0.351 | 9.6e-57 | |
| TAIR|locus:2078653 | 825 | AT3G02010 [Arabidopsis thalian | 0.979 | 0.4 | 0.348 | 1.7e-56 | |
| TAIR|locus:2205425 | 743 | AT1G68930 "AT1G68930" [Arabido | 0.985 | 0.446 | 0.345 | 4.2e-56 |
| TAIR|locus:2020703 AT1G03540 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 953 (340.5 bits), Expect = 7.6e-96, P = 7.6e-96
Identities = 182/331 (54%), Positives = 233/331 (70%)
Query: 1 RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
RLKQGKE+H K+IT G+ NVVVESSL+DMYGKCG V E+ +VF+ M KKNSVS SALL
Sbjct: 280 RLKQGKEIHGKLITNGIGSNVVVESSLLDMYGKCGSVREARQVFNGMSKKNSVSWSALLG 339
Query: 61 GYCQTGDFESVIRIFREMEEIDLFSFGIVXXXXXXXXXXXXXKEVHCQYIRRSGC-KDVI 119
GYCQ G+ E I IFREMEE DL+ FG V KE+H QY+RR GC +VI
Sbjct: 340 GYCQNGEHEKAIEIFREMEEKDLYCFGTVLKACAGLAAVRLGKEIHGQYVRR-GCFGNVI 398
Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
+ESAL+DLY K GC+D A +++ +M +RN+ITWN+M+S AQNGRGEEA+ F+DM + G
Sbjct: 399 VESALIDLYGKSGCIDSASRVYSKMSIRNMITWNAMLSALAQNGRGEEAVSFFNDMVKKG 458
Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDXXXXXXXXXXX 239
KPD++SFI +L+AC H G++D GR +F M K Y IKP EHY+CM+D
Sbjct: 459 IKPDYISFIAILTACGHTGMVDEGRNYFVLMAKSYGIKPGTEHYSCMIDLLGRAGLFEEA 518
Query: 240 XXXIENADCRHDSSLWEVLLGACTTFRNA-HVAERVAKKIMELKPDCHLSYVLLDNVYRA 298
+E A+CR+D+SLW VLLG C +A VAER+AK++MEL+P H+SYVLL N+Y+A
Sbjct: 519 ENLLERAECRNDASLWGVLLGPCAANADASRVAERIAKRMMELEPKYHMSYVLLSNMYKA 578
Query: 299 VGRWNDAFKIRTLMKYSGVKKMPGKSWIEAN 329
+GR DA IR LM GV K G+SWI+A+
Sbjct: 579 IGRHGDALNIRKLMVRRGVAKTVGQSWIDAH 609
|
|
| TAIR|locus:2115130 AT4G37170 "AT4G37170" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 615 (221.5 bits), Expect = 3.7e-62, Sum P(2) = 3.7e-62
Identities = 118/335 (35%), Positives = 196/335 (58%)
Query: 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
+++GKE+H ++ GL + V+ SSL+DMYGKCG +DE+ +FDK+++K+ VS ++++
Sbjct: 234 IRRGKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDR 293
Query: 62 YCQTGDFESVIRIFREM----EEIDLFSFGIVXXXXXXXXXXXXXKEVHCQYIRRSGCKD 117
Y ++ + +F E+ E + ++F V K+VH Y+ R G
Sbjct: 294 YFKSSRWREGFSLFSELVGSCERPNEYTFAGVLNACADLTTEELGKQVH-GYMTRVGFDP 352
Query: 118 V-IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
S+LVD+Y KCG ++ A + P +L++W S+I G AQNG+ +EAL+ FD +
Sbjct: 353 YSFASSSLVDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEALKYFDLLL 412
Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDXXXXXXXX 236
+ GTKPDHV+F+ VLSAC+H GL+++G + F S+T+++R+ +HY C+VD
Sbjct: 413 KSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHRLSHTSDHYTCLVDLLARSGRF 472
Query: 237 XXXXXXIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
I + LW +LG C+T+ N +AE A+++ +++P+ ++YV + N+Y
Sbjct: 473 EQLKSVISEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEPENPVTYVTMANIY 532
Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSK 331
A G+W + K+R M+ GV K PG SW E K
Sbjct: 533 AAAGKWEEEGKMRKRMQEIGVTKRPGSSWTEIKRK 567
|
|
| TAIR|locus:2178188 MEF7 "AT5G09950" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 623 (224.4 bits), Expect = 3.2e-60, P = 3.2e-60
Identities = 123/330 (37%), Positives = 191/330 (57%)
Query: 5 GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKML-KKNSVSSSALLQGYC 63
GK++H + + E++L+ YGKCG +D ++F +M ++++V+ ++++ GY
Sbjct: 536 GKQIHGLALKNNIADEATTENALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMISGYI 595
Query: 64 QTGDFESVIRIFREM----EEIDLFSFGIVXXXXXXXXXXXXXKEVHCQYIRRSGCKDVI 119
+ + M + +D F + V EVH +R DV+
Sbjct: 596 HNELLAKALDLVWFMLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVRACLESDVV 655
Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT-EG 178
+ SALVD+Y+KCG +D+A + F MPVRN +WNSMISG+A++G+GEEAL++F+ M +G
Sbjct: 656 VGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFETMKLDG 715
Query: 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDXXXXXXXXXX 238
T PDHV+F+GVLSACSH GL++ G KHF SM+ Y + P+IEH++CM D
Sbjct: 716 QTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADVLGRAGELDK 775
Query: 239 XXXXIENADCRHDSSLWEVLLGAC--TTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
IE + + +W +LGAC R A + ++ A+ + +L+P+ ++YVLL N+Y
Sbjct: 776 LEDFIEKMPMKPNVLIWRTVLGACCRANGRKAELGKKAAEMLFQLEPENAVNYVLLGNMY 835
Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWI 326
A GRW D K R MK + VKK G SW+
Sbjct: 836 AAGGRWEDLVKARKKMKDADVKKEAGYSWV 865
|
|
| TAIR|locus:2119440 AT4G13650 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 609 (219.4 bits), Expect = 1.5e-58, P = 1.5e-58
Identities = 115/336 (34%), Positives = 193/336 (57%)
Query: 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
LK+G+++HA+ G ++ +++LV +Y +CG ++ES+ F++ ++++ +AL+ G
Sbjct: 607 LKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSG 666
Query: 62 YCQTGDFESVIRIFREM--EEIDL--FSFGIVXXXXXXXXXXXXXKEVHCQYIRRSGCKD 117
+ Q+G+ E +R+F M E ID F+FG K+VH + +
Sbjct: 667 FQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSE 726
Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
+ +AL+ +YAKCG + A + FL++ +N ++WN++I+ ++++G G EAL FD M
Sbjct: 727 TEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIH 786
Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDXXXXXXXXX 237
+P+HV+ +GVLSACSH+GL+D+G +F SM EY + PK EHY C+VD
Sbjct: 787 SNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLS 846
Query: 238 XXXXXIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
I+ + D+ +W LL AC +N + E A ++EL+P+ +YVLL N+Y
Sbjct: 847 RAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYA 906
Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
+W+ R MK GVKK PG+SWIE + ++
Sbjct: 907 VSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIH 942
|
|
| TAIR|locus:2140235 AT4G02750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 599 (215.9 bits), Expect = 2.5e-58, P = 2.5e-58
Identities = 116/321 (36%), Positives = 188/321 (58%)
Query: 18 CGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFRE 77
C NV ++++ Y +CG + E+ +FDKM K++ VS +A++ GY Q+G +R+F +
Sbjct: 340 CRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQ 399
Query: 78 MEE----IDLFSFGIVXXXXXXXXXXXXXKEVHCQYIR---RSGCKDVIIESALVDLYAK 130
ME ++ SF K++H + ++ +GC + +AL+ +Y K
Sbjct: 400 MEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGC---FVGNALLLMYCK 456
Query: 131 CGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGV 190
CG ++ A+ +F +M +++++WN+MI+G++++G GE ALR F+ M G KPD + + V
Sbjct: 457 CGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAV 516
Query: 191 LSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDXXXXXXXXXXXXXXIENADCRH 250
LSACSH GL+D+GR++F +MT++Y + P +HY CMVD ++N
Sbjct: 517 LSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEP 576
Query: 251 DSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRT 310
D+++W LLGA N +AE A KI ++P+ YVLL N+Y + GRW D K+R
Sbjct: 577 DAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRV 636
Query: 311 LMKYSGVKKMPGKSWIEANSK 331
M+ GVKK+PG SWIE +K
Sbjct: 637 RMRDKGVKKVPGYSWIEIQNK 657
|
|
| TAIR|locus:2054131 SLO2 "AT2G13600" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 594 (214.2 bits), Expect = 8.4e-58, P = 8.4e-58
Identities = 117/318 (36%), Positives = 179/318 (56%)
Query: 20 NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIF---- 75
NV+ E+S++ Y + +F KM ++N VS +AL+ GY Q G+ E + +F
Sbjct: 319 NVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLK 378
Query: 76 REMEEIDLFSFGIVXXXXXXXXXXXXXKEVHCQYIR-----RSGCKD-VIIESALVDLYA 129
RE +SF + + H ++ +SG +D + + ++L+D+Y
Sbjct: 379 RESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYV 438
Query: 130 KCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIG 189
KCGCV+ + +F +M R+ ++WN+MI GFAQNG G EAL +F +M E G KPDH++ IG
Sbjct: 439 KCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIG 498
Query: 190 VLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDXXXXXXXXXXXXXXIENADCR 249
VLSAC H G ++ GR +F+SMT+++ + P +HY CMVD IE +
Sbjct: 499 VLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQ 558
Query: 250 HDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIR 309
DS +W LL AC RN + + VA+K++E++P YVLL N+Y +G+W D +R
Sbjct: 559 PDSVIWGSLLAACKVHRNITLGKYVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDVMNVR 618
Query: 310 TLMKYSGVKKMPGKSWIE 327
M+ GV K PG SWI+
Sbjct: 619 KSMRKEGVTKQPGCSWIK 636
|
|
| TAIR|locus:2125899 AT4G33170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 596 (214.9 bits), Expect = 2.8e-57, P = 2.8e-57
Identities = 119/336 (35%), Positives = 187/336 (55%)
Query: 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
+ QGK+VHA I G ++ V S ++DMY KCG + + FD + + V+ + ++ G
Sbjct: 533 INQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISG 592
Query: 62 YCQTGDFESVIRIFREMEEI----DLFSFGIVXXXXXXXXXXXXXKEVHCQYIRRSGCKD 117
+ G+ E +F +M + D F+ + +++H ++ + D
Sbjct: 593 CIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTND 652
Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
+ ++LVD+YAKCG +D A+ +F ++ + N+ WN+M+ G AQ+G G+E L++F M
Sbjct: 653 PFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKS 712
Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDXXXXXXXXX 237
G KPD V+FIGVLSACSH GL+ KH SM +Y IKP+IEHY+C+ D
Sbjct: 713 LGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLVK 772
Query: 238 XXXXXIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
IE+ +S++ LL AC + +RVA K++EL+P +YVLL N+Y
Sbjct: 773 QAENLIESMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYA 832
Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
A +W++ RT+MK VKK PG SWIE +K++
Sbjct: 833 AASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIH 868
|
|
| TAIR|locus:2056794 REME1 "required for efficiency of mitochondrial editing 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 584 (210.6 bits), Expect = 9.6e-57, P = 9.6e-57
Identities = 116/330 (35%), Positives = 188/330 (56%)
Query: 8 VHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGD 67
+H +I GL +V V S+L+D++ K G +++ VFD+M+ +++ ++++ G+ Q
Sbjct: 181 LHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSR 240
Query: 68 FESVIRIFREMEEIDLFS----FGIVXXXXXXXXXXXXXKEVHCQYIRRSGCKDVIIESA 123
+ + +F+ M+ + V + H ++ +D+I+ +A
Sbjct: 241 SDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYD--QDLILNNA 298
Query: 124 LVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPD 183
LVD+Y KCG ++ A ++F QM R++ITW++MISG AQNG +EAL++F+ M GTKP+
Sbjct: 299 LVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPN 358
Query: 184 HVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDXXXXXXXXXXXXXXI 243
+++ +GVL ACSH GL++ G +F SM K Y I P EHY CM+D +
Sbjct: 359 YITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLL 418
Query: 244 ENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWN 303
+C D+ W LLGAC RN +AE AKK++ L P+ +Y LL N+Y +W+
Sbjct: 419 NEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQKWD 478
Query: 304 DAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
+IRT M+ G+KK PG SWIE N +++
Sbjct: 479 SVEEIRTRMRDRGIKKEPGCSWIEVNKQIH 508
|
|
| TAIR|locus:2078653 AT3G02010 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 582 (209.9 bits), Expect = 1.7e-56, P = 1.7e-56
Identities = 118/339 (34%), Positives = 188/339 (55%)
Query: 2 LKQGKEVHAKVITLGLCGNVV-VESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
L+ G+++H + + L +++ V +SLVDMY KC + +E+ +F + ++ +VS +AL+
Sbjct: 367 LQMGRQLHCQAL-LATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALIS 425
Query: 61 GYCQTGDFESVIRIFREME----EIDLFSFGIVXXXXXXXXXXXXXKEVHCQYIRRSGCK 116
GY Q G + +++F +M D +F V K++H IR +
Sbjct: 426 GYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLE 485
Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
+V S LVD+YAKCG + A Q+F +MP RN ++WN++IS A NG GE A+ F M
Sbjct: 486 NVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAHADNGDGEAAIGAFAKMI 545
Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDXXXXXXXX 236
E G +PD VS +GVL+ACSH G +++G ++F +M+ Y I PK +HY CM+D
Sbjct: 546 ESGLQPDSVSILGVLTACSHCGFVEQGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGRF 605
Query: 237 XXXXXXIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKI--MELKPDCHLSYVLLDN 294
++ D +W +L AC +N +AER A+K+ ME D +YV + N
Sbjct: 606 AEAEKLMDEMPFEPDEIMWSSVLNACRIHKNQSLAERAAEKLFSMEKLRDA-AAYVSMSN 664
Query: 295 VYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
+Y A G W ++ M+ G+KK+P SW+E N K++
Sbjct: 665 IYAAAGEWEKVRDVKKAMRERGIKKVPAYSWVEVNHKIH 703
|
|
| TAIR|locus:2205425 AT1G68930 "AT1G68930" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 578 (208.5 bits), Expect = 4.2e-56, P = 4.2e-56
Identities = 116/336 (34%), Positives = 186/336 (55%)
Query: 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
+ +GK++HA +I ++ V S+L+DMY KC + + VFD+M +KN VS +A++ G
Sbjct: 286 INEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVG 345
Query: 62 YCQTGDFESVIRIFREME----EIDLFSFGIVXXXXXXXXXXXXXKEVHCQYIRRSGCKD 117
Y QTG E ++IF +M+ + D ++ G + H + I
Sbjct: 346 YGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHY 405
Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
V + ++LV LY KCG +D + ++F +M VR+ ++W +M+S +AQ GR E +++FD M +
Sbjct: 406 VTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQ 465
Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDXXXXXXXXX 237
G KPD V+ GV+SACS GL+++G+++F MT EY I P I HY+CM+D
Sbjct: 466 HGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLE 525
Query: 238 XXXXXIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297
I D+ W LL AC N + + A+ ++EL P Y LL ++Y
Sbjct: 526 EAMRFINGMPFPPDAIGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYA 585
Query: 298 AVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
+ G+W+ ++R M+ VKK PG+SWI+ KL+
Sbjct: 586 SKGKWDSVAQLRRGMREKNVKKEPGQSWIKWKGKLH 621
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00026008001 | SubName- Full=Chromosome chr12 scaffold_36, whole genome shotgun sequence; (629 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 337 | |||
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-89 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-72 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-38 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-37 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 6e-36 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-12 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-11 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 9e-10 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 7e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 8e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 5e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-05 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 7e-05 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 0.001 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.001 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.003 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.004 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 282 bits (723), Expect = 1e-89
Identities = 124/327 (37%), Positives = 203/327 (62%), Gaps = 4/327 (1%)
Query: 5 GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQ 64
G+++H V+ G+ G+ V +L+DMY KCG ++++ VFD M +K +V+ +++L GY
Sbjct: 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYAL 302
Query: 65 TGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120
G E + ++ EM + ID F+F I++R + LA L K+ H IR D++
Sbjct: 303 HGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVA 362
Query: 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180
+ALVDLY+K G ++ A +F +MP +NLI+WN++I+G+ +GRG +A+ +F+ M G
Sbjct: 363 NTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGV 422
Query: 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240
P+HV+F+ VLSAC + GL ++G + F SM++ +RIKP+ HY CM++LLGR GLL+EA
Sbjct: 423 APNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAY 482
Query: 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300
+I A + ++W LL AC +N + A+K+ + P+ +YV+L N+Y + G
Sbjct: 483 AMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSG 542
Query: 301 RWNDAFKIRTLMKYSGVKKMPGKSWIE 327
R +A K+ +K G+ P +WIE
Sbjct: 543 RQAEAAKVVETLKRKGLSMHPACTWIE 569
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 240 bits (614), Expect = 1e-72
Identities = 117/337 (34%), Positives = 195/337 (57%), Gaps = 6/337 (1%)
Query: 1 RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQ 60
L G ++H GL VVV ++L++MY KC +D++ VF + +K+ +S ++++
Sbjct: 404 DLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIA 463
Query: 61 GYC-QTGDFESVIRIFREME---EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK 116
G FE++I FR+M + + + L ACA + AL GKE+H +R
Sbjct: 464 GLRLNNRCFEALI-FFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGF 522
Query: 117 DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176
D + +AL+DLY +CG +++A F +++++WN +++G+ +G+G A+ +F+ M
Sbjct: 523 DGFLPNALLDLYVRCGRMNYAWNQF-NSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMV 581
Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236
E G PD V+FI +L ACS G++ +G ++F SM ++Y I P ++HY C+VDLLGRAG L
Sbjct: 582 ESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKL 641
Query: 237 EEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296
EA I D ++W LL AC R+ + E A+ I EL P+ Y+LL N+Y
Sbjct: 642 TEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLY 701
Query: 297 RAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKLN 333
G+W++ ++R M+ +G+ PG SW+E K++
Sbjct: 702 ADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVH 738
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 144 bits (364), Expect = 3e-38
Identities = 80/291 (27%), Positives = 149/291 (51%), Gaps = 13/291 (4%)
Query: 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
L +G+EVHA V+ G +V V ++L+ MY KCG V + VFD+M +++ +S +A++ G
Sbjct: 203 LARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISG 262
Query: 62 YCQTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117
Y + G+ + +F M E+ DL + V+ AC L RLG+E+H ++ D
Sbjct: 263 YFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVD 322
Query: 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177
V + ++L+ +Y G A ++F +M ++ ++W +MISG+ +NG ++AL + M +
Sbjct: 323 VSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQ 382
Query: 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY----NCMVDLLGRA 233
PD ++ VLSAC+ +G +D G K E + + Y N ++++ +
Sbjct: 383 DNVSPDEITIASVLSACACLGDLDVGVK-----LHELAERKGLISYVVVANALIEMYSKC 437
Query: 234 GLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPD 284
+++A + N + S ++ G R + ++ LKP+
Sbjct: 438 KCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPN 488
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 141 bits (357), Expect = 2e-37
Identities = 68/235 (28%), Positives = 128/235 (54%), Gaps = 6/235 (2%)
Query: 30 MYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREM-EEID---LFS 85
M+ KCG++ ++ R+FD+M ++N S ++ G G++ +FREM E+ +
Sbjct: 167 MHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRT 226
Query: 86 FGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP 145
F ++LRA AGL + R G+++HC ++ D + AL+D+Y+KCG ++ A +F MP
Sbjct: 227 FVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP 286
Query: 146 VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
+ + WNSM++G+A +G EEAL ++ +M + G D +F ++ S + L++ ++
Sbjct: 287 EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQ 346
Query: 206 HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLG 260
A + + I +VDL + G +E+A + + ++ S W L+
Sbjct: 347 AHAGLIRT-GFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLIS-WNALIA 399
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 137 bits (347), Expect = 6e-36
Identities = 74/264 (28%), Positives = 134/264 (50%), Gaps = 8/264 (3%)
Query: 4 QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYC 63
+G V ++ ++ V + ++++ M+ + G + + VF KM +++ S + L+ GY
Sbjct: 104 EGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYA 163
Query: 64 QTGDFESVIRIFREMEEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119
+ G F+ + ++ M D+++F VLR C G+ L G+EVH +R DV
Sbjct: 164 KAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVD 223
Query: 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
+ +AL+ +Y KCG V A +F +MP R+ I+WN+MISG+ +NG E L +F M E
Sbjct: 224 VVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELS 283
Query: 180 TKPDHVSFIGVLSACSHMGLIDRGRK-HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238
PD ++ V+SAC +G GR+ H + + + + N ++ + G E
Sbjct: 284 VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAV--DVSVCNSLIQMYLSLGSWGE 341
Query: 239 AETLIENADCRHDSSLWEVLLGAC 262
AE + + + D+ W ++
Sbjct: 342 AEKVFSRMETK-DAVSWTAMISGY 364
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 67.6 bits (165), Expect = 2e-12
Identities = 64/264 (24%), Positives = 106/264 (40%), Gaps = 47/264 (17%)
Query: 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQG 61
L+ K+ HA +I G ++V ++LVD+Y K G ++++ VFD+M +KN +S +AL+ G
Sbjct: 341 LEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAG 400
Query: 62 YCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121
Y G + +F M + G+ LA L S C
Sbjct: 401 YGNHGRGTKAVEMFERM-----IAEGVAPNHVTFLAVL-------------SAC------ 436
Query: 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLIT-----WNSMISGFAQNGRGEEALRIFDDMT 176
G + +IF M + I + MI + G +EA +
Sbjct: 437 -------RYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRR-- 487
Query: 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKP-KIEHYNCMVDLLGRAGL 235
KP + +L+AC ++ GR + K Y + P K+ +Y +++L +G
Sbjct: 488 -APFKPTVNMWAALLTACRIHKNLELGR---LAAEKLYGMGPEKLNNYVVLLNLYNSSGR 543
Query: 236 LEEA----ETLIENADCRHDSSLW 255
EA ETL H + W
Sbjct: 544 QAEAAKVVETLKRKGLSMHPACTW 567
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 4e-12
Identities = 41/155 (26%), Positives = 79/155 (50%), Gaps = 4/155 (2%)
Query: 55 SSALLQGYCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYI 110
S++ L+ C G E +++ M+E +D ++ + R C A+ G V + +
Sbjct: 54 SNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRAL 113
Query: 111 RRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALR 170
V + +A++ ++ + G + A +F +MP R+L +WN ++ G+A+ G +EAL
Sbjct: 114 SSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALC 173
Query: 171 IFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205
++ M G +PD +F VL C + + RGR+
Sbjct: 174 LYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGRE 208
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 57.0 bits (139), Expect = 4e-11
Identities = 14/49 (28%), Positives = 33/49 (67%)
Query: 148 NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSH 196
+++T+N++I G+ + G+ EEAL++F++M + G KP+ ++ ++
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 9e-10
Identities = 62/254 (24%), Positives = 109/254 (42%), Gaps = 27/254 (10%)
Query: 83 LFSFGIVLRACA-------GLAALRLGKEVHCQYIRRSGCK-DVIIESALVDLYAKCGCV 134
L +F +++ CA L LRL +E +G K D + + L+ AK G V
Sbjct: 437 LSTFNMLMSVCASSQDIDGALRVLRLVQE--------AGLKADCKLYTTLISTCAKSGKV 488
Query: 135 DFAHQIFLQMPVR----NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGV 190
D ++F +M N+ T+ ++I G A+ G+ +A + M KPD V F +
Sbjct: 489 DAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 548
Query: 191 LSACSHMGLIDRGRKHFASMTKEYR-IKPKIEHYNCMVDLLGRAGLLEEAE---TLIENA 246
+SAC G +DR A M E I P ++ AG ++ A+ +I
Sbjct: 549 ISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY 608
Query: 247 DCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPDCHLSYVLLDNVYRAVGRWND 304
+ + ++ + + +C+ + A + + + +KPD L+D A G +
Sbjct: 609 NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHA-GDLDK 667
Query: 305 AFKIRTLMKYSGVK 318
AF+I + G+K
Sbjct: 668 AFEILQDARKQGIK 681
|
Length = 1060 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 7e-07
Identities = 15/30 (50%), Positives = 23/30 (76%)
Query: 150 ITWNSMISGFAQNGRGEEALRIFDDMTEGG 179
+T+NS+ISG+ + G+ EEAL +F +M E G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKG 30
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 8e-07
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 150 ITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPD 183
+T+N++I G + GR EEAL +F +M E G +PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 42.3 bits (101), Expect = 5e-06
Identities = 10/33 (30%), Positives = 22/33 (66%)
Query: 143 QMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
+ +++T+N++I G + GR +EA+ + D+M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 41.2 bits (98), Expect = 1e-05
Identities = 11/49 (22%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 50 KNSVSSSALLQGYCQTGDFESVIRIFREMEE----IDLFSFGIVLRACA 94
+ V+ + L+ GYC+ G E +++F EM++ +++++ I++
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 4e-05
Identities = 17/49 (34%), Positives = 31/49 (63%), Gaps = 4/49 (8%)
Query: 20 NVVVESSLVDMYGKCGLVDESHRVFDKMLKK----NSVSSSALLQGYCQ 64
+VV ++L+D Y K G V+E+ ++F++M K+ N + S L+ G C+
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 7e-05
Identities = 62/283 (21%), Positives = 123/283 (43%), Gaps = 25/283 (8%)
Query: 3 KQGK-----EVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKN----SV 53
K GK EV +++ G+ NV +L+D + G V ++ + M KN V
Sbjct: 484 KSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRV 543
Query: 54 SSSALLQGYCQTGDFESVIRIFREME------EIDLFSFGIVLRACAGLAALRLGKEVHC 107
+AL+ Q+G + + EM+ + D + G +++ACA + KEV+
Sbjct: 544 VFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY- 602
Query: 108 QYIRRSGCKDVI-IESALVDLYAKCGCVDFAHQIFLQMPVRNL----ITWNSMISGFAQN 162
Q I K + + V+ ++ G DFA I+ M + + + +++++
Sbjct: 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHA 662
Query: 163 GRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEH 222
G ++A I D + G K VS+ ++ ACS+ + + + + K +++P +
Sbjct: 663 GDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDI-KSIKLRPTVST 721
Query: 223 YNCMVDLLGRAGLLEEA-ETL--IENADCRHDSSLWEVLLGAC 262
N ++ L L +A E L ++ ++ + +LL A
Sbjct: 722 MNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVAS 764
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.001
Identities = 46/257 (17%), Positives = 92/257 (35%), Gaps = 50/257 (19%)
Query: 22 VVESSLVDMYGKCGLVDESHRVFDKM------LKKNSVSSSALLQGYCQTGDFESVIRIF 75
VV ++L+ G+ G VD + V +M + + ++ AL++ G + ++
Sbjct: 543 VVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602
Query: 76 REMEEIDLFSF----GIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKC 131
+ + E ++ I + +C+ ++ ++ D + SALVD+
Sbjct: 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHA 662
Query: 132 GCVDFAHQIFLQMPVR-----------------NLITW---------------------- 152
G +D A +I + N W
Sbjct: 663 GDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTM 722
Query: 153 NSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTK 212
N++I+ + + +AL + +M G P+ +++ +L A D G S K
Sbjct: 723 NALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLL-SQAK 781
Query: 213 EYRIKPKIEHYNCMVDL 229
E IKP + C+ L
Sbjct: 782 EDGIKPNLVMCRCITGL 798
|
Length = 1060 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 35.6 bits (83), Expect = 0.001
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 149 LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKP 182
L T+N+++ A+ G + AL + ++M G KP
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.003
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVR----NLITWNSMISGFAQ 161
DV+ + L+D Y K G V+ A ++F +M R N+ T++ +I G +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 34.0 bits (79), Expect = 0.004
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 53 VSSSALLQGYCQTGDFESVIRIFREMEEIDL 83
V+ ++L+ GYC+ G E + +F+EM+E +
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 337 | |||
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.95 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.95 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.95 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.93 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.92 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.91 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.91 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.9 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.9 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.88 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.87 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.86 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.85 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.84 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.81 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.8 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.78 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.78 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.76 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.76 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.74 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.74 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.73 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.73 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.72 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.71 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.71 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.7 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.7 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.68 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.67 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.64 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.64 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.63 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.63 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.63 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.62 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.62 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.62 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.62 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.6 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.6 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.56 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.56 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.56 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.54 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.53 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.53 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.5 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.49 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.49 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.48 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.47 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.47 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.47 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.44 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.43 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.43 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.41 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.41 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.4 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.39 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.37 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.36 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.36 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.33 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.32 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.32 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.32 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.29 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.28 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.27 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.25 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.25 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 99.2 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.18 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.17 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.17 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.16 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.12 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.1 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.09 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.09 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.08 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.07 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.07 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.06 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.04 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.03 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.02 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.02 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.02 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 99.0 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.99 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.96 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.94 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.94 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.94 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.93 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.92 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.91 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.91 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.88 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.88 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.87 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.86 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.82 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.81 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.8 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.79 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.79 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.78 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.78 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.77 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.76 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.76 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.76 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.75 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.71 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.7 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.68 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.67 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.66 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.66 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.65 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.64 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.63 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.62 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.6 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.59 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.58 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.58 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.55 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.49 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.39 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.39 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.38 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.35 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.35 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.34 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.33 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.32 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 98.27 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.27 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.26 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 98.25 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.25 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.25 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.23 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.21 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.16 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 98.16 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.15 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.15 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.15 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.14 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.14 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.13 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 98.13 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.11 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.09 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.09 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.09 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 98.08 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 98.07 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.06 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.06 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 98.04 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.03 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.02 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.02 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.02 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.97 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.97 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.96 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.95 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.94 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.92 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.92 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.86 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.86 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.85 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.85 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.84 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.82 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.81 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.78 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.75 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.74 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.73 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.72 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.71 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.71 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.66 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.66 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.6 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.59 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.58 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.58 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.54 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.54 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.54 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.53 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.51 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.5 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.49 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.47 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.44 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.43 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.39 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 97.39 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.35 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.33 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.31 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.31 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 97.24 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.24 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.23 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 97.22 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.19 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 97.14 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.12 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.05 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 97.03 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.03 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 97.02 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 97.0 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 96.97 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.94 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.92 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.9 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 96.89 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.88 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.83 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.8 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.79 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.78 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.75 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.74 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.57 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.54 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.54 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.49 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.39 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.37 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.34 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 96.29 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 96.2 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.15 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 96.14 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.11 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 96.1 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 96.1 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.07 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 96.07 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 96.05 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.02 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 96.02 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 96.01 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 95.9 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.83 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.73 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.7 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.65 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.62 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 95.6 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.52 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.52 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.51 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 95.51 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.37 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.33 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 95.21 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.14 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 95.12 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 95.11 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.03 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 95.0 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 94.92 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 94.91 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 94.82 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 94.81 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 94.71 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 94.68 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 94.68 | |
| PRK09687 | 280 | putative lyase; Provisional | 94.6 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 94.21 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 94.13 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 93.82 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 93.48 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 93.24 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 92.93 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 92.81 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 92.65 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 92.65 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 92.63 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 92.58 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 92.58 | |
| PRK09687 | 280 | putative lyase; Provisional | 92.56 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 92.51 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 92.36 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 92.3 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 92.15 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 92.02 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 91.81 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 91.79 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 91.74 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 91.56 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 91.55 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 91.42 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 91.34 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 91.31 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 91.27 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 91.25 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 91.23 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 91.18 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 91.09 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 90.76 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 90.56 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 90.53 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 90.33 | |
| PRK12798 | 421 | chemotaxis protein; Reviewed | 90.27 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 90.26 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 90.23 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 90.13 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 90.08 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 90.06 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 90.04 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 89.86 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 89.72 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 89.55 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 89.39 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 89.37 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 89.34 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 89.31 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 89.2 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 88.8 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 88.73 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 88.67 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 88.55 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 88.26 | |
| PF09477 | 116 | Type_III_YscG: Bacterial type II secretion system | 88.2 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 88.08 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 88.05 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 87.87 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 87.55 | |
| cd08819 | 88 | CARD_MDA5_2 Caspase activation and recruitment dom | 87.03 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 86.75 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 86.43 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 86.42 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 86.15 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 85.9 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 85.86 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 85.65 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 85.22 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 85.11 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 84.9 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 84.9 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 84.67 | |
| smart00386 | 33 | HAT HAT (Half-A-TPR) repeats. Present in several R | 84.58 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 84.39 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 84.36 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 84.09 | |
| cd08819 | 88 | CARD_MDA5_2 Caspase activation and recruitment dom | 83.99 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 83.14 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 82.66 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 82.45 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 82.1 | |
| KOG4077 | 149 | consensus Cytochrome c oxidase, subunit Va/COX6 [E | 81.83 | |
| PF09477 | 116 | Type_III_YscG: Bacterial type II secretion system | 81.79 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 81.57 | |
| KOG0991 | 333 | consensus Replication factor C, subunit RFC2 [Repl | 81.0 | |
| PF09670 | 379 | Cas_Cas02710: CRISPR-associated protein (Cas_Cas02 | 80.67 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 80.56 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 80.33 |
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-57 Score=414.87 Aligned_cols=327 Identities=38% Similarity=0.710 Sum_probs=312.3
Q ss_pred HHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHcccCChhhHHHHHHHHHcCCChhHHHHHHHHHhh----cC
Q 037592 7 EVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEE----ID 82 (337)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~ 82 (337)
+++..+.+.|+.||..+|++|+.+|++.|++++|.++|++|..+|..+||++|.+|++.|++++|+++|++|.+ ||
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd 324 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID 324 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 33333344455566677788999999999999999999999999999999999999999999999999999976 99
Q ss_pred cccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhC
Q 037592 83 LFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQN 162 (337)
Q Consensus 83 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~ 162 (337)
..||+.++.+|++.|++++|.+++..|.+.|+.|+..+++.|+++|++.|++++|.++|++|..||..+||+||.+|++.
T Consensus 325 ~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~ 404 (697)
T PLN03081 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNH 404 (697)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 037592 163 GRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETL 242 (337)
Q Consensus 163 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 242 (337)
|+.++|+++|++|.+.|+.||..||+.++.+|++.|..++|.++|+.|.+..|+.|+..+|+.++.+|++.|++++|.++
T Consensus 405 G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~ 484 (697)
T PLN03081 405 GRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAM 484 (697)
T ss_pred CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987789999999999999999999999999999
Q ss_pred HHHhcCCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCCccCCC
Q 037592 243 IENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPG 322 (337)
Q Consensus 243 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 322 (337)
+++++..|+..+|++++.+|...|+++.|..+++++.+..|++..+|..|+.+|.+.|+|++|.+++++|.+.|+++.|+
T Consensus 485 ~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g 564 (697)
T PLN03081 485 IRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPA 564 (697)
T ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCC
Confidence 99999999999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred Ccceecccccc
Q 037592 323 KSWIEANSKLN 333 (337)
Q Consensus 323 ~~~~~~~~~~~ 333 (337)
.+|+++.+.++
T Consensus 565 ~s~i~~~~~~~ 575 (697)
T PLN03081 565 CTWIEVKKQDH 575 (697)
T ss_pred eeEEEECCeEE
Confidence 99999987765
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-54 Score=403.87 Aligned_cols=332 Identities=34% Similarity=0.678 Sum_probs=318.0
Q ss_pred chhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHcccCChhhHHHHHHHHHcCCChhHHHHHHHHHhh-
Q 037592 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEE- 80 (337)
Q Consensus 2 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 80 (337)
+++|.++++.|.+.|+.|+..+|++|+.+|++.|++++|.++|++|.++|..+|+.+|.+|++.|+.++|+.+|++|..
T Consensus 405 ~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~ 484 (857)
T PLN03077 405 LDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT 484 (857)
T ss_pred HHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 5677888888888888888888899999999999999999999999999999999999999999999999999999986
Q ss_pred --cCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHH
Q 037592 81 --IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISG 158 (337)
Q Consensus 81 --~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~ 158 (337)
||..||+.++.+|++.|+.+.+.+++..+++.|+.++..+++.|+++|++.|++++|.++|+++ .+|..+||++|.+
T Consensus 485 ~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~ 563 (857)
T PLN03077 485 LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTG 563 (857)
T ss_pred CCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999 8999999999999
Q ss_pred HHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHH
Q 037592 159 FAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238 (337)
Q Consensus 159 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 238 (337)
|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+..|+.|+..+|+.++.+|++.|++++
T Consensus 564 ~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~e 643 (857)
T PLN03077 564 YVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTE 643 (857)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHH
Confidence 99999999999999999999999999999999999999999999999999997678999999999999999999999999
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCCc
Q 037592 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVK 318 (337)
Q Consensus 239 A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 318 (337)
|.+++++|+.+||..+|++|+.+|..+|+.+.++...+++.++.|+++..|..|...|...|+|++|.++.+.|++.|++
T Consensus 644 A~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~ 723 (857)
T PLN03077 644 AYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLT 723 (857)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcceeccccccC
Q 037592 319 KMPGKSWIEANSKLNH 334 (337)
Q Consensus 319 ~~~~~~~~~~~~~~~~ 334 (337)
++|+.|||++.+.++.
T Consensus 724 k~~g~s~ie~~~~~~~ 739 (857)
T PLN03077 724 VDPGCSWVEVKGKVHA 739 (857)
T ss_pred CCCCccEEEECCEEEE
Confidence 9999999999987753
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-53 Score=389.49 Aligned_cols=322 Identities=22% Similarity=0.275 Sum_probs=307.3
Q ss_pred CchhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHcc----cCChhhHHHHHHHHHcCCChhHHHHHHH
Q 037592 1 RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKML----KKNSVSSSALLQGYCQTGDFESVIRIFR 76 (337)
Q Consensus 1 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 76 (337)
+++.|.++|+.|.+.|+.||..+|++||.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++|+++|+
T Consensus 452 ~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~ 531 (1060)
T PLN03218 452 DIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYG 531 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999995 6899999999999999999999999999
Q ss_pred HHhh----cCcccHHHHHHHHHhhchhhhhHHHHHHHHH--hhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC----C
Q 037592 77 EMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIR--RSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP----V 146 (337)
Q Consensus 77 ~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~ 146 (337)
+|.+ ||..+|+.++.+|++.|++++|.+++++|.. .|+.||..+|+.++.+|++.|++++|.++|++|. .
T Consensus 532 ~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~ 611 (1060)
T PLN03218 532 IMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIK 611 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 9987 9999999999999999999999999999987 5788999999999999999999999999999998 5
Q ss_pred CcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHH
Q 037592 147 RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCM 226 (337)
Q Consensus 147 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 226 (337)
|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|. +.|+.|+..+|+.|
T Consensus 612 p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~-k~G~~pd~~tynsL 690 (1060)
T PLN03218 612 GTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDAR-KQGIKLGTVSYSSL 690 (1060)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH-HcCCCCCHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999994 55999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHh---cCCCchhHHHHHHHHHhcCCChhHHHHHHHHHHh--cCCCccchHHHHHHHHHHcCC
Q 037592 227 VDLLGRAGLLEEAETLIENA---DCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPDCHLSYVLLDNVYRAVGR 301 (337)
Q Consensus 227 ~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~ 301 (337)
+.+|++.|++++|.++|++| +..||..+|+.+|.+|++.|++++|.++|++|.+ ..|+ ..+|..++.+|.+.|+
T Consensus 691 I~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd-~~Ty~sLL~a~~k~G~ 769 (1060)
T PLN03218 691 MGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN-TITYSILLVASERKDD 769 (1060)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCC
Confidence 99999999999999999987 5789999999999999999999999999999987 6688 7999999999999999
Q ss_pred hhhHHHHHHHHHHhCCccCCCCc
Q 037592 302 WNDAFKIRTLMKYSGVKKMPGKS 324 (337)
Q Consensus 302 ~~~A~~~~~~m~~~~~~~~~~~~ 324 (337)
+++|.+++++|.+.|+.|+....
T Consensus 770 le~A~~l~~~M~k~Gi~pd~~ty 792 (1060)
T PLN03218 770 ADVGLDLLSQAKEDGIKPNLVMC 792 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHH
Confidence 99999999999999999876543
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-51 Score=380.22 Aligned_cols=326 Identities=20% Similarity=0.292 Sum_probs=294.7
Q ss_pred CchhhHHHHHHHHhcCCC--------------------------------CchHhHHHHHHHHHhcCChHHHHHHHHHc-
Q 037592 1 RLKQGKEVHAKVITLGLC--------------------------------GNVVVESSLVDMYGKCGLVDESHRVFDKM- 47 (337)
Q Consensus 1 ~~~~a~~~~~~~~~~~~~--------------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~- 47 (337)
++++|+++|+.|.+.|+. ||..+|+.++.+|++.|++++|.++|+.|
T Consensus 385 ~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~ 464 (1060)
T PLN03218 385 RIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQ 464 (1060)
T ss_pred CHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHH
Confidence 356777777777776642 67888999999999999999999999998
Q ss_pred ---ccCChhhHHHHHHHHHcCCChhHHHHHHHHHhh----cCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchh
Q 037592 48 ---LKKNSVSSSALLQGYCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120 (337)
Q Consensus 48 ---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 120 (337)
..||..+|+.+|.+|++.|++++|.++|++|.+ ||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+
T Consensus 465 ~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vT 544 (1060)
T PLN03218 465 EAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVV 544 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHH
Confidence 457899999999999999999999999999986 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCC------CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHH
Q 037592 121 ESALVDLYAKCGCVDFAHQIFLQMP------VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSAC 194 (337)
Q Consensus 121 ~~~l~~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 194 (337)
|+.++.+|++.|++++|.++|++|. .||..+|+++|.+|++.|++++|.++|++|.+.|+.|+..+|+.++.+|
T Consensus 545 YnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay 624 (1060)
T PLN03218 545 FNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSC 624 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHH
Confidence 9999999999999999999999984 5889999999999999999999999999999999999999999999999
Q ss_pred hhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh---cCCCchhHHHHHHHHHhcCCChhHH
Q 037592 195 SHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA---DCRHDSSLWEVLLGACTTFRNAHVA 271 (337)
Q Consensus 195 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a 271 (337)
++.|++++|.++|++| ...|+.||..+|+.++.+|++.|++++|.+++++| +..|+..+|+.+|.+|++.|++++|
T Consensus 625 ~k~G~~deAl~lf~eM-~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA 703 (1060)
T PLN03218 625 SQKGDWDFALSIYDDM-KKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKA 703 (1060)
T ss_pred HhcCCHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHH
Confidence 9999999999999999 45599999999999999999999999999999886 5789999999999999999999999
Q ss_pred HHHHHHHHh--cCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCCccCCCCcceec
Q 037592 272 ERVAKKIME--LKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEA 328 (337)
Q Consensus 272 ~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ 328 (337)
.++|++|.+ ..|+ ..+|+.|+.+|++.|++++|.++|++|.+.|+.|+..+....+
T Consensus 704 ~~lf~eM~~~g~~Pd-vvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL 761 (1060)
T PLN03218 704 LELYEDIKSIKLRPT-VSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761 (1060)
T ss_pred HHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 999999976 5677 7899999999999999999999999999999998766544443
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-52 Score=376.89 Aligned_cols=319 Identities=25% Similarity=0.478 Sum_probs=302.4
Q ss_pred chhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHcccCChhhHHHHHHHHHcCCChhHHHHHHHHHhh-
Q 037592 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEE- 80 (337)
Q Consensus 2 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 80 (337)
++.|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|..||..+|+.++.+|++.|++++|+++|++|.+
T Consensus 139 ~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~ 218 (697)
T PLN03081 139 IRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWED 218 (697)
T ss_pred HHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence 4678899999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ---cCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHH
Q 037592 81 ---IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMIS 157 (337)
Q Consensus 81 ---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~ 157 (337)
||..+|..++.+|...|..+.+.+++..+.+.|..|+..+++.|+.+|++.|++++|.++|++|..+|..+||.+|.
T Consensus 219 g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~ 298 (697)
T PLN03081 219 GSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLA 298 (697)
T ss_pred CCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChH
Q 037592 158 GFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237 (337)
Q Consensus 158 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 237 (337)
+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+ .|++||..+++.|+.+|+++|+++
T Consensus 299 ~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~-~g~~~d~~~~~~Li~~y~k~G~~~ 377 (697)
T PLN03081 299 GYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIR-TGFPLDIVANTALVDLYSKWGRME 377 (697)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHH-hCCCCCeeehHHHHHHHHHCCCHH
Confidence 9999999999999999999999999999999999999999999999999999954 599999999999999999999999
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHhcCCChhHHHHHHHHHHh--cCCCccchHHHHHHHHHHcCChhhHHHHHHHHHH-
Q 037592 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKY- 314 (337)
Q Consensus 238 ~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~- 314 (337)
+|.++|++|. .||..+|+.+|.+|++.|+.++|.++|++|.+ ..|+ ..+|..++.+|.+.|..++|.++|+.|.+
T Consensus 378 ~A~~vf~~m~-~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~ 455 (697)
T PLN03081 378 DARNVFDRMP-RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN-HVTFLAVLSACRYSGLSEQGWEIFQSMSEN 455 (697)
T ss_pred HHHHHHHhCC-CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 9999999996 57999999999999999999999999999987 7788 79999999999999999999999999986
Q ss_pred hCCccCCCC
Q 037592 315 SGVKKMPGK 323 (337)
Q Consensus 315 ~~~~~~~~~ 323 (337)
.|+.|+..+
T Consensus 456 ~g~~p~~~~ 464 (697)
T PLN03081 456 HRIKPRAMH 464 (697)
T ss_pred cCCCCCccc
Confidence 699887654
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-49 Score=370.00 Aligned_cols=317 Identities=28% Similarity=0.461 Sum_probs=296.6
Q ss_pred chhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHcccCChhhHHHHHHHHHcCCChhHHHHHHHHHhh-
Q 037592 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEE- 80 (337)
Q Consensus 2 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 80 (337)
++.|.+++..|.+.|+.||..+|++|+.+|++.|++++|.++|++|..||..+|+.+|.+|++.|++++|+++|++|.+
T Consensus 304 ~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~ 383 (857)
T PLN03077 304 ERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQD 383 (857)
T ss_pred hHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 4567777888888888888999999999999999999999999999999999999999999999999999999999987
Q ss_pred ---cCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHH
Q 037592 81 ---IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMIS 157 (337)
Q Consensus 81 ---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~ 157 (337)
||..+|+.++.+|++.|+++.|.++++.+.+.|+.|+..+++.|+.+|++.|++++|.++|++|..+|..+|+.+|.
T Consensus 384 g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~ 463 (857)
T PLN03077 384 NVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIA 463 (857)
T ss_pred CCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChH
Q 037592 158 GFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237 (337)
Q Consensus 158 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 237 (337)
+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|.++.+.+++..+++ .|+.++..++++|+.+|+++|+++
T Consensus 464 ~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~-~g~~~~~~~~naLi~~y~k~G~~~ 541 (857)
T PLN03077 464 GLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLR-TGIGFDGFLPNALLDLYVRCGRMN 541 (857)
T ss_pred HHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHH-hCCCccceechHHHHHHHHcCCHH
Confidence 99999999999999999986 5999999999999999999999999999999955 499999999999999999999999
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHhcCCChhHHHHHHHHHHh--cCCCccchHHHHHHHHHHcCChhhHHHHHHHHH-H
Q 037592 238 EAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMK-Y 314 (337)
Q Consensus 238 ~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~ 314 (337)
+|.++|+++ .||..+|+++|.+|++.|+.++|.++|++|.+ ..|+ ..+|..++.+|.+.|++++|.++|++|. +
T Consensus 542 ~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~ 618 (857)
T PLN03077 542 YAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEK 618 (857)
T ss_pred HHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHH
Confidence 999999988 78999999999999999999999999999987 6677 7899999999999999999999999998 6
Q ss_pred hCCccCCCC
Q 037592 315 SGVKKMPGK 323 (337)
Q Consensus 315 ~~~~~~~~~ 323 (337)
.|+.|+..+
T Consensus 619 ~gi~P~~~~ 627 (857)
T PLN03077 619 YSITPNLKH 627 (857)
T ss_pred hCCCCchHH
Confidence 788886543
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-24 Score=204.96 Aligned_cols=311 Identities=11% Similarity=0.068 Sum_probs=247.0
Q ss_pred CchhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHcc---cCChhhHHHHHHHHHcCCChhHHHHHHHH
Q 037592 1 RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKML---KKNSVSSSALLQGYCQTGDFESVIRIFRE 77 (337)
Q Consensus 1 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 77 (337)
++++|..+++.+.+.+ +.+...+..++..+.+.|++++|..+++.+. ..+...|..++.++...|++++|...|++
T Consensus 548 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 626 (899)
T TIGR02917 548 NEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKK 626 (899)
T ss_pred CHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4578888888888765 4566778888888999999999999998884 23567788888999999999999999998
Q ss_pred Hhh--c-CcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHh
Q 037592 78 MEE--I-DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP---VRNLIT 151 (337)
Q Consensus 78 ~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~ 151 (337)
+.+ | +...+..+..++...|++++|..+++++.+..+ .+..++..++..+...|++++|..+++.+. +.+...
T Consensus 627 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 705 (899)
T TIGR02917 627 LLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKP-DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALG 705 (899)
T ss_pred HHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHH
Confidence 877 3 445677788888888999999999988887754 567788888888888899999988888886 345667
Q ss_pred HHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 037592 152 WNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLG 231 (337)
Q Consensus 152 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 231 (337)
+..+...+...|++++|...|+++...+ |+..++..+..++.+.|++++|.+.++.+++. .+.+...+..++..|.
T Consensus 706 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~ 781 (899)
T TIGR02917 706 FELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYL 781 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 7778888888888888888888888753 44466677778888888888888888888654 3566778888888888
Q ss_pred hcCChHHHHHHHHHh-c-CCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHH
Q 037592 232 RAGLLEEAETLIENA-D-CRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIR 309 (337)
Q Consensus 232 ~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 309 (337)
..|++++|.+.|+++ . .+++...++.+...+...|+ ++|+..++++.+..|+++..+..++.++...|++++|..++
T Consensus 782 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 860 (899)
T TIGR02917 782 AQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLL 860 (899)
T ss_pred HCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHH
Confidence 888888888888875 2 33456667777778888888 77888888888888888888888888888888888888888
Q ss_pred HHHHHhCCc
Q 037592 310 TLMKYSGVK 318 (337)
Q Consensus 310 ~~m~~~~~~ 318 (337)
+++.+.+..
T Consensus 861 ~~a~~~~~~ 869 (899)
T TIGR02917 861 RKAVNIAPE 869 (899)
T ss_pred HHHHhhCCC
Confidence 888876653
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.6e-24 Score=202.98 Aligned_cols=306 Identities=15% Similarity=0.084 Sum_probs=172.7
Q ss_pred chhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHccc---CChhhHHHHHHHHHcCCChhHHHHHHHHH
Q 037592 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLK---KNSVSSSALLQGYCQTGDFESVIRIFREM 78 (337)
Q Consensus 2 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 78 (337)
+++|.++++.+.+.+ +.+..++..+...+.+.|+.++|...|+++.. .+...+..++..+...|++++|.++++++
T Consensus 515 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 593 (899)
T TIGR02917 515 PDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEA 593 (899)
T ss_pred HHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 445566666665543 33455555566666666666666666665522 13344555556666666666666666665
Q ss_pred hh---cCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhH
Q 037592 79 EE---IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP---VRNLITW 152 (337)
Q Consensus 79 ~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~ 152 (337)
.+ .+...|..+..++...|++++|...++++.+..+ .+...+..+..++.+.|++++|..+++++. +.+..++
T Consensus 594 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 672 (899)
T TIGR02917 594 ADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQ 672 (899)
T ss_pred HHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Confidence 54 2334555556666666666666666666655543 344555556666666666666666665554 2234555
Q ss_pred HHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 037592 153 NSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGR 232 (337)
Q Consensus 153 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 232 (337)
..++..+...|++++|..+++.+.+.+ +++...+..+...+...|++++|.+.++.++.. .|+..++..++.++.+
T Consensus 673 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~ 748 (899)
T TIGR02917 673 IGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR---APSSQNAIKLHRALLA 748 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHH
Confidence 556666666666666666666665543 224444555555555666666666666665432 3444555555666666
Q ss_pred cCChHHHHHHHHHh-c-CCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHH
Q 037592 233 AGLLEEAETLIENA-D-CRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRT 310 (337)
Q Consensus 233 ~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (337)
.|++++|.+.++++ . .+.+...+..+...|...|++++|...|+++.+..|+++..+..++..+...|+ .+|+..++
T Consensus 749 ~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~ 827 (899)
T TIGR02917 749 SGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAE 827 (899)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHH
Confidence 66666666665553 1 223344455555556666666666666666666666655566666666666666 55666666
Q ss_pred HHHH
Q 037592 311 LMKY 314 (337)
Q Consensus 311 ~m~~ 314 (337)
+..+
T Consensus 828 ~~~~ 831 (899)
T TIGR02917 828 KALK 831 (899)
T ss_pred HHHh
Confidence 5554
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-24 Score=185.81 Aligned_cols=290 Identities=13% Similarity=0.084 Sum_probs=243.4
Q ss_pred HHHHHHhcCChHHHHHHHHHcccC---ChhhHHHHHHHHHcCCChhHHHHHHHHHhh-cCc------ccHHHHHHHHHhh
Q 037592 27 LVDMYGKCGLVDESHRVFDKMLKK---NSVSSSALLQGYCQTGDFESVIRIFREMEE-IDL------FSFGIVLRACAGL 96 (337)
Q Consensus 27 l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~------~~~~~l~~~~~~~ 96 (337)
....+...|++++|+..|+++... +..++..+...+...|++++|..+++.+.. |+. ..+..++..+...
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 455667889999999999999533 456788999999999999999999999987 332 3577788999999
Q ss_pred chhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCC--Cc------HHhHHHHHHHHHhCCCHhHH
Q 037592 97 AALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV--RN------LITWNSMISGFAQNGRGEEA 168 (337)
Q Consensus 97 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~------~~~~~~l~~~~~~~~~~~~a 168 (337)
|++++|..+|+++.+..+ .+..++..++.++.+.|++++|.+.++++.. |+ ...+..++..+...|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEGD-FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCCc-chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 999999999999998744 6678899999999999999999999998863 21 12456678888999999999
Q ss_pred HHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHh
Q 037592 169 LRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPK--IEHYNCMVDLLGRAGLLEEAETLIENA 246 (337)
Q Consensus 169 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 246 (337)
...|+++.+.. +.+...+..+...+.+.|++++|.++++++... .|+ ..+++.++.+|...|++++|...++++
T Consensus 200 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 275 (389)
T PRK11788 200 RALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRA 275 (389)
T ss_pred HHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999998853 224557777888999999999999999999654 333 466788999999999999999999985
Q ss_pred -cCCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHH---cCChhhHHHHHHHHHHhCCccCCC
Q 037592 247 -DCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRA---VGRWNDAFKIRTLMKYSGVKKMPG 322 (337)
Q Consensus 247 -~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~ 322 (337)
...|+...+..++..+.+.|++++|..+++++.+..|++ ..+..++..+.. .|+.+++..++++|.+++++|+|.
T Consensus 276 ~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~-~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 276 LEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSL-RGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCH-HHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 456777777888899999999999999999999999995 567666666554 468999999999999999998888
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.2e-23 Score=177.33 Aligned_cols=276 Identities=12% Similarity=0.114 Sum_probs=232.1
Q ss_pred CchhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHcccCC-------hhhHHHHHHHHHcCCChhHHHH
Q 037592 1 RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKN-------SVSSSALLQGYCQTGDFESVIR 73 (337)
Q Consensus 1 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~ 73 (337)
++++|...|..+.+.+ +.+..++..+...+...|++++|..+++.+.... ...+..++..|.+.|++++|..
T Consensus 50 ~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~ 128 (389)
T PRK11788 50 QPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEE 128 (389)
T ss_pred ChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 4678999999999975 4466789999999999999999999999984431 2457888999999999999999
Q ss_pred HHHHHhh---cCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCc----hhHHHHHHHHHhcCCHHHHHHHHhcCC-
Q 037592 74 IFREMEE---IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV----IIESALVDLYAKCGCVDFAHQIFLQMP- 145 (337)
Q Consensus 74 ~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~- 145 (337)
+|+++.+ .+..++..++.++.+.|++++|.+.++.+.+.++.+.. ..+..+...+.+.|++++|...|+++.
T Consensus 129 ~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 208 (389)
T PRK11788 129 LFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALA 208 (389)
T ss_pred HHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 9999987 45568889999999999999999999999987654322 245567888899999999999999987
Q ss_pred --CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHH
Q 037592 146 --VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY 223 (337)
Q Consensus 146 --~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 223 (337)
+.+...+..++..|.+.|++++|.++|+++.+.+......++..++.+|...|++++|...++.+.+. .|+...+
T Consensus 209 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~ 285 (389)
T PRK11788 209 ADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE---YPGADLL 285 (389)
T ss_pred HCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHH
Confidence 23456788899999999999999999999988643333456788889999999999999999999643 5676777
Q ss_pred HHHHHHHHhcCChHHHHHHHHH-hcCCCchhHHHHHHHHHhc---CCChhHHHHHHHHHHh
Q 037592 224 NCMVDLLGRAGLLEEAETLIEN-ADCRHDSSLWEVLLGACTT---FRNAHVAERVAKKIME 280 (337)
Q Consensus 224 ~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~ 280 (337)
..++..+.+.|++++|..++++ +...|+..++..++..+.. .|+.+++..+++++.+
T Consensus 286 ~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 286 LALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 8899999999999999999986 4667898889888877653 5689999999998886
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.7e-21 Score=171.51 Aligned_cols=312 Identities=10% Similarity=-0.015 Sum_probs=251.4
Q ss_pred CchhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHcc--cC-ChhhHHHHHHHHHcCCChhHHHHHHHH
Q 037592 1 RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKML--KK-NSVSSSALLQGYCQTGDFESVIRIFRE 77 (337)
Q Consensus 1 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 77 (337)
++++|+.+++..+..... +...+..++..+...|++++|...|+++. .| +...+..+...+...|++++|+..+++
T Consensus 57 ~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~ 135 (656)
T PRK15174 57 ETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQ 135 (656)
T ss_pred CcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 467889999999887533 34555666677778999999999999983 34 567788899999999999999999999
Q ss_pred Hhh--cC-cccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCC----cHH
Q 037592 78 MEE--ID-LFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVR----NLI 150 (337)
Q Consensus 78 ~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~ 150 (337)
+.+ |+ ...+..+..++...|++++|...++.+....+. +...+..+ ..+...|++++|...++++... +..
T Consensus 136 Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~ 213 (656)
T PRK15174 136 AWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQE 213 (656)
T ss_pred HHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchh
Confidence 988 54 446777888999999999999999988877653 33444333 3478899999999999987632 334
Q ss_pred hHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhh----HHHHHHHHHHhcCCCCCHHHHHHH
Q 037592 151 TWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDR----GRKHFASMTKEYRIKPKIEHYNCM 226 (337)
Q Consensus 151 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~~l 226 (337)
.+..+..++...|++++|+..++++.+... .+...+..+...+...|++++ |...++++++.. +.+...+..+
T Consensus 214 ~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~--P~~~~a~~~l 290 (656)
T PRK15174 214 SAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN--SDNVRIVTLY 290 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC--CCCHHHHHHH
Confidence 455567788999999999999999988643 355667778888999999986 899999997542 4457888999
Q ss_pred HHHHHhcCChHHHHHHHHHh-cCCCc-hhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhh
Q 037592 227 VDLLGRAGLLEEAETLIENA-DCRHD-SSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWND 304 (337)
Q Consensus 227 ~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 304 (337)
...+...|++++|...+++. ...|+ ...+..+..++.+.|++++|+..++++.+..|++...+..++.++...|++++
T Consensus 291 g~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~de 370 (656)
T PRK15174 291 ADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSE 370 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHH
Confidence 99999999999999999974 34444 45566777889999999999999999999999976666667888999999999
Q ss_pred HHHHHHHHHHhCCc
Q 037592 305 AFKIRTLMKYSGVK 318 (337)
Q Consensus 305 A~~~~~~m~~~~~~ 318 (337)
|...|++..+....
T Consensus 371 A~~~l~~al~~~P~ 384 (656)
T PRK15174 371 AESVFEHYIQARAS 384 (656)
T ss_pred HHHHHHHHHHhChh
Confidence 99999998776443
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-20 Score=169.35 Aligned_cols=310 Identities=13% Similarity=0.044 Sum_probs=210.9
Q ss_pred CchhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHcccC---ChhhHHHHHHHHHcCCChhHHHHHHHH
Q 037592 1 RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKK---NSVSSSALLQGYCQTGDFESVIRIFRE 77 (337)
Q Consensus 1 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~ 77 (337)
++++|+..|+..++. .|+...|..+..+|.+.|++++|++.++..+.. +...|..+..+|...|++++|+..|..
T Consensus 142 ~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~ 219 (615)
T TIGR00990 142 DFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTA 219 (615)
T ss_pred CHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 467888999888876 577788888889999999999999999888433 455777788888888888877654432
Q ss_pred Hhh--------------------------------cC-------------------------------------------
Q 037592 78 MEE--------------------------------ID------------------------------------------- 82 (337)
Q Consensus 78 ~~~--------------------------------~~------------------------------------------- 82 (337)
... |.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 299 (615)
T TIGR00990 220 SCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGL 299 (615)
T ss_pred HHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHH
Confidence 211 00
Q ss_pred -------------------------------cccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhc
Q 037592 83 -------------------------------LFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKC 131 (337)
Q Consensus 83 -------------------------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 131 (337)
...+..+...+...|++++|...+++.++..+ .....|..+..++...
T Consensus 300 ~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P-~~~~~~~~la~~~~~~ 378 (615)
T TIGR00990 300 KSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP-RVTQSYIKRASMNLEL 378 (615)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHC
Confidence 01123333344455666666666666665532 3345566666666677
Q ss_pred CCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHH
Q 037592 132 GCVDFAHQIFLQMP---VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFA 208 (337)
Q Consensus 132 g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 208 (337)
|++++|+..|+++. +.+..+|..+...+...|++++|+..|++..+... .+...+..+...+.+.|++++|+..++
T Consensus 379 g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~~~la~~~~~~g~~~eA~~~~~ 457 (615)
T TIGR00990 379 GDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSHIQLGVTQYKEGSIASSMATFR 457 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 77777777766654 23456677777777777777777777777776422 234455566677777888888888888
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cCCCch-h-------HHHHHHHHHhcCCChhHHHHHHHHHH
Q 037592 209 SMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DCRHDS-S-------LWEVLLGACTTFRNAHVAERVAKKIM 279 (337)
Q Consensus 209 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~-~-------~~~~l~~~~~~~g~~~~a~~~~~~~~ 279 (337)
.+++. .+.+...++.+...+...|++++|.+.|++. ...|+. . .++.....+...|++++|..+++++.
T Consensus 458 ~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl 535 (615)
T TIGR00990 458 RCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKAL 535 (615)
T ss_pred HHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 77543 2445677777888888888888888888763 333321 1 11112222344688888888888888
Q ss_pred hcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhC
Q 037592 280 ELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSG 316 (337)
Q Consensus 280 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 316 (337)
+++|++..++..++.++...|++++|+..|++..+..
T Consensus 536 ~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 536 IIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred hcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 8888887788888889999999999999888876643
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=6e-22 Score=165.82 Aligned_cols=309 Identities=12% Similarity=0.114 Sum_probs=220.2
Q ss_pred chhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHcccCCh-----------------------------
Q 037592 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNS----------------------------- 52 (337)
Q Consensus 2 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----------------------------- 52 (337)
+++|+.+++.+++.. +-.+..|..+..++...|+.+.|...|.+.+..|+
T Consensus 132 ~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkA 210 (966)
T KOG4626|consen 132 LQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKA 210 (966)
T ss_pred HHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHH
Confidence 566777777777763 22456677777777777777777777666532211
Q ss_pred --------hhHHHHHHHHHcCCChhHHHHHHHHHhh--cC-cccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhH
Q 037592 53 --------VSSSALLQGYCQTGDFESVIRIFREMEE--ID-LFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121 (337)
Q Consensus 53 --------~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 121 (337)
..|..|...+-.+|+...|++.|++... |+ ..+|..|...|...+.++.|...|.+++...+ ....++
T Consensus 211 i~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrp-n~A~a~ 289 (966)
T KOG4626|consen 211 IETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRP-NHAVAH 289 (966)
T ss_pred HhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCC-cchhhc
Confidence 1244444555555666666666666555 22 13566666666666666666666666665543 345556
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCC--CC-cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcC
Q 037592 122 SALVDLYAKCGCVDFAHQIFLQMP--VR-NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMG 198 (337)
Q Consensus 122 ~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 198 (337)
..+...|...|.++.|+..+++.. +| -+.+|+.|..++-..|+..+|.+.|.+.+.... -...+.+.|...+...|
T Consensus 290 gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p-~hadam~NLgni~~E~~ 368 (966)
T KOG4626|consen 290 GNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCP-NHADAMNNLGNIYREQG 368 (966)
T ss_pred cceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhc
Confidence 666666667777777777777766 33 356888888888888888888888888877422 23456777888888888
Q ss_pred chhhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHH-hcCCCch-hHHHHHHHHHhcCCChhHHHHHH
Q 037592 199 LIDRGRKHFASMTKEYRIKPK-IEHYNCMVDLLGRAGLLEEAETLIEN-ADCRHDS-SLWEVLLGACTTFRNAHVAERVA 275 (337)
Q Consensus 199 ~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~ 275 (337)
.++.|..+|...++ +.|. ....+.|...|.+.|++++|...+++ +.++|+. ..++.+...|...|+.+.|++.+
T Consensus 369 ~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y 445 (966)
T KOG4626|consen 369 KIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCY 445 (966)
T ss_pred cchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHH
Confidence 88888888888763 3454 56778888888889999999988886 5677764 46778888888889999999999
Q ss_pred HHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhC
Q 037592 276 KKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSG 316 (337)
Q Consensus 276 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 316 (337)
.+++.++|....+++.|...|-.+|+..+|++-|++..+-.
T Consensus 446 ~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 446 TRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred HHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 99999999888888899999999999999999888877643
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.1e-20 Score=167.59 Aligned_cols=309 Identities=10% Similarity=-0.029 Sum_probs=245.7
Q ss_pred CchhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHccc--C-ChhhHHHHHHHHHcCCChhHHHHHHHH
Q 037592 1 RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLK--K-NSVSSSALLQGYCQTGDFESVIRIFRE 77 (337)
Q Consensus 1 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 77 (337)
++++|...++.+.+.. +.+...+..+...+...|++++|+..|++... | +...+..++.++...|++++|...++.
T Consensus 91 ~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~ 169 (656)
T PRK15174 91 QPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLART 169 (656)
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 4688999999999885 44667888889999999999999999999843 4 567888999999999999999999998
Q ss_pred Hhh--cCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhH
Q 037592 78 MEE--IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP---VRNLITW 152 (337)
Q Consensus 78 ~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~ 152 (337)
+.. |+.......+..+...|++++|...++.+++..+.++......+...+...|++++|+..++++. +.+...+
T Consensus 170 ~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~ 249 (656)
T PRK15174 170 QAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALR 249 (656)
T ss_pred HHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHH
Confidence 876 55544333344578899999999999999887654555555666788999999999999999887 3456788
Q ss_pred HHHHHHHHhCCCHhH----HHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 037592 153 NSMISGFAQNGRGEE----ALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVD 228 (337)
Q Consensus 153 ~~l~~~~~~~~~~~~----a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 228 (337)
..+...|...|++++ |...|++..+... .+...+..+...+...|++++|...+++++... +.+...+..+..
T Consensus 250 ~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~--P~~~~a~~~La~ 326 (656)
T PRK15174 250 RSLGLAYYQSGRSREAKLQAAEHWRHALQFNS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLATH--PDLPYVRAMYAR 326 (656)
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 889999999999986 8999999988532 255678888899999999999999999997542 445677888899
Q ss_pred HHHhcCChHHHHHHHHHh-cCCCchhHHH-HHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHH
Q 037592 229 LLGRAGLLEEAETLIENA-DCRHDSSLWE-VLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAF 306 (337)
Q Consensus 229 ~~~~~g~~~~A~~~~~~~-~~~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 306 (337)
++.+.|++++|...++++ ...|+...+. .+..++...|++++|+..|+++.+..|++. ...+++|.
T Consensus 327 ~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~------------~~~~~ea~ 394 (656)
T PRK15174 327 ALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL------------PQSFEEGL 394 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc------------hhhHHHHH
Confidence 999999999999999985 3556554433 345678999999999999999999999853 24455666
Q ss_pred HHHHHHHHhCCccCCCCcc
Q 037592 307 KIRTLMKYSGVKKMPGKSW 325 (337)
Q Consensus 307 ~~~~~m~~~~~~~~~~~~~ 325 (337)
..+.+..+.--.|.....|
T Consensus 395 ~~~~~~~~~~~~~~~~~~W 413 (656)
T PRK15174 395 LALDGQISAVNLPPERLDW 413 (656)
T ss_pred HHHHHHHHhcCCccchhhH
Confidence 6666666544333333344
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-21 Score=164.36 Aligned_cols=304 Identities=15% Similarity=0.136 Sum_probs=211.9
Q ss_pred CCchHhHHHHHHHHHhcCChHHHHHHHHHcccC---ChhhHHHHHHHHHcCCChhHHHHHHHHHhh--cCcccH-HHHHH
Q 037592 18 CGNVVVESSLVDMYGKCGLVDESHRVFDKMLKK---NSVSSSALLQGYCQTGDFESVIRIFREMEE--IDLFSF-GIVLR 91 (337)
Q Consensus 18 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~-~~l~~ 91 (337)
+.-..+|+.+.+.+-..|+++.|+..++.+++. ....|..+..++...|+.+.|.+.|.+..+ |+.... +.+..
T Consensus 113 ~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgn 192 (966)
T KOG4626|consen 113 PQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGN 192 (966)
T ss_pred chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhH
Confidence 334678999999999999999999999998443 477899999999999999999999999998 554433 23444
Q ss_pred HHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCc---HHhHHHHHHHHHhCCCHhHH
Q 037592 92 ACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRN---LITWNSMISGFAQNGRGEEA 168 (337)
Q Consensus 92 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a 168 (337)
.....|+..+|...|.++++..+ .-...|+.|...+-.+|+...|+..|++...-| ..+|-.|...|...+.++.|
T Consensus 193 Llka~Grl~ea~~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~A 271 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRA 271 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHH
Confidence 45567788888888888777644 346677778888888888888888888777333 35677777777777777777
Q ss_pred HHHHHHHHhcCCCCC-HhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHh
Q 037592 169 LRIFDDMTEGGTKPD-HVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPK-IEHYNCMVDLLGRAGLLEEAETLIENA 246 (337)
Q Consensus 169 ~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 246 (337)
...|.+.... .|+ ...+..+...|-..|.+|.|+..|++.++ +.|+ +..|+.|..++...|++.+|...+.+.
T Consensus 272 vs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~---~~P~F~~Ay~NlanALkd~G~V~ea~~cYnka 346 (966)
T KOG4626|consen 272 VSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALE---LQPNFPDAYNNLANALKDKGSVTEAVDCYNKA 346 (966)
T ss_pred HHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHh---cCCCchHHHhHHHHHHHhccchHHHHHHHHHH
Confidence 7777776663 443 34555566666677777777777777753 3444 566777777777777777777777652
Q ss_pred -cCCC-chhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCCccCCCCc
Q 037592 247 -DCRH-DSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKS 324 (337)
Q Consensus 247 -~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 324 (337)
...| ...+.+.|...|...|+++.|..+|..+.+..|.....++.|...|-++|+.++|+..|++..+ ++|..+-+
T Consensus 347 L~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda 424 (966)
T KOG4626|consen 347 LRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADA 424 (966)
T ss_pred HHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHH
Confidence 2222 2344566666666666666666666666666666666666666666666666666666666555 44444443
Q ss_pred ceecc
Q 037592 325 WIEAN 329 (337)
Q Consensus 325 ~~~~~ 329 (337)
...++
T Consensus 425 ~~NmG 429 (966)
T KOG4626|consen 425 LSNMG 429 (966)
T ss_pred HHhcc
Confidence 33333
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.5e-19 Score=172.06 Aligned_cols=207 Identities=9% Similarity=0.029 Sum_probs=117.5
Q ss_pred CchhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHccc--CCh---hhHH------------HHHHHHH
Q 037592 1 RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLK--KNS---VSSS------------ALLQGYC 63 (337)
Q Consensus 1 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~---~~~~------------~l~~~~~ 63 (337)
++++|+..|+..++.. +.+..++..+...+.+.|++++|+..|++... |+. ..|. .....+.
T Consensus 284 ~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~ 362 (1157)
T PRK11447 284 QGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAAL 362 (1157)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHH
Confidence 3567888888887764 33667777888888888888888888887743 221 1121 2234567
Q ss_pred cCCChhHHHHHHHHHhh--c-CcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHH
Q 037592 64 QTGDFESVIRIFREMEE--I-DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQI 140 (337)
Q Consensus 64 ~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 140 (337)
+.|++++|+..|+++.+ | +...+..+..++...|++++|++.|+++++..+ .+...+..+...|. .++.++|+.+
T Consensus 363 ~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l~~-~~~~~~A~~~ 440 (1157)
T PRK11447 363 KANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLANLYR-QQSPEKALAF 440 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH-hcCHHHHHHH
Confidence 78888888888888877 3 334566677788888888888888888887654 33444444444432 2233444444
Q ss_pred HhcCCCCc------------HHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHH
Q 037592 141 FLQMPVRN------------LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFA 208 (337)
Q Consensus 141 ~~~~~~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 208 (337)
++.+.... ...+..+...+...|++++|+..|++..+..+. +...+..+...+.+.|++++|...++
T Consensus 441 l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~ 519 (1157)
T PRK11447 441 IASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMR 519 (1157)
T ss_pred HHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 43332100 011222333444455555555555555443111 22233334444555555555555555
Q ss_pred HHH
Q 037592 209 SMT 211 (337)
Q Consensus 209 ~~~ 211 (337)
+++
T Consensus 520 ~al 522 (1157)
T PRK11447 520 RLA 522 (1157)
T ss_pred HHH
Confidence 543
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.5e-18 Score=155.59 Aligned_cols=291 Identities=14% Similarity=0.007 Sum_probs=233.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHc--ccCChhhHHHHHHHHHcCCChhHHHHHHHHHhh--cC-cccHHHHHHHHHhhc
Q 037592 23 VESSLVDMYGKCGLVDESHRVFDKM--LKKNSVSSSALLQGYCQTGDFESVIRIFREMEE--ID-LFSFGIVLRACAGLA 97 (337)
Q Consensus 23 ~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~ 97 (337)
.+......+.+.|++++|+..|++. ..|+...|..+..+|.+.|++++|++.+++..+ |+ ..++..+..++...|
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg 208 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLG 208 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Confidence 3556778899999999999999998 456778899999999999999999999999998 43 347888899999999
Q ss_pred hhhhhHHHHHHHHHhhCC-----------------------------CCchhHHHHHH----------------------
Q 037592 98 ALRLGKEVHCQYIRRSGC-----------------------------KDVIIESALVD---------------------- 126 (337)
Q Consensus 98 ~~~~a~~~~~~~~~~~~~-----------------------------~~~~~~~~l~~---------------------- 126 (337)
++++|...+..+...+.. ++...+..+..
T Consensus 209 ~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (615)
T TIGR00990 209 KYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDE 288 (615)
T ss_pred CHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccccc
Confidence 999998766544322110 11001111100
Q ss_pred --------HH------HhcCCHHHHHHHHhcCCC-----C-cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCC-Hh
Q 037592 127 --------LY------AKCGCVDFAHQIFLQMPV-----R-NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPD-HV 185 (337)
Q Consensus 127 --------~~------~~~g~~~~A~~~~~~~~~-----~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~ 185 (337)
.. ...+++++|.+.|++... | ....|+.+...+...|++++|+..|++..+. .|+ ..
T Consensus 289 ~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~ 366 (615)
T TIGR00990 289 ETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQ 366 (615)
T ss_pred ccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHH
Confidence 00 113578899999987762 2 3457888889999999999999999999885 454 45
Q ss_pred HHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cCCC-chhHHHHHHHHHh
Q 037592 186 SFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DCRH-DSSLWEVLLGACT 263 (337)
Q Consensus 186 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~ 263 (337)
.|..+...+...|++++|...++.+++.. +.+..++..+...+...|++++|...|++. ...| +...+..+..++.
T Consensus 367 ~~~~la~~~~~~g~~~eA~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~ 444 (615)
T TIGR00990 367 SYIKRASMNLELGDPDKAEEDFDKALKLN--SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQY 444 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHH
Confidence 77778888899999999999999997642 455789999999999999999999999974 4445 4566777788899
Q ss_pred cCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCC
Q 037592 264 TFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGV 317 (337)
Q Consensus 264 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 317 (337)
+.|++++|+..++++++..|+++..+..++.++...|++++|+..|++..+...
T Consensus 445 ~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p 498 (615)
T TIGR00990 445 KEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEK 498 (615)
T ss_pred HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999999887543
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.6e-18 Score=165.15 Aligned_cols=304 Identities=11% Similarity=0.058 Sum_probs=176.3
Q ss_pred CchhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHccc--C-ChhhHHHHHHHHHcCCChhHHHHHHHH
Q 037592 1 RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLK--K-NSVSSSALLQGYCQTGDFESVIRIFRE 77 (337)
Q Consensus 1 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 77 (337)
++++|...|+.+++.. +.+...+..+..++...|++++|++.|+++.. | +...+..+...|. .++.++|+.+++.
T Consensus 366 ~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~ 443 (1157)
T PRK11447 366 NLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKALAFIAS 443 (1157)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHHh
Confidence 4678889999998874 44566778888999999999999999999843 3 3444554544442 2344555554443
Q ss_pred Hhhc------------CcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC
Q 037592 78 MEEI------------DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP 145 (337)
Q Consensus 78 ~~~~------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 145 (337)
+... ....+..+...+...|++++|.+.++++++..+ .+..++..+...|.+.|++++|+..++++.
T Consensus 444 l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~~~~~G~~~~A~~~l~~al 522 (1157)
T PRK11447 444 LSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP-GSVWLTYRLAQDLRQAGQRSQADALMRRLA 522 (1157)
T ss_pred CCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3220 011223333444445555555555555554433 233444445555555555555555555443
Q ss_pred --CC-cHHhHHH--------------------------------------------HHHHHHhCCCHhHHHHHHHHHHhc
Q 037592 146 --VR-NLITWNS--------------------------------------------MISGFAQNGRGEEALRIFDDMTEG 178 (337)
Q Consensus 146 --~~-~~~~~~~--------------------------------------------l~~~~~~~~~~~~a~~~~~~m~~~ 178 (337)
.| +...+.. +...+...|+.++|..+++ .
T Consensus 523 ~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~---~- 598 (1157)
T PRK11447 523 QQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR---Q- 598 (1157)
T ss_pred HcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH---h-
Confidence 11 2222222 2334445555555555544 1
Q ss_pred CCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhc-CCC-chhHHH
Q 037592 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENAD-CRH-DSSLWE 256 (337)
Q Consensus 179 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~ 256 (337)
.+++...+..+...+.+.|++++|+..|+.+++.. +.+...+..++..|...|++++|++.++.+. ..| +...+.
T Consensus 599 -~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~--P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~ 675 (1157)
T PRK11447 599 -QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE--PGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQR 675 (1157)
T ss_pred -CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHH
Confidence 23344445556666677777777777777775432 3456666777777777777777777777642 233 233445
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHhcCCCcc------chHHHHHHHHHHcCChhhHHHHHHHHHH
Q 037592 257 VLLGACTTFRNAHVAERVAKKIMELKPDCH------LSYVLLDNVYRAVGRWNDAFKIRTLMKY 314 (337)
Q Consensus 257 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 314 (337)
.+..++...|++++|.++++++.+..|+++ ..+..++..+...|++++|+..|++...
T Consensus 676 ~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 676 RVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 555666677777777777777776554432 2445556667777777777777777654
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.3e-17 Score=150.36 Aligned_cols=311 Identities=10% Similarity=-0.005 Sum_probs=188.8
Q ss_pred CchhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHcc--cC-ChhhHHHHHHHHHcCCChhHHHHHHHH
Q 037592 1 RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKML--KK-NSVSSSALLQGYCQTGDFESVIRIFRE 77 (337)
Q Consensus 1 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 77 (337)
+.++|++++....... +.+...+..+...+.+.|++++|..+|++.+ .| +...+..++..+...|++++|+..+++
T Consensus 30 ~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~ 108 (765)
T PRK10049 30 QDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQ 108 (765)
T ss_pred CHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3567777887777632 4455568888888888888888888888862 23 466677788888888888888888888
Q ss_pred Hhh--cCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCC---------
Q 037592 78 MEE--IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV--------- 146 (337)
Q Consensus 78 ~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------- 146 (337)
+.+ |+...+..+..++...|+.++|...++++++..+ .+...+..+..++...|..++|++.+++...
T Consensus 109 ~l~~~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~ 187 (765)
T PRK10049 109 LVSGAPDKANLLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLE 187 (765)
T ss_pred HHHhCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHH
Confidence 877 4433377777788888888888888888888765 4455555566666666665555544442221
Q ss_pred ------------------------------------------CcHH-hH----HHHHHHHHhCCCHhHHHHHHHHHHhcC
Q 037592 147 ------------------------------------------RNLI-TW----NSMISGFAQNGRGEEALRIFDDMTEGG 179 (337)
Q Consensus 147 ------------------------------------------~~~~-~~----~~l~~~~~~~~~~~~a~~~~~~m~~~~ 179 (337)
|+.. .+ ...+..+...|++++|+..|+++.+.+
T Consensus 188 ~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~ 267 (765)
T PRK10049 188 ADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEG 267 (765)
T ss_pred HHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccC
Confidence 1000 00 000123345567777777777776654
Q ss_pred CC-CCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHhc-CCC-----
Q 037592 180 TK-PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKP--KIEHYNCMVDLLGRAGLLEEAETLIENAD-CRH----- 250 (337)
Q Consensus 180 ~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~----- 250 (337)
.+ |+.. ...+...+...|++++|+.+|+.++......+ .......+..++...|++++|..+++++. ..|
T Consensus 268 ~~~P~~a-~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~ 346 (765)
T PRK10049 268 QIIPPWA-QRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRL 346 (765)
T ss_pred CCCCHHH-HHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEee
Confidence 22 3221 12234566677777777777777653211110 12334455556666777777777666542 111
Q ss_pred --------ch---hHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHH
Q 037592 251 --------DS---SLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKY 314 (337)
Q Consensus 251 --------~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 314 (337)
+. ..+..+...+...|+.++|++.++++....|+++..+..++..+...|++++|++.+++..+
T Consensus 347 ~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~ 421 (765)
T PRK10049 347 YGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEV 421 (765)
T ss_pred cCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 11 12233444555666666666666666666666666666666666666666666666665555
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.5e-17 Score=148.38 Aligned_cols=315 Identities=10% Similarity=-0.037 Sum_probs=232.9
Q ss_pred CchhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHccc--C-ChhhHHHHHHHHHcCCChhHHHHHHHH
Q 037592 1 RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLK--K-NSVSSSALLQGYCQTGDFESVIRIFRE 77 (337)
Q Consensus 1 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 77 (337)
++++|..+++..++.. +.+...+..++..+...|++++|+..++++.. | +.. +..+..++...|+.++|+..+++
T Consensus 64 ~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~ 141 (765)
T PRK10049 64 QWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQ 141 (765)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHH
Confidence 4678999999988874 44566777888899999999999999999833 3 455 88888999999999999999999
Q ss_pred Hhh--cCcc-cHHHHHHHHHhhchh----------------------------------------------hhhHHHHHH
Q 037592 78 MEE--IDLF-SFGIVLRACAGLAAL----------------------------------------------RLGKEVHCQ 108 (337)
Q Consensus 78 ~~~--~~~~-~~~~l~~~~~~~~~~----------------------------------------------~~a~~~~~~ 108 (337)
+.+ |+.. .+..+..++...+.. ++|+..++.
T Consensus 142 al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ 221 (765)
T PRK10049 142 ALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDA 221 (765)
T ss_pred HHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHH
Confidence 988 5543 333344444433333 344555555
Q ss_pred HHHhh-CCCCch-hH----HHHHHHHHhcCCHHHHHHHHhcCCCCc---H-HhHHHHHHHHHhCCCHhHHHHHHHHHHhc
Q 037592 109 YIRRS-GCKDVI-IE----SALVDLYAKCGCVDFAHQIFLQMPVRN---L-ITWNSMISGFAQNGRGEEALRIFDDMTEG 178 (337)
Q Consensus 109 ~~~~~-~~~~~~-~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~---~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 178 (337)
+++.- ..|+.. .+ ...+..+...|++++|+..|+++...+ + .....+...|...|++++|+..|+++.+.
T Consensus 222 ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~ 301 (765)
T PRK10049 222 LEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYH 301 (765)
T ss_pred HHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc
Confidence 55431 112211 11 111334567799999999999998431 1 12233577899999999999999998765
Q ss_pred CCCC---CHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcC----------CCCC---HHHHHHHHHHHHhcCChHHHHHH
Q 037592 179 GTKP---DHVSFIGVLSACSHMGLIDRGRKHFASMTKEYR----------IKPK---IEHYNCMVDLLGRAGLLEEAETL 242 (337)
Q Consensus 179 ~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------~~~~---~~~~~~l~~~~~~~g~~~~A~~~ 242 (337)
.... .......+..++...|++++|.++++.+..... -.|+ ...+..++..+...|++++|+++
T Consensus 302 ~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~ 381 (765)
T PRK10049 302 PETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMR 381 (765)
T ss_pred CCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3221 123455566678899999999999999865321 0123 23556778889999999999999
Q ss_pred HHHh-c-CCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCC
Q 037592 243 IENA-D-CRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGV 317 (337)
Q Consensus 243 ~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 317 (337)
++++ . .+.+...+..+...+...|++++|++.++++++..|++...+..++..+...|++++|..+++++.+...
T Consensus 382 l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~P 458 (765)
T PRK10049 382 ARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREP 458 (765)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 9985 3 3345667788888999999999999999999999999999999999999999999999999999987543
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1e-15 Score=142.03 Aligned_cols=305 Identities=10% Similarity=-0.020 Sum_probs=223.4
Q ss_pred hhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHccc-C-----ChhhHHHHHHHHHcCCC---hhHHHH
Q 037592 3 KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLK-K-----NSVSSSALLQGYCQTGD---FESVIR 73 (337)
Q Consensus 3 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~-----~~~~~~~l~~~~~~~g~---~~~A~~ 73 (337)
.++...+..|.+.. +-+....-.+.....+.|+.++|.++|++... + +...-.-++..|.+.+. ..+++.
T Consensus 359 ~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 437 (987)
T PRK09782 359 AEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAI 437 (987)
T ss_pred hHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHH
Confidence 45566666666652 33566666666777889999999999998844 2 22234466777777765 333333
Q ss_pred H----------------------HHHHhh-----c---CcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHH
Q 037592 74 I----------------------FREMEE-----I---DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESA 123 (337)
Q Consensus 74 ~----------------------~~~~~~-----~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 123 (337)
+ ++.... | +...|..+..++.. ++.++|...+.+..... |+......
T Consensus 438 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~ 514 (987)
T PRK09782 438 LSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRA 514 (987)
T ss_pred hccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHH
Confidence 3 222222 2 34456667766665 78888999888887764 44444444
Q ss_pred HHHHHHhcCCHHHHHHHHhcCC--CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCH-hHHHHHHHHHhhcCch
Q 037592 124 LVDLYAKCGCVDFAHQIFLQMP--VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDH-VSFIGVLSACSHMGLI 200 (337)
Q Consensus 124 l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~ 200 (337)
+...+...|++++|...|+++. .|+...+..+..++.+.|++++|...+++..+.. |+. ..+..+.......|++
T Consensus 515 lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~ 592 (987)
T PRK09782 515 VAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQP 592 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCH
Confidence 4555578999999999998776 3455566777888889999999999999988754 333 2333333444456999
Q ss_pred hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cCCC-chhHHHHHHHHHhcCCChhHHHHHHHHH
Q 037592 201 DRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DCRH-DSSLWEVLLGACTTFRNAHVAERVAKKI 278 (337)
Q Consensus 201 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 278 (337)
++|...++++++. .|+...+..+..++.+.|++++|+..+++. ...| +...++.+..++...|++++|+..++++
T Consensus 593 ~eAl~~~~~AL~l---~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~A 669 (987)
T PRK09782 593 ELALNDLTRSLNI---APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERA 669 (987)
T ss_pred HHHHHHHHHHHHh---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999999743 567888899999999999999999999874 4445 4455667777899999999999999999
Q ss_pred HhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhC
Q 037592 279 MELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSG 316 (337)
Q Consensus 279 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 316 (337)
.+..|+++..+..++.++...|++++|...+++..+..
T Consensus 670 L~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 670 HKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999887654
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.4e-19 Score=144.45 Aligned_cols=252 Identities=15% Similarity=0.168 Sum_probs=111.4
Q ss_pred HHHHHcCCChhHHHHHHHHHh-h---c-CcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCC
Q 037592 59 LQGYCQTGDFESVIRIFREME-E---I-DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGC 133 (337)
Q Consensus 59 ~~~~~~~g~~~~A~~~~~~~~-~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 133 (337)
...+.+.|++++|++++++.. . | |...|..+...+...++++.|...++++...+. .+...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccccc
Confidence 445556666666666664322 1 2 223344444555666777777777777777654 356667777776 68899
Q ss_pred HHHHHHHHhcCC--CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcC-CCCCHhHHHHHHHHHhhcCchhhHHHHHHHH
Q 037592 134 VDFAHQIFLQMP--VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG-TKPDHVSFIGVLSACSHMGLIDRGRKHFASM 210 (337)
Q Consensus 134 ~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 210 (337)
+++|.+++++.- .+++..+..++..+...++++++.++++.+.... .+++...|..+...+.+.|+.++|.+.++++
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999998887764 4566777788888999999999999999977543 3456667777888889999999999999999
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhc--CCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccch
Q 037592 211 TKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENAD--CRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLS 288 (337)
Q Consensus 211 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 288 (337)
++.. +.|......++..+...|+.+++.++++... .+.++..|..+..++...|++++|+..+++.....|+++..
T Consensus 173 l~~~--P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~ 250 (280)
T PF13429_consen 173 LELD--PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLW 250 (280)
T ss_dssp HHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHH
T ss_pred HHcC--CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccc
Confidence 8653 4457888899999999999999888887642 24456678888999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHH
Q 037592 289 YVLLDNVYRAVGRWNDAFKIRTLMKY 314 (337)
Q Consensus 289 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 314 (337)
...++.++...|+.++|.++.++..+
T Consensus 251 ~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 251 LLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccc
Confidence 99999999999999999999877643
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.1e-15 Score=133.79 Aligned_cols=322 Identities=14% Similarity=0.134 Sum_probs=244.4
Q ss_pred CchhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHc---ccCChhhHHHHHHHHHcCCChhHHHHHHHH
Q 037592 1 RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKM---LKKNSVSSSALLQGYCQTGDFESVIRIFRE 77 (337)
Q Consensus 1 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 77 (337)
++++|..++.++++.. +.....|.+|...|-..|+.+++...+--+ .+.|...|-.+.....+.|++++|.-+|.+
T Consensus 154 ~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~r 232 (895)
T KOG2076|consen 154 DLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSR 232 (895)
T ss_pred CHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 5789999999999885 557788999999999999999998877555 344778899999999999999999999999
Q ss_pred Hhh---cCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhH----HHHHHHHHhcCCHHHHHHHHhcCCC----
Q 037592 78 MEE---IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE----SALVDLYAKCGCVDFAHQIFLQMPV---- 146 (337)
Q Consensus 78 ~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~---- 146 (337)
+.+ ++...+-.-...|-+.|+...|...|.++....++.+..-+ ...++.+...++-+.|.+.++....
T Consensus 233 AI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~ 312 (895)
T KOG2076|consen 233 AIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKD 312 (895)
T ss_pred HHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccc
Confidence 998 33334445567788999999999999999998764343322 2345667777888889988887763
Q ss_pred -CcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcC---------------------------CCCCHhHHHHHHHHHhhcC
Q 037592 147 -RNLITWNSMISGFAQNGRGEEALRIFDDMTEGG---------------------------TKPDHVSFIGVLSACSHMG 198 (337)
Q Consensus 147 -~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~---------------------------~~p~~~~~~~l~~~~~~~~ 198 (337)
-+...++.++..|.+...++.|......+.... ..++...+. ++-++....
T Consensus 313 ~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~r-l~icL~~L~ 391 (895)
T KOG2076|consen 313 EASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIR-LMICLVHLK 391 (895)
T ss_pred cccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHh-Hhhhhhccc
Confidence 244578889999999999999999888776611 122222212 222334444
Q ss_pred chhhHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHhcCC---CchhHHHHHHHHHhcCCChhHHHH
Q 037592 199 LIDRGRKHFASMTKEYRI--KPKIEHYNCMVDLLGRAGLLEEAETLIENADCR---HDSSLWEVLLGACTTFRNAHVAER 273 (337)
Q Consensus 199 ~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~ 273 (337)
..+....+.....+. .+ .-+...|.-+..+|...|++.+|+++|..+... .+...|-.+..+|...|.++.|..
T Consensus 392 ~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e 470 (895)
T KOG2076|consen 392 ERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIE 470 (895)
T ss_pred ccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHH
Confidence 444444444444333 43 334678899999999999999999999987433 245678999999999999999999
Q ss_pred HHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCCccCCCCcc
Q 037592 274 VAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSW 325 (337)
Q Consensus 274 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 325 (337)
.|++++...|++...-..|...+.+.|+.++|.++++.|..-+....++..|
T Consensus 471 ~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~ 522 (895)
T KOG2076|consen 471 FYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAW 522 (895)
T ss_pred HHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccc
Confidence 9999999999999999999999999999999999999887333222244444
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.8e-15 Score=140.56 Aligned_cols=310 Identities=9% Similarity=-0.009 Sum_probs=238.5
Q ss_pred chhhHHHHHHHHhc-C-CCCchHhHHHHHHHHHhcCC---hHHHHHH-------------------------HHHcc---
Q 037592 2 LKQGKEVHAKVITL-G-LCGNVVVESSLVDMYGKCGL---VDESHRV-------------------------FDKML--- 48 (337)
Q Consensus 2 ~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~---~~~A~~~-------------------------~~~~~--- 48 (337)
.++|.++|+..... + -.++......|+..|.+.+. ...+..+ +....
T Consensus 392 ~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~ 471 (987)
T PRK09782 392 SREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDM 471 (987)
T ss_pred HHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccC
Confidence 46788888887763 1 23344556678888888766 3333222 11222
Q ss_pred cC--ChhhHHHHHHHHHcCCChhHHHHHHHHHhh--cCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHH
Q 037592 49 KK--NSVSSSALLQGYCQTGDFESVIRIFREMEE--IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESAL 124 (337)
Q Consensus 49 ~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 124 (337)
.+ +...|..+..++.. +++++|+..+.+... |+......+...+...|++++|...++++... +|+...+..+
T Consensus 472 p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~l 548 (987)
T PRK09782 472 SPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAA 548 (987)
T ss_pred CCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHH
Confidence 12 55678888888876 899999998888877 76544334455557899999999999998665 3445556777
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCc---HHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchh
Q 037592 125 VDLYAKCGCVDFAHQIFLQMPVRN---LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLID 201 (337)
Q Consensus 125 ~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 201 (337)
..++.+.|+.++|...+++....+ ...+..+.......|++++|...+++..+. .|+...+..+...+.+.|+.+
T Consensus 549 a~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~d 626 (987)
T PRK09782 549 ANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVP 626 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHH
Confidence 888999999999999999887432 233333444455669999999999999984 567788888889999999999
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cCCC-chhHHHHHHHHHhcCCChhHHHHHHHHHH
Q 037592 202 RGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DCRH-DSSLWEVLLGACTTFRNAHVAERVAKKIM 279 (337)
Q Consensus 202 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 279 (337)
+|...+++++... +.+...++.+..++...|++++|+..+++. ...| +...+..+..++...|++++|+..++++.
T Consensus 627 eA~~~l~~AL~l~--Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al 704 (987)
T PRK09782 627 AAVSDLRAALELE--PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVI 704 (987)
T ss_pred HHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999997542 455778888999999999999999999974 4444 56678888899999999999999999999
Q ss_pred hcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCCc
Q 037592 280 ELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVK 318 (337)
Q Consensus 280 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 318 (337)
++.|++...............+++.|.+.+++-...++.
T Consensus 705 ~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~ 743 (987)
T PRK09782 705 DDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFD 743 (987)
T ss_pred hcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 999998888888899999989999999988876665443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.1e-14 Score=130.97 Aligned_cols=158 Identities=11% Similarity=0.059 Sum_probs=107.2
Q ss_pred HHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcC----CCCCHHHHHHHHHHHHh
Q 037592 157 SGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYR----IKPKIEHYNCMVDLLGR 232 (337)
Q Consensus 157 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~ 232 (337)
-++...|++.++++.|+.+...|.+....+-..+..+|...+++++|..+++.+....+ .+++......|.-+|..
T Consensus 300 ~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld 379 (822)
T PRK14574 300 GALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNE 379 (822)
T ss_pred HHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHh
Confidence 34556677778888888877766553444666777888888888888888887755432 12233445667777888
Q ss_pred cCChHHHHHHHHHhcC-C-------------Cch--hH-HHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHH
Q 037592 233 AGLLEEAETLIENADC-R-------------HDS--SL-WEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNV 295 (337)
Q Consensus 233 ~g~~~~A~~~~~~~~~-~-------------~~~--~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 295 (337)
.+++++|..+++++.. . |+. .. ...++..+.-.|+..+|++.++++....|.+......+...
T Consensus 380 ~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v 459 (822)
T PRK14574 380 SEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASI 459 (822)
T ss_pred cccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 8888888888776521 1 111 11 22344557777888888888888877888877777788888
Q ss_pred HHHcCChhhHHHHHHHHHH
Q 037592 296 YRAVGRWNDAFKIRTLMKY 314 (337)
Q Consensus 296 ~~~~g~~~~A~~~~~~m~~ 314 (337)
+...|.+.+|.+.++....
T Consensus 460 ~~~Rg~p~~A~~~~k~a~~ 478 (822)
T PRK14574 460 YLARDLPRKAEQELKAVES 478 (822)
T ss_pred HHhcCCHHHHHHHHHHHhh
Confidence 8888888888887755444
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.1e-15 Score=127.11 Aligned_cols=274 Identities=11% Similarity=0.065 Sum_probs=211.1
Q ss_pred hcCChHHHHHHHHHcccC--ChhhHH-HHHHHHHcCCChhHHHHHHHHHhh--cCcccHH--HHHHHHHhhchhhhhHHH
Q 037592 33 KCGLVDESHRVFDKMLKK--NSVSSS-ALLQGYCQTGDFESVIRIFREMEE--IDLFSFG--IVLRACAGLAALRLGKEV 105 (337)
Q Consensus 33 ~~~~~~~A~~~~~~~~~~--~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~--~l~~~~~~~~~~~~a~~~ 105 (337)
-.|+++.|.+.+...... ++..+. ....+..+.|+++.|.+++.++.+ |+..... .....+...|+++.|...
T Consensus 96 ~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~ 175 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHG 175 (398)
T ss_pred hCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 369999999998876443 233333 334556899999999999999988 5554333 336688899999999999
Q ss_pred HHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCC---cH--------HhHHHHHHHHHhCCCHhHHHHHHHH
Q 037592 106 HCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVR---NL--------ITWNSMISGFAQNGRGEEALRIFDD 174 (337)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~--------~~~~~l~~~~~~~~~~~~a~~~~~~ 174 (337)
++++.+..+ .+..+...+...|.+.|+|++|.+++..+.+. +. .+|..++.......+.+...++++.
T Consensus 176 l~~~~~~~P-~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~ 254 (398)
T PRK10747 176 VDKLLEVAP-RHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKN 254 (398)
T ss_pred HHHHHhcCC-CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 999999875 67888889999999999999999999888722 11 1333444444445566666777776
Q ss_pred HHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cCCCch-
Q 037592 175 MTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DCRHDS- 252 (337)
Q Consensus 175 m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~- 252 (337)
+-+. .+.+......+...+...|+.++|.++++..++. +|++... ++.+....++.+++.+..++. ...|+.
T Consensus 255 lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~ 328 (398)
T PRK10747 255 QSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTP 328 (398)
T ss_pred CCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCH
Confidence 6443 3446677888889999999999999999998753 5665332 233444569999999999874 445544
Q ss_pred hHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHH
Q 037592 253 SLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKY 314 (337)
Q Consensus 253 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 314 (337)
.....+...|.+.+++++|.+.|+.+.+..|+ ...+..+..++.+.|+.++|.+++++-..
T Consensus 329 ~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~-~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 329 LLWSTLGQLLMKHGEWQEASLAFRAALKQRPD-AYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45667778899999999999999999999999 57788999999999999999999997654
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.1e-14 Score=121.74 Aligned_cols=273 Identities=11% Similarity=0.016 Sum_probs=210.4
Q ss_pred CchhhHHHHHHHHhcCCCCchHhHHHH-HHHHHhcCChHHHHHHHHHccc--CChhhHH--HHHHHHHcCCChhHHHHHH
Q 037592 1 RLKQGKEVHAKVITLGLCGNVVVESSL-VDMYGKCGLVDESHRVFDKMLK--KNSVSSS--ALLQGYCQTGDFESVIRIF 75 (337)
Q Consensus 1 ~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~--~l~~~~~~~g~~~~A~~~~ 75 (337)
|+++|.+.+....+.. +++..+..+ .....+.|+++.|...|.++.+ |+..... .....+...|++++|...+
T Consensus 99 d~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l 176 (398)
T PRK10747 99 DYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGV 176 (398)
T ss_pred CHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4566776666655442 233333333 4555889999999999999844 3332222 3467889999999999999
Q ss_pred HHHhh--cC-cccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCc-------hhHHHHHHHHHhcCCHHHHHHHHhcCC
Q 037592 76 REMEE--ID-LFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV-------IIESALVDLYAKCGCVDFAHQIFLQMP 145 (337)
Q Consensus 76 ~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~ 145 (337)
+++.+ |+ ......+...+.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++++.+.
T Consensus 177 ~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp 256 (398)
T PRK10747 177 DKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQS 256 (398)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCC
Confidence 99998 54 456778889999999999999999999998764322 133334444445556677788888876
Q ss_pred ---CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHH
Q 037592 146 ---VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEH 222 (337)
Q Consensus 146 ---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 222 (337)
+.++.....+...+...|+.++|..++++..+. +|+.... ++.+....++.+++.+..+..++.+ +-|+..
T Consensus 257 ~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~--P~~~~l 330 (398)
T PRK10747 257 RKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH--GDTPLL 330 (398)
T ss_pred HHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC--CCCHHH
Confidence 457788899999999999999999999999884 4444322 3344456699999999999997653 556778
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHh-cCCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhc
Q 037592 223 YNCMVDLLGRAGLLEEAETLIENA-DCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMEL 281 (337)
Q Consensus 223 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 281 (337)
+..+...+.+.|++++|.+.|++. ...|+...+..+...+.+.|+.++|.+++++...+
T Consensus 331 ~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 331 WSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 889999999999999999999984 67899999999999999999999999999998773
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.4e-15 Score=114.48 Aligned_cols=286 Identities=12% Similarity=0.094 Sum_probs=224.5
Q ss_pred HhcCChHHHHHHHHHcccCChhh---HHHHHHHHHcCCChhHHHHHHHHHhh-cCcc------cHHHHHHHHHhhchhhh
Q 037592 32 GKCGLVDESHRVFDKMLKKNSVS---SSALLQGYCQTGDFESVIRIFREMEE-IDLF------SFGIVLRACAGLAALRL 101 (337)
Q Consensus 32 ~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~------~~~~l~~~~~~~~~~~~ 101 (337)
.-+++.++|++.|-+|.+-|+.+ .-+|.+.|-+.|..++|+++.+.+.+ ||.. +...|..-|...|-++.
T Consensus 46 LLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 46 LLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred HhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 34578999999999997666555 45788999999999999999999988 6653 34556777889999999
Q ss_pred hHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcH--------HhHHHHHHHHHhCCCHhHHHHHHH
Q 037592 102 GKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNL--------ITWNSMISGFAQNGRGEEALRIFD 173 (337)
Q Consensus 102 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~~~a~~~~~ 173 (337)
|+.+|..+.+.+. --......|+..|-...+|++|+++-+++.+.+. ..|.-|...+....+.+.|..++.
T Consensus 126 AE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 126 AEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 9999999988654 4466777899999999999999999887763322 245556666777899999999999
Q ss_pred HHHhcCCCCCHhHHHH-HHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cCCCc
Q 037592 174 DMTEGGTKPDHVSFIG-VLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DCRHD 251 (337)
Q Consensus 174 ~m~~~~~~p~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~ 251 (337)
+..+. .|+.+--++ +.......|+++.|.+.++.+.+. +..--+.+...|..+|...|+.++...++.++ ...+.
T Consensus 205 kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g 281 (389)
T COG2956 205 KALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG 281 (389)
T ss_pred HHHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence 99885 444444443 447788999999999999999654 33333677788999999999999999999874 55666
Q ss_pred hhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHH---cCChhhHHHHHHHHHHhCCccCCC
Q 037592 252 SSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRA---VGRWNDAFKIRTLMKYSGVKKMPG 322 (337)
Q Consensus 252 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~ 322 (337)
...-..+...-....-.+.|...+.+-+...|+ ...+..++..... .|.+.+.+..++.|....++..|.
T Consensus 282 ~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt-~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~ 354 (389)
T COG2956 282 ADAELMLADLIELQEGIDAAQAYLTRQLRRKPT-MRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPR 354 (389)
T ss_pred ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCc-HHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCC
Confidence 666666666666777788899999888899999 6788888776543 456888889999998877766555
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.73 E-value=9.6e-16 Score=130.08 Aligned_cols=274 Identities=15% Similarity=0.095 Sum_probs=216.3
Q ss_pred CChHHHHHHHHHcccC--Chh-hHHHHHHHHHcCCChhHHHHHHHHHhh------cCcccHHHHHHHHHhhchhhhhHHH
Q 037592 35 GLVDESHRVFDKMLKK--NSV-SSSALLQGYCQTGDFESVIRIFREMEE------IDLFSFGIVLRACAGLAALRLGKEV 105 (337)
Q Consensus 35 ~~~~~A~~~~~~~~~~--~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~ 105 (337)
=+..+|...|..++.. |.. ....+..+|...+++++|.++|+.+.. .+...|++.+..+-+. -+..+
T Consensus 333 y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 3678899999996433 433 345677899999999999999999988 5667888887765322 22333
Q ss_pred H-HHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCC---cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCC
Q 037592 106 H-CQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVR---NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181 (337)
Q Consensus 106 ~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 181 (337)
+ +.+.+.. +..+.+|.++.++|.-+++.+.|++.|++..+. ...+|+.+..-+....++|+|...|+..+. +.
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~ 485 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VD 485 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CC
Confidence 3 3344443 367899999999999999999999999999854 457888888889999999999999999865 33
Q ss_pred CCH-hHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHh-cCCC-chhHHHH
Q 037592 182 PDH-VSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKP-KIEHYNCMVDLLGRAGLLEEAETLIENA-DCRH-DSSLWEV 257 (337)
Q Consensus 182 p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~ 257 (337)
|.. .+|..+...|.+.++++.|+-.|+.++ .+.| +......++..+.+.|+.++|++++++. ...| |+..--.
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~ 562 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH 562 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH
Confidence 322 345556678999999999999999997 4455 4566677888999999999999999984 3333 3333334
Q ss_pred HHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCCc
Q 037592 258 LLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVK 318 (337)
Q Consensus 258 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 318 (337)
-+..+...+++++|+..+++++++.|++...|..++..|.+.|+.+.|+.-|--+.+...+
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 4566788999999999999999999999999999999999999999999999887775544
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-15 Score=129.64 Aligned_cols=272 Identities=14% Similarity=0.035 Sum_probs=195.7
Q ss_pred hhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHccc--C----ChhhHHHHHHHHHcCCChhHHHHHHH
Q 037592 3 KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLK--K----NSVSSSALLQGYCQTGDFESVIRIFR 76 (337)
Q Consensus 3 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~----~~~~~~~l~~~~~~~g~~~~A~~~~~ 76 (337)
++|...|....+. +.-+..+...+..+|...+++++|.++|+.+.+ | +...|.+.+--+.+ +-++.++.
T Consensus 336 ~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~La 410 (638)
T KOG1126|consen 336 REALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYLA 410 (638)
T ss_pred HHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHHH
Confidence 5677778874443 233446667778888888888888888888732 2 56677776654322 22333332
Q ss_pred H-Hhh---cCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhH
Q 037592 77 E-MEE---IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITW 152 (337)
Q Consensus 77 ~-~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 152 (337)
+ +.. ..+.+|..+..+|..+++.+.|++.|+++++..+ ....+|+.+..=+.....+|+|...|+.....|+..|
T Consensus 411 q~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp-~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhY 489 (638)
T KOG1126|consen 411 QDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDP-RFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHY 489 (638)
T ss_pred HHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCC-ccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhh
Confidence 2 222 3456888888888888888888888888887654 4678888888888888888888888888887766655
Q ss_pred HH---HHHHHHhCCCHhHHHHHHHHHHhcCCCC-CHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 037592 153 NS---MISGFAQNGRGEEALRIFDDMTEGGTKP-DHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVD 228 (337)
Q Consensus 153 ~~---l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 228 (337)
++ +...|.+.++++.|.-.|+++.+ +.| +.+....+...+.+.|+.|+|+++++++..-. +.|+......+.
T Consensus 490 nAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld--~kn~l~~~~~~~ 565 (638)
T KOG1126|consen 490 NAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD--PKNPLCKYHRAS 565 (638)
T ss_pred HHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC--CCCchhHHHHHH
Confidence 54 56778888888888888888877 444 44445555667778888888888888886432 445556666677
Q ss_pred HHHhcCChHHHHHHHHHhc-CCCc-hhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCC
Q 037592 229 LLGRAGLLEEAETLIENAD-CRHD-SSLWEVLLGACTTFRNAHVAERVAKKIMELKPD 284 (337)
Q Consensus 229 ~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 284 (337)
.+...+++++|+..++++. ..|+ ...+..+...|.+.|+.+.|+.-|.-+.+++|.
T Consensus 566 il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 566 ILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 7888888888888888864 3444 444566667888888888888888888888887
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.5e-14 Score=119.68 Aligned_cols=278 Identities=12% Similarity=0.001 Sum_probs=203.4
Q ss_pred HhcCChHHHHHHHHHcccC--C-hhhHHHHHHHHHcCCChhHHHHHHHHHhh--cCcc--cHHHHHHHHHhhchhhhhHH
Q 037592 32 GKCGLVDESHRVFDKMLKK--N-SVSSSALLQGYCQTGDFESVIRIFREMEE--IDLF--SFGIVLRACAGLAALRLGKE 104 (337)
Q Consensus 32 ~~~~~~~~A~~~~~~~~~~--~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~--~~~~l~~~~~~~~~~~~a~~ 104 (337)
...|+++.|.+.+.+..+. + ...+-....++.+.|+++.|.+++++..+ |+.. ........+...|+++.|..
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 4689999999999887443 3 23344556778889999999999999877 6654 23335778889999999999
Q ss_pred HHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCC---CcHHhHH----HHHHHHHhCCCHhHHHHHHHHHHh
Q 037592 105 VHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV---RNLITWN----SMISGFAQNGRGEEALRIFDDMTE 177 (337)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~----~l~~~~~~~~~~~~a~~~~~~m~~ 177 (337)
.++.+.+..+ .+..++..+...+...|++++|.+.+..+.+ .+...+. .........+..++..+.+..+.+
T Consensus 175 ~l~~l~~~~P-~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 175 GVDKLLEMAP-RHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHHhCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9999999875 5677888999999999999999999988872 3333332 111222333444444556666655
Q ss_pred cCCC---CCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHH---HHHHHHHHHhcCChHHHHHHHHHh-cCCC
Q 037592 178 GGTK---PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEH---YNCMVDLLGRAGLLEEAETLIENA-DCRH 250 (337)
Q Consensus 178 ~~~~---p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~-~~~~ 250 (337)
.... .+...+..+...+...|+.++|.+++++.++. .|+... ...........++.+.+.+.+++. ...|
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p 330 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVD 330 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCC
Confidence 4221 36777888888999999999999999999764 344321 111222233457888888888763 4444
Q ss_pred ch---hHHHHHHHHHhcCCChhHHHHHHH--HHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHH
Q 037592 251 DS---SLWEVLLGACTTFRNAHVAERVAK--KIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKY 314 (337)
Q Consensus 251 ~~---~~~~~l~~~~~~~g~~~~a~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 314 (337)
+. ....++...+.+.|++++|.+.|+ .+.+..|+ +..+..++..+.+.|+.++|.+++++-..
T Consensus 331 ~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~-~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 331 DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLD-ANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44 445677888999999999999999 46668898 56677999999999999999999998644
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.5e-14 Score=120.03 Aligned_cols=272 Identities=11% Similarity=-0.008 Sum_probs=125.5
Q ss_pred chhhHHHHHHHHhcCCCCchHh-HHHHHHHHHhcCChHHHHHHHHHcc--cCCh--hhHHHHHHHHHcCCChhHHHHHHH
Q 037592 2 LKQGKEVHAKVITLGLCGNVVV-ESSLVDMYGKCGLVDESHRVFDKML--KKNS--VSSSALLQGYCQTGDFESVIRIFR 76 (337)
Q Consensus 2 ~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~--~~~~~l~~~~~~~g~~~~A~~~~~ 76 (337)
++.|.+.+....+. .|+... +-....+..+.|+++.|.+.+++.. .|+. ...-.....+...|+++.|...++
T Consensus 100 ~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~ 177 (409)
T TIGR00540 100 YAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVD 177 (409)
T ss_pred HHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 44555555544443 233222 2223344555566666666665541 1222 122223455555566666666666
Q ss_pred HHhh--cC-cccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHH-HHHHHH---Hhc----CCHHHHHHHHhcCC
Q 037592 77 EMEE--ID-LFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIES-ALVDLY---AKC----GCVDFAHQIFLQMP 145 (337)
Q Consensus 77 ~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~---~~~----g~~~~A~~~~~~~~ 145 (337)
.+.+ |+ ...+..+...+.+.|+++.|.+.+..+.+.+.. +...+. .-..++ ... ...+...+.++...
T Consensus 178 ~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p 256 (409)
T TIGR00540 178 KLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQP 256 (409)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCC
Confidence 5555 32 234445555555666666666666665555432 222111 001111 111 11223333333333
Q ss_pred C---CcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhH--H-HHHHHHHhhcCchhhHHHHHHHHHHhcCCCCC
Q 037592 146 V---RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVS--F-IGVLSACSHMGLIDRGRKHFASMTKEYRIKPK 219 (337)
Q Consensus 146 ~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 219 (337)
. .+...+..++..+...|+.++|.+++++..+.. |+... + ..........++.+.+.+.++..++.. +-|
T Consensus 257 ~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~--p~~ 332 (409)
T TIGR00540 257 RHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV--DDK 332 (409)
T ss_pred HHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC--CCC
Confidence 1 245555555555666666666666666555532 22221 0 111111223345555555555554432 222
Q ss_pred H--HHHHHHHHHHHhcCChHHHHHHHHH---hcCCCchhHHHHHHHHHhcCCChhHHHHHHHHHHh
Q 037592 220 I--EHYNCMVDLLGRAGLLEEAETLIEN---ADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME 280 (337)
Q Consensus 220 ~--~~~~~l~~~~~~~g~~~~A~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 280 (337)
+ ....++...+.+.|++++|.+.|+. ....|+...+..+...+.+.|+.++|.+++++...
T Consensus 333 ~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 333 PKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 3444555555566666666666652 23455555555555556666666666666655543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.1e-14 Score=109.09 Aligned_cols=276 Identities=10% Similarity=0.093 Sum_probs=215.7
Q ss_pred CchhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHccc-CCh------hhHHHHHHHHHcCCChhHHHH
Q 037592 1 RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLK-KNS------VSSSALLQGYCQTGDFESVIR 73 (337)
Q Consensus 1 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~------~~~~~l~~~~~~~g~~~~A~~ 73 (337)
+.++|.++|-+|.+.. +.+..+.-+|.+.|.+.|..+.|+++...+.+ ||. .....|..-|...|-++.|.+
T Consensus 50 Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~ 128 (389)
T COG2956 50 QPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAED 128 (389)
T ss_pred CcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 3578999999999864 44667788899999999999999999998844 432 234567788999999999999
Q ss_pred HHHHHhh-cC--cccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCC----chhHHHHHHHHHhcCCHHHHHHHHhcCCC
Q 037592 74 IFREMEE-ID--LFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD----VIIESALVDLYAKCGCVDFAHQIFLQMPV 146 (337)
Q Consensus 74 ~~~~~~~-~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 146 (337)
+|..+.+ |. ..+...|+..|-+..+|++|+++-+++.+.+..+. ...|.-|...+....++++|..++.+..+
T Consensus 129 ~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlq 208 (389)
T COG2956 129 IFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQ 208 (389)
T ss_pred HHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Confidence 9999987 32 34678899999999999999999999999887654 34455667777778899999999998874
Q ss_pred C---cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHH
Q 037592 147 R---NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY 223 (337)
Q Consensus 147 ~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 223 (337)
. .+.+--.+...+...|++++|.+.++...+.+...-..+...+..+|...|+.++....+.++.+. .++...-
T Consensus 209 a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~ 285 (389)
T COG2956 209 ADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET---NTGADAE 285 (389)
T ss_pred hCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---cCCccHH
Confidence 3 344555677889999999999999999999766655667788889999999999999999998654 4555555
Q ss_pred HHHHHHHHhcCChHHHHHH-HHHhcCCCchhHHHHHHHHHh---cCCChhHHHHHHHHHHh
Q 037592 224 NCMVDLLGRAGLLEEAETL-IENADCRHDSSLWEVLLGACT---TFRNAHVAERVAKKIME 280 (337)
Q Consensus 224 ~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~l~~~~~---~~g~~~~a~~~~~~~~~ 280 (337)
..+.+......-.+.|... .+.+..+|+...+..++..-. .-|...+-...++.|..
T Consensus 286 l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 286 LMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred HHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 5555555555555666555 456889999999999997643 33445666666777664
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.3e-16 Score=130.42 Aligned_cols=254 Identities=15% Similarity=0.154 Sum_probs=107.9
Q ss_pred CchHhHHHHHHHHHhcCChHHHHHHHHHc---c--cCChhhHHHHHHHHHcCCChhHHHHHHHHHhh---cCcccHHHHH
Q 037592 19 GNVVVESSLVDMYGKCGLVDESHRVFDKM---L--KKNSVSSSALLQGYCQTGDFESVIRIFREMEE---IDLFSFGIVL 90 (337)
Q Consensus 19 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~ 90 (337)
|+...+ .+...+.+.|++++|.++++.. . ..|...|..+...+...++++.|.+.++++.. .+...+..++
T Consensus 7 ~~~~~l-~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~ 85 (280)
T PF13429_consen 7 PSEEAL-RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLI 85 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 333334 5688899999999999999653 2 22566677788888899999999999999988 2234566666
Q ss_pred HHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC-----CCcHHhHHHHHHHHHhCCCH
Q 037592 91 RACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP-----VRNLITWNSMISGFAQNGRG 165 (337)
Q Consensus 91 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~ 165 (337)
.. ...+++++|..++.+..+.. ++...+..++..+.+.++++++.++++++. +.+...|..+...+.+.|+.
T Consensus 86 ~l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~ 162 (280)
T PF13429_consen 86 QL-LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDP 162 (280)
T ss_dssp -----------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHH
T ss_pred cc-cccccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCH
Confidence 66 78999999999998876653 566777888899999999999999998854 34677888999999999999
Q ss_pred hHHHHHHHHHHhcCCCC-CHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 037592 166 EEALRIFDDMTEGGTKP-DHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIE 244 (337)
Q Consensus 166 ~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 244 (337)
++|+..+++..+. .| +......++..+...|+.+++..+++...+.. +.++..+..+..+|...|+.++|...|+
T Consensus 163 ~~A~~~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~lg~~~~Al~~~~ 238 (280)
T PF13429_consen 163 DKALRDYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA--PDDPDLWDALAAAYLQLGRYEEALEYLE 238 (280)
T ss_dssp HHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--cCHHHHHHHHHHHhcccccccccccccc
Confidence 9999999999985 45 46677788889999999999999998885543 5666788899999999999999999999
Q ss_pred Hh-cCCC-chhHHHHHHHHHhcCCChhHHHHHHHHHHh
Q 037592 245 NA-DCRH-DSSLWEVLLGACTTFRNAHVAERVAKKIME 280 (337)
Q Consensus 245 ~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 280 (337)
+. ...| |+.....+..++...|+.++|.++.+++.+
T Consensus 239 ~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 239 KALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccccccccc
Confidence 85 3344 677777888999999999999999988764
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.5e-13 Score=121.33 Aligned_cols=191 Identities=13% Similarity=0.062 Sum_probs=149.9
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCC----cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCC-----CCCHhHHHHHHHHHh
Q 037592 125 VDLYAKCGCVDFAHQIFLQMPVR----NLITWNSMISGFAQNGRGEEALRIFDDMTEGGT-----KPDHVSFIGVLSACS 195 (337)
Q Consensus 125 ~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-----~p~~~~~~~l~~~~~ 195 (337)
+-++...|++.++++.|+.+..+ ...+-..+..+|...+++++|..+|+++..... +++......|..++.
T Consensus 299 l~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~l 378 (822)
T PRK14574 299 LGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLN 378 (822)
T ss_pred HHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHH
Confidence 34556667777777777777722 234556788999999999999999999976531 223333567889999
Q ss_pred hcCchhhHHHHHHHHHHhcC----------CCCC---HHHHHHHHHHHHhcCChHHHHHHHHHhc--CCCchhHHHHHHH
Q 037592 196 HMGLIDRGRKHFASMTKEYR----------IKPK---IEHYNCMVDLLGRAGLLEEAETLIENAD--CRHDSSLWEVLLG 260 (337)
Q Consensus 196 ~~~~~~~a~~~~~~~~~~~~----------~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~ 260 (337)
..+++++|..+++.+.+... -.|+ ...+..++..+...|++.+|++.++++- .+-|......+..
T Consensus 379 d~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~ 458 (822)
T PRK14574 379 ESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALAS 458 (822)
T ss_pred hcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 99999999999999954211 0122 2445567788899999999999999862 3446777788889
Q ss_pred HHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHh
Q 037592 261 ACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYS 315 (337)
Q Consensus 261 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 315 (337)
.+...|.+..|+..++.+..+.|++..+....+.++...|+|++|..+.+...+.
T Consensus 459 v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 459 IYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999888776553
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.1e-12 Score=111.50 Aligned_cols=318 Identities=10% Similarity=0.044 Sum_probs=201.9
Q ss_pred HHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHcc---cCChhhHHHHHHHHHcCCChhHHHHHHHHHhh--c
Q 037592 7 EVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKML---KKNSVSSSALLQGYCQTGDFESVIRIFREMEE--I 81 (337)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~ 81 (337)
.+|.+.+.. .+-....|.....-+-..|+...|..++.++. ..+...|-.-+..-..+.++++|..+|.+... |
T Consensus 571 Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sg 649 (913)
T KOG0495|consen 571 ALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISG 649 (913)
T ss_pred HHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCC
Confidence 344444443 12233444444455555566666666666552 22445566666666666666666666666655 5
Q ss_pred CcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC--CC-cHHhHHHHHHH
Q 037592 82 DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP--VR-NLITWNSMISG 158 (337)
Q Consensus 82 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~l~~~ 158 (337)
+...|..-+...--.+..++|.+++++.++.-+ .-...|-.+...+-+.++++.|...|..-. .| .+..|-.|...
T Consensus 650 TeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp-~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakl 728 (913)
T KOG0495|consen 650 TERVWMKSANLERYLDNVEEALRLLEEALKSFP-DFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKL 728 (913)
T ss_pred cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCC-chHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHH
Confidence 555555555555555666666666666665421 234455555666666666666666665544 23 34455555555
Q ss_pred HHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHH
Q 037592 159 FAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238 (337)
Q Consensus 159 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 238 (337)
=-+.|.+-.|..++++..-.+++ +...|...|..-.+.|+.+.|..++.+++++ ++.+...|..-|....+.++-..
T Consensus 729 eEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~rkTk 805 (913)
T KOG0495|consen 729 EEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTK 805 (913)
T ss_pred HHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhccCcccchH
Confidence 55666666666666666554332 5555666666666666666666666666553 34455566666666555555555
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCCc
Q 037592 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVK 318 (337)
Q Consensus 239 A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 318 (337)
....+++... |+...-.+...+-...++++|.+.|.++...+|++..+|..+...+...|.-++-.+++..... ..
T Consensus 806 s~DALkkce~--dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~--~E 881 (913)
T KOG0495|consen 806 SIDALKKCEH--DPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCET--AE 881 (913)
T ss_pred HHHHHHhccC--CchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhc--cC
Confidence 5555555443 3333555566677788999999999999999999999999999999999999999999988776 56
Q ss_pred cCCCCcceecccccc
Q 037592 319 KMPGKSWIEANSKLN 333 (337)
Q Consensus 319 ~~~~~~~~~~~~~~~ 333 (337)
|..+..|..+.+.+.
T Consensus 882 P~hG~~W~avSK~i~ 896 (913)
T KOG0495|consen 882 PTHGELWQAVSKDIK 896 (913)
T ss_pred CCCCcHHHHHhhhHH
Confidence 778999988776553
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.4e-13 Score=111.09 Aligned_cols=294 Identities=12% Similarity=0.037 Sum_probs=202.8
Q ss_pred CCCCchHhHHHHHHHHHhcCChHHHHHHHHHcccCChhhHHHHHHHHHcCCChhHHHHHHHHHhhcCcccH---HHHHHH
Q 037592 16 GLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSF---GIVLRA 92 (337)
Q Consensus 16 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~l~~~ 92 (337)
+...|...+-.....+-+.|..+.|++.|...+..-+-.|.+-+...--.-+.+.+..+.... |....| -.+..+
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l--~~~~h~M~~~F~~~a 236 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGL--PSDMHWMKKFFLKKA 236 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcC--cccchHHHHHHHHHH
Confidence 335565555555666777888888998888775533333333222211111222221111111 110111 123345
Q ss_pred HHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCC------cHHh---------------
Q 037592 93 CAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVR------NLIT--------------- 151 (337)
Q Consensus 93 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~--------------- 151 (337)
+....+.+++..-.+.+...|++.+...-+....+.....++++|+.+|+++.+. |..+
T Consensus 237 ~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs 316 (559)
T KOG1155|consen 237 YQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLS 316 (559)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHH
Confidence 5555566677777777777776444444444555566667777777777776522 2222
Q ss_pred ----------------HHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcC
Q 037592 152 ----------------WNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYR 215 (337)
Q Consensus 152 ----------------~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 215 (337)
...+.+-|...++.++|..+|++.++.+.+ ....|+.+..-|....+...|+.-++.+++-
T Consensus 317 ~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi-- 393 (559)
T KOG1155|consen 317 YLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDI-- 393 (559)
T ss_pred HHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhc--
Confidence 233445566678899999999999985432 4456777778899999999999999999753
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cCC-CchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHH
Q 037592 216 IKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DCR-HDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLD 293 (337)
Q Consensus 216 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 293 (337)
.+.|-..|..|+++|.-.+...-|+-.|++. ..+ .|...|.+|..+|.+.++.++|++.|.++......+...+..|+
T Consensus 394 ~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~La 473 (559)
T KOG1155|consen 394 NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLA 473 (559)
T ss_pred CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHH
Confidence 2567899999999999999999999999985 344 47789999999999999999999999999986666688999999
Q ss_pred HHHHHcCChhhHHHHHHHHHH
Q 037592 294 NVYRAVGRWNDAFKIRTLMKY 314 (337)
Q Consensus 294 ~~~~~~g~~~~A~~~~~~m~~ 314 (337)
..|-+.++.++|...|++..+
T Consensus 474 kLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 474 KLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999988776
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=4e-12 Score=102.25 Aligned_cols=285 Identities=13% Similarity=0.079 Sum_probs=219.7
Q ss_pred HHHHHHH--hcCChHHHHHHHHHcccC---ChhhHHHHHHHHHcCCChhHHHHHHHHHhhc--Cc--ccHHHHHHHHHhh
Q 037592 26 SLVDMYG--KCGLVDESHRVFDKMLKK---NSVSSSALLQGYCQTGDFESVIRIFREMEEI--DL--FSFGIVLRACAGL 96 (337)
Q Consensus 26 ~l~~~~~--~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~--~~~~~l~~~~~~~ 96 (337)
.+..+.. -.|++..|++...+-.+. ....|-.-+.+..+.|+.+.+-.++.++.++ |. ...-+........
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~ 166 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNR 166 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhC
Confidence 3344443 379999999999886333 3445666678888999999999999999982 33 3445556678889
Q ss_pred chhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCC-----------cHHhHHHHHHHHHhCCCH
Q 037592 97 AALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVR-----------NLITWNSMISGFAQNGRG 165 (337)
Q Consensus 97 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~ 165 (337)
|+++.|..-..++.+.++ ..+.+......+|.+.|+|.....++.++.+. ...+|..+++-....+..
T Consensus 167 ~d~~aA~~~v~~ll~~~p-r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~ 245 (400)
T COG3071 167 RDYPAARENVDQLLEMTP-RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGS 245 (400)
T ss_pred CCchhHHHHHHHHHHhCc-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999999999887 66788888999999999999999999988732 224688888877777777
Q ss_pred hHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 037592 166 EEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIEN 245 (337)
Q Consensus 166 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 245 (337)
+.-...|+..-.+ .+-+...-.+++.-+...|+.++|.++..+.++. +..|+. .. .-...+-++.+.-.+..++
T Consensus 246 ~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L---~~-~~~~l~~~d~~~l~k~~e~ 319 (400)
T COG3071 246 EGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRL---CR-LIPRLRPGDPEPLIKAAEK 319 (400)
T ss_pred hHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhH---HH-HHhhcCCCCchHHHHHHHH
Confidence 7767777776544 3445566677788888999999999999999766 555551 11 2234456666665655554
Q ss_pred ----hcCCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCCccC
Q 037592 246 ----ADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKM 320 (337)
Q Consensus 246 ----~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 320 (337)
.+..| ..+.+|...|.+.+.+.+|...|+.+++..|+ ...|..+..++.+.|+..+|.+++++....-.+|.
T Consensus 320 ~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 320 WLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred HHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 34444 66888889999999999999999999999999 79999999999999999999999998876555543
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.9e-13 Score=115.86 Aligned_cols=230 Identities=19% Similarity=0.188 Sum_probs=176.8
Q ss_pred cHHHHHHHHHhhchhhhhHHHHHHHHHh-----hC-CCCc-hhHHHHHHHHHhcCCHHHHHHHHhcCC----------CC
Q 037592 85 SFGIVLRACAGLAALRLGKEVHCQYIRR-----SG-CKDV-IIESALVDLYAKCGCVDFAHQIFLQMP----------VR 147 (337)
Q Consensus 85 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~ 147 (337)
+...+...|...|+++.|..++++.++. |. .|.. ...+.+...|...+++++|..+|+++. .|
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 5666888999999999999999988876 11 1333 233447788999999999999998886 12
Q ss_pred -cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhc-----CCC-CCH-hHHHHHHHHHhhcCchhhHHHHHHHHHHhcC--CC
Q 037592 148 -NLITWNSMISGFAQNGRGEEALRIFDDMTEG-----GTK-PDH-VSFIGVLSACSHMGLIDRGRKHFASMTKEYR--IK 217 (337)
Q Consensus 148 -~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----~~~-p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~ 217 (337)
-..+++.|..+|.+.|++++|..++++..+- |.. |.. ..++.+...|+..+++++|..+++..++... ..
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 2357888889999999999999988876542 222 222 2455667788899999999999988765432 22
Q ss_pred CC----HHHHHHHHHHHHhcCChHHHHHHHHHh--------c-CCC-chhHHHHHHHHHhcCCChhHHHHHHHHHHh---
Q 037592 218 PK----IEHYNCMVDLLGRAGLLEEAETLIENA--------D-CRH-DSSLWEVLLGACTTFRNAHVAERVAKKIME--- 280 (337)
Q Consensus 218 ~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--- 280 (337)
++ ..+++.|...|...|++++|++++++. + ..+ ....++.+...|.+.+++..|.++|.+...
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 22 468899999999999999999999863 1 122 245677888899999999999999998876
Q ss_pred -cC---CCccchHHHHHHHHHHcCChhhHHHHHHHHHH
Q 037592 281 -LK---PDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKY 314 (337)
Q Consensus 281 -~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 314 (337)
.. |+...+|..|+.+|...|++++|.++.+....
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 33 44456899999999999999999999988763
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2e-13 Score=111.51 Aligned_cols=269 Identities=13% Similarity=0.066 Sum_probs=208.0
Q ss_pred HHHHhcCChHHHHHHHHHcccCChhh----HHHHHHH--HHcCCChhHHHHHHHHHhhcCcc---cHHHHHHHHHhhchh
Q 037592 29 DMYGKCGLVDESHRVFDKMLKKNSVS----SSALLQG--YCQTGDFESVIRIFREMEEIDLF---SFGIVLRACAGLAAL 99 (337)
Q Consensus 29 ~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~ 99 (337)
.-|.++|+++.|+++++-..+.|..+ -+.|... +..-.++..|.++-+.....|.. +...-.......|++
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcH
Confidence 45778999999999988775554332 2222222 22245677888888777663332 222223345568999
Q ss_pred hhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHH
Q 037592 100 RLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP---VRNLITWNSMISGFAQNGRGEEALRIFDDMT 176 (337)
Q Consensus 100 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 176 (337)
++|.+.|++.+...... ......+.-.+-..|++++|++.|-++. ..+......+.+.|-...+..+|++++.+..
T Consensus 507 dka~~~ykeal~ndasc-~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~ 585 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDASC-TEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQAN 585 (840)
T ss_pred HHHHHHHHHHHcCchHH-HHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc
Confidence 99999999998765422 3333345567888999999999998775 5677788888999999999999999998776
Q ss_pred hcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cCCCchhHH
Q 037592 177 EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DCRHDSSLW 255 (337)
Q Consensus 177 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~ 255 (337)
.. ++.|....+-+...|-+.|+-..|.+.+-.-.+ -++.+..+..-|...|....=+++|+.+|++. -+.|+..-|
T Consensus 586 sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kw 662 (840)
T KOG2003|consen 586 SL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKW 662 (840)
T ss_pred cc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHH
Confidence 54 455677888888999999999999988766533 45778888888899999999999999999985 478999999
Q ss_pred HHHHHH-HhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCC
Q 037592 256 EVLLGA-CTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGR 301 (337)
Q Consensus 256 ~~l~~~-~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 301 (337)
..++.. +.+.|+++.|..+|+...+..|.+..+...|++.+...|-
T Consensus 663 qlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 663 QLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 998854 6789999999999999999999999999999998887774
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.2e-13 Score=109.41 Aligned_cols=213 Identities=16% Similarity=0.115 Sum_probs=166.9
Q ss_pred hchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHHHH
Q 037592 96 LAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP---VRNLITWNSMISGFAQNGRGEEALRIF 172 (337)
Q Consensus 96 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~ 172 (337)
.|+.-.+..-++..++..+. +...|..+..+|....+.++....|++.. +.++.+|..-.+.+.-.+++++|..=|
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred cCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 45666677777777766543 33336777788888889888888888877 446778888888888889999999999
Q ss_pred HHHHhcCCCC-CHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH-hcCCC
Q 037592 173 DDMTEGGTKP-DHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIEN-ADCRH 250 (337)
Q Consensus 173 ~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~ 250 (337)
++.+.. .| +...|..+..+..+.+.+++++..|++..+ .++.-+.+|+...+.+...+++++|.+.|+. +...|
T Consensus 418 ~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 418 QKAISL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred HHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 998874 44 445666666677789999999999999965 4566788999999999999999999999986 33333
Q ss_pred c---------hhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHH
Q 037592 251 D---------SSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKY 314 (337)
Q Consensus 251 ~---------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 314 (337)
+ +..-..++. +.=.+++..|+.+++++++++|.+..+|..|+..-.+.|+.++|+++|++-..
T Consensus 494 ~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 2 111122222 22338999999999999999999999999999999999999999999998543
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.7e-12 Score=106.18 Aligned_cols=228 Identities=11% Similarity=0.079 Sum_probs=117.8
Q ss_pred HHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHcccC------ChhhHHHHHHHHHcCCChhHHHHHHHHHh---
Q 037592 9 HAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKK------NSVSSSALLQGYCQTGDFESVIRIFREME--- 79 (337)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--- 79 (337)
.+.....|++.+...-+....+.-...++++|+.+|+++.+. |..+|..++.. ++.+- .+.++.+-.
T Consensus 250 ~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~~~~s--kLs~LA~~v~~i 325 (559)
T KOG1155|consen 250 KERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--KNDKS--KLSYLAQNVSNI 325 (559)
T ss_pred HHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--HhhhH--HHHHHHHHHHHh
Confidence 333444444444443343344444555666666666665332 33444444422 22111 111111111
Q ss_pred -hcCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhHHHH
Q 037592 80 -EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP---VRNLITWNSM 155 (337)
Q Consensus 80 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l 155 (337)
+-.+.|..++.+-|+-.++.++|..+|++.++.++ .....|+.+.+-|....+...|++.++... +.|-..|-.|
T Consensus 326 dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp-~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGL 404 (559)
T KOG1155|consen 326 DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNP-KYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGL 404 (559)
T ss_pred ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCc-chhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhh
Confidence 12334455555555555666666666666666554 445556655666666666666666666554 3344556666
Q ss_pred HHHHHhCCCHhHHHHHHHHHHhcCCCC-CHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 037592 156 ISGFAQNGRGEEALRIFDDMTEGGTKP-DHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234 (337)
Q Consensus 156 ~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 234 (337)
.++|.-.+.+.=|+-+|++..+. +| |...|.++..+|.+.++.++|++.|.+++.- ...+...+..|.+.|-+.+
T Consensus 405 GQaYeim~Mh~YaLyYfqkA~~~--kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~--~dte~~~l~~LakLye~l~ 480 (559)
T KOG1155|consen 405 GQAYEIMKMHFYALYYFQKALEL--KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL--GDTEGSALVRLAKLYEELK 480 (559)
T ss_pred hHHHHHhcchHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc--cccchHHHHHHHHHHHHHH
Confidence 66666666666666666665553 33 4445555666666666666666666665432 2334455556666666666
Q ss_pred ChHHHHHHHHH
Q 037592 235 LLEEAETLIEN 245 (337)
Q Consensus 235 ~~~~A~~~~~~ 245 (337)
+..+|...|++
T Consensus 481 d~~eAa~~yek 491 (559)
T KOG1155|consen 481 DLNEAAQYYEK 491 (559)
T ss_pred hHHHHHHHHHH
Confidence 66666655554
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.2e-12 Score=115.92 Aligned_cols=322 Identities=12% Similarity=0.065 Sum_probs=152.5
Q ss_pred chhhHHHHHHHHhcCCC--CchHhHHHHHHHHHhcCChHHHHHHHHHcccC--C--hhhHHHHHHHHHcCCChhHHHHHH
Q 037592 2 LKQGKEVHAKVITLGLC--GNVVVESSLVDMYGKCGLVDESHRVFDKMLKK--N--SVSSSALLQGYCQTGDFESVIRIF 75 (337)
Q Consensus 2 ~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~--~~~~~~l~~~~~~~g~~~~A~~~~ 75 (337)
++.+.++..-+...... .-...|-.+..+|...|++++|...|-+...- + +..+.-+...+++.|+++.+...|
T Consensus 286 y~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~f 365 (1018)
T KOG2002|consen 286 YERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCF 365 (1018)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHH
Confidence 44555555555554311 11233555667777777777777766655322 2 223444566666677777777666
Q ss_pred HHHhh--cCc-ccHHHHHHHHHhhc----hhhhhHHHHHHHHHhh-----------------------------------
Q 037592 76 REMEE--IDL-FSFGIVLRACAGLA----ALRLGKEVHCQYIRRS----------------------------------- 113 (337)
Q Consensus 76 ~~~~~--~~~-~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~----------------------------------- 113 (337)
++..+ ||. .+...+...|...+ ..+.|..++.+.++.-
T Consensus 366 Ekv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~ 445 (1018)
T KOG2002|consen 366 EKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILES 445 (1018)
T ss_pred HHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 66665 332 23334444443332 2344444444444332
Q ss_pred --CCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC-------CCcH------HhHHHHHHHHHhCCCHhHHHHHHHHHHhc
Q 037592 114 --GCKDVIIESALVDLYAKCGCVDFAHQIFLQMP-------VRNL------ITWNSMISGFAQNGRGEEALRIFDDMTEG 178 (337)
Q Consensus 114 --~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 178 (337)
..+.+...|.+...+...|.+.+|...|.+.. .+|. .+-..+...+-..++++.|.+.|..+.+.
T Consensus 446 ~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke 525 (1018)
T KOG2002|consen 446 KGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE 525 (1018)
T ss_pred cCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 22334444444444444444444444444433 0111 11112223333333444444444444332
Q ss_pred CCCCCH-hHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH----hcCCCchh
Q 037592 179 GTKPDH-VSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIEN----ADCRHDSS 253 (337)
Q Consensus 179 ~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~----~~~~~~~~ 253 (337)
. |+- ..|.-++......+...+|...++.++... ..++..+..++..+.+...+..|.+-|+. ....+|+.
T Consensus 526 h--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d--~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Y 601 (1018)
T KOG2002|consen 526 H--PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID--SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAY 601 (1018)
T ss_pred C--chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc--cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchh
Confidence 1 111 111112111112234445555555544322 23333444444455555555555543332 22234444
Q ss_pred HHHHHHHHHh------------cCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCCccCC
Q 037592 254 LWEVLLGACT------------TFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMP 321 (337)
Q Consensus 254 ~~~~l~~~~~------------~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 321 (337)
+.-+|.+.|. ..+..++|+++|.+++..+|.+..+-+-++.+++..|++.+|..+|.+.++..-. .
T Consensus 602 sliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~--~ 679 (1018)
T KOG2002|consen 602 SLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSD--F 679 (1018)
T ss_pred HHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhh--C
Confidence 4444444332 2234566777777777777776666666677777777777777777777765542 2
Q ss_pred CCcceecc
Q 037592 322 GKSWIEAN 329 (337)
Q Consensus 322 ~~~~~~~~ 329 (337)
...|+.++
T Consensus 680 ~dv~lNla 687 (1018)
T KOG2002|consen 680 EDVWLNLA 687 (1018)
T ss_pred CceeeeHH
Confidence 33455544
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.3e-12 Score=105.11 Aligned_cols=273 Identities=14% Similarity=0.039 Sum_probs=178.0
Q ss_pred CchhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHcccC----ChhhHHHHHHHHHcCCChhHHHHHHH
Q 037592 1 RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKK----NSVSSSALLQGYCQTGDFESVIRIFR 76 (337)
Q Consensus 1 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~ 76 (337)
|+++|+++...-.+.+ +.....|..-+.+--+.|+.+.+-..+.+.-++ +....-+........|+++.|..-+.
T Consensus 99 ~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~ 177 (400)
T COG3071 99 DFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVD 177 (400)
T ss_pred cHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHH
Confidence 4566666666655554 222333444556666777777777777777333 34445556667777777777777777
Q ss_pred HHhh---cCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCc-------hhHHHHHHHHHhcCCHHHHHHHHhcCC-
Q 037592 77 EMEE---IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV-------IIESALVDLYAKCGCVDFAHQIFLQMP- 145 (337)
Q Consensus 77 ~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~- 145 (337)
++.+ .+........++|.+.|++.....+..++.+.+.-.+. .+|..+++=....+..+.-...+++.+
T Consensus 178 ~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr 257 (400)
T COG3071 178 QLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPR 257 (400)
T ss_pred HHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccH
Confidence 7776 33445666677777778888777777777777664332 344445544444455555555666665
Q ss_pred --CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHH
Q 037592 146 --VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY 223 (337)
Q Consensus 146 --~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 223 (337)
+.++..-.+++.-+.+.|+.++|.++.++..+.+..|+. ...-.+.+.++...-++..+.-++.++.. +..+
T Consensus 258 ~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~~--p~L~ 331 (400)
T COG3071 258 KLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPED--PLLL 331 (400)
T ss_pred HhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCCC--hhHH
Confidence 345666667777777777888887777777776665551 12224456666666666666665654333 3567
Q ss_pred HHHHHHHHhcCChHHHHHHHHH-hcCCCchhHHHHHHHHHhcCCChhHHHHHHHHHHh
Q 037592 224 NCMVDLLGRAGLLEEAETLIEN-ADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME 280 (337)
Q Consensus 224 ~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 280 (337)
.+|...|.+.+.|.+|...|+. +...|+..+|+.+..++.+.|+...|.+..++...
T Consensus 332 ~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 332 STLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 7777777777778888777775 45677777777777777778888777777777765
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.4e-12 Score=112.48 Aligned_cols=325 Identities=16% Similarity=0.113 Sum_probs=214.4
Q ss_pred hhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHcccCC------hhhHHHHHHHHHcCCChhHHHHHHH
Q 037592 3 KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKN------SVSSSALLQGYCQTGDFESVIRIFR 76 (337)
Q Consensus 3 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~ 76 (337)
..+.+++...-..+ +-++.+.+.|...|.-.|+++.+..+...++..+ ..+|..+..+|...|++++|..+|.
T Consensus 253 ~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~ 331 (1018)
T KOG2002|consen 253 KKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYM 331 (1018)
T ss_pred HHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 34555555555443 4466677777777778888888887777764432 3457777888888888888888888
Q ss_pred HHhh--cCccc--HHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcC----CHHHHHHHHhcCCC--
Q 037592 77 EMEE--IDLFS--FGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCG----CVDFAHQIFLQMPV-- 146 (337)
Q Consensus 77 ~~~~--~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~-- 146 (337)
+..+ +|..+ +.-+...+...|+.+.+...|+...+..+ .+..+...|...|...+ ..++|..++.+...
T Consensus 332 ~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p-~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~ 410 (1018)
T KOG2002|consen 332 ESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLP-NNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT 410 (1018)
T ss_pred HHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCc-chHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc
Confidence 7777 44433 34466777788888888888888877654 55666777777776665 45666666666653
Q ss_pred -CcHHhHHHHHHHHHhCCCHhHHHHHHHHHH----hcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcC--CCC-
Q 037592 147 -RNLITWNSMISGFAQNGRGEEALRIFDDMT----EGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYR--IKP- 218 (337)
Q Consensus 147 -~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~----~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~- 218 (337)
.|...|-.+...+...+-+ .++.+|..+. ..+..+.....|.+...+...|+++.|...|..+..... ..+
T Consensus 411 ~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~d 489 (1018)
T KOG2002|consen 411 PVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKD 489 (1018)
T ss_pred cccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcc
Confidence 3556676666666554433 3366665543 334446667777787777888888888888887743310 112
Q ss_pred -----CHHHHHHHHHHHHhcCChHHHHHHHHHh-cCCCchhH-HHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHH
Q 037592 219 -----KIEHYNCMVDLLGRAGLLEEAETLIENA-DCRHDSSL-WEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVL 291 (337)
Q Consensus 219 -----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 291 (337)
+..+-..+...+-..++.+.|.+.|..+ ...|.-.. |-.+.......++..+|...++.+...+..++..+..
T Consensus 490 e~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl 569 (1018)
T KOG2002|consen 490 EGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSL 569 (1018)
T ss_pred ccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHH
Confidence 2223344556666677888888888775 34444322 2223323345567788888888888877777888888
Q ss_pred HHHHHHHcCChhhHHHHHHHHHHhCCccCCCCcceeccc
Q 037592 292 LDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANS 330 (337)
Q Consensus 292 l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~ 330 (337)
++..+.+...|..|..-|+.+...-...+..++.|.++|
T Consensus 570 ~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN 608 (1018)
T KOG2002|consen 570 LGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGN 608 (1018)
T ss_pred HHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhH
Confidence 888888888888888888777766555556666666665
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.62 E-value=6e-13 Score=105.86 Aligned_cols=198 Identities=13% Similarity=0.025 Sum_probs=155.4
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHH
Q 037592 117 DVIIESALVDLYAKCGCVDFAHQIFLQMP---VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSA 193 (337)
Q Consensus 117 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 193 (337)
....+..+...+...|++++|...+++.. +.+...+..+...|...|++++|.+.+++..+... .+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHH
Confidence 35666777888888888888888888765 23456777888888889999999999988887533 345566677778
Q ss_pred HhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cCCC-chhHHHHHHHHHhcCCChhHH
Q 037592 194 CSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DCRH-DSSLWEVLLGACTTFRNAHVA 271 (337)
Q Consensus 194 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a 271 (337)
+...|++++|.+.++.++.....+.....+..+..++...|++++|...+++. ...| +...+..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 88889999999999988653222334566777888899999999999999874 3333 455677788889999999999
Q ss_pred HHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHh
Q 037592 272 ERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYS 315 (337)
Q Consensus 272 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 315 (337)
...++++.+..|+++..+..++..+...|+.++|..+.+.+...
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999998888877788888888999999999999988877653
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.6e-11 Score=100.91 Aligned_cols=317 Identities=9% Similarity=0.074 Sum_probs=212.1
Q ss_pred chhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHc--ccCChhhHHHHHHHHHcCCChhHHHHHHHHHh
Q 037592 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKM--LKKNSVSSSALLQGYCQTGDFESVIRIFREME 79 (337)
Q Consensus 2 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 79 (337)
+.-|.++|+.-.+- .|+...|.+.|..=.+.+.++.|..++++. .+|++.+|--...-=.+.|+...|..+|+.+.
T Consensus 157 i~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAi 234 (677)
T KOG1915|consen 157 IAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAI 234 (677)
T ss_pred cHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 34566777766654 677778888887777777788888888775 56777777777777777777777777777776
Q ss_pred h--cCc----ccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCC-chhHHHHHHHHHhcCCHHHHHHHH---hcCC----
Q 037592 80 E--IDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD-VIIESALVDLYAKCGCVDFAHQIF---LQMP---- 145 (337)
Q Consensus 80 ~--~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~---~~~~---- 145 (337)
+ .|. ..+.+....-.+...++.|..+|+-++..-+... ...|..+...--+-|+........ +++.
T Consensus 235 e~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~ 314 (677)
T KOG1915|consen 235 EFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKE 314 (677)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHH
Confidence 6 222 2333333333455667777777777776533211 344444444444455544333322 2222
Q ss_pred ----CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHh-------HHHHHHHHH---hhcCchhhHHHHHHHHH
Q 037592 146 ----VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHV-------SFIGVLSAC---SHMGLIDRGRKHFASMT 211 (337)
Q Consensus 146 ----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-------~~~~l~~~~---~~~~~~~~a~~~~~~~~ 211 (337)
+-|-.+|.-.+..-...|+.+...++|++.... ++|-.. .|..+=.++ ....+.+.+.++|+..+
T Consensus 315 v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l 393 (677)
T KOG1915|consen 315 VSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACL 393 (677)
T ss_pred HHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 224567777777777789999999999998876 555321 122111122 24678888888888886
Q ss_pred HhcCCCCCHHHHHHHH----HHHHhcCChHHHHHHHHH-hcCCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCcc
Q 037592 212 KEYRIKPKIEHYNCMV----DLLGRAGLLEEAETLIEN-ADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCH 286 (337)
Q Consensus 212 ~~~~~~~~~~~~~~l~----~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 286 (337)
+ -++....|+..+- +...++.++..|.+++.. +|..|-..++...|..-.+.++++....+|++.++..|.+.
T Consensus 394 ~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c 471 (677)
T KOG1915|consen 394 D--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENC 471 (677)
T ss_pred h--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhh
Confidence 4 3444445554443 334467888889988875 68888888888888888888899999999999999888888
Q ss_pred chHHHHHHHHHHcCChhhHHHHHHHHHHhCCccCCCC
Q 037592 287 LSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGK 323 (337)
Q Consensus 287 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 323 (337)
.+|...+..-...|+++.|..+|+-.........|..
T Consensus 472 ~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpel 508 (677)
T KOG1915|consen 472 YAWSKYAELETSLGDTDRARAIFELAISQPALDMPEL 508 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHH
Confidence 8888888888888888888888887776554444433
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.7e-12 Score=108.59 Aligned_cols=260 Identities=12% Similarity=0.012 Sum_probs=212.1
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHHhh---cCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHH
Q 037592 51 NSVSSSALLQGYCQTGDFESVIRIFREMEE---IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDL 127 (337)
Q Consensus 51 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 127 (337)
++........-+...+++.+..++.+...+ ++...+..-|.++...|+..+-..+-.++++.-| ....+|.++.-.
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP-~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYP-SKALSWFAVGCY 321 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCC-CCCcchhhHHHH
Confidence 334445555667788999999999999998 5555666777788899999888888888888755 678999999999
Q ss_pred HHhcCCHHHHHHHHhcCCCC---cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHH
Q 037592 128 YAKCGCVDFAHQIFLQMPVR---NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGR 204 (337)
Q Consensus 128 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 204 (337)
|...|+.++|++.|.+...- -...|-.+..+|+-.|..++|+..+..+-+. ++-...-+.-+.--|.+.++.+.|.
T Consensus 322 Yl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe 400 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAE 400 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHH
Confidence 99999999999999988743 3578999999999999999999999887764 2112222333445678899999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhc--------CCC-chhHHHHHHHHHhcCCChhHHHHHH
Q 037592 205 KHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENAD--------CRH-DSSLWEVLLGACTTFRNAHVAERVA 275 (337)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~-~~~~~~~l~~~~~~~g~~~~a~~~~ 275 (337)
++|..+.. -.|.|+.+.+.+.-.....+.+.+|..+|+..- ..+ -..+++.|..+|.+.+.+++|+..+
T Consensus 401 ~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~ 478 (611)
T KOG1173|consen 401 KFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYY 478 (611)
T ss_pred HHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHH
Confidence 99999863 224567888888888888999999999998631 111 3345778889999999999999999
Q ss_pred HHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHH
Q 037592 276 KKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKY 314 (337)
Q Consensus 276 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 314 (337)
++++.+.|.+..++..++..|...|+++.|.+.|.+..-
T Consensus 479 q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 479 QKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 999999999999999999999999999999999987654
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.8e-11 Score=98.41 Aligned_cols=238 Identities=15% Similarity=0.134 Sum_probs=179.5
Q ss_pred HHHHHhhcCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC----CCcH
Q 037592 74 IFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP----VRNL 149 (337)
Q Consensus 74 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~ 149 (337)
++-+..-.+..++.++|.+.++-...+.|.++|++......+.+..+||.+|.+-.-... .+++.+|. .||.
T Consensus 198 L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl 273 (625)
T KOG4422|consen 198 LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNL 273 (625)
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCch
Confidence 333333356678999999999999999999999999988888999999999877554433 44444444 7999
Q ss_pred HhHHHHHHHHHhCCCHhHH----HHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchh-hHHHHHHHHHHhc---CCC----
Q 037592 150 ITWNSMISGFAQNGRGEEA----LRIFDDMTEGGTKPDHVSFIGVLSACSHMGLID-RGRKHFASMTKEY---RIK---- 217 (337)
Q Consensus 150 ~~~~~l~~~~~~~~~~~~a----~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~---~~~---- 217 (337)
.|+|+++++..+.|+++.| .+++.+|++.|+.|...+|..+|..+++.++.. .+..++..+...- .++
T Consensus 274 ~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p 353 (625)
T KOG4422|consen 274 FTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITP 353 (625)
T ss_pred HhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCC
Confidence 9999999999999987654 567888999999999999999998888877654 4555555553321 122
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHhc-------CCCc---hhHHHHHHHHHhcCCChhHHHHHHHHHHh--cCCCc
Q 037592 218 PKIEHYNCMVDLLGRAGLLEEAETLIENAD-------CRHD---SSLWEVLLGACTTFRNAHVAERVAKKIME--LKPDC 285 (337)
Q Consensus 218 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~p~~ 285 (337)
.+...|...+..|.+..+.+-|.++-.-+. +.|+ ...|..+....++....+.-...|+.+.- ..|+
T Consensus 354 ~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~- 432 (625)
T KOG4422|consen 354 TDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPH- 432 (625)
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCC-
Confidence 244566677788888888888888765321 2222 22355566777788888888888888876 5677
Q ss_pred cchHHHHHHHHHHcCChhhHHHHHHHHHHhC
Q 037592 286 HLSYVLLDNVYRAVGRWNDAFKIRTLMKYSG 316 (337)
Q Consensus 286 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 316 (337)
+.+-..++++....|+++-.-+++..++..|
T Consensus 433 ~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 433 SQTMIHLLRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred chhHHHHHHHHhhcCcchhHHHHHHHHHHhh
Confidence 6777888889999999999999999988877
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.8e-12 Score=113.65 Aligned_cols=256 Identities=13% Similarity=0.001 Sum_probs=181.6
Q ss_pred ChhhHHHHHHHHHc-----CCChhHHHHHHHHHhh--cCcc-cHHHHHHHHHh---------hchhhhhHHHHHHHHHhh
Q 037592 51 NSVSSSALLQGYCQ-----TGDFESVIRIFREMEE--IDLF-SFGIVLRACAG---------LAALRLGKEVHCQYIRRS 113 (337)
Q Consensus 51 ~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~--~~~~-~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~ 113 (337)
+...|...+.+... .+.+++|+.+|++..+ |+.. .|..+..++.. .+++++|...++++++..
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld 334 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD 334 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC
Confidence 44555555554321 2446799999999998 5443 44445444432 345789999999999987
Q ss_pred CCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC--CC-cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHh-HHHH
Q 037592 114 GCKDVIIESALVDLYAKCGCVDFAHQIFLQMP--VR-NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHV-SFIG 189 (337)
Q Consensus 114 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ 189 (337)
+ .+...+..+...+...|++++|...|++.. .| +...+..+...+...|++++|...+++..+. .|+.. .+..
T Consensus 335 P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~ 411 (553)
T PRK12370 335 H-NNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGIT 411 (553)
T ss_pred C-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHH
Confidence 6 677888889999999999999999999977 34 5668888999999999999999999999885 44432 2333
Q ss_pred HHHHHhhcCchhhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhc-CCCchhH-HHHHHHHHhcCC
Q 037592 190 VLSACSHMGLIDRGRKHFASMTKEYRIKP-KIEHYNCMVDLLGRAGLLEEAETLIENAD-CRHDSSL-WEVLLGACTTFR 266 (337)
Q Consensus 190 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~-~~~l~~~~~~~g 266 (337)
++..+...|++++|...+++++... +| ++..+..+..++...|++++|...++++. ..|+... .+.+...|...|
T Consensus 412 ~~~~~~~~g~~eeA~~~~~~~l~~~--~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 489 (553)
T PRK12370 412 KLWITYYHTGIDDAIRLGDELRSQH--LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS 489 (553)
T ss_pred HHHHHHhccCHHHHHHHHHHHHHhc--cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH
Confidence 4445666899999999999986542 34 45567778889999999999999998853 3444333 444555677777
Q ss_pred ChhHHHHHHHHHHh---cCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCC
Q 037592 267 NAHVAERVAKKIME---LKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGV 317 (337)
Q Consensus 267 ~~~~a~~~~~~~~~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 317 (337)
+.|...++.+.+ ..|.++.. +...|.-.|+.+.+... +++.+.|.
T Consensus 490 --~~a~~~l~~ll~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~-~~~~~~~~ 537 (553)
T PRK12370 490 --ERALPTIREFLESEQRIDNNPGL---LPLVLVAHGEAIAEKMW-NKFKNEDN 537 (553)
T ss_pred --HHHHHHHHHHHHHhhHhhcCchH---HHHHHHHHhhhHHHHHH-HHhhccch
Confidence 477777777766 34443222 44555666776666666 77766543
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.2e-11 Score=100.83 Aligned_cols=316 Identities=11% Similarity=0.023 Sum_probs=245.6
Q ss_pred chhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHccc----------C--------------Ch-----
Q 037592 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLK----------K--------------NS----- 52 (337)
Q Consensus 2 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----------~--------------~~----- 52 (337)
|+.|.++++...+. ++-+..+|.+-...=-.+|+.+...++.++-+. + .+
T Consensus 422 YenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQA 500 (913)
T KOG0495|consen 422 YENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQA 500 (913)
T ss_pred HHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHH
Confidence 45678888888764 566778888877777788888888777766410 0 12
Q ss_pred ----------------hhHHHHHHHHHcCCChhHHHHHHHHHhh---cCcccHHHHHHHHHhhchhhhhHHHHHHHHHhh
Q 037592 53 ----------------VSSSALLQGYCQTGDFESVIRIFREMEE---IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRS 113 (337)
Q Consensus 53 ----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 113 (337)
.+|..-...|.+.+.++-|..+|....+ .+...|......--..|..++...++++++...
T Consensus 501 Ii~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~ 580 (913)
T KOG0495|consen 501 IIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC 580 (913)
T ss_pred HHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 2344445556667777778888887777 344456666666667788889999999999875
Q ss_pred CCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHH
Q 037592 114 GCKDVIIESALVDLYAKCGCVDFAHQIFLQMP---VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGV 190 (337)
Q Consensus 114 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 190 (337)
+ .....|-....-+...|++..|+.++.+.. +.+...|.+-+..-..+.+++.|..+|.+... ..|+...|.--
T Consensus 581 p-kae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs 657 (913)
T KOG0495|consen 581 P-KAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKS 657 (913)
T ss_pred C-cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHH
Confidence 4 556667777778888999999999998876 34667898899999999999999999998877 55677777666
Q ss_pred HHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH-hcCCC-chhHHHHHHHHHhcCCCh
Q 037592 191 LSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIEN-ADCRH-DSSLWEVLLGACTTFRNA 268 (337)
Q Consensus 191 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~-~~~~~~~l~~~~~~~g~~ 268 (337)
+...--.++.++|.+++++.++.+ +.-...|..+.+.+-+.++++.|.+.|.. ....| ....|-.+...--+.|++
T Consensus 658 ~~~er~ld~~eeA~rllEe~lk~f--p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~ 735 (913)
T KOG0495|consen 658 ANLERYLDNVEEALRLLEEALKSF--PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQL 735 (913)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHhC--CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcch
Confidence 666666799999999999998743 44467888999999999999999999875 44444 456788888888889999
Q ss_pred hHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCCccCCCCcc
Q 037592 269 HVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSW 325 (337)
Q Consensus 269 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 325 (337)
-.|..++++..-.+|++...|...+.+-.+.|..+.|..+..+..+.... .+.-|
T Consensus 736 ~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~--sg~LW 790 (913)
T KOG0495|consen 736 VRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPS--SGLLW 790 (913)
T ss_pred hhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc--cchhH
Confidence 99999999999999999999999999999999999999888777664432 44444
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.1e-11 Score=106.40 Aligned_cols=295 Identities=14% Similarity=0.105 Sum_probs=220.7
Q ss_pred hHhHHHHHHHHHhcCChHHHHHHHHHcccC---ChhhHHHHHHHHHcCCChhHHHHHHHHHhh---cCcccHHHHHHHHH
Q 037592 21 VVVESSLVDMYGKCGLVDESHRVFDKMLKK---NSVSSSALLQGYCQTGDFESVIRIFREMEE---IDLFSFGIVLRACA 94 (337)
Q Consensus 21 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~ 94 (337)
....-.....+...|++++|.+++.++++. +...|.+|...|-..|+.++++..+-.+.. .|..-|..+.....
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~ 218 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSE 218 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 333444445555569999999999999554 577899999999999999999988876655 45567888888899
Q ss_pred hhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcH--------HhHHHHHHHHHhCCCHh
Q 037592 95 GLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNL--------ITWNSMISGFAQNGRGE 166 (337)
Q Consensus 95 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~~ 166 (337)
+.|++++|.-.|.++++..+ ++...+-.-...|-+.|+...|...|.++.+.++ ..-...+..|...++.+
T Consensus 219 ~~~~i~qA~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e 297 (895)
T KOG2076|consen 219 QLGNINQARYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERE 297 (895)
T ss_pred hcccHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHH
Confidence 99999999999999999987 6666666778899999999999999998873222 22334567778888889
Q ss_pred HHHHHHHHHHhcC-CCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHh--------------------------cCCCCC
Q 037592 167 EALRIFDDMTEGG-TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKE--------------------------YRIKPK 219 (337)
Q Consensus 167 ~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------------------------~~~~~~ 219 (337)
.|.+.++.....+ -..+...++.++..+.+...++.|.......... .+..++
T Consensus 298 ~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~ 377 (895)
T KOG2076|consen 298 RAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYD 377 (895)
T ss_pred HHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCcc
Confidence 9999999887632 2335567788888889999999998887776430 012233
Q ss_pred HHHHHHHHHHHH--hcCChHHHHHHHHHhc---CCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCc-cchHHHHH
Q 037592 220 IEHYNCMVDLLG--RAGLLEEAETLIENAD---CRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDC-HLSYVLLD 293 (337)
Q Consensus 220 ~~~~~~l~~~~~--~~g~~~~A~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~ 293 (337)
..++. ++-++. +.++..+++.-+-... ...+...|.-+..++...|++.+|+.++..+....+.. ...|..++
T Consensus 378 l~v~r-l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a 456 (895)
T KOG2076|consen 378 LRVIR-LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLA 456 (895)
T ss_pred chhHh-HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHH
Confidence 33311 222333 3444555554443222 23355567778899999999999999999999866552 56899999
Q ss_pred HHHHHcCChhhHHHHHHHHHHhCC
Q 037592 294 NVYRAVGRWNDAFKIRTLMKYSGV 317 (337)
Q Consensus 294 ~~~~~~g~~~~A~~~~~~m~~~~~ 317 (337)
.+|...|..++|.+.|++......
T Consensus 457 ~c~~~l~e~e~A~e~y~kvl~~~p 480 (895)
T KOG2076|consen 457 RCYMELGEYEEAIEFYEKVLILAP 480 (895)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCC
Confidence 999999999999999999887543
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.4e-12 Score=99.55 Aligned_cols=156 Identities=13% Similarity=0.067 Sum_probs=68.2
Q ss_pred hhHHHHHHHHHcCCChhHHHHHHHHHhh--cC-cccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 037592 53 VSSSALLQGYCQTGDFESVIRIFREMEE--ID-LFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYA 129 (337)
Q Consensus 53 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 129 (337)
..+..+...+...|++++|.+.++++.+ |+ ...+..+...+...|++++|...+++.++..+ .+...+..+...+.
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHH
Confidence 3445555555555566655555555544 22 22333444444445555555555555544432 23334444444444
Q ss_pred hcCCHHHHHHHHhcCCC-----CcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHH
Q 037592 130 KCGCVDFAHQIFLQMPV-----RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGR 204 (337)
Q Consensus 130 ~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 204 (337)
..|++++|.+.+++... .....+..+...+...|++++|...+++..+... .+...+..+...+...|++++|.
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcCCHHHHH
Confidence 44444444444444331 0122333334444444444444444444443211 12223333334444444444444
Q ss_pred HHHHHH
Q 037592 205 KHFASM 210 (337)
Q Consensus 205 ~~~~~~ 210 (337)
..++++
T Consensus 190 ~~~~~~ 195 (234)
T TIGR02521 190 AYLERY 195 (234)
T ss_pred HHHHHH
Confidence 444444
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.4e-12 Score=113.94 Aligned_cols=212 Identities=11% Similarity=-0.038 Sum_probs=164.2
Q ss_pred chhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHh---------cCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCC
Q 037592 97 AALRLGKEVHCQYIRRSGCKDVIIESALVDLYAK---------CGCVDFAHQIFLQMP---VRNLITWNSMISGFAQNGR 164 (337)
Q Consensus 97 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~ 164 (337)
+++++|...+++.++..+ .+...|..+..+|.. .+++++|...+++.. +.+..++..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP-~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSP-NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 457899999999998765 456667666665542 345889999999887 3367788888899999999
Q ss_pred HhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHH
Q 037592 165 GEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPK-IEHYNCMVDLLGRAGLLEEAETLI 243 (337)
Q Consensus 165 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~ 243 (337)
+++|...|+++.+.++. +...+..+...+...|++++|...++++++. .|+ ...+..++..+...|++++|...+
T Consensus 354 ~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l---~P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 354 YIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKL---DPTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 99999999999986422 4556777788899999999999999999754 444 333344555677789999999999
Q ss_pred HHhc-C-CCc-hhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHh
Q 037592 244 ENAD-C-RHD-SSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYS 315 (337)
Q Consensus 244 ~~~~-~-~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 315 (337)
++.- . .|+ +..+..+..++...|++++|...++++....|.+......+...|...| ++|...++.+.+.
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 8753 2 343 3446667778889999999999999988888887777777777888877 4888888887654
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.4e-12 Score=101.00 Aligned_cols=224 Identities=9% Similarity=-0.043 Sum_probs=147.9
Q ss_pred HHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC--CCcHHh-HHHHHHHHHhCC
Q 037592 87 GIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP--VRNLIT-WNSMISGFAQNG 163 (337)
Q Consensus 87 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~-~~~l~~~~~~~~ 163 (337)
+.+..+|.+.|-+.+|...++..++. .|-+.||-.|..+|.+..+...|+.++.+-. -|..+| ..-+...+-..+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH
Confidence 45666777777777777777666665 2445566666777777777777777776665 233333 334556666667
Q ss_pred CHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 037592 164 RGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLI 243 (337)
Q Consensus 164 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 243 (337)
+.++|.++|+...+.. +.+.....++...|.-.++.+-|+.+|++++.- |+ .++..|+.+.-+|.-.++++-++.-|
T Consensus 305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~-~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GA-QSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHh-cC-CChHHHhhHHHHHHhhcchhhhHHHH
Confidence 7777777777776642 234455555666666677777777777777544 43 45567777777777777777777777
Q ss_pred HHhc---CCC--chhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHh
Q 037592 244 ENAD---CRH--DSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYS 315 (337)
Q Consensus 244 ~~~~---~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 315 (337)
++.- ..| -...|..+.......|++..|.+.|+-++..+|++..+++.|.-.-.+.|+.++|..+++.....
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 6531 112 23446666667777777777777777777777777777777777777778888887777765553
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.4e-10 Score=95.27 Aligned_cols=182 Identities=13% Similarity=0.078 Sum_probs=139.2
Q ss_pred hcCCHHHHHHHHhcCCCCcHHhHHHH---HHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHH
Q 037592 130 KCGCVDFAHQIFLQMPVRNLITWNSM---ISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKH 206 (337)
Q Consensus 130 ~~g~~~~A~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 206 (337)
..|++++|.+.+++....|...-.+| .-.+-..|+.++|++.|-++... +.-+......+...|-...+...|+++
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~ 580 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIEL 580 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence 35778888888888886665443333 34567789999999999877653 233555666777888888889999998
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHH-Hhc-CCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCC
Q 037592 207 FASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIE-NAD-CRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPD 284 (337)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~-~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 284 (337)
+..+. . -++.|+.+...|...|-+.|+-.+|.+..- .-. .+-+..+..-|..-|....-+++++.+|+++.-+.|+
T Consensus 581 ~~q~~-s-lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~ 658 (840)
T KOG2003|consen 581 LMQAN-S-LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPN 658 (840)
T ss_pred HHHhc-c-cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCcc
Confidence 87763 2 566778999999999999999999998754 333 3346667777777788888899999999999999999
Q ss_pred ccchHHHH-HHHHHHcCChhhHHHHHHHHHHh
Q 037592 285 CHLSYVLL-DNVYRAVGRWNDAFKIRTLMKYS 315 (337)
Q Consensus 285 ~~~~~~~l-~~~~~~~g~~~~A~~~~~~m~~~ 315 (337)
. .-|..+ ..++.+.|++.+|..+|+..-+.
T Consensus 659 ~-~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 659 Q-SKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred H-HHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 4 555555 55677889999999999987654
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.5e-11 Score=99.04 Aligned_cols=273 Identities=13% Similarity=0.015 Sum_probs=214.6
Q ss_pred CCchHhHHHHHHHHHhcCChHHHHHHHHHcccC---ChhhHHHHHHHHHcCCChhHHHHHHHHHhh--cC-cccHHHHHH
Q 037592 18 CGNVVVESSLVDMYGKCGLVDESHRVFDKMLKK---NSVSSSALLQGYCQTGDFESVIRIFREMEE--ID-LFSFGIVLR 91 (337)
Q Consensus 18 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~ 91 (337)
.-+........+-+...+++.+..++++.+.+. +...+..-|.++...|+..+-..+=.++.+ |+ ..+|.++.-
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGC 320 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHH
Confidence 345555666677788889999999999998544 556677778889999998888888888888 54 458999988
Q ss_pred HHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHH
Q 037592 92 ACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP---VRNLITWNSMISGFAQNGRGEEA 168 (337)
Q Consensus 92 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a 168 (337)
-|.-.|...+|+++|.+...... .-...|-.+...|.-.|..++|...+.... +.....+.-+..-|.+.++.+-|
T Consensus 321 YYl~i~k~seARry~SKat~lD~-~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDP-TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCc-cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHH
Confidence 88888999999999999887654 446788899999999999999998876654 22333344466678889999999
Q ss_pred HHHHHHHHhcCCCC-CHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcC-----CCCCHHHHHHHHHHHHhcCChHHHHHH
Q 037592 169 LRIFDDMTEGGTKP-DHVSFIGVLSACSHMGLIDRGRKHFASMTKEYR-----IKPKIEHYNCMVDLLGRAGLLEEAETL 242 (337)
Q Consensus 169 ~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~ 242 (337)
.+.|.+... +.| |+...+-+.......+.+.+|..+|+..+..-. ......+++.|+.+|.+.+.+++|+..
T Consensus 400 e~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 400 EKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 999998877 444 555666666666678999999999998763211 112456789999999999999999999
Q ss_pred HHHh--cCCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHH
Q 037592 243 IENA--DCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLD 293 (337)
Q Consensus 243 ~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 293 (337)
+++. -.+.+..++.++.-.|...|+++.|++.|.+++.+.|++..+-..|.
T Consensus 478 ~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 478 YQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLK 530 (611)
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 9973 24457888899999999999999999999999999999744433333
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.5e-10 Score=93.05 Aligned_cols=297 Identities=12% Similarity=0.068 Sum_probs=183.1
Q ss_pred CCCchHhHHHHHHHHHhcCChHHHHHHHHHcc----cCChhhHHHHHHHHHcCCChhHHHHHHHHHhh----cCcccHHH
Q 037592 17 LCGNVVVESSLVDMYGKCGLVDESHRVFDKML----KKNSVSSSALLQGYCQTGDFESVIRIFREMEE----IDLFSFGI 88 (337)
Q Consensus 17 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~ 88 (337)
.+.+..+|.++|.++|+-...+.|.+++++.. +.+..+||.+|.+-.- ....+++.+|.+ ||..|+|+
T Consensus 203 ~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl~TfNa 278 (625)
T KOG4422|consen 203 LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNLFTFNA 278 (625)
T ss_pred cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCchHhHHH
Confidence 35577899999999999999999999998873 3377788888865332 223677777776 99999999
Q ss_pred HHHHHHhhchhhh----hHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHH-HHHHHhcCC------------CCcHHh
Q 037592 89 VLRACAGLAALRL----GKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDF-AHQIFLQMP------------VRNLIT 151 (337)
Q Consensus 89 l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~------------~~~~~~ 151 (337)
++.+..+.|+++. |.+++.+|.+.|+.|+..+|..++..+.+.++..+ |..++.++. +.|...
T Consensus 279 lL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~F 358 (625)
T KOG4422|consen 279 LLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKF 358 (625)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHH
Confidence 9999999997765 45678888999999999999999998888887755 333333322 113344
Q ss_pred HHHHHHHHHhCCCHhHHHHH------------------------------------------HHHHHhcCCCCCHhHHHH
Q 037592 152 WNSMISGFAQNGRGEEALRI------------------------------------------FDDMTEGGTKPDHVSFIG 189 (337)
Q Consensus 152 ~~~l~~~~~~~~~~~~a~~~------------------------------------------~~~m~~~~~~p~~~~~~~ 189 (337)
|...+..|....+.+-|.++ |+.|.-.-.-|+..+...
T Consensus 359 F~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~ 438 (625)
T KOG4422|consen 359 FQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIH 438 (625)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHH
Confidence 44455555555555544443 333333323344455555
Q ss_pred HHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-Ch--------HH-----HHHHHHH-------h-c
Q 037592 190 VLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG-LL--------EE-----AETLIEN-------A-D 247 (337)
Q Consensus 190 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~--------~~-----A~~~~~~-------~-~ 247 (337)
++.+..-.|.++-.-++|..+ ...|...+......+...+++.+ +. .. |..+++. + .
T Consensus 439 ~lrA~~v~~~~e~ipRiw~D~-~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~ 517 (625)
T KOG4422|consen 439 LLRALDVANRLEVIPRIWKDS-KEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRA 517 (625)
T ss_pred HHHHHhhcCcchhHHHHHHHH-HHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHh
Confidence 555555555555555555555 33343333333333333333332 11 00 0111110 1 1
Q ss_pred CCCchhHHHHHHHHHhcCCChhHHHHHHHHHHh---cCCCcc--chHHHHHHHHHHcCChhhHHHHHHHHHHhCCc
Q 037592 248 CRHDSSLWEVLLGACTTFRNAHVAERVAKKIME---LKPDCH--LSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVK 318 (337)
Q Consensus 248 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 318 (337)
..-.+...+.+...+.+.|..++|.+++.-..+ ..|..+ .+...+++.-...+..-.|..+++-|...+..
T Consensus 518 ~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~ 593 (625)
T KOG4422|consen 518 QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLP 593 (625)
T ss_pred ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCch
Confidence 222334455556667788888888888887754 234422 23335555666667888888888888766654
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.1e-10 Score=92.97 Aligned_cols=266 Identities=12% Similarity=-0.012 Sum_probs=133.0
Q ss_pred CCchHhHHHHHHHHHhcCChHHHHHHHHHcccCChhh---HHHHHHHHHcCCChhHHHHHHHHHhhcC---cccHHHHHH
Q 037592 18 CGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVS---SSALLQGYCQTGDFESVIRIFREMEEID---LFSFGIVLR 91 (337)
Q Consensus 18 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~ 91 (337)
+-|+.....+...+...|+.++|+..|++....|+.+ .......+.+.|+.++...+...+...+ ...|..-+.
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~ 308 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQ 308 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhh
Confidence 3344555556666666666666666665553222221 1222233345555555555555544421 222333333
Q ss_pred HHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC--C-CcHHhHHHHHHHHHhCCCHhHH
Q 037592 92 ACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP--V-RNLITWNSMISGFAQNGRGEEA 168 (337)
Q Consensus 92 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~-~~~~~~~~l~~~~~~~~~~~~a 168 (337)
.....+++..|..+-++.++... .+...+-.-...+...|+.++|.-.|+... . -+...|.-|+.+|...|++.+|
T Consensus 309 ~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA 387 (564)
T KOG1174|consen 309 LLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEA 387 (564)
T ss_pred hhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHH
Confidence 33445555555555555555433 333444434445555666666666665544 2 2455666666666666666666
Q ss_pred HHHHHHHHhcCCCCCHhHHHHHH-HHHh-hcCchhhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHH
Q 037592 169 LRIFDDMTEGGTKPDHVSFIGVL-SACS-HMGLIDRGRKHFASMTKEYRIKPK-IEHYNCMVDLLGRAGLLEEAETLIEN 245 (337)
Q Consensus 169 ~~~~~~m~~~~~~p~~~~~~~l~-~~~~-~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 245 (337)
.-.-+...+. ++.+..+...+. ..|. ...--++|.++++..+ .+.|+ ....+.+...+..-|..+.+..++++
T Consensus 388 ~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 388 NALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred HHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 5554443332 222333333331 2222 2223355555555554 22333 34444555555566666666666655
Q ss_pred -hcCCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccch
Q 037592 246 -ADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLS 288 (337)
Q Consensus 246 -~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 288 (337)
+...||....+.|...+...+.+++|...|..+++++|++..+
T Consensus 464 ~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~s 507 (564)
T KOG1174|consen 464 HLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRT 507 (564)
T ss_pred HHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHH
Confidence 3455566556666666666666666666666666666665433
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.7e-11 Score=96.21 Aligned_cols=227 Identities=12% Similarity=0.047 Sum_probs=194.8
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHhh--cCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCC
Q 037592 56 SALLQGYCQTGDFESVIRIFREMEE--IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGC 133 (337)
Q Consensus 56 ~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 133 (337)
+.+..+|.+.|.+.+|.+.++...+ |.+.||..|-.+|.+..++..|+.++.+-++.-+ -++.....+.+.+...++
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP-~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFP-FDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCC-chhhhhhhhHHHHHHHHh
Confidence 5688999999999999999998887 8889999999999999999999999999887632 455555668889999999
Q ss_pred HHHHHHHHhcCCC---CcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHH
Q 037592 134 VDFAHQIFLQMPV---RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASM 210 (337)
Q Consensus 134 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 210 (337)
.++|.++++...+ .++.+...+...|.-.++++-|+.+|+++++.|+. +...|..+.-+|.-.+++|-++.-|.++
T Consensus 306 ~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RA 384 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRA 384 (478)
T ss_pred HHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHH
Confidence 9999999998873 35666777778899999999999999999999986 7778888888888999999999999998
Q ss_pred HHhcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHh--cCCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCc
Q 037592 211 TKEYRIKPK--IEHYNCMVDLLGRAGLLEEAETLIENA--DCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDC 285 (337)
Q Consensus 211 ~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 285 (337)
+.. -..|+ ..+|..+.......|++..|.+.|+-. ....+...++.|.-.-.+.|+++.|..+++.+....|+-
T Consensus 385 lst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m 462 (478)
T KOG1129|consen 385 LST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDM 462 (478)
T ss_pred Hhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccc
Confidence 654 22343 568999999999999999999999963 344567789999988999999999999999999999884
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.6e-11 Score=99.53 Aligned_cols=216 Identities=10% Similarity=-0.058 Sum_probs=142.9
Q ss_pred HHcCCChhHHHHHHHHHhh---cC----cccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCH
Q 037592 62 YCQTGDFESVIRIFREMEE---ID----LFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCV 134 (337)
Q Consensus 62 ~~~~g~~~~A~~~~~~~~~---~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 134 (337)
....+..+.++.-+.++.. .+ ...|..+...+...|+.++|...|++.++..+ .+...|+.+...+...|++
T Consensus 36 ~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~ 114 (296)
T PRK11189 36 LQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNF 114 (296)
T ss_pred cCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCH
Confidence 3344667778888877775 11 23466777778888888888888888888765 5678888888888888888
Q ss_pred HHHHHHHhcCC--CC-cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHH
Q 037592 135 DFAHQIFLQMP--VR-NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMT 211 (337)
Q Consensus 135 ~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 211 (337)
++|...|++.. .| +..+|..+..++...|++++|.+.|++..+. .|+..........+...++.++|...+....
T Consensus 115 ~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 115 DAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 88888888876 33 4567777888888888888888888888774 3443322222223345677888888886654
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCChHHH--HHHHHH-hcCC-----CchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCC
Q 037592 212 KEYRIKPKIEHYNCMVDLLGRAGLLEEA--ETLIEN-ADCR-----HDSSLWEVLLGACTTFRNAHVAERVAKKIMELKP 283 (337)
Q Consensus 212 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A--~~~~~~-~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 283 (337)
.. .+++...+ .+ .....|+...+ .+.+.+ .... .....|..+...+.+.|++++|+..|+++.+.+|
T Consensus 193 ~~--~~~~~~~~-~~--~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 193 EK--LDKEQWGW-NI--VEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred hh--CCccccHH-HH--HHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 32 23332221 22 23334554433 222221 1111 1234677777888888888888888888888886
Q ss_pred Cc
Q 037592 284 DC 285 (337)
Q Consensus 284 ~~ 285 (337)
.+
T Consensus 268 ~~ 269 (296)
T PRK11189 268 YN 269 (296)
T ss_pred ch
Confidence 43
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.44 E-value=8.6e-11 Score=100.90 Aligned_cols=223 Identities=14% Similarity=0.109 Sum_probs=148.5
Q ss_pred HHHHHHcCCChhHHHHHHHHHhh----------cCcc-cHHHHHHHHHhhchhhhhHHHHHHHHHhh-----CC--CCch
Q 037592 58 LLQGYCQTGDFESVIRIFREMEE----------IDLF-SFGIVLRACAGLAALRLGKEVHCQYIRRS-----GC--KDVI 119 (337)
Q Consensus 58 l~~~~~~~g~~~~A~~~~~~~~~----------~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~--~~~~ 119 (337)
+...|...|+++.|+.++++..+ |... ..+.+...|...+++++|..+|++++..- .. .-..
T Consensus 205 La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~ 284 (508)
T KOG1840|consen 205 LAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAA 284 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 55555555555555555555544 1111 12234455666666666666666665531 11 1245
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhcCC----------CCcH-HhHHHHHHHHHhCCCHhHHHHHHHHHHhc---CCCCCH-
Q 037592 120 IESALVDLYAKCGCVDFAHQIFLQMP----------VRNL-ITWNSMISGFAQNGRGEEALRIFDDMTEG---GTKPDH- 184 (337)
Q Consensus 120 ~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~~p~~- 184 (337)
+++.|..+|.+.|++++|...+++.. .+.+ ..++.++..+...+++++|..++++..+. -+.++.
T Consensus 285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~ 364 (508)
T KOG1840|consen 285 TLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNV 364 (508)
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccch
Confidence 66667777888888877776666554 1222 24566777888889999999888876542 122222
Q ss_pred ---hHHHHHHHHHhhcCchhhHHHHHHHHHHhc----C-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHh-------c-
Q 037592 185 ---VSFIGVLSACSHMGLIDRGRKHFASMTKEY----R-IKP-KIEHYNCMVDLLGRAGLLEEAETLIENA-------D- 247 (337)
Q Consensus 185 ---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~- 247 (337)
.+++.+...|...|++++|.++++.++... | ..+ ....++.|...|.+.+++.+|.++|.+. |
T Consensus 365 ~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~ 444 (508)
T KOG1840|consen 365 NLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGP 444 (508)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCC
Confidence 467888889999999999999999887643 1 122 2456788888999999999999988762 2
Q ss_pred CCCc-hhHHHHHHHHHhcCCChhHHHHHHHHHHh
Q 037592 248 CRHD-SSLWEVLLGACTTFRNAHVAERVAKKIME 280 (337)
Q Consensus 248 ~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 280 (337)
..|+ ..+|..|...|...|+++.|+++...+..
T Consensus 445 ~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 445 DHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred CCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 2233 35688899999999999999999988874
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.3e-13 Score=77.81 Aligned_cols=50 Identities=32% Similarity=0.688 Sum_probs=42.9
Q ss_pred CcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhh
Q 037592 147 RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSH 196 (337)
Q Consensus 147 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 196 (337)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67888888888888888888888888888888888888888888888764
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=2e-10 Score=94.37 Aligned_cols=211 Identities=14% Similarity=0.097 Sum_probs=107.1
Q ss_pred hhhhhHHHHHHHHHhhC---CCCchhHHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHHH
Q 037592 98 ALRLGKEVHCQYIRRSG---CKDVIIESALVDLYAKCGCVDFAHQIFLQMP---VRNLITWNSMISGFAQNGRGEEALRI 171 (337)
Q Consensus 98 ~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~ 171 (337)
..+.++.-+.+++.... ......|..+...|.+.|++++|...|++.. +.+...|+.+...+...|++++|...
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 44445555555554321 1113445556666666666666666666554 23455666666666666666666666
Q ss_pred HHHHHhcCCCCC-HhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhc--C
Q 037592 172 FDDMTEGGTKPD-HVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENAD--C 248 (337)
Q Consensus 172 ~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~ 248 (337)
|++..+. .|+ ..++..+..++...|++++|.+.++..++. .|+..........+...++.++|...|++.- .
T Consensus 121 ~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 121 FDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 6666653 332 344455555566666666666666666543 2332211111122334456666666665421 1
Q ss_pred CCchhHHHHHHHHHhcCCChhHHHHHHHHHH-------hcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCC
Q 037592 249 RHDSSLWEVLLGACTTFRNAHVAERVAKKIM-------ELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGV 317 (337)
Q Consensus 249 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 317 (337)
.|+. |.. .......|+...+ ..+..+. ++.|+.+.+|..++..+.+.|++++|...|++..+.++
T Consensus 196 ~~~~--~~~-~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 196 DKEQ--WGW-NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred Cccc--cHH-HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 2221 211 1112223333332 2233332 23344445666666666666666666666666665443
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.8e-10 Score=94.15 Aligned_cols=289 Identities=12% Similarity=0.018 Sum_probs=198.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHc--ccCC-hhhHHHHHHHHHcCCChhHHHHHHHHHhhcCcc---cHHHHHHHHHhhc
Q 037592 24 ESSLVDMYGKCGLVDESHRVFDKM--LKKN-SVSSSALLQGYCQTGDFESVIRIFREMEEIDLF---SFGIVLRACAGLA 97 (337)
Q Consensus 24 ~~~l~~~~~~~~~~~~A~~~~~~~--~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~ 97 (337)
+....+-|.++|.+++|++.|.+. ..|+ +..|.....+|...|+|+++.+--.+.++.++. ++..-..++...|
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg 197 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLG 197 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhc
Confidence 455667788889999999999888 4556 667888889999999999999888888883332 4555566778888
Q ss_pred hhhhhHHHH------------------HHHH------------H-hhC--CCCchhHHHHHHHHHh---------cC---
Q 037592 98 ALRLGKEVH------------------CQYI------------R-RSG--CKDVIIESALVDLYAK---------CG--- 132 (337)
Q Consensus 98 ~~~~a~~~~------------------~~~~------------~-~~~--~~~~~~~~~l~~~~~~---------~g--- 132 (337)
++++|..-. ++.+ + .++ -|+.....+....+.. ..
T Consensus 198 ~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksD 277 (606)
T KOG0547|consen 198 KFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSD 277 (606)
T ss_pred cHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccch
Confidence 888775422 1111 0 011 0222111111111100 00
Q ss_pred -CHHHHHHHHhcCC--------------------CC-----cH------HhHHHHHHHHHhCCCHhHHHHHHHHHHhcCC
Q 037592 133 -CVDFAHQIFLQMP--------------------VR-----NL------ITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180 (337)
Q Consensus 133 -~~~~A~~~~~~~~--------------------~~-----~~------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 180 (337)
...++.+.+..-. .+ |. .+...-...+.-.|+.-.|..-|+..++...
T Consensus 278 a~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~ 357 (606)
T KOG0547|consen 278 AALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDP 357 (606)
T ss_pred hhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCc
Confidence 0111222111110 01 11 1111112233457888899999999888654
Q ss_pred CCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cCCC-chhHHHHH
Q 037592 181 KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DCRH-DSSLWEVL 258 (337)
Q Consensus 181 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l 258 (337)
.++. .|.-+...|...++.++.++.|+.+..-. +-++.+|..=.+++.-.+++++|..=|++. ...| +...|-.+
T Consensus 358 ~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld--p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl 434 (606)
T KOG0547|consen 358 AFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD--PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQL 434 (606)
T ss_pred ccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC--CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHH
Confidence 4333 26667778899999999999999995432 446778888899999999999999999985 4444 44556666
Q ss_pred HHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHh
Q 037592 259 LGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYS 315 (337)
Q Consensus 259 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 315 (337)
.-+..+.++++++...|++.++..|+.+..|+...+.+...++++.|.+.|+..++.
T Consensus 435 ~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 435 CCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 666678889999999999999999999999999999999999999999999988763
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.6e-09 Score=93.12 Aligned_cols=100 Identities=18% Similarity=0.151 Sum_probs=77.0
Q ss_pred HHHHHhcCChHHHHHHHHH-hcCCC-chhHHHHHHHHHhcCCChhHHHH--HHHHHHhcCCCccchHHHHHHHHHHcCCh
Q 037592 227 VDLLGRAGLLEEAETLIEN-ADCRH-DSSLWEVLLGACTTFRNAHVAER--VAKKIMELKPDCHLSYVLLDNVYRAVGRW 302 (337)
Q Consensus 227 ~~~~~~~g~~~~A~~~~~~-~~~~~-~~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 302 (337)
...+...|++++|.+.|.. +-..| ++....++...+.+.|+..-|.. ++..+.+++|.++..|..++..+.+.|+.
T Consensus 691 G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~ 770 (799)
T KOG4162|consen 691 GLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDS 770 (799)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccch
Confidence 3344445666666666654 34445 45567788889999999888888 99999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhCCccCCCCccee
Q 037592 303 NDAFKIRTLMKYSGVKKMPGKSWIE 327 (337)
Q Consensus 303 ~~A~~~~~~m~~~~~~~~~~~~~~~ 327 (337)
+.|.+.|+...+-... +|-..|..
T Consensus 771 ~~Aaecf~aa~qLe~S-~PV~pFs~ 794 (799)
T KOG4162|consen 771 KQAAECFQAALQLEES-NPVLPFSN 794 (799)
T ss_pred HHHHHHHHHHHhhccC-CCcccccc
Confidence 9999999988775543 35555544
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.40 E-value=8.5e-10 Score=89.53 Aligned_cols=296 Identities=10% Similarity=-0.041 Sum_probs=215.8
Q ss_pred CCchHhHHHHHHHHHh--cCChHHHHHHHHHc-----ccCChhhHHHHHHHHHcCCChhHHHHHHHHHhhcCcccHHH--
Q 037592 18 CGNVVVESSLVDMYGK--CGLVDESHRVFDKM-----LKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGI-- 88 (337)
Q Consensus 18 ~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-- 88 (337)
+|...+...-+.+++. .++...|...+-.+ ...|+.....+..++...|+.++|+..|++....|..+...
T Consensus 191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD 270 (564)
T KOG1174|consen 191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMD 270 (564)
T ss_pred CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHH
Confidence 3333333334444433 45555555544333 33478888999999999999999999999988744443322
Q ss_pred -HHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCC---CcHHhHHHHHHHHHhCCC
Q 037592 89 -VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV---RNLITWNSMISGFAQNGR 164 (337)
Q Consensus 89 -l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~ 164 (337)
-...+.+.|+++....+...+....- .+...|..-+.......+++.|+.+-++... .+...+-.-...+...|+
T Consensus 271 ~Ya~LL~~eg~~e~~~~L~~~Lf~~~~-~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R 349 (564)
T KOG1174|consen 271 LYAVLLGQEGGCEQDSALMDYLFAKVK-YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALER 349 (564)
T ss_pred HHHHHHHhccCHhhHHHHHHHHHhhhh-cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccc
Confidence 23345677888887777777766532 3334444455566778899999999998874 355566666688899999
Q ss_pred HhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHH-HHHHh-cCChHHHHHH
Q 037592 165 GEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMV-DLLGR-AGLLEEAETL 242 (337)
Q Consensus 165 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~-~g~~~~A~~~ 242 (337)
+++|.-.|+..... -+-+...|..++.+|...|.+.+|...-+...+.. +.+..+.+.+. ..+.- ..--++|.++
T Consensus 350 ~~~A~IaFR~Aq~L-ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~--~~sA~~LtL~g~~V~~~dp~~rEKAKkf 426 (564)
T KOG1174|consen 350 HTQAVIAFRTAQML-APYRLEIYRGLFHSYLAQKRFKEANALANWTIRLF--QNSARSLTLFGTLVLFPDPRMREKAKKF 426 (564)
T ss_pred hHHHHHHHHHHHhc-chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh--hcchhhhhhhcceeeccCchhHHHHHHH
Confidence 99999999998774 22467899999999999999999998888876533 45555555443 33332 3345789999
Q ss_pred HHH-hcCCCch-hHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCCc
Q 037592 243 IEN-ADCRHDS-SLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVK 318 (337)
Q Consensus 243 ~~~-~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 318 (337)
+++ +...|+- ...+.+...+...|..+.++.++++.+...|+ ......|++.+...+.+.+|+..|......+.+
T Consensus 427 ~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 427 AEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred HHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 987 5677764 34556667899999999999999999999999 689999999999999999999999887765554
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.2e-11 Score=88.74 Aligned_cols=164 Identities=17% Similarity=0.093 Sum_probs=101.4
Q ss_pred hHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 037592 151 TWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLL 230 (337)
Q Consensus 151 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 230 (337)
+...|.-.|...|+...|..-+++.++.... +..++..+...|.+.|+.+.|.+-|+.++... +-+..+.|.....+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~--p~~GdVLNNYG~FL 113 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLA--PNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC--CCccchhhhhhHHH
Confidence 3445556666677777777777666664221 33455566666666677777777666665321 23345666666666
Q ss_pred HhcCChHHHHHHHHHhcCCC----chhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHH
Q 037592 231 GRAGLLEEAETLIENADCRH----DSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAF 306 (337)
Q Consensus 231 ~~~g~~~~A~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 306 (337)
|..|++++|...|++.-..| -..+|..+.-+..+.|+++.|...|++.++.+|+.+.....+.....+.|++..|.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence 66677777777666542222 23346666666666677777777777777777776666666677777777777777
Q ss_pred HHHHHHHHhCC
Q 037592 307 KIRTLMKYSGV 317 (337)
Q Consensus 307 ~~~~~m~~~~~ 317 (337)
..++.....+.
T Consensus 194 ~~~~~~~~~~~ 204 (250)
T COG3063 194 LYLERYQQRGG 204 (250)
T ss_pred HHHHHHHhccc
Confidence 66666555544
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.2e-09 Score=85.22 Aligned_cols=297 Identities=10% Similarity=0.048 Sum_probs=221.0
Q ss_pred chHhHHHHHHHHHhcCChHHHHHHHHHcccCChhhHHHHH---HHHHcCCChhHHHHHHHHHhh--cCccc-HHHHHHHH
Q 037592 20 NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALL---QGYCQTGDFESVIRIFREMEE--IDLFS-FGIVLRAC 93 (337)
Q Consensus 20 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~---~~~~~~g~~~~A~~~~~~~~~--~~~~~-~~~l~~~~ 93 (337)
++.-.--|...+...|++..|+.-|...++-|+..|.++. ..|...|+..-|+.-+.+..+ ||... ...-...+
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhh
Confidence 4455566778889999999999999999888877776654 678999999999999999988 66532 23345577
Q ss_pred HhhchhhhhHHHHHHHHHhhCCCC--chhH------------HHHHHHHHhcCCHHHHHHHHhcCC--CC-cHHhHHHHH
Q 037592 94 AGLAALRLGKEVHCQYIRRSGCKD--VIIE------------SALVDLYAKCGCVDFAHQIFLQMP--VR-NLITWNSMI 156 (337)
Q Consensus 94 ~~~~~~~~a~~~~~~~~~~~~~~~--~~~~------------~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~l~ 156 (337)
.+.|.++.|..-|+.+++..+... ...+ ...+..+.-.|+...|++....+. .| |...|..-.
T Consensus 117 lK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Ra 196 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARA 196 (504)
T ss_pred hhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHH
Confidence 899999999999999998765211 1111 223344566789999999888877 33 778888889
Q ss_pred HHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHH----H---H--
Q 037592 157 SGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNC----M---V-- 227 (337)
Q Consensus 157 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----l---~-- 227 (337)
.+|...|++..|+.=++...+.... +..++.-+-..+...|+.+.++...++.+ .+.||...... | .
T Consensus 197 kc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECL---KldpdHK~Cf~~YKklkKv~K~ 272 (504)
T KOG0624|consen 197 KCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECL---KLDPDHKLCFPFYKKLKKVVKS 272 (504)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHH---ccCcchhhHHHHHHHHHHHHHH
Confidence 9999999999999888877665333 44455556666778899999999999887 45676432211 1 1
Q ss_pred ----HHHHhcCChHHHHHHHHH-hcCCCchh-----HHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHH
Q 037592 228 ----DLLGRAGLLEEAETLIEN-ADCRHDSS-----LWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297 (337)
Q Consensus 228 ----~~~~~~g~~~~A~~~~~~-~~~~~~~~-----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 297 (337)
......++|.++.+-.++ |...|... .+..+-.++...|++.+|++...++++..|++..++..-..+|.
T Consensus 273 les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l 352 (504)
T KOG0624|consen 273 LESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYL 352 (504)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHh
Confidence 122344566666666655 45555422 23344567889999999999999999999999999999999999
Q ss_pred HcCChhhHHHHHHHHHHhCCccC
Q 037592 298 AVGRWNDAFKIRTLMKYSGVKKM 320 (337)
Q Consensus 298 ~~g~~~~A~~~~~~m~~~~~~~~ 320 (337)
-...+++|+.-|+...+.+...+
T Consensus 353 ~dE~YD~AI~dye~A~e~n~sn~ 375 (504)
T KOG0624|consen 353 GDEMYDDAIHDYEKALELNESNT 375 (504)
T ss_pred hhHHHHHHHHHHHHHHhcCcccH
Confidence 99999999999999887665443
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.7e-09 Score=86.81 Aligned_cols=317 Identities=11% Similarity=0.076 Sum_probs=200.4
Q ss_pred chhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHccc--C-ChhhHHHHHHHHHcCCChhHHHHHHHHH
Q 037592 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLK--K-NSVSSSALLQGYCQTGDFESVIRIFREM 78 (337)
Q Consensus 2 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 78 (337)
++.|..+|+..+... ..+...|-.-+.+=.++..+..|..++++.+. | --..|.-.+..=-..|++..|.++|++-
T Consensus 89 ~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW 167 (677)
T KOG1915|consen 89 IQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERW 167 (677)
T ss_pred HHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 456777888777755 44666677777777777777888888777632 2 2223444444444567777777777776
Q ss_pred hh--cCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCC------CcHH
Q 037592 79 EE--IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV------RNLI 150 (337)
Q Consensus 79 ~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~ 150 (337)
.+ |+..+|.+.+..-.+.+.++.|..+|++.+-. .|++..|-..+..-.+.|....|..+|+.... .+..
T Consensus 168 ~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~ 245 (677)
T KOG1915|consen 168 MEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEI 245 (677)
T ss_pred HcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHH
Confidence 66 77777777777777777777777777777654 26677777777777777777777777766541 0112
Q ss_pred hHHHHHHHHHhCCCHhHHHHHHHHH--------------------------------------------HhcCCCCCHhH
Q 037592 151 TWNSMISGFAQNGRGEEALRIFDDM--------------------------------------------TEGGTKPDHVS 186 (337)
Q Consensus 151 ~~~~l~~~~~~~~~~~~a~~~~~~m--------------------------------------------~~~~~~p~~~~ 186 (337)
.+.++...=.++..++.|.-+|+-. ... -+.|-.+
T Consensus 246 lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~-np~nYDs 324 (677)
T KOG1915|consen 246 LFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK-NPYNYDS 324 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh-CCCCchH
Confidence 2333222222233333333333222 222 1234445
Q ss_pred HHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCH--HHHHHHHH--------HHHhcCChHHHHHHHHHh-cCCC-chhH
Q 037592 187 FIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKI--EHYNCMVD--------LLGRAGLLEEAETLIENA-DCRH-DSSL 254 (337)
Q Consensus 187 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~--------~~~~~g~~~~A~~~~~~~-~~~~-~~~~ 254 (337)
|--.+..-...|+.+...++|++++. +++|-. ..|...|- .-....+.+.+.++|+.. ..-| ...|
T Consensus 325 WfdylrL~e~~g~~~~Ire~yErAIa--nvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFt 402 (677)
T KOG1915|consen 325 WFDYLRLEESVGDKDRIRETYERAIA--NVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFT 402 (677)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHc--cCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccch
Confidence 55555555667888888888888854 555531 12222221 112467888888888763 3333 2233
Q ss_pred ----HHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCCccCCCCccee
Q 037592 255 ----WEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIE 327 (337)
Q Consensus 255 ----~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 327 (337)
|-.......++.+...|.+++..++...|. ..+|...+..-.+.++++....+|++..+.+. ..-..|+.
T Consensus 403 FaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK-~KlFk~YIelElqL~efDRcRkLYEkfle~~P--e~c~~W~k 476 (677)
T KOG1915|consen 403 FAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPK-DKLFKGYIELELQLREFDRCRKLYEKFLEFSP--ENCYAWSK 476 (677)
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCc-hhHHHHHHHHHHHHhhHHHHHHHHHHHHhcCh--HhhHHHHH
Confidence 334445566888999999999999999999 68888899999999999999999999988554 34445543
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1e-09 Score=82.29 Aligned_cols=196 Identities=13% Similarity=0.049 Sum_probs=123.9
Q ss_pred HHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCC
Q 037592 87 GIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP---VRNLITWNSMISGFAQNG 163 (337)
Q Consensus 87 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~ 163 (337)
..+.-.|...|+...|..-+++.++..+ .+..+|..+...|.+.|+.+.|.+.|++.. +.+..+.|...-.+|..|
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~DP-s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHDP-SYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCC
Confidence 3455566666666666666666666654 556666667777777777777777776655 334556666666667777
Q ss_pred CHhHHHHHHHHHHhcCCCC-CHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 037592 164 RGEEALRIFDDMTEGGTKP-DHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETL 242 (337)
Q Consensus 164 ~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 242 (337)
++++|...|++....-.-| -..+|..+.-+..+.|+.+.|...|++.++.. +-.+.+...+.....+.|++-.|..+
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d--p~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD--PQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC--cCCChHHHHHHHHHHhcccchHHHHH
Confidence 7777777777766542111 22355555555566777777777777775432 33345666667777777777777777
Q ss_pred HHHh--cCCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCc
Q 037592 243 IENA--DCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDC 285 (337)
Q Consensus 243 ~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 285 (337)
++.. +..++..+.-..|..-...|+.+.+.+.=..+....|.+
T Consensus 196 ~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s 240 (250)
T COG3063 196 LERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYS 240 (250)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 7654 233555555555666667777777777666666677763
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.6e-10 Score=99.72 Aligned_cols=217 Identities=17% Similarity=0.069 Sum_probs=131.3
Q ss_pred HHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHcccC----ChhhHHHHHHHHHcCCChhHHHHHHHHHhhcC
Q 037592 7 EVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKK----NSVSSSALLQGYCQTGDFESVIRIFREMEEID 82 (337)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 82 (337)
.++-.+...|+.|+-+||.++|.-||..|+.+.|- +|.-|.-. +...++.++.+....++.+.+. +|-
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 56778899999999999999999999999999998 88877222 2334445554444444444332 344
Q ss_pred cccHHHHHHHHHhhchhhh---hHHHHHHHHH----hhCC-------------C-CchhHHHHHHHHHhcCCHHHHHHHH
Q 037592 83 LFSFGIVLRACAGLAALRL---GKEVHCQYIR----RSGC-------------K-DVIIESALVDLYAKCGCVDFAHQIF 141 (337)
Q Consensus 83 ~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~----~~~~-------------~-~~~~~~~l~~~~~~~g~~~~A~~~~ 141 (337)
..+|..|..+|...||... ..+.+..... .|.- | ...--...+....-.|-|+.+++++
T Consensus 83 aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll 162 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLL 162 (1088)
T ss_pred hhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555554332 1111111100 0000 0 0000011222222333344444433
Q ss_pred hcCC----------------------------------CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHH
Q 037592 142 LQMP----------------------------------VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSF 187 (337)
Q Consensus 142 ~~~~----------------------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 187 (337)
..++ .+++.+|.+.+..-..+|+.+.|..++.+|++.|++.+..-|
T Consensus 163 ~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyF 242 (1088)
T KOG4318|consen 163 AKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYF 242 (1088)
T ss_pred hhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccc
Confidence 3222 367777888888888888888888888888888888777777
Q ss_pred HHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 037592 188 IGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235 (337)
Q Consensus 188 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 235 (337)
-.++.+ .++...+..+++.| ...|+.|+..|+...+..+...|+
T Consensus 243 wpLl~g---~~~~q~~e~vlrgm-qe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 243 WPLLLG---INAAQVFEFVLRGM-QEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred hhhhhc---CccchHHHHHHHHH-HHhcCCCCcchhHHHHHhhhcchh
Confidence 766644 67777777777777 555888888887766665555444
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.4e-09 Score=94.50 Aligned_cols=253 Identities=11% Similarity=0.054 Sum_probs=142.2
Q ss_pred HHcCCChhHHHHHHHHHhh--cCcc-cHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhc-----CC
Q 037592 62 YCQTGDFESVIRIFREMEE--IDLF-SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKC-----GC 133 (337)
Q Consensus 62 ~~~~g~~~~A~~~~~~~~~--~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~ 133 (337)
+...|++++|++.+++-.. +|.. ........+.+.|+.++|..+|..+++.++ .+..-|..+..+..-. ..
T Consensus 14 l~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP-dn~~Yy~~L~~~~g~~~~~~~~~ 92 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP-DNYDYYRGLEEALGLQLQLSDED 92 (517)
T ss_pred HHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHhhhccccccc
Confidence 4455666666666655444 3333 233344555566666666666666666654 4444444444444221 13
Q ss_pred HHHHHHHHhcCCC--CcHHhHHHHHHHHHhCCCH-hHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHH
Q 037592 134 VDFAHQIFLQMPV--RNLITWNSMISGFAQNGRG-EEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASM 210 (337)
Q Consensus 134 ~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~-~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 210 (337)
.+...++++++.. |...+...+.-.+.....+ ..+..++..+...|+++ +|+.+-..|......+-..+++...
T Consensus 93 ~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~ 169 (517)
T PF12569_consen 93 VEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEY 169 (517)
T ss_pred HHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHH
Confidence 4444555554441 2111111111111111122 23344555666666653 4444444444444444444444443
Q ss_pred HHhc-------------CCCCCH--HHHHHHHHHHHhcCChHHHHHHHHH-hcCCCc-hhHHHHHHHHHhcCCChhHHHH
Q 037592 211 TKEY-------------RIKPKI--EHYNCMVDLLGRAGLLEEAETLIEN-ADCRHD-SSLWEVLLGACTTFRNAHVAER 273 (337)
Q Consensus 211 ~~~~-------------~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~-~~~~~~l~~~~~~~g~~~~a~~ 273 (337)
.... .-+|+. .++..+.+.|-..|++++|++++++ +...|+ +..|..-...+-..|++++|.+
T Consensus 170 ~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~ 249 (517)
T PF12569_consen 170 VNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAE 249 (517)
T ss_pred HHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 2211 112333 2445667777888888888888886 455565 4455566677888888888888
Q ss_pred HHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCCc
Q 037592 274 VAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVK 318 (337)
Q Consensus 274 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 318 (337)
.++.+.++++.|...-...+..+.+.|+.++|.+++..+-+.+..
T Consensus 250 ~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~ 294 (517)
T PF12569_consen 250 AMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVD 294 (517)
T ss_pred HHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCC
Confidence 888888888887777777778888888888888888877766653
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.6e-10 Score=91.60 Aligned_cols=250 Identities=13% Similarity=0.099 Sum_probs=149.1
Q ss_pred HHHHHhcCChHHHHHHHHHcccC----ChhhHHHHHHHHHcCCChhHHHHHHHHHhhcCcccHHHHHHHHHhhchhhhhH
Q 037592 28 VDMYGKCGLVDESHRVFDKMLKK----NSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGK 103 (337)
Q Consensus 28 ~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 103 (337)
++-+.-.|++..++.-.+ .... +......+.+++...|+++.++.-+..-..|.......+...+....+-+.+.
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~~l 86 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKESAL 86 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHCHH
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHHHH
Confidence 344556788888886555 3222 23345566788888888776554443333355545544444443333444444
Q ss_pred HHHHHHHHhhCC-CCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCC
Q 037592 104 EVHCQYIRRSGC-KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKP 182 (337)
Q Consensus 104 ~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 182 (337)
.-+++.+..... .+..+.......+...|++++|++++.+. .+.......+..|.+.++++.|.+.++.|.+. ..
T Consensus 87 ~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~e 162 (290)
T PF04733_consen 87 EELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DE 162 (290)
T ss_dssp HHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SC
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CC
Confidence 444443333222 12223333345566678888888888766 45566667778888888888888888888763 33
Q ss_pred CHhHHHHHHHHHhh----cCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cC-CCchhHHH
Q 037592 183 DHVSFIGVLSACSH----MGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DC-RHDSSLWE 256 (337)
Q Consensus 183 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~ 256 (337)
| .+...++.++.. ...+.+|..+|+++.. ..++++.+.+.+..++...|++++|.+++++. .. +.++.+..
T Consensus 163 D-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~La 239 (290)
T PF04733_consen 163 D-SILTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLA 239 (290)
T ss_dssp C-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHH
T ss_pred c-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHH
Confidence 3 344445444432 2357888888888743 44677778888888888888888888888763 32 23455566
Q ss_pred HHHHHHhcCCCh-hHHHHHHHHHHhcCCCc
Q 037592 257 VLLGACTTFRNA-HVAERVAKKIMELKPDC 285 (337)
Q Consensus 257 ~l~~~~~~~g~~-~~a~~~~~~~~~~~p~~ 285 (337)
.++.+....|+. +.+.+.+.++....|++
T Consensus 240 Nliv~~~~~gk~~~~~~~~l~qL~~~~p~h 269 (290)
T PF04733_consen 240 NLIVCSLHLGKPTEAAERYLSQLKQSNPNH 269 (290)
T ss_dssp HHHHHHHHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHhCCCC
Confidence 666666666766 66677777777788874
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2e-10 Score=96.87 Aligned_cols=222 Identities=13% Similarity=0.045 Sum_probs=179.3
Q ss_pred HHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHh
Q 037592 90 LRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP---VRNLITWNSMISGFAQNGRGE 166 (337)
Q Consensus 90 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~ 166 (337)
..-+.+.|++.+|.-.|+..++..+ .+...|..|.......++-..|+..+++.. +.+..+.-.|.-+|...|.-.
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqdP-~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQDP-QHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhCh-HHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHH
Confidence 3345788999999999999999876 778999999999999999999999998887 346678888889999999999
Q ss_pred HHHHHHHHHHhcCCCC--------CHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHH
Q 037592 167 EALRIFDDMTEGGTKP--------DHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238 (337)
Q Consensus 167 ~a~~~~~~m~~~~~~p--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 238 (337)
+|++.++.-+...++- +...-.. ..+.....+.+..++|-++....+..+|+.+...|.-.|.-.|++++
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 9999998876543210 0000000 12222334455667777776776766888899999999999999999
Q ss_pred HHHHHHH-hcCCC-chhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHH
Q 037592 239 AETLIEN-ADCRH-DSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKY 314 (337)
Q Consensus 239 A~~~~~~-~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 314 (337)
|...|+. +..+| |...||.|...++...+..+|+..|++++++.|....+...|+.+|...|.+++|...|-+.+.
T Consensus 449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 9999997 45666 5678999999999999999999999999999999999999999999999999999998876654
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.5e-11 Score=95.58 Aligned_cols=250 Identities=13% Similarity=0.071 Sum_probs=169.5
Q ss_pred HHHHcCCChhHHHHHHHHHhh----cCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHH
Q 037592 60 QGYCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135 (337)
Q Consensus 60 ~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 135 (337)
+-+.-.|++..++.-.+ ... .+......+.+++...|+++.+.. ++... ..|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~-~~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKS-SSPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TT-SSCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccC-CChhHHHHHHHHHHHhCccchH
Confidence 34456788888886666 322 122345567788888888765443 33333 3466666666655555445666
Q ss_pred HHHHHHhcCC-CC----cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHH
Q 037592 136 FAHQIFLQMP-VR----NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASM 210 (337)
Q Consensus 136 ~A~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 210 (337)
.++.-+++.. .+ +..........+...|++++|++++.+. .+.......+..+.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7776666554 22 2223333345677889999999988643 35666777889999999999999999999
Q ss_pred HHhcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHhcC--CCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCC
Q 037592 211 TKEYRIKPKIEHYNCMVDLLGR----AGLLEEAETLIENADC--RHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPD 284 (337)
Q Consensus 211 ~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 284 (337)
+ ....| .+...+..++.. ...+.+|..+|+++.. .+++.+.+.+..++...|++++|.+++.++.+.+|+
T Consensus 158 -~--~~~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~ 233 (290)
T PF04733_consen 158 -Q--QIDED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN 233 (290)
T ss_dssp -H--CCSCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred -H--hcCCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence 4 33444 344445554443 3479999999999853 467788888889999999999999999999999999
Q ss_pred ccchHHHHHHHHHHcCCh-hhHHHHHHHHHHhCCccCCCCcceec
Q 037592 285 CHLSYVLLDNVYRAVGRW-NDAFKIRTLMKYSGVKKMPGKSWIEA 328 (337)
Q Consensus 285 ~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~~~~~~~~~~~~~~ 328 (337)
++.+...++-+....|+. +.+.+++.++... .|.+.|+.-
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~----~p~h~~~~~ 274 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQS----NPNHPLVKD 274 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH----TTTSHHHHH
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh----CCCChHHHH
Confidence 999999999999999998 5677788887764 355666543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.9e-08 Score=87.61 Aligned_cols=283 Identities=12% Similarity=0.091 Sum_probs=181.9
Q ss_pred HHHHHhcCChHHHHHHHHHcccC--C-hhhHHHHHHHHHcCCChhHHHHHHHHHhh--cCcccHHHHHHHHH-h-----h
Q 037592 28 VDMYGKCGLVDESHRVFDKMLKK--N-SVSSSALLQGYCQTGDFESVIRIFREMEE--IDLFSFGIVLRACA-G-----L 96 (337)
Q Consensus 28 ~~~~~~~~~~~~A~~~~~~~~~~--~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~-~-----~ 96 (337)
...+...|++++|++.++.-... | ..........+.+.|+.++|..+|..+.. |+...|...+..+. . .
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccccc
Confidence 45567889999999998776322 3 44566778889999999999999999988 77777666665554 1 1
Q ss_pred chhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHH-HHHHHHhcCCCCc-HHhHHHHHHHHHhCCCHhHHHHHHHH
Q 037592 97 AALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD-FAHQIFLQMPVRN-LITWNSMISGFAQNGRGEEALRIFDD 174 (337)
Q Consensus 97 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~ 174 (337)
.+.+...++|+++...-+ .......+.-.+.....+. .+...+..+.... +.+++.+-..|....+.+-..+++..
T Consensus 91 ~~~~~~~~~y~~l~~~yp--~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~ 168 (517)
T PF12569_consen 91 EDVEKLLELYDELAEKYP--RSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEE 168 (517)
T ss_pred ccHHHHHHHHHHHHHhCc--cccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHH
Confidence 246677788888776643 2222222222222212222 2333334444333 34566666666655555555555555
Q ss_pred HHhc----C----------CCCCHh--HHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCChH
Q 037592 175 MTEG----G----------TKPDHV--SFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPK-IEHYNCMVDLLGRAGLLE 237 (337)
Q Consensus 175 m~~~----~----------~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~ 237 (337)
.... + -+|+.. ++..+...|...|++++|+.++++++.. .|+ +..|..-...|-..|+++
T Consensus 169 ~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h---tPt~~ely~~KarilKh~G~~~ 245 (517)
T PF12569_consen 169 YVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH---TPTLVELYMTKARILKHAGDLK 245 (517)
T ss_pred HHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHCCCHH
Confidence 4322 1 123332 3344567777899999999999988653 454 677888888999999999
Q ss_pred HHHHHHHHhc-CC-CchhHHHHHHHHHhcCCChhHHHHHHHHHHhcC--CCcc-----chH--HHHHHHHHHcCChhhHH
Q 037592 238 EAETLIENAD-CR-HDSSLWEVLLGACTTFRNAHVAERVAKKIMELK--PDCH-----LSY--VLLDNVYRAVGRWNDAF 306 (337)
Q Consensus 238 ~A~~~~~~~~-~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--p~~~-----~~~--~~l~~~~~~~g~~~~A~ 306 (337)
+|.+.++... .. .|-..-+-.+..+.+.|++++|.+.+....+.+ |..- -.| ...+.+|.+.|++..|+
T Consensus 246 ~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~AL 325 (517)
T PF12569_consen 246 EAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLAL 325 (517)
T ss_pred HHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 9999998753 22 244444445566789999999999888876633 3210 022 34567889999999999
Q ss_pred HHHHHHHHh
Q 037592 307 KIRTLMKYS 315 (337)
Q Consensus 307 ~~~~~m~~~ 315 (337)
..|..+.+.
T Consensus 326 k~~~~v~k~ 334 (517)
T PF12569_consen 326 KRFHAVLKH 334 (517)
T ss_pred HHHHHHHHH
Confidence 888776553
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.7e-11 Score=71.38 Aligned_cols=50 Identities=30% Similarity=0.491 Sum_probs=45.1
Q ss_pred CCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 037592 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGR 232 (337)
Q Consensus 182 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 232 (337)
||..+|++++.+|++.|++++|.++|++| .+.|+.||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M-~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEM-KKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHcC
Confidence 78899999999999999999999999999 455999999999999998874
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.6e-08 Score=82.25 Aligned_cols=297 Identities=7% Similarity=-0.029 Sum_probs=181.7
Q ss_pred Cch-HhHHHHHHHHHhcCChHHHHHHHHHcc---cCChh---hHHHHHHHHHcCCChhHHHHHHHHHhh--cCcc-cHHH
Q 037592 19 GNV-VVESSLVDMYGKCGLVDESHRVFDKML---KKNSV---SSSALLQGYCQTGDFESVIRIFREMEE--IDLF-SFGI 88 (337)
Q Consensus 19 ~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~ 88 (337)
||- ..|..+...+...|+.+.+...+.... .++.. ........+...|++++|.+++++..+ |+.. .+..
T Consensus 3 p~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~ 82 (355)
T cd05804 3 PDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL 82 (355)
T ss_pred CccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 443 456666677777888888777776652 22222 233334567788999999999999887 5443 2222
Q ss_pred HHHHHHhhchhhhhHHHHHHHHHhhC--CC-CchhHHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhC
Q 037592 89 VLRACAGLAALRLGKEVHCQYIRRSG--CK-DVIIESALVDLYAKCGCVDFAHQIFLQMP---VRNLITWNSMISGFAQN 162 (337)
Q Consensus 89 l~~~~~~~~~~~~a~~~~~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~ 162 (337)
...+...++...+.....+...... .| .......+...+...|++++|...+++.. +.+...+..+...|...
T Consensus 83 -~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~ 161 (355)
T cd05804 83 -HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQ 161 (355)
T ss_pred -hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc
Confidence 2233333333333333333332211 12 23444556678899999999999999887 34566788889999999
Q ss_pred CCHhHHHHHHHHHHhcCCC-CCH--hHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHH-H--HHHHHHHhcCCh
Q 037592 163 GRGEEALRIFDDMTEGGTK-PDH--VSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY-N--CMVDLLGRAGLL 236 (337)
Q Consensus 163 ~~~~~a~~~~~~m~~~~~~-p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~--~l~~~~~~~g~~ 236 (337)
|++++|...+++....... |+. ..+..+...+...|++++|..+++.+.......+..... + .++..+...|..
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~ 241 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHV 241 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCC
Confidence 9999999999998775322 222 234457778889999999999999985322111222221 1 223333444543
Q ss_pred HHHHHH---HHHh-cC-CCchhHHH--HHHHHHhcCCChhHHHHHHHHHHhc-CC---C-----ccchHHHHHHHHHHcC
Q 037592 237 EEAETL---IENA-DC-RHDSSLWE--VLLGACTTFRNAHVAERVAKKIMEL-KP---D-----CHLSYVLLDNVYRAVG 300 (337)
Q Consensus 237 ~~A~~~---~~~~-~~-~~~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~~~-~p---~-----~~~~~~~l~~~~~~~g 300 (337)
..+.+. .... .. ......+. ....++...|+.+.|..++..+... .. . ..........++...|
T Consensus 242 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g 321 (355)
T cd05804 242 DVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEG 321 (355)
T ss_pred ChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcC
Confidence 333333 2211 11 11112222 3456678999999999999988762 11 1 1223344455677889
Q ss_pred ChhhHHHHHHHHHHhC
Q 037592 301 RWNDAFKIRTLMKYSG 316 (337)
Q Consensus 301 ~~~~A~~~~~~m~~~~ 316 (337)
++++|.+.+.+....+
T Consensus 322 ~~~~A~~~L~~al~~a 337 (355)
T cd05804 322 NYATALELLGPVRDDL 337 (355)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999998877654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.8e-08 Score=79.50 Aligned_cols=46 Identities=11% Similarity=-0.005 Sum_probs=26.3
Q ss_pred CchhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHc
Q 037592 1 RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKM 47 (337)
Q Consensus 1 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 47 (337)
++++|+.++..+.+.. .|+...+-.|..++.-.|.+.+|..+-...
T Consensus 72 dY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka 117 (557)
T KOG3785|consen 72 DYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKA 117 (557)
T ss_pred cHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhC
Confidence 3556666666666544 444455555555555566666666665554
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.7e-09 Score=96.95 Aligned_cols=215 Identities=11% Similarity=0.075 Sum_probs=167.2
Q ss_pred hHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCC--------CcHHhHHHHHHHHHhCCCHhHHHHHHH
Q 037592 102 GKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV--------RNLITWNSMISGFAQNGRGEEALRIFD 173 (337)
Q Consensus 102 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~ 173 (337)
..+-|++++...+ .+...|-..|......++.++|+++++++.. .-...|.++++.-..-|.-+...++|+
T Consensus 1443 saeDferlvrssP-NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFe 1521 (1710)
T KOG1070|consen 1443 SAEDFERLVRSSP-NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFE 1521 (1710)
T ss_pred CHHHHHHHHhcCC-CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHH
Confidence 3344555555443 5677888888888899999999999888772 123578888877777788888889999
Q ss_pred HHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH-hcCCC--
Q 037592 174 DMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIEN-ADCRH-- 250 (337)
Q Consensus 174 ~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~-- 250 (337)
++.+. .. ....|..|...|.+.+..++|.++++.|+++.+ .....|...+..+.+..+-+.|..++++ +..-|
T Consensus 1522 RAcqy-cd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~ 1597 (1710)
T KOG1070|consen 1522 RACQY-CD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQ 1597 (1710)
T ss_pred HHHHh-cc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchh
Confidence 98874 22 234567788888889999999999999988765 6677888889999999888889888876 33333
Q ss_pred -chhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCCccCC
Q 037592 251 -DSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMP 321 (337)
Q Consensus 251 -~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 321 (337)
........+..-.+.|+.+.+..+|+..+.-.|.....|+..++.-.+.|+.+.+..+|++....++.+..
T Consensus 1598 eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kk 1669 (1710)
T KOG1070|consen 1598 EHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKK 1669 (1710)
T ss_pred hhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhH
Confidence 44455566667788899999999999999888888889999999999999999999999999888887643
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.3e-08 Score=79.54 Aligned_cols=284 Identities=10% Similarity=0.031 Sum_probs=195.1
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHcccC---ChhhHHHHHHHHHcCCChhHHHHHHHHHhh--cCcccHHH-HHHHHHh
Q 037592 22 VVESSLVDMYGKCGLVDESHRVFDKMLKK---NSVSSSALLQGYCQTGDFESVIRIFREMEE--IDLFSFGI-VLRACAG 95 (337)
Q Consensus 22 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~-l~~~~~~ 95 (337)
.-+++.+..+.+..+++.|++++..-.++ +......|..+|-...++..|-++|+++-. |...-|.. -...+.+
T Consensus 11 Geftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 11 GEFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYK 90 (459)
T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHH
Confidence 34566777778889999999998877443 455678888999999999999999999877 55544433 3455677
Q ss_pred hchhhhhHHHHHHHHHhhCCCCchh--HHHHHHHHHhcCCHHHHHHHHhcCC-CCcHHhHHHHHHHHHhCCCHhHHHHHH
Q 037592 96 LAALRLGKEVHCQYIRRSGCKDVII--ESALVDLYAKCGCVDFAHQIFLQMP-VRNLITWNSMISGFAQNGRGEEALRIF 172 (337)
Q Consensus 96 ~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~ 172 (337)
.+.+..|.++...|... ++... ...-.......+++..+..++++.. ..+..+.+...-...+.|+++.|.+-|
T Consensus 91 A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkF 167 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKF 167 (459)
T ss_pred hcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHH
Confidence 78888888888777543 22111 1111223345788888899998888 456666666666677899999999999
Q ss_pred HHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCC-------------C------H--HHHHHHHH---
Q 037592 173 DDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKP-------------K------I--EHYNCMVD--- 228 (337)
Q Consensus 173 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------------~------~--~~~~~l~~--- 228 (337)
+...+-+--.....|+..+ ++.+.|+++.|.++..+++++ |++. | + ..-+.+++
T Consensus 168 qaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieR-G~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfN 245 (459)
T KOG4340|consen 168 QAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIER-GIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFN 245 (459)
T ss_pred HHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHh-hhhcCCccCccceeccCchhcccchHHHHHHHHHHHhh
Confidence 9988764333456677555 455678899999999888665 5421 1 1 11123333
Q ss_pred ----HHHhcCChHHHHHHHHHhc----CCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcC
Q 037592 229 ----LLGRAGLLEEAETLIENAD----CRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300 (337)
Q Consensus 229 ----~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 300 (337)
.+.+.|+++.|.+.+..|+ ...|+.|...+.-. --.+++-...+-+.-.++++|-.+.+|..++..|++..
T Consensus 246 LKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNe 324 (459)
T KOG4340|consen 246 LKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNE 324 (459)
T ss_pred hhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhH
Confidence 3456788888888888774 33466666554422 22345555666666677778876789999999999988
Q ss_pred ChhhHHHHHHH
Q 037592 301 RWNDAFKIRTL 311 (337)
Q Consensus 301 ~~~~A~~~~~~ 311 (337)
-++-|-.++-+
T Consensus 325 yf~lAADvLAE 335 (459)
T KOG4340|consen 325 YFDLAADVLAE 335 (459)
T ss_pred HHhHHHHHHhh
Confidence 88888777643
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.17 E-value=9.5e-08 Score=76.15 Aligned_cols=279 Identities=13% Similarity=0.029 Sum_probs=203.8
Q ss_pred chhhHHHHHHHHhcCCCCc-hHhHHHHHHHHHhcCChHHHHHHHHHcccCChhhHHH---HHHHHHcCCChhHHHHHHHH
Q 037592 2 LKQGKEVHAKVITLGLCGN-VVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSA---LLQGYCQTGDFESVIRIFRE 77 (337)
Q Consensus 2 ~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---l~~~~~~~g~~~~A~~~~~~ 77 (337)
+.+|+.-+...++. .|+ -.++-.-...|...|+-..|+.-|++.++.-+..+.+ -...+.++|.+++|..-|+.
T Consensus 54 ~sDALt~yHaAve~--dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~ 131 (504)
T KOG0624|consen 54 LSDALTHYHAAVEG--DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQ 131 (504)
T ss_pred HHHHHHHHHHHHcC--CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHH
Confidence 34566666666664 343 3445556678889999999999898885443333333 34568899999999999999
Q ss_pred Hhh--cCcc----------------cHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHH
Q 037592 78 MEE--IDLF----------------SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQ 139 (337)
Q Consensus 78 ~~~--~~~~----------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 139 (337)
... |+.. .....+..+...|+..-|+....++++..+ -+...+..-..+|...|+...|+.
T Consensus 132 vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~-Wda~l~~~Rakc~i~~~e~k~AI~ 210 (504)
T KOG0624|consen 132 VLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQP-WDASLRQARAKCYIAEGEPKKAIH 210 (504)
T ss_pred HHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc-chhHHHHHHHHHHHhcCcHHHHHH
Confidence 987 3321 123344556778999999999999999865 788888889999999999999998
Q ss_pred HHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHH----HH---------HHHHhhcCchhhH
Q 037592 140 IFLQMP---VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFI----GV---------LSACSHMGLIDRG 203 (337)
Q Consensus 140 ~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~----~l---------~~~~~~~~~~~~a 203 (337)
-++... .-+..++.-+...+...|+.+.++...++.++ +.||..... .+ +....+.++|.++
T Consensus 211 Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~c 288 (504)
T KOG0624|consen 211 DLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTEC 288 (504)
T ss_pred HHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 877665 44666777778888999999999999999888 566654221 11 1223445777778
Q ss_pred HHHHHHHHHhcCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHH-hcCCCc-hhHHHHHHHHHhcCCChhHHHHHHH
Q 037592 204 RKHFASMTKEYRIKPK-----IEHYNCMVDLLGRAGLLEEAETLIEN-ADCRHD-SSLWEVLLGACTTFRNAHVAERVAK 276 (337)
Q Consensus 204 ~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~ 276 (337)
....+..++. .|. ...+..+-.++...|++.+|++.-.+ +...|+ +.++.--..+|.-...++.|+.-|+
T Consensus 289 le~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye 365 (504)
T KOG0624|consen 289 LEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYE 365 (504)
T ss_pred HHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 7777777643 343 22334455677788999999998876 455555 6677777788999999999999999
Q ss_pred HHHhcCCCccch
Q 037592 277 KIMELKPDCHLS 288 (337)
Q Consensus 277 ~~~~~~p~~~~~ 288 (337)
.+.+.+|++..+
T Consensus 366 ~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 366 KALELNESNTRA 377 (504)
T ss_pred HHHhcCcccHHH
Confidence 999999886443
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.1e-07 Score=80.08 Aligned_cols=307 Identities=13% Similarity=0.134 Sum_probs=173.5
Q ss_pred hhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHcccC---ChhhHHHHHHHHHcCCChhHHHHHHHHHhh
Q 037592 4 QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKK---NSVSSSALLQGYCQTGDFESVIRIFREMEE 80 (337)
Q Consensus 4 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 80 (337)
..++..+.+++ +.+-...+.....-.+...|+-++|.......... +.+.|+.+.-.+-...++++|++.|..+..
T Consensus 25 kgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~ 103 (700)
T KOG1156|consen 25 KGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALK 103 (700)
T ss_pred hHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHh
Confidence 34444444444 22223334443444445556666666655554332 344566666656566666666666665554
Q ss_pred --cC-----------------------------------cccHHHHHHHHHhhchhhhhHHHHHHHHHhhC-CCCchhHH
Q 037592 81 --ID-----------------------------------LFSFGIVLRACAGLAALRLGKEVHCQYIRRSG-CKDVIIES 122 (337)
Q Consensus 81 --~~-----------------------------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~ 122 (337)
|| ...|...+.+..-.|+...|..+.++..+... .|+...+.
T Consensus 104 ~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e 183 (700)
T KOG1156|consen 104 IEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYE 183 (700)
T ss_pred cCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHH
Confidence 21 22355555666667777777777777766542 24444443
Q ss_pred HH------HHHHHhcCCHHHHHHHHhcCCCC--cHH-hHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHH-H
Q 037592 123 AL------VDLYAKCGCVDFAHQIFLQMPVR--NLI-TWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVL-S 192 (337)
Q Consensus 123 ~l------~~~~~~~g~~~~A~~~~~~~~~~--~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~-~ 192 (337)
.. .....+.|..++|.+.+..-... |.. .-..-...+.+.++.++|..++..++. ..||...|...+ .
T Consensus 184 ~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~--rnPdn~~Yy~~l~~ 261 (700)
T KOG1156|consen 184 HSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLE--RNPDNLDYYEGLEK 261 (700)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHh--hCchhHHHHHHHHH
Confidence 22 22345667777777777655522 222 223445677888999999999999888 457777666555 4
Q ss_pred HHhhcCchhhHH-HHHHHHHHhcC--CCC----------------------------CHHHHHHHHHHHHhcCChHHHHH
Q 037592 193 ACSHMGLIDRGR-KHFASMTKEYR--IKP----------------------------KIEHYNCMVDLLGRAGLLEEAET 241 (337)
Q Consensus 193 ~~~~~~~~~~a~-~~~~~~~~~~~--~~~----------------------------~~~~~~~l~~~~~~~g~~~~A~~ 241 (337)
++.+-.+.-++. .+|....+... ..| -+.++..+...|-. ..+.-
T Consensus 262 ~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~---p~k~~- 337 (700)
T KOG1156|consen 262 ALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKD---PEKVA- 337 (700)
T ss_pred HHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhc---hhHhH-
Confidence 443333333333 56665522110 000 01112222222211 11111
Q ss_pred HHHHh---------c------------CCCchhHHHH--HHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHH
Q 037592 242 LIENA---------D------------CRHDSSLWEV--LLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRA 298 (337)
Q Consensus 242 ~~~~~---------~------------~~~~~~~~~~--l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 298 (337)
+++++ + .+|+...|.. ++..+-..|+++.|..+.+.++...|.-+..|..-.+.+..
T Consensus 338 ~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH 417 (700)
T KOG1156|consen 338 FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKH 417 (700)
T ss_pred HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHh
Confidence 22221 0 2456665654 44567888899999999998888888877888888888888
Q ss_pred cCChhhHHHHHHHHHHhCC
Q 037592 299 VGRWNDAFKIRTLMKYSGV 317 (337)
Q Consensus 299 ~g~~~~A~~~~~~m~~~~~ 317 (337)
.|..++|...+++..+.+.
T Consensus 418 ~G~l~eAa~~l~ea~elD~ 436 (700)
T KOG1156|consen 418 AGLLDEAAAWLDEAQELDT 436 (700)
T ss_pred cCChHHHHHHHHHHHhccc
Confidence 8888888888888766544
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.1e-07 Score=77.00 Aligned_cols=109 Identities=5% Similarity=-0.009 Sum_probs=53.9
Q ss_pred chhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHcccCC--hhhHHHHHHHHHcCCChhHHHHHHHHHh
Q 037592 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKN--SVSSSALLQGYCQTGDFESVIRIFREME 79 (337)
Q Consensus 2 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 79 (337)
+++|.+.-..++..+ +-+...+..=+-++.+.+++++|+.+.+.-.... ..-+..-..+.-+.++.++|+..++-..
T Consensus 28 ~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~~~~ 106 (652)
T KOG2376|consen 28 YEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKTLKGLD 106 (652)
T ss_pred HHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHHHhccc
Confidence 566777777777665 3344455555566677777777775554332111 0101112233334555555555555322
Q ss_pred hcCcccHHHHHHHHHhhchhhhhHHHHHHHHH
Q 037592 80 EIDLFSFGIVLRACAGLAALRLGKEVHCQYIR 111 (337)
Q Consensus 80 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 111 (337)
..|..+...-...+.+.+++++|..+|+.+.+
T Consensus 107 ~~~~~ll~L~AQvlYrl~~ydealdiY~~L~k 138 (652)
T KOG2376|consen 107 RLDDKLLELRAQVLYRLERYDEALDIYQHLAK 138 (652)
T ss_pred ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 23333444444445555555555555555533
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.5e-08 Score=79.55 Aligned_cols=183 Identities=10% Similarity=-0.050 Sum_probs=122.8
Q ss_pred CCchhHHHHHHHHHhcCCHHHHHHHHhcCC--CCc-H---HhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHh--HH
Q 037592 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMP--VRN-L---ITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHV--SF 187 (337)
Q Consensus 116 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~-~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~ 187 (337)
.....+..++..+...|++++|...|+++. .|+ . .++..+..++...|++++|...++++.+........ ++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 345666777788888888888888888776 232 2 356777888888888888888888887753321111 34
Q ss_pred HHHHHHHhhc--------CchhhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHhcCCCchhHHHHH
Q 037592 188 IGVLSACSHM--------GLIDRGRKHFASMTKEYRIKPK-IEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVL 258 (337)
Q Consensus 188 ~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l 258 (337)
..+..++... |+.+.|.+.++.++.. .|+ ...+..+..... .... . ......+
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~----~~~~---~--------~~~~~~~ 172 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMDY----LRNR---L--------AGKELYV 172 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHHH----HHHH---H--------HHHHHHH
Confidence 4444445443 6778888888888654 333 222222211100 0000 0 0011245
Q ss_pred HHHHhcCCChhHHHHHHHHHHhcCCCc---cchHHHHHHHHHHcCChhhHHHHHHHHHHhC
Q 037592 259 LGACTTFRNAHVAERVAKKIMELKPDC---HLSYVLLDNVYRAVGRWNDAFKIRTLMKYSG 316 (337)
Q Consensus 259 ~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 316 (337)
...+.+.|++++|+..++++.+..|++ +..+..++.++...|++++|..+++.+....
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 566889999999999999999987764 4688999999999999999999999887653
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.10 E-value=6.3e-07 Score=76.25 Aligned_cols=265 Identities=12% Similarity=0.027 Sum_probs=170.9
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHHHHHhh--c-Cccc---HHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHH--
Q 037592 52 SVSSSALLQGYCQTGDFESVIRIFREMEE--I-DLFS---FGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESA-- 123 (337)
Q Consensus 52 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-- 123 (337)
...|..+...+...|+.+.+.+.+.+..+ + +... .......+...|++++|...+++.++..+ .+...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYP-RDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHhH
Confidence 45677777888888889988777777665 2 2222 22233456778999999999999998754 34444442
Q ss_pred -HHHHHHhcCCHHHHHHHHhcCCC--C-cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCc
Q 037592 124 -LVDLYAKCGCVDFAHQIFLQMPV--R-NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGL 199 (337)
Q Consensus 124 -l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 199 (337)
+.......+..+.+.+.+..... | .......+...+...|++++|...+++..+... .+...+..+...+...|+
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p-~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNP-DDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCC
Confidence 22222234566666666665332 2 233455666788999999999999999998632 245566777788999999
Q ss_pred hhhHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHhc-CCCchhHH----H--HHHHHHhcCCChhH
Q 037592 200 IDRGRKHFASMTKEYRIKPKI--EHYNCMVDLLGRAGLLEEAETLIENAD-CRHDSSLW----E--VLLGACTTFRNAHV 270 (337)
Q Consensus 200 ~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~----~--~l~~~~~~~g~~~~ 270 (337)
+++|..+++..+......++. ..|..+...+...|++++|..++++.. ..|....+ + .++.-+...|..+.
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~ 243 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDV 243 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCCh
Confidence 999999999986542222332 345678889999999999999999853 22311111 1 22233444454444
Q ss_pred HHHH--H-HHHHhcCCCccchH--HHHHHHHHHcCChhhHHHHHHHHHHhCCc
Q 037592 271 AERV--A-KKIMELKPDCHLSY--VLLDNVYRAVGRWNDAFKIRTLMKYSGVK 318 (337)
Q Consensus 271 a~~~--~-~~~~~~~p~~~~~~--~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 318 (337)
+.++ + .......|.....+ .....++...|+.++|...++.+......
T Consensus 244 ~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~ 296 (355)
T cd05804 244 GDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASS 296 (355)
T ss_pred HHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Confidence 4333 2 21111112212222 35667788889999999999998765433
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.1e-07 Score=78.33 Aligned_cols=224 Identities=10% Similarity=0.032 Sum_probs=116.4
Q ss_pred chhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcC-CHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCC--HhHHHH
Q 037592 97 AALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCG-CVDFAHQIFLQMP---VRNLITWNSMISGFAQNGR--GEEALR 170 (337)
Q Consensus 97 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~--~~~a~~ 170 (337)
+..++|+.+..++++..+ .+..+|+....++...| ++++++..++++. +.+..+|+.....+.+.|+ .++++.
T Consensus 51 e~serAL~lt~~aI~lnP-~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~ 129 (320)
T PLN02789 51 ERSPRALDLTADVIRLNP-GNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELE 129 (320)
T ss_pred CCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHH
Confidence 344444444444444433 33334444434444444 3455555554443 2233344433333333333 244555
Q ss_pred HHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc---CCh----HHHHHHH
Q 037592 171 IFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRA---GLL----EEAETLI 243 (337)
Q Consensus 171 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~~A~~~~ 243 (337)
+++++.+...+ +..+|+...-.+...|+++++++.++.+++.. +-+..+|+....++.+. |.. +++..+.
T Consensus 130 ~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d--~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~ 206 (320)
T PLN02789 130 FTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED--VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYT 206 (320)
T ss_pred HHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC--CCchhHHHHHHHHHHhccccccccccHHHHHHHH
Confidence 66565554322 44455555555555566666666666665432 33444555444444333 212 3344444
Q ss_pred HH-hcCCC-chhHHHHHHHHHhc----CCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcC-----------------
Q 037592 244 EN-ADCRH-DSSLWEVLLGACTT----FRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG----------------- 300 (337)
Q Consensus 244 ~~-~~~~~-~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g----------------- 300 (337)
.+ +...| +...|+.+...+.. .++..+|.+++.++....|+++.+...|+..|....
T Consensus 207 ~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~ 286 (320)
T PLN02789 207 IDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEEL 286 (320)
T ss_pred HHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhcccccc
Confidence 32 33333 45566666666655 234566778887777778887778888888887632
Q ss_pred -ChhhHHHHHHHHHHhCCccCCCCcce
Q 037592 301 -RWNDAFKIRTLMKYSGVKKMPGKSWI 326 (337)
Q Consensus 301 -~~~~A~~~~~~m~~~~~~~~~~~~~~ 326 (337)
..++|.++++.+. ...|-....|-
T Consensus 287 ~~~~~a~~~~~~l~--~~d~ir~~yw~ 311 (320)
T PLN02789 287 SDSTLAQAVCSELE--VADPMRRNYWA 311 (320)
T ss_pred ccHHHHHHHHHHHH--hhCcHHHHHHH
Confidence 2367888888883 45554555553
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.5e-07 Score=79.20 Aligned_cols=314 Identities=16% Similarity=0.087 Sum_probs=212.6
Q ss_pred CchhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHc--ccCC-hhhHHHHHHHHHcCCChhHHHHHHHH
Q 037592 1 RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKM--LKKN-SVSSSALLQGYCQTGDFESVIRIFRE 77 (337)
Q Consensus 1 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 77 (337)
+++.|...|-+.+... ++|.+.|+.-..+|+..|++++|.+=-.+. +.|+ ..-|.....++.-.|++++|+.-|.+
T Consensus 17 d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~ 95 (539)
T KOG0548|consen 17 DFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSE 95 (539)
T ss_pred cHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHH
Confidence 5778888998888876 558888999999999999999998777666 3444 44689999999999999999999988
Q ss_pred Hhh--cCcc-cHHHHHHHHHhh------------------------------------------------chhhhhHHHH
Q 037592 78 MEE--IDLF-SFGIVLRACAGL------------------------------------------------AALRLGKEVH 106 (337)
Q Consensus 78 ~~~--~~~~-~~~~l~~~~~~~------------------------------------------------~~~~~a~~~~ 106 (337)
-++ |+.. .+.-+..++... .+.+......
T Consensus 96 GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~ 175 (539)
T KOG0548|consen 96 GLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKAD 175 (539)
T ss_pred HhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHH
Confidence 776 3221 222222222000 0000011111
Q ss_pred HHHHHh--------h-------CCC------------C----------chhHHHHHHHHHhcCCHHHHHHHHhcCCC--C
Q 037592 107 CQYIRR--------S-------GCK------------D----------VIIESALVDLYAKCGCVDFAHQIFLQMPV--R 147 (337)
Q Consensus 107 ~~~~~~--------~-------~~~------------~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~ 147 (337)
-.+... + ..| + ..-...+.+...+..+++.|++.+..... .
T Consensus 176 ~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~~ 255 (539)
T KOG0548|consen 176 GQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELAT 255 (539)
T ss_pred HHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHhh
Confidence 000000 0 001 0 11234578888888899999988887763 3
Q ss_pred cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHH-------HHHHHhhcCchhhHHHHHHHHHHhcCCCCCH
Q 037592 148 NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIG-------VLSACSHMGLIDRGRKHFASMTKEYRIKPKI 220 (337)
Q Consensus 148 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 220 (337)
+..-++....+|...|.+.++...-....+.|.. ...-|+. +..++.+.++++.|+..|.+.+..+. .|+.
T Consensus 256 ~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~R-t~~~ 333 (539)
T KOG0548|consen 256 DITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHR-TPDL 333 (539)
T ss_pred hhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhc-CHHH
Confidence 4445666677788888888777777666665432 2222332 23355556778888888887765432 2221
Q ss_pred HH-------------------------HHHHHHHHHhcCChHHHHHHHHHh--cCCCchhHHHHHHHHHhcCCChhHHHH
Q 037592 221 EH-------------------------YNCMVDLLGRAGLLEEAETLIENA--DCRHDSSLWEVLLGACTTFRNAHVAER 273 (337)
Q Consensus 221 ~~-------------------------~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~ 273 (337)
.. ...-...+.+.|++..|.+.|.++ ..+.|...|..-.-+|.+.|.+..|++
T Consensus 334 ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~ 413 (539)
T KOG0548|consen 334 LSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALK 413 (539)
T ss_pred HHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHH
Confidence 11 111134566789999999999874 344567788888899999999999999
Q ss_pred HHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCC
Q 037592 274 VAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGV 317 (337)
Q Consensus 274 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 317 (337)
-.+..++++|+....|..-+.++....+|++|++.|++-.+...
T Consensus 414 Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp 457 (539)
T KOG0548|consen 414 DAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDP 457 (539)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 99999999999989999989999999999999999988777653
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.6e-07 Score=88.57 Aligned_cols=294 Identities=12% Similarity=0.005 Sum_probs=191.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHccc---C-----C----hhhHHHHHHHHHcCCChhHHHHHHHHHhh--cCc------c
Q 037592 25 SSLVDMYGKCGLVDESHRVFDKMLK---K-----N----SVSSSALLQGYCQTGDFESVIRIFREMEE--IDL------F 84 (337)
Q Consensus 25 ~~l~~~~~~~~~~~~A~~~~~~~~~---~-----~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~------~ 84 (337)
......+...|++++|...++.... . + ......+...+...|++++|...+++... +.. .
T Consensus 413 ~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 492 (903)
T PRK04841 413 LLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIV 492 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHH
Confidence 3445556678999999888876521 1 1 11122334556789999999999998766 222 1
Q ss_pred cHHHHHHHHHhhchhhhhHHHHHHHHHhhCCC-----CchhHHHHHHHHHhcCCHHHHHHHHhcCCC-------C----c
Q 037592 85 SFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-----DVIIESALVDLYAKCGCVDFAHQIFLQMPV-------R----N 148 (337)
Q Consensus 85 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~----~ 148 (337)
..+.+...+...|++++|...+++........ ...++..+...+...|++++|...+++... + .
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 572 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH 572 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence 33455566778899999999998887643211 123445667788899999999988876541 1 1
Q ss_pred HHhHHHHHHHHHhCCCHhHHHHHHHHHHhcC--CCCC--HhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHH-
Q 037592 149 LITWNSMISGFAQNGRGEEALRIFDDMTEGG--TKPD--HVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY- 223 (337)
Q Consensus 149 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~- 223 (337)
...+..+...+...|++++|...+++..... ..+. ...+..+...+...|+.+.|.+.+..+............+
T Consensus 573 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~ 652 (903)
T PRK04841 573 EFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWI 652 (903)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHh
Confidence 2234455667778899999999998875531 1122 2334445566778899999999988874321111111111
Q ss_pred ----HHHHHHHHhcCChHHHHHHHHHhcCC--Cchh----HHHHHHHHHhcCCChhHHHHHHHHHHhcC------CCccc
Q 037592 224 ----NCMVDLLGRAGLLEEAETLIENADCR--HDSS----LWEVLLGACTTFRNAHVAERVAKKIMELK------PDCHL 287 (337)
Q Consensus 224 ----~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------p~~~~ 287 (337)
...+..+...|+.+.|..++...... .... .+..+..++...|++++|...++++.... +....
T Consensus 653 ~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~ 732 (903)
T PRK04841 653 ANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNR 732 (903)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence 11224445688999999998764321 1111 13345567889999999999999987631 12234
Q ss_pred hHHHHHHHHHHcCChhhHHHHHHHHHHhCCc
Q 037592 288 SYVLLDNVYRAVGRWNDAFKIRTLMKYSGVK 318 (337)
Q Consensus 288 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 318 (337)
+...+..++...|+.++|...+.+..+..-.
T Consensus 733 ~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 733 NLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 6677788999999999999999998875543
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.3e-08 Score=86.16 Aligned_cols=209 Identities=13% Similarity=0.102 Sum_probs=108.5
Q ss_pred HHHHhcCChHHHHHHHHHcccC---ChhhHHHHHHHHHcCCChhHHHHHHHHHhhc---CcccHHHHHHHHHhhchhhhh
Q 037592 29 DMYGKCGLVDESHRVFDKMLKK---NSVSSSALLQGYCQTGDFESVIRIFREMEEI---DLFSFGIVLRACAGLAALRLG 102 (337)
Q Consensus 29 ~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a 102 (337)
..+.+.|++.+|.-.|+..+.. +...|--|.......++-..|+..+++..+. +..+...|...|...|.-..|
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHH
Confidence 3445667777777777666433 3556666766677777777777777777662 233455555566666666667
Q ss_pred HHHHHHHHHhhCCCCchhHHH----H---HHHHHhcCCHHHHHHHHhcCC-----CCcHHhHHHHHHHHHhCCCHhHHHH
Q 037592 103 KEVHCQYIRRSGCKDVIIESA----L---VDLYAKCGCVDFAHQIFLQMP-----VRNLITWNSMISGFAQNGRGEEALR 170 (337)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~----l---~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~ 170 (337)
...+...+...++ -...-.. . -..+.....+....++|-++. .+|+.....|.-.|...|++++|.+
T Consensus 373 l~~L~~Wi~~~p~-y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 373 LKMLDKWIRNKPK-YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHHhCcc-chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 7766666655431 0000000 0 000011111222233333222 2345555555555555566666666
Q ss_pred HHHHHHhcCCCC-CHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHH
Q 037592 171 IFDDMTEGGTKP-DHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPK-IEHYNCMVDLLGRAGLLEEAETLI 243 (337)
Q Consensus 171 ~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~ 243 (337)
.|+.++.. +| |...|+-|...++...+.++|+..|++++ .++|+ +.+...|.-+|...|.+++|.+.|
T Consensus 452 cf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rAL---qLqP~yVR~RyNlgIS~mNlG~ykEA~~hl 521 (579)
T KOG1125|consen 452 CFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRAL---QLQPGYVRVRYNLGISCMNLGAYKEAVKHL 521 (579)
T ss_pred HHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHH---hcCCCeeeeehhhhhhhhhhhhHHHHHHHH
Confidence 66655552 33 33455555555555555556666665554 33444 344455555555555555555544
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.07 E-value=9.4e-07 Score=76.22 Aligned_cols=65 Identities=11% Similarity=-0.033 Sum_probs=34.7
Q ss_pred ChhHHHHHHHHHHhcC--CCccchHHHHHHHHHH---cCChhhHHHHHHHHHHhCCccCCCCcceeccccc
Q 037592 267 NAHVAERVAKKIMELK--PDCHLSYVLLDNVYRA---VGRWNDAFKIRTLMKYSGVKKMPGKSWIEANSKL 332 (337)
Q Consensus 267 ~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~ 332 (337)
-++++.++|++.+.+. |+....|+..+.-+.+ ..+.+.|..+|++..+ |.+|...-+...+++.+
T Consensus 526 yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~l 595 (835)
T KOG2047|consen 526 YFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKL 595 (835)
T ss_pred HHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHH
Confidence 3444444444444422 3323344444443332 3467888888888887 66666555555544443
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.9e-06 Score=72.54 Aligned_cols=144 Identities=14% Similarity=0.085 Sum_probs=93.0
Q ss_pred CHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHH--------HHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 037592 164 RGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFA--------SMTKEYRIKPKIEHYNCMVDLLGRAGL 235 (337)
Q Consensus 164 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~g~ 235 (337)
.+.++..++....+....-........+......|+++.|.+++. .+. + +.-.+.+...+...+.+.++
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~-~--~~~~P~~V~aiv~l~~~~~~ 432 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSIL-E--AKHLPGTVGAIVALYYKIKD 432 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhh-h--hccChhHHHHHHHHHHhccC
Confidence 355566666555443221122344445566778899999999888 442 2 23334455666777777777
Q ss_pred hHHHHHHHHHh--------cCCC-chhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHH
Q 037592 236 LEEAETLIENA--------DCRH-DSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAF 306 (337)
Q Consensus 236 ~~~A~~~~~~~--------~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 306 (337)
-+.|..++.+. ...+ -..++..+...-.+.|+.++|..+++++.+.+|++..+...++.+|+. =+.+.|.
T Consensus 433 ~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~-~d~eka~ 511 (652)
T KOG2376|consen 433 NDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYAR-LDPEKAE 511 (652)
T ss_pred CccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHh-cCHHHHH
Confidence 66666666542 1111 122333444455677999999999999999999999999999999988 4567777
Q ss_pred HHHHH
Q 037592 307 KIRTL 311 (337)
Q Consensus 307 ~~~~~ 311 (337)
.+-..
T Consensus 512 ~l~k~ 516 (652)
T KOG2376|consen 512 SLSKK 516 (652)
T ss_pred HHhhc
Confidence 66433
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=9.9e-08 Score=73.27 Aligned_cols=120 Identities=9% Similarity=0.049 Sum_probs=80.9
Q ss_pred cCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cCCC-chhHHHHHHHH-HhcCCC--hhHH
Q 037592 197 MGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DCRH-DSSLWEVLLGA-CTTFRN--AHVA 271 (337)
Q Consensus 197 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~-~~~~g~--~~~a 271 (337)
.++.+++...++..++.. +.+...|..+...|...|++++|...|++. ...| +...+..+..+ +...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~--P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 455566666666665532 556677777777777777777777777763 2333 44455555554 355565 4777
Q ss_pred HHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCCc
Q 037592 272 ERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVK 318 (337)
Q Consensus 272 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 318 (337)
.++++++.+.+|+++.++..++..+.+.|++++|...|+++.+....
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 77777777777777777777777777777777777777777765544
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.03 E-value=6e-06 Score=71.46 Aligned_cols=312 Identities=13% Similarity=0.088 Sum_probs=193.3
Q ss_pred hhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHcc--cC------------------------------
Q 037592 3 KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKML--KK------------------------------ 50 (337)
Q Consensus 3 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~------------------------------ 50 (337)
++|....+...+.. ..+.+.|+.+.-.+....++++|++.|.... .+
T Consensus 58 ~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LL 136 (700)
T KOG1156|consen 58 EEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLL 136 (700)
T ss_pred HHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 45555555555543 3466778877777777788888888887761 21
Q ss_pred -----ChhhHHHHHHHHHcCCChhHHHHHHHHHhh-----cCcccHHHHH------HHHHhhchhhhhHHHHHHHHHhhC
Q 037592 51 -----NSVSSSALLQGYCQTGDFESVIRIFREMEE-----IDLFSFGIVL------RACAGLAALRLGKEVHCQYIRRSG 114 (337)
Q Consensus 51 -----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~~~~ 114 (337)
....|...+.++.-.|+...|.++++...+ |+...+.... ......|.++.|.+.+..-... +
T Consensus 137 ql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i 215 (700)
T KOG1156|consen 137 QLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-I 215 (700)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-H
Confidence 223455666677788999999999998887 4444444332 2345566667776666544332 2
Q ss_pred CCCchhHHHHHHHHHhcCCHHHHHHHHhcCC--CCcHHhHHH-HHHHHHhCCCHhHHH-HHHHHHHhcCC---CCCH---
Q 037592 115 CKDVIIESALVDLYAKCGCVDFAHQIFLQMP--VRNLITWNS-MISGFAQNGRGEEAL-RIFDDMTEGGT---KPDH--- 184 (337)
Q Consensus 115 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~-l~~~~~~~~~~~~a~-~~~~~m~~~~~---~p~~--- 184 (337)
......-..-...+.+.+++++|..++..+. .||...|.- +..++.+..+..++. .+|....+.-. .|-.
T Consensus 216 ~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlpl 295 (700)
T KOG1156|consen 216 VDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPL 295 (700)
T ss_pred HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccH
Confidence 1223333456778899999999999999988 455555544 444554343444444 66766655311 1110
Q ss_pred -----hHHHHHHHHHh----hcC-------------chhhHHHHHHHHHHhc-----CC------------CCCHHHH--
Q 037592 185 -----VSFIGVLSACS----HMG-------------LIDRGRKHFASMTKEY-----RI------------KPKIEHY-- 223 (337)
Q Consensus 185 -----~~~~~l~~~~~----~~~-------------~~~~a~~~~~~~~~~~-----~~------------~~~~~~~-- 223 (337)
.-+...+.-|. +.| +.... .++++.+... |. +|.+..|
T Consensus 296 svl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~-~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~ 374 (700)
T KOG1156|consen 296 SVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKV-AFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTL 374 (700)
T ss_pred HHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHh-HHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHH
Confidence 11111111111 111 11111 1333222110 11 4555444
Q ss_pred HHHHHHHHhcCChHHHHHHHHH-hcCCCchh-HHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCC
Q 037592 224 NCMVDLLGRAGLLEEAETLIEN-ADCRHDSS-LWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGR 301 (337)
Q Consensus 224 ~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 301 (337)
..+++.+-+.|+++.|..+++. ++..|+.. .|..-...+...|+++.|..++.++.+++-.|...-..-+.-..++++
T Consensus 375 y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~ 454 (700)
T KOG1156|consen 375 YFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANE 454 (700)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccc
Confidence 4567788899999999999997 46566553 233444678999999999999999999876644444455666778899
Q ss_pred hhhHHHHHHHHHHhCC
Q 037592 302 WNDAFKIRTLMKYSGV 317 (337)
Q Consensus 302 ~~~A~~~~~~m~~~~~ 317 (337)
.++|..+...+-+.|.
T Consensus 455 i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 455 IEEAEEVLSKFTREGF 470 (700)
T ss_pred cHHHHHHHHHhhhccc
Confidence 9999999988887775
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.5e-07 Score=76.48 Aligned_cols=283 Identities=11% Similarity=0.018 Sum_probs=195.5
Q ss_pred HHHHhcCChHHHHHHHHHcc---cCChhhHHHHHHHHHcCCChhHHHHHHHHHhh--cCc-ccHHHHHHHHHhhchhhhh
Q 037592 29 DMYGKCGLVDESHRVFDKML---KKNSVSSSALLQGYCQTGDFESVIRIFREMEE--IDL-FSFGIVLRACAGLAALRLG 102 (337)
Q Consensus 29 ~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~~~a 102 (337)
.+.+..|+++.|+..|-+.+ ++|...|..-..+|...|++++|++=-.+-++ |+. ..|+-...++.-.|++++|
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA 89 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEA 89 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHH
Confidence 45678899999999998873 33777888899999999999999988888877 664 3799999999999999999
Q ss_pred HHHHHHHHHhhCCCCchhHHHHHHHHHhcCC-------------------------------------------------
Q 037592 103 KEVHCQYIRRSGCKDVIIESALVDLYAKCGC------------------------------------------------- 133 (337)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------------------------------------------------- 133 (337)
+..|.+-++..+ .+...++.+.+++.....
T Consensus 90 ~~ay~~GL~~d~-~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d 168 (539)
T KOG0548|consen 90 ILAYSEGLEKDP-SNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLND 168 (539)
T ss_pred HHHHHHHhhcCC-chHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccccc
Confidence 999999988765 566777777766621100
Q ss_pred --HHHHHHHHhcCC----------------CC------------cH----------HhHHHHHHHHHhCCCHhHHHHHHH
Q 037592 134 --VDFAHQIFLQMP----------------VR------------NL----------ITWNSMISGFAQNGRGEEALRIFD 173 (337)
Q Consensus 134 --~~~A~~~~~~~~----------------~~------------~~----------~~~~~l~~~~~~~~~~~~a~~~~~ 173 (337)
+..|.-.+.... .| |. .....+.+...+..+++.|++.+.
T Consensus 169 ~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~ 248 (539)
T KOG0548|consen 169 PRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYA 248 (539)
T ss_pred HHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHH
Confidence 111111111000 01 00 123446666677788888888888
Q ss_pred HHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCC------CHHHHHHHHHHHHhcCChHHHHHHHHHhc
Q 037592 174 DMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKP------KIEHYNCMVDLLGRAGLLEEAETLIENAD 247 (337)
Q Consensus 174 ~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 247 (337)
...+.. .+..-++....+|...|.+......-...++. |... =...+..+..+|.+.++++.|...|++.-
T Consensus 249 ~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~-gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaL 325 (539)
T KOG0548|consen 249 KALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEV-GRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKAL 325 (539)
T ss_pred HHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHH-hHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHh
Confidence 887753 34444555567788888777666655555433 2111 01122234446777788888888887531
Q ss_pred ---CCCchhH-------------------------HHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHc
Q 037592 248 ---CRHDSSL-------------------------WEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAV 299 (337)
Q Consensus 248 ---~~~~~~~-------------------------~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 299 (337)
..|+..+ ...-...+.+.|++..|++.|.+++..+|+++..|....-+|.+.
T Consensus 326 te~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL 405 (539)
T KOG0548|consen 326 TEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKL 405 (539)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 1121111 111134578999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHh
Q 037592 300 GRWNDAFKIRTLMKYS 315 (337)
Q Consensus 300 g~~~~A~~~~~~m~~~ 315 (337)
|.+..|+.-.+...+.
T Consensus 406 ~~~~~aL~Da~~~ieL 421 (539)
T KOG0548|consen 406 GEYPEALKDAKKCIEL 421 (539)
T ss_pred hhHHHHHHHHHHHHhc
Confidence 9999999877666654
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.6e-08 Score=88.38 Aligned_cols=247 Identities=16% Similarity=0.075 Sum_probs=149.9
Q ss_pred ccCChhhHHHHHHHHHcCCChhHHHHHHHHHhh----cCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHH
Q 037592 48 LKKNSVSSSALLQGYCQTGDFESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESA 123 (337)
Q Consensus 48 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 123 (337)
+.||..||..+|.-||..|+.+.|- +|.-|.- .+...|+.++......++.+.+. .|...+|+.
T Consensus 21 i~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~ 88 (1088)
T KOG4318|consen 21 ILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTN 88 (1088)
T ss_pred CCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHH
Confidence 5566677777777777777777666 6666554 34445666666666666665554 366667777
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhc-CCCCCHhHHHHHHHHHhhcCchhh
Q 037592 124 LVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG-GTKPDHVSFIGVLSACSHMGLIDR 202 (337)
Q Consensus 124 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~~~~~~ 202 (337)
|..+|...|+... .+..++ -...++..+...|-......++..+.-. +.-||..+ .+.-....|.++.
T Consensus 89 Ll~ayr~hGDli~-fe~veq-------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~illlv~eglwaq 157 (1088)
T KOG4318|consen 89 LLKAYRIHGDLIL-FEVVEQ-------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AILLLVLEGLWAQ 157 (1088)
T ss_pred HHHHHHhccchHH-HHHHHH-------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHHHHHHHHHHHH
Confidence 7777777776654 222111 2223444555555555555555443221 23344433 2233345577777
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHhcCCCchhHHHHHHHHHhcCCChhHHHHHHHHHHh-
Q 037592 203 GRKHFASMTKEYRIKPKIEHYNCMVDLLGR-AGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME- 280 (337)
Q Consensus 203 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~- 280 (337)
+.+++..+.......|... .+.-... ...+++-..+-+.....|++.++..++.+-...|+.+.|..++.+|.+
T Consensus 158 llkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~ 233 (1088)
T KOG4318|consen 158 LLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEK 233 (1088)
T ss_pred HHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHc
Confidence 7777765532211112111 1222222 223444444444444578999999999999999999999999999998
Q ss_pred cCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCCccCCCCc
Q 037592 281 LKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKS 324 (337)
Q Consensus 281 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 324 (337)
.-|-.+-.|..|+-+ .+...-+..++.-|.+.|+.|+..+.
T Consensus 234 gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~ 274 (1088)
T KOG4318|consen 234 GFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQ 274 (1088)
T ss_pred CCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchh
Confidence 445544445555444 78888888999999999999876653
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.7e-06 Score=74.64 Aligned_cols=277 Identities=16% Similarity=0.172 Sum_probs=189.5
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHcccCC-------hhhHHHHHHHHHcCCChhHHHHHHHHHhh-cCc----------
Q 037592 22 VVESSLVDMYGKCGLVDESHRVFDKMLKKN-------SVSSSALLQGYCQTGDFESVIRIFREMEE-IDL---------- 83 (337)
Q Consensus 22 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~---------- 83 (337)
..|..+...|-+.|+++.|..+|++..+-+ ..+|-.-...=.+..+++.|+++.+.... |..
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~ 467 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSE 467 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCC
Confidence 357888899999999999999999985543 23455555556678889999999988766 322
Q ss_pred ----------ccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC----CCcH
Q 037592 84 ----------FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP----VRNL 149 (337)
Q Consensus 84 ----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~ 149 (337)
..|+..++.-...|-++....+|++++...+ .++.+.......+-...-++++.+++++-. -|++
T Consensus 468 pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLri-aTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v 546 (835)
T KOG2047|consen 468 PVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRI-ATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNV 546 (835)
T ss_pred cHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccH
Confidence 2355556666667788889999999998877 555555555666667777899999999877 3444
Q ss_pred -HhHHHHHHHHH---hCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHH--HhhcCchhhHHHHHHHHHHhcCCCCC--HH
Q 037592 150 -ITWNSMISGFA---QNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSA--CSHMGLIDRGRKHFASMTKEYRIKPK--IE 221 (337)
Q Consensus 150 -~~~~~l~~~~~---~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~--~~ 221 (337)
..|+..+.-+. .....+.|..+|++.++ |++|...-+.-++.+ --+.|....|+.+++++.. ++++. ..
T Consensus 547 ~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a~~l~ 623 (835)
T KOG2047|consen 547 YDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEAQRLD 623 (835)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHHH
Confidence 35666554443 34578999999999998 677765543333322 2356889999999999843 45544 35
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHH-hcCCCchhHHHHHH---HHHhcCCChhHHHHHHHHHHhc-CCC-ccchHHHHHHH
Q 037592 222 HYNCMVDLLGRAGLLEEAETLIEN-ADCRHDSSLWEVLL---GACTTFRNAHVAERVAKKIMEL-KPD-CHLSYVLLDNV 295 (337)
Q Consensus 222 ~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~l~---~~~~~~g~~~~a~~~~~~~~~~-~p~-~~~~~~~l~~~ 295 (337)
.|+..|.--...--+.....+|++ +..-|+...-...+ ..-.+.|..+.|..++.-..++ +|. ++..|...=..
T Consensus 624 myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~F 703 (835)
T KOG2047|consen 624 MYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEF 703 (835)
T ss_pred HHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHH
Confidence 667666544444344455556665 23445554443333 4467889999999999888884 444 24456676667
Q ss_pred HHHcCCh
Q 037592 296 YRAVGRW 302 (337)
Q Consensus 296 ~~~~g~~ 302 (337)
-.+.|+-
T Consensus 704 EvrHGne 710 (835)
T KOG2047|consen 704 EVRHGNE 710 (835)
T ss_pred HHhcCCH
Confidence 7777873
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.00 E-value=7.4e-07 Score=68.70 Aligned_cols=259 Identities=15% Similarity=0.072 Sum_probs=150.2
Q ss_pred CCchHhHHHHHHHHHhcCChHHHHHHHHHc-cc-CChhhHHHHHHHHHcCCChhHHHHHHHHHhhcCcccHHHHHHHHHh
Q 037592 18 CGNVVVESSLVDMYGKCGLVDESHRVFDKM-LK-KNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAG 95 (337)
Q Consensus 18 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 95 (337)
.|+...|+ ++-+.-.|.+..++..-... .. .+...-.-+.++|...|++.....-...-..|.......+......
T Consensus 7 g~~d~LF~--iRn~fY~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~eI~~~~~~~lqAvr~~a~~~~~ 84 (299)
T KOG3081|consen 7 GPEDELFN--IRNYFYLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISEIKEGKATPLQAVRLLAEYLEL 84 (299)
T ss_pred CcchhHHH--HHHHHHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHcccccccccccccccCChHHHHHHHHHHhhC
Confidence 34444454 55666678888887766554 22 2344444556777777776654443333222332233333333333
Q ss_pred hchhhhh-HHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHH
Q 037592 96 LAALRLG-KEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDD 174 (337)
Q Consensus 96 ~~~~~~a-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 174 (337)
-++.++- .++.+.+.......+......-...|++.|++++|++...... +....-.=...+.+..+.+-|.+.+++
T Consensus 85 e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 85 ESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred cchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333332 3344444444333333334444556788888888888887743 333333334455667778888888888
Q ss_pred HHhcCCCCCHhHHHHHHHHHhh----cCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh--cC
Q 037592 175 MTEGGTKPDHVSFIGVLSACSH----MGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA--DC 248 (337)
Q Consensus 175 m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~ 248 (337)
|.+. .+..|.+.|..++.+ .+.+..|.-+|+++.. ..+|++.+.+.+..++...|++++|..++++. ..
T Consensus 163 mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 163 MQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred HHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 8762 255666666666543 3567788888888843 35788888888887888888888888888764 23
Q ss_pred CCchhHHHHHHHHHhcCCCh-hHHHHHHHHHHhcCCCc
Q 037592 249 RHDSSLWEVLLGACTTFRNA-HVAERVAKKIMELKPDC 285 (337)
Q Consensus 249 ~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~p~~ 285 (337)
..++.+...++.+-...|.. +.-.+...+.....|..
T Consensus 238 ~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h 275 (299)
T KOG3081|consen 238 AKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEH 275 (299)
T ss_pred CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcc
Confidence 33455555555554445544 33445666666666764
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.9e-07 Score=72.57 Aligned_cols=309 Identities=13% Similarity=0.078 Sum_probs=165.2
Q ss_pred CchhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHcc---cCChhhHHHHHHHHHcCCChhHHHHHHHH
Q 037592 1 RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKML---KKNSVSSSALLQGYCQTGDFESVIRIFRE 77 (337)
Q Consensus 1 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 77 (337)
+++-|..+++.-...+-.....+---+..++...|++++|...+..+. .++...+-.|.-++.-.|.+.+|..+-.+
T Consensus 37 DytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~k 116 (557)
T KOG3785|consen 37 DYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEK 116 (557)
T ss_pred cchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhh
Confidence 356677777776655433333344445677889999999999998873 33455566666666666677777666655
Q ss_pred Hhh---------------cCccc--------------HHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHH-HHHH
Q 037592 78 MEE---------------IDLFS--------------FGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESA-LVDL 127 (337)
Q Consensus 78 ~~~---------------~~~~~--------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~ 127 (337)
..+ .|..- -.++.......-.+++|+++|.+.+..++ .....|. +.-+
T Consensus 117 a~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~--ey~alNVy~ALC 194 (557)
T KOG3785|consen 117 APKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNP--EYIALNVYMALC 194 (557)
T ss_pred CCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCh--hhhhhHHHHHHH
Confidence 433 11111 11233333334466777777777766542 2222222 2223
Q ss_pred HHhcCCHHHHHHHHhcCC--------------------------------------------------------------
Q 037592 128 YAKCGCVDFAHQIFLQMP-------------------------------------------------------------- 145 (337)
Q Consensus 128 ~~~~g~~~~A~~~~~~~~-------------------------------------------------------------- 145 (337)
|.+..-++-+.++++--.
T Consensus 195 yyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgAL 274 (557)
T KOG3785|consen 195 YYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGAL 274 (557)
T ss_pred HHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHH
Confidence 344333333333222110
Q ss_pred --CC-----cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcC-------chhhHHHHHHHHH
Q 037592 146 --VR-----NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMG-------LIDRGRKHFASMT 211 (337)
Q Consensus 146 --~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~ 211 (337)
-| =+.+-..|+--|.+.++..+|..+.+++.- ..|-......+. +...| .+.-|.+.|+..-
T Consensus 275 qVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv--~aalGQe~gSreHlKiAqqffqlVG 350 (557)
T KOG3785|consen 275 QVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVV--FAALGQETGSREHLKIAQQFFQLVG 350 (557)
T ss_pred HhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHH--HHHhhhhcCcHHHHHHHHHHHHHhc
Confidence 00 011222344456677888888777665421 222222222222 11222 1333444443321
Q ss_pred -----------------------------------HhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhc---CCCchh
Q 037592 212 -----------------------------------KEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENAD---CRHDSS 253 (337)
Q Consensus 212 -----------------------------------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~ 253 (337)
+..-...|.. -..+.++++..|++.+|+++|-.+. ++ |..
T Consensus 351 ~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~F-n~N~AQAk~atgny~eaEelf~~is~~~ik-n~~ 428 (557)
T KOG3785|consen 351 ESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDF-NLNLAQAKLATGNYVEAEELFIRISGPEIK-NKI 428 (557)
T ss_pred ccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchh-hhHHHHHHHHhcChHHHHHHHhhhcChhhh-hhH
Confidence 1111111222 2245677778889999999887653 33 444
Q ss_pred HHHH-HHHHHhcCCChhHHHHHHHHHHhcCCCccch-HHHHHHHHHHcCChhhHHHHHHHHHHhCCcc
Q 037592 254 LWEV-LLGACTTFRNAHVAERVAKKIMELKPDCHLS-YVLLDNVYRAVGRWNDAFKIRTLMKYSGVKK 319 (337)
Q Consensus 254 ~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 319 (337)
+|.+ +..+|...++++.|+.++-++ -.|..... ...+..-|.+++.+--|-+.|+.+...+..|
T Consensus 429 ~Y~s~LArCyi~nkkP~lAW~~~lk~--~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 429 LYKSMLARCYIRNKKPQLAWDMMLKT--NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHhc--CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 5544 457788999999887776433 23433332 3344567888888888888888887755543
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.4e-07 Score=75.17 Aligned_cols=179 Identities=14% Similarity=0.072 Sum_probs=118.9
Q ss_pred chHhHHHHHHHHHhcCChHHHHHHHHHccc--CC-h---hhHHHHHHHHHcCCChhHHHHHHHHHhh--cCcc----cHH
Q 037592 20 NVVVESSLVDMYGKCGLVDESHRVFDKMLK--KN-S---VSSSALLQGYCQTGDFESVIRIFREMEE--IDLF----SFG 87 (337)
Q Consensus 20 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~----~~~ 87 (337)
....+..++..+...|++++|...|+++.. |+ . .++..+..++...|++++|+..++++.+ |+.. ++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 345566677778888888888888887743 22 1 3567777888888888888888888877 5433 244
Q ss_pred HHHHHHHhh--------chhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHH
Q 037592 88 IVLRACAGL--------AALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGF 159 (337)
Q Consensus 88 ~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~ 159 (337)
.+..++... |++++|.+.++.+++..+ .+...+..+..... ..... ......+...|
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~a~~~~~~----~~~~~----------~~~~~~~a~~~ 176 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYP-NSEYAPDAKKRMDY----LRNRL----------AGKELYVARFY 176 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCC-CChhHHHHHHHHHH----HHHHH----------HHHHHHHHHHH
Confidence 445555543 677888888888877654 22222222211110 00000 01123566778
Q ss_pred HhCCCHhHHHHHHHHHHhcCC-CC-CHhHHHHHHHHHhhcCchhhHHHHHHHHHHh
Q 037592 160 AQNGRGEEALRIFDDMTEGGT-KP-DHVSFIGVLSACSHMGLIDRGRKHFASMTKE 213 (337)
Q Consensus 160 ~~~~~~~~a~~~~~~m~~~~~-~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 213 (337)
...|++++|+..+++..+... .| ....+..+..++...|++++|..+++.+..+
T Consensus 177 ~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 177 LKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 899999999999999887532 12 3457778889999999999999999888543
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.8e-07 Score=81.63 Aligned_cols=210 Identities=11% Similarity=-0.008 Sum_probs=155.2
Q ss_pred HHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC--CCcHHhHHHHHHHHHhCCCH
Q 037592 88 IVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP--VRNLITWNSMISGFAQNGRG 165 (337)
Q Consensus 88 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~ 165 (337)
.+...+...|-...|..+++++.. |...+.+|...|+..+|..+..+-. +||+..|..+........-+
T Consensus 403 ~laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~y 473 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLY 473 (777)
T ss_pred HHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHH
Confidence 455666777777777777766543 4557778888888888888776655 56777788887777777777
Q ss_pred hHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 037592 166 EEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIEN 245 (337)
Q Consensus 166 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 245 (337)
++|.++.+..-.. +-..+.....+.+++.++.+.++.-++-. +....+|..+..+..+.++++.|.+.|..
T Consensus 474 EkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n--plq~~~wf~~G~~ALqlek~q~av~aF~r 544 (777)
T KOG1128|consen 474 EKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN--PLQLGTWFGLGCAALQLEKEQAAVKAFHR 544 (777)
T ss_pred HHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC--ccchhHHHhccHHHHHHhhhHHHHHHHHH
Confidence 8888777664321 11122222334688888888888776543 44567888888888889999999988876
Q ss_pred -hcCCC-chhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHh
Q 037592 246 -ADCRH-DSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYS 315 (337)
Q Consensus 246 -~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 315 (337)
....| +...||.+-.+|.+.|+-.+|...+.++.+.+-.+...|...+-...+.|.+++|++.+.++.+.
T Consensus 545 cvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 545 CVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 33344 56679999999999999999999999999877666778888888888899999999998888754
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.6e-07 Score=84.66 Aligned_cols=230 Identities=10% Similarity=0.068 Sum_probs=152.5
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHHhh--cCccc-HHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHH
Q 037592 51 NSVSSSALLQGYCQTGDFESVIRIFREMEE--IDLFS-FGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDL 127 (337)
Q Consensus 51 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 127 (337)
+...|..|+..+...+++++|.++.+...+ |+... |..+...+.+.++...+..+ .+...
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~--------------- 92 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDS--------------- 92 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhh---------------
Confidence 567788999999999999999999998777 65554 44444466667776666555 33332
Q ss_pred HHhcCCHHHHHHHHhcCC--CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHH
Q 037592 128 YAKCGCVDFAHQIFLQMP--VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205 (337)
Q Consensus 128 ~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 205 (337)
.....++.-+..+...+. ..+..++..++.+|-+.|+.++|..+|+++.+.. +-|....+.+...|+.. ++++|.+
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~ 170 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAIT 170 (906)
T ss_pred cccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHH
Confidence 222222222222222222 1233467778888888899999999999888865 33667788888888877 8888888
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh----------------------cCCCchhHHHHHHHHHh
Q 037592 206 HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA----------------------DCRHDSSLWEVLLGACT 263 (337)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----------------------~~~~~~~~~~~l~~~~~ 263 (337)
++..++.. +...+++.++.++|+++ +..--+.++..+-..|.
T Consensus 171 m~~KAV~~----------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~ 234 (906)
T PRK14720 171 YLKKAIYR----------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYK 234 (906)
T ss_pred HHHHHHHH----------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHh
Confidence 88887643 33333444444444432 22223444555667788
Q ss_pred cCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHH-HhCCc
Q 037592 264 TFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMK-YSGVK 318 (337)
Q Consensus 264 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~~~~ 318 (337)
..+++++++.+++.+++.+|.+..+...++.+|. +.+.. ...|++.. -.|+.
T Consensus 235 ~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~s~l~ 287 (906)
T PRK14720 235 ALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKD-HSLLEDYLKMSDIG 287 (906)
T ss_pred hhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccC-cchHHHHHHHhccc
Confidence 9999999999999999999999999999999887 34444 44444333 33444
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.2e-06 Score=70.67 Aligned_cols=227 Identities=11% Similarity=0.021 Sum_probs=132.7
Q ss_pred HHHHcCCChhHHHHHHHHHhh--cCcc-cHHHHHHHHHhhc-hhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCH-
Q 037592 60 QGYCQTGDFESVIRIFREMEE--IDLF-SFGIVLRACAGLA-ALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCV- 134 (337)
Q Consensus 60 ~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~- 134 (337)
..+...++.++|+.++.++.+ |+.. +|+....++...+ ++++++..++++++.++ .+..+|+...-++.+.|+.
T Consensus 45 a~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l~~~~ 123 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKLGPDA 123 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHcCchh
Confidence 344556677777777777776 3322 3444444555555 46777777777777655 4555666555555555542
Q ss_pred -HHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhc---Cc----hhhH
Q 037592 135 -DFAHQIFLQMP---VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHM---GL----IDRG 203 (337)
Q Consensus 135 -~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~---~~----~~~a 203 (337)
++++.+++++. +.+..+|+...-++...|+++++++.++++++.++. +...|+.....+.+. |. .+..
T Consensus 124 ~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 124 ANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred hHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHH
Confidence 55666666665 345667777777777777788888888888776544 444555444333333 22 2345
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhc----CChHHHHHHHHHh-cCCC-chhHHHHHHHHHhcCC-----------
Q 037592 204 RKHFASMTKEYRIKPKIEHYNCMVDLLGRA----GLLEEAETLIENA-DCRH-DSSLWEVLLGACTTFR----------- 266 (337)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g----------- 266 (337)
..+...++... +-|...|+.+...+... ++..+|.+++.+. ...| ++.....|+..|+...
T Consensus 203 l~y~~~aI~~~--P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~ 280 (320)
T PLN02789 203 LKYTIDAILAN--PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVD 280 (320)
T ss_pred HHHHHHHHHhC--CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhh
Confidence 66665554432 45567777777777663 3345576666653 2222 4455566666665422
Q ss_pred -------ChhHHHHHHHHHHhcCCCccchHH
Q 037592 267 -------NAHVAERVAKKIMELKPDCHLSYV 290 (337)
Q Consensus 267 -------~~~~a~~~~~~~~~~~p~~~~~~~ 290 (337)
..+.|.+++..+.+.+|-....|.
T Consensus 281 ~~~~~~~~~~~a~~~~~~l~~~d~ir~~yw~ 311 (320)
T PLN02789 281 TLAEELSDSTLAQAVCSELEVADPMRRNYWA 311 (320)
T ss_pred ccccccccHHHHHHHHHHHHhhCcHHHHHHH
Confidence 235677777777556666433333
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.93 E-value=5e-07 Score=69.60 Aligned_cols=255 Identities=11% Similarity=0.052 Sum_probs=164.6
Q ss_pred HHcCCChhHHHHHHHHHhh--cCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHH
Q 037592 62 YCQTGDFESVIRIFREMEE--IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQ 139 (337)
Q Consensus 62 ~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 139 (337)
+.-.|++..++..-..... .+...-..+.++|...|++.....-... |-.|.......+......-++.+.-+.
T Consensus 18 ~fY~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~eI~~----~~~~~lqAvr~~a~~~~~e~~~~~~~~ 93 (299)
T KOG3081|consen 18 YFYLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISEIKE----GKATPLQAVRLLAEYLELESNKKSILA 93 (299)
T ss_pred HHHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHccccccccccccc----ccCChHHHHHHHHHHhhCcchhHHHHH
Confidence 3345666666665554433 2333444556677777766554433211 112333334334443443444443333
Q ss_pred -HHhcCCCC----cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhc
Q 037592 140 -IFLQMPVR----NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEY 214 (337)
Q Consensus 140 -~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 214 (337)
+.+.+..+ +......-...|+..|++++|++..... . +......=+..+.+..+.+-|.+.++.|..
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~----~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~-- 165 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG----E--NLEAAALNVQILLKMHRFDLAEKELKKMQQ-- 165 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc----c--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--
Confidence 33333322 2223333346788999999999998762 1 223333334556788899999999999952
Q ss_pred CCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHhc--CCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccch
Q 037592 215 RIKPKIEHYNCMVDLLGR----AGLLEEAETLIENAD--CRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLS 288 (337)
Q Consensus 215 ~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 288 (337)
-.+..+.+.|.+++.+ .+.+..|.-+|+++. ..|+..+.+....++...|++++|..++++++..+|+++.+
T Consensus 166 --ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpet 243 (299)
T KOG3081|consen 166 --IDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPET 243 (299)
T ss_pred --cchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHH
Confidence 2355677777777664 467999999999984 57888889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCChhhHHH-HHHHHHHhCCccCCCCcceeccccccC
Q 037592 289 YVLLDNVYRAVGRWNDAFK-IRTLMKYSGVKKMPGKSWIEANSKLNH 334 (337)
Q Consensus 289 ~~~l~~~~~~~g~~~~A~~-~~~~m~~~~~~~~~~~~~~~~~~~~~~ 334 (337)
...++-+-...|...++.. .+.+.+. ..|.+.||.-.+....
T Consensus 244 L~Nliv~a~~~Gkd~~~~~r~l~QLk~----~~p~h~~vk~~~ekea 286 (299)
T KOG3081|consen 244 LANLIVLALHLGKDAEVTERNLSQLKL----SHPEHPFVKHLNEKEA 286 (299)
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHh----cCCcchHHHHHHHHHH
Confidence 9999888888888766553 4454443 4466667655544433
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=8.5e-08 Score=69.73 Aligned_cols=106 Identities=8% Similarity=-0.134 Sum_probs=64.0
Q ss_pred HHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cC-CCchhHHHHHHHHHhcCC
Q 037592 189 GVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DC-RHDSSLWEVLLGACTTFR 266 (337)
Q Consensus 189 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g 266 (337)
.....+...|++++|...|+.++... +.+...+..+..++...|++++|...|++. .. +.+...+..+..++...|
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQ--PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 34455566666666666666665321 335566666666666666666666666653 22 234455666666666667
Q ss_pred ChhHHHHHHHHHHhcCCCccchHHHHHHHH
Q 037592 267 NAHVAERVAKKIMELKPDCHLSYVLLDNVY 296 (337)
Q Consensus 267 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 296 (337)
++++|+..|+++++..|+++..+.....+.
T Consensus 107 ~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 107 EPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 777777777777666666666555544443
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.5e-06 Score=74.24 Aligned_cols=280 Identities=11% Similarity=0.085 Sum_probs=183.5
Q ss_pred hhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHccc----CChhhHHHHHHHHHcCCChhHHHHHHHHH
Q 037592 3 KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLK----KNSVSSSALLQGYCQTGDFESVIRIFREM 78 (337)
Q Consensus 3 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 78 (337)
.++++.++..++.+ +-|..+...+.--|+..++++.|.+...+... .+...|..|.-.+...+++.+|+.+.+..
T Consensus 461 ~kslqale~av~~d-~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~a 539 (799)
T KOG4162|consen 461 KKSLQALEEAVQFD-PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAA 539 (799)
T ss_pred HHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 46788899998876 33333333355567788899999999888743 36888999999999999999999999988
Q ss_pred hh--cC-cccHHHHHHHHHhhchhhhhHHHHHHHHHh---------------------h-------CCCCchhHHHHHHH
Q 037592 79 EE--ID-LFSFGIVLRACAGLAALRLGKEVHCQYIRR---------------------S-------GCKDVIIESALVDL 127 (337)
Q Consensus 79 ~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------------~-------~~~~~~~~~~l~~~ 127 (337)
.. ++ ......-+..-...++.+++......++.. | +.....++..+...
T Consensus 540 l~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l 619 (799)
T KOG4162|consen 540 LEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSL 619 (799)
T ss_pred HHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHH
Confidence 77 33 111111122222234444443333322221 0 00112222222221
Q ss_pred HHhc---CCHHHHHHHHhcCCCCc------HHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcC
Q 037592 128 YAKC---GCVDFAHQIFLQMPVRN------LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMG 198 (337)
Q Consensus 128 ~~~~---g~~~~A~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 198 (337)
.... -..+..+..+.....|+ ...|......+.+.+..++|...+.+..+. .+.....|......+...|
T Consensus 620 ~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~ 698 (799)
T KOG4162|consen 620 VASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKG 698 (799)
T ss_pred HHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHH
Confidence 1111 11111111111111233 234666778888999999999999888764 2334455665666777889
Q ss_pred chhhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCChHHHHH--HHHHh-cCC-CchhHHHHHHHHHhcCCChhHHHH
Q 037592 199 LIDRGRKHFASMTKEYRIKPK-IEHYNCMVDLLGRAGLLEEAET--LIENA-DCR-HDSSLWEVLLGACTTFRNAHVAER 273 (337)
Q Consensus 199 ~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~ 273 (337)
.+++|.+.|...+ -+.|+ +....++..++.+.|+...|.. ++..+ ... .+...|..+...+.+.|+.+.|.+
T Consensus 699 ~~~EA~~af~~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aae 775 (799)
T KOG4162|consen 699 QLEEAKEAFLVAL---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAE 775 (799)
T ss_pred hhHHHHHHHHHHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHH
Confidence 9999999999886 34554 6788899999999998888877 77654 444 467889999999999999999999
Q ss_pred HHHHHHhcCCCccc
Q 037592 274 VAKKIMELKPDCHL 287 (337)
Q Consensus 274 ~~~~~~~~~p~~~~ 287 (337)
.|..+.++.+.+|.
T Consensus 776 cf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 776 CFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHhhccCCCc
Confidence 99999998776553
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.8e-09 Score=55.85 Aligned_cols=33 Identities=42% Similarity=0.620 Sum_probs=29.8
Q ss_pred cCCCCchHhHHHHHHHHHhcCChHHHHHHHHHc
Q 037592 15 LGLCGNVVVESSLVDMYGKCGLVDESHRVFDKM 47 (337)
Q Consensus 15 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 47 (337)
.|+.||..+|++||++|++.|++++|.++|++|
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 478899999999999999999999999999887
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1e-06 Score=69.16 Aligned_cols=270 Identities=13% Similarity=0.025 Sum_probs=143.6
Q ss_pred CchhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHc--ccCChhhHHH-HHHHHHcCCChhHHHHHHHH
Q 037592 1 RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKM--LKKNSVSSSA-LLQGYCQTGDFESVIRIFRE 77 (337)
Q Consensus 1 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~ 77 (337)
|+++|.+++..-.+++ +.+....+.|..+|-...++..|-..++++ ..|...-|.. -...+-+.+.+..|+.+...
T Consensus 25 ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~ 103 (459)
T KOG4340|consen 25 RYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFL 103 (459)
T ss_pred hHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 4567777777766664 337777888899999999999999999998 3343333332 23455577788888888877
Q ss_pred Hhh-cCcccHHHHH--HHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCC----CcHH
Q 037592 78 MEE-IDLFSFGIVL--RACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV----RNLI 150 (337)
Q Consensus 78 ~~~-~~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~ 150 (337)
|.. ++...-..-+ ......+++..+..+.++.-.. .+..+.+...-...+.|+++.|.+-|+...+ ....
T Consensus 104 ~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpll 180 (459)
T KOG4340|consen 104 LLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLL 180 (459)
T ss_pred hcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHHHHHHHHHHhhcCCCchh
Confidence 755 2211111111 1223445566666665554321 2333444444445566777777776666552 1234
Q ss_pred hHHHHHHHHHhCCCHhHHHHHHHHHHhcCCC-------------CCH---------------hHHHHHHHHHhhcCchhh
Q 037592 151 TWNSMISGFAQNGRGEEALRIFDDMTEGGTK-------------PDH---------------VSFIGVLSACSHMGLIDR 202 (337)
Q Consensus 151 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-------------p~~---------------~~~~~l~~~~~~~~~~~~ 202 (337)
.|+.-+ +..+.|+++.|++...++.+.|++ ||. ..++.-...+.+.|+++.
T Consensus 181 AYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eA 259 (459)
T KOG4340|consen 181 AYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEA 259 (459)
T ss_pred HHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHH
Confidence 454333 334556777777776666665542 111 112222222344566666
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHH--HHHHHHHhcCCCchhHHHHHHHHHhcCCChhHHHHHHH
Q 037592 203 GRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE--AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAK 276 (337)
Q Consensus 203 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~--A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 276 (337)
|.+.+-.|..+.....|+.|...+.-+=....-.+. -+.++-+... -...||..++-.|++..-++.|-.++.
T Consensus 260 A~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLA 334 (459)
T KOG4340|consen 260 AQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLA 334 (459)
T ss_pred HHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHh
Confidence 666555554443444456665554332222111111 1111212211 123456666666666666666655554
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.5e-06 Score=81.19 Aligned_cols=225 Identities=15% Similarity=0.140 Sum_probs=152.6
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHHHHHhh-c-------CcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHH
Q 037592 52 SVSSSALLQGYCQTGDFESVIRIFREMEE-I-------DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESA 123 (337)
Q Consensus 52 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 123 (337)
...|-..|.-....++.++|.+++++++. . -...|.++++.-...|.-+...++|+++.+.. ....+|..
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~~ 1535 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHLK 1535 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHHH
Confidence 45566667777777777777777777765 1 11245666665566666677777777777652 33566777
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCC---CcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHh-HHHHHHHHHhhcCc
Q 037592 124 LVDLYAKCGCVDFAHQIFLQMPV---RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHV-SFIGVLSACSHMGL 199 (337)
Q Consensus 124 l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~ 199 (337)
|...|.+.+++++|.++++.|.+ .....|...+..+.+.++-+.|..++.+..+.=.+-... ...-.+..-.+.|+
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC
Confidence 88888888888888888888873 355678888888888888888888888887742221122 23334455567788
Q ss_pred hhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh---cCCC--chhHHHHHHHHHhcCCChhHHHHH
Q 037592 200 IDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA---DCRH--DSSLWEVLLGACTTFRNAHVAERV 274 (337)
Q Consensus 200 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~--~~~~~~~l~~~~~~~g~~~~a~~~ 274 (337)
.+.+..+|+..+..+ +.-...|+..++.-.+.|+.+.++.+|++. +..| --..|...+.---+.|+-..++.+
T Consensus 1616 aeRGRtlfEgll~ay--PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAY--PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred chhhHHHHHHHHhhC--ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHH
Confidence 888888888887643 455678888888888888888888888863 2222 234566666666677776666665
Q ss_pred HHHHHh
Q 037592 275 AKKIME 280 (337)
Q Consensus 275 ~~~~~~ 280 (337)
=.++.+
T Consensus 1694 KarA~E 1699 (1710)
T KOG1070|consen 1694 KARAKE 1699 (1710)
T ss_pred HHHHHH
Confidence 555544
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.3e-07 Score=68.73 Aligned_cols=109 Identities=8% Similarity=-0.069 Sum_probs=92.0
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cCC-CchhHHHHHHHHHhcCCChhHHHHHHHHHHhc
Q 037592 204 RKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DCR-HDSSLWEVLLGACTTFRNAHVAERVAKKIMEL 281 (337)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 281 (337)
..++++.+ ...|+ .+..+...+...|++++|...|+.. ... .+...|..+..++...|++++|+..|+++.++
T Consensus 13 ~~~~~~al---~~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLL---SVDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHH---HcCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34566664 23454 4556788899999999999999984 344 46777888889999999999999999999999
Q ss_pred CCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCC
Q 037592 282 KPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGV 317 (337)
Q Consensus 282 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 317 (337)
+|+++..+..++.++...|++++|...|++..+...
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p 123 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSY 123 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999887543
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=4.1e-07 Score=69.88 Aligned_cols=115 Identities=10% Similarity=0.017 Sum_probs=65.0
Q ss_pred hchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhHHHHHHHH-HhCCC--HhHHH
Q 037592 96 LAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP---VRNLITWNSMISGF-AQNGR--GEEAL 169 (337)
Q Consensus 96 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~-~~~~~--~~~a~ 169 (337)
.++.+++...+++.++.++ .+...|..+...|...|++++|...|++.. +.+...+..+..++ ...|+ .++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~~P-~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANP-QNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 3444555555555555554 556666666666666666666666666554 22445555555542 44454 36666
Q ss_pred HHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHH
Q 037592 170 RIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTK 212 (337)
Q Consensus 170 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 212 (337)
.++++..+.+.. +...+..+...+.+.|++++|...|+++++
T Consensus 131 ~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 131 EMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 666666654322 344555555556666666666666666644
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.4e-06 Score=70.67 Aligned_cols=177 Identities=15% Similarity=0.050 Sum_probs=125.1
Q ss_pred CHHHHHHHHhcCC------CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHH
Q 037592 133 CVDFAHQIFLQMP------VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKH 206 (337)
Q Consensus 133 ~~~~A~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 206 (337)
++..+.+.-++++ .|+...+...+.+.........+..++.+-.+ ..-...-|..-+ .+...|.++.|+..
T Consensus 252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~aa~YG~A~-~~~~~~~~d~A~~~ 328 (484)
T COG4783 252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSK--RGGLAAQYGRAL-QTYLAGQYDEALKL 328 (484)
T ss_pred HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhC--ccchHHHHHHHH-HHHHhcccchHHHH
Confidence 3455555666665 34555666666655544444444433333222 122233344333 45567999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cCCCc-hhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCC
Q 037592 207 FASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DCRHD-SSLWEVLLGACTTFRNAHVAERVAKKIMELKPD 284 (337)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 284 (337)
++.++.. .+-|+..+....+.+.+.++.++|.+.++++ ...|+ ...+-.+..++.+.|++.+|+.+++.....+|+
T Consensus 329 l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~ 406 (484)
T COG4783 329 LQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPE 406 (484)
T ss_pred HHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Confidence 9998764 3556667777888999999999999999985 45666 445566778899999999999999999999999
Q ss_pred ccchHHHHHHHHHHcCChhhHHHHHHHHHH
Q 037592 285 CHLSYVLLDNVYRAVGRWNDAFKIRTLMKY 314 (337)
Q Consensus 285 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 314 (337)
++..|..|.++|...|+..++....-++..
T Consensus 407 dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 407 DPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred CchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 999999999999998888877776665543
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.1e-06 Score=73.45 Aligned_cols=212 Identities=16% Similarity=0.112 Sum_probs=167.8
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHhhcCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHH
Q 037592 56 SALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135 (337)
Q Consensus 56 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 135 (337)
..+...+...|-...|+.+|++.. .|..++.+|...|+..+|..+..+.++ -+|+...|..+++.....--++
T Consensus 402 ~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~yE 474 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSLYE 474 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHHHH
Confidence 457788889999999999999874 577889999999999999999988888 3588999999988887777889
Q ss_pred HHHHHHhcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcC
Q 037592 136 FAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYR 215 (337)
Q Consensus 136 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 215 (337)
+|.++++....+ +-..+.....+.++++++.+.|+.-.+.. +.-..+|.....+..+.+++..|.+.|...+. +
T Consensus 475 kawElsn~~sar---A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvt--L 548 (777)
T KOG1128|consen 475 KAWELSNYISAR---AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT--L 548 (777)
T ss_pred HHHHHhhhhhHH---HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhh--c
Confidence 999998766533 22233333345789999999999877742 22456777777777789999999999988863 3
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cC-CCchhHHHHHHHHHhcCCChhHHHHHHHHHHh
Q 037592 216 IKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DC-RHDSSLWEVLLGACTTFRNAHVAERVAKKIME 280 (337)
Q Consensus 216 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 280 (337)
-+-+...||.+-.+|.+.|+-.+|...+++. +. ..+...|...+....+.|.+++|++.+.++..
T Consensus 549 ~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 549 EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 3445788999999999999999999999874 22 33455677788888899999999999998876
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.4e-06 Score=74.99 Aligned_cols=75 Identities=8% Similarity=0.046 Sum_probs=34.3
Q ss_pred HcCCChhHHHHHHHHHhhcCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHh
Q 037592 63 CQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFL 142 (337)
Q Consensus 63 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 142 (337)
...|.+++|+.+|.+.+. |..+=..|...|.+++|.++-+.--+. .=..||......+...++.+.|++.|+
T Consensus 811 ieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRi---HLr~Tyy~yA~~Lear~Di~~AleyyE 882 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRI---HLRNTYYNYAKYLEARRDIEAALEYYE 882 (1416)
T ss_pred HHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccce---ehhhhHHHHHHHHHhhccHHHHHHHHH
Confidence 344555555555555443 223333444455555555543321111 112344444444445555555555555
Q ss_pred cCC
Q 037592 143 QMP 145 (337)
Q Consensus 143 ~~~ 145 (337)
+..
T Consensus 883 K~~ 885 (1416)
T KOG3617|consen 883 KAG 885 (1416)
T ss_pred hcC
Confidence 543
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.4e-06 Score=77.34 Aligned_cols=237 Identities=15% Similarity=0.088 Sum_probs=171.8
Q ss_pred chHhHHHHH--HHHHhcCChHHHHHHHHHcccCChhhHHHHHHHHHcCCChhHHHHHHHHHhh------------cCccc
Q 037592 20 NVVVESSLV--DMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEE------------IDLFS 85 (337)
Q Consensus 20 ~~~~~~~l~--~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------~~~~~ 85 (337)
|..|-..++ +.|..-|+.+.|.+-.+.+ .+...|..+...|++.++.+-|.-.+-.|.. .+...
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~I--kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~ 802 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFI--KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEED 802 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHH--hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcch
Confidence 455555555 4577789999998877665 3567899999999999999999988888865 11133
Q ss_pred HHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCC-cHHhHHHHHHHHHhCCC
Q 037592 86 FGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQNGR 164 (337)
Q Consensus 86 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 164 (337)
-..+.......|-+++|+.+|++..+.. .|=..|...|.|++|.++-+.-..- =..||.....-+-..++
T Consensus 803 eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~D 873 (1416)
T KOG3617|consen 803 EAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRD 873 (1416)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhcc
Confidence 3344455678899999999999887643 3446788899999999987644322 12467677777777888
Q ss_pred HhHHHHHHHHH----------HhcCC---------CCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHH
Q 037592 165 GEEALRIFDDM----------TEGGT---------KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNC 225 (337)
Q Consensus 165 ~~~a~~~~~~m----------~~~~~---------~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 225 (337)
.+.|++.|++. +...+ ..|...|......+-..|+.+.|+.+|..+ + -|.+
T Consensus 874 i~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A-~---------D~fs 943 (1416)
T KOG3617|consen 874 IEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA-K---------DYFS 943 (1416)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh-h---------hhhh
Confidence 88888888753 22111 224455666666666788888888888877 3 3556
Q ss_pred HHHHHHhcCChHHHHHHHHHhcCCCchhHHHHHHHHHhcCCChhHHHHHHHHHHh
Q 037592 226 MVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME 280 (337)
Q Consensus 226 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 280 (337)
++...|-.|+.++|-++-++-+ |......+...|-..|++.+|..+|.++..
T Consensus 944 ~VrI~C~qGk~~kAa~iA~esg---d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 944 MVRIKCIQGKTDKAARIAEESG---DKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred heeeEeeccCchHHHHHHHhcc---cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 7777888899999988888876 444556677888888999999988887754
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.1e-05 Score=75.54 Aligned_cols=284 Identities=10% Similarity=-0.016 Sum_probs=167.5
Q ss_pred HhcCChHHHHHHHHHccc----CChhhHHHHHHHHHcCCChhHHHHHHHHHhh--c--C---c-c----cHHHHHHHHHh
Q 037592 32 GKCGLVDESHRVFDKMLK----KNSVSSSALLQGYCQTGDFESVIRIFREMEE--I--D---L-F----SFGIVLRACAG 95 (337)
Q Consensus 32 ~~~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~--~---~-~----~~~~l~~~~~~ 95 (337)
...|+++.+...++.+.. .+..........+...|++++|..++..... + + . . ....+...+..
T Consensus 385 ~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 464 (903)
T PRK04841 385 FNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIN 464 (903)
T ss_pred HhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHh
Confidence 344555555555554411 1222223344555677888888888877654 1 1 1 0 11122344567
Q ss_pred hchhhhhHHHHHHHHHhhCCCCc----hhHHHHHHHHHhcCCHHHHHHHHhcCC-------CCc--HHhHHHHHHHHHhC
Q 037592 96 LAALRLGKEVHCQYIRRSGCKDV----IIESALVDLYAKCGCVDFAHQIFLQMP-------VRN--LITWNSMISGFAQN 162 (337)
Q Consensus 96 ~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~--~~~~~~l~~~~~~~ 162 (337)
.|+++.|...+++.+..-...+. ...+.+...+...|++++|...+++.. .+. ..++..+...+...
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~ 544 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ 544 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence 78888888888887764221221 234556666778899988888887765 111 23445566777888
Q ss_pred CCHhHHHHHHHHHHhc----CCC--C-CHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcC-CCC--CHHHHHHHHHHHHh
Q 037592 163 GRGEEALRIFDDMTEG----GTK--P-DHVSFIGVLSACSHMGLIDRGRKHFASMTKEYR-IKP--KIEHYNCMVDLLGR 232 (337)
Q Consensus 163 ~~~~~a~~~~~~m~~~----~~~--p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~ 232 (337)
|++++|...+++.... +.. + ....+..+...+...|++++|...+.+.+.... ..+ ....+..+...+..
T Consensus 545 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~ 624 (903)
T PRK04841 545 GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA 624 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH
Confidence 9999998888776542 211 1 122333444556677999999888887644211 111 23344456667778
Q ss_pred cCChHHHHHHHHHh----cCCCchhHHH-----HHHHHHhcCCChhHHHHHHHHHHhcCCCccc----hHHHHHHHHHHc
Q 037592 233 AGLLEEAETLIENA----DCRHDSSLWE-----VLLGACTTFRNAHVAERVAKKIMELKPDCHL----SYVLLDNVYRAV 299 (337)
Q Consensus 233 ~g~~~~A~~~~~~~----~~~~~~~~~~-----~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~~~~~ 299 (337)
.|++++|.+.+++. ........+. ..+..+...|+.+.|..++.......+.... .+..+..++...
T Consensus 625 ~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 704 (903)
T PRK04841 625 RGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILL 704 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHc
Confidence 89999888887764 1111111111 1123345578888888887665542222111 135677788899
Q ss_pred CChhhHHHHHHHHHHh
Q 037592 300 GRWNDAFKIRTLMKYS 315 (337)
Q Consensus 300 g~~~~A~~~~~~m~~~ 315 (337)
|++++|...+++....
T Consensus 705 g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 705 GQFDEAEIILEELNEN 720 (903)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999988764
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.78 E-value=6.7e-07 Score=80.70 Aligned_cols=160 Identities=15% Similarity=0.114 Sum_probs=121.0
Q ss_pred CCCc-hHhHHHHHHHHHhcCChHHHHHHHHHcccC---ChhhHHHHHHHHHcCCChhHHHHHHHHHhh-----cCcccHH
Q 037592 17 LCGN-VVVESSLVDMYGKCGLVDESHRVFDKMLKK---NSVSSSALLQGYCQTGDFESVIRIFREMEE-----IDLFSFG 87 (337)
Q Consensus 17 ~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~ 87 (337)
+.|+ ...|..|...|....+...|.+.|+...+. +..++......|++..+++.|..+.-..-+ .-...|.
T Consensus 487 ld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~ 566 (1238)
T KOG1127|consen 487 LDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWV 566 (1238)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhh
Confidence 3455 357899999999888999999999998544 566788899999999999999998444333 1122344
Q ss_pred HHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHH-hH--HHHHHHHHhCCC
Q 037592 88 IVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLI-TW--NSMISGFAQNGR 164 (337)
Q Consensus 88 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~--~~l~~~~~~~~~ 164 (337)
...-.+...++...+..-|+..++..+ .|...|..++.+|.++|++..|+++|.+...-++. .| .-..-.-+..|.
T Consensus 567 ~rG~yyLea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~Gk 645 (1238)
T KOG1127|consen 567 QRGPYYLEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGK 645 (1238)
T ss_pred hccccccCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhh
Confidence 555667888999999999999998876 78899999999999999999999999887733222 11 122233466788
Q ss_pred HhHHHHHHHHHHh
Q 037592 165 GEEALRIFDDMTE 177 (337)
Q Consensus 165 ~~~a~~~~~~m~~ 177 (337)
+.+|+..+.....
T Consensus 646 Ykeald~l~~ii~ 658 (1238)
T KOG1127|consen 646 YKEALDALGLIIY 658 (1238)
T ss_pred HHHHHHHHHHHHH
Confidence 8888887776654
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.2e-08 Score=53.46 Aligned_cols=33 Identities=36% Similarity=0.480 Sum_probs=25.0
Q ss_pred hCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC
Q 037592 113 SGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP 145 (337)
Q Consensus 113 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 145 (337)
|+.||..+|++|+++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 566777777777777777777777777777764
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.77 E-value=1e-06 Score=67.91 Aligned_cols=157 Identities=12% Similarity=-0.017 Sum_probs=106.8
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHHhh---cCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHH
Q 037592 51 NSVSSSALLQGYCQTGDFESVIRIFREMEE---IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDL 127 (337)
Q Consensus 51 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 127 (337)
|... ..+-..+...|+-+....+..+... .|.......+....+.|++..|...++++....+ +|...|+.+.-+
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p-~d~~~~~~lgaa 143 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAP-TDWEAWNLLGAA 143 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCC-CChhhhhHHHHH
Confidence 3444 5555666677777777777766544 2333444466777777788888887777777655 777788878778
Q ss_pred HHhcCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHH
Q 037592 128 YAKCGCVDFAHQIFLQMP---VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGR 204 (337)
Q Consensus 128 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 204 (337)
|.+.|+++.|..-|.+.. ..++...+.+...|.-.|+.+.|..++......+.. |...-..+.......|+++.|.
T Consensus 144 ldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~ 222 (257)
T COG5010 144 LDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAE 222 (257)
T ss_pred HHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHH
Confidence 888888888777777665 345667777777777778888888887777665333 4444455666667778888777
Q ss_pred HHHHHH
Q 037592 205 KHFASM 210 (337)
Q Consensus 205 ~~~~~~ 210 (337)
++...-
T Consensus 223 ~i~~~e 228 (257)
T COG5010 223 DIAVQE 228 (257)
T ss_pred hhcccc
Confidence 766543
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.7e-06 Score=75.78 Aligned_cols=171 Identities=13% Similarity=0.034 Sum_probs=117.5
Q ss_pred cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHh-HHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHH
Q 037592 148 NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHV-SFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCM 226 (337)
Q Consensus 148 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 226 (337)
+...+..|.....+.|++++|..+++...+ ..|+.. ....++..+.+.+++++|...+++.+.. -+-+......+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHH
Confidence 467777788888888888888888888887 455543 5555667788888888888888888643 24445666777
Q ss_pred HHHHHhcCChHHHHHHHHHhc-CCC-chhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhh
Q 037592 227 VDLLGRAGLLEEAETLIENAD-CRH-DSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWND 304 (337)
Q Consensus 227 ~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 304 (337)
..++.+.|++++|..+|+++- ..| +..++..+..++...|+.++|...|+++.+...+-...|+.++. +...
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~------~~~~ 234 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV------DLNA 234 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH------HHHH
Confidence 788888888888888888753 333 35667777788888888888888888888844443455554432 3444
Q ss_pred HHHHHHHHHHhCCccCCCCcceec
Q 037592 305 AFKIRTLMKYSGVKKMPGKSWIEA 328 (337)
Q Consensus 305 A~~~~~~m~~~~~~~~~~~~~~~~ 328 (337)
-...++++.-.+......++.+.+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~ 258 (694)
T PRK15179 235 DLAALRRLGVEGDGRDVPVSILVL 258 (694)
T ss_pred HHHHHHHcCcccccCCCceeeeeH
Confidence 455666665555544444444443
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.6e-06 Score=74.05 Aligned_cols=139 Identities=14% Similarity=0.287 Sum_probs=79.4
Q ss_pred HHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHhHH
Q 037592 89 VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEA 168 (337)
Q Consensus 89 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 168 (337)
.+.+....+.|.+|+.+++.+..... ...-|..+.+.|...|+++.|.++|-+.- .++-.|..|.+.|+|++|
T Consensus 738 aieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHH
Confidence 34445556667777777666655432 23345556667777777777777775432 344456667777777777
Q ss_pred HHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 037592 169 LRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA 246 (337)
Q Consensus 169 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 246 (337)
.++-.+. .|.......|..-..-.-+.|++.+|.++|-.+ | .|+. .|++|-+.|..+..+++.++-
T Consensus 811 ~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti----~-~p~~-----aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 811 FKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITI----G-EPDK-----AIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred HHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEc----c-CchH-----HHHHHHhhCcchHHHHHHHHh
Confidence 7665444 223334444554455555666666666666444 1 2332 245566666666666666553
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.6e-06 Score=76.12 Aligned_cols=144 Identities=17% Similarity=0.145 Sum_probs=84.0
Q ss_pred HHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCh
Q 037592 157 SGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236 (337)
Q Consensus 157 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 236 (337)
.+-...++|.+|+.+++.+..... ...-|..+...|+..|+++.|.++|.+. + .++-.|.+|.+.|+|
T Consensus 740 eaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~----~------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA----D------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc----c------hhHHHHHHHhccccH
Confidence 344456677777777777665422 3345666777888888888888877654 2 234456778888888
Q ss_pred HHHHHHHHHh-cCCCchhHHHHHHHHHhcCCChhHHHH-------------HHHHH------Hh----cCCCc-cchHHH
Q 037592 237 EEAETLIENA-DCRHDSSLWEVLLGACTTFRNAHVAER-------------VAKKI------ME----LKPDC-HLSYVL 291 (337)
Q Consensus 237 ~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~-------------~~~~~------~~----~~p~~-~~~~~~ 291 (337)
+.|.++-++. +.......|-+-..-.-++|++.+|++ .|++. ++ ..|+. ..+...
T Consensus 808 ~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~ 887 (1636)
T KOG3616|consen 808 EDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKH 887 (1636)
T ss_pred HHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHH
Confidence 8888877663 333333334333333344444443333 33221 11 22221 345666
Q ss_pred HHHHHHHcCChhhHHHHHHHH
Q 037592 292 LDNVYRAVGRWNDAFKIRTLM 312 (337)
Q Consensus 292 l~~~~~~~g~~~~A~~~~~~m 312 (337)
+..-|...|+...|...|-+.
T Consensus 888 f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 888 FAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred HHHHHHhccChhHHHHHHHhh
Confidence 677777778888887776554
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1e-05 Score=62.47 Aligned_cols=151 Identities=15% Similarity=0.038 Sum_probs=69.1
Q ss_pred HHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHh
Q 037592 90 LRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP---VRNLITWNSMISGFAQNGRGE 166 (337)
Q Consensus 90 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~ 166 (337)
...+...|+-+....+..+.....+ .+......++....+.|++..|...|++.. ++|..+|+.+.-+|.+.|+.+
T Consensus 73 a~a~~~~G~a~~~l~~~~~~~~~~~-~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~ 151 (257)
T COG5010 73 ATALYLRGDADSSLAVLQKSAIAYP-KDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFD 151 (257)
T ss_pred HHHHHhcccccchHHHHhhhhccCc-ccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChh
Confidence 3344444444444444444332211 333344444555555555555555555444 334455555555555555555
Q ss_pred HHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 037592 167 EALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIE 244 (337)
Q Consensus 167 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 244 (337)
+|..-|.+..+.... +...++.+.-.+.-.|+.+.|..++..... .-.-|..+-..+..+....|++++|.++..
T Consensus 152 ~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l--~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 152 EARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYL--SPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred HHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHh--CCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 555555555443111 223334444444445555555555555422 112244444445555555555555555443
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.71 E-value=7.2e-07 Score=72.95 Aligned_cols=266 Identities=9% Similarity=-0.034 Sum_probs=175.6
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHhh--cCc-ccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcC
Q 037592 56 SALLQGYCQTGDFESVIRIFREMEE--IDL-FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCG 132 (337)
Q Consensus 56 ~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 132 (337)
......+.+..++..|+..+....+ ||. .-|..-+..+...++++++.--.++-++... .....+...-.++...+
T Consensus 53 k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd-~~~k~~~r~~~c~~a~~ 131 (486)
T KOG0550|consen 53 KEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKD-GFSKGQLREGQCHLALS 131 (486)
T ss_pred HhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCC-CccccccchhhhhhhhH
Confidence 3344567777788888888888887 544 3456666777777777777776665554422 11222333333343344
Q ss_pred CHHHHHHHHh---------------cCC-----CCcHHhHHHH-HHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHH
Q 037592 133 CVDFAHQIFL---------------QMP-----VRNLITWNSM-ISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVL 191 (337)
Q Consensus 133 ~~~~A~~~~~---------------~~~-----~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 191 (337)
+..+|.+.++ ... +|...+|..+ ..++...|++++|.+.--..++.... ..+..++
T Consensus 132 ~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~---n~~al~v 208 (486)
T KOG0550|consen 132 DLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDAT---NAEALYV 208 (486)
T ss_pred HHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccc---hhHHHHh
Confidence 4444433332 222 2233444444 35667889999999887777664221 2233334
Q ss_pred H--HHhhcCchhhHHHHHHHHHHhcCCCCCHHHH-------------HHHHHHHHhcCChHHHHHHHHH-hcCCC-----
Q 037592 192 S--ACSHMGLIDRGRKHFASMTKEYRIKPKIEHY-------------NCMVDLLGRAGLLEEAETLIEN-ADCRH----- 250 (337)
Q Consensus 192 ~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------------~~l~~~~~~~g~~~~A~~~~~~-~~~~~----- 250 (337)
+ ++--.++.+.|...|++.+ ...|+...- ..=..-..+.|++.+|.+.|.+ +++.|
T Consensus 209 rg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~ 285 (486)
T KOG0550|consen 209 RGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKT 285 (486)
T ss_pred cccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccch
Confidence 3 3335788999999999886 345553221 1122334678999999999986 45444
Q ss_pred chhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCCccCCCCcceec
Q 037592 251 DSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEA 328 (337)
Q Consensus 251 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ 328 (337)
++..|.....+..+.|+..+|+.-.+++.+++|.....|..-..++...++|++|.+-|++..+..-.+.+..+|...
T Consensus 286 naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A 363 (486)
T KOG0550|consen 286 NAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREA 363 (486)
T ss_pred hHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHH
Confidence 445565566678899999999999999999999988899999999999999999999999988776666565555443
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=9.5e-06 Score=73.81 Aligned_cols=139 Identities=9% Similarity=0.075 Sum_probs=100.0
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHHhh--cCcc-cHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHH
Q 037592 51 NSVSSSALLQGYCQTGDFESVIRIFREMEE--IDLF-SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDL 127 (337)
Q Consensus 51 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 127 (337)
++..+..|.....+.|++++|+.+++...+ ||.. ....++.++.+.+++++|...+++++...+ .+......+..+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p-~~~~~~~~~a~~ 163 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS-SSAREILLEAKS 163 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC-CCHHHHHHHHHH
Confidence 466677777777888888888888888877 5544 556667777888888888888888887765 566667777777
Q ss_pred HHhcCCHHHHHHHHhcCCCC---cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHH
Q 037592 128 YAKCGCVDFAHQIFLQMPVR---NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVL 191 (337)
Q Consensus 128 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 191 (337)
+.+.|++++|..+|+++..+ +..++..+..++...|+.++|...|++..+. ..|....|+..+
T Consensus 164 l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~ 229 (694)
T PRK15179 164 WDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRL 229 (694)
T ss_pred HHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHH
Confidence 88888888888888877732 2567777777778888888888888877665 334444444443
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=5.6e-06 Score=76.25 Aligned_cols=199 Identities=11% Similarity=0.032 Sum_probs=137.0
Q ss_pred CCCC-chHhHHHHHHHHHhcCChHHHHHHHHHccc--C-ChhhHHHHHHHHHcCCChhHHHHHHHHHhh---cCc-----
Q 037592 16 GLCG-NVVVESSLVDMYGKCGLVDESHRVFDKMLK--K-NSVSSSALLQGYCQTGDFESVIRIFREMEE---IDL----- 83 (337)
Q Consensus 16 ~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~----- 83 (337)
+..| +...+..|+..+...+++++|.++.+.... | ....|..+...+.+.++...+..+ .+.. .+.
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~v 102 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIV 102 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHH
Confidence 4455 467899999999999999999999987633 3 234455555567777766666555 3333 222
Q ss_pred --------------ccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcH
Q 037592 84 --------------FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNL 149 (337)
Q Consensus 84 --------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 149 (337)
.++..+..+|-+.|+.+++..+|+++++..+ .+..+.|.+...|... +.++|++++.+...
T Consensus 103 e~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~-~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~--- 177 (906)
T PRK14720 103 EHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADR-DNPEIVKKLATSYEEE-DKEKAITYLKKAIY--- 177 (906)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHh-hHHHHHHHHHHHHH---
Confidence 4667778888888999999999999998874 7888889999888888 99999888876542
Q ss_pred HhHHHHHHHHHhCCCHhHHHHHHHHHHhc-------------------CCCCCHhHHHHHHHHHhhcCchhhHHHHHHHH
Q 037592 150 ITWNSMISGFAQNGRGEEALRIFDDMTEG-------------------GTKPDHVSFIGVLSACSHMGLIDRGRKHFASM 210 (337)
Q Consensus 150 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-------------------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 210 (337)
.|...+++.++.++|.++... |..--..++-.+-..|....+++++..+++.+
T Consensus 178 --------~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~i 249 (906)
T PRK14720 178 --------RFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKI 249 (906)
T ss_pred --------HHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 244445555555555555543 11112233344446677778888999999888
Q ss_pred HHhcCCCCCHHHHHHHHHHHH
Q 037592 211 TKEYRIKPKIEHYNCMVDLLG 231 (337)
Q Consensus 211 ~~~~~~~~~~~~~~~l~~~~~ 231 (337)
++.. +.|......++.+|.
T Consensus 250 L~~~--~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 250 LEHD--NKNNKAREELIRFYK 268 (906)
T ss_pred HhcC--CcchhhHHHHHHHHH
Confidence 7532 445666677777765
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.67 E-value=7.7e-07 Score=74.90 Aligned_cols=117 Identities=15% Similarity=0.150 Sum_probs=57.9
Q ss_pred HHHHHHcCCChhHHHHHHHHHhhcCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHH
Q 037592 58 LLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFA 137 (337)
Q Consensus 58 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 137 (337)
|+..+...++++.|+++++++.+.++.....++..+...++..+|.+++++.++..+ .+..........+.+.++++.|
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p-~d~~LL~~Qa~fLl~k~~~~lA 253 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKENP-QDSELLNLQAEFLLSKKKYELA 253 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCHHHH
Confidence 334444445555555555555553333444444444444555555555555554432 3344444444555555555555
Q ss_pred HHHHhcCC--CC-cHHhHHHHHHHHHhCCCHhHHHHHHHHH
Q 037592 138 HQIFLQMP--VR-NLITWNSMISGFAQNGRGEEALRIFDDM 175 (337)
Q Consensus 138 ~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m 175 (337)
+.+.+++. .| +..+|..|..+|...|+++.|+..++.+
T Consensus 254 L~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 254 LEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 55555554 23 2335555555555555555555555443
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.66 E-value=7.9e-07 Score=64.17 Aligned_cols=97 Identities=11% Similarity=-0.018 Sum_probs=56.7
Q ss_pred HHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cCCC-chhHHHHHHHHHhc
Q 037592 187 FIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DCRH-DSSLWEVLLGACTT 264 (337)
Q Consensus 187 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~ 264 (337)
...+...+...|++++|...++.+.... +.+...+..+...+...|++++|...+++. ...| +...+..+...+..
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYD--PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 3444455556666666666666664321 345556666666666666666666666653 2222 34445555556666
Q ss_pred CCChhHHHHHHHHHHhcCCCc
Q 037592 265 FRNAHVAERVAKKIMELKPDC 285 (337)
Q Consensus 265 ~g~~~~a~~~~~~~~~~~p~~ 285 (337)
.|+++.|...++++.+..|++
T Consensus 98 ~g~~~~A~~~~~~al~~~p~~ 118 (135)
T TIGR02552 98 LGEPESALKALDLAIEICGEN 118 (135)
T ss_pred cCCHHHHHHHHHHHHHhcccc
Confidence 666666666666666666664
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.66 E-value=0.0001 Score=67.45 Aligned_cols=251 Identities=14% Similarity=0.124 Sum_probs=134.0
Q ss_pred HHHHHHHHhcCCC--CchHhHHHHHHHHHhcCChHHHHHHHHHc-ccCCh-----hhHHHHHHHHHcCCChhHHHHHHHH
Q 037592 6 KEVHAKVITLGLC--GNVVVESSLVDMYGKCGLVDESHRVFDKM-LKKNS-----VSSSALLQGYCQTGDFESVIRIFRE 77 (337)
Q Consensus 6 ~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~ 77 (337)
+++.+..++.+++ .|+...+.-+.++...+-..+-+++++++ .++++ ..-|.|+-...+. +..++.++.++
T Consensus 967 RqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~r 1045 (1666)
T KOG0985|consen 967 RQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINR 1045 (1666)
T ss_pred HHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHH
Confidence 4566777776643 35566677789999999999999999998 34432 2345555555554 44567777777
Q ss_pred HhhcCcccHHHHHHHHHhhchhhhhHHHHHHHHHhh---------------------CCCCchhHHHHHHHHHhcCCHHH
Q 037592 78 MEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRS---------------------GCKDVIIESALVDLYAKCGCVDF 136 (337)
Q Consensus 78 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------------~~~~~~~~~~l~~~~~~~g~~~~ 136 (337)
+-.-|.. .+...+...+-+++|..+|++.-..+ -...+.+|..+..+-.+.|.+.+
T Consensus 1046 LdnyDa~---~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~d 1122 (1666)
T KOG0985|consen 1046 LDNYDAP---DIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKD 1122 (1666)
T ss_pred hccCCch---hHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHH
Confidence 6652211 12333444455555555554321100 01234555666666666666666
Q ss_pred HHHHHhcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCC
Q 037592 137 AHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRI 216 (337)
Q Consensus 137 A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 216 (337)
|++-|-+.. |+..|.-.+....+.|.|++-.+++.-..+....|... +.++-+|++.++..+-+.++ .
T Consensus 1123 AieSyikad--Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi--------~ 1190 (1666)
T KOG0985|consen 1123 AIESYIKAD--DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI--------A 1190 (1666)
T ss_pred HHHHHHhcC--CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh--------c
Confidence 665554333 44455556666666666666666655555544444333 23455555555544433221 1
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHhcCCCchhHHHHHHHHHhcCCChhHHHHHHHHH
Q 037592 217 KPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKI 278 (337)
Q Consensus 217 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 278 (337)
.|+......+.+-|...|.++.|.-+|.. +..|..+...+...|+++.|....+++
T Consensus 1191 gpN~A~i~~vGdrcf~~~~y~aAkl~y~~------vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1191 GPNVANIQQVGDRCFEEKMYEAAKLLYSN------VSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred CCCchhHHHHhHHHhhhhhhHHHHHHHHH------hhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 24444444444444444555444444432 223455555555555555555544443
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.8e-05 Score=65.41 Aligned_cols=135 Identities=10% Similarity=-0.017 Sum_probs=66.7
Q ss_pred HHHhcCCHHHHHHHHhcCC--CC-cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCC-HhHHHHHHHHHhhcCchhh
Q 037592 127 LYAKCGCVDFAHQIFLQMP--VR-NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPD-HVSFIGVLSACSHMGLIDR 202 (337)
Q Consensus 127 ~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~ 202 (337)
.+...|++++|+..++.+. .| |+..+......+.+.|+.++|.+.++++... .|+ ......+..++.+.|++.+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHH
Confidence 3344455555555555544 23 3333344445555555555555555555552 333 2223334455555555555
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhcCCCchhHHHHHHHHHhcCCChhHHHHHHHHHHh
Q 037592 203 GRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME 280 (337)
Q Consensus 203 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 280 (337)
|+++++..+. ..+-|+..|..|.++|...|+..++..... ..+...|+++.|+..+..+.+
T Consensus 393 ai~~L~~~~~--~~p~dp~~w~~LAqay~~~g~~~~a~~A~A---------------E~~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 393 AIRILNRYLF--NDPEDPNGWDLLAQAYAELGNRAEALLARA---------------EGYALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred HHHHHHHHhh--cCCCCchHHHHHHHHHHHhCchHHHHHHHH---------------HHHHhCCCHHHHHHHHHHHHH
Confidence 5555555533 224445555555555555555544443322 234445555555555555554
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=9.7e-07 Score=63.37 Aligned_cols=98 Identities=13% Similarity=0.004 Sum_probs=83.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhc--CCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHH
Q 037592 219 KIEHYNCMVDLLGRAGLLEEAETLIENAD--CRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296 (337)
Q Consensus 219 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 296 (337)
+......+..-+...|++++|.++|+-+- .+.+...|-.|..++...|++++|+..|..+..++|+++..+..++.++
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 34455666777889999999999999752 3445667888888899999999999999999999999999999999999
Q ss_pred HHcCChhhHHHHHHHHHHhC
Q 037592 297 RAVGRWNDAFKIRTLMKYSG 316 (337)
Q Consensus 297 ~~~g~~~~A~~~~~~m~~~~ 316 (337)
...|+.+.|.+.|+..+...
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHh
Confidence 99999999999999887654
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.63 E-value=0.00012 Score=67.08 Aligned_cols=139 Identities=13% Similarity=0.058 Sum_probs=93.9
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHHhhcCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHh
Q 037592 51 NSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAK 130 (337)
Q Consensus 51 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 130 (337)
.+..|..+..+-.+.|...+|++-|-+. .|+..|..++..+.+.|.+++-.+++.-+.+...+|.. =+.|+-+|++
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika--dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAk 1178 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA--DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAK 1178 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc--CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHH
Confidence 3557888888888888888888877655 56677888999999999999988888777776555544 3567888888
Q ss_pred cCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHH
Q 037592 131 CGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205 (337)
Q Consensus 131 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 205 (337)
.++..+.++++. .|+..-......-|...|.++.|.-+|... .-|..+...+...|++..|..
T Consensus 1179 t~rl~elE~fi~---gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD 1241 (1666)
T KOG0985|consen 1179 TNRLTELEEFIA---GPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVD 1241 (1666)
T ss_pred hchHHHHHHHhc---CCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHH
Confidence 888887776543 355555555555666666666665555432 223444444445555554443
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.62 E-value=0.00024 Score=60.76 Aligned_cols=119 Identities=13% Similarity=0.029 Sum_probs=86.5
Q ss_pred hhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhc---CCC-chhHHHHHHHHHhcCCChhHHHHHH
Q 037592 200 IDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENAD---CRH-DSSLWEVLLGACTTFRNAHVAERVA 275 (337)
Q Consensus 200 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~-~~~~~~~l~~~~~~~g~~~~a~~~~ 275 (337)
.+.....+++++......|+ .+|..++..-.+..-++.|+.+|.+.+ ..+ ++...++++.-++ .++.+.|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHH
Confidence 44555566666544444444 356667777778888899999998864 222 5556666666555 56888999999
Q ss_pred HHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCCccC
Q 037592 276 KKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKM 320 (337)
Q Consensus 276 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 320 (337)
+-.+...++++..-...+.-+...++-..|..+|++....++.++
T Consensus 425 eLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ 469 (656)
T KOG1914|consen 425 ELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSAD 469 (656)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChh
Confidence 999888888777777778888888888889999998888866543
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.9e-06 Score=71.47 Aligned_cols=125 Identities=10% Similarity=0.027 Sum_probs=103.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCc
Q 037592 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGL 199 (337)
Q Consensus 120 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 199 (337)
....|+..+...++++.|+++|+++...++.....++..+...++..+|.+++.+..+.. +-+...+..-...+.+.++
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 334566777778999999999999997777777788999999999999999999998752 2355555556677889999
Q ss_pred hhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhc
Q 037592 200 IDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENAD 247 (337)
Q Consensus 200 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 247 (337)
.+.|..+.+++++. .+-+..+|..|..+|...|+++.|+..++.++
T Consensus 250 ~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 250 YELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999753 24446799999999999999999999998764
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.59 E-value=5.9e-06 Score=74.90 Aligned_cols=304 Identities=11% Similarity=0.011 Sum_probs=154.7
Q ss_pred hhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHcccCC-----hhhHHHHHHHHHcCCChhHHHHHHHH
Q 037592 3 KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKN-----SVSSSALLQGYCQTGDFESVIRIFRE 77 (337)
Q Consensus 3 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~ 77 (337)
.+|.+-|+...+.+ ..+........+.|++..++++|..+.-..-+.+ ...|....-.|...++..+|+.-|+.
T Consensus 509 ~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQs 587 (1238)
T KOG1127|consen 509 KRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQS 587 (1238)
T ss_pred HHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHH
Confidence 45777777777765 4466778888899999999999888743332111 12233344445556666666666666
Q ss_pred Hhh---cCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCC--------
Q 037592 78 MEE---IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV-------- 146 (337)
Q Consensus 78 ~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------- 146 (337)
... .|...|..++.+|...|++..|.++|.++....+ .+...-....-..+..|++.+|...+.....
T Consensus 588 ALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP-~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~ 666 (1238)
T KOG1127|consen 588 ALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRP-LSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTG 666 (1238)
T ss_pred HhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCc-HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 655 3344555566666666666666666655554432 1222222222333445555555555443320
Q ss_pred -Cc-HHhHHHHHHHHHhCCCHhHHHHHHHH-------------------------------------------------H
Q 037592 147 -RN-LITWNSMISGFAQNGRGEEALRIFDD-------------------------------------------------M 175 (337)
Q Consensus 147 -~~-~~~~~~l~~~~~~~~~~~~a~~~~~~-------------------------------------------------m 175 (337)
.+ ..++-.+...+.-.|-..+|.+++++ .
T Consensus 667 q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~ 746 (1238)
T KOG1127|consen 667 QNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQL 746 (1238)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 00 00111111111111111111111111 1
Q ss_pred HhcCCCCC--------------------HhHHHHHHHHHhh-------cC-chhhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 037592 176 TEGGTKPD--------------------HVSFIGVLSACSH-------MG-LIDRGRKHFASMTKEYRIKPKIEHYNCMV 227 (337)
Q Consensus 176 ~~~~~~p~--------------------~~~~~~l~~~~~~-------~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 227 (337)
...+..|+ ..+|..+...|.+ .+ +...|+..+...++.. .-+..+|+.|.
T Consensus 747 e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~--ann~~~WnaLG 824 (1238)
T KOG1127|consen 747 EKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC--ANNEGLWNALG 824 (1238)
T ss_pred HhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh--hccHHHHHHHH
Confidence 11111111 1111111111111 11 1123444444443321 22333444433
Q ss_pred HHHHhcCChHHHHHHHHHh--cCCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhH
Q 037592 228 DLLGRAGLLEEAETLIENA--DCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDA 305 (337)
Q Consensus 228 ~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 305 (337)
.....|++.-|...|-+. ..+....+|..+...+.+..+++.|...|.....+.|.+...|......-...|+.-++
T Consensus 825 -Vlsg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~ 903 (1238)
T KOG1127|consen 825 -VLSGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIER 903 (1238)
T ss_pred -HhhccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHH
Confidence 334455666666655442 22334556666666777888888999999888889998888888777777778888888
Q ss_pred HHHHHH
Q 037592 306 FKIRTL 311 (337)
Q Consensus 306 ~~~~~~ 311 (337)
..+|..
T Consensus 904 ~~lfaH 909 (1238)
T KOG1127|consen 904 LILFAH 909 (1238)
T ss_pred HHHHHh
Confidence 887766
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.7e-05 Score=58.62 Aligned_cols=166 Identities=14% Similarity=0.097 Sum_probs=111.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCC--C-cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhc
Q 037592 121 ESALVDLYAKCGCVDFAHQIFLQMPV--R-NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHM 197 (337)
Q Consensus 121 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 197 (337)
|..++-+....|+.+.|...++++.. | +...-..-...+-..|++++|+++++.+.+.+ +.|.+++---+...-..
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~ 133 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQ 133 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHc
Confidence 33444555666777777777766552 2 22222222233456788889999998888875 33555666555555667
Q ss_pred CchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cCCCch-hHHHHHHHHH---hcCCChhHHH
Q 037592 198 GLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DCRHDS-SLWEVLLGAC---TTFRNAHVAE 272 (337)
Q Consensus 198 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~-~~~~~l~~~~---~~~g~~~~a~ 272 (337)
|+.-+|++-+...++ .+..|...|..+...|...|++++|.-.++++ -..|.. ..+..+...+ +...+.+.+.
T Consensus 134 GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ar 211 (289)
T KOG3060|consen 134 GKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELAR 211 (289)
T ss_pred CCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 777788888888766 44788889999999999999999999999885 344543 3444555442 3344678888
Q ss_pred HHHHHHHhcCCCccchH
Q 037592 273 RVAKKIMELKPDCHLSY 289 (337)
Q Consensus 273 ~~~~~~~~~~p~~~~~~ 289 (337)
+.|.+++++.|.+...+
T Consensus 212 kyy~~alkl~~~~~ral 228 (289)
T KOG3060|consen 212 KYYERALKLNPKNLRAL 228 (289)
T ss_pred HHHHHHHHhChHhHHHH
Confidence 99999999888544433
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.6e-06 Score=60.12 Aligned_cols=97 Identities=21% Similarity=0.196 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHh-cC-CCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHH
Q 037592 220 IEHYNCMVDLLGRAGLLEEAETLIENA-DC-RHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297 (337)
Q Consensus 220 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 297 (337)
......++..+...|++++|.+.|+.. .. +.+...|..+...+...|+++.|...++++.+..|+++..+..++.++.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 345566667777778888888887764 22 2345566667777777788888888888877777777777777788888
Q ss_pred HcCChhhHHHHHHHHHHhC
Q 037592 298 AVGRWNDAFKIRTLMKYSG 316 (337)
Q Consensus 298 ~~g~~~~A~~~~~~m~~~~ 316 (337)
..|++++|...|++..+..
T Consensus 97 ~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 97 ALGEPESALKALDLAIEIC 115 (135)
T ss_pred HcCCHHHHHHHHHHHHHhc
Confidence 8888888888887776654
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.5e-05 Score=59.30 Aligned_cols=163 Identities=13% Similarity=0.099 Sum_probs=126.9
Q ss_pred hHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHH-HHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 037592 151 TWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGV-LSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDL 229 (337)
Q Consensus 151 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 229 (337)
.|..++-+....|+.+-|..+++++... + |.+.-...+ .--+-..|++++|+++++.++++. +.|..++-.=+..
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd--pt~~v~~KRKlAi 129 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD--PTDTVIRKRKLAI 129 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC--cchhHHHHHHHHH
Confidence 4555666777889999999999998775 3 444333222 223446799999999999998764 6677777776777
Q ss_pred HHhcCChHHHHHHHHHh--cCCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcC---Chhh
Q 037592 230 LGRAGLLEEAETLIENA--DCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG---RWND 304 (337)
Q Consensus 230 ~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~ 304 (337)
....|+.-+|++-+.+. ....|...|.-+...|...|++++|.-.++++.=+.|-++..+..+.+.+.-.| +.+.
T Consensus 130 lka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 130 LKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred HHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 77788877888776652 244588899999999999999999999999999999999999999998876655 5667
Q ss_pred HHHHHHHHHHhCC
Q 037592 305 AFKIRTLMKYSGV 317 (337)
Q Consensus 305 A~~~~~~m~~~~~ 317 (337)
|.++|.+..+...
T Consensus 210 arkyy~~alkl~~ 222 (289)
T KOG3060|consen 210 ARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHHHHhCh
Confidence 8888888776544
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.1e-05 Score=58.85 Aligned_cols=110 Identities=12% Similarity=0.074 Sum_probs=54.6
Q ss_pred CCChhHHHHHHHHHhh--cCc----ccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCC--chhHHHHHHHHHhcCCHHH
Q 037592 65 TGDFESVIRIFREMEE--IDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD--VIIESALVDLYAKCGCVDF 136 (337)
Q Consensus 65 ~g~~~~A~~~~~~~~~--~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~ 136 (337)
.++...+...++.+.+ |+. .....+...+...|++++|...|+.+....+.++ ......|..++...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 5555555555555555 222 1122233445555566666666665555442222 1223334555556666666
Q ss_pred HHHHHhcCCCC--cHHhHHHHHHHHHhCCCHhHHHHHHHH
Q 037592 137 AHQIFLQMPVR--NLITWNSMISGFAQNGRGEEALRIFDD 174 (337)
Q Consensus 137 A~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~ 174 (337)
|+..++....+ ....+......|.+.|++++|...|+.
T Consensus 104 Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666554322 223444455556666666666666554
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.3e-05 Score=57.20 Aligned_cols=124 Identities=12% Similarity=0.105 Sum_probs=53.3
Q ss_pred HHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCC--HhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCC--HHHHHHHH
Q 037592 152 WNSMISGFAQNGRGEEALRIFDDMTEGGTKPD--HVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPK--IEHYNCMV 227 (337)
Q Consensus 152 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~ 227 (337)
|..++..+ ..++...+...++.+.+...... ......+...+...|++++|...|+.++.. ...|. ......|.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHH
Confidence 44444443 25555555555555555422110 112222334445555555555555555432 11111 12233344
Q ss_pred HHHHhcCChHHHHHHHHHhcCC-CchhHHHHHHHHHhcCCChhHHHHHHHH
Q 037592 228 DLLGRAGLLEEAETLIENADCR-HDSSLWEVLLGACTTFRNAHVAERVAKK 277 (337)
Q Consensus 228 ~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 277 (337)
..+...|++++|+..++..... ..+..+......+...|++++|...|++
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5555555555555555443211 1222233333445555555555555544
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.39 E-value=6.7e-07 Score=47.42 Aligned_cols=33 Identities=48% Similarity=0.905 Sum_probs=27.9
Q ss_pred hHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCC
Q 037592 151 TWNSMISGFAQNGRGEEALRIFDDMTEGGTKPD 183 (337)
Q Consensus 151 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 183 (337)
+|+++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688888888888888888888888888888876
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.6e-05 Score=55.80 Aligned_cols=97 Identities=9% Similarity=0.031 Sum_probs=42.5
Q ss_pred HHHHHHhhcCchhhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHh-cCCCc----hhHHHHHHHHH
Q 037592 189 GVLSACSHMGLIDRGRKHFASMTKEYRIKP-KIEHYNCMVDLLGRAGLLEEAETLIENA-DCRHD----SSLWEVLLGAC 262 (337)
Q Consensus 189 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~ 262 (337)
.+...+.+.|++++|.+.+..++....-.+ ....+..+..++.+.|++++|...|+.+ ...|+ ...+..+..++
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 344444455555555555555543211000 1223344445555555555555555542 11122 22333344444
Q ss_pred hcCCChhHHHHHHHHHHhcCCCc
Q 037592 263 TTFRNAHVAERVAKKIMELKPDC 285 (337)
Q Consensus 263 ~~~g~~~~a~~~~~~~~~~~p~~ 285 (337)
.+.|+.+.|...++++.+..|++
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~p~~ 109 (119)
T TIGR02795 87 QELGDKEKAKATLQQVIKRYPGS 109 (119)
T ss_pred HHhCChHHHHHHHHHHHHHCcCC
Confidence 45555555555555555555543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.4e-06 Score=53.48 Aligned_cols=65 Identities=18% Similarity=0.170 Sum_probs=58.3
Q ss_pred chhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcC-ChhhHHHHHHHHHHh
Q 037592 251 DSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG-RWNDAFKIRTLMKYS 315 (337)
Q Consensus 251 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~ 315 (337)
++..|..+...+...|++++|+..|+++++.+|+++..|..++.++...| ++++|++.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 45678888888999999999999999999999999999999999999999 799999999887764
|
... |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.2e-06 Score=57.27 Aligned_cols=52 Identities=19% Similarity=0.199 Sum_probs=24.5
Q ss_pred HHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHH
Q 037592 258 LLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRT 310 (337)
Q Consensus 258 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (337)
+..++.+.|++++|+.++++ .+.+|.+......++.++.+.|++++|+++++
T Consensus 31 la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 44445555555555555544 33334333344444555555555555555544
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.4e-05 Score=54.87 Aligned_cols=95 Identities=13% Similarity=-0.032 Sum_probs=56.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHh-cCCCc----hhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCc---cchHHHHH
Q 037592 222 HYNCMVDLLGRAGLLEEAETLIENA-DCRHD----SSLWEVLLGACTTFRNAHVAERVAKKIMELKPDC---HLSYVLLD 293 (337)
Q Consensus 222 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~ 293 (337)
++..++..+.+.|++++|.+.|+++ ...|+ ...+..+..++.+.|+++.|...++.+....|++ +.++..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 4455566666666666666666654 12222 2234445556666666666666666666655553 33455666
Q ss_pred HHHHHcCChhhHHHHHHHHHHhC
Q 037592 294 NVYRAVGRWNDAFKIRTLMKYSG 316 (337)
Q Consensus 294 ~~~~~~g~~~~A~~~~~~m~~~~ 316 (337)
.++.+.|++++|...++++.+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHC
Confidence 66666666666666666666654
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.33 E-value=9.4e-06 Score=54.07 Aligned_cols=92 Identities=21% Similarity=0.214 Sum_probs=64.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHh-cCCC-chhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcC
Q 037592 223 YNCMVDLLGRAGLLEEAETLIENA-DCRH-DSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300 (337)
Q Consensus 223 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 300 (337)
+..++..+...|++++|...+++. ...| +...+..+...+...|+++.|.+.+++.....|.+...+..++..+...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445566666777777777777763 2233 23455566666777778888888888877777776667777777888888
Q ss_pred ChhhHHHHHHHHHH
Q 037592 301 RWNDAFKIRTLMKY 314 (337)
Q Consensus 301 ~~~~A~~~~~~m~~ 314 (337)
++++|...+++..+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 88888887776654
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.3e-06 Score=46.00 Aligned_cols=33 Identities=39% Similarity=0.757 Sum_probs=25.2
Q ss_pred HhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCC
Q 037592 150 ITWNSMISGFAQNGRGEEALRIFDDMTEGGTKP 182 (337)
Q Consensus 150 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 182 (337)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777766
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=98.27 E-value=8.4e-05 Score=60.61 Aligned_cols=132 Identities=16% Similarity=0.243 Sum_probs=94.1
Q ss_pred HhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHH-HhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 037592 150 ITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSA-CSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVD 228 (337)
Q Consensus 150 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 228 (337)
.+|..++....+.+..+.|..+|.+..+.+. .+...|...+.. +...++.+.|.++|+..++.. +.+...|...+.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 4677788888888889999999999875422 233444444433 233566777999999987754 667778888888
Q ss_pred HHHhcCChHHHHHHHHHh-cCCCc----hhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCC
Q 037592 229 LLGRAGLLEEAETLIENA-DCRHD----SSLWEVLLGACTTFRNAHVAERVAKKIMELKPD 284 (337)
Q Consensus 229 ~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 284 (337)
.+...|+.+.|+.+|++. ..-|. ...|...+..-.+.|+.+.+.++.+++.+..|+
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 888999999999999874 22232 347888888888889999999999888887776
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.2e-05 Score=60.56 Aligned_cols=46 Identities=13% Similarity=0.056 Sum_probs=20.9
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcC
Q 037592 255 WEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300 (337)
Q Consensus 255 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 300 (337)
+..+...+...|++++|...++++.+..|++...+..++.++...|
T Consensus 75 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 120 (172)
T PRK02603 75 LYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRG 120 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcC
Confidence 3333444444444444444444444444444444444444444433
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.26 E-value=5.2e-06 Score=54.22 Aligned_cols=79 Identities=16% Similarity=0.215 Sum_probs=31.7
Q ss_pred CCHhHHHHHHHHHHhcCCC-CCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 037592 163 GRGEEALRIFDDMTEGGTK-PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241 (337)
Q Consensus 163 ~~~~~a~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 241 (337)
|+++.|+.+++++.+.... |+...+..+..++.+.|++++|..+++.. +.. +.+......++.++.+.|++++|++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~-~~~--~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKL-KLD--PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCH-THH--HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHh-CCC--CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4455555555555443221 12222333444445555555555555441 111 1112222333444455555555555
Q ss_pred HHH
Q 037592 242 LIE 244 (337)
Q Consensus 242 ~~~ 244 (337)
+|+
T Consensus 80 ~l~ 82 (84)
T PF12895_consen 80 ALE 82 (84)
T ss_dssp HHH
T ss_pred HHh
Confidence 444
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.4e-05 Score=65.80 Aligned_cols=129 Identities=12% Similarity=0.035 Sum_probs=69.6
Q ss_pred HHHHHHHHHhhcCchhhHHHHHHHHH---HhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHH-------hcC-CCchh
Q 037592 186 SFIGVLSACSHMGLIDRGRKHFASMT---KEYRIKP-KIEHYNCMVDLLGRAGLLEEAETLIEN-------ADC-RHDSS 253 (337)
Q Consensus 186 ~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~-------~~~-~~~~~ 253 (337)
.|..+.+.|.-.|+++.|+...+.-+ +++|-.. ....+..+..++.-.|+++.|.+.|+. ++. .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 34444444555566666665554321 2222221 134555666666667777777766653 221 12334
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHhcC------CCccchHHHHHHHHHHcCChhhHHHHHHHHHH
Q 037592 254 LWEVLLGACTTFRNAHVAERVAKKIMELK------PDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKY 314 (337)
Q Consensus 254 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 314 (337)
+..+|...|.-..++++|+.++.+-+.+. -....++..|..+|...|..++|+.+.+.-.+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 45556666666666677766665544311 11234666677777777777777666655443
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.25 E-value=5.1e-06 Score=51.26 Aligned_cols=59 Identities=17% Similarity=0.161 Sum_probs=47.6
Q ss_pred HHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhC
Q 037592 258 LLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSG 316 (337)
Q Consensus 258 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 316 (337)
+...+.+.|++++|+..|+++++..|+++..+..++.++...|++++|...|+++.+..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 34567788888888888888888888888888888888888888888888888887644
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.25 E-value=4.4e-05 Score=60.58 Aligned_cols=112 Identities=16% Similarity=0.084 Sum_probs=90.4
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cC-CCchhHHHHHHHHH-h--cCCChhHHHHHHHHHHhcCCCccchHHH
Q 037592 217 KPKIEHYNCMVDLLGRAGLLEEAETLIENA-DC-RHDSSLWEVLLGAC-T--TFRNAHVAERVAKKIMELKPDCHLSYVL 291 (337)
Q Consensus 217 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~-~--~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 291 (337)
+-|...|..|...|...|+.+.|..-|.+. .. .+++..+..+..++ . ......++..++++++..+|++..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 667899999999999999999999999874 22 23444455555552 2 3334678899999999999999999999
Q ss_pred HHHHHHHcCChhhHHHHHHHHHHhCCccCCCCcceec
Q 037592 292 LDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEA 328 (337)
Q Consensus 292 l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ 328 (337)
|...+...|++.+|...|+.|.+.....+|..+.|+-
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~ 269 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIER 269 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 9999999999999999999999988877776665543
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.2e-05 Score=67.90 Aligned_cols=104 Identities=13% Similarity=-0.000 Sum_probs=85.4
Q ss_pred HHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cCCC-chhHHHHHHHHHhcCCC
Q 037592 190 VLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DCRH-DSSLWEVLLGACTTFRN 267 (337)
Q Consensus 190 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~ 267 (337)
-...+...|+++.|+..|+++++.. +.+...|..+..+|...|++++|+..+++. ...| +...|..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~--P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD--PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 3456677899999999999997643 456788889999999999999999999974 4444 56678888889999999
Q ss_pred hhHHHHHHHHHHhcCCCccchHHHHHHH
Q 037592 268 AHVAERVAKKIMELKPDCHLSYVLLDNV 295 (337)
Q Consensus 268 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 295 (337)
++.|+..|++++++.|+++.....+..+
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999999999987665555444
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.21 E-value=3.3e-06 Score=44.37 Aligned_cols=33 Identities=27% Similarity=0.269 Sum_probs=30.5
Q ss_pred chHHHHHHHHHHcCChhhHHHHHHHHHHhCCcc
Q 037592 287 LSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKK 319 (337)
Q Consensus 287 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 319 (337)
.+|+.++.+|.+.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 579999999999999999999999999999886
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00016 Score=54.43 Aligned_cols=130 Identities=15% Similarity=0.134 Sum_probs=85.5
Q ss_pred HHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCC--HhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHH
Q 037592 149 LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPD--HVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCM 226 (337)
Q Consensus 149 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 226 (337)
...+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++++... +.+...+..+
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l 112 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN--PKQPSALNNI 112 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHH
Confidence 34566777777888888888888888876533332 3466667777888888888888888886532 3345666667
Q ss_pred HHHHHhcCChHHHHHHHHHhcCCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCC
Q 037592 227 VDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGR 301 (337)
Q Consensus 227 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 301 (337)
..++...|+...+..-++.. ...+++|.++++++.+.+|++ |..++.-+...|+
T Consensus 113 g~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 77777777766555433321 012577788888888888885 4455555544443
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.0029 Score=52.38 Aligned_cols=110 Identities=16% Similarity=0.218 Sum_probs=84.3
Q ss_pred hHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhcCCCchhHHHHHHHHHhc
Q 037592 185 VSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTT 264 (337)
Q Consensus 185 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~ 264 (337)
.+.+..+.-+...|+...|.++-.+. .+ |+...|...+.+|+..++|++-.++... + -.+..|..++.+|.+
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F----kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s-k--KsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEF----KV-PDKRFWWLKIKALAENKDWDELEKFAKS-K--KSPIGYEPFVEACLK 249 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHc----CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC-C--CCCCChHHHHHHHHH
Confidence 34555566677888888887776554 44 8888999999999999999998887654 2 244669999999999
Q ss_pred CCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHH
Q 037592 265 FRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTL 311 (337)
Q Consensus 265 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (337)
.|+..+|..+..++ .+..-+..|.+.|++.+|.+.--+
T Consensus 250 ~~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 250 YGNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred CCCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999998888761 124667888999999999766433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.15 E-value=5.1e-06 Score=43.91 Aligned_cols=33 Identities=21% Similarity=0.242 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHcCChhhHHHHHHHHHHhCCccC
Q 037592 288 SYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKM 320 (337)
Q Consensus 288 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 320 (337)
+|+.++.+|.+.|++++|.++|++|.+.|+.|+
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688999999999999999999999999999875
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.15 E-value=5e-05 Score=56.97 Aligned_cols=94 Identities=14% Similarity=-0.118 Sum_probs=71.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHh-cCCCc----hhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHH
Q 037592 219 KIEHYNCMVDLLGRAGLLEEAETLIENA-DCRHD----SSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLD 293 (337)
Q Consensus 219 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 293 (337)
....+..++..+...|++++|...|++. ...|+ ..++..+...+...|++++|+..++++.++.|.....+..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 3556677777788888888888888864 22222 346777778889999999999999999998888877787777
Q ss_pred HHHH-------HcCChhhHHHHHHHH
Q 037592 294 NVYR-------AVGRWNDAFKIRTLM 312 (337)
Q Consensus 294 ~~~~-------~~g~~~~A~~~~~~m 312 (337)
..+. ..|++++|...+++-
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 7777 778888776666554
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.0001 Score=62.35 Aligned_cols=102 Identities=9% Similarity=0.001 Sum_probs=81.6
Q ss_pred HHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 037592 155 MISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234 (337)
Q Consensus 155 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 234 (337)
....+...|++++|+..|+++++.... +...|..+..++...|++++|+..+++++... +.+...|..+..+|...|
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~--P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD--PSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHhC
Confidence 456677889999999999999986432 56677778889999999999999999997542 446778889999999999
Q ss_pred ChHHHHHHHHH-hcCCCchhHHHHHH
Q 037592 235 LLEEAETLIEN-ADCRHDSSLWEVLL 259 (337)
Q Consensus 235 ~~~~A~~~~~~-~~~~~~~~~~~~l~ 259 (337)
++++|...|++ +...|+.......+
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 99999999997 45566655444444
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.0042 Score=56.60 Aligned_cols=220 Identities=11% Similarity=0.051 Sum_probs=100.5
Q ss_pred HcCCChhHHHHHHHHHhh--cCcccHHHHHHH--HHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHH
Q 037592 63 CQTGDFESVIRIFREMEE--IDLFSFGIVLRA--CAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAH 138 (337)
Q Consensus 63 ~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 138 (337)
...+++.+|+....++.+ |+. .|..++.+ ..+.|..++|..+++.....+. .|..+...+-.+|.+.|+.++|.
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhhhhHHH
Confidence 345566666666666655 333 22233333 3455666666655555544443 35556666666666666666666
Q ss_pred HHHhcCCC--CcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcC-c---------hhhHHHH
Q 037592 139 QIFLQMPV--RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMG-L---------IDRGRKH 206 (337)
Q Consensus 139 ~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~-~---------~~~a~~~ 206 (337)
.+|++... |+..-...+..+|.+.+.+.+-.++--++-+. .+-+...|-+++......- . ..-|.+.
T Consensus 98 ~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m 176 (932)
T KOG2053|consen 98 HLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKM 176 (932)
T ss_pred HHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHH
Confidence 66666652 33333344445555555554443333333332 2222233333332222110 0 1224444
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH-hc-C--CCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcC
Q 037592 207 FASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIEN-AD-C--RHDSSLWEVLLGACTTFRNAHVAERVAKKIMELK 282 (337)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~-~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 282 (337)
.+.++++.|.--+..-..-....+...|.+++|.+++.. .. . ..+...-+.-+..+...+++.+..++..++....
T Consensus 177 ~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 177 VQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 444444432111111111122233445566666666532 21 1 1112222333444555666666666666666655
Q ss_pred CCc
Q 037592 283 PDC 285 (337)
Q Consensus 283 p~~ 285 (337)
+++
T Consensus 257 ~Dd 259 (932)
T KOG2053|consen 257 NDD 259 (932)
T ss_pred Ccc
Confidence 554
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.0035 Score=57.09 Aligned_cols=212 Identities=15% Similarity=0.094 Sum_probs=142.9
Q ss_pred HhcCChHHHHHHHHHcccCChh-hHHHHHH--HHHcCCChhHHHHHHHHHhh---cCcccHHHHHHHHHhhchhhhhHHH
Q 037592 32 GKCGLVDESHRVFDKMLKKNSV-SSSALLQ--GYCQTGDFESVIRIFREMEE---IDLFSFGIVLRACAGLAALRLGKEV 105 (337)
Q Consensus 32 ~~~~~~~~A~~~~~~~~~~~~~-~~~~l~~--~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~ 105 (337)
...+++..|.....++.+..+. .|...+. ...+.|+.++|..+++.... .|..|...+-.+|...++.++|..+
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHH
Confidence 4678899999998888443222 2333333 35789999999998888776 5667888899999999999999999
Q ss_pred HHHHHHhhCCCCchhHHHHHHHHHhcCCHHH----HHHHHhcCCCCcHHhHHHHHHHHHhCC-C---------HhHHHHH
Q 037592 106 HCQYIRRSGCKDVIIESALVDLYAKCGCVDF----AHQIFLQMPVRNLITWNSMISGFAQNG-R---------GEEALRI 171 (337)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~l~~~~~~~~-~---------~~~a~~~ 171 (337)
|++..+.. |+......+..+|.+.+.+.+ |.++++... .+...+.+.++.+.+.- . ..-|.+.
T Consensus 100 Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~p-k~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m 176 (932)
T KOG2053|consen 100 YERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKNFP-KRAYYFWSVISLILQSIFSENELLDPILLALAEKM 176 (932)
T ss_pred HHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-cccchHHHHHHHHHHhccCCcccccchhHHHHHHH
Confidence 99998874 557777888889999988765 566666444 34455555555555432 1 2335556
Q ss_pred HHHHHhcC-CCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 037592 172 FDDMTEGG-TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA 246 (337)
Q Consensus 172 ~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 246 (337)
++.+.+.+ .--+..-.......+...|.+++|..++..-....-.+-+...-+.-+..+...+++.+..++-.++
T Consensus 177 ~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 177 VQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 66666554 1112222222334456788999999999543333233344445556677888889998887776654
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00025 Score=62.77 Aligned_cols=61 Identities=23% Similarity=0.244 Sum_probs=32.5
Q ss_pred hHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHH
Q 037592 253 SLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKY 314 (337)
Q Consensus 253 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 314 (337)
..+..+.......|++++|...++++.+++|+ ...|..++.++...|+.++|.+.+++..+
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 33444433334445555555555555555554 45555555555555555555555555444
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00013 Score=60.24 Aligned_cols=252 Identities=12% Similarity=0.037 Sum_probs=153.5
Q ss_pred HHHHhcCChHHHHHHHHHcccCC-------hhhHHHHHHHHHcCCChhHHHHHHHHHhh---------cCcccHHHHHHH
Q 037592 29 DMYGKCGLVDESHRVFDKMLKKN-------SVSSSALLQGYCQTGDFESVIRIFREMEE---------IDLFSFGIVLRA 92 (337)
Q Consensus 29 ~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~l~~~ 92 (337)
.-+++.|+...-+.+|+..++.. ...|..|..+|.-.+++++|+++...=.. -...+...|...
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 45788888888888888875542 23356666666667777777776543221 112233344445
Q ss_pred HHhhchhhhhHHHHHHHHH----hhCC-CCchhHHHHHHHHHhcCC--------------------HHHHHHHHhcCC--
Q 037592 93 CAGLAALRLGKEVHCQYIR----RSGC-KDVIIESALVDLYAKCGC--------------------VDFAHQIFLQMP-- 145 (337)
Q Consensus 93 ~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~~~-- 145 (337)
+-..|.+++|...-.+-+. .|-. .....+..+...|...|+ ++.|.++|.+-.
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 5555666666544322221 1111 224455557777766554 223333333211
Q ss_pred -----C--CcHHhHHHHHHHHHhCCCHhHHHHHHHHHH----hcCCCC-CHhHHHHHHHHHhhcCchhhHHHHHHHHHHh
Q 037592 146 -----V--RNLITWNSMISGFAQNGRGEEALRIFDDMT----EGGTKP-DHVSFIGVLSACSHMGLIDRGRKHFASMTKE 213 (337)
Q Consensus 146 -----~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~----~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 213 (337)
. .-...|..|.+.|.-.|+++.|+..-+.-+ +.|-+. ....+..+.+++.-.|+++.|.+.|+..+.-
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 0 112456677777777889999987655322 223221 2346677788888889999999988875321
Q ss_pred ---cC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHH-------hc-CCCchhHHHHHHHHHhcCCChhHHHHHHHHHHh
Q 037592 214 ---YR-IKPKIEHYNCMVDLLGRAGLLEEAETLIEN-------AD-CRHDSSLWEVLLGACTTFRNAHVAERVAKKIME 280 (337)
Q Consensus 214 ---~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-------~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 280 (337)
.| -........+|...|.-..++++|+.++.+ ++ ..-....+-+|..++...|..++|+.+.+..++
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 11 122345667788888888889999988764 22 122456677888889999999999988877765
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00046 Score=56.54 Aligned_cols=91 Identities=14% Similarity=0.205 Sum_probs=41.7
Q ss_pred HHHHHHHhC-CCHhHHHHHHHHHHhc----CCCCC--HhHHHHHHHHHhhcCchhhHHHHHHHHHHhcC----CCCCH-H
Q 037592 154 SMISGFAQN-GRGEEALRIFDDMTEG----GTKPD--HVSFIGVLSACSHMGLIDRGRKHFASMTKEYR----IKPKI-E 221 (337)
Q Consensus 154 ~l~~~~~~~-~~~~~a~~~~~~m~~~----~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~-~ 221 (337)
.+...|... |++++|++.|++..+. | .+. ...+..+...+.+.|++++|.++|+++....- .+.+. .
T Consensus 119 ~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~ 197 (282)
T PF14938_consen 119 ELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKE 197 (282)
T ss_dssp HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHH
Confidence 344555555 5666666666655432 1 111 12344455556666666666666666543210 01111 1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHH
Q 037592 222 HYNCMVDLLGRAGLLEEAETLIEN 245 (337)
Q Consensus 222 ~~~~l~~~~~~~g~~~~A~~~~~~ 245 (337)
.+...+-++...|++..|.+.+++
T Consensus 198 ~~l~a~l~~L~~~D~v~A~~~~~~ 221 (282)
T PF14938_consen 198 YFLKAILCHLAMGDYVAARKALER 221 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 222333345556666666666665
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.09 E-value=8.1e-05 Score=58.89 Aligned_cols=98 Identities=20% Similarity=0.227 Sum_probs=68.8
Q ss_pred HHHHhCCCHhHHHHHHHHHHhcCCCC-CHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcC
Q 037592 157 SGFAQNGRGEEALRIFDDMTEGGTKP-DHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPK-IEHYNCMVDLLGRAG 234 (337)
Q Consensus 157 ~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g 234 (337)
.-..+.+++.+|+..|.+.++. .| |.+.|..-..+|++.|.++.|++-.+..+. +.|. ..+|..|..+|...|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~---iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS---IDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh---cChHHHHHHHHHHHHHHccC
Confidence 4456778888888888888774 44 444555566778888888888877777653 3443 567778888888888
Q ss_pred ChHHHHHHHHH-hcCCCchhHHHHHH
Q 037592 235 LLEEAETLIEN-ADCRHDSSLWEVLL 259 (337)
Q Consensus 235 ~~~~A~~~~~~-~~~~~~~~~~~~l~ 259 (337)
++++|.+.|++ +.+.|+-.+|-.=+
T Consensus 164 k~~~A~~aykKaLeldP~Ne~~K~nL 189 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPDNESYKSNL 189 (304)
T ss_pred cHHHHHHHHHhhhccCCCcHHHHHHH
Confidence 88888888876 56677666655444
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0015 Score=48.23 Aligned_cols=134 Identities=9% Similarity=0.021 Sum_probs=103.3
Q ss_pred CCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhc-CCCc---hhHH
Q 037592 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENAD-CRHD---SSLW 255 (337)
Q Consensus 180 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~---~~~~ 255 (337)
..|+...-..+..+..+.|+..+|...|++.+.. -+..|......+.++....+++..|...++++. .+|. +.+.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 4567666677888899999999999999998542 345677888888889999999999999998753 2232 2234
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHh
Q 037592 256 EVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYS 315 (337)
Q Consensus 256 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 315 (337)
-.+...+...|++..|+..|+.+....|+ +..-......+.++|+.++|..-+..+.+.
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~ 222 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVDT 222 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 44557789999999999999999998888 677777778888899888887666655543
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.09 E-value=6.9e-05 Score=49.72 Aligned_cols=91 Identities=14% Similarity=0.135 Sum_probs=45.3
Q ss_pred HHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 037592 152 WNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLG 231 (337)
Q Consensus 152 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 231 (337)
+..+...+...|++++|...++++.+... .+...+..+...+...++++.|.+.++..... .+.+..++..+...+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDP-DNADAYYNLAAAYYKLGKYEEALEDYEKALEL--DPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcchhHHHHHHHHHH
Confidence 34445555555666666666665554321 12234444445555555566666555555332 1223334445555555
Q ss_pred hcCChHHHHHHHHH
Q 037592 232 RAGLLEEAETLIEN 245 (337)
Q Consensus 232 ~~g~~~~A~~~~~~ 245 (337)
..|++++|...+++
T Consensus 80 ~~~~~~~a~~~~~~ 93 (100)
T cd00189 80 KLGKYEEALEAYEK 93 (100)
T ss_pred HHHhHHHHHHHHHH
Confidence 55555555555544
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00093 Score=51.77 Aligned_cols=167 Identities=12% Similarity=0.035 Sum_probs=88.6
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCC--C----cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhh
Q 037592 123 ALVDLYAKCGCVDFAHQIFLQMPV--R----NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSH 196 (337)
Q Consensus 123 ~l~~~~~~~g~~~~A~~~~~~~~~--~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 196 (337)
.....+...|++++|...|+++.. | -..+...++.++.+.|++++|...+++..+.-+.-....+...+.+.+.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~ 89 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSY 89 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHH
Confidence 344455666666666666666651 1 1234445666677777777777777776654222111112222222111
Q ss_pred c-------------CchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhcCCCchhHHHHHHHHHh
Q 037592 197 M-------------GLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACT 263 (337)
Q Consensus 197 ~-------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~ 263 (337)
- +....|... +..++.-|=...-..+|...+..+...-... --.+...|.
T Consensus 90 ~~~~~~~~~~~~D~~~~~~A~~~----------------~~~li~~yP~S~y~~~A~~~l~~l~~~la~~-e~~ia~~Y~ 152 (203)
T PF13525_consen 90 YKQIPGILRSDRDQTSTRKAIEE----------------FEELIKRYPNSEYAEEAKKRLAELRNRLAEH-ELYIARFYY 152 (203)
T ss_dssp HHHHHHHH-TT---HHHHHHHHH----------------HHHHHHH-TTSTTHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHhCccchhcccChHHHHHHHHH----------------HHHHHHHCcCchHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 1 111222233 3333444444444555555544432111111 112446689
Q ss_pred cCCChhHHHHHHHHHHhcCCCcc---chHHHHHHHHHHcCChhhHH
Q 037592 264 TFRNAHVAERVAKKIMELKPDCH---LSYVLLDNVYRAVGRWNDAF 306 (337)
Q Consensus 264 ~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~ 306 (337)
+.|.+..|..-++.+++..|+++ .+...++.+|.+.|..+.|.
T Consensus 153 ~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 153 KRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp CTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 99999999999999999988864 35678888999999887554
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=98.07 E-value=6e-06 Score=42.26 Aligned_cols=30 Identities=53% Similarity=0.891 Sum_probs=21.6
Q ss_pred hHHHHHHHHHhCCCHhHHHHHHHHHHhcCC
Q 037592 151 TWNSMISGFAQNGRGEEALRIFDDMTEGGT 180 (337)
Q Consensus 151 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 180 (337)
+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 577777777777777777777777776653
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0001 Score=53.18 Aligned_cols=89 Identities=10% Similarity=0.037 Sum_probs=44.1
Q ss_pred hhHHHHHHHHHcCCChhHHHHHHHHHhh--c-CcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 037592 53 VSSSALLQGYCQTGDFESVIRIFREMEE--I-DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYA 129 (337)
Q Consensus 53 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 129 (337)
.....+...+...|++++|.++|+-+.. | +..-|..|..++-..|++++|+..|..+....+ .++..+..+..++.
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L 114 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHH
Confidence 3334444445555555555555555544 2 222334444444455555555555555555443 44444445555555
Q ss_pred hcCCHHHHHHHHh
Q 037592 130 KCGCVDFAHQIFL 142 (337)
Q Consensus 130 ~~g~~~~A~~~~~ 142 (337)
..|+.+.|++.|+
T Consensus 115 ~lG~~~~A~~aF~ 127 (157)
T PRK15363 115 ACDNVCYAIKALK 127 (157)
T ss_pred HcCCHHHHHHHHH
Confidence 5555555555544
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00081 Score=53.55 Aligned_cols=176 Identities=12% Similarity=0.070 Sum_probs=101.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCC--CCcH-H---hHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHH
Q 037592 121 ESALVDLYAKCGCVDFAHQIFLQMP--VRNL-I---TWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSAC 194 (337)
Q Consensus 121 ~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~-~---~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 194 (337)
+......+...|++++|.+.|+++. .|+. . ..-.++.+|.+.+++++|...+++..+..+.-....+...+.+.
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~ 114 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGL 114 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHH
Confidence 3334555666777777777777776 2222 1 22345667777888888888888777753222222232333332
Q ss_pred hh--cC---------------c---hhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhcCCCchhH
Q 037592 195 SH--MG---------------L---IDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSL 254 (337)
Q Consensus 195 ~~--~~---------------~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 254 (337)
+. .+ + ...|+..|+.+++.+ |+ ..-..+|...+..+...--..
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y---P~-------------S~ya~~A~~rl~~l~~~la~~- 177 (243)
T PRK10866 115 TNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY---PN-------------SQYTTDATKRLVFLKDRLAKY- 177 (243)
T ss_pred hhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC---cC-------------ChhHHHHHHHHHHHHHHHHHH-
Confidence 21 11 1 123444444444331 22 222334443333322111111
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHhcCCCc---cchHHHHHHHHHHcCChhhHHHHHHHHH
Q 037592 255 WEVLLGACTTFRNAHVAERVAKKIMELKPDC---HLSYVLLDNVYRAVGRWNDAFKIRTLMK 313 (337)
Q Consensus 255 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 313 (337)
--.+..-|.+.|.+..|..-++.+++..|++ ..+...++.+|...|..++|..+...+.
T Consensus 178 e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 178 ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 1133456889999999999999999977775 3467788899999999999998876654
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0051 Score=50.93 Aligned_cols=258 Identities=12% Similarity=0.071 Sum_probs=141.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHcccCChhhHHHHHHHHHcCCChhHHHHHHHHHhh-cCcc-cHHHHHHHHHhhchhh
Q 037592 23 VESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEE-IDLF-SFGIVLRACAGLAALR 100 (337)
Q Consensus 23 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~-~~~~l~~~~~~~~~~~ 100 (337)
+|..+...-...|+.+-|..+++.=+.+. .-+..+.+.|+.+.|+ .+..+ -|.. +|..++..-....
T Consensus 2 S~a~IA~~A~~~GR~~LA~~LL~~Ep~~~-----~qVplLL~m~e~e~AL---~kAi~SgD~DLi~~vLl~L~~~l~--- 70 (319)
T PF04840_consen 2 SYAEIARKAYEEGRPKLATKLLELEPRAS-----KQVPLLLKMGEDELAL---NKAIESGDTDLIYLVLLHLKRKLS--- 70 (319)
T ss_pred CHHHHHHHHHHcChHHHHHHHHHcCCChH-----HHHHHHhcCCchHHHH---HHHHHcCCccHHHHHHHHHHHhCC---
Confidence 46667777788999999999886543321 1233445555555552 22222 2222 2333332211111
Q ss_pred hhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhc-C
Q 037592 101 LGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG-G 179 (337)
Q Consensus 101 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~ 179 (337)
..-|..++... |.. ..+...|++..+.+.-..+|.+-..........+-.++.. .+.+.-...+....+. +
T Consensus 71 --~s~f~~il~~~--p~a---~~l~~~~~r~~~~~~L~~~y~q~d~~~~~a~~~l~~~~~~-~~~~~~~~~L~~a~~~y~ 142 (319)
T PF04840_consen 71 --LSQFFKILNQN--PVA---SNLYKKYCREQDRELLKDFYYQEDRFQELANLHLQEALSQ-KDVEEKISFLKQAQKLYS 142 (319)
T ss_pred --HHHHHHHHHhC--cch---HHHHHHHHHhccHHHHHHHHHhcchHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHH
Confidence 11122333322 221 2345566666666666666654433222333333333332 3444444444433321 0
Q ss_pred CCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhcCCCchhHHHHHH
Q 037592 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLL 259 (337)
Q Consensus 180 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~ 259 (337)
-..+......++.-.. +-.++-+++.+..+......+.+..+.-+...|+...|.++-.+.++ |+...|...+
T Consensus 143 ~~k~~~f~~~~~e~q~------~Ll~~Q~~Le~~~~~~f~~~Sl~~Ti~~li~~~~~k~A~kl~k~Fkv-~dkrfw~lki 215 (319)
T PF04840_consen 143 KSKNDAFEAKLIEEQI------KLLEYQKELEEKYNTNFVGLSLNDTIRKLIEMGQEKQAEKLKKEFKV-PDKRFWWLKI 215 (319)
T ss_pred hcchhHHHHHHHHHHH------HHHHHHHHHHHHhccchhcCCHHHHHHHHHHCCCHHHHHHHHHHcCC-cHHHHHHHHH
Confidence 1111111112221111 11122222222223222233445556777889999999999998876 6888999999
Q ss_pred HHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHH
Q 037592 260 GACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTL 311 (337)
Q Consensus 260 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (337)
.+++..+++++..++... . .+|..|...+.+|.+.|+..+|..++.+
T Consensus 216 ~aLa~~~~w~eL~~fa~s---k--KsPIGyepFv~~~~~~~~~~eA~~yI~k 262 (319)
T PF04840_consen 216 KALAENKDWDELEKFAKS---K--KSPIGYEPFVEACLKYGNKKEASKYIPK 262 (319)
T ss_pred HHHHhcCCHHHHHHHHhC---C--CCCCChHHHHHHHHHCCCHHHHHHHHHh
Confidence 999999999998887542 2 2368899999999999999999999877
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.5e-05 Score=61.71 Aligned_cols=109 Identities=15% Similarity=0.021 Sum_probs=86.8
Q ss_pred HHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH-hcCCCc-hhHHHHHHHHHhcCCChhH
Q 037592 193 ACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIEN-ADCRHD-SSLWEVLLGACTTFRNAHV 270 (337)
Q Consensus 193 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~-~~~~~~l~~~~~~~g~~~~ 270 (337)
-..+.+++.+|+..|.++++- .+.|...|..=..+|.+.|.++.|++-.+. +.+.|. ..+|..|..+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 456778999999999999742 244566677778899999999999988776 455554 5688999999999999999
Q ss_pred HHHHHHHHHhcCCCccchHHHHHHHHHHcCChh
Q 037592 271 AERVAKKIMELKPDCHLSYVLLDNVYRAVGRWN 303 (337)
Q Consensus 271 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 303 (337)
|++.|+++++++|++......|-.+-.+.+...
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 999999999999998766666666666666555
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.02 E-value=9.3e-06 Score=50.60 Aligned_cols=55 Identities=16% Similarity=0.202 Sum_probs=41.0
Q ss_pred hcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCC
Q 037592 263 TTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGV 317 (337)
Q Consensus 263 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 317 (337)
.+.|++++|++.|+++.+..|++...+..++.+|.+.|++++|..+++++.....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 56 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDP 56 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 3567788888888888888887777777888888888888888888777665443
|
... |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0004 Score=56.87 Aligned_cols=128 Identities=14% Similarity=0.168 Sum_probs=69.8
Q ss_pred hHHHHHHHHHhc-CCHHHHHHHHhcCC-----CCc----HHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCC-----CCH
Q 037592 120 IESALVDLYAKC-GCVDFAHQIFLQMP-----VRN----LITWNSMISGFAQNGRGEEALRIFDDMTEGGTK-----PDH 184 (337)
Q Consensus 120 ~~~~l~~~~~~~-g~~~~A~~~~~~~~-----~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-----p~~ 184 (337)
++..+...|... |++++|++.|++.. ... ...+..++..+.+.|++++|.++|++....... ++.
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 344455556665 67777777666654 111 234556677788888888888888887654221 111
Q ss_pred h-HHHHHHHHHhhcCchhhHHHHHHHHHHhc-CCCCC--HHHHHHHHHHHHh--cCChHHHHHHHHHhc
Q 037592 185 V-SFIGVLSACSHMGLIDRGRKHFASMTKEY-RIKPK--IEHYNCMVDLLGR--AGLLEEAETLIENAD 247 (337)
Q Consensus 185 ~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~--~~~~~~l~~~~~~--~g~~~~A~~~~~~~~ 247 (337)
. .+...+-++...|+...|.+.+++..... ++..+ ......|+.++-. ...++.|..-|+.+.
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 1 22223335556788888888888774221 22222 3445566666643 234566666666553
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.02 E-value=2.8e-05 Score=49.21 Aligned_cols=59 Identities=15% Similarity=0.117 Sum_probs=50.8
Q ss_pred HHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCCc
Q 037592 260 GACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVK 318 (337)
Q Consensus 260 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 318 (337)
..|.+.++++.|.+++++++..+|+++..+...+.++...|++++|...+++..+.+..
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 46778889999999999999999998888888999999999999999999988876653
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00024 Score=47.69 Aligned_cols=81 Identities=16% Similarity=0.204 Sum_probs=65.7
Q ss_pred hHHHHHHHHHhCCCHhHHHHHHHHHHhcCC-CCCHhHHHHHHHHHhhcC--------chhhHHHHHHHHHHhcCCCCCHH
Q 037592 151 TWNSMISGFAQNGRGEEALRIFDDMTEGGT-KPDHVSFIGVLSACSHMG--------LIDRGRKHFASMTKEYRIKPKIE 221 (337)
Q Consensus 151 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~ 221 (337)
+-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-..+.+|+.|+.. +++|+..
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHH
Confidence 344566677777999999999999999999 899999999998877542 344677888888655 8999999
Q ss_pred HHHHHHHHHHh
Q 037592 222 HYNCMVDLLGR 232 (337)
Q Consensus 222 ~~~~l~~~~~~ 232 (337)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 99999888765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.97 E-value=4.6e-05 Score=46.93 Aligned_cols=60 Identities=22% Similarity=0.211 Sum_probs=40.4
Q ss_pred HHHHHHhcCChHHHHHHHHHh-cCCC-chhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCc
Q 037592 226 MVDLLGRAGLLEEAETLIENA-DCRH-DSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDC 285 (337)
Q Consensus 226 l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 285 (337)
+...+...|++++|.+.|+++ ...| +...+..+..++...|++++|...|+++++..|++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 455667777777777777764 3334 45556666677777778888887777777777775
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0057 Score=48.73 Aligned_cols=189 Identities=12% Similarity=0.065 Sum_probs=94.8
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHHhh--cCcccH----HHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHH
Q 037592 51 NSVSSSALLQGYCQTGDFESVIRIFREMEE--IDLFSF----GIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESAL 124 (337)
Q Consensus 51 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 124 (337)
+...+......+...|++++|.+.|+++.. |+.... ..++.++.+.+++++|...+++.++..+.....-+...
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 444444555566778888888888888877 554322 34556677788888888888888877654333333222
Q ss_pred HHHHHhcCCHHHHHHHHhcC---C--CCcH-------HhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHH
Q 037592 125 VDLYAKCGCVDFAHQIFLQM---P--VRNL-------ITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLS 192 (337)
Q Consensus 125 ~~~~~~~g~~~~A~~~~~~~---~--~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 192 (337)
+.+.+.... ....|... . ..|. ..+..++.-|=.+.-..+|...+..+... + -..- ..+..
T Consensus 111 ~~g~~~~~~---~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~-l--a~~e-~~ia~ 183 (243)
T PRK10866 111 MRGLTNMAL---DDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDR-L--AKYE-LSVAE 183 (243)
T ss_pred HHHHhhhhc---chhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHH-H--HHHH-HHHHH
Confidence 322221000 00011111 0 0111 12333444444444444444433333221 0 0011 12445
Q ss_pred HHhhcCchhhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 037592 193 ACSHMGLIDRGRKHFASMTKEYRIKP-KIEHYNCMVDLLGRAGLLEEAETLIENA 246 (337)
Q Consensus 193 ~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 246 (337)
.|.+.|.+..|..-++.+++...-.| .......++.+|...|..++|..+...+
T Consensus 184 ~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 184 YYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 56666666666666666665432211 2344455566666666666666655443
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0075 Score=49.92 Aligned_cols=281 Identities=14% Similarity=0.078 Sum_probs=184.1
Q ss_pred HHHHHHHHH--hcCChHHHHHHHHHc---ccCChhhHHHHHH--HHHcCCChhHHHHHHHHHhh-cCccc--HHHHHHHH
Q 037592 24 ESSLVDMYG--KCGLVDESHRVFDKM---LKKNSVSSSALLQ--GYCQTGDFESVIRIFREMEE-IDLFS--FGIVLRAC 93 (337)
Q Consensus 24 ~~~l~~~~~--~~~~~~~A~~~~~~~---~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~-~~~~~--~~~l~~~~ 93 (337)
|..|-..+. ..|+-..|.++-.+. +..|....-.++. +-.-.|+++.|.+-|+.|.. |.... ...|.-..
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleA 164 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEA 164 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHH
Confidence 444444443 457888888777665 3445555555543 44567999999999999987 43322 22333344
Q ss_pred HhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC-----CCcHH--hHHHHHHHHH---hCC
Q 037592 94 AGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP-----VRNLI--TWNSMISGFA---QNG 163 (337)
Q Consensus 94 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~--~~~~l~~~~~---~~~ 163 (337)
.+.|+.+-|.++-+..-...+ .-.-.+...+...+..|+|+.|+++++.-. .++.. .--.|+.+-. -..
T Consensus 165 qr~GareaAr~yAe~Aa~~Ap-~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~lda 243 (531)
T COG3898 165 QRLGAREAARHYAERAAEKAP-QLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDA 243 (531)
T ss_pred HhcccHHHHHHHHHHHHhhcc-CCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcC
Confidence 567888888888887776654 335566778899999999999999998765 34432 1122222111 123
Q ss_pred CHhHHHHHHHHHHhcCCCCCHhHHHH-HHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHH--H
Q 037592 164 RGEEALRIFDDMTEGGTKPDHVSFIG-VLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA--E 240 (337)
Q Consensus 164 ~~~~a~~~~~~m~~~~~~p~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A--~ 240 (337)
+...|...-.+..+ +.|+..--.. -..++.+.|+..++-.+++.+-+. .|.+..+.. ..+.+.|+.... .
T Consensus 244 dp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~l--Y~~ar~gdta~dRlk 316 (531)
T COG3898 244 DPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIALL--YVRARSGDTALDRLK 316 (531)
T ss_pred ChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHHH--HHHhcCCCcHHHHHH
Confidence 56777776666555 5666554333 347788999999999999999754 566655543 234556653322 1
Q ss_pred HH--HHHhcCCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHH-HcCChhhHHHHHHHHHH
Q 037592 241 TL--IENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR-AVGRWNDAFKIRTLMKY 314 (337)
Q Consensus 241 ~~--~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~ 314 (337)
+. ++.|+ +.+..+.-.+..+....|++..|..-.+.+....|. ...|..|.+.-. ..|+-.++...+-+-.+
T Consensus 317 Ra~~L~slk-~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 317 RAKKLESLK-PNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHhcC-ccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 11 22232 234556666778888999999999999999899999 678888877654 44898888887765544
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00067 Score=60.09 Aligned_cols=140 Identities=10% Similarity=0.022 Sum_probs=99.6
Q ss_pred CCcHHhHHHHHHHHHh--C---CCHhHHHHHHHHHHhcCCCCCH-hHHHHHHHHHhhcC--------chhhHHHHHHHHH
Q 037592 146 VRNLITWNSMISGFAQ--N---GRGEEALRIFDDMTEGGTKPDH-VSFIGVLSACSHMG--------LIDRGRKHFASMT 211 (337)
Q Consensus 146 ~~~~~~~~~l~~~~~~--~---~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~--------~~~~a~~~~~~~~ 211 (337)
..+...|...+++... . ++..+|..+|++..+. .|+. ..+..+..++.... ++..+.+......
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 3467888888877543 2 2377999999999984 5654 34444444343221 1233444444432
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH-hcCCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccc
Q 037592 212 KEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIEN-ADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHL 287 (337)
Q Consensus 212 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 287 (337)
.....+.++..+..+.......|++++|...+++ +...|+...|..+...+...|++++|...++++..++|.++.
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 2112344567788887777788999999999997 456788888999999999999999999999999999999653
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0028 Score=46.84 Aligned_cols=123 Identities=15% Similarity=0.121 Sum_probs=80.8
Q ss_pred CCCchhHHHHHHHHHhcCCHHHHHHHHhcCC----CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcC---CCCCHhHH
Q 037592 115 CKDVIIESALVDLYAKCGCVDFAHQIFLQMP----VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG---TKPDHVSF 187 (337)
Q Consensus 115 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~---~~p~~~~~ 187 (337)
.|+......|..+..+.|+..+|...|++.. ..|......+.++....+++..|...++++.+.. ..|| +.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 3566666667777777777777777777765 3466666677777777777777777777776642 2232 33
Q ss_pred HHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 037592 188 IGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETL 242 (337)
Q Consensus 188 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 242 (337)
..+...+...|....|..-|+.++ ..-|+..........+.++|+.++|..-
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~---~~ypg~~ar~~Y~e~La~qgr~~ea~aq 215 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAI---SYYPGPQARIYYAEMLAKQGRLREANAQ 215 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHH---HhCCCHHHHHHHHHHHHHhcchhHHHHH
Confidence 445566777777777777777775 2356655555555667777766665543
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00022 Score=53.49 Aligned_cols=59 Identities=12% Similarity=0.027 Sum_probs=28.6
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHhh--cCc----ccHHHHHHHHHhhchhhhhHHHHHHHHHh
Q 037592 54 SSSALLQGYCQTGDFESVIRIFREMEE--IDL----FSFGIVLRACAGLAALRLGKEVHCQYIRR 112 (337)
Q Consensus 54 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 112 (337)
.|..++..+...|++++|+..|++... ++. .++..+..++...|++++|...+++.+..
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344455555555555555555555543 221 13444444444555555555555544443
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.86 E-value=2.1e-05 Score=40.21 Aligned_cols=30 Identities=23% Similarity=0.461 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHcCChhhHHHHHHHHHHhCC
Q 037592 288 SYVLLDNVYRAVGRWNDAFKIRTLMKYSGV 317 (337)
Q Consensus 288 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 317 (337)
+|+.++.+|.+.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 577788888888888888888888877764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00056 Score=55.82 Aligned_cols=124 Identities=10% Similarity=0.006 Sum_probs=58.4
Q ss_pred HHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHh-cCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHh
Q 037592 86 FGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAK-CGCVDFAHQIFLQMP---VRNLITWNSMISGFAQ 161 (337)
Q Consensus 86 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~ 161 (337)
|..+++...+.+..+.|..+|.++++.+. .+..+|...+..-.+ .++.+.|..+|+... ..+...|...+..+..
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 44455555555555555555555553221 233444443333222 344444555555554 3344555555555555
Q ss_pred CCCHhHHHHHHHHHHhcCCCCCH---hHHHHHHHHHhhcCchhhHHHHHHHHH
Q 037592 162 NGRGEEALRIFDDMTEGGTKPDH---VSFIGVLSACSHMGLIDRGRKHFASMT 211 (337)
Q Consensus 162 ~~~~~~a~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~ 211 (337)
.|+.+.|..+|++.... +.++. ..|...+..-.+.|+++.+.++.+++.
T Consensus 83 ~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~ 134 (280)
T PF05843_consen 83 LNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAE 134 (280)
T ss_dssp TT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHH
T ss_pred hCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55555555555555443 22221 245555555555555555555555553
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00012 Score=45.51 Aligned_cols=51 Identities=16% Similarity=0.117 Sum_probs=39.1
Q ss_pred HhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC
Q 037592 94 AGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP 145 (337)
Q Consensus 94 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 145 (337)
.+.|++++|.++++++....+ .+..++..++.+|.+.|++++|..+++++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNP-DNPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTT-TSHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred hhccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456788888888888887765 467777778888888888888888888877
|
... |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00031 Score=51.00 Aligned_cols=89 Identities=13% Similarity=-0.013 Sum_probs=62.1
Q ss_pred HHHHHHhcCChHHHHHHHHHhc--CCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChh
Q 037592 226 MVDLLGRAGLLEEAETLIENAD--CRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWN 303 (337)
Q Consensus 226 l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 303 (337)
...-+...|++++|..+|.-+- ..-+...|..|..++...+++++|+..|..+..+.++++..+...+.+|...|+.+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence 3444556777777777777532 23345556666677777777777777777777777777777777777777777777
Q ss_pred hHHHHHHHHHH
Q 037592 304 DAFKIRTLMKY 314 (337)
Q Consensus 304 ~A~~~~~~m~~ 314 (337)
.|...|+...+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 77777776665
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00029 Score=59.97 Aligned_cols=108 Identities=13% Similarity=0.097 Sum_probs=60.3
Q ss_pred CCchhHHHHHHHHHhcCCHHHHHHHHhcCC-CC-----cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHH
Q 037592 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMP-VR-----NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIG 189 (337)
Q Consensus 116 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 189 (337)
.+......+++......+++.+..++-+.. .| -..|..++++.|...|..++++.+++.=...|+-||..+++.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 344444555555555555555655555544 11 122344666666666666666666666666666666666666
Q ss_pred HHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHH
Q 037592 190 VLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYN 224 (337)
Q Consensus 190 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 224 (337)
+++.+.+.|++..|.++...|..+ +...++.++.
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQ-e~~~~~~t~~ 177 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQ-EEFDNPSTQA 177 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHh-hccCCchHHH
Confidence 666666666666666666655433 3334444443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.014 Score=50.38 Aligned_cols=142 Identities=12% Similarity=0.087 Sum_probs=76.2
Q ss_pred hhHHHHHHHHHhh----cCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCC-CchhHHHHHHHHHhcCCHHHHHHHHh
Q 037592 68 FESVIRIFREMEE----IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-DVIIESALVDLYAKCGCVDFAHQIFL 142 (337)
Q Consensus 68 ~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 142 (337)
.+...+.++++.. .-..+|...+..-.+..-+..|..+|.++.+.+..+ .+.+.++++..|+ +++..-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 4445555555544 112245555555555566666666666666655544 4555555555544 355556666665
Q ss_pred cCC--CCc-HHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCH--hHHHHHHHHHhhcCchhhHHHHHHHH
Q 037592 143 QMP--VRN-LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDH--VSFIGVLSACSHMGLIDRGRKHFASM 210 (337)
Q Consensus 143 ~~~--~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~ 210 (337)
--. -+| +.--...+.-+...|+-..+..+|++....+++|+. ..|..++..-+.-|++..+.++-++.
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~ 498 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRR 498 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 443 122 222334445555556666666666666655444433 35666665555666666666555554
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0017 Score=45.09 Aligned_cols=92 Identities=16% Similarity=0.160 Sum_probs=60.1
Q ss_pred HHHHHHHhCCCHhHHHHHHHHHHhcCCCCCH--hHHHHHHHHHhhcCchhhHHHHHHHHHHhcCC-CCCHHHHHHHHHHH
Q 037592 154 SMISGFAQNGRGEEALRIFDDMTEGGTKPDH--VSFIGVLSACSHMGLIDRGRKHFASMTKEYRI-KPKIEHYNCMVDLL 230 (337)
Q Consensus 154 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~ 230 (337)
.+..++-..|+.++|+.+|++....|..... ..+..+...+...|++++|..+++.....+.- +.+......+..++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 3455667778888888888888887765442 34455667777888888888888887654211 01223333445567
Q ss_pred HhcCChHHHHHHHHH
Q 037592 231 GRAGLLEEAETLIEN 245 (337)
Q Consensus 231 ~~~g~~~~A~~~~~~ 245 (337)
...|+.++|...+-.
T Consensus 86 ~~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 86 YNLGRPKEALEWLLE 100 (120)
T ss_pred HHCCCHHHHHHHHHH
Confidence 778888888877654
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00015 Score=45.16 Aligned_cols=64 Identities=20% Similarity=0.166 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHh-cCCC-chhHHHHHHHHHhcCC-ChhHHHHHHHHHHhcCC
Q 037592 220 IEHYNCMVDLLGRAGLLEEAETLIENA-DCRH-DSSLWEVLLGACTTFR-NAHVAERVAKKIMELKP 283 (337)
Q Consensus 220 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~p 283 (337)
..+|..+...+...|++++|+..|++. ...| +...|..+..++...| ++++|++.++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 455666666677777777777777652 2222 4455666666677776 57777777777776665
|
... |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00062 Score=54.67 Aligned_cols=99 Identities=10% Similarity=0.046 Sum_probs=52.4
Q ss_pred HHHHHHHHhhcCchhhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhc-CCCc----hhHHHHHHH
Q 037592 187 FIGVLSACSHMGLIDRGRKHFASMTKEYRIKP-KIEHYNCMVDLLGRAGLLEEAETLIENAD-CRHD----SSLWEVLLG 260 (337)
Q Consensus 187 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~ 260 (337)
|...+....+.|++++|...|+.+++.+.-.+ .+..+..++..|...|++++|...|+.+- ..|+ ...+-.+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 33333333445666666666666655421110 02455556666666666666666666541 1121 222333344
Q ss_pred HHhcCCChhHHHHHHHHHHhcCCCc
Q 037592 261 ACTTFRNAHVAERVAKKIMELKPDC 285 (337)
Q Consensus 261 ~~~~~g~~~~a~~~~~~~~~~~p~~ 285 (337)
.+...|+.+.|...|+++++..|++
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 5556666666666666666666663
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.012 Score=45.63 Aligned_cols=173 Identities=12% Similarity=0.083 Sum_probs=72.9
Q ss_pred HHHHHHcCCChhHHHHHHHHHhh--cCcc----cHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhc
Q 037592 58 LLQGYCQTGDFESVIRIFREMEE--IDLF----SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKC 131 (337)
Q Consensus 58 l~~~~~~~g~~~~A~~~~~~~~~--~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 131 (337)
....+...|++.+|.+.|+.+.. |+.. +...++.++.+.|+++.|...+++.++.-+.....-+...+.+.+..
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence 33444555566666666665555 3322 23344455555566666666666655554322222122122221111
Q ss_pred CCHHHHHHHHhcCCCCc-------HHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHH
Q 037592 132 GCVDFAHQIFLQMPVRN-------LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGR 204 (337)
Q Consensus 132 g~~~~A~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 204 (337)
....... ...+| ...+..++.-|=.+.-..+|...+..+.+. + ... -..+...|.+.|.+..|.
T Consensus 91 ~~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~-l--a~~-e~~ia~~Y~~~~~y~aA~ 161 (203)
T PF13525_consen 91 KQIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR-L--AEH-ELYIARFYYKRGKYKAAI 161 (203)
T ss_dssp HHHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH-H--HHH-HHHHHHHHHCTT-HHHHH
T ss_pred HhCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH-H--HHH-HHHHHHHHHHcccHHHHH
Confidence 1111110 01111 123444555555555555555554444331 0 001 112445566677777777
Q ss_pred HHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCChHHH
Q 037592 205 KHFASMTKEYRIKPK-IEHYNCMVDLLGRAGLLEEA 239 (337)
Q Consensus 205 ~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A 239 (337)
.-++.+++...-.+. ......++.+|.+.|..+.|
T Consensus 162 ~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 162 IRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 777776654311111 23344555666666665533
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0088 Score=50.15 Aligned_cols=164 Identities=18% Similarity=0.069 Sum_probs=105.1
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHhcCCCC-------cHHhHHHHHHHHHh---CCCHhHHHHHHHHHHhcCCCCCHhHH
Q 037592 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVR-------NLITWNSMISGFAQ---NGRGEEALRIFDDMTEGGTKPDHVSF 187 (337)
Q Consensus 118 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~ 187 (337)
..+...++-.|....+++..+++++.+... ....-...+.++-+ .|+.++|++++..+......++..++
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 344445666789999999999999998843 22233344556666 89999999999997666677788888
Q ss_pred HHHHHHHhh---------cCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChH----HHHHHH---HH-h---c
Q 037592 188 IGVLSACSH---------MGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE----EAETLI---EN-A---D 247 (337)
Q Consensus 188 ~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----~A~~~~---~~-~---~ 247 (337)
..+...|-. ....++|+..|.+.- .+.|+...--.++..+...|... +..++- .. + +
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg 297 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKG 297 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhc
Confidence 877666532 123677777777654 34455433333333344444321 222222 11 1 1
Q ss_pred ---CCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCC
Q 037592 248 ---CRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPD 284 (337)
Q Consensus 248 ---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 284 (337)
...+--.+.+++.++.-.|++++|.+.++++....|+
T Consensus 298 ~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 298 SLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred cccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 1223334567788888899999999999999988776
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00067 Score=57.88 Aligned_cols=116 Identities=12% Similarity=0.104 Sum_probs=78.1
Q ss_pred CCCCchHhHHHHHHHHHhcCChHHHHHHHHHccc-C-----ChhhHHHHHHHHHcCCChhHHHHHHHHHhh----cCccc
Q 037592 16 GLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLK-K-----NSVSSSALLQGYCQTGDFESVIRIFREMEE----IDLFS 85 (337)
Q Consensus 16 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~ 85 (337)
+.+.+......+++.+....+++.+..++-+... | -..+.+++++.|...|..++++.+++.=.. ||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 3455666667777777777777777777666522 1 233456777777788877777777776655 77778
Q ss_pred HHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhc
Q 037592 86 FGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKC 131 (337)
Q Consensus 86 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 131 (337)
++.|+..+.+.|++..|.++...|...+...+..++..-+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888877777777777766655555555444444444
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0048 Score=51.35 Aligned_cols=252 Identities=14% Similarity=0.030 Sum_probs=129.3
Q ss_pred HHHHhcCChHHHHHHHHHccc--C-ChhhHHHHHHHHHcCCChhHHHHHHHHHhh--c-CcccHHHHHHHHHhhchhhhh
Q 037592 29 DMYGKCGLVDESHRVFDKMLK--K-NSVSSSALLQGYCQTGDFESVIRIFREMEE--I-DLFSFGIVLRACAGLAALRLG 102 (337)
Q Consensus 29 ~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a 102 (337)
..+.+..++..|+..+...++ | +..-|..-+..+..-|++++|.--.++-.+ + ......-.-.++...++..+|
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A 136 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEA 136 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHH
Confidence 344455566666666655522 2 344455556666666777777666655554 1 111222233333333333333
Q ss_pred HHHHH---------------HHHHhhC-CCCchhHHHH-HHHHHhcCCHHHHHHHHhcCCCCcHH-hHHHHH--HHHHhC
Q 037592 103 KEVHC---------------QYIRRSG-CKDVIIESAL-VDLYAKCGCVDFAHQIFLQMPVRNLI-TWNSMI--SGFAQN 162 (337)
Q Consensus 103 ~~~~~---------------~~~~~~~-~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~l~--~~~~~~ 162 (337)
.+.++ ....... +|....+..+ ..++.-.|++++|.+.--...+.|.. .+...+ .++.-.
T Consensus 137 ~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~ 216 (486)
T KOG0550|consen 137 EEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYN 216 (486)
T ss_pred HHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccc
Confidence 33222 1111111 1222222222 24556677777777765555533322 222222 334456
Q ss_pred CCHhHHHHHHHHHHhcCCCCCHhHHHH-------------HHHHHhhcCchhhHHHHHHHHHHhc--CCCCCHHHHHHHH
Q 037592 163 GRGEEALRIFDDMTEGGTKPDHVSFIG-------------VLSACSHMGLIDRGRKHFASMTKEY--RIKPKIEHYNCMV 227 (337)
Q Consensus 163 ~~~~~a~~~~~~m~~~~~~p~~~~~~~-------------l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~l~ 227 (337)
++.+.|...|++.+.. .|+...-.. =.+-..+.|++..|.+.|.+.+.-. ...|+...|....
T Consensus 217 ~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra 294 (486)
T KOG0550|consen 217 DNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRA 294 (486)
T ss_pred cchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhH
Confidence 7777888888777663 344332111 1122345677888888887776210 1223345566666
Q ss_pred HHHHhcCChHHHHHHHHHh-cCCCchhHHHHHH--HHHhcCCChhHHHHHHHHHHhcCC
Q 037592 228 DLLGRAGLLEEAETLIENA-DCRHDSSLWEVLL--GACTTFRNAHVAERVAKKIMELKP 283 (337)
Q Consensus 228 ~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~--~~~~~~g~~~~a~~~~~~~~~~~p 283 (337)
.+..+.|+.++|+.--+.. .+. .......+. .++...+++++|.+-++++.+...
T Consensus 295 ~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 295 LVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred hhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 6677778888887776653 332 222222232 446667778888888877776443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00072 Score=47.01 Aligned_cols=86 Identities=13% Similarity=-0.021 Sum_probs=41.5
Q ss_pred HHHHHhhchhhhhHHHHHHHHHhhCCCC--chhHHHHHHHHHhcCCHHHHHHHHhcCC--CCc----HHhHHHHHHHHHh
Q 037592 90 LRACAGLAALRLGKEVHCQYIRRSGCKD--VIIESALVDLYAKCGCVDFAHQIFLQMP--VRN----LITWNSMISGFAQ 161 (337)
Q Consensus 90 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~----~~~~~~l~~~~~~ 161 (337)
..++-..|+.++|+.+|++.+..|.... ...+..+...+...|++++|..+|++.. .|+ ......+..++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 3344445555555555555555554322 2334445555555566666665555544 122 1112222334455
Q ss_pred CCCHhHHHHHHHHH
Q 037592 162 NGRGEEALRIFDDM 175 (337)
Q Consensus 162 ~~~~~~a~~~~~~m 175 (337)
.|+.++|+..+-..
T Consensus 88 ~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 88 LGRPKEALEWLLEA 101 (120)
T ss_pred CCCHHHHHHHHHHH
Confidence 56666665555444
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0091 Score=46.77 Aligned_cols=226 Identities=10% Similarity=-0.038 Sum_probs=123.3
Q ss_pred hhHHHHHHHHHcCCChhHHHHHHHHHhh---cCcccHHHHHHHH-Hhhch-hhhhHHHHH-HHHHhhCCCCchhHHHHHH
Q 037592 53 VSSSALLQGYCQTGDFESVIRIFREMEE---IDLFSFGIVLRAC-AGLAA-LRLGKEVHC-QYIRRSGCKDVIIESALVD 126 (337)
Q Consensus 53 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~-~~~~~-~~~a~~~~~-~~~~~~~~~~~~~~~~l~~ 126 (337)
..|+.-+.++.+.+..++|..-++...+ ||.. |...-..| .+.|. +.-+.+++- ++...- |+ -++.|.+
T Consensus 70 q~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~-Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~l--gn--pqesLdR 144 (366)
T KOG2796|consen 70 QLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLY-YEYYPHVYPGRRGSMVPFSMRILHAELQQYL--GN--PQESLDR 144 (366)
T ss_pred HHHHHHHHHHHHHhhhHHHHhhhhhhccCCCccee-eeeccccCCCCcCccccHHHHHHHHHHHHhc--CC--cHHHHHH
Confidence 3466667777777778777776666655 2221 00000000 01111 122222222 222211 11 2455555
Q ss_pred HHHhcCCHHHHHHHHhcCCCC----------cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhh
Q 037592 127 LYAKCGCVDFAHQIFLQMPVR----------NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSH 196 (337)
Q Consensus 127 ~~~~~g~~~~A~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 196 (337)
.+.-..-+++-+..++.-..| -....+.++..+.-.|.+.-....+.+..+...+.+......+...-.+
T Consensus 145 l~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ 224 (366)
T KOG2796|consen 145 LHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQ 224 (366)
T ss_pred HHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHh
Confidence 555444445545444443322 2234455666666777777777788777776555566667777777777
Q ss_pred cCchhhHHHHHHHHHHhcCCCCCHHHHH-----HHHHHHHhcCChHHHHHHHHHhc--CCCchhHHHHHHHHHhcCCChh
Q 037592 197 MGLIDRGRKHFASMTKEYRIKPKIEHYN-----CMVDLLGRAGLLEEAETLIENAD--CRHDSSLWEVLLGACTTFRNAH 269 (337)
Q Consensus 197 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~ 269 (337)
.|+.+.|...|+...+.. -..+..+.+ .....|.-++++..|...+.++. ...++...|.-.-+..-.|+..
T Consensus 225 ~GD~k~a~~yf~~vek~~-~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~ 303 (366)
T KOG2796|consen 225 IGDIKTAEKYFQDVEKVT-QKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLK 303 (366)
T ss_pred cccHHHHHHHHHHHHHHH-hhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHH
Confidence 888888888888664332 223322222 23334555677777777777653 2223444444444444567778
Q ss_pred HHHHHHHHHHhcCCC
Q 037592 270 VAERVAKKIMELKPD 284 (337)
Q Consensus 270 ~a~~~~~~~~~~~p~ 284 (337)
.|++..+.+.+..|.
T Consensus 304 DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 304 DALKQLEAMVQQDPR 318 (366)
T ss_pred HHHHHHHHHhccCCc
Confidence 888888888877777
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.028 Score=47.63 Aligned_cols=69 Identities=14% Similarity=0.175 Sum_probs=55.3
Q ss_pred HHHhcCCC----chhHHHHHHHH--HhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHH
Q 037592 243 IENADCRH----DSSLWEVLLGA--CTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLM 312 (337)
Q Consensus 243 ~~~~~~~~----~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 312 (337)
.++.|+.| +...-|.+..+ +..+|++.++.-.-.-..++.|+ +.+|..++-+.....++++|..++..+
T Consensus 447 i~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaPS-~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 447 ITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAPS-PQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 34445554 33445666655 67899999999888888889996 999999999999999999999999874
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0012 Score=44.47 Aligned_cols=86 Identities=13% Similarity=0.099 Sum_probs=62.5
Q ss_pred HHHHHHHhhchhhhhHHHHHHHHHhhC-CCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHh
Q 037592 88 IVLRACAGLAALRLGKEVHCQYIRRSG-CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGE 166 (337)
Q Consensus 88 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 166 (337)
..+..|...+++...-.+|+.+++.|+ .|+..+|+.++...++..--. ..-.++.-
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~-----------------------~~ie~kl~ 86 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDS-----------------------EDIENKLT 86 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccc-----------------------hhHHHHHH
Confidence 345556666888888888888888888 788888888887655432111 01113455
Q ss_pred HHHHHHHHHHhcCCCCCHhHHHHHHHHHhh
Q 037592 167 EALRIFDDMTEGGTKPDHVSFIGVLSACSH 196 (337)
Q Consensus 167 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 196 (337)
+.+.+|+.|...+++|+..+|+.++..+.+
T Consensus 87 ~LLtvYqDiL~~~lKP~~etYnivl~~Llk 116 (120)
T PF08579_consen 87 NLLTVYQDILSNKLKPNDETYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence 677899999999999999999999987654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.029 Score=49.67 Aligned_cols=269 Identities=15% Similarity=0.110 Sum_probs=133.9
Q ss_pred CCchHhHHHHHHHHHhcCChHHHHHHHHHcccCChhhHHHHHHHHHcCCChhHHHHHHHHHhhcCcccHHHHHHHHHhhc
Q 037592 18 CGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLA 97 (337)
Q Consensus 18 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~ 97 (337)
.|....+.+-+..|...|.+++|..+--- --....|.-|.......=+++-|.+.|.+.+. .
T Consensus 553 ~~~evp~~~~m~q~Ieag~f~ea~~iacl--gVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRd----------------l 614 (1081)
T KOG1538|consen 553 SAVEVPQSAPMYQYIERGLFKEAYQIACL--GVTDTDWRELAMEALEALDFETARKAYIRVRD----------------L 614 (1081)
T ss_pred ecccccccccchhhhhccchhhhhccccc--ceecchHHHHHHHHHhhhhhHHHHHHHHHHhc----------------c
Confidence 34444555556667777877777654211 11222344454444444445555554444322 1
Q ss_pred hhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCc--HHhHHH-----HHHHHHhCCCHhHHHH
Q 037592 98 ALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRN--LITWNS-----MISGFAQNGRGEEALR 170 (337)
Q Consensus 98 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~-----l~~~~~~~~~~~~a~~ 170 (337)
.+-+...-++++.+.|-.|+... +...++-.|++.+|-++|.+--..+ ...|+- ..+-|...|..++-..
T Consensus 615 ~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKm 691 (1081)
T KOG1538|consen 615 RYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKM 691 (1081)
T ss_pred HHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHH
Confidence 11222333445555555555432 3344555566666666666554221 111211 2334444555444444
Q ss_pred HHHHHHh--cCCCCCHhHHHHHHHHHhhcCchhhHHHHHHH-----HHHhcCC---CCCHHHHHHHHHHHHhcCChHHHH
Q 037592 171 IFDDMTE--GGTKPDHVSFIGVLSACSHMGLIDRGRKHFAS-----MTKEYRI---KPKIEHYNCMVDLLGRAGLLEEAE 240 (337)
Q Consensus 171 ~~~~m~~--~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~-----~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~ 240 (337)
+.++-.+ .+++.. .+....+...|+.++|..+.-+ ++-+-+- ..+..+...+..-+.+...+..|-
T Consensus 692 L~RKRA~WAr~~keP----kaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAa 767 (1081)
T KOG1538|consen 692 LIRKRADWARNIKEP----KAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAA 767 (1081)
T ss_pred HHHHHHHHhhhcCCc----HHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHH
Confidence 4332111 011100 1122333344555544433211 1111011 223345555555556667777888
Q ss_pred HHHHHhcCCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccch----------HHHHHHHHHHcCChhhHHHHHH
Q 037592 241 TLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLS----------YVLLDNVYRAVGRWNDAFKIRT 310 (337)
Q Consensus 241 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~----------~~~l~~~~~~~g~~~~A~~~~~ 310 (337)
++|.+++.. ..++......+++++|..+.++.-+..|+.... |...-.+|.++|+-.+|.++++
T Consensus 768 eIF~k~gD~------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLe 841 (1081)
T KOG1538|consen 768 EIFLKMGDL------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLE 841 (1081)
T ss_pred HHHHHhccH------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHH
Confidence 888887632 335566777888888888877776665553222 3334457788888888888888
Q ss_pred HHHHhCC
Q 037592 311 LMKYSGV 317 (337)
Q Consensus 311 ~m~~~~~ 317 (337)
++-...+
T Consensus 842 QLtnnav 848 (1081)
T KOG1538|consen 842 QLTNNAV 848 (1081)
T ss_pred Hhhhhhh
Confidence 8755443
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0021 Score=51.61 Aligned_cols=84 Identities=11% Similarity=-0.060 Sum_probs=37.9
Q ss_pred HhcCChHHHHHHHHHh-cCCCch----hHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCc---cchHHHHHHHHHHcCCh
Q 037592 231 GRAGLLEEAETLIENA-DCRHDS----SLWEVLLGACTTFRNAHVAERVAKKIMELKPDC---HLSYVLLDNVYRAVGRW 302 (337)
Q Consensus 231 ~~~g~~~~A~~~~~~~-~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~ 302 (337)
.+.|++++|...|+.+ ...|+. ..+..+..+|...|++++|...|+.+.+..|++ +.++..++.++...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 3345555555555442 122221 233334444555555555555555555444442 22333334444455555
Q ss_pred hhHHHHHHHHHH
Q 037592 303 NDAFKIRTLMKY 314 (337)
Q Consensus 303 ~~A~~~~~~m~~ 314 (337)
++|..+|+++.+
T Consensus 234 ~~A~~~~~~vi~ 245 (263)
T PRK10803 234 AKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHHHH
Confidence 555555555444
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0012 Score=50.12 Aligned_cols=96 Identities=17% Similarity=0.250 Sum_probs=70.8
Q ss_pred HHHhcC--CCCcHHhHHHHHHHHHh-----CCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhc--------------
Q 037592 139 QIFLQM--PVRNLITWNSMISGFAQ-----NGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHM-------------- 197 (337)
Q Consensus 139 ~~~~~~--~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-------------- 197 (337)
..|++. ...+..+|..++..|.+ .|..+=....++.|.+.|+.-|..+|+.|++.+=+.
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h 114 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH 114 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence 444444 35567777777777764 466777777888888888888888999888877542
Q ss_pred --CchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 037592 198 --GLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235 (337)
Q Consensus 198 --~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 235 (337)
.+-+-|+++++.| +.+|+-||..++..+++.+.+.+.
T Consensus 115 yp~Qq~c~i~lL~qM-E~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 115 YPRQQECAIDLLEQM-ENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred CcHHHHHHHHHHHHH-HHcCCCCcHHHHHHHHHHhccccH
Confidence 2346688888888 777888888888888888876654
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.01 Score=46.54 Aligned_cols=161 Identities=12% Similarity=0.092 Sum_probs=118.8
Q ss_pred HHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 037592 155 MISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234 (337)
Q Consensus 155 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 234 (337)
.+..+......+..++.|++=.. ...++++..+...|.+.-....+.+.++. .-+.++.....|+..-.+.|
T Consensus 155 ii~~~e~~~~~ESsv~lW~KRl~-------~Vmy~~~~~llG~kEy~iS~d~~~~vi~~-~~e~~p~L~s~Lgr~~MQ~G 226 (366)
T KOG2796|consen 155 ILANLEQGLAEESSIRLWRKRLG-------RVMYSMANCLLGMKEYVLSVDAYHSVIKY-YPEQEPQLLSGLGRISMQIG 226 (366)
T ss_pred HHHHHHhccchhhHHHHHHHHHH-------HHHHHHHHHHhcchhhhhhHHHHHHHHHh-CCcccHHHHHHHHHHHHhcc
Confidence 34444444455777777776432 34566777777888888889999998654 44667888889999999999
Q ss_pred ChHHHHHHHHHh---cCCCchhHHHHHH-----HHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHH
Q 037592 235 LLEEAETLIENA---DCRHDSSLWEVLL-----GACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAF 306 (337)
Q Consensus 235 ~~~~A~~~~~~~---~~~~~~~~~~~l~-----~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 306 (337)
+.+.|...|+.. ..+.+..+.+.++ ..|.-.+++..|...+.++...+|.++..-+.-.-+..-.|+..+|+
T Consensus 227 D~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAi 306 (366)
T KOG2796|consen 227 DIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDAL 306 (366)
T ss_pred cHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHH
Confidence 999999999843 1223333344333 34677888999999999999999998888887777777789999999
Q ss_pred HHHHHHHHhCCccCCCC
Q 037592 307 KIRTLMKYSGVKKMPGK 323 (337)
Q Consensus 307 ~~~~~m~~~~~~~~~~~ 323 (337)
+.++.|.+.-..|....
T Consensus 307 K~~e~~~~~~P~~~l~e 323 (366)
T KOG2796|consen 307 KQLEAMVQQDPRHYLHE 323 (366)
T ss_pred HHHHHHhccCCccchhh
Confidence 99999998766654443
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00044 Score=50.52 Aligned_cols=69 Identities=23% Similarity=0.269 Sum_probs=54.0
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHH-----HhCCccCCC
Q 037592 254 LWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMK-----YSGVKKMPG 322 (337)
Q Consensus 254 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~~~~~~~~ 322 (337)
....++..+...|+++.|..+++.+...+|-+...|..++.+|...|+..+|.++|+++. +.|+.|.+.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 355566778899999999999999999999999999999999999999999999998875 357777554
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.059 Score=48.29 Aligned_cols=56 Identities=14% Similarity=0.215 Sum_probs=34.4
Q ss_pred CCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHH
Q 037592 114 GCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDD 174 (337)
Q Consensus 114 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 174 (337)
.+.+....-.+.+++.+.|..++|.+.+-+...|.. .+..|...++|.+|.++-++
T Consensus 848 Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pka-----Av~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 848 LPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPKA-----AVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred cCcccchHHHHHHHHHhhchHHHHHHHHHhccCcHH-----HHHHHHHHHHHHHHHHHHHh
Confidence 334566667777788888888888777766665532 22344555556555555443
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00057 Score=57.90 Aligned_cols=99 Identities=8% Similarity=-0.041 Sum_probs=70.8
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHH-hcCCCchh----HHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHH
Q 037592 218 PKIEHYNCMVDLLGRAGLLEEAETLIEN-ADCRHDSS----LWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLL 292 (337)
Q Consensus 218 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 292 (337)
.+...++.+..+|...|++++|+..|++ +...|+.. +|..+..+|...|+.++|+..++++++..+. .|..+
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~---~f~~i 149 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL---KFSTI 149 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch---hHHHH
Confidence 3577888899999999999999999987 56667643 4888888899999999999999999886322 23221
Q ss_pred HH--HHHHcCChhhHHHHHHHHHHhCCcc
Q 037592 293 DN--VYRAVGRWNDAFKIRTLMKYSGVKK 319 (337)
Q Consensus 293 ~~--~~~~~g~~~~A~~~~~~m~~~~~~~ 319 (337)
.. .+....+..+..++++...+.|...
T Consensus 150 ~~DpdL~plR~~pef~eLlee~rk~G~~~ 178 (453)
T PLN03098 150 LNDPDLAPFRASPEFKELQEEARKGGEDI 178 (453)
T ss_pred HhCcchhhhcccHHHHHHHHHHHHhCCcc
Confidence 11 1223334557777888888777653
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.51 E-value=8.4e-05 Score=38.72 Aligned_cols=33 Identities=33% Similarity=0.531 Sum_probs=30.5
Q ss_pred HHHHHhcCCCccchHHHHHHHHHHcCChhhHHH
Q 037592 275 AKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFK 307 (337)
Q Consensus 275 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 307 (337)
|+++++++|+++.+|..++.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 678899999999999999999999999999863
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.037 Score=49.07 Aligned_cols=95 Identities=14% Similarity=0.065 Sum_probs=57.5
Q ss_pred HHHHhcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCC
Q 037592 138 HQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIK 217 (337)
Q Consensus 138 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 217 (337)
.++-+++...+..+...+..-+.+...+.-|-++|..|-. ...++..+...++|++|..+-+... .+.
T Consensus 736 idI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hP---e~~ 803 (1081)
T KOG1538|consen 736 IDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHP---EFK 803 (1081)
T ss_pred HHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCc---ccc
Confidence 3333344444555666666666677778888888887743 2346777888899999988877663 334
Q ss_pred CCHHHHHHHHH-------------HHHhcCChHHHHHHHHHh
Q 037592 218 PKIEHYNCMVD-------------LLGRAGLLEEAETLIENA 246 (337)
Q Consensus 218 ~~~~~~~~l~~-------------~~~~~g~~~~A~~~~~~~ 246 (337)
|++ |....+ +|.++|+-.+|.++++++
T Consensus 804 ~dV--y~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQL 843 (1081)
T KOG1538|consen 804 DDV--YMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQL 843 (1081)
T ss_pred ccc--cchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHh
Confidence 542 222233 445555555555555544
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00024 Score=39.64 Aligned_cols=41 Identities=24% Similarity=0.399 Sum_probs=35.4
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHH
Q 037592 254 LWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDN 294 (337)
Q Consensus 254 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 294 (337)
+|..+...|...|++++|+++|+++++..|+++..+..++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 57778888999999999999999999999999888877654
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00045 Score=44.22 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=11.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHc
Q 037592 23 VESSLVDMYGKCGLVDESHRVFDKM 47 (337)
Q Consensus 23 ~~~~l~~~~~~~~~~~~A~~~~~~~ 47 (337)
+|+.+...|...|++++|++.|++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~a 31 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKA 31 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444444444444444444443
|
... |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.018 Score=46.21 Aligned_cols=110 Identities=13% Similarity=0.003 Sum_probs=78.0
Q ss_pred CCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc---CChHHHHHHHHHh-cCCC-chhHHH
Q 037592 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRA---GLLEEAETLIENA-DCRH-DSSLWE 256 (337)
Q Consensus 182 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~-~~~~-~~~~~~ 256 (337)
-|...|..|...|...|+.+.|..-|....+-. ++++..+..+..++... ....++.++|++. ...| ++.+..
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~--g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLA--GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 367788888889999999999999998886544 44555666666655543 2466788888874 4444 444555
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHH
Q 037592 257 VLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDN 294 (337)
Q Consensus 257 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 294 (337)
.|...+...|++.+|...|+.|.+..|.+ ..+..+++
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~-~~rr~~ie 268 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPAD-DPRRSLIE 268 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCC-CchHHHHH
Confidence 55577889999999999999999876663 44555444
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00032 Score=44.96 Aligned_cols=60 Identities=15% Similarity=0.161 Sum_probs=32.7
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHh----cCCC---ccchHHHHHHHHHHcCChhhHHHHHHHHH
Q 037592 254 LWEVLLGACTTFRNAHVAERVAKKIME----LKPD---CHLSYVLLDNVYRAVGRWNDAFKIRTLMK 313 (337)
Q Consensus 254 ~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 313 (337)
+++.+...|...|++++|+..|+++++ ..++ ...++..++.++...|++++|++.+++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344555555666666666666665554 1111 13355566666666666666666666544
|
... |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.096 Score=47.31 Aligned_cols=117 Identities=15% Similarity=0.143 Sum_probs=88.7
Q ss_pred CCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhcCCCchhHHHHH
Q 037592 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVL 258 (337)
Q Consensus 179 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l 258 (337)
|..-...+.+--+.-+...|+..+|.++-.+. + -||...|.-=+.+++..+++++-+++-+.... +.-|.-+
T Consensus 679 ~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~F-k----ipdKr~~wLk~~aLa~~~kweeLekfAkskks---PIGy~PF 750 (829)
T KOG2280|consen 679 GGSFVDLSLHDTVTTLILIGQNKRAEQLKSDF-K----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS---PIGYLPF 750 (829)
T ss_pred ccccccCcHHHHHHHHHHccchHHHHHHHHhc-C----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC---CCCchhH
Confidence 33344455566666777889999998887666 2 58888888888999999999998888776642 4557888
Q ss_pred HHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHH
Q 037592 259 LGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTL 311 (337)
Q Consensus 259 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (337)
+.+|.+.|+.++|.+++-+... +...+.+|.+.|++.+|.++--+
T Consensus 751 Ve~c~~~~n~~EA~KYiprv~~--------l~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 751 VEACLKQGNKDEAKKYIPRVGG--------LQEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHHHhcccHHHHhhhhhccCC--------hHHHHHHHHHhccHHHHHHHHHH
Confidence 9999999999999988765422 22577899999999998876443
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0046 Score=43.46 Aligned_cols=83 Identities=12% Similarity=0.113 Sum_probs=55.9
Q ss_pred HHhHHHHHHHHHhCCCHhHHHHHHHHHHh---------------cCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHh
Q 037592 149 LITWNSMISGFAQNGRGEEALRIFDDMTE---------------GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKE 213 (337)
Q Consensus 149 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~---------------~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 213 (337)
..++.+++.++++.|+.+....+++..-. ....|+..+..+++.+|+..|++..|.++.+...+.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 34556666666666666666666654422 123467777777777777778888888888877777
Q ss_pred cCCCCCHHHHHHHHHHHH
Q 037592 214 YRIKPKIEHYNCMVDLLG 231 (337)
Q Consensus 214 ~~~~~~~~~~~~l~~~~~ 231 (337)
++++.+..+|..|++-..
T Consensus 82 Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred cCCCCCHHHHHHHHHHHH
Confidence 777777777777776443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0045 Score=45.16 Aligned_cols=53 Identities=19% Similarity=0.330 Sum_probs=25.1
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHHHHHHH
Q 037592 123 ALVDLYAKCGCVDFAHQIFLQMP---VRNLITWNSMISGFAQNGRGEEALRIFDDM 175 (337)
Q Consensus 123 ~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 175 (337)
.++..+...|++++|..+.+++. +-+...|..+|.+|...|+..+|.+.|+++
T Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 67 RLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 34444445555555555555444 223445555555555555555555555544
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.12 Score=46.81 Aligned_cols=293 Identities=15% Similarity=0.094 Sum_probs=168.6
Q ss_pred HHHhcCCCCchHhHHHH-----HHHHHhcCChHHHHHHHHHcccCC---hhhHHHHHHHHHcCCC--hhHHHHHH-HHHh
Q 037592 11 KVITLGLCGNVVVESSL-----VDMYGKCGLVDESHRVFDKMLKKN---SVSSSALLQGYCQTGD--FESVIRIF-REME 79 (337)
Q Consensus 11 ~~~~~~~~~~~~~~~~l-----~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~--~~~A~~~~-~~~~ 79 (337)
.+.+.|++.+..-|..| ++-+...+.+..|+++-..+..|- ...|.....-+++..+ -+++++-. +++.
T Consensus 422 r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls 501 (829)
T KOG2280|consen 422 RDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLS 501 (829)
T ss_pred cccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhc
Confidence 34566777777666544 566777899999999988885553 3455555666665532 22333333 3333
Q ss_pred h--cCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCC----CCchhHHHHHHHHHhcCCHHHHHHHHhcCCC-------
Q 037592 80 E--IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC----KDVIIESALVDLYAKCGCVDFAHQIFLQMPV------- 146 (337)
Q Consensus 80 ~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------- 146 (337)
. .+...|..+.+.....|+.+.|..+++.=...+.. .+..-+..-+.-....|+.+-...++-.+..
T Consensus 502 ~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l 581 (829)
T KOG2280|consen 502 AKLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSL 581 (829)
T ss_pred ccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH
Confidence 3 44567888888888888888888776432211110 0112223334445556666655555544431
Q ss_pred -------C-cHHhHHHHHH--------HHHhCCCHhHHHHHHH--HHH----hcCCCCCHhHHHHHHHHHhhcCc-----
Q 037592 147 -------R-NLITWNSMIS--------GFAQNGRGEEALRIFD--DMT----EGGTKPDHVSFIGVLSACSHMGL----- 199 (337)
Q Consensus 147 -------~-~~~~~~~l~~--------~~~~~~~~~~a~~~~~--~m~----~~~~~p~~~~~~~l~~~~~~~~~----- 199 (337)
| ....|.-++. .+...++..++..-|. ... ..|..|+. ......+.+...
T Consensus 582 ~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~l---k~~a~~~a~sk~~s~e~ 658 (829)
T KOG2280|consen 582 FMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPAL---KTAANAFAKSKEKSFEA 658 (829)
T ss_pred HHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhH---HHHHHHHhhhhhhhhHH
Confidence 1 1112222221 1111222222222111 100 01222332 223344443332
Q ss_pred -----hhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhcCCCchhHHHHHHHHHhcCCChhHHHHH
Q 037592 200 -----IDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERV 274 (337)
Q Consensus 200 -----~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 274 (337)
..+-+++.+.+..+.+......+.+--+.-+...|+..+|.++-.+..+ ||-..|-.-+.+++..+++++.+++
T Consensus 659 ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fki-pdKr~~wLk~~aLa~~~kweeLekf 737 (829)
T KOG2280|consen 659 KALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKI-PDKRLWWLKLTALADIKKWEELEKF 737 (829)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCC-cchhhHHHHHHHHHhhhhHHHHHHH
Confidence 1122333344434445444455566667778889999999999999875 4777788888999999999988877
Q ss_pred HHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHH
Q 037592 275 AKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLM 312 (337)
Q Consensus 275 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 312 (337)
.+..+. |..|.-.+.+|.+.|+.++|.+++-+.
T Consensus 738 Akskks-----PIGy~PFVe~c~~~~n~~EA~KYiprv 770 (829)
T KOG2280|consen 738 AKSKKS-----PIGYLPFVEACLKQGNKDEAKKYIPRV 770 (829)
T ss_pred HhccCC-----CCCchhHHHHHHhcccHHHHhhhhhcc
Confidence 654332 678999999999999999999998654
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.12 Score=46.55 Aligned_cols=127 Identities=11% Similarity=0.027 Sum_probs=63.6
Q ss_pred hHHHHHHHHHcccCChhhHHHHHHHHHcCCChhHHHHHHHHHhh-cCcccHHHH----------HHHHHhhchhhhhHHH
Q 037592 37 VDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEE-IDLFSFGIV----------LRACAGLAALRLGKEV 105 (337)
Q Consensus 37 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l----------~~~~~~~~~~~~a~~~ 105 (337)
+++|.+..++ .|.+..|..+.......-.++-|...|-+... +.......| ...-.--|.+++|+++
T Consensus 679 ledA~qfiEd--nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~ 756 (1189)
T KOG2041|consen 679 LEDAIQFIED--NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKL 756 (1189)
T ss_pred hHHHHHHHhc--CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhh
Confidence 3444444433 34455666666655555555555555554433 222111111 1111223566667666
Q ss_pred HHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCC-----cHHhHHHHHHHHHhCCCHhHHHHHHHH
Q 037592 106 HCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVR-----NLITWNSMISGFAQNGRGEEALRIFDD 174 (337)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~ 174 (337)
|-.+-++. .-+..+.+.|+|-.+.++++.-... -..+|+.+...+.....|++|.++|..
T Consensus 757 yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 757 YLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred hhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 65544332 2455666777777777776654311 123556666655555556555555543
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0075 Score=50.21 Aligned_cols=96 Identities=10% Similarity=0.010 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHh-c-CCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHH
Q 037592 220 IEHYNCMVDLLGRAGLLEEAETLIENA-D-CRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297 (337)
Q Consensus 220 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 297 (337)
..++..+..+|.+.+++.+|++.-++. . .++|+...-.=..++...|+++.|+..|++++++.|+|..+-..|+.+-.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 346778888999999999999988863 3 34567777777789999999999999999999999999888888877776
Q ss_pred HcCChhhH-HHHHHHHHHh
Q 037592 298 AVGRWNDA-FKIRTLMKYS 315 (337)
Q Consensus 298 ~~g~~~~A-~~~~~~m~~~ 315 (337)
+.....+. .++|..|...
T Consensus 337 k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 66655554 6788888754
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.056 Score=44.58 Aligned_cols=214 Identities=16% Similarity=0.093 Sum_probs=116.2
Q ss_pred HhcCChHHHHHHHHHcccC------ChhhHHHHHHHHHcCCChhHHHHHHHHHhh-----cC----cccHHHHHHHHHhh
Q 037592 32 GKCGLVDESHRVFDKMLKK------NSVSSSALLQGYCQTGDFESVIRIFREMEE-----ID----LFSFGIVLRACAGL 96 (337)
Q Consensus 32 ~~~~~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~ 96 (337)
...++.++|+..+.+...+ ...++..+..+.+++|++++++..--.-.. .| ..+|..+.+++.+.
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l 96 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKL 96 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777666665333 123455666677777777766554322221 11 23455566666666
Q ss_pred chhhhhHHHHHHHHHhh-CCC---CchhHHHHHHHHHhcCCHHHHHHHHhcCC-------CC--cHHhHHHHHHHHHhCC
Q 037592 97 AALRLGKEVHCQYIRRS-GCK---DVIIESALVDLYAKCGCVDFAHQIFLQMP-------VR--NLITWNSMISGFAQNG 163 (337)
Q Consensus 97 ~~~~~a~~~~~~~~~~~-~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~--~~~~~~~l~~~~~~~~ 163 (337)
-++.+++.+-+.-.... ..| .-...-++..++.-.+.++++++.|+... .| ....+-.|.+.|.+..
T Consensus 97 ~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~ 176 (518)
T KOG1941|consen 97 CEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK 176 (518)
T ss_pred HHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH
Confidence 66666666655444321 111 12333445666666677777777776654 11 2346777777777777
Q ss_pred CHhHHHHHHHHHHhc----CCCCCHhHHH-----HHHHHHhhcCchhhHHHHHHHHHHhc---CCCC-CHHHHHHHHHHH
Q 037592 164 RGEEALRIFDDMTEG----GTKPDHVSFI-----GVLSACSHMGLIDRGRKHFASMTKEY---RIKP-KIEHYNCMVDLL 230 (337)
Q Consensus 164 ~~~~a~~~~~~m~~~----~~~p~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~-~~~~~~~l~~~~ 230 (337)
++++|.-+..+..+. ++..-..-|. .+.-++...|.+..|.+.-++..+-. |-.+ .......+.+.|
T Consensus 177 D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIy 256 (518)
T KOG1941|consen 177 DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIY 256 (518)
T ss_pred hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 887777666554332 2221111222 23345556677666666666553321 2111 133345566777
Q ss_pred HhcCChHHHHHHHHH
Q 037592 231 GRAGLLEEAETLIEN 245 (337)
Q Consensus 231 ~~~g~~~~A~~~~~~ 245 (337)
...|+.+.|..-|+.
T Consensus 257 R~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 257 RSRGDLERAFRRYEQ 271 (518)
T ss_pred HhcccHhHHHHHHHH
Confidence 777777777766664
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0055 Score=46.68 Aligned_cols=104 Identities=15% Similarity=0.102 Sum_probs=74.5
Q ss_pred cCcccHHHHHHHHHh-----hchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHH
Q 037592 81 IDLFSFGIVLRACAG-----LAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSM 155 (337)
Q Consensus 81 ~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 155 (337)
.|-.+|..++..+.+ .|..+-....+..|.+.|+..|..+|+.|++++=+ |.+- | ...+.++
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-----------p-~n~fQ~~ 111 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-----------P-RNFFQAE 111 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-----------c-ccHHHHH
Confidence 455566666666643 47778888888899999999999999999887654 3332 1 1111111
Q ss_pred HHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCc
Q 037592 156 ISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGL 199 (337)
Q Consensus 156 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 199 (337)
-. .--.+-+-|++++++|...|+-||..++..+++.+++.+.
T Consensus 112 F~--hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 112 FM--HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred hc--cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 11 1234567889999999999999999999999999977664
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0024 Score=40.17 Aligned_cols=60 Identities=22% Similarity=0.201 Sum_probs=37.6
Q ss_pred HHHHhcCChHHHHHHHHHh-cCCC-chhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccc
Q 037592 228 DLLGRAGLLEEAETLIENA-DCRH-DSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHL 287 (337)
Q Consensus 228 ~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 287 (337)
..|.+.+++++|.++++.+ ...| ++..|.....++.+.|++++|...++++.+..|+++.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~ 64 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPD 64 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHH
Confidence 4566667777777777653 2323 3444555556677777777777777777777776543
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.012 Score=48.21 Aligned_cols=219 Identities=12% Similarity=0.004 Sum_probs=101.0
Q ss_pred HHcCCChhHHHHHHHHHhh------cCcccHHHHHHHHHhhchhhhhHHHHHHHHHhh--CCCC---chhHHHHHHHHHh
Q 037592 62 YCQTGDFESVIRIFREMEE------IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRS--GCKD---VIIESALVDLYAK 130 (337)
Q Consensus 62 ~~~~g~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~---~~~~~~l~~~~~~ 130 (337)
+..+.+.++|+..+.+... -...++..+..+.+..|.++++...----+..- ...+ ...|..+..++.+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777776655 112345556666666666665554321111110 0011 2233334444444
Q ss_pred cCCHHHHHHHHhcCC-CC-------cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCC-----CCHhHHHHHHHHHhhc
Q 037592 131 CGCVDFAHQIFLQMP-VR-------NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK-----PDHVSFIGVLSACSHM 197 (337)
Q Consensus 131 ~g~~~~A~~~~~~~~-~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-----p~~~~~~~l~~~~~~~ 197 (337)
.-++.+++.+-..-. -| ......++..++...+.++++++.|+...+.-.. .....+..+-..|...
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 444444444332221 01 1122333455555666666666666665442111 1223455555556666
Q ss_pred CchhhHHHHHHHHH---HhcCCCCCHHHH-----HHHHHHHHhcCChHHHHHHHHH-------hcCCCc-hhHHHHHHHH
Q 037592 198 GLIDRGRKHFASMT---KEYRIKPKIEHY-----NCMVDLLGRAGLLEEAETLIEN-------ADCRHD-SSLWEVLLGA 261 (337)
Q Consensus 198 ~~~~~a~~~~~~~~---~~~~~~~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~-------~~~~~~-~~~~~~l~~~ 261 (337)
.++++|.-+...+. ...++..-..-| ..|.-++...|++-.|.+.-++ +|.++. ......+...
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 66666665554432 222222111122 2233344555665555555443 232221 1223334455
Q ss_pred HhcCCChhHHHHHHHHHHh
Q 037592 262 CTTFRNAHVAERVAKKIME 280 (337)
Q Consensus 262 ~~~~g~~~~a~~~~~~~~~ 280 (337)
|...|+.+.|..-|+.+..
T Consensus 256 yR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHhcccHhHHHHHHHHHHH
Confidence 6666666666666655544
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.12 Score=44.12 Aligned_cols=63 Identities=14% Similarity=0.190 Sum_probs=48.9
Q ss_pred CCchHhHHHHHHHHHhcCChHHHHHHHHHcccCC---hhhHHHHHHHHHcCCChhHHHHHHHHHhh
Q 037592 18 CGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKN---SVSSSALLQGYCQTGDFESVIRIFREMEE 80 (337)
Q Consensus 18 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 80 (337)
+-|+.+|-.|+..|...|.+++..++++++..|- ..+|..-+++-....++..+..+|.+...
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~ 104 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLK 104 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHh
Confidence 6688899999999999999999999999997763 44566666666666666666666666543
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.058 Score=41.96 Aligned_cols=25 Identities=8% Similarity=0.081 Sum_probs=12.7
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHh
Q 037592 55 SSALLQGYCQTGDFESVIRIFREME 79 (337)
Q Consensus 55 ~~~l~~~~~~~g~~~~A~~~~~~~~ 79 (337)
|.-...+|-...++++|...+.+..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~ 58 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKAS 58 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHH
Confidence 4444445555555555555555444
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0061 Score=50.73 Aligned_cols=133 Identities=13% Similarity=0.027 Sum_probs=70.3
Q ss_pred HHHHHcCCChhHHHHHHHHHhh--cCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHH
Q 037592 59 LQGYCQTGDFESVIRIFREMEE--IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDF 136 (337)
Q Consensus 59 ~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 136 (337)
...|.+.|++..|..-|+++.. ..... -+.++..... ..-..++..|..+|.+.+++..
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~-----------~~~ee~~~~~--------~~k~~~~lNlA~c~lKl~~~~~ 275 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRS-----------FDEEEQKKAE--------ALKLACHLNLAACYLKLKEYKE 275 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhcccc-----------CCHHHHHHHH--------HHHHHHhhHHHHHHHhhhhHHH
Confidence 4467788888888888888665 11100 0001111000 0123345556666667777776
Q ss_pred HHHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHh-hcCc-hhhHHHHHHHHH
Q 037592 137 AHQIFLQMP---VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS-HMGL-IDRGRKHFASMT 211 (337)
Q Consensus 137 A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~-~~~~-~~~a~~~~~~~~ 211 (337)
|+...++.. ++|+-...--..+|...|+++.|+..|+++++ +.|+......=+..|. +... .+...++|..|.
T Consensus 276 Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 276 AIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666665554 34555555556666677777777777777766 4454444433332332 2222 233355666665
Q ss_pred H
Q 037592 212 K 212 (337)
Q Consensus 212 ~ 212 (337)
.
T Consensus 354 ~ 354 (397)
T KOG0543|consen 354 A 354 (397)
T ss_pred h
Confidence 4
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0082 Score=51.14 Aligned_cols=61 Identities=10% Similarity=0.020 Sum_probs=51.4
Q ss_pred CHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHh
Q 037592 183 DHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKI----EHYNCMVDLLGRAGLLEEAETLIENA 246 (337)
Q Consensus 183 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~ 246 (337)
+...++.+..+|.+.|++++|+..|++.++. .|+. .+|..+..+|...|+.++|+..+++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL---~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL---NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4567888888999999999999999998743 5663 35889999999999999999999874
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.11 Score=40.92 Aligned_cols=171 Identities=16% Similarity=0.111 Sum_probs=92.7
Q ss_pred HHHHHhcCCHHHHHHHHhcCCC--C----cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhc-
Q 037592 125 VDLYAKCGCVDFAHQIFLQMPV--R----NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHM- 197 (337)
Q Consensus 125 ~~~~~~~g~~~~A~~~~~~~~~--~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~- 197 (337)
+..-.+.|++++|.+.|+.+.. | ...+.-.++.++.+.+++++|+..+++....-+.-....|...|.+++.-
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~ 120 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFF 120 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhc
Confidence 3344566777777777777662 1 23345555666677777777777777766542222222333333333311
Q ss_pred ------Cc---hhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhcCCCchhH-HH-HHHHHHhcCC
Q 037592 198 ------GL---IDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSL-WE-VLLGACTTFR 266 (337)
Q Consensus 198 ------~~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~-~l~~~~~~~g 266 (337)
.+ ...|..-|+.++.+. ||. .=...|...+..+. |... ++ .+..-|.+.|
T Consensus 121 ~i~~~~rDq~~~~~A~~~f~~~i~ry---PnS-------------~Ya~dA~~~i~~~~---d~LA~~Em~IaryY~kr~ 181 (254)
T COG4105 121 QIDDVTRDQSAARAAFAAFKELVQRY---PNS-------------RYAPDAKARIVKLN---DALAGHEMAIARYYLKRG 181 (254)
T ss_pred cCCccccCHHHHHHHHHHHHHHHHHC---CCC-------------cchhhHHHHHHHHH---HHHHHHHHHHHHHHHHhc
Confidence 11 122333333333321 221 11111111111111 1111 12 2335688999
Q ss_pred ChhHHHHHHHHHHhcCCCcc---chHHHHHHHHHHcCChhhHHHHHHHHHH
Q 037592 267 NAHVAERVAKKIMELKPDCH---LSYVLLDNVYRAVGRWNDAFKIRTLMKY 314 (337)
Q Consensus 267 ~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 314 (337)
.+..|..-++++++.-|+.+ ..+..+..+|...|-.++|...-.-+..
T Consensus 182 ~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 182 AYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred ChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 99999999999998766644 4566778899999999998887654443
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.013 Score=42.81 Aligned_cols=83 Identities=7% Similarity=-0.138 Sum_probs=40.5
Q ss_pred HhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHH
Q 037592 94 AGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP---VRNLITWNSMISGFAQNGRGEEALR 170 (337)
Q Consensus 94 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~ 170 (337)
...|++++|..+|+-+...++ -+..-+..|..++-..+++++|+..|.... ..|+..+.....+|...|+.++|..
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHH
Confidence 344555555555544444433 334444445555555555555555554322 2333444445555555555555555
Q ss_pred HHHHHHh
Q 037592 171 IFDDMTE 177 (337)
Q Consensus 171 ~~~~m~~ 177 (337)
.|....+
T Consensus 127 ~f~~a~~ 133 (165)
T PRK15331 127 CFELVNE 133 (165)
T ss_pred HHHHHHh
Confidence 5555544
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.042 Score=39.17 Aligned_cols=62 Identities=19% Similarity=0.049 Sum_probs=36.7
Q ss_pred HHHHHHhcCChHHHHHHHHHhcCC-C----chhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccc
Q 037592 226 MVDLLGRAGLLEEAETLIENADCR-H----DSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHL 287 (337)
Q Consensus 226 l~~~~~~~g~~~~A~~~~~~~~~~-~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 287 (337)
-.....+.|++++|.+.|+.+..+ | ....--.++.+|.+.++++.|...+++.+++.|.++.
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 344455666777777777665211 1 1223344556677777777777777777777766543
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.1 Score=39.97 Aligned_cols=182 Identities=15% Similarity=0.122 Sum_probs=104.0
Q ss_pred hcCCHHHHHHHHhcCC--CCc-HHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHH
Q 037592 130 KCGCVDFAHQIFLQMP--VRN-LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKH 206 (337)
Q Consensus 130 ~~g~~~~A~~~~~~~~--~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 206 (337)
..|-+.-|+.-|.+.. .|+ +..||.|.--+...|+++.|.+.|+...+....-+-...|.-| ++--.|++.-|.+-
T Consensus 77 SlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d 155 (297)
T COG4785 77 SLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDD 155 (297)
T ss_pred hhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHH
Confidence 3444555555555444 343 5678888888888999999999999888854443333333333 23345788888776
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhcCCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCc-
Q 037592 207 FASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDC- 285 (337)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~- 285 (337)
+....+...-.|-...|.-+.. ..-++.+|..-+.+--...+..-|...|-.+.- |+. ....++++++....++
T Consensus 156 ~~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yL-gki-S~e~l~~~~~a~a~~n~ 230 (297)
T COG4785 156 LLAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYL-GKI-SEETLMERLKADATDNT 230 (297)
T ss_pred HHHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHH-hhc-cHHHHHHHHHhhccchH
Confidence 6666554333333344433322 233566776655442223344445554433221 111 1123344444433232
Q ss_pred ------cchHHHHHHHHHHcCChhhHHHHHHHHHHhCC
Q 037592 286 ------HLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGV 317 (337)
Q Consensus 286 ------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 317 (337)
..+|..|+.-+...|+.++|..+|+-....++
T Consensus 231 ~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 231 SLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 45788888889999999999998887665544
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.19 Score=42.67 Aligned_cols=259 Identities=11% Similarity=0.045 Sum_probs=128.4
Q ss_pred HHHHHhcCChHHHHHHHHHcccCC--hhhHHHHHHHHHcCCChhHHHHHHHHHhh--------cCcccHHHHHHHHHhhc
Q 037592 28 VDMYGKCGLVDESHRVFDKMLKKN--SVSSSALLQGYCQTGDFESVIRIFREMEE--------IDLFSFGIVLRACAGLA 97 (337)
Q Consensus 28 ~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~~ 97 (337)
..+.-+.|+|+...+........+ ...+.++... +.|+++++..+++++.. .....|........+..
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~~~~~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~lq 82 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQSNEDSPEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVKLQ 82 (352)
T ss_pred HHHHHhcCChhhHHHHHhhccCCChhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence 456667788888666666654432 3333333332 77888888888877766 11222222222222222
Q ss_pred hhhhhHHHHHHHHHh-------------------hCCCCchhHHHHHHHHHhcCCHHHHHHHHh--cCCCCcHHhHHHHH
Q 037592 98 ALRLGKEVHCQYIRR-------------------SGCKDVIIESALVDLYAKCGCVDFAHQIFL--QMPVRNLITWNSMI 156 (337)
Q Consensus 98 ~~~~a~~~~~~~~~~-------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~--~~~~~~~~~~~~l~ 156 (337)
.+.+..++.+-.... +..++..++..++..-. .++. .+......+|..++
T Consensus 83 ~L~Elee~~~~~~~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~---------~~l~~~~~~~~~~~~~l~~a 153 (352)
T PF02259_consen 83 QLVELEEIIELKSNLSQNPQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRR---------LVLSLILLPEELAETWLKFA 153 (352)
T ss_pred HHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH---------HHHhcccchhHHHHHHHHHH
Confidence 222222222211110 11233333333332110 0111 11123456788888
Q ss_pred HHHHhCCCHhHHHHHHHHHHhcCCCC---CHhHHHHHHHHHhhcCchhhHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHh
Q 037592 157 SGFAQNGRGEEALRIFDDMTEGGTKP---DHVSFIGVLSACSHMGLIDRGRKHFASMTKE-YRIKPKIEHYNCMVDLLGR 232 (337)
Q Consensus 157 ~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~ 232 (337)
..+.+.|.++-|...+.++...+..+ .......-+...-..|+..+|+..++..+.. .....+......+...+..
T Consensus 154 ~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (352)
T PF02259_consen 154 KLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLE 233 (352)
T ss_pred HHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhcccc
Confidence 89999999999999998887753222 2233344455666778889999888887652 1111111111111111100
Q ss_pred cCChHHHHHH-HHHhcCCCchhHHHHHHHHHh------cCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHc
Q 037592 233 AGLLEEAETL-IENADCRHDSSLWEVLLGACT------TFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAV 299 (337)
Q Consensus 233 ~g~~~~A~~~-~~~~~~~~~~~~~~~l~~~~~------~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 299 (337)
..+..... ........-...+..+..-+. ..+..+.+...|+++.+..|.....|..++..+.+.
T Consensus 234 --~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 234 --SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKL 305 (352)
T ss_pred --ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHH
Confidence 00000000 000000000112222222222 347889999999999999998888888777766543
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.07 Score=37.24 Aligned_cols=140 Identities=11% Similarity=0.107 Sum_probs=86.7
Q ss_pred HHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHH
Q 037592 159 FAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238 (337)
Q Consensus 159 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 238 (337)
..-.|..++..++..+.... .+..-++.++.-....-+-+-..++++.+ |--.| ...+|++..
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsI----GkiFD----------is~C~NlKr 74 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSI----GKIFD----------ISKCGNLKR 74 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHH----GGGS-----------GGG-S-THH
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHH----hhhcC----------chhhcchHH
Confidence 34467777888887777653 24445555655444444455555555555 32233 123556666
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHhcCCChhHHHHHHHHHHh-cCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCC
Q 037592 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME-LKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGV 317 (337)
Q Consensus 239 A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 317 (337)
....+-.++. +.......+......|+-+...++++++.. -.|+ +.....+..+|.+.|+..++.+++.+.-+.|+
T Consensus 75 Vi~C~~~~n~--~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~-p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 75 VIECYAKRNK--LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEIN-PEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhcc--hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCC-HHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 6655555542 344566777888999999999999999875 3444 88899999999999999999999999999998
Q ss_pred c
Q 037592 318 K 318 (337)
Q Consensus 318 ~ 318 (337)
+
T Consensus 152 k 152 (161)
T PF09205_consen 152 K 152 (161)
T ss_dssp H
T ss_pred H
Confidence 6
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.2 Score=42.24 Aligned_cols=167 Identities=7% Similarity=-0.011 Sum_probs=104.3
Q ss_pred HhHHHHHHHHHhCCCHhHHHHHHHHHHhcC---CCCCHhHHHHHHHHHhh---cCchhhHHHHHHHHHHhcCCCCCHHHH
Q 037592 150 ITWNSMISGFAQNGRGEEALRIFDDMTEGG---TKPDHVSFIGVLSACSH---MGLIDRGRKHFASMTKEYRIKPKIEHY 223 (337)
Q Consensus 150 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~---~~p~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~ 223 (337)
.+...++-+|....+++..+++++.+...- +.-....-...+-++.+ .|+.++|.+++..++.. .-.+++.++
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-~~~~~~d~~ 220 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-DENPDPDTL 220 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-cCCCChHHH
Confidence 344456667999999999999999997641 11111122233445556 89999999999996454 456788888
Q ss_pred HHHHHHHHh---------cCChHHHHHHHHH-hcCCCchhHHHHHHHHHhcCCC----hhHHHHHHHHH---H-h---cC
Q 037592 224 NCMVDLLGR---------AGLLEEAETLIEN-ADCRHDSSLWEVLLGACTTFRN----AHVAERVAKKI---M-E---LK 282 (337)
Q Consensus 224 ~~l~~~~~~---------~g~~~~A~~~~~~-~~~~~~~~~~~~l~~~~~~~g~----~~~a~~~~~~~---~-~---~~ 282 (337)
..++..|.. ....++|...|.+ ....|+..+--.++..+.-.|. ..+..++-.+. . + ..
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~ 300 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLE 300 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccc
Confidence 888877743 2247788888886 3455554432222222222222 22233332111 1 1 12
Q ss_pred CC-ccchHHHHHHHHHHcCChhhHHHHHHHHHHhCC
Q 037592 283 PD-CHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGV 317 (337)
Q Consensus 283 p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 317 (337)
+. +--.+.+++++..-.|+.++|.+.+++|.....
T Consensus 301 ~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~ 336 (374)
T PF13281_consen 301 KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKP 336 (374)
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Confidence 22 123456788999999999999999999987643
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.047 Score=42.44 Aligned_cols=86 Identities=15% Similarity=0.093 Sum_probs=38.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCC--------CCcH-HhHHHHHHHHHhCCCHhHHHHHHHHHHhcC---CCCCHhHHH
Q 037592 121 ESALVDLYAKCGCVDFAHQIFLQMP--------VRNL-ITWNSMISGFAQNGRGEEALRIFDDMTEGG---TKPDHVSFI 188 (337)
Q Consensus 121 ~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~---~~p~~~~~~ 188 (337)
+......+.+..++++|-..|.+-. -++. ..|-..|-.|.-..++..|...++.--+.+ -+-+..+..
T Consensus 153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~le 232 (308)
T KOG1585|consen 153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLE 232 (308)
T ss_pred HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHH
Confidence 3344445555555555444443332 1111 223444444445556666666665533321 112334555
Q ss_pred HHHHHHhhcCchhhHHHHH
Q 037592 189 GVLSACSHMGLIDRGRKHF 207 (337)
Q Consensus 189 ~l~~~~~~~~~~~~a~~~~ 207 (337)
.|+.+| ..|+.+++.+++
T Consensus 233 nLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 233 NLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHh-ccCCHHHHHHHH
Confidence 555544 345555554443
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.18 Score=41.24 Aligned_cols=49 Identities=10% Similarity=0.155 Sum_probs=26.8
Q ss_pred HhcCChHHHHHHHHHccc----CChh-------hHHHHHHHHHcCC-ChhHHHHHHHHHhh
Q 037592 32 GKCGLVDESHRVFDKMLK----KNSV-------SSSALLQGYCQTG-DFESVIRIFREMEE 80 (337)
Q Consensus 32 ~~~~~~~~A~~~~~~~~~----~~~~-------~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 80 (337)
.+.|+++.|...+.++.. .++. .+...+......+ +++.|...+++..+
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~ 64 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYD 64 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 467888888888877621 1111 1222223333444 77777777766543
|
It is also involved in sporulation []. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.087 Score=45.95 Aligned_cols=163 Identities=18% Similarity=0.159 Sum_probs=97.4
Q ss_pred HHHHcCCChhHHHHHHH--HHhh-cCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHH
Q 037592 60 QGYCQTGDFESVIRIFR--EMEE-IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDF 136 (337)
Q Consensus 60 ~~~~~~g~~~~A~~~~~--~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 136 (337)
....-.|+++++.++.+ ++.. ........++.-+.+.|..+.|+++- .|+. .-.+...+.|+++.
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~---------~D~~---~rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFV---------TDPD---HRFELALQLGNLDI 336 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHS---------S-HH---HHHHHHHHCT-HHH
T ss_pred HHHHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhc---------CChH---HHhHHHHhcCCHHH
Confidence 34455667777666654 2221 11333566666667777777776653 3332 23455678888988
Q ss_pred HHHHHhcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCC
Q 037592 137 AHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRI 216 (337)
Q Consensus 137 A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 216 (337)
|.++.++.. +...|..|.....+.|+++-|.+.|.+... +..++-.|.-.|+.+.-.++.+....+ |
T Consensus 337 A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~-~- 403 (443)
T PF04053_consen 337 ALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER-G- 403 (443)
T ss_dssp HHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT-T-
T ss_pred HHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc-c-
Confidence 888877666 566899999998999999999988887643 445555666778877777777666332 2
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHhcCCCch
Q 037592 217 KPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDS 252 (337)
Q Consensus 217 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 252 (337)
-++....++.-.|+.++..+++.+.+..|-+
T Consensus 404 -----~~n~af~~~~~lgd~~~cv~lL~~~~~~~~A 434 (443)
T PF04053_consen 404 -----DINIAFQAALLLGDVEECVDLLIETGRLPEA 434 (443)
T ss_dssp ------HHHHHHHHHHHT-HHHHHHHHHHTT-HHHH
T ss_pred -----CHHHHHHHHHHcCCHHHHHHHHHHcCCchHH
Confidence 2444555666678888888888877654433
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.19 Score=40.46 Aligned_cols=144 Identities=13% Similarity=0.146 Sum_probs=95.0
Q ss_pred HHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCC--c--HHhHHHHHHHHHhCCCHh
Q 037592 91 RACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVR--N--LITWNSMISGFAQNGRGE 166 (337)
Q Consensus 91 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~--~~~~~~l~~~~~~~~~~~ 166 (337)
......+++..|...+........ .+...--.++.+|...|+.+.|..++..+... + ......-|..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~-~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAP-ENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCc-ccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 345677888999999998888765 44566677889999999999999999988732 1 122223344455555555
Q ss_pred HHHHHHHHHHhcCCCC-CHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHH
Q 037592 167 EALRIFDDMTEGGTKP-DHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238 (337)
Q Consensus 167 ~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 238 (337)
+...+-++.-. .| |...-..+...+...|+.+.|.+.+-.++++..-.-|...-..|+..+.--|..+.
T Consensus 221 ~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 221 EIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADP 290 (304)
T ss_pred CHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCH
Confidence 55555554443 34 55555566777888888888888777776654444555666666666665554333
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.022 Score=45.08 Aligned_cols=57 Identities=11% Similarity=0.014 Sum_probs=26.6
Q ss_pred HHHHHhcCCChhHHHHHHHHHHhcCCCc---cchHHHHHHHHHHcCChhhHHHHHHHHHH
Q 037592 258 LLGACTTFRNAHVAERVAKKIMELKPDC---HLSYVLLDNVYRAVGRWNDAFKIRTLMKY 314 (337)
Q Consensus 258 l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 314 (337)
|..++...|+++.|...|..+.+-.|++ +.++..|+.+..+.|+.++|..+|+++.+
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4444444555555555554444433322 23344444445555555555555554443
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.11 Score=45.94 Aligned_cols=150 Identities=15% Similarity=0.093 Sum_probs=84.4
Q ss_pred HHHHHHcCCChhHHHHHHHHHhh-cCcc---------cHHHHHHHHHh----hchhhhhHHHHHHHHHhhCCCCchhHHH
Q 037592 58 LLQGYCQTGDFESVIRIFREMEE-IDLF---------SFGIVLRACAG----LAALRLGKEVHCQYIRRSGCKDVIIESA 123 (337)
Q Consensus 58 l~~~~~~~g~~~~A~~~~~~~~~-~~~~---------~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 123 (337)
++....=.|+-+.+++.+.+..+ .+.. .|+..+..++. ..+.+.+.+++..+.+.- |+...|..
T Consensus 194 ll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y--P~s~lfl~ 271 (468)
T PF10300_consen 194 LLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY--PNSALFLF 271 (468)
T ss_pred HHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC--CCcHHHHH
Confidence 44444556777777777777665 2221 23333333332 345566777777777653 45444432
Q ss_pred -HHHHHHhcCCHHHHHHHHhcCCCC-------cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHH-HHH
Q 037592 124 -LVDLYAKCGCVDFAHQIFLQMPVR-------NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVL-SAC 194 (337)
Q Consensus 124 -l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~-~~~ 194 (337)
-.+.+...|+.++|++.|++.... ....+.-++-.+.-..+|++|.+.|.++.+..- -+..+|.-+. .++
T Consensus 272 ~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~-WSka~Y~Y~~a~c~ 350 (468)
T PF10300_consen 272 FEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK-WSKAFYAYLAAACL 350 (468)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc-cHHHHHHHHHHHHH
Confidence 345666778888888888765521 122334445556667778888888877776421 1223333332 233
Q ss_pred hhcCch-------hhHHHHHHHH
Q 037592 195 SHMGLI-------DRGRKHFASM 210 (337)
Q Consensus 195 ~~~~~~-------~~a~~~~~~~ 210 (337)
...|+. ++|..++.++
T Consensus 351 ~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 351 LMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HhhccchhhhhhHHHHHHHHHHH
Confidence 355666 6666666665
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.03 Score=44.33 Aligned_cols=95 Identities=19% Similarity=0.190 Sum_probs=55.3
Q ss_pred hHHHHHHHHHhCCCHhHHHHHHHHHHhcCCC--CCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCC-HHHHHHHH
Q 037592 151 TWNSMISGFAQNGRGEEALRIFDDMTEGGTK--PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPK-IEHYNCMV 227 (337)
Q Consensus 151 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~ 227 (337)
.|+.-+.. .+.|++..|...|...++.... -....+-.|..++...|++++|..+|..+.++++-.|. +..+..|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 35544443 3456677777777776665321 12234445666666777777777777766665443333 35556666
Q ss_pred HHHHhcCChHHHHHHHHHh
Q 037592 228 DLLGRAGLLEEAETLIENA 246 (337)
Q Consensus 228 ~~~~~~g~~~~A~~~~~~~ 246 (337)
.+..+.|+.++|...|+++
T Consensus 223 ~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 223 VSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHhcCHHHHHHHHHHH
Confidence 6666666666666666654
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.27 Score=41.21 Aligned_cols=256 Identities=14% Similarity=0.072 Sum_probs=167.4
Q ss_pred CCchHhHHHHHHHH--HhcCChHHHHHHHHHcccCChhh----HHHHHHHHHcCCChhHHHHHHHHHhh--cC-cccHHH
Q 037592 18 CGNVVVESSLVDMY--GKCGLVDESHRVFDKMLKKNSVS----SSALLQGYCQTGDFESVIRIFREMEE--ID-LFSFGI 88 (337)
Q Consensus 18 ~~~~~~~~~l~~~~--~~~~~~~~A~~~~~~~~~~~~~~----~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~ 88 (337)
..|....-.|+.+- .-.|+++.|.+-|+.|... +.+ ...|.-...+.|..+.|.++-+..-. |. ...+..
T Consensus 115 ssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~A 193 (531)
T COG3898 115 SSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARA 193 (531)
T ss_pred hccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHH
Confidence 34555455555443 3469999999999999652 222 33444445678999999999988877 44 346788
Q ss_pred HHHHHHhhchhhhhHHHHHHHHHhhC-CCCch--hHHHHHHHHHh---cCCHHHHHHHHhcCC--CCcHH-hHHHHHHHH
Q 037592 89 VLRACAGLAALRLGKEVHCQYIRRSG-CKDVI--IESALVDLYAK---CGCVDFAHQIFLQMP--VRNLI-TWNSMISGF 159 (337)
Q Consensus 89 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~--~~~~l~~~~~~---~g~~~~A~~~~~~~~--~~~~~-~~~~l~~~~ 159 (337)
.+...+..|+++.|+++.+.-+...+ .++.. .-..|+.+-.. ..+...|...-.+.. .||.. .-..-..++
T Consensus 194 tLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAral 273 (531)
T COG3898 194 TLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARAL 273 (531)
T ss_pred HHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHH
Confidence 89999999999999999987766543 22221 11222222111 123444554444433 45543 333445788
Q ss_pred HhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCChHH
Q 037592 160 AQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPK-IEHYNCMVDLLGRAGLLEE 238 (337)
Q Consensus 160 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~ 238 (337)
.+.|+..++-.+++.+.+....|+.. .+..+.+.|+ .+..-+++..+-...+|| ......+..+-...|++..
T Consensus 274 f~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ 347 (531)
T COG3898 274 FRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSA 347 (531)
T ss_pred HhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHH
Confidence 99999999999999999975555432 2233455564 334344444222244555 4556667788888999998
Q ss_pred HHHHHHHh-cCCCchhHHHHHHHH-HhcCCChhHHHHHHHHHHh
Q 037592 239 AETLIENA-DCRHDSSLWEVLLGA-CTTFRNAHVAERVAKKIME 280 (337)
Q Consensus 239 A~~~~~~~-~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~ 280 (337)
|..--+.. ...|....|-.|... -...|+-.++..++-+...
T Consensus 348 ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 348 ARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 88777653 466777778777766 4566999999999988876
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.19 Score=39.28 Aligned_cols=218 Identities=16% Similarity=0.069 Sum_probs=121.4
Q ss_pred CCChhHHHHHHHHHhh--cC---cccHHHHHHHHHhhchhhhhHHHHHHHHHh-hCCCCchhHHHHHHHHHhcCCHHHHH
Q 037592 65 TGDFESVIRIFREMEE--ID---LFSFGIVLRACAGLAALRLGKEVHCQYIRR-SGCKDVIIESALVDLYAKCGCVDFAH 138 (337)
Q Consensus 65 ~g~~~~A~~~~~~~~~--~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~ 138 (337)
.+....+...+..... +. ...+......+...+.+..+...+...... ........+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 3455555555555555 22 345555666666777777777776666552 22244555556666666677777777
Q ss_pred HHHhcCCC--CcH-HhHHHHHH-HHHhCCCHhHHHHHHHHHHhcCC--CCCHhHHHHHHHHHhhcCchhhHHHHHHHHHH
Q 037592 139 QIFLQMPV--RNL-ITWNSMIS-GFAQNGRGEEALRIFDDMTEGGT--KPDHVSFIGVLSACSHMGLIDRGRKHFASMTK 212 (337)
Q Consensus 139 ~~~~~~~~--~~~-~~~~~l~~-~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 212 (337)
..+..... ++. ........ .+...|+++.|...+.+...... ......+......+...++.+.+...+.....
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 77766653 221 22222333 56677777777777777644211 01222233333334556677777777777653
Q ss_pred hcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHh-cCCCc-hhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCC
Q 037592 213 EYRIKP-KIEHYNCMVDLLGRAGLLEEAETLIENA-DCRHD-SSLWEVLLGACTTFRNAHVAERVAKKIMELKPD 284 (337)
Q Consensus 213 ~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 284 (337)
. .+. ....+..+...+...++++.|...+... ...|+ ...+......+...+..+.+...+.+.....|.
T Consensus 196 ~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 196 L--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred h--CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 2 122 3455666666666677777777776653 23333 233333333333555677777777777666665
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.019 Score=39.81 Aligned_cols=84 Identities=13% Similarity=0.027 Sum_probs=50.4
Q ss_pred HHHhcCChHHHHHHHHHcc---cCChhhHHHHHHHHHcCCChhHHHHHHHHHhh---cCc----ccHHHHHHHHHhhchh
Q 037592 30 MYGKCGLVDESHRVFDKML---KKNSVSSSALLQGYCQTGDFESVIRIFREMEE---IDL----FSFGIVLRACAGLAAL 99 (337)
Q Consensus 30 ~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~----~~~~~l~~~~~~~~~~ 99 (337)
+++..|+++.|++.|.+.+ ..+...||.-..++.-+|+.++|++-+++..+ +.. .+|..-...|...|+.
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 4556677777777776652 23566677777777777777777777777666 111 1233344445555666
Q ss_pred hhhHHHHHHHHHhh
Q 037592 100 RLGKEVHCQYIRRS 113 (337)
Q Consensus 100 ~~a~~~~~~~~~~~ 113 (337)
+.|..-|+..-+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 66666665555554
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.41 Score=42.39 Aligned_cols=161 Identities=15% Similarity=0.055 Sum_probs=108.4
Q ss_pred HHHHHHHHHhCCCHhHHHHHHHHHHhcC-CCCCH-----hHHHHHHHHHhh----cCchhhHHHHHHHHHHhcCCCCCHH
Q 037592 152 WNSMISGFAQNGRGEEALRIFDDMTEGG-TKPDH-----VSFIGVLSACSH----MGLIDRGRKHFASMTKEYRIKPKIE 221 (337)
Q Consensus 152 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~-----~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 221 (337)
...+++...-.|+-+.+++.+.+..+.+ +.-.. ..|..++..++. ....+.|.+++..+.++ -|+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcH
Confidence 3445566667899999999998876642 22111 234444433333 45678899999999654 46655
Q ss_pred HHH-HHHHHHHhcCChHHHHHHHHHhcC-CC-----chhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHH-
Q 037592 222 HYN-CMVDLLGRAGLLEEAETLIENADC-RH-----DSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLD- 293 (337)
Q Consensus 222 ~~~-~l~~~~~~~g~~~~A~~~~~~~~~-~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~- 293 (337)
.|. .-...+...|++++|.+.|++... +. ....+--+.-.+.-..++++|...|..+.+...-+...|..+.
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a 347 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 554 335667789999999999996421 11 1222334445677889999999999999997666555555554
Q ss_pred HHHHHcCCh-------hhHHHHHHHHHHh
Q 037592 294 NVYRAVGRW-------NDAFKIRTLMKYS 315 (337)
Q Consensus 294 ~~~~~~g~~-------~~A~~~~~~m~~~ 315 (337)
.++...|+. ++|.++|.+....
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 455677888 8899999887654
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.26 Score=38.44 Aligned_cols=216 Identities=17% Similarity=0.078 Sum_probs=108.9
Q ss_pred chhhhhHHHHHHHHHhhCCC-CchhHHHHHHHHHhcCCHHHHHHHHhcCC-----CCcHHhHHHHHHHHHhCCCHhHHHH
Q 037592 97 AALRLGKEVHCQYIRRSGCK-DVIIESALVDLYAKCGCVDFAHQIFLQMP-----VRNLITWNSMISGFAQNGRGEEALR 170 (337)
Q Consensus 97 ~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~ 170 (337)
+....+...+.......... ....+......+...+.+..+...+.... ......+......+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 33444444444444432211 23445555566666666666666555543 2233445555555556666666666
Q ss_pred HHHHHHhcCCCCCHhHHHHHHH-HHhhcCchhhHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHh-
Q 037592 171 IFDDMTEGGTKPDHVSFIGVLS-ACSHMGLIDRGRKHFASMTKEYRI--KPKIEHYNCMVDLLGRAGLLEEAETLIENA- 246 (337)
Q Consensus 171 ~~~~m~~~~~~p~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 246 (337)
.+.........+. ........ .+...|+++.|...+..... ... ......+......+...++.+.+...+.+.
T Consensus 117 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 117 LLEKALALDPDPD-LAEALLALGALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHcCCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 6666655322221 11111222 45566666666666666632 111 112333333344455566666666666653
Q ss_pred cCCCc--hhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHH
Q 037592 247 DCRHD--SSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKY 314 (337)
Q Consensus 247 ~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 314 (337)
...++ ...+..+...+...++++.+...+.......|.....+..+...+...+..+++...+.+...
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 195 KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred hhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22222 344555555566666666666666666666665334444444444455556666666555544
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.058 Score=37.95 Aligned_cols=93 Identities=12% Similarity=-0.002 Sum_probs=50.0
Q ss_pred HhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhcCCCchhHHHHHHHHHh
Q 037592 184 HVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACT 263 (337)
Q Consensus 184 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~ 263 (337)
..++..++.++++.|+.+....+++..- |+..+...- .+. +-..-+..|+..+..+++.+|+
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~W---gI~~~~~~~---------~~~------~~~~spl~Pt~~lL~AIv~sf~ 63 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVW---GIDVNGKKK---------EGD------YPPSSPLYPTSRLLIAIVHSFG 63 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhc---CCCCCCccc---------cCc------cCCCCCCCCCHHHHHHHHHHHH
Confidence 4456666666666666666666665432 333221000 000 0011124466777777777777
Q ss_pred cCCChhHHHHHHHHHHhcC--CCccchHHHHHH
Q 037592 264 TFRNAHVAERVAKKIMELK--PDCHLSYVLLDN 294 (337)
Q Consensus 264 ~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~ 294 (337)
..|++..|.++.+...+.. |-...+|..|+.
T Consensus 64 ~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 64 YNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred hcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 7777777777777776632 222456666655
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.14 Score=44.03 Aligned_cols=64 Identities=11% Similarity=-0.083 Sum_probs=37.9
Q ss_pred chhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHH
Q 037592 251 DSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKY 314 (337)
Q Consensus 251 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 314 (337)
|+.....+..+..-.++++.|..+|+++..++|+...+|...+....-.|+.++|.+.+++..+
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 3444444444444555566666666666666666666666666666666666666666665443
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.83 Score=42.26 Aligned_cols=174 Identities=9% Similarity=0.042 Sum_probs=120.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHcccCChhh----HHHHHHHHHcCCChhHHHHHHHHHhhcCcccHHHHHHHHHhhchhh
Q 037592 25 SSLVDMYGKCGLVDESHRVFDKMLKKNSVS----SSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALR 100 (337)
Q Consensus 25 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 100 (337)
..-+..+.+..-++-|+.+-+.-.. +... .....+-+.+.|++++|...|-+... ..--..++.-|.......
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~--~le~s~Vi~kfLdaq~Ik 414 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIG--FLEPSEVIKKFLDAQRIK 414 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcc--cCChHHHHHHhcCHHHHH
Confidence 4456677777778888887766422 2222 33344556788999999998887655 111234667777788888
Q ss_pred hhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcH-HhHHHHHHHHHhCCCHhHHHHHHHHHHhcC
Q 037592 101 LGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNL-ITWNSMISGFAQNGRGEEALRIFDDMTEGG 179 (337)
Q Consensus 101 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 179 (337)
.-..+++.+.+.|. .+...-..|+.+|.+.++.++-.++.+....... .-....+..+.+.+-.++|..+-.+...
T Consensus 415 nLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~-- 491 (933)
T KOG2114|consen 415 NLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKK-- 491 (933)
T ss_pred HHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhcc--
Confidence 88889999999998 6777778899999999999999998887762211 1244566777777777888776655432
Q ss_pred CCCCHhHHHHHHHHHhhcCchhhHHHHHHHH
Q 037592 180 TKPDHVSFIGVLSACSHMGLIDRGRKHFASM 210 (337)
Q Consensus 180 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 210 (337)
.......++ -..+++++|.+++..+
T Consensus 492 ---he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 492 ---HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred ---CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 223333333 4568899999988766
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.42 Score=38.56 Aligned_cols=171 Identities=9% Similarity=0.010 Sum_probs=90.5
Q ss_pred HHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHh
Q 037592 134 VDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKE 213 (337)
Q Consensus 134 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 213 (337)
-+...+++++...+....-..-.......|++.+|..+|+........ +......++.++...|+.+.|..++..+..+
T Consensus 119 esqlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~ 197 (304)
T COG3118 119 ESQLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQ 197 (304)
T ss_pred HHHHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCccc
Confidence 344555555555442222222334455677777777777777665322 3344455667777777777777777765321
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhcCCC-chhHHHHHHHHHhcCCChhHHHHHHHHHHh--cCCCccchHH
Q 037592 214 YRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRH-DSSLWEVLLGACTTFRNAHVAERVAKKIME--LKPDCHLSYV 290 (337)
Q Consensus 214 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~p~~~~~~~ 290 (337)
. -.........-+..+.+.....+...+-.+....| |...-..+...+...|+.+.|.+.+-.+.+ ..-.+...-.
T Consensus 198 ~-~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk 276 (304)
T COG3118 198 A-QDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARK 276 (304)
T ss_pred c-hhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHH
Confidence 1 01111111223344444445444444545544444 444444555667777777777766655555 2233345566
Q ss_pred HHHHHHHHcCChhhHH
Q 037592 291 LLDNVYRAVGRWNDAF 306 (337)
Q Consensus 291 ~l~~~~~~~g~~~~A~ 306 (337)
.|+..+.-.|.-+.+.
T Consensus 277 ~lle~f~~~g~~Dp~~ 292 (304)
T COG3118 277 TLLELFEAFGPADPLV 292 (304)
T ss_pred HHHHHHHhcCCCCHHH
Confidence 6666666666444433
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.0096 Score=30.79 Aligned_cols=31 Identities=23% Similarity=0.222 Sum_probs=21.1
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHhcCCC
Q 037592 254 LWEVLLGACTTFRNAHVAERVAKKIMELKPD 284 (337)
Q Consensus 254 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 284 (337)
+|..+..+|...|++++|+..|+++++++|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4666666777777777777777777777765
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.075 Score=42.32 Aligned_cols=97 Identities=18% Similarity=0.190 Sum_probs=74.1
Q ss_pred HHHHhcCC--CCcHHhHHHHHHHHHh-----CCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcC------------
Q 037592 138 HQIFLQMP--VRNLITWNSMISGFAQ-----NGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMG------------ 198 (337)
Q Consensus 138 ~~~~~~~~--~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~------------ 198 (337)
+..|..+. ++|..+|...+..+.. .+..+=....++.|.+.|+.-|..+|..|++.+-+..
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 44555555 5677788887777754 3566777777888899999999999999888775532
Q ss_pred ----chhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 037592 199 ----LIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235 (337)
Q Consensus 199 ----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 235 (337)
+-+-++++++.| +.+|+.||..+-..|+.++.+.+-
T Consensus 134 HYP~QQ~C~I~vLeqM-E~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQM-EWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hCchhhhHHHHHHHHH-HHcCCCCchHHHHHHHHHhccccc
Confidence 234578899999 888999999999999999987764
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.74 Score=39.52 Aligned_cols=133 Identities=11% Similarity=0.102 Sum_probs=84.2
Q ss_pred HHhHHHHHHHHHhCCCHhHHHHHHHHHHhcC-CCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 037592 149 LITWNSMISGFAQNGRGEEALRIFDDMTEGG-TKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMV 227 (337)
Q Consensus 149 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 227 (337)
..+|...++.-.+..-.+.|..+|-++.+.| +.++...+++++..++ .|+...|.++|+.-+..+ +.++.-.+..+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f--~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF--PDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC--CCchHHHHHHH
Confidence 3456666666666667777777777777776 4556666677766554 566777777777654432 22333334556
Q ss_pred HHHHhcCChHHHHHHHHHh----cCCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCC
Q 037592 228 DLLGRAGLLEEAETLIENA----DCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPD 284 (337)
Q Consensus 228 ~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 284 (337)
..+...++-+.|..+|+.. ....-...|..+|.--..-|+...+..+-+++.++.|.
T Consensus 474 ~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 474 LFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence 6667777777777777742 11122456777777666777777777777777666665
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.016 Score=29.88 Aligned_cols=31 Identities=29% Similarity=0.323 Sum_probs=19.5
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHhcCCC
Q 037592 254 LWEVLLGACTTFRNAHVAERVAKKIMELKPD 284 (337)
Q Consensus 254 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 284 (337)
.|..+...+...|++++|++.++++++++|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 3455556666667777777777776666665
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.22 Score=35.58 Aligned_cols=74 Identities=12% Similarity=0.057 Sum_probs=46.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCC--C----cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHh
Q 037592 122 SALVDLYAKCGCVDFAHQIFLQMPV--R----NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS 195 (337)
Q Consensus 122 ~~l~~~~~~~g~~~~A~~~~~~~~~--~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 195 (337)
..-.....+.|++++|.+.|+.+.. | ...+...++.+|.+.+++++|...+++.++..+.-...-|...+.+++
T Consensus 14 y~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 14 YQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 3344555677888888888877762 1 334566677788888888888888888877543322234444444433
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=96.10 E-value=1.4 Score=42.53 Aligned_cols=137 Identities=14% Similarity=0.077 Sum_probs=78.7
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHH
Q 037592 125 VDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGR 204 (337)
Q Consensus 125 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 204 (337)
++.-.+.|.+.+|+.++.--.+.-...|.+....+.....+++|.-.|+..-+ ..-.+.+|...|+|.+|.
T Consensus 915 ~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l 985 (1265)
T KOG1920|consen 915 KNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREAL 985 (1265)
T ss_pred HHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHH
Confidence 33334444555555444322222223445555556667778888777766532 123456777788888888
Q ss_pred HHHHHHHHhcCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHhcCCCchhHHHHHHHHHhcCCChhHHHHHHHHHH
Q 037592 205 KHFASMTKEYRIKPKI--EHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIM 279 (337)
Q Consensus 205 ~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 279 (337)
.+...+.. ..+. .+-..|+..+...++.-+|-++..+....|.. .+..+++...+++|.++.....
T Consensus 986 ~~a~ql~~----~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~-----av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 986 SLAAQLSE----GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEE-----AVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHhhcC----CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHH-----HHHHHhhHhHHHHHHHHHHhcc
Confidence 88776621 2222 22356777777888888888887776544332 2334555556666666655544
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.33 Score=34.99 Aligned_cols=127 Identities=12% Similarity=0.047 Sum_probs=73.4
Q ss_pred HHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 037592 152 WNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLG 231 (337)
Q Consensus 152 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 231 (337)
...++..+...+.......+++.+...+. .+...++.++..|++.+. ......++. ..+.......+..|.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~-------~~~~yd~~~~~~~c~ 80 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN-------KSNHYDIEKVGKLCE 80 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh-------ccccCCHHHHHHHHH
Confidence 34566666667777788888887776653 455667777777775532 233333331 112222334566677
Q ss_pred hcCChHHHHHHHHHhcCCCchhHHHHHHHHHhcC-CChhHHHHHHHHHHhcCCCccchHHHHHHHHHH
Q 037592 232 RAGLLEEAETLIENADCRHDSSLWEVLLGACTTF-RNAHVAERVAKKIMELKPDCHLSYVLLDNVYRA 298 (337)
Q Consensus 232 ~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 298 (337)
+.+.++++.-++.+++...+ .+..+... ++++.|.+++.+ ++++..|..++..+..
T Consensus 81 ~~~l~~~~~~l~~k~~~~~~------Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l~ 137 (140)
T smart00299 81 KAKLYEEAVELYKKDGNFKD------AIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALLD 137 (140)
T ss_pred HcCcHHHHHHHHHhhcCHHH------HHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHHc
Confidence 77777777777777764222 22223333 677777777664 2335567776665543
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.12 Score=42.24 Aligned_cols=160 Identities=12% Similarity=0.041 Sum_probs=111.5
Q ss_pred HhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHH----HHHHHHHhcCC
Q 037592 160 AQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYN----CMVDLLGRAGL 235 (337)
Q Consensus 160 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~ 235 (337)
...|++.+|-..++++++. .+.|...+.-.=.+|...|+.+.-...+++++.. ..++...|. .+.-++..+|-
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhcc
Confidence 4568888888889998876 5557777777778889999999988888888653 245543333 33345567899
Q ss_pred hHHHHHHHHHh-cCCC-chhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCc----cchHHHHHHHHHHcCChhhHHHHH
Q 037592 236 LEEAETLIENA-DCRH-DSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDC----HLSYVLLDNVYRAVGRWNDAFKIR 309 (337)
Q Consensus 236 ~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~ 309 (337)
+++|++.-++. .+.| |.-.-.+....+.-.|+..++.++..+-...-... .--|-...-.+.+.+.++.|+++|
T Consensus 191 y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred chhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 99999998873 4443 44445566677888899999999887765522121 123445566777889999999999
Q ss_pred HHHHHhCCccCCC
Q 037592 310 TLMKYSGVKKMPG 322 (337)
Q Consensus 310 ~~m~~~~~~~~~~ 322 (337)
+.=+-.....+.+
T Consensus 271 D~ei~k~l~k~Da 283 (491)
T KOG2610|consen 271 DREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHhhccch
Confidence 8765554554444
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.27 Score=42.61 Aligned_cols=57 Identities=14% Similarity=0.098 Sum_probs=31.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHh-cCCCc---hhHHHHHHHHHhcCCChhHHHHHHHHHHh
Q 037592 224 NCMVDLLGRAGLLEEAETLIENA-DCRHD---SSLWEVLLGACTTFRNAHVAERVAKKIME 280 (337)
Q Consensus 224 ~~l~~~~~~~g~~~~A~~~~~~~-~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 280 (337)
..+..+..+.|+.++|.+.|+++ +..|. ......|+.++...+.+.++..++.+.-+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 34555555666666666666654 22222 12344556666666666666666666543
|
The molecular function of this protein is uncertain. |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.91 Score=39.64 Aligned_cols=174 Identities=14% Similarity=0.088 Sum_probs=123.0
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHHhh--cCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHH
Q 037592 51 NSVSSSALLQGYCQTGDFESVIRIFREMEE--IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLY 128 (337)
Q Consensus 51 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 128 (337)
|-...-+++..+..+-++.-+..+..+|.. .+-..|..++.+|... ..+.-..+|+++++..+ .++..-..|+..|
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~~y 142 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELADKY 142 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHHHH
Confidence 555667888889888888889999999988 5666788899999888 67788899999998876 5555555666666
Q ss_pred HhcCCHHHHHHHHhcCCCC------cH---HhHHHHHHHHHhCCCHhHHHHHHHHHHhc-CCCCCHhHHHHHHHHHhhcC
Q 037592 129 AKCGCVDFAHQIFLQMPVR------NL---ITWNSMISGFAQNGRGEEALRIFDDMTEG-GTKPDHVSFIGVLSACSHMG 198 (337)
Q Consensus 129 ~~~g~~~~A~~~~~~~~~~------~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~~ 198 (337)
.+ ++.+++...|.++..+ +. ..|.-+... -..+.+..+.+..++.+. |..--...+.-+-.-|....
T Consensus 143 Ek-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~e 219 (711)
T COG1747 143 EK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENE 219 (711)
T ss_pred HH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcccc
Confidence 65 8888888888877611 11 255555542 235677777777776553 44444555666667788889
Q ss_pred chhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 037592 199 LIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLG 231 (337)
Q Consensus 199 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 231 (337)
++++|++++..+++.. ..|..+...++.-+.
T Consensus 220 N~~eai~Ilk~il~~d--~k~~~ar~~~i~~lR 250 (711)
T COG1747 220 NWTEAIRILKHILEHD--EKDVWARKEIIENLR 250 (711)
T ss_pred CHHHHHHHHHHHhhhc--chhhhHHHHHHHHHH
Confidence 9999999999886643 445555555555443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.57 Score=37.06 Aligned_cols=68 Identities=13% Similarity=0.001 Sum_probs=34.9
Q ss_pred HHHcCCChhHHHHHHHHHhh--cCc----ccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHH
Q 037592 61 GYCQTGDFESVIRIFREMEE--IDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLY 128 (337)
Q Consensus 61 ~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 128 (337)
.-.+.|++++|.+.|+.+.. |.. .+...++-++.+.++++.|....++.++..+.....-|...+.++
T Consensus 43 ~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgL 116 (254)
T COG4105 43 TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGL 116 (254)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHH
Confidence 34456666666666666665 211 123334445556666666666666666654443333333333333
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.93 Score=39.50 Aligned_cols=145 Identities=14% Similarity=0.052 Sum_probs=71.9
Q ss_pred HHHHHHcCCChhHHHHHHHHHhh--cCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHH
Q 037592 58 LLQGYCQTGDFESVIRIFREMEE--IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVD 135 (337)
Q Consensus 58 l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 135 (337)
++.-.-+..+.+.-+++-.++.+ ||..+.-.++ +--......++++++++.++.|-..-. ..... ...|..-
T Consensus 174 IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE~~lg--~s~~~---~~~g~~~ 247 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALEINPDCADAYILL-AEEEASTIVEAEELLRQAVKAGEASLG--KSQFL---QHHGHFW 247 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHHHhhc--hhhhh---hcccchh
Confidence 44444455566666666666665 4332222111 122334466777777777766531000 00000 0111111
Q ss_pred HHHHHHhcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCC-CHhHHHHHHHHHhhcCchhhHHHHHHHH
Q 037592 136 FAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKP-DHVSFIGVLSACSHMGLIDRGRKHFASM 210 (337)
Q Consensus 136 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 210 (337)
+. ...+-..+-..+-.-+..+..+.|+.++|++.+++|.+..... .......|+.++...+.+.++..++.+.
T Consensus 248 e~--~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 248 EA--WHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred hh--hhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 10 1111111122333446666677788888888888876542221 2234556777777788888887777775
|
The molecular function of this protein is uncertain. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.047 Score=43.93 Aligned_cols=61 Identities=21% Similarity=0.226 Sum_probs=45.3
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHH
Q 037592 254 LWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKY 314 (337)
Q Consensus 254 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 314 (337)
++..++..+...|+.+.+...+++....+|-+...|..++.+|.+.|+...|+..|+.+.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 4555666777777777777777777777777777777777777777777777777777654
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.068 Score=40.29 Aligned_cols=100 Identities=13% Similarity=0.023 Sum_probs=64.9
Q ss_pred HHHhhcCchhhHHHHHHHHHHhcCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHH-hcCCCch-hHHHHHHHHHhc
Q 037592 192 SACSHMGLIDRGRKHFASMTKEYRIKPK-----IEHYNCMVDLLGRAGLLEEAETLIEN-ADCRHDS-SLWEVLLGACTT 264 (337)
Q Consensus 192 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~-~~~~~l~~~~~~ 264 (337)
+-+.+.|++++|..-|.+++... ++. ...|..-..++.+.+.++.|++--.+ +...|+- .....-..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~c--p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESC--PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhC--ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh
Confidence 34667899999999998887643 332 23344445567777888888776654 3444422 122222356888
Q ss_pred CCChhHHHHHHHHHHhcCCCccchHHHHH
Q 037592 265 FRNAHVAERVAKKIMELKPDCHLSYVLLD 293 (337)
Q Consensus 265 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 293 (337)
..+++.|+.-|+++.+.+|....+-...+
T Consensus 181 ~ek~eealeDyKki~E~dPs~~ear~~i~ 209 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESDPSRREAREAIA 209 (271)
T ss_pred hhhHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 88899999999999998888654443333
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.83 E-value=1.3 Score=39.50 Aligned_cols=292 Identities=12% Similarity=0.086 Sum_probs=160.7
Q ss_pred hhhHHHHHHHHhcCCCCchHhHHHHHHHHH-hcCChHHHHHHHHHcccC------ChhhHHHHHHHHHcCCChhHHHHHH
Q 037592 3 KQGKEVHAKVITLGLCGNVVVESSLVDMYG-KCGLVDESHRVFDKMLKK------NSVSSSALLQGYCQTGDFESVIRIF 75 (337)
Q Consensus 3 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~ 75 (337)
+.+.++|+..++ |++.+...|...+..+. ..|+.+...+.|+....- +...|...|.--..++++.....+|
T Consensus 96 ~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iy 174 (577)
T KOG1258|consen 96 ENSVKVFERGVQ-AIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIY 174 (577)
T ss_pred HHHHHHHHHHHH-hhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHH
Confidence 457788888876 56777777777776554 457777888888877332 4556777777777888888888888
Q ss_pred HHHhh-cCcccHHHHHHHHHh---h------chhhhhHHHHHHHH--------------------HhhC-----------
Q 037592 76 REMEE-IDLFSFGIVLRACAG---L------AALRLGKEVHCQYI--------------------RRSG----------- 114 (337)
Q Consensus 76 ~~~~~-~~~~~~~~l~~~~~~---~------~~~~~a~~~~~~~~--------------------~~~~----------- 114 (337)
++.++ |.. .++....-|.+ . ...+++.++-.... ..+-
T Consensus 175 eRileiP~~-~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~ 253 (577)
T KOG1258|consen 175 ERILEIPLH-QLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTI 253 (577)
T ss_pred HHHHhhhhh-HhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHH
Confidence 88876 221 11111100000 0 00111111100000 0000
Q ss_pred ----------------------------------------CCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCC---cHHh
Q 037592 115 ----------------------------------------CKDVIIESALVDLYAKCGCVDFAHQIFLQMPVR---NLIT 151 (337)
Q Consensus 115 ----------------------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~ 151 (337)
+++..+|...+..-.+.|+.+.+.-+|++..-| -...
T Consensus 254 l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~ef 333 (577)
T KOG1258|consen 254 LKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEF 333 (577)
T ss_pred HHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHH
Confidence 012233344444444445555555555444422 1123
Q ss_pred HHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHH-HhhcCchhhHHHHHHHHHHhcCCCCC-HHHHHHHHHH
Q 037592 152 WNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSA-CSHMGLIDRGRKHFASMTKEYRIKPK-IEHYNCMVDL 229 (337)
Q Consensus 152 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~ 229 (337)
|--.+.-....|+.+-|..++....+--++ +......+-.. +-..|+++.|..+++.+..+ . |+ ...-..-+..
T Consensus 334 Wiky~~~m~~~~~~~~~~~~~~~~~~i~~k-~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~ 409 (577)
T KOG1258|consen 334 WIKYARWMESSGDVSLANNVLARACKIHVK-KTPIIHLLEARFEESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINW 409 (577)
T ss_pred HHHHHHHHHHcCchhHHHHHHHhhhhhcCC-CCcHHHHHHHHHHHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhH
Confidence 333333334446666666666655544332 22222222222 23467999999999998554 3 54 3333344556
Q ss_pred HHhcCChHHHH---HHHHHh-cCCCchhHHHHHH-----HHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcC
Q 037592 230 LGRAGLLEEAE---TLIENA-DCRHDSSLWEVLL-----GACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300 (337)
Q Consensus 230 ~~~~g~~~~A~---~~~~~~-~~~~~~~~~~~l~-----~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 300 (337)
..+.|+.+.+. +++... ..+-+......+. -.+.-.++.+.|..++.++.+..|++...|..++......+
T Consensus 410 e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 410 ERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 67788888887 444432 1122222222222 12556788999999999999999998888988888776665
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.094 Score=36.55 Aligned_cols=49 Identities=27% Similarity=0.289 Sum_probs=20.7
Q ss_pred HhcCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHh
Q 037592 129 AKCGCVDFAHQIFLQMP---VRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177 (337)
Q Consensus 129 ~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 177 (337)
...|+.+.|++.|.+.. +.....||.-.+++.-.|+.++|++-+++..+
T Consensus 54 aE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 54 AEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 33444444444444333 22334444444444444444444444444433
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.98 Score=37.25 Aligned_cols=143 Identities=12% Similarity=0.030 Sum_probs=94.8
Q ss_pred HhcCChHHHHHHHHHccc---CChhhHHHHHHHHHcCCChhHHHHHHHHHhh---cCcccHHHHH----HHHHhhchhhh
Q 037592 32 GKCGLVDESHRVFDKMLK---KNSVSSSALLQGYCQTGDFESVIRIFREMEE---IDLFSFGIVL----RACAGLAALRL 101 (337)
Q Consensus 32 ~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~----~~~~~~~~~~~ 101 (337)
-.+|++.+|-..++++.+ .|..++.-.=.+|.-.|+...-...++++.. +|...|+.+- -++...|-+++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 345666666666666632 2566666666777788888888888887776 6665554432 23456788888
Q ss_pred hHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCC----c---HHhHHHHHHHHHhCCCHhHHHHHHHH
Q 037592 102 GKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVR----N---LITWNSMISGFAQNGRGEEALRIFDD 174 (337)
Q Consensus 102 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~---~~~~~~l~~~~~~~~~~~~a~~~~~~ 174 (337)
|++.-++.++.+. -|.-...++...+...|++.++.++..+-... + ..-|-...-.+...+.++.|+++|++
T Consensus 194 AEk~A~ralqiN~-~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 194 AEKQADRALQINR-FDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHHhhccCCC-cchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 8888888877765 55666667777778888888888887766521 1 11233334455667888888888875
Q ss_pred H
Q 037592 175 M 175 (337)
Q Consensus 175 m 175 (337)
-
T Consensus 273 e 273 (491)
T KOG2610|consen 273 E 273 (491)
T ss_pred H
Confidence 3
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.99 Score=36.99 Aligned_cols=18 Identities=11% Similarity=0.449 Sum_probs=14.5
Q ss_pred HcCCChhHHHHHHHHHhh
Q 037592 63 CQTGDFESVIRIFREMEE 80 (337)
Q Consensus 63 ~~~g~~~~A~~~~~~~~~ 80 (337)
.++|+.+.|..++.+...
T Consensus 4 ~~~~~~~~A~~~~~K~~~ 21 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKD 21 (278)
T ss_pred hhhCCHHHHHHHHHHhhh
Confidence 467888888888888776
|
It is also involved in sporulation []. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.55 Score=33.82 Aligned_cols=85 Identities=13% Similarity=0.060 Sum_probs=41.7
Q ss_pred HHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHh
Q 037592 87 GIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGE 166 (337)
Q Consensus 87 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 166 (337)
..++..+...+.......+++.+...+. .+...++.++..|++.+ ..+..+.++. ..+.......+..|.+.+-++
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~ 86 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLYE 86 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcHH
Confidence 3455555555566666666666666553 55566666666666543 2333333331 112222223444444444444
Q ss_pred HHHHHHHHH
Q 037592 167 EALRIFDDM 175 (337)
Q Consensus 167 ~a~~~~~~m 175 (337)
++..++.++
T Consensus 87 ~~~~l~~k~ 95 (140)
T smart00299 87 EAVELYKKD 95 (140)
T ss_pred HHHHHHHhh
Confidence 444444443
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.33 Score=36.55 Aligned_cols=129 Identities=7% Similarity=0.016 Sum_probs=62.8
Q ss_pred hHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHH--HHHHHhhcCchhhHHHHHHHHHHhcCCCCCH----HHHH
Q 037592 151 TWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIG--VLSACSHMGLIDRGRKHFASMTKEYRIKPKI----EHYN 224 (337)
Q Consensus 151 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~--l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~ 224 (337)
.|..++.... .+.. +.....+++...........+.. +...+...|++++|...++..+. .+.|. .+--
T Consensus 56 ~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~---~t~De~lk~l~~l 130 (207)
T COG2976 56 QYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALA---QTKDENLKALAAL 130 (207)
T ss_pred HHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc---cchhHHHHHHHHH
Confidence 4444554433 2333 44444555544321211122222 23455666777777777766542 12221 2223
Q ss_pred HHHHHHHhcCChHHHHHHHHHhcCCC-chhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCC
Q 037592 225 CMVDLLGRAGLLEEAETLIENADCRH-DSSLWEVLLGACTTFRNAHVAERVAKKIMELKPD 284 (337)
Q Consensus 225 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 284 (337)
.|.......|.+++|+..++....+. .......-...+...|+-++|+.-|.++++..++
T Consensus 131 RLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 131 RLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 34455566677777777776543211 1111112224566777777777777777665543
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.19 Score=43.84 Aligned_cols=132 Identities=15% Similarity=0.105 Sum_probs=80.4
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHcccCChhhHHHHHHHHHcCCChhHHHHHHHHHhhcCcccHHHHHHHHHhhchhhh
Q 037592 22 VVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRL 101 (337)
Q Consensus 22 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 101 (337)
...+.++..+.+.|..+.|+.+-..- ..-.....+.|+++.|.++.++. .+...|..|.......|+++-
T Consensus 296 ~~~~~i~~fL~~~G~~e~AL~~~~D~--------~~rFeLAl~lg~L~~A~~~a~~~--~~~~~W~~Lg~~AL~~g~~~l 365 (443)
T PF04053_consen 296 DQGQSIARFLEKKGYPELALQFVTDP--------DHRFELALQLGNLDIALEIAKEL--DDPEKWKQLGDEALRQGNIEL 365 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHSS-H--------HHHHHHHHHCT-HHHHHHHCCCC--STHHHHHHHHHHHHHTTBHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHhhcCCh--------HHHhHHHHhcCCHHHHHHHHHhc--CcHHHHHHHHHHHHHcCCHHH
Confidence 34788888889999999998876332 23344456677777777666554 345577778888888888888
Q ss_pred hHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHH
Q 037592 102 GKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDD 174 (337)
Q Consensus 102 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 174 (337)
|++.|++... +..|+-.|.-.|+.++-.++.+...... -++....++.-.|+.++..+++.+
T Consensus 366 Ae~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~--~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 366 AEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG--DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT---HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc--CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8777765543 3456666777777766666655444211 133334444455677776666644
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.52 E-value=1.5 Score=38.09 Aligned_cols=62 Identities=11% Similarity=-0.012 Sum_probs=30.1
Q ss_pred cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHh-HHHHHHHHHhhcCchhhHHHHHHHHH
Q 037592 148 NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHV-SFIGVLSACSHMGLIDRGRKHFASMT 211 (337)
Q Consensus 148 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~ 211 (337)
|..+...+..+....++++.|...|++... ..||.. +|....-.+.-.|+.++|.+.+++.+
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 444444555544555556666666665555 233322 22222223334455666666555543
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.2 Score=36.90 Aligned_cols=132 Identities=11% Similarity=0.056 Sum_probs=85.7
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHHhhcCcccHHHHH-----HHHHhhchhhhhHHHHHHHHHhhCCCCch-hHHH-
Q 037592 51 NSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVL-----RACAGLAALRLGKEVHCQYIRRSGCKDVI-IESA- 123 (337)
Q Consensus 51 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~- 123 (337)
+...|..-+. ..+.|..++|+.-|..+.+.+...|-.|. ....+.|+-..|...|.++-.....|-.. -...
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 3444444444 45677788888888888875555554443 34567788888888888887664444322 1111
Q ss_pred -HHHHHHhcCCHHHHHHHHhcCCCC-c---HHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCC
Q 037592 124 -LVDLYAKCGCVDFAHQIFLQMPVR-N---LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPD 183 (337)
Q Consensus 124 -l~~~~~~~g~~~~A~~~~~~~~~~-~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 183 (337)
-.-.+...|.+++...-.+.+..+ + ...-.+|.-+-.+.|++.+|.+.|..+......|.
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~apr 201 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPR 201 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcH
Confidence 122456778898888888777632 2 23456677777889999999999998877544443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.033 Score=30.87 Aligned_cols=28 Identities=11% Similarity=0.032 Sum_probs=14.2
Q ss_pred HHHHHHHHHhhchhhhhHHHHHHHHHhh
Q 037592 86 FGIVLRACAGLAALRLGKEVHCQYIRRS 113 (337)
Q Consensus 86 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 113 (337)
+..+...+...|++++|+++++++++..
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3444445555555555555555555543
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.61 Score=32.76 Aligned_cols=59 Identities=7% Similarity=0.246 Sum_probs=32.3
Q ss_pred HHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHH
Q 037592 153 NSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTK 212 (337)
Q Consensus 153 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 212 (337)
...+......|+-++-.+++..+.+. -.+++.....+..+|.+.|+..++.+++.++-+
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 34455556666666666666666542 344555555666677777777777777666644
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.8 Score=33.90 Aligned_cols=131 Identities=17% Similarity=0.150 Sum_probs=76.1
Q ss_pred cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHh-HHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHH-HHHH
Q 037592 148 NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHV-SFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIE-HYNC 225 (337)
Q Consensus 148 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~ 225 (337)
....|..-+. +.+.+..++|+.-|..+.+.|...-.. ............|+...|...|+++-... ..|-.. -...
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt-~~P~~~rd~AR 135 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADT-SIPQIGRDLAR 135 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccC-CCcchhhHHHH
Confidence 3445554444 356678888888888887765442111 11122234557788888888888885432 222211 1111
Q ss_pred --HHHHHHhcCChHHHHHHHHHhcCCCch---hHHHHHHHHHhcCCChhHHHHHHHHHHh
Q 037592 226 --MVDLLGRAGLLEEAETLIENADCRHDS---SLWEVLLGACTTFRNAHVAERVAKKIME 280 (337)
Q Consensus 226 --l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 280 (337)
-.-.+...|.++......+.+....++ ..-..|.-+-.+.|++..|.+.|..+..
T Consensus 136 lraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 136 LRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 122455678888887777776432222 2223455556688888888888887766
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.05 Score=28.56 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHcCChhhHHHHHHHHH
Q 037592 288 SYVLLDNVYRAVGRWNDAFKIRTLMK 313 (337)
Q Consensus 288 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 313 (337)
+|..|+.+|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788899999999999999998855
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.14 E-value=3.4 Score=40.09 Aligned_cols=101 Identities=15% Similarity=0.169 Sum_probs=55.9
Q ss_pred HHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhcCCCchh--HHHHHHHHHhcCCChh
Q 037592 192 SACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSS--LWEVLLGACTTFRNAH 269 (337)
Q Consensus 192 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~ 269 (337)
..+.....+++|--.|+..-+ ...-+.+|..+|+|++|+.+-.++...-+.. +-..|+.-+...+++-
T Consensus 947 ~hL~~~~~~~~Aal~Ye~~Gk----------lekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~ 1016 (1265)
T KOG1920|consen 947 DHLREELMSDEAALMYERCGK----------LEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHY 1016 (1265)
T ss_pred HHHHHhccccHHHHHHHHhcc----------HHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccch
Confidence 334445566666655554411 1223566777777777777777664333322 2256667788888888
Q ss_pred HHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHH
Q 037592 270 VAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIR 309 (337)
Q Consensus 270 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 309 (337)
+|-++..+..+ +|. ..+..|++...|++|..+.
T Consensus 1017 eAa~il~e~~s-d~~------~av~ll~ka~~~~eAlrva 1049 (1265)
T KOG1920|consen 1017 EAAKILLEYLS-DPE------EAVALLCKAKEWEEALRVA 1049 (1265)
T ss_pred hHHHHHHHHhc-CHH------HHHHHHhhHhHHHHHHHHH
Confidence 88777766543 111 2233444445555555543
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.048 Score=28.65 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=11.3
Q ss_pred HHHHHHHHHcCCChhHHHHHHHH
Q 037592 55 SSALLQGYCQTGDFESVIRIFRE 77 (337)
Q Consensus 55 ~~~l~~~~~~~g~~~~A~~~~~~ 77 (337)
|+.|...|.+.|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44455555555555555555554
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.59 Score=35.28 Aligned_cols=96 Identities=15% Similarity=0.085 Sum_probs=48.7
Q ss_pred hHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCH--hHHHHHHHHHhhcCchhhHHHHHHHHHHhcC--CCCCHHHHHHH
Q 037592 151 TWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDH--VSFIGVLSACSHMGLIDRGRKHFASMTKEYR--IKPKIEHYNCM 226 (337)
Q Consensus 151 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l 226 (337)
.+..+...|++.|+.++|++.|.++.+....|.. ..+..++......+++..+...+.++..... -+++....-..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 4555666666666666666666666665443332 2344455555666666666666655522111 11111111111
Q ss_pred H--HHHHhcCChHHHHHHHHHh
Q 037592 227 V--DLLGRAGLLEEAETLIENA 246 (337)
Q Consensus 227 ~--~~~~~~g~~~~A~~~~~~~ 246 (337)
. -.+...+++.+|-+.|-..
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHcc
Confidence 1 1233456777777776553
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.03 E-value=2.5 Score=39.37 Aligned_cols=214 Identities=11% Similarity=0.020 Sum_probs=129.5
Q ss_pred cHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCC--chhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhC
Q 037592 85 SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD--VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQN 162 (337)
Q Consensus 85 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~ 162 (337)
....-+..+.+...++-|..+.+. .+..++ ..+.....+.+.+.|++++|...|-+...--.. ..+|.-|...
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~--s~Vi~kfLda 410 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP--SEVIKKFLDA 410 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh--HHHHHHhcCH
Confidence 456677777888888888776533 232222 233444556667889999998888766522111 1245666677
Q ss_pred CCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 037592 163 GRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETL 242 (337)
Q Consensus 163 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 242 (337)
.+..+-..+++.+.+.|+. +...-..|+.+|.+.++.++-.++.+.. .. |.- ..-....+..+.+.+-.++|..+
T Consensus 411 q~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~-~~-g~~--~fd~e~al~Ilr~snyl~~a~~L 485 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKC-DK-GEW--FFDVETALEILRKSNYLDEAELL 485 (933)
T ss_pred HHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcC-CC-cce--eeeHHHHHHHHHHhChHHHHHHH
Confidence 7777888888888888876 4444466888999999988877766654 22 211 11123456667777777888777
Q ss_pred HHHhcCCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCc-cchHHHHHHHHHHcCChhhHHHHHHHHHHhCC
Q 037592 243 IENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDC-HLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGV 317 (337)
Q Consensus 243 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 317 (337)
-.+.+..+.. .. -.+-..+++++|++.+..+ .|+. ..+....+..+.. ..+++-..++-+......
T Consensus 486 A~k~~~he~v--l~---ille~~~ny~eAl~yi~sl---p~~e~l~~l~kyGk~Ll~-h~P~~t~~ili~~~t~~~ 552 (933)
T KOG2114|consen 486 ATKFKKHEWV--LD---ILLEDLHNYEEALRYISSL---PISELLRTLNKYGKILLE-HDPEETMKILIELITELN 552 (933)
T ss_pred HHHhccCHHH--HH---HHHHHhcCHHHHHHHHhcC---CHHHHHHHHHHHHHHHHh-hChHHHHHHHHHHHhhcC
Confidence 7766543222 22 2345678899998887643 3331 1122222333333 456676766665554433
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.066 Score=43.84 Aligned_cols=92 Identities=12% Similarity=0.065 Sum_probs=65.5
Q ss_pred HHHHhhcCchhhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHh-c-CCCchhHHHHHHHHHhcCCC
Q 037592 191 LSACSHMGLIDRGRKHFASMTKEYRIKP-KIEHYNCMVDLLGRAGLLEEAETLIENA-D-CRHDSSLWEVLLGACTTFRN 267 (337)
Q Consensus 191 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~ 267 (337)
.+-|.+.|.+++|+..|...+ .+.| ++.++..-..+|.+..++..|+.--+.. . .+.=...|..-+.+-...|+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 456778899999999998775 3345 7888888888888888888777655442 1 11122345555556667788
Q ss_pred hhHHHHHHHHHHhcCCCc
Q 037592 268 AHVAERVAKKIMELKPDC 285 (337)
Q Consensus 268 ~~~a~~~~~~~~~~~p~~ 285 (337)
..+|.+-++.++++.|++
T Consensus 181 ~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKN 198 (536)
T ss_pred HHHHHHhHHHHHhhCccc
Confidence 888888888888899985
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.92 E-value=1.4 Score=34.43 Aligned_cols=52 Identities=19% Similarity=0.068 Sum_probs=29.7
Q ss_pred CChHHHHHHHHHhc-----CCCchhHHHHHHH---HHhcCCChhHHHHHHHHHHhcCCCc
Q 037592 234 GLLEEAETLIENAD-----CRHDSSLWEVLLG---ACTTFRNAHVAERVAKKIMELKPDC 285 (337)
Q Consensus 234 g~~~~A~~~~~~~~-----~~~~~~~~~~l~~---~~~~~g~~~~a~~~~~~~~~~~p~~ 285 (337)
.++++|+..|+..+ ...+...-..++. --+..+++.+|+++|++.....-++
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 45566666665531 1222222223332 2467788999999999888755444
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.049 Score=28.17 Aligned_cols=32 Identities=19% Similarity=0.105 Sum_probs=22.3
Q ss_pred HHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHH
Q 037592 106 HCQYIRRSGCKDVIIESALVDLYAKCGCVDFAH 138 (337)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 138 (337)
|++.++..+ .+...|+.+...|...|++++|+
T Consensus 2 y~kAie~~P-~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNP-NNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCC-CCHHHHHHHHHHHHHCcCHHhhc
Confidence 445555554 56777777888888888877775
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=94.82 E-value=1.1 Score=32.80 Aligned_cols=108 Identities=18% Similarity=0.146 Sum_probs=61.5
Q ss_pred HHHHhcCChHHHHHHHHHc--ccCChhh-HHHHHHHHHcCCChhHHHHHHHHHhh--cCcccHHHHHHHHHhhchhhhhH
Q 037592 29 DMYGKCGLVDESHRVFDKM--LKKNSVS-SSALLQGYCQTGDFESVIRIFREMEE--IDLFSFGIVLRACAGLAALRLGK 103 (337)
Q Consensus 29 ~~~~~~~~~~~A~~~~~~~--~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~ 103 (337)
..-.+.++.+++..+++.+ ..|.... -..-...++..|++.+|+.+|+.+.+ |....-..|+..|.....-..=.
T Consensus 18 ~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~Wr 97 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSWR 97 (160)
T ss_pred HHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHHH
Confidence 3445678888998888887 4554332 23334557788999999999999877 33333344444444443333334
Q ss_pred HHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHH
Q 037592 104 EVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQ 139 (337)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 139 (337)
.+-+++++.+..|+. ..++..+....+...|..
T Consensus 98 ~~A~evle~~~d~~a---~~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 98 RYADEVLESGADPDA---RALVRALLARADLEPAHE 130 (160)
T ss_pred HHHHHHHhcCCChHH---HHHHHHHHHhccccchhh
Confidence 444455555433332 234455554444444433
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.057 Score=27.72 Aligned_cols=30 Identities=23% Similarity=0.218 Sum_probs=17.6
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHhcCCC
Q 037592 255 WEVLLGACTTFRNAHVAERVAKKIMELKPD 284 (337)
Q Consensus 255 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 284 (337)
|..+...|.+.|++++|...|+++.+++|+
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 444555566666666666666666665553
|
... |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.71 Score=34.84 Aligned_cols=17 Identities=18% Similarity=0.057 Sum_probs=9.7
Q ss_pred HhcCCHHHHHHHHhcCC
Q 037592 129 AKCGCVDFAHQIFLQMP 145 (337)
Q Consensus 129 ~~~g~~~~A~~~~~~~~ 145 (337)
...|++..|-+.|-+..
T Consensus 124 l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 124 LAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHhchHHHHHHHHHccC
Confidence 34566666666665544
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.32 Score=39.29 Aligned_cols=55 Identities=16% Similarity=0.349 Sum_probs=26.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHH
Q 037592 122 SALVDLYAKCGCVDFAHQIFLQMP---VRNLITWNSMISGFAQNGRGEEALRIFDDMT 176 (337)
Q Consensus 122 ~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 176 (337)
..++..+...|+++.+.+.++++. +-+...|..++.+|.+.|+...|+..|+++.
T Consensus 157 ~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 157 TKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 334444444455555555444444 1133445555555555555555555555443
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=94.68 E-value=2.6 Score=36.41 Aligned_cols=251 Identities=10% Similarity=0.086 Sum_probs=133.4
Q ss_pred HHHhcCChHHHHHHHHHcccC---C------hhhHHHHHHHHHcCCChhHHHHHHHHHhh--cCcccHHHHHHH--HHhh
Q 037592 30 MYGKCGLVDESHRVFDKMLKK---N------SVSSSALLQGYCQTGDFESVIRIFREMEE--IDLFSFGIVLRA--CAGL 96 (337)
Q Consensus 30 ~~~~~~~~~~A~~~~~~~~~~---~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~--~~~~ 96 (337)
.+-+.+++++|.++|.++.+. + ...-+.++++|... +.+.....+....+ | ...|..+..+ +.+.
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~~-~s~~l~LF~~L~~Y~~ 92 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQFG-KSAYLPLFKALVAYKQ 92 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHh
Confidence 345678999999999998332 2 12235566776544 45555555555555 5 4456666554 4577
Q ss_pred chhhhhHHHHHHHHHh--hCCC------------CchhHHHHHHHHHhcCCHHHHHHHHhcCC----C----CcHHhHHH
Q 037592 97 AALRLGKEVHCQYIRR--SGCK------------DVIIESALVDLYAKCGCVDFAHQIFLQMP----V----RNLITWNS 154 (337)
Q Consensus 97 ~~~~~a~~~~~~~~~~--~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~----~~~~~~~~ 154 (337)
+++++|.+.+...... +..+ +...=+..++++...|++.+++.+++++. + =+..+|+.
T Consensus 93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~ 172 (549)
T PF07079_consen 93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDR 172 (549)
T ss_pred hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHH
Confidence 8899998888777655 2221 12222456777888899999988888876 1 26667776
Q ss_pred HHHHHHhC--------CC-------HhHHHHHHHHHHhc------CCCCCHhHHHHHHHHHhhc--CchhhHHHHHHHHH
Q 037592 155 MISGFAQN--------GR-------GEEALRIFDDMTEG------GTKPDHVSFIGVLSACSHM--GLIDRGRKHFASMT 211 (337)
Q Consensus 155 l~~~~~~~--------~~-------~~~a~~~~~~m~~~------~~~p~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~ 211 (337)
++-.+.++ .. ++-+.-+.++|... .+-|....+..++....-. .+..--.++++.-
T Consensus 173 ~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~W- 251 (549)
T PF07079_consen 173 AVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENW- 251 (549)
T ss_pred HHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHH-
Confidence 44433321 11 22222233333221 1234444444444333221 1122222333322
Q ss_pred HhcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHhc-------CCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCC
Q 037592 212 KEYRIKPKI-EHYNCMVDLLGRAGLLEEAETLIENAD-------CRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKP 283 (337)
Q Consensus 212 ~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 283 (337)
+.+-+.|+- -+...|...+.+ +.+++..+-+.+. .+.-..++..++....+.++...|.+.+.-..-++|
T Consensus 252 e~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp 329 (549)
T PF07079_consen 252 ENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDP 329 (549)
T ss_pred HhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCC
Confidence 222344442 222333333333 4444444433221 111234566666667777777777777777777777
Q ss_pred Cc
Q 037592 284 DC 285 (337)
Q Consensus 284 ~~ 285 (337)
+.
T Consensus 330 ~~ 331 (549)
T PF07079_consen 330 RI 331 (549)
T ss_pred cc
Confidence 74
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=94.60 E-value=2.1 Score=35.07 Aligned_cols=237 Identities=10% Similarity=-0.044 Sum_probs=135.2
Q ss_pred HHHcccCChhhHHHHHHHHHcCCChhHHHHHHHHHhh-cCcccHHHHHHHHHhhchh----hhhHHHHHHHHHhhCCCCc
Q 037592 44 FDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEE-IDLFSFGIVLRACAGLAAL----RLGKEVHCQYIRRSGCKDV 118 (337)
Q Consensus 44 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~ 118 (337)
++.+.++|.......+.++...|.. ++...+..+.. +|...-...+.++.+.|+. +++...+..+... .++.
T Consensus 29 ~~~L~d~d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~ 105 (280)
T PRK09687 29 FRLLDDHNSLKRISSIRVLQLRGGQ-DVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSA 105 (280)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCcc-hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCH
Confidence 3334556776777777777766653 34444444444 6666666777777777764 3455555555332 2555
Q ss_pred hhHHHHHHHHHhcCC-----HHHHHHHHhc-CCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHH
Q 037592 119 IIESALVDLYAKCGC-----VDFAHQIFLQ-MPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLS 192 (337)
Q Consensus 119 ~~~~~l~~~~~~~g~-----~~~A~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 192 (337)
.+....+.++...+. ...+...+.. +..++..+-...+.++.+.++ ++++..+-.+.+. ++...-...+.
T Consensus 106 ~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~ 181 (280)
T PRK09687 106 CVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAF 181 (280)
T ss_pred HHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHH
Confidence 555555555555432 1233443433 234566666667777777766 4566666666652 34444444445
Q ss_pred HHhhcC-chhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhcCCCchhHHHHHHHHHhcCCChhHH
Q 037592 193 ACSHMG-LIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVA 271 (337)
Q Consensus 193 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 271 (337)
++.+.+ ..+.+...+..++. .++..+....+.++.+.|+.+-...+.+.+.. ++. ....+.++...|.. +|
T Consensus 182 aLg~~~~~~~~~~~~L~~~L~----D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~-~~~--~~~a~~ALg~ig~~-~a 253 (280)
T PRK09687 182 ALNSNKYDNPDIREAFVAMLQ----DKNEEIRIEAIIGLALRKDKRVLSVLIKELKK-GTV--GDLIIEAAGELGDK-TL 253 (280)
T ss_pred HHhcCCCCCHHHHHHHHHHhc----CCChHHHHHHHHHHHccCChhHHHHHHHHHcC-Cch--HHHHHHHHHhcCCH-hH
Confidence 555442 23456666666543 45667777778888888874433333444443 232 34566777777775 67
Q ss_pred HHHHHHHHhcCCCccchHHHHHHHH
Q 037592 272 ERVAKKIMELKPDCHLSYVLLDNVY 296 (337)
Q Consensus 272 ~~~~~~~~~~~p~~~~~~~~l~~~~ 296 (337)
...+..+.+..|+ ...-...+.++
T Consensus 254 ~p~L~~l~~~~~d-~~v~~~a~~a~ 277 (280)
T PRK09687 254 LPVLDTLLYKFDD-NEIITKAIDKL 277 (280)
T ss_pred HHHHHHHHhhCCC-hhHHHHHHHHH
Confidence 7888887776775 44444444443
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.21 E-value=2.3 Score=33.99 Aligned_cols=257 Identities=15% Similarity=0.171 Sum_probs=142.8
Q ss_pred cCCCCchHhHHHHHHH-HHhcCChHHHHHHHHHcccC-------ChhhHHHHHHHHHcCCChhHHHHHHHHHhh------
Q 037592 15 LGLCGNVVVESSLVDM-YGKCGLVDESHRVFDKMLKK-------NSVSSSALLQGYCQTGDFESVIRIFREMEE------ 80 (337)
Q Consensus 15 ~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------ 80 (337)
.+-.||+..-|..-.. -.+...+++|+.-|+...+. .-.+.-.++..+.+.|++++..+.|.++..
T Consensus 20 s~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAV 99 (440)
T KOG1464|consen 20 SNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAV 99 (440)
T ss_pred cCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 3445666554433221 12445788888888887432 223445678888899999999888888875
Q ss_pred ---cCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhC-CCCch----hHHHHHHHHHhcCCHHHHHHHHhcCCC------
Q 037592 81 ---IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSG-CKDVI----IESALVDLYAKCGCVDFAHQIFLQMPV------ 146 (337)
Q Consensus 81 ---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~------ 146 (337)
-...+.+.++.--+...+.+...++|+.-++.-- ..+.. +-+.|...|...|.+.+..++++++..
T Consensus 100 TrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~ed 179 (440)
T KOG1464|consen 100 TRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTED 179 (440)
T ss_pred hccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhcccc
Confidence 2334567777766677777766666654443210 12222 224577788888888888888777651
Q ss_pred --Cc-------HHhHHHHHHHHHhCCCHhHHHHHHHHHHhc-CCCCCHhHHHHHHHHH-----hhcCchhhHHHHHHHHH
Q 037592 147 --RN-------LITWNSMISGFAQNGRGEEALRIFDDMTEG-GTKPDHVSFIGVLSAC-----SHMGLIDRGRKHFASMT 211 (337)
Q Consensus 147 --~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~l~~~~-----~~~~~~~~a~~~~~~~~ 211 (337)
.| ...|..=|+.|....+-.+-..+|++...- .--|.+.... ++.-| .+.|++++|..-|-++-
T Consensus 180 GedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFFEAF 258 (440)
T KOG1464|consen 180 GEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFFEAF 258 (440)
T ss_pred CchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHHHHHH
Confidence 01 235666778888888777777788776542 1223443333 33333 34577777765444433
Q ss_pred Hhc---CCCCC--HHHHHHHHHHHHhcCC----hHHHHHHHHHhcCCCchhHHHHHHHHHhcCCChhHHHHHHHH
Q 037592 212 KEY---RIKPK--IEHYNCMVDLLGRAGL----LEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKK 277 (337)
Q Consensus 212 ~~~---~~~~~--~~~~~~l~~~~~~~g~----~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 277 (337)
+.+ |.+.. ..-|..|..++.+.|- ..+|. .....|.....+.++.+|... +..+-+++++.
T Consensus 259 KNYDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEAK----PyKNdPEIlAMTnlv~aYQ~N-dI~eFE~Il~~ 328 (440)
T KOG1464|consen 259 KNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAK----PYKNDPEILAMTNLVAAYQNN-DIIEFERILKS 328 (440)
T ss_pred hcccccCCcchhHHHHHHHHHHHHHHcCCCCCcccccC----CCCCCHHHHHHHHHHHHHhcc-cHHHHHHHHHh
Confidence 432 22111 1223444455554431 11110 012334455566666666433 44444444433
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.15 Score=26.15 Aligned_cols=27 Identities=26% Similarity=0.363 Sum_probs=17.3
Q ss_pred hHHHHHHHHHhCCCHhHHHHHHHHHHh
Q 037592 151 TWNSMISGFAQNGRGEEALRIFDDMTE 177 (337)
Q Consensus 151 ~~~~l~~~~~~~~~~~~a~~~~~~m~~ 177 (337)
+|..+..+|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 456666666666777777776666665
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=93.82 E-value=5.6 Score=36.96 Aligned_cols=117 Identities=10% Similarity=0.005 Sum_probs=67.9
Q ss_pred cCchhhHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHhc-CCCchhHHHHHHHHHhcCCChhHHHH
Q 037592 197 MGLIDRGRKHFASMTKEYRIKPKI--EHYNCMVDLLGRAGLLEEAETLIENAD-CRHDSSLWEVLLGACTTFRNAHVAER 273 (337)
Q Consensus 197 ~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~ 273 (337)
..+.+.|...+.......++.+.. .++..+.......+..++|...++... ...+......-+......++++.+..
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~ 333 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNT 333 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHH
Confidence 345577888887764443333332 223334333333333566777776542 22233444444545557778887777
Q ss_pred HHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHH
Q 037592 274 VAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMK 313 (337)
Q Consensus 274 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 313 (337)
.+..+............=++.++...|+.++|..+|++..
T Consensus 334 ~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 334 WLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 7777655333334556666777777888888888887763
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.48 E-value=0.22 Score=25.38 Aligned_cols=30 Identities=13% Similarity=0.217 Sum_probs=25.5
Q ss_pred chHHHHHHHHHHcCChhhHHHHHHHHHHhC
Q 037592 287 LSYVLLDNVYRAVGRWNDAFKIRTLMKYSG 316 (337)
Q Consensus 287 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 316 (337)
..+..++.++...|++++|++.|++..+..
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 467889999999999999999999988754
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.24 E-value=4.8 Score=36.21 Aligned_cols=123 Identities=20% Similarity=0.126 Sum_probs=59.1
Q ss_pred hcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHH
Q 037592 130 KCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFAS 209 (337)
Q Consensus 130 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 209 (337)
-.|+++.|..++-.+.+ ...+.++..+.+.|-.++|+++- ..|+. -| ....+.|+++.|.++..+
T Consensus 598 mrrd~~~a~~vLp~I~k---~~rt~va~Fle~~g~~e~AL~~s-------~D~d~-rF----elal~lgrl~iA~~la~e 662 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPK---EIRTKVAHFLESQGMKEQALELS-------TDPDQ-RF----ELALKLGRLDIAFDLAVE 662 (794)
T ss_pred hhccccccccccccCch---hhhhhHHhHhhhccchHhhhhcC-------CChhh-hh----hhhhhcCcHHHHHHHHHh
Confidence 34555555555444442 22233444444555555554431 22221 11 122355666666665544
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhcCCCchhHHHHHHHHHhcCCChhHHHHHHHHHHh
Q 037592 210 MTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME 280 (337)
Q Consensus 210 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 280 (337)
. .+..-|..|..+....|++..|.+.|.+.. -|..|+-.+...|+-+....+-....+
T Consensus 663 ~-------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~ 720 (794)
T KOG0276|consen 663 A-------NSEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKK 720 (794)
T ss_pred h-------cchHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHh
Confidence 3 234456666666666666666666666532 133444444445554444444444443
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.93 E-value=0.66 Score=36.25 Aligned_cols=78 Identities=9% Similarity=0.070 Sum_probs=37.4
Q ss_pred ChHHHHHHHHH-hcCCCchhH-HHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHH
Q 037592 235 LLEEAETLIEN-ADCRHDSSL-WEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLM 312 (337)
Q Consensus 235 ~~~~A~~~~~~-~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 312 (337)
+++.|...|.+ +.+.|++.+ |..=+.++.+..+++.+..--++++++.|+.......+.........+++|+..+.+.
T Consensus 25 ~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 25 RYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred hhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 34444443332 334444422 2333344444555555555555555555555555555555555555555555555444
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=92.81 E-value=0.56 Score=33.71 Aligned_cols=96 Identities=11% Similarity=0.041 Sum_probs=58.1
Q ss_pred HHHHHHHHH---HhcCChHHHHHHHHHhc-CCCchhHHHHHH-HHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHH
Q 037592 222 HYNCMVDLL---GRAGLLEEAETLIENAD-CRHDSSLWEVLL-GACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296 (337)
Q Consensus 222 ~~~~l~~~~---~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 296 (337)
+.+.|++.. ...++.+++..+++.+. .+|+......+- ..+...|++++|.+++++..+-.|..+..-..+..++
T Consensus 9 iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL 88 (153)
T TIGR02561 9 LLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCL 88 (153)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHH
Confidence 444444433 34788999999998874 455544333332 3377889999999999999887777554444555555
Q ss_pred HHcCChhhHHHHHHHHHHhCCc
Q 037592 297 RAVGRWNDAFKIRTLMKYSGVK 318 (337)
Q Consensus 297 ~~~g~~~~A~~~~~~m~~~~~~ 318 (337)
.-.|+.+- ...-+++.+.|-.
T Consensus 89 ~al~Dp~W-r~~A~~~le~~~~ 109 (153)
T TIGR02561 89 NAKGDAEW-HVHADEVLARDAD 109 (153)
T ss_pred HhcCChHH-HHHHHHHHHhCCC
Confidence 55555332 2223344444443
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.65 E-value=6.7 Score=34.48 Aligned_cols=238 Identities=13% Similarity=0.154 Sum_probs=128.5
Q ss_pred HHHHHHHHHcccC--ChhhHHHHHHHHHcCC------ChhHHHHHHHHHhh------cCcccHHHHHHHHHhhchhhhhH
Q 037592 38 DESHRVFDKMLKK--NSVSSSALLQGYCQTG------DFESVIRIFREMEE------IDLFSFGIVLRACAGLAALRLGK 103 (337)
Q Consensus 38 ~~A~~~~~~~~~~--~~~~~~~l~~~~~~~g------~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~ 103 (337)
+....+|+....+ +..-|+..|..|...- .......+++...+ -....|..+...+...+.. .
T Consensus 299 s~~~~v~ee~v~~l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~---r 375 (568)
T KOG2396|consen 299 SRCCAVYEEAVKTLPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEA---R 375 (568)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchH---h
Confidence 3344777776443 4445666665554322 33444445555444 2223455555555444433 3
Q ss_pred HHHHHHHHhhCCCCchhHHHHHHHHHhcC-CHHH-HHHHHhcCC----CCcHHhHHHHH-HHHHhCCCHhHHHHHHHHHH
Q 037592 104 EVHCQYIRRSGCKDVIIESALVDLYAKCG-CVDF-AHQIFLQMP----VRNLITWNSMI-SGFAQNGRGEEALRIFDDMT 176 (337)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~-A~~~~~~~~----~~~~~~~~~l~-~~~~~~~~~~~a~~~~~~m~ 176 (337)
..-..+...++..+...|..-+....+.. +++- -...|.... .+-...|++.. ..+......+..+..+..+
T Consensus 376 ~~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~~~dsl~~~~~~~Ii~a~~s~- 454 (568)
T KOG2396|consen 376 EVAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASASEGDSLQEDTLDLIISALLSV- 454 (568)
T ss_pred HHHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHhhccchhHHHHHHHHHHHHHh-
Confidence 33333344445566666655555544332 2211 111122222 23334454444 1111111122222222222
Q ss_pred hcCCCCCHhHH-HHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH---hcCChHHHHHHHHHhc--CCC
Q 037592 177 EGGTKPDHVSF-IGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLG---RAGLLEEAETLIENAD--CRH 250 (337)
Q Consensus 177 ~~~~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~--~~~ 250 (337)
..|+..|+ +.++..+-+.|-..+|...+..+... -+|+...|..+++.-. .+| +..++.+|+.+- .-.
T Consensus 455 ---~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l--pp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~ 528 (568)
T KOG2396|consen 455 ---IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL--PPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGA 528 (568)
T ss_pred ---cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC--CCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCC
Confidence 45566655 34567777888889999999988543 3567778888876433 233 777888887641 125
Q ss_pred chhHHHHHHHHHhcCCChhHHHHHHHHHHh-cCCCc
Q 037592 251 DSSLWEVLLGACTTFRNAHVAERVAKKIME-LKPDC 285 (337)
Q Consensus 251 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~p~~ 285 (337)
|+..|--.+.--..+|..+.+-.++.++.+ ++|..
T Consensus 529 d~~lw~~y~~~e~~~g~~en~~~~~~ra~ktl~~~~ 564 (568)
T KOG2396|consen 529 DSDLWMDYMKEELPLGRPENCGQIYWRAMKTLQGES 564 (568)
T ss_pred ChHHHHHHHHhhccCCCcccccHHHHHHHHhhChhh
Confidence 677788888777899999998888877766 66663
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=92.65 E-value=0.28 Score=26.36 Aligned_cols=18 Identities=11% Similarity=-0.021 Sum_probs=6.3
Q ss_pred HHHhcCCChhHHHHHHHH
Q 037592 260 GACTTFRNAHVAERVAKK 277 (337)
Q Consensus 260 ~~~~~~g~~~~a~~~~~~ 277 (337)
..|...|++++|..++++
T Consensus 10 ~~~~~~g~~~~A~~~~~~ 27 (42)
T PF13374_consen 10 NAYRAQGRYEEALELLEE 27 (42)
T ss_dssp HHHHHCT-HHHHHHHHHH
T ss_pred HHHHhhhhcchhhHHHHH
Confidence 333333333333333333
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.63 E-value=0.43 Score=36.18 Aligned_cols=87 Identities=11% Similarity=-0.015 Sum_probs=57.6
Q ss_pred HHHhhchhhhhHHHHHHHHHhhCCCC----chhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHH---hHHHHHHHHHhCCC
Q 037592 92 ACAGLAALRLGKEVHCQYIRRSGCKD----VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLI---TWNSMISGFAQNGR 164 (337)
Q Consensus 92 ~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~ 164 (337)
-+.+.|++++|..-|..++...+... ...|..-..++.+.+.++.|+.-..+....++. +..--..+|.+...
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 35567777777777777777654322 344555566777888888888777766644332 22233456777788
Q ss_pred HhHHHHHHHHHHhc
Q 037592 165 GEEALRIFDDMTEG 178 (337)
Q Consensus 165 ~~~a~~~~~~m~~~ 178 (337)
+++|+.=|.++.+.
T Consensus 184 ~eealeDyKki~E~ 197 (271)
T KOG4234|consen 184 YEEALEDYKKILES 197 (271)
T ss_pred HHHHHHHHHHHHHh
Confidence 88888888888774
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=92.58 E-value=1.2 Score=29.31 Aligned_cols=62 Identities=15% Similarity=0.204 Sum_probs=43.2
Q ss_pred CHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 037592 164 RGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMV 227 (337)
Q Consensus 164 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 227 (337)
+.-++.+-++.+......|+.....+.+.+|.+.+++..|.++++.+..+.| .+...|..++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~l 83 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYIL 83 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHH
Confidence 3445666666777777788888888888888888888888888887733332 2444565554
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=92.58 E-value=3.1 Score=30.52 Aligned_cols=49 Identities=16% Similarity=0.050 Sum_probs=24.6
Q ss_pred HhcCCHHHHHHHHhcCC--CCcHH-hHHHHHHHHHhCCCHhHHHHHHHHHHh
Q 037592 129 AKCGCVDFAHQIFLQMP--VRNLI-TWNSMISGFAQNGRGEEALRIFDDMTE 177 (337)
Q Consensus 129 ~~~g~~~~A~~~~~~~~--~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~ 177 (337)
.+.++.+++..++..+. .|... .-..-...+...|+|.+|+.+|+++..
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 34455666666655554 33222 111222334566666666666666544
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=92.56 E-value=5.1 Score=32.89 Aligned_cols=235 Identities=11% Similarity=-0.028 Sum_probs=146.2
Q ss_pred CCchHhHHHHHHHHHhcCChHHHHHHHHHcccCChhhHHHHHHHHHcCCCh----hHHHHHHHHHh-h-cCcccHHHHHH
Q 037592 18 CGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDF----ESVIRIFREME-E-IDLFSFGIVLR 91 (337)
Q Consensus 18 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~A~~~~~~~~-~-~~~~~~~~l~~ 91 (337)
.+|..+....+..+...|..+....+..-+..+|...-...+.++...|+. .++...+..+. + ++.......+.
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d~~VR~~A~~ 113 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDKSACVRASAIN 113 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 456666677777777777644444444433566777777778888888864 46888888773 3 77666667777
Q ss_pred HHHhhchhhh--hHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCC-CHhHH
Q 037592 92 ACAGLAALRL--GKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNG-RGEEA 168 (337)
Q Consensus 92 ~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a 168 (337)
++...+.... -......+...-..++..+-...+.++.+.|+-+....+..-+..+|...-...+.++...+ +...+
T Consensus 114 aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~ 193 (280)
T PRK09687 114 ATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDI 193 (280)
T ss_pred HHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHH
Confidence 7666543211 11222223222223566777778888888887544444444444667766666666666653 24567
Q ss_pred HHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-c
Q 037592 169 LRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-D 247 (337)
Q Consensus 169 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 247 (337)
...+..+.. .++...-...+.++.+.|+. .|...+-..++. ++ .....+.++...|.. +|...+.++ .
T Consensus 194 ~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~----~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 194 REAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKK----GT--VGDLIIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred HHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcC----Cc--hHHHHHHHHHhcCCH-hHHHHHHHHHh
Confidence 777777764 45666677777888888874 566555555443 22 344677888888885 677777765 3
Q ss_pred CCCchhHHHHHHHHHh
Q 037592 248 CRHDSSLWEVLLGACT 263 (337)
Q Consensus 248 ~~~~~~~~~~l~~~~~ 263 (337)
..||...-...+.++.
T Consensus 263 ~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 263 KFDDNEIITKAIDKLK 278 (280)
T ss_pred hCCChhHHHHHHHHHh
Confidence 4667766555555543
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=92.51 E-value=3 Score=34.50 Aligned_cols=46 Identities=9% Similarity=0.198 Sum_probs=27.0
Q ss_pred chhhHHHHHHHHhcCCCCchHhHHHHHHHHHh--cC----ChHHHHHHHHHc
Q 037592 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGK--CG----LVDESHRVFDKM 47 (337)
Q Consensus 2 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~A~~~~~~~ 47 (337)
+++...+++.+.+.|+.-+..+|-+....... .. ....|..+|+.|
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~m 129 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEM 129 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence 34566777777777777776665543333322 22 234566677776
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=92.36 E-value=3.1 Score=30.03 Aligned_cols=64 Identities=17% Similarity=0.168 Sum_probs=42.3
Q ss_pred HHhcCChHHHHHHHHHc--ccCC-hhhHHHHHHHHHcCCChhHHHHHHHHHhh-cCcccHHHHHHHHH
Q 037592 31 YGKCGLVDESHRVFDKM--LKKN-SVSSSALLQGYCQTGDFESVIRIFREMEE-IDLFSFGIVLRACA 94 (337)
Q Consensus 31 ~~~~~~~~~A~~~~~~~--~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~ 94 (337)
-...++++++..+++.+ ..|+ ...-..-...++..|++.+|+++|+...+ .....|..-+.++|
T Consensus 20 aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~C 87 (153)
T TIGR02561 20 ALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALC 87 (153)
T ss_pred HHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHH
Confidence 34578899999998887 4553 22223334557788999999999999887 33334554444443
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.30 E-value=2.7 Score=37.65 Aligned_cols=133 Identities=12% Similarity=0.092 Sum_probs=82.0
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHcccCChhhHHHHHHHHHcCCChhHHHHHHHHHhhcCcccHHHHHHHHHhhchhhh
Q 037592 22 VVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRL 101 (337)
Q Consensus 22 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 101 (337)
...+.+++.+.+.|-.++|+++- .+|+ . -.....+.|+++.|.++..+. .+..-|..|.++....+++..
T Consensus 615 ~~rt~va~Fle~~g~~e~AL~~s---~D~d--~---rFelal~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~l 684 (794)
T KOG0276|consen 615 EIRTKVAHFLESQGMKEQALELS---TDPD--Q---RFELALKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPL 684 (794)
T ss_pred hhhhhHHhHhhhccchHhhhhcC---CChh--h---hhhhhhhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchh
Confidence 35677778888888888887653 2221 1 123345668888887776654 455668888888888888888
Q ss_pred hHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHH
Q 037592 102 GKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175 (337)
Q Consensus 102 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 175 (337)
|.+.+.+.... ..|+-.+...|+-+....+-..... ....|....+|...|+++++.+++..-
T Consensus 685 A~EC~~~a~d~---------~~LlLl~t~~g~~~~l~~la~~~~~--~g~~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 685 ASECFLRARDL---------GSLLLLYTSSGNAEGLAVLASLAKK--QGKNNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHhhcch---------hhhhhhhhhcCChhHHHHHHHHHHh--hcccchHHHHHHHcCCHHHHHHHHHhc
Confidence 88887666543 3456666666666544433333321 111122234566678888888877543
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=92.15 E-value=0.24 Score=24.95 Aligned_cols=23 Identities=17% Similarity=0.346 Sum_probs=10.3
Q ss_pred HHHHHHHcCChhhHHHHHHHHHH
Q 037592 292 LDNVYRAVGRWNDAFKIRTLMKY 314 (337)
Q Consensus 292 l~~~~~~~g~~~~A~~~~~~m~~ 314 (337)
++.++.+.|++++|.+.|+++.+
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHH
Confidence 34444444444444444444443
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=92.02 E-value=0.084 Score=38.25 Aligned_cols=129 Identities=10% Similarity=0.048 Sum_probs=77.5
Q ss_pred HHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHhH
Q 037592 88 IVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEE 167 (337)
Q Consensus 88 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 167 (337)
.++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++.... .-...++..|.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 35566667778888888888888777666788888899999988887888887774332 333445666667777777
Q ss_pred HHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 037592 168 ALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235 (337)
Q Consensus 168 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 235 (337)
|.-++.++....- .+..+...++++.|.++... .+++..|..++..+...+.
T Consensus 89 a~~Ly~~~~~~~~---------al~i~~~~~~~~~a~e~~~~-------~~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 89 AVYLYSKLGNHDE---------ALEILHKLKDYEEAIEYAKK-------VDDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHHCCTTHTT---------CSSTSSSTHCSCCCTTTGGG-------CSSSHHHHHHHHHHCTSTC
T ss_pred HHHHHHHcccHHH---------HHHHHHHHccHHHHHHHHHh-------cCcHHHHHHHHHHHHhcCc
Confidence 7776665433211 01112344555555532221 2345566666666555443
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=91.81 E-value=2 Score=28.65 Aligned_cols=59 Identities=15% Similarity=0.191 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 037592 167 EALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMV 227 (337)
Q Consensus 167 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 227 (337)
+..+-+..+....+.|+.....+.+.+|.+.+++..|.++++.+..+.|.. ...|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~l 86 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYIL 86 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHH
Confidence 455556666666777888888888888888888888888888874443322 22565554
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=91.79 E-value=4.2 Score=30.24 Aligned_cols=135 Identities=8% Similarity=0.071 Sum_probs=77.8
Q ss_pred HHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc--CChHHHHHHHHHh
Q 037592 169 LRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRA--GLLEEAETLIENA 246 (337)
Q Consensus 169 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~ 246 (337)
.++++.+.+.+++|+...+..++..+.+.|++..-.+++. . ++-+|.......+-.+... .-..-|.+++.++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq----~-~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL 88 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQ----Y-HVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRL 88 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHh----h-cccCCcHHHHHHHHHhHccChHHHHHHHHHHHHh
Confidence 3455666677788888888888888888887655444433 2 3344433333332222211 1144555666666
Q ss_pred cCCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhC
Q 037592 247 DCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSG 316 (337)
Q Consensus 247 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 316 (337)
+.. +..++..+...|++-+|.++.+.....+.- .-..++++-.+.++...-..+++-..+++
T Consensus 89 ~~~-----~~~iievLL~~g~vl~ALr~ar~~~~~~~~---~~~~fLeAA~~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 89 GTA-----YEEIIEVLLSKGQVLEALRYARQYHKVDSV---PARKFLEAAANSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred hhh-----HHHHHHHHHhCCCHHHHHHHHHHcCCcccC---CHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 532 455667778888888888887765332211 12345666666666666566665555544
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=91.74 E-value=0.23 Score=35.89 Aligned_cols=117 Identities=13% Similarity=0.102 Sum_probs=67.6
Q ss_pred hhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHcccCChhhHHHHHHHHHcCCChhHHHHHHHHHhhcC
Q 037592 3 KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEID 82 (337)
Q Consensus 3 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 82 (337)
+....+++.+...+...+....+.++..|++.++.+...++++.. +......++..|.+.|.+++|.-++.++...+
T Consensus 24 ~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~---~~yd~~~~~~~c~~~~l~~~a~~Ly~~~~~~~ 100 (143)
T PF00637_consen 24 EELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS---NNYDLDKALRLCEKHGLYEEAVYLYSKLGNHD 100 (143)
T ss_dssp GGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS---SSS-CTHHHHHHHTTTSHHHHHHHHHCCTTHT
T ss_pred HHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc---cccCHHHHHHHHHhcchHHHHHHHHHHcccHH
Confidence 344556677776654556777788888888887777777777632 22333456666666666666666666554311
Q ss_pred cccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCC
Q 037592 83 LFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGC 133 (337)
Q Consensus 83 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 133 (337)
. .+..+...++++.|.++..+ .++..+|..++..+...+.
T Consensus 101 ~-----al~i~~~~~~~~~a~e~~~~------~~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 101 E-----ALEILHKLKDYEEAIEYAKK------VDDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp T-----CSSTSSSTHCSCCCTTTGGG------CSSSHHHHHHHHHHCTSTC
T ss_pred H-----HHHHHHHHccHHHHHHHHHh------cCcHHHHHHHHHHHHhcCc
Confidence 1 11112334455555533211 2567788888887776654
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=91.56 E-value=0.42 Score=25.63 Aligned_cols=26 Identities=19% Similarity=0.422 Sum_probs=15.6
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHh
Q 037592 54 SSSALLQGYCQTGDFESVIRIFREME 79 (337)
Q Consensus 54 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 79 (337)
+++.|...|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 45666666666666666666666554
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=91.55 E-value=2.8 Score=27.84 Aligned_cols=28 Identities=18% Similarity=0.262 Sum_probs=13.2
Q ss_pred HHHcCCChhHHHHHHHHHhhcCcccHHH
Q 037592 61 GYCQTGDFESVIRIFREMEEIDLFSFGI 88 (337)
Q Consensus 61 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 88 (337)
.+...|++++|..+.+.+.-||...|..
T Consensus 48 SLmNrG~Yq~Al~l~~~~~~pdlepw~A 75 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKLCYPDLEPWLA 75 (115)
T ss_pred HHHccchHHHHHHhcCCCCCchHHHHHH
Confidence 3444555555555554443344444433
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=91.42 E-value=3 Score=31.90 Aligned_cols=21 Identities=14% Similarity=0.173 Sum_probs=8.9
Q ss_pred CHHHHHHHHHHHHhcCChHHH
Q 037592 219 KIEHYNCMVDLLGRAGLLEEA 239 (337)
Q Consensus 219 ~~~~~~~l~~~~~~~g~~~~A 239 (337)
|+..+.+|+..+.+.|+++.|
T Consensus 177 n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 177 NPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CHHHHHHHHHHHHHhcchhhh
Confidence 344444444444444444433
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=91.34 E-value=12 Score=34.70 Aligned_cols=49 Identities=18% Similarity=0.120 Sum_probs=33.6
Q ss_pred HhcCCChhHHHHHHHHHHhc---CCC------ccchHHHHHHHHHHcCChhhHHHHHH
Q 037592 262 CTTFRNAHVAERVAKKIMEL---KPD------CHLSYVLLDNVYRAVGRWNDAFKIRT 310 (337)
Q Consensus 262 ~~~~g~~~~a~~~~~~~~~~---~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (337)
.+-.+++..|....+.+.+. .|. .+..+...+-.+...|+.+.|...|.
T Consensus 371 ~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 371 NFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 34678898999999888863 222 12334444445566799999999997
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.31 E-value=12 Score=34.77 Aligned_cols=126 Identities=14% Similarity=0.187 Sum_probs=68.8
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHcccCChhhHHHHHHHHHcCCChhHHHHHHHHHhh-cCcccHHHHHHHHHhhchhh
Q 037592 22 VVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEE-IDLFSFGIVLRACAGLAALR 100 (337)
Q Consensus 22 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~ 100 (337)
......|..+.-.|++++|-...-.|...+..-|..-+..+...++......++=.-.. .+...|..++..+.. .+..
T Consensus 393 kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~-~~~~ 471 (846)
T KOG2066|consen 393 KVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA-SDVK 471 (846)
T ss_pred HHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhccCCCCCcccCchHHHHHHHHHHH-HHHH
Confidence 45666777777778888887777777666666666666666555554433322211111 222345555555544 2221
Q ss_pred hhHHHHHHH--------------H---HhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcH
Q 037592 101 LGKEVHCQY--------------I---RRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNL 149 (337)
Q Consensus 101 ~a~~~~~~~--------------~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 149 (337)
.-.++.... . +... .+......|+..|...+++.+|..++-....++.
T Consensus 472 ~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~S-e~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 472 GFLELIKEWPGHLYSVLTIISATEPQIKQNS-ESTALLEVLAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred HHHHHHHhCChhhhhhhHHHhhcchHHHhhc-cchhHHHHHHHHHHHccChHHHHHHHHhccChHH
Confidence 111111100 0 0000 1234445588889999999999999888875543
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=91.27 E-value=0.48 Score=23.80 Aligned_cols=30 Identities=13% Similarity=0.117 Sum_probs=25.7
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHhcCCCc
Q 037592 256 EVLLGACTTFRNAHVAERVAKKIMELKPDC 285 (337)
Q Consensus 256 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 285 (337)
-.+..++.+.|++++|.+.|+++++..|++
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 345677888999999999999999999973
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=91.25 E-value=23 Score=37.69 Aligned_cols=66 Identities=8% Similarity=-0.049 Sum_probs=54.4
Q ss_pred chhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCCc
Q 037592 251 DSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVK 318 (337)
Q Consensus 251 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 318 (337)
....|-...+.....|.++.|....-.+.+..+. ..+...+.-+...|+...|+.++++..+....
T Consensus 1669 ~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1669 LGECWLQSARIARLAGHLQRAQNALLNAKESRLP--EIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHhhhhcccc--hHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 3456778888888999999999988888886644 57788888899999999999999998866553
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=91.23 E-value=0.34 Score=23.11 Aligned_cols=23 Identities=17% Similarity=0.154 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHcCChhhHHHHHH
Q 037592 288 SYVLLDNVYRAVGRWNDAFKIRT 310 (337)
Q Consensus 288 ~~~~l~~~~~~~g~~~~A~~~~~ 310 (337)
+...+..++...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 44566777777777777777665
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=91.18 E-value=0.82 Score=37.77 Aligned_cols=53 Identities=13% Similarity=0.042 Sum_probs=31.3
Q ss_pred HHHHcCCChhHHHHHHHHHhh--c-CcccHHHHHHHHHhhchhhhhHHHHHHHHHh
Q 037592 60 QGYCQTGDFESVIRIFREMEE--I-DLFSFGIVLRACAGLAALRLGKEVHCQYIRR 112 (337)
Q Consensus 60 ~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 112 (337)
.-|.++|++++|+.+|..... | +.+++..-..+|.+.+.+..|+.-...++..
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL 160 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL 160 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 345666666666666666555 4 5556666666666666666555555544443
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.09 E-value=3.3 Score=33.46 Aligned_cols=105 Identities=11% Similarity=0.088 Sum_probs=69.9
Q ss_pred cCcccHHHHHHHHHh-----hchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHH
Q 037592 81 IDLFSFGIVLRACAG-----LAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSM 155 (337)
Q Consensus 81 ~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 155 (337)
.|-.+|...+..+.. .+.++-....++.|.+.|+..|..+|+.|++.+=+..-. | ...+...
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfi------------P-~nvfQ~~ 131 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFI------------P-QNVFQKV 131 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccc------------c-HHHHHHH
Confidence 344455555555532 355666777788889999999999999998765432211 1 1112222
Q ss_pred HHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCch
Q 037592 156 ISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLI 200 (337)
Q Consensus 156 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 200 (337)
...|- .+-+-+++++++|...|+.||..+-..+++++.+.+-.
T Consensus 132 F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 132 FLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 22222 23456789999999999999999999999999877653
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=90.76 E-value=2 Score=32.83 Aligned_cols=71 Identities=17% Similarity=0.137 Sum_probs=48.1
Q ss_pred HHhcCChHHHHHHHHHcc-cC---ChhhHHHHHHHHHcCCChhHHHHHHHHHhh-------cCcccHHHHHHHHHhhchh
Q 037592 31 YGKCGLVDESHRVFDKML-KK---NSVSSSALLQGYCQTGDFESVIRIFREMEE-------IDLFSFGIVLRACAGLAAL 99 (337)
Q Consensus 31 ~~~~~~~~~A~~~~~~~~-~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~ 99 (337)
..+.|+ ++|.+.|-.+. .+ ++.....|..-|. ..+.+++..++.+..+ +|+..+..|+..+.+.+++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 344455 45666665552 22 4444555555554 6678888888888877 5667888889999888888
Q ss_pred hhhH
Q 037592 100 RLGK 103 (337)
Q Consensus 100 ~~a~ 103 (337)
+.|-
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 8774
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=90.56 E-value=2.3 Score=34.46 Aligned_cols=64 Identities=11% Similarity=0.079 Sum_probs=52.2
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCCc
Q 037592 255 WEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVK 318 (337)
Q Consensus 255 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 318 (337)
.+.+-.+|.+.++++.|+++.+.+..+.|+++.-+.--+..|.+.|.+..|..-++...+....
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~ 247 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPE 247 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC
Confidence 4445567888899999999999999999998877888888888999999998888888776543
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=90.53 E-value=16 Score=34.67 Aligned_cols=200 Identities=14% Similarity=0.078 Sum_probs=111.2
Q ss_pred HHhcCCHHHHHHHHhcCC----CCcH-------HhHHHHH-HHHHhCCCHhHHHHHHHHHHhcC----CCCCHhHHHHHH
Q 037592 128 YAKCGCVDFAHQIFLQMP----VRNL-------ITWNSMI-SGFAQNGRGEEALRIFDDMTEGG----TKPDHVSFIGVL 191 (337)
Q Consensus 128 ~~~~g~~~~A~~~~~~~~----~~~~-------~~~~~l~-~~~~~~~~~~~a~~~~~~m~~~~----~~p~~~~~~~l~ 191 (337)
.....++++|..++.+.. .|+. ..++.+- ......|++++|.++-+.....= ..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 345678888888877654 2221 2344442 33446788999999888776541 122344555566
Q ss_pred HHHhhcCchhhHHHHHHHHHHhcCCCCCH---HHHHHH--HHHHHhcCChHHHH--HHHHHh-----cCCC----chhHH
Q 037592 192 SACSHMGLIDRGRKHFASMTKEYRIKPKI---EHYNCM--VDLLGRAGLLEEAE--TLIENA-----DCRH----DSSLW 255 (337)
Q Consensus 192 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l--~~~~~~~g~~~~A~--~~~~~~-----~~~~----~~~~~ 255 (337)
.+..-.|++++|..+.....+. .-.-+. ..|..+ ...+...|+...+. ..|... +.+| -..+.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~-a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQM-ARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 6677789999998888776332 112222 223333 23455667433333 223221 2222 22334
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHh----cCCCccc---hHHHHHHHHHHcCChhhHHHHHHHHHHhCCccCCCCcceec
Q 037592 256 EVLLGACTTFRNAHVAERVAKKIME----LKPDCHL---SYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEA 328 (337)
Q Consensus 256 ~~l~~~~~~~g~~~~a~~~~~~~~~----~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ 328 (337)
..+..++.+ .+.+..-.....+ ..|.... .+..|+.++...|+.++|...++++......+.+...|...
T Consensus 584 ~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~ 660 (894)
T COG2909 584 AQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAA 660 (894)
T ss_pred HHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 444455443 3333333333222 3343222 22367788888999999999999998877777666666554
Q ss_pred ccc
Q 037592 329 NSK 331 (337)
Q Consensus 329 ~~~ 331 (337)
...
T Consensus 661 ~~~ 663 (894)
T COG2909 661 AYK 663 (894)
T ss_pred HHH
Confidence 433
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=90.33 E-value=0.8 Score=23.23 Aligned_cols=29 Identities=17% Similarity=0.297 Sum_probs=25.7
Q ss_pred chHHHHHHHHHHcCChhhHHHHHHHHHHh
Q 037592 287 LSYVLLDNVYRAVGRWNDAFKIRTLMKYS 315 (337)
Q Consensus 287 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 315 (337)
.+|..++..|...|++++|...|++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46888999999999999999999998764
|
... |
| >PRK12798 chemotaxis protein; Reviewed | Back alignment and domain information |
|---|
Probab=90.27 E-value=11 Score=32.44 Aligned_cols=185 Identities=14% Similarity=0.162 Sum_probs=113.0
Q ss_pred cCCHHHHHHHHhcCC----CCcHHhHHHHHHH-HHhCCCHhHHHHHHHHHHhcCCCCCH----hHHHHHHHHHhhcCchh
Q 037592 131 CGCVDFAHQIFLQMP----VRNLITWNSMISG-FAQNGRGEEALRIFDDMTEGGTKPDH----VSFIGVLSACSHMGLID 201 (337)
Q Consensus 131 ~g~~~~A~~~~~~~~----~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~~~~~ 201 (337)
.|+-++|.+.+..+. .+....|-.|+.+ .....+..+|+++|+...- ..|.. ....--+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 689999999998887 3345567777655 4456789999999998765 23432 23333444556788888
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHH-HHHHHHHhcC---ChHHHHHHHHHhcCCCchhHHHHHHHHHhcCCChhHHHHHHHH
Q 037592 202 RGRKHFASMTKEYRIKPKIEHYN-CMVDLLGRAG---LLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKK 277 (337)
Q Consensus 202 ~a~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 277 (337)
++..+-.....++...|-..-|. .+...+.+.+ ..+.-..++..|...--...|-.+...-.-.|+.+.|...-++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 88877777766665555543333 2333343333 3344445555554333345677777778888999999888888
Q ss_pred HHhcCCCccchHHHHHHHH-----HHcCChhhHHHHHHHHHHhCCc
Q 037592 278 IMELKPDCHLSYVLLDNVY-----RAVGRWNDAFKIRTLMKYSGVK 318 (337)
Q Consensus 278 ~~~~~p~~~~~~~~l~~~~-----~~~g~~~~A~~~~~~m~~~~~~ 318 (337)
+..+... ...-...+..| .-..+.+++.+.+..+-...+.
T Consensus 283 A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L~ 327 (421)
T PRK12798 283 ALKLADP-DSADAARARLYRGAALVASDDAESALEELSQIDRDKLS 327 (421)
T ss_pred HHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhCC
Confidence 8875433 22222222222 2234566676666665555444
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=90.26 E-value=6.1 Score=29.40 Aligned_cols=48 Identities=13% Similarity=0.088 Sum_probs=33.5
Q ss_pred HHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHcccCChh
Q 037592 6 KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSV 53 (337)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 53 (337)
.+.+..+.+.|++|+...+..+++.+.+.|++.....++..-.-+|..
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk 61 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSK 61 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcH
Confidence 345556666778888888888888888888887777776655444433
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.23 E-value=5.9 Score=32.62 Aligned_cols=99 Identities=12% Similarity=0.082 Sum_probs=70.6
Q ss_pred hCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCC-C------cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHh
Q 037592 113 SGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV-R------NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHV 185 (337)
Q Consensus 113 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 185 (337)
|.+.+..+...++..-....+++.++..+-++.. | +... .+.++.+. .=++++++.++..=++.|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 4445555566666666667788888888877762 2 2111 12233222 346778998888888899999999
Q ss_pred HHHHHHHHHhhcCchhhHHHHHHHHHHh
Q 037592 186 SFIGVLSACSHMGLIDRGRKHFASMTKE 213 (337)
Q Consensus 186 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 213 (337)
++..+++.+.+.+++..|.++...|+.+
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999998888777554
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=90.13 E-value=0.56 Score=22.78 Aligned_cols=22 Identities=23% Similarity=0.173 Sum_probs=8.9
Q ss_pred HHHhcCCChhHHHHHHHHHHhc
Q 037592 260 GACTTFRNAHVAERVAKKIMEL 281 (337)
Q Consensus 260 ~~~~~~g~~~~a~~~~~~~~~~ 281 (337)
..+...|+++.|...+++.++.
T Consensus 9 ~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 9 NAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHhhHHHHHHHHHHHHcc
Confidence 3333344444444444444333
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=90.08 E-value=0.49 Score=27.39 Aligned_cols=32 Identities=19% Similarity=0.250 Sum_probs=25.4
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHhcCCCccch
Q 037592 257 VLLGACTTFRNAHVAERVAKKIMELKPDCHLS 288 (337)
Q Consensus 257 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 288 (337)
.+.-++.+.|+++.|.+..+.+++..|++..+
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 34567899999999999999999999997543
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.06 E-value=1.5 Score=35.40 Aligned_cols=59 Identities=14% Similarity=0.009 Sum_probs=52.4
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHH
Q 037592 256 EVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKY 314 (337)
Q Consensus 256 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 314 (337)
+.....|...|.+.+|.++-++++.++|-+...+..|+..+...|+--.|...++++.+
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 33446689999999999999999999999999999999999999999999988888754
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=90.04 E-value=3.4 Score=36.04 Aligned_cols=116 Identities=10% Similarity=0.085 Sum_probs=58.2
Q ss_pred cCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhc--CCCchhHHHHHHHHHhcCCChhHHHHH
Q 037592 197 MGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENAD--CRHDSSLWEVLLGACTTFRNAHVAERV 274 (337)
Q Consensus 197 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~ 274 (337)
.|++-.|.+-+...++...-.|+.....+ ..+...|.++.+...+.... +.....+...++....+.|+++.|...
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~--~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~ 379 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRS--VIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALST 379 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHH--HHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHH
Confidence 45555554444444444333343333222 22445566666666665431 223344556666666666677777666
Q ss_pred HHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHH
Q 037592 275 AKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKY 314 (337)
Q Consensus 275 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 314 (337)
...|+...-.++.........-...|-++++...|++...
T Consensus 380 a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~ 419 (831)
T PRK15180 380 AEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLL 419 (831)
T ss_pred HHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhc
Confidence 6666653322233332323333444556666666666554
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=89.86 E-value=7.3 Score=29.69 Aligned_cols=89 Identities=11% Similarity=0.029 Sum_probs=49.7
Q ss_pred HHHHhhchhhhhHHHHHHHHHhhCCCC--chhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHh--HHHHHHHHHhCCCHh
Q 037592 91 RACAGLAALRLGKEVHCQYIRRSGCKD--VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLIT--WNSMISGFAQNGRGE 166 (337)
Q Consensus 91 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~ 166 (337)
..+...+++++|...++..+......+ ..+--.|.......|.+++|+.+++....++-.. ...-...+...|+-+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~ 176 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQ 176 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchH
Confidence 345566677777776666654311111 1111234455666677777777776666553322 333345666677777
Q ss_pred HHHHHHHHHHhcC
Q 037592 167 EALRIFDDMTEGG 179 (337)
Q Consensus 167 ~a~~~~~~m~~~~ 179 (337)
+|+.-|++.++.+
T Consensus 177 ~Ar~ay~kAl~~~ 189 (207)
T COG2976 177 EARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHHcc
Confidence 7777777766654
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=89.72 E-value=9.8 Score=31.01 Aligned_cols=113 Identities=10% Similarity=0.098 Sum_probs=61.4
Q ss_pred HhHHHHHHHHHHh-cCCCCCHhHHHHHHHHHhh-cC-chhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 037592 165 GEEALRIFDDMTE-GGTKPDHVSFIGVLSACSH-MG-LIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241 (337)
Q Consensus 165 ~~~a~~~~~~m~~-~~~~p~~~~~~~l~~~~~~-~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 241 (337)
.-+|+++|+..-. ..+--|......+++.... .+ ....-.++.+.+....+..++..+....+..++..+++.+-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 4455555552211 1133355555555554443 11 2222233444444444556666666777777777777777777
Q ss_pred HHHHhc----CCCchhHHHHHHHHHhcCCChhHHHHHHHH
Q 037592 242 LIENAD----CRHDSSLWEVLLGACTTFRNAHVAERVAKK 277 (337)
Q Consensus 242 ~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 277 (337)
+++... ...|...|..+|..-.+.|+..-..++..+
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 776531 233556677777777777776666555544
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=89.55 E-value=12 Score=31.72 Aligned_cols=70 Identities=11% Similarity=0.135 Sum_probs=54.9
Q ss_pred CCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCC----CccchHHHHHHHHHHcCChhhHHHHHHHHHHhCCc
Q 037592 249 RHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKP----DCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVK 318 (337)
Q Consensus 249 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 318 (337)
.....+|..++..+.+.|.++.|...+.++....+ ..+.....-+......|+..+|+..+++.....+.
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~ 216 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLS 216 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh
Confidence 34566788888999999999999999999987442 12456666677888889999999999988874443
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=89.39 E-value=7.5 Score=29.20 Aligned_cols=44 Identities=14% Similarity=0.086 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCCc
Q 037592 268 AHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVK 318 (337)
Q Consensus 268 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 318 (337)
+++|...|+++...+|++ ..|..-++.. .+|-++..++.+++..
T Consensus 96 F~kA~~~FqkAv~~~P~n-e~Y~ksLe~~------~kap~lh~e~~~~~~~ 139 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNN-ELYRKSLEMA------AKAPELHMEIHKQGLG 139 (186)
T ss_dssp HHHHHHHHHHHHHH-TT--HHHHHHHHHH------HTHHHHHHHHHHSSS-
T ss_pred HHHHHHHHHHHHhcCCCc-HHHHHHHHHH------HhhHHHHHHHHHHHhh
Confidence 667777777788899995 6777666554 3466666666555443
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=89.37 E-value=2.9 Score=27.62 Aligned_cols=39 Identities=8% Similarity=0.089 Sum_probs=19.9
Q ss_pred HHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHc
Q 037592 9 HAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKM 47 (337)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 47 (337)
++.+....+-|++.+..+.+.+|.+.+++..|+++|+.+
T Consensus 30 mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~v 68 (103)
T cd00923 30 LNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAI 68 (103)
T ss_pred HHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 334444445555555555555555555555555555544
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=89.34 E-value=2.9 Score=31.29 Aligned_cols=27 Identities=0% Similarity=-0.159 Sum_probs=11.3
Q ss_pred hhhHHHHHHHHhcCCCCchHhHHHHHHH
Q 037592 3 KQGKEVHAKVITLGLCGNVVVESSLVDM 30 (337)
Q Consensus 3 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 30 (337)
+.|.+..+.-...+ +.|...++.-..+
T Consensus 8 E~ark~aea~y~~n-P~DadnL~~WG~A 34 (186)
T PF06552_consen 8 EHARKKAEAAYAKN-PLDADNLTNWGGA 34 (186)
T ss_dssp HHHHHHHHHHHHH--TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-cHhHHHHHHHHHH
Confidence 44555555544443 4444444333333
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=89.31 E-value=1 Score=21.40 Aligned_cols=20 Identities=25% Similarity=0.174 Sum_probs=10.1
Q ss_pred HHHHHHHhcCCHHHHHHHHh
Q 037592 123 ALVDLYAKCGCVDFAHQIFL 142 (337)
Q Consensus 123 ~l~~~~~~~g~~~~A~~~~~ 142 (337)
.+...+...|++++|..+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 34445555555555555443
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=89.20 E-value=3 Score=27.88 Aligned_cols=31 Identities=19% Similarity=0.340 Sum_probs=15.6
Q ss_pred CChhhHHHHHHHHHcCCChhHHHHHHHHHhh
Q 037592 50 KNSVSSSALLQGYCQTGDFESVIRIFREMEE 80 (337)
Q Consensus 50 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 80 (337)
|++....+.+.+|.+.+++..|+++|+-++.
T Consensus 43 P~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 43 PEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4445555555555555555555555555544
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.80 E-value=2.4 Score=32.86 Aligned_cols=72 Identities=14% Similarity=0.021 Sum_probs=52.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHH-hcCCCch-hHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCcc---chHHHHHH
Q 037592 223 YNCMVDLLGRAGLLEEAETLIEN-ADCRHDS-SLWEVLLGACTTFRNAHVAERVAKKIMELKPDCH---LSYVLLDN 294 (337)
Q Consensus 223 ~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~ 294 (337)
.+.-+..+.+.+++.+|+...+. .+.+|+. ..-..++..++-.|++++|..-++-.-++.|+.. ..|..++.
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 34456677888899999998875 5666644 4455677889999999999999988888888853 24444444
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.73 E-value=12 Score=30.60 Aligned_cols=68 Identities=15% Similarity=0.150 Sum_probs=52.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhcCCC---CcHHhHHHHHHHHHhCCCHhHHHHHHHHHHh-----cCCCCCHhHH
Q 037592 120 IESALVDLYAKCGCVDFAHQIFLQMPV---RNLITWNSMISGFAQNGRGEEALRIFDDMTE-----GGTKPDHVSF 187 (337)
Q Consensus 120 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~~ 187 (337)
+++.....|..+|.+.+|.++-++... .+...+..|+..+...|+--.+.+-++++.+ .|+..+...+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 445567789999999999999998873 3667888999999999998888888887754 3666555443
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=88.67 E-value=13 Score=30.88 Aligned_cols=126 Identities=11% Similarity=0.136 Sum_probs=70.3
Q ss_pred hhhhHHHHHHHHHhhCCCCchhHHHHHHHHHh--cC----CHHHHHHHHhcCC-------CCcHHhHHHHHHHHHhCCC-
Q 037592 99 LRLGKEVHCQYIRRSGCKDVIIESALVDLYAK--CG----CVDFAHQIFLQMP-------VRNLITWNSMISGFAQNGR- 164 (337)
Q Consensus 99 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g----~~~~A~~~~~~~~-------~~~~~~~~~l~~~~~~~~~- 164 (337)
+++...+++.+.+.|+..+..++-+....... .. ...+|..+++.|+ .++..++..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34556677888888887766555443222222 12 2456778888887 2233444444432 3333
Q ss_pred ---HhHHHHHHHHHHhcCCCCCHh--HHHHHHHHHhhcCc--hhhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 037592 165 ---GEEALRIFDDMTEGGTKPDHV--SFIGVLSACSHMGL--IDRGRKHFASMTKEYRIKPKIEHYNCMV 227 (337)
Q Consensus 165 ---~~~a~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 227 (337)
.+.+..+|+.+.+.|+..+.. ..+.++..+..... ...+..+++.+ ++.|+++....|..++
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l-~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNAL-KKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHH-HHcCCccccccccHHH
Confidence 355667777777777765443 23333322222222 34677777777 5558888777766554
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=88.55 E-value=0.93 Score=25.02 Aligned_cols=27 Identities=19% Similarity=0.156 Sum_probs=22.6
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHHhCC
Q 037592 291 LLDNVYRAVGRWNDAFKIRTLMKYSGV 317 (337)
Q Consensus 291 ~l~~~~~~~g~~~~A~~~~~~m~~~~~ 317 (337)
.|..+|...|+.+.|.+++++....|-
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~~ 30 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEGD 30 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCC
Confidence 578899999999999999999886544
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=88.26 E-value=2.1 Score=37.28 Aligned_cols=109 Identities=6% Similarity=0.030 Sum_probs=79.3
Q ss_pred hHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHc---ccCChhhHHHHHHHHHcCCChhHHHHHHHHHhh-
Q 037592 5 GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKM---LKKNSVSSSALLQGYCQTGDFESVIRIFREMEE- 80 (337)
Q Consensus 5 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 80 (337)
..++++.+....-.|+.....+ ..+...|+++.+...+... +.....+..+++....+.|++++|..+-+-|..
T Consensus 309 s~~~~~~lr~~~~~p~~i~l~~--~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~ 386 (831)
T PRK15180 309 SQQLFAALRNQQQDPVLIQLRS--VIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSN 386 (831)
T ss_pred HHHHHHHHHhCCCCchhhHHHH--HHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhcc
Confidence 3466666666655666554443 4466789999999888765 444667788999999999999999999999987
Q ss_pred --cCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCC
Q 037592 81 --IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC 115 (337)
Q Consensus 81 --~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 115 (337)
.+...........-+.|-++++...|+++...+++
T Consensus 387 eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 387 EIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred ccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 34444444444456677889999999998877653
|
|
| >PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion) | Back alignment and domain information |
|---|
Probab=88.20 E-value=6.1 Score=26.69 Aligned_cols=12 Identities=17% Similarity=0.517 Sum_probs=5.8
Q ss_pred HHHHcCCChhHH
Q 037592 60 QGYCQTGDFESV 71 (337)
Q Consensus 60 ~~~~~~g~~~~A 71 (337)
..+..+|++++|
T Consensus 48 ~sLmNrG~Yq~A 59 (116)
T PF09477_consen 48 SSLMNRGDYQEA 59 (116)
T ss_dssp HHHHHTT-HHHH
T ss_pred HHHHhhHHHHHH
Confidence 344555555555
|
The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C. |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=88.08 E-value=19 Score=32.08 Aligned_cols=175 Identities=12% Similarity=0.089 Sum_probs=93.8
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHhcCC--CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHH
Q 037592 117 DVIIESALVDLYAKCGCVDFAHQIFLQMP--VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSAC 194 (337)
Q Consensus 117 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 194 (337)
|.....+++..+....++.-+..+..+|. ..+...|..++++|..+ ..++-..+|+++.+..+ +...+..-+..+
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~df--nDvv~~ReLa~~ 141 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF--NDVVIGRELADK 141 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc--hhHHHHHHHHHH
Confidence 44445556666666666666666666655 34555666677777766 55666777777766533 333333333333
Q ss_pred hhcCchhhHHHHHHHHHHhcCCCCC------HHHHHHHHHHHHhcCChHHHHHHHHHh----cCCCchhHHHHHHHHHhc
Q 037592 195 SHMGLIDRGRKHFASMTKEYRIKPK------IEHYNCMVDLLGRAGLLEEAETLIENA----DCRHDSSLWEVLLGACTT 264 (337)
Q Consensus 195 ~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~l~~~~~~ 264 (337)
...++...+..+|..++.+ +-|. ...|..+.... ..+.+....+..++ +..--...+.-+-.-|..
T Consensus 142 yEkik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 142 YEKIKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHhchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 3446666666666666443 1221 12333333211 23444444444432 322233344444455777
Q ss_pred CCChhHHHHHHHHHHhcCCCccchHHHHHHHHHH
Q 037592 265 FRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRA 298 (337)
Q Consensus 265 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 298 (337)
..++.+|++++..+++.+..+..+-..++.-+..
T Consensus 218 ~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd 251 (711)
T COG1747 218 NENWTEAIRILKHILEHDEKDVWARKEIIENLRD 251 (711)
T ss_pred ccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHH
Confidence 7777777777777777665555555555544433
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=88.05 E-value=6 Score=26.39 Aligned_cols=79 Identities=10% Similarity=0.085 Sum_probs=45.6
Q ss_pred hhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHh
Q 037592 98 ALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177 (337)
Q Consensus 98 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 177 (337)
..++|..+-+.+...+- ....+--+-+..+...|++++|..+.+...-||...|.+|.. .+.|-.+++..-+.+|-.
T Consensus 20 cHqEA~tIAdwL~~~~~-~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKGE-SEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 34555555555444321 122222223345666777777777777777777777766654 355666666666666665
Q ss_pred cC
Q 037592 178 GG 179 (337)
Q Consensus 178 ~~ 179 (337)
.|
T Consensus 97 sg 98 (115)
T TIGR02508 97 SG 98 (115)
T ss_pred CC
Confidence 54
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.87 E-value=11 Score=31.21 Aligned_cols=131 Identities=10% Similarity=0.014 Sum_probs=87.4
Q ss_pred HhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHc--------------ccCChhhHHHHHHHHHcCCChhHHHHHHHHH
Q 037592 13 ITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKM--------------LKKNSVSSSALLQGYCQTGDFESVIRIFREM 78 (337)
Q Consensus 13 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 78 (337)
....++|...-|- |.+.|.....|+.-....-.+ ...+..+-..++..--...+++.++.++-++
T Consensus 12 ~~~~l~p~~rr~~-LsS~fs~e~~w~~r~~~~~kla~~g~~~~kkF~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKl 90 (418)
T KOG4570|consen 12 VLPQLSPAGRRYL-LSSAFSDEHKWEAREKEHYKLADLGSLMDKKFERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKL 90 (418)
T ss_pred hhhcCCchhcchh-hHHHhhhhhhhhHHHHHHHHHhcccccchhhhhcCCCcceeehhhhhhccccccchhHHHHHHHHH
Confidence 3355666555443 556666666665433322111 1223444555666666678899999988888
Q ss_pred hh-cCc-----ccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC
Q 037592 79 EE-IDL-----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP 145 (337)
Q Consensus 79 ~~-~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 145 (337)
+. |+. .+-..+++.|. .-+.++++.++..=+..|+.||..+++.+++.+.+.+++.+|.++.-.|.
T Consensus 91 Rhs~~a~~~~~~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 91 RHSPNAWYLRNWTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred hcCcchhhhccccHHHHHHHHH-ccChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 76 332 23334444443 33566888888888899999999999999999999999999998877766
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.55 E-value=13 Score=29.90 Aligned_cols=236 Identities=12% Similarity=0.133 Sum_probs=142.2
Q ss_pred chhhHHHHHHHHhcCCCC---chHhHHHHHHHHHhcCChHHHHHHHHHccc-------C--ChhhHHHHHHHHHcCCChh
Q 037592 2 LKQGKEVHAKVITLGLCG---NVVVESSLVDMYGKCGLVDESHRVFDKMLK-------K--NSVSSSALLQGYCQTGDFE 69 (337)
Q Consensus 2 ~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~--~~~~~~~l~~~~~~~g~~~ 69 (337)
+++|+.-|.+.++..-.. .-.+...++..+.+.|++++....+.++.. + +..+.|+++.--....+.+
T Consensus 43 p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~ 122 (440)
T KOG1464|consen 43 PKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMD 122 (440)
T ss_pred HHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhH
Confidence 578888999988763222 234556778899999999999999988821 1 4556777777666666666
Q ss_pred HHHHHHHHHhh-----cCcc----cHHHHHHHHHhhchhhhhHHHHHHHHHhhCCC-----------CchhHHHHHHHHH
Q 037592 70 SVIRIFREMEE-----IDLF----SFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-----------DVIIESALVDLYA 129 (337)
Q Consensus 70 ~A~~~~~~~~~-----~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~ 129 (337)
.-.++|+.-.. .+.. |-..+...|...+.+.+...+++++....... -..+|..-+..|.
T Consensus 123 LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT 202 (440)
T KOG1464|consen 123 LLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYT 202 (440)
T ss_pred HHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhh
Confidence 55555554433 2222 34567788889999999999999887764322 1356666677888
Q ss_pred hcCCHHHHHHHHhcCC-----CCcHHhHHHHH----HHHHhCCCHhHHHHHHHHH-Hh---cCCCCCHh---HHHHHHHH
Q 037592 130 KCGCVDFAHQIFLQMP-----VRNLITWNSMI----SGFAQNGRGEEALRIFDDM-TE---GGTKPDHV---SFIGVLSA 193 (337)
Q Consensus 130 ~~g~~~~A~~~~~~~~-----~~~~~~~~~l~----~~~~~~~~~~~a~~~~~~m-~~---~~~~p~~~---~~~~l~~~ 193 (337)
...+-.+-..++++.. -|.+.....+- ....+.|++++|..-|-+. +. .| .|-.. -|..+.+.
T Consensus 203 ~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsG-spRRttCLKYLVLANM 281 (440)
T KOG1464|consen 203 EQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESG-SPRRTTCLKYLVLANM 281 (440)
T ss_pred hhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccC-CcchhHHHHHHHHHHH
Confidence 8877777777777665 23333322221 2235678898886544443 32 23 23222 34444455
Q ss_pred HhhcCc--hhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 037592 194 CSHMGL--IDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIEN 245 (337)
Q Consensus 194 ~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 245 (337)
+.+.|- ++. +++ +-+.-.|.....+.|+.+|.. +++.+-++++..
T Consensus 282 LmkS~iNPFDs-----QEA-KPyKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il~~ 328 (440)
T KOG1464|consen 282 LMKSGINPFDS-----QEA-KPYKNDPEILAMTNLVAAYQN-NDIIEFERILKS 328 (440)
T ss_pred HHHcCCCCCcc-----ccc-CCCCCCHHHHHHHHHHHHHhc-ccHHHHHHHHHh
Confidence 554442 111 011 111224556677888888754 456666666653
|
|
| >cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat | Back alignment and domain information |
|---|
Probab=87.03 E-value=4.6 Score=26.11 Aligned_cols=65 Identities=8% Similarity=0.035 Sum_probs=40.1
Q ss_pred hHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHhHH
Q 037592 102 GKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEA 168 (337)
Q Consensus 102 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 168 (337)
+.+++..+++.|+ -+..-...+-.+-...|+.+.|.+++..+. ..+..|..+++++...|.-.-|
T Consensus 21 ~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 4556666666665 333333333222235577777888887777 7777777777777777665544
|
Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei |
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.75 E-value=12 Score=29.66 Aligned_cols=57 Identities=11% Similarity=-0.104 Sum_probs=37.8
Q ss_pred HHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhC
Q 037592 260 GACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSG 316 (337)
Q Consensus 260 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 316 (337)
.++...|++-++++-..+++...|.+..+|..-+.+....=+.++|..-|....+..
T Consensus 238 QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 238 QCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred HHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 344566677777777777777777777777776666666666666666666655533
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=86.43 E-value=1.8 Score=23.88 Aligned_cols=23 Identities=17% Similarity=0.381 Sum_probs=12.3
Q ss_pred HHHHHHhCCCHhHHHHHHHHHHh
Q 037592 155 MISGFAQNGRGEEALRIFDDMTE 177 (337)
Q Consensus 155 l~~~~~~~~~~~~a~~~~~~m~~ 177 (337)
|..+|...|+.+.|.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 44455555555555555555543
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=86.42 E-value=9.1 Score=34.47 Aligned_cols=139 Identities=11% Similarity=-0.043 Sum_probs=89.4
Q ss_pred CCchHhHHHHHHHHHhc--CChHHHHHHHHHcccCChhhHHHH--HHH-HHcCCChhHHHHHHHHHhh----cCcccHHH
Q 037592 18 CGNVVVESSLVDMYGKC--GLVDESHRVFDKMLKKNSVSSSAL--LQG-YCQTGDFESVIRIFREMEE----IDLFSFGI 88 (337)
Q Consensus 18 ~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~l--~~~-~~~~g~~~~A~~~~~~~~~----~~~~~~~~ 88 (337)
.|+..+..+++.-.... ...+.+-.+|..|.+++...|-.| ... +...|+...|..++..... ...+....
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~ 647 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINKPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVN 647 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcCCCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHH
Confidence 45555555554443332 234456667777777766655432 222 3456888888888887765 23345666
Q ss_pred HHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCC---CcHHhHHHHHH
Q 037592 89 VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV---RNLITWNSMIS 157 (337)
Q Consensus 89 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~ 157 (337)
|.....+.|-.-.|-.++.+.+... ...+.++..+.++|....++++|++.|++... .+...-+.|..
T Consensus 648 la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~ 718 (886)
T KOG4507|consen 648 LANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKL 718 (886)
T ss_pred HHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHH
Confidence 7777777777778888888777766 35666777788888888888888888877663 23444444443
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.15 E-value=0.64 Score=38.32 Aligned_cols=88 Identities=17% Similarity=0.240 Sum_probs=56.8
Q ss_pred hcCChHHHHHHHHH-hcCCCc-hhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHH
Q 037592 232 RAGLLEEAETLIEN-ADCRHD-SSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIR 309 (337)
Q Consensus 232 ~~g~~~~A~~~~~~-~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 309 (337)
..|.++.|++.|.. +...|. ...|.--..++.+.+++..|++-+..+.+++|+....|-.-..+..-.|+|++|...+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 45667777776664 233332 2233333455677777777777777777777777666666666777777777777777
Q ss_pred HHHHHhCCcc
Q 037592 310 TLMKYSGVKK 319 (337)
Q Consensus 310 ~~m~~~~~~~ 319 (337)
....+.++.+
T Consensus 206 ~~a~kld~dE 215 (377)
T KOG1308|consen 206 ALACKLDYDE 215 (377)
T ss_pred HHHHhccccH
Confidence 7777766654
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=85.90 E-value=33 Score=32.74 Aligned_cols=219 Identities=12% Similarity=-0.022 Sum_probs=118.1
Q ss_pred HHhhchhhhhHHHHHHHHHhhCCCCch-------hHHHHH-HHHHhcCCHHHHHHHHhcCC--------CCcHHhHHHHH
Q 037592 93 CAGLAALRLGKEVHCQYIRRSGCKDVI-------IESALV-DLYAKCGCVDFAHQIFLQMP--------VRNLITWNSMI 156 (337)
Q Consensus 93 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~l~ 156 (337)
.....++.+|..++.++...-..|+.. .++.|- ......|+.++|.++.+... .+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 355678999999998887764443321 222222 22345688888888776554 23556777788
Q ss_pred HHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHH---HHH--HHHhhcCch--hhHHHHHHHHHHhcCCC-----CCHHHHH
Q 037592 157 SGFAQNGRGEEALRIFDDMTEGGTKPDHVSFI---GVL--SACSHMGLI--DRGRKHFASMTKEYRIK-----PKIEHYN 224 (337)
Q Consensus 157 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~---~l~--~~~~~~~~~--~~a~~~~~~~~~~~~~~-----~~~~~~~ 224 (337)
.+..-.|++++|..+..+..+....-+...+. .+. ..+...|+. .+....+...-...... +-..++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 88888999999999888776542233333332 222 234456633 22333333331111111 1223444
Q ss_pred HHHHHHHh-cCChHHHHHHHHHh---cCCCchhHH--HHHHHHHhcCCChhHHHHHHHHHHh--cCCCccchHHH-----
Q 037592 225 CMVDLLGR-AGLLEEAETLIENA---DCRHDSSLW--EVLLGACTTFRNAHVAERVAKKIME--LKPDCHLSYVL----- 291 (337)
Q Consensus 225 ~l~~~~~~-~g~~~~A~~~~~~~---~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~--~~p~~~~~~~~----- 291 (337)
.+..++.+ .+...++..-++-. ...|-.... ..++......|+.+.|...+.++.. ..+.....|..
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v 664 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKV 664 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHh
Confidence 45555544 11222222222211 111222222 3566888999999999999999887 33321222222
Q ss_pred HHHHHHHcCChhhHHHHHHH
Q 037592 292 LDNVYRAVGRWNDAFKIRTL 311 (337)
Q Consensus 292 l~~~~~~~g~~~~A~~~~~~ 311 (337)
-.......|+.+.+.....+
T Consensus 665 ~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 665 KLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hHHHhcccCCHHHHHHHHHh
Confidence 22234556787777766655
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.86 E-value=6.8 Score=30.48 Aligned_cols=77 Identities=9% Similarity=0.043 Sum_probs=48.5
Q ss_pred HHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHh-cCCCCCHHHHHHHHHH
Q 037592 152 WNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKE-YRIKPKIEHYNCMVDL 229 (337)
Q Consensus 152 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~l~~~ 229 (337)
.+.-++.+.+.+...+++...++-.+..+ .+..+-..++..+|-.|++++|..-++-..+- ....+...+|..++.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakP-tda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKP-TDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCC-ccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 44556777788888888888877766532 24445556678888888888888777766321 0112234555555543
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=85.65 E-value=3.4 Score=27.08 Aligned_cols=53 Identities=13% Similarity=0.053 Sum_probs=31.3
Q ss_pred chhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCc--cchHHHHHHHHHHcCChh
Q 037592 251 DSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDC--HLSYVLLDNVYRAVGRWN 303 (337)
Q Consensus 251 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~ 303 (337)
|...-..+...+...|+++.|++.+-++.+.+|+. ...-..|+..+.-.|.-+
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 33445555666777777777777777777755442 455666777776666644
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=85.22 E-value=33 Score=32.12 Aligned_cols=94 Identities=9% Similarity=-0.111 Sum_probs=51.9
Q ss_pred HHHHHhcCChHHHHHHHHHhcCCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcC---CCccchHHHHHHHHHHcCChh
Q 037592 227 VDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELK---PDCHLSYVLLDNVYRAVGRWN 303 (337)
Q Consensus 227 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~ 303 (337)
+..+...|....|...+..+....+......+.....+.|.++.++.........+ -..+..|...+..+.+.-..+
T Consensus 414 a~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~ 493 (644)
T PRK11619 414 VRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIP 493 (644)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCCC
Confidence 34455667777777777665333444555555566667777777776665443211 011234666666666655566
Q ss_pred hHHHHHHHHHHhCCccC
Q 037592 304 DAFKIRTLMKYSGVKKM 320 (337)
Q Consensus 304 ~A~~~~~~m~~~~~~~~ 320 (337)
.++-.---..++++.|.
T Consensus 494 ~~lv~ai~rqES~f~p~ 510 (644)
T PRK11619 494 QSYAMAIARQESAWNPK 510 (644)
T ss_pred HHHHHHHHHHhcCCCCC
Confidence 55533222335666553
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=85.11 E-value=29 Score=31.40 Aligned_cols=118 Identities=16% Similarity=-0.001 Sum_probs=60.9
Q ss_pred hHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-----cCCCchhHHHHHH
Q 037592 185 VSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-----DCRHDSSLWEVLL 259 (337)
Q Consensus 185 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~~~~~~~~~l~ 259 (337)
.+|...+..-...|+.+.+.-++++.+.- +..-...|-..+.-....|+.+-|..++... +..|......+.
T Consensus 298 ~nw~~yLdf~i~~g~~~~~~~l~ercli~--cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~- 374 (577)
T KOG1258|consen 298 KNWRYYLDFEITLGDFSRVFILFERCLIP--CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR- 374 (577)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHhH--HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH-
Confidence 34555555555666666666666665431 1223344444444444456666666655532 112222211111
Q ss_pred HHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHH
Q 037592 260 GACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAF 306 (337)
Q Consensus 260 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 306 (337)
..-..|+++.|..+++...+-.|+....-..-+....+.|..+.+.
T Consensus 375 -f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 375 -FEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred -HHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence 1344567777777777776644664444444444555566666665
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=84.90 E-value=42 Score=33.02 Aligned_cols=255 Identities=9% Similarity=-0.084 Sum_probs=137.7
Q ss_pred HHHHHHcccCChhhHHHHHHHHHcCCChhHHHHHHHHHhh-cCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCch
Q 037592 41 HRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEE-IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVI 119 (337)
Q Consensus 41 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 119 (337)
..+.+.+.++++.+-...+..+.+.+..+ +...+..+.. +|...-...+.++...+........+..+++. ++..
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d~~ 699 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETTPPG-FGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PDPV 699 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhcchh-HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CCHH
Confidence 34445556777777777777777776544 5555555544 66555555555555544322233344444433 5555
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCc
Q 037592 120 IESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGL 199 (337)
Q Consensus 120 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 199 (337)
+-...+..+...+.- ....+...+..+|...-...+.++...+..+. +.... ..++...-...+.++...+.
T Consensus 700 VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL~~~~~ 771 (897)
T PRK13800 700 VRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGLATLGA 771 (897)
T ss_pred HHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHHHHhcc
Confidence 555666666544321 12344555567777766667777766654432 22222 23455555555666666655
Q ss_pred hhh-HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhcCCCchhHHHHHHHHHhcCCChhHHHHHHHHH
Q 037592 200 IDR-GRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKI 278 (337)
Q Consensus 200 ~~~-a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 278 (337)
.+. +...+..++. .++.......+.++...|..+.+...+...-..++...-...+.++...+. +++...+..+
T Consensus 772 ~~~~~~~~L~~ll~----D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~ 846 (897)
T PRK13800 772 GGAPAGDAVRALTG----DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVEA 846 (897)
T ss_pred ccchhHHHHHHHhc----CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHHH
Confidence 432 3444555533 456777778888888888765554444333233454444455666666654 3444444444
Q ss_pred HhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHH
Q 037592 279 MELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKY 314 (337)
Q Consensus 279 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 314 (337)
++ +|+ ...-...+.++.+.+....+...+....+
T Consensus 847 L~-D~~-~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 847 LT-DPH-LDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred hc-CCC-HHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 42 344 44555556666554333455555554443
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.90 E-value=31 Score=31.61 Aligned_cols=113 Identities=14% Similarity=0.011 Sum_probs=53.8
Q ss_pred cCCChhHHHHHHHHHhh--------cCcccHHHHHHHHHhhc-----hhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHh
Q 037592 64 QTGDFESVIRIFREMEE--------IDLFSFGIVLRACAGLA-----ALRLGKEVHCQYIRRSGCKDVIIESALVDLYAK 130 (337)
Q Consensus 64 ~~g~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 130 (337)
...+++.|+.+|+.+.+ -+.....-+..+|.+.. +...|..++.+..+.|. |+.... +..++..
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~--lg~~~~~ 337 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN-PDAQYL--LGVLYET 337 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC-chHHHH--HHHHHHc
Confidence 44555555555555432 22334444555554432 44556666666666554 333322 2222222
Q ss_pred c---CCHHHHHHHHhcCCC-CcHHhHHHHHHHHH----hCCCHhHHHHHHHHHHhcC
Q 037592 131 C---GCVDFAHQIFLQMPV-RNLITWNSMISGFA----QNGRGEEALRIFDDMTEGG 179 (337)
Q Consensus 131 ~---g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~----~~~~~~~a~~~~~~m~~~~ 179 (337)
. .+..+|.++|...-. -...++-.+..+|. ...+...|..++.+.-+.|
T Consensus 338 g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 338 GTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred CCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 2 245566666665552 22333322332222 2345666777777766665
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.67 E-value=28 Score=30.84 Aligned_cols=104 Identities=15% Similarity=0.046 Sum_probs=73.9
Q ss_pred HHHHhcCCHHHHHHHHhcCC---C------C---cHHhHHHHHHHHHhCCCHhHHHHHHHHHHh-------cCCCCC---
Q 037592 126 DLYAKCGCVDFAHQIFLQMP---V------R---NLITWNSMISGFAQNGRGEEALRIFDDMTE-------GGTKPD--- 183 (337)
Q Consensus 126 ~~~~~~g~~~~A~~~~~~~~---~------~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-------~~~~p~--- 183 (337)
..+.-.|++.+|.+++...- . | ....||.|.-.+.+.|.+.-+..+|.+..+ .|++|.
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 45666799999999887654 1 1 223467777777788888877777777664 455543
Q ss_pred --------HhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 037592 184 --------HVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGR 232 (337)
Q Consensus 184 --------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 232 (337)
..+|+.-+ .+...|++-.|.+.|.+....+ ..++..|..|..+|..
T Consensus 328 tls~nks~eilYNcG~-~~Lh~grPl~AfqCf~~av~vf--h~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 328 TLSQNKSMEILYNCGL-LYLHSGRPLLAFQCFQKAVHVF--HRNPRLWLRLAECCIM 381 (696)
T ss_pred ehhcccchhhHHhhhH-HHHhcCCcHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHH
Confidence 23455444 4667899999999999987754 6788899999888753
|
|
| >smart00386 HAT HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Probab=84.58 E-value=2.3 Score=20.99 Aligned_cols=29 Identities=10% Similarity=0.174 Sum_probs=21.8
Q ss_pred CChhHHHHHHHHHHhcCCCccchHHHHHH
Q 037592 266 RNAHVAERVAKKIMELKPDCHLSYVLLDN 294 (337)
Q Consensus 266 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 294 (337)
|+.+.+..+|+++....|.++..|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 46778888888888888877777766554
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. |
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=84.39 E-value=4.3 Score=25.67 Aligned_cols=19 Identities=11% Similarity=0.081 Sum_probs=8.3
Q ss_pred HHHHHHHHhcCChHHHHHH
Q 037592 224 NCMVDLLGRAGLLEEAETL 242 (337)
Q Consensus 224 ~~l~~~~~~~g~~~~A~~~ 242 (337)
..|+.+|+..|++++++++
T Consensus 47 G~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 47 GYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=84.36 E-value=25 Score=30.11 Aligned_cols=56 Identities=14% Similarity=0.080 Sum_probs=44.6
Q ss_pred HHHHhcCCChhHHHHHHHHHHhcCCC-ccchHHHHHHHH-HHcCChhhHHHHHHHHHH
Q 037592 259 LGACTTFRNAHVAERVAKKIMELKPD-CHLSYVLLDNVY-RAVGRWNDAFKIRTLMKY 314 (337)
Q Consensus 259 ~~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~-~~~g~~~~A~~~~~~m~~ 314 (337)
+..+.+.|-+..|.++.+-+..++|. |+..-..+++.| .++++++--+++.+....
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 46688999999999999999999998 777666666665 566788888888876654
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=84.09 E-value=1.7 Score=27.44 Aligned_cols=46 Identities=13% Similarity=0.065 Sum_probs=32.5
Q ss_pred cCCChhHHHHHHHHHHhcCCCccc---hHHHHHHHHHHcCChhhHHHHH
Q 037592 264 TFRNAHVAERVAKKIMELKPDCHL---SYVLLDNVYRAVGRWNDAFKIR 309 (337)
Q Consensus 264 ~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~ 309 (337)
...+.++|+..|+.+++..++.+. ++..|+.+|+..|++.+++.+-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666778888888888875555333 4556667788888888877653
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat | Back alignment and domain information |
|---|
Probab=83.99 E-value=9.2 Score=24.76 Aligned_cols=66 Identities=15% Similarity=0.157 Sum_probs=38.0
Q ss_pred hHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHcccCChhhHHHHHHHHHcCCChhHHH
Q 037592 5 GKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVI 72 (337)
Q Consensus 5 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 72 (337)
+.++++.+.+.|+- +......+-..-...|+.+.|.++++.+. +.+..|...+.++...|+-.-|.
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 44566666666622 22222322222234577777777777777 66677777777777766655543
|
Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei |
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.14 E-value=33 Score=30.44 Aligned_cols=106 Identities=12% Similarity=-0.038 Sum_probs=66.2
Q ss_pred HhhcCchhhHHHHHHHHH--HhcCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHh----------cCCCc-----
Q 037592 194 CSHMGLIDRGRKHFASMT--KEYRIKPK-----IEHYNCMVDLLGRAGLLEEAETLIENA----------DCRHD----- 251 (337)
Q Consensus 194 ~~~~~~~~~a~~~~~~~~--~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~----------~~~~~----- 251 (337)
+.-.|++.+|.+++...- +..|...+ ...||.|...+.+.|.+.-+..+|.+. +.+|.
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 345688888888775531 11121112 223466666666777776666666542 22221
Q ss_pred --hhHHHHH---HHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHc
Q 037592 252 --SSLWEVL---LGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAV 299 (337)
Q Consensus 252 --~~~~~~l---~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 299 (337)
...+..+ .-.|...|++-.|.+.|.+.......+|..|..|.++|...
T Consensus 330 s~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 330 SQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred hcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 1112222 23477899999999999999997766699999999998764
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=82.66 E-value=6.8 Score=35.23 Aligned_cols=95 Identities=16% Similarity=0.091 Sum_probs=55.6
Q ss_pred cCchhhHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHH-hcC-CCchhHHHHHHHHHhcCCChhHHH
Q 037592 197 MGLIDRGRKHFASMTKEYRIKPK--IEHYNCMVDLLGRAGLLEEAETLIEN-ADC-RHDSSLWEVLLGACTTFRNAHVAE 272 (337)
Q Consensus 197 ~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~-~~~~~~~~~l~~~~~~~g~~~~a~ 272 (337)
.|+...|.+.+..+... .|- ......|.+.+.+.|..-.|-.++.+ +.+ ...+.++..+..++....+++.|+
T Consensus 620 ~gn~~~a~~cl~~a~~~---~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNL---APLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred cCCcHHHHHHHHHHhcc---ChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHH
Confidence 46666666666665432 222 12334455556666666666666553 221 223445556666777777777777
Q ss_pred HHHHHHHhcCCCccchHHHHHH
Q 037592 273 RVAKKIMELKPDCHLSYVLLDN 294 (337)
Q Consensus 273 ~~~~~~~~~~p~~~~~~~~l~~ 294 (337)
+.|+++.+..|+++.+-+.|..
T Consensus 697 ~~~~~a~~~~~~~~~~~~~l~~ 718 (886)
T KOG4507|consen 697 EAFRQALKLTTKCPECENSLKL 718 (886)
T ss_pred HHHHHHHhcCCCChhhHHHHHH
Confidence 7777777777777666555543
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=82.45 E-value=9 Score=31.84 Aligned_cols=90 Identities=13% Similarity=0.062 Sum_probs=67.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHH-hc---CC--CchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHH
Q 037592 223 YNCMVDLLGRAGLLEEAETLIEN-AD---CR--HDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296 (337)
Q Consensus 223 ~~~l~~~~~~~g~~~~A~~~~~~-~~---~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 296 (337)
|.-=+.-|.+.+++..|...|.+ +. .. .+...|+.-..+-...|++..++.-...++.++|.+..+|..=..++
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~ 163 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCL 163 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHH
Confidence 33345567888899999999875 32 11 23445655556667788999999999999999999988988888888
Q ss_pred HHcCChhhHHHHHHHH
Q 037592 297 RAVGRWNDAFKIRTLM 312 (337)
Q Consensus 297 ~~~g~~~~A~~~~~~m 312 (337)
....++++|....++.
T Consensus 164 ~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 164 LELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 8888877777766554
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=82.10 E-value=24 Score=28.07 Aligned_cols=118 Identities=9% Similarity=-0.082 Sum_probs=68.7
Q ss_pred HHhcCCHHHHHHHHhcCC--CCcH-HhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHH-HHHhhcCchhhH
Q 037592 128 YAKCGCVDFAHQIFLQMP--VRNL-ITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVL-SACSHMGLIDRG 203 (337)
Q Consensus 128 ~~~~g~~~~A~~~~~~~~--~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~-~~~~~~~~~~~a 203 (337)
|....+++.|+..+.+.. .|++ .-|+.-+.++.+..+++.+..--.+.++ +.|+.+--..++ .+......++.|
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHH
Confidence 334456667777666655 4444 3456667777777777777766666666 456655433333 444556667777
Q ss_pred HHHHHHHH---HhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhc
Q 037592 204 RKHFASMT---KEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENAD 247 (337)
Q Consensus 204 ~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 247 (337)
+..+.++. +...+++.......|..+--..-...+..++.++..
T Consensus 98 I~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~E 144 (284)
T KOG4642|consen 98 IKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQELE 144 (284)
T ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHhh
Confidence 77777652 222334444555555555555555556666666654
|
|
| >KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=81.83 E-value=13 Score=26.04 Aligned_cols=72 Identities=13% Similarity=0.236 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 037592 167 EALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA 246 (337)
Q Consensus 167 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 246 (337)
+..+-+..+....+.|+.......+.+|.+.+++..|.++++-+ +. .+.+....|-.++ ++..-+++++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~i-K~-K~g~~k~~Y~y~v---------~elkpvl~EL 135 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAI-KD-KCGAQKQVYPYYV---------KELKPVLNEL 135 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHH-HH-hcccHHHHHHHHH---------HHHHHHHHHh
Confidence 34445556666678888888888889999999999999999888 43 3334444455444 3445556666
Q ss_pred cCC
Q 037592 247 DCR 249 (337)
Q Consensus 247 ~~~ 249 (337)
|+.
T Consensus 136 GI~ 138 (149)
T KOG4077|consen 136 GIP 138 (149)
T ss_pred CCC
Confidence 543
|
|
| >PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion) | Back alignment and domain information |
|---|
Probab=81.79 E-value=14 Score=25.11 Aligned_cols=81 Identities=7% Similarity=0.017 Sum_probs=43.9
Q ss_pred hchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHH
Q 037592 96 LAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175 (337)
Q Consensus 96 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 175 (337)
....++|..+.+.+...+. ....+--+-+..+.+.|++++|+..=.....||...|.+|.. .+.|-.+++...+.++
T Consensus 19 ~HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rl 95 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRL 95 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHH
Confidence 3456677777766666543 222233333445667777777744444444667777665544 4667777777777766
Q ss_pred HhcC
Q 037592 176 TEGG 179 (337)
Q Consensus 176 ~~~~ 179 (337)
..+|
T Consensus 96 a~~g 99 (116)
T PF09477_consen 96 ASSG 99 (116)
T ss_dssp CT-S
T ss_pred HhCC
Confidence 5543
|
The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.57 E-value=23 Score=27.67 Aligned_cols=180 Identities=11% Similarity=-0.004 Sum_probs=100.5
Q ss_pred HhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHH---hHHHHHHHHHhCCCHhHHHH
Q 037592 94 AGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLI---TWNSMISGFAQNGRGEEALR 170 (337)
Q Consensus 94 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~ 170 (337)
-..|-+..|.--|.+.+...+ .-+.+||-|.-.+...|+++.|.+.|+...+.|+. +...-.-++.-.|++.-|.+
T Consensus 76 DSlGL~~LAR~DftQaLai~P-~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~ 154 (297)
T COG4785 76 DSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQD 154 (297)
T ss_pred hhhhHHHHHhhhhhhhhhcCC-CcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHH
Confidence 344555556666666665543 34678888888889999999999999988855432 22222233445688888888
Q ss_pred HHHHHHhcCCC-CCHhHHHHHHHHHhhcCchhhHHHHH-HHHHHhcCCCCCHHHHHH-HHHHHHhcCChHHHHHHHHHhc
Q 037592 171 IFDDMTEGGTK-PDHVSFIGVLSACSHMGLIDRGRKHF-ASMTKEYRIKPKIEHYNC-MVDLLGRAGLLEEAETLIENAD 247 (337)
Q Consensus 171 ~~~~m~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~ 247 (337)
-|.+.-+.... |-...|.-+. -..-++.+|..-+ ++. + + .+..-|.. ++..|...=..+.+.+-...-.
T Consensus 155 d~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~-~--~--~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a 226 (297)
T COG4785 155 DLLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRA-E--K--SDKEQWGWNIVEFYLGKISEETLMERLKADA 226 (297)
T ss_pred HHHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHH-H--h--ccHhhhhHHHHHHHHhhccHHHHHHHHHhhc
Confidence 77777665322 2122222222 2334455555433 333 2 2 33334432 2333332222222222222111
Q ss_pred C------CCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcC
Q 037592 248 C------RHDSSLWEVLLGACTTFRNAHVAERVAKKIMELK 282 (337)
Q Consensus 248 ~------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 282 (337)
. ..-..||--+..-+...|+.++|..+|+-++..+
T Consensus 227 ~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 227 TDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 1 0123456667777889999999999999887633
|
|
| >KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=81.00 E-value=26 Score=27.81 Aligned_cols=56 Identities=16% Similarity=0.204 Sum_probs=35.4
Q ss_pred HHhcCCHHHHHHHHhcCC----------------CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCH
Q 037592 128 YAKCGCVDFAHQIFLQMP----------------VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDH 184 (337)
Q Consensus 128 ~~~~g~~~~A~~~~~~~~----------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 184 (337)
+...|++.+|+..++... .|.+.....++..| ..+++++|.+++.++.+.|..|..
T Consensus 202 fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~-~~~~~~~A~~il~~lw~lgysp~D 273 (333)
T KOG0991|consen 202 FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQAC-LKRNIDEALKILAELWKLGYSPED 273 (333)
T ss_pred hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHH-HhccHHHHHHHHHHHHHcCCCHHH
Confidence 455677777776665433 45555555555544 346777777777777777777644
|
|
| >PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710) | Back alignment and domain information |
|---|
Probab=80.67 E-value=37 Score=29.39 Aligned_cols=52 Identities=6% Similarity=-0.013 Sum_probs=27.0
Q ss_pred HHhCCCHhHHHHHHHHHHhcCCCCCHh--HHHHHHHHHh--hcCchhhHHHHHHHHH
Q 037592 159 FAQNGRGEEALRIFDDMTEGGTKPDHV--SFIGVLSACS--HMGLIDRGRKHFASMT 211 (337)
Q Consensus 159 ~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~ 211 (337)
+.+.+++..|.++|+.+... ++++.. .+..+..+|. ..-++++|.+.++...
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~ 196 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLL 196 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 34566666666666666654 343333 2333333333 2445556666666553
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.56 E-value=2.2 Score=37.04 Aligned_cols=95 Identities=9% Similarity=-0.027 Sum_probs=62.8
Q ss_pred HHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHH-HHHHHhcCChHHHHHHHHH-hcCCCch-hHHHHHHHHHhcCCC
Q 037592 191 LSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCM-VDLLGRAGLLEEAETLIEN-ADCRHDS-SLWEVLLGACTTFRN 267 (337)
Q Consensus 191 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~-~~~~~~~-~~~~~l~~~~~~~g~ 267 (337)
+......+.++.|..++.+++ ...||...|.+. ..++.+.+++..|+.=+.+ +...|+- ..|..=..++...+.
T Consensus 11 an~~l~~~~fd~avdlysKaI---~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAI---ELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHH---hcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence 455567788999999999887 446765555332 3677888888888766554 4444432 222222345666777
Q ss_pred hhHHHHHHHHHHhcCCCccch
Q 037592 268 AHVAERVAKKIMELKPDCHLS 288 (337)
Q Consensus 268 ~~~a~~~~~~~~~~~p~~~~~ 288 (337)
+.+|...|+....+.|+++..
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~~ 108 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPDA 108 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHHH
Confidence 888888888888888996433
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.33 E-value=42 Score=29.79 Aligned_cols=122 Identities=11% Similarity=0.072 Sum_probs=74.9
Q ss_pred HHHHHHHcCCChhHHHHHHHHHhh-----cCcc-------cHHHHHHH-HHhhchhhhhHHHHHHHHHhhCCCCchhH--
Q 037592 57 ALLQGYCQTGDFESVIRIFREMEE-----IDLF-------SFGIVLRA-CAGLAALRLGKEVHCQYIRRSGCKDVIIE-- 121 (337)
Q Consensus 57 ~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~-------~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-- 121 (337)
.++-+-.-.|++.+|++-...|.+ |... ....++.. +...+.++.|+.-|....+.--..+...+
T Consensus 328 ~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~n 407 (629)
T KOG2300|consen 328 HIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCN 407 (629)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 334444567999999999999887 4321 12233333 34567788888888777765433343333
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHH--------HHHH--HHhCCCHhHHHHHHHHHHhc
Q 037592 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNS--------MISG--FAQNGRGEEALRIFDDMTEG 178 (337)
Q Consensus 122 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--------l~~~--~~~~~~~~~a~~~~~~m~~~ 178 (337)
..+.-.|.+.|+.+.-.++++.+..++..++.. ++.+ ....+++.+|...+.+-.+.
T Consensus 408 lnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkm 474 (629)
T KOG2300|consen 408 LNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKM 474 (629)
T ss_pred HhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence 235667888888888888888777664433221 1111 23567788888777776553
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 65.6 bits (158), Expect = 7e-12
Identities = 18/136 (13%), Positives = 44/136 (32%), Gaps = 7/136 (5%)
Query: 123 ALVDLYAKCGCVDFAHQIFLQM-------PVRNLITWNSMISGFAQNGRGEEALRIFDDM 175
A + AH + + + L +N+++ G+A+ G +E + + +
Sbjct: 132 AFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMV 191
Query: 176 TEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235
+ G PD +S+ L + + +K + ++ RA +
Sbjct: 192 KDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATV 251
Query: 236 LEEAETLIENADCRHD 251
L+ +
Sbjct: 252 LKAVHKVKPTFSLPPQ 267
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 45.2 bits (105), Expect = 2e-05
Identities = 28/272 (10%), Positives = 67/272 (24%), Gaps = 44/272 (16%)
Query: 26 SLVDMYGKCGLVDESHRVFDKMLKKNSVSSS-------ALLQGYCQTGDFESVIRIFREM 78
+ + +H + + A++ G+ + G F+ ++ + +
Sbjct: 132 AFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMV 191
Query: 79 EEI----DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCV 134
++ DL S+ L+ R IE L
Sbjct: 192 KDAGLTPDLLSYAAALQCMG-----------------RQDQDAGTIERCL---------- 224
Query: 135 DFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSAC 194
Q+ + + ++S + + ++ + P V+ +L
Sbjct: 225 ---EQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDV 281
Query: 195 SHMGLIDRGRKHFASMTKEYRIKP---KIEHYNCMVDLLGRAGLLEEAETLIENADCRHD 251
K + + +E + + + L E +
Sbjct: 282 YAKDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSKEVKHARKTLKTL 341
Query: 252 SSLWEVLLGACTTFRNAHVAERVAKKIMELKP 283
WE L + V + L P
Sbjct: 342 RDQWEKALCRALRETKNRLEREVYEGRFSLYP 373
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 3e-04
Identities = 33/286 (11%), Positives = 91/286 (31%), Gaps = 24/286 (8%)
Query: 44 FDKMLKKNSVSSSALLQG--YCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLA---- 97
+K+L + A YC TGD+ + + + + S L A +
Sbjct: 107 GEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDW 166
Query: 98 --ALRLGKEVHCQYIRRSGCKDVIIESALVDL-----------YAKCGCVDFAHQIF--- 141
AL L E + ++++ + L Y D A + +
Sbjct: 167 QGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEA 226
Query: 142 LQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLID 201
L + + ++ ++S E L + + + + + + D
Sbjct: 227 LMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHED 286
Query: 202 RGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA--DCRHDSSLWEVLL 259
R+ ++ ++ + C D L + + ++ ++ + L
Sbjct: 287 ELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHL 346
Query: 260 GACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDA 305
+ + ++ +++ P+ ++++ + Y V + ++A
Sbjct: 347 ASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEA 392
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 40.9 bits (95), Expect = 5e-04
Identities = 29/159 (18%), Positives = 56/159 (35%), Gaps = 15/159 (9%)
Query: 152 WNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMT 211
N++ + + G EEA+R++ E P+ + A S++ + + +
Sbjct: 12 LNNLANIKREQGNIEEAVRLYRKALE--VFPEFAA------AHSNLASVLQQQGKLQEAL 63
Query: 212 KEYR----IKPK-IEHYNCMVDLLGRAGLLEEAETLIENA-DCRHDSSLWEVLLG-ACTT 264
Y+ I P + Y+ M + L ++ A A + L
Sbjct: 64 MHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKD 123
Query: 265 FRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWN 303
N A + ++LKPD +Y L + + V W
Sbjct: 124 SGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 39.8 bits (94), Expect = 8e-04
Identities = 29/153 (18%), Positives = 52/153 (33%), Gaps = 17/153 (11%)
Query: 161 QNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHF----ASMTKEYRI 216
Q G E A R + +PD+ + I + T +
Sbjct: 11 QAGDFEAAERHCMQLWR--QEPDNTG------VLLLLSSIHFQCRRLDRSAHFSTLAIKQ 62
Query: 217 KPKI-EHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVL--LGAC-TTFRNAHVAE 272
P + E Y+ + ++ G L+EA +A R + L A + A
Sbjct: 63 NPLLAEAYSNLGNVYKERGQLQEAIEHYRHA-LRLKPDFIDGYINLAAALVAAGDMEGAV 121
Query: 273 RVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDA 305
+ ++ PD + L N+ +A+GR +A
Sbjct: 122 QAYVSALQYNPDLYCVRSDLGNLLKALGRLEEA 154
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 337 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.98 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.96 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.95 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.94 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.94 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.93 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.93 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.93 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.93 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.91 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.91 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.9 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.89 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.89 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.89 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.88 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.88 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.86 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.86 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.86 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.85 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.85 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.84 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.83 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.81 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.81 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.8 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.8 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.8 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.79 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.78 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.78 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.78 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.78 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.77 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.77 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.76 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.76 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.76 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.75 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.75 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.75 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.75 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.75 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.74 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.74 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.74 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.74 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.74 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.74 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.73 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.73 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.73 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.73 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.72 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.71 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.7 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.69 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.69 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.68 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.67 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.67 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.65 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.64 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.63 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.63 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.63 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.61 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.6 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.59 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.59 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.56 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.55 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.55 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.55 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.54 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.5 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.5 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.49 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.48 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.41 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.41 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.4 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.4 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.38 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.37 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.36 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.33 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.31 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.31 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.31 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.3 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.3 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.27 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.27 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.27 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.27 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.26 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.24 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.24 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.24 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.23 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.23 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.22 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.22 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.22 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.21 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.2 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.18 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.12 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.12 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.11 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.09 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.09 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.09 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.09 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.06 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.05 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.04 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.04 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.03 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.0 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.0 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.0 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.0 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.99 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.98 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.98 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.97 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.97 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.97 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.95 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.91 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.91 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.91 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.9 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.9 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.9 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.9 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.88 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.88 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.87 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.86 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.85 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.85 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.84 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.84 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.83 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.83 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.83 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.82 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.81 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.81 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.81 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.81 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.8 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.79 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.79 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.78 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.78 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.76 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.75 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.74 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.73 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.71 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.71 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.7 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.7 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.67 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.67 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.66 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.63 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.62 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.6 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.6 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.6 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.59 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.59 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.58 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.58 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.57 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.55 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.5 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.49 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.49 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.48 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.44 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.41 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.4 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.32 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.28 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.27 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.26 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.22 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.21 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.21 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.15 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.1 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.09 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.08 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.07 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.0 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.97 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.96 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.79 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.73 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.71 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.64 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.63 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.63 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.54 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 97.5 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.5 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 97.41 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.36 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.35 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 97.34 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 97.24 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.22 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.14 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 97.14 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.05 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.92 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.8 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.66 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.64 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 96.32 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.26 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 96.0 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.75 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 95.63 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.57 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 95.51 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 95.47 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 95.39 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 95.37 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.24 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.54 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 94.51 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 94.35 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 94.27 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 94.12 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 93.88 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 93.67 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 93.63 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 93.38 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 93.35 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 93.25 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 93.17 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 92.98 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 92.6 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 92.53 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 92.33 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 91.77 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 91.14 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 91.01 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 90.71 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 90.61 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 90.54 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 89.23 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 88.69 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 88.64 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 88.41 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 88.34 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 88.28 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 88.23 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 87.94 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 87.29 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 86.7 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 85.93 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 85.7 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 85.44 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 84.15 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-33 Score=249.73 Aligned_cols=321 Identities=11% Similarity=0.014 Sum_probs=281.1
Q ss_pred CchhhHHHHHHHHhcCCCCchHhHHH--------------------------------------HHHHHHhcCChHHHHH
Q 037592 1 RLKQGKEVHAKVITLGLCGNVVVESS--------------------------------------LVDMYGKCGLVDESHR 42 (337)
Q Consensus 1 ~~~~a~~~~~~~~~~~~~~~~~~~~~--------------------------------------l~~~~~~~~~~~~A~~ 42 (337)
++++|.++|+.|.+.+ +.+...+.. ++..|.+.|++++|.+
T Consensus 215 ~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 293 (597)
T 2xpi_A 215 NFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAED 293 (597)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHH
Confidence 4678999999999875 223333332 3556678899999999
Q ss_pred HHHHccc--CChhhHHHHHHHHHcCCChhHHHHHHHHHhh---cCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCC
Q 037592 43 VFDKMLK--KNSVSSSALLQGYCQTGDFESVIRIFREMEE---IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD 117 (337)
Q Consensus 43 ~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 117 (337)
+|+++.. ++..+|+.++.+|.+.|++++|+++|+++.+ .+..++..++.++.+.|++++|..+++++.+..+ .+
T Consensus 294 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~ 372 (597)
T 2xpi_A 294 YLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHP-EK 372 (597)
T ss_dssp HHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TS
T ss_pred HHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCc-cc
Confidence 9999966 7899999999999999999999999999987 4677899999999999999999999999997654 67
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHH
Q 037592 118 VIIESALVDLYAKCGCVDFAHQIFLQMP---VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSAC 194 (337)
Q Consensus 118 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 194 (337)
..+++.++.+|.+.|++++|.++|+++. +.+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.+|
T Consensus 373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 451 (597)
T 2xpi_A 373 AVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQH 451 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 8999999999999999999999999886 4568899999999999999999999999999864 34778899999999
Q ss_pred hhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-------cCCCc--hhHHHHHHHHHhcC
Q 037592 195 SHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-------DCRHD--SSLWEVLLGACTTF 265 (337)
Q Consensus 195 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~--~~~~~~l~~~~~~~ 265 (337)
.+.|++++|.++|+++++.. +.+..+|+.++..|.+.|++++|.++|+++ +..|+ ..+|..++.+|.+.
T Consensus 452 ~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~ 529 (597)
T 2xpi_A 452 MQLGNILLANEYLQSSYALF--QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKL 529 (597)
T ss_dssp HHHTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHh
Confidence 99999999999999997643 557899999999999999999999999975 44677 67899999999999
Q ss_pred CChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCCccCCCCcceec
Q 037592 266 RNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEA 328 (337)
Q Consensus 266 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ 328 (337)
|++++|++.++++.+..|+++.+|..++.+|.+.|++++|.+.|+++.+.. |+....|..+
T Consensus 530 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~l 590 (597)
T 2xpi_A 530 KMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAIS--PNEIMASDLL 590 (597)
T ss_dssp TCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCChHHHHHH
Confidence 999999999999999999989999999999999999999999999999854 3333444433
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-31 Score=242.02 Aligned_cols=310 Identities=13% Similarity=0.013 Sum_probs=204.0
Q ss_pred CchhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHc--ccCChhhHHHHHHHHHcCCChhHHHHHHHHH
Q 037592 1 RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKM--LKKNSVSSSALLQGYCQTGDFESVIRIFREM 78 (337)
Q Consensus 1 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 78 (337)
++++|..+|+.+.+. .|+..++..++.+|.+.|++++|..+|+.+ ..++..+++.++.+|.+.|++++|+++|+++
T Consensus 99 ~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 176 (597)
T 2xpi_A 99 QYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGET 176 (597)
T ss_dssp CHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSS
T ss_pred CchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhcc
Confidence 356677777777754 466677777777777777777777777777 4556777777777777777777777777743
Q ss_pred hhc-------------------CcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHH---------------
Q 037592 79 EEI-------------------DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESAL--------------- 124 (337)
Q Consensus 79 ~~~-------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------- 124 (337)
... +..+|..++.+|.+.|++++|.++|+++++.++ .+...+..+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~~~~ 255 (597)
T 2xpi_A 177 NPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA-KCYEAFDQLVSNHLLTADEEWDLV 255 (597)
T ss_dssp CTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTCSCHHHHHHHH
T ss_pred CCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-hhhHHHHHHHHhhcccchhHHHHH
Confidence 321 245677777777777777777777777776543 222222211
Q ss_pred -----------------------HHHHHhcCCHHHHHHHHhcCCC--CcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcC
Q 037592 125 -----------------------VDLYAKCGCVDFAHQIFLQMPV--RNLITWNSMISGFAQNGRGEEALRIFDDMTEGG 179 (337)
Q Consensus 125 -----------------------~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 179 (337)
+..|.+.|++++|.++|+++.. ++..+|+.++.+|.+.|++++|..+|+++.+.+
T Consensus 256 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 335 (597)
T 2xpi_A 256 LKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID 335 (597)
T ss_dssp HHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC
Confidence 2333445555566666655553 455555555555555666666655555555432
Q ss_pred C---------------------------------CCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHH
Q 037592 180 T---------------------------------KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCM 226 (337)
Q Consensus 180 ~---------------------------------~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 226 (337)
. +.+..++..++..|.+.|++++|.++|+++++.. +.+..+|+.+
T Consensus 336 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l 413 (597)
T 2xpi_A 336 PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD--PQFGPAWIGF 413 (597)
T ss_dssp TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHH
Confidence 1 2345566666677777777777777777775431 3446677777
Q ss_pred HHHHHhcCChHHHHHHHHHh-c-CCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhh
Q 037592 227 VDLLGRAGLLEEAETLIENA-D-CRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWND 304 (337)
Q Consensus 227 ~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 304 (337)
+.+|.+.|++++|.++|+++ . .+++..+|..++.+|.+.|++++|+++|+++.+..|+++.+|..++.+|.+.|++++
T Consensus 414 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 493 (597)
T 2xpi_A 414 AHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQT 493 (597)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHH
Confidence 77777777777777777764 2 233566777777777777777777777777777777777777777777777777778
Q ss_pred HHHHHHHHHHh
Q 037592 305 AFKIRTLMKYS 315 (337)
Q Consensus 305 A~~~~~~m~~~ 315 (337)
|.++|+++.+.
T Consensus 494 A~~~~~~~~~~ 504 (597)
T 2xpi_A 494 AINHFQNALLL 504 (597)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 87777777765
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=9.6e-29 Score=211.17 Aligned_cols=307 Identities=16% Similarity=0.113 Sum_probs=203.8
Q ss_pred hhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHcc--cC-ChhhHHHHHHHHHcCCChhHHHHHHHHHh
Q 037592 3 KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKML--KK-NSVSSSALLQGYCQTGDFESVIRIFREME 79 (337)
Q Consensus 3 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 79 (337)
++|...++..++.. +.+..+|..+...+.+.|++++|+..|+++. .| +..+|..++.++...|++++|++.|+++.
T Consensus 50 ~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 128 (388)
T 1w3b_A 50 DRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSAL 128 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44444444444432 3344555555555555666666666555552 22 33445555555666666666666665555
Q ss_pred h--cCcc-cHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhHH
Q 037592 80 E--IDLF-SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP---VRNLITWN 153 (337)
Q Consensus 80 ~--~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~ 153 (337)
+ |+.. .+..+...+...|++++|...|+++++..+ .+..++..+..++.+.|++++|+..|+++. +.+...|.
T Consensus 129 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 207 (388)
T 1w3b_A 129 QYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYI 207 (388)
T ss_dssp HHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 5 3332 344445555556666666666666665533 345556666666666666666666666654 22345566
Q ss_pred HHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 037592 154 SMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRA 233 (337)
Q Consensus 154 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 233 (337)
.+...+...|++++|...|++..+... .+..++..+...+...|++++|...++++++.. +.++.++..++..+.+.
T Consensus 208 ~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~ 284 (388)
T 1w3b_A 208 NLGNVLKEARIFDRAVAAYLRALSLSP-NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ--PHFPDAYCNLANALKEK 284 (388)
T ss_dssp HHHHHHHTTTCTTHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHc
Confidence 666666666677777777666665421 245667777788888888888888888886532 34567788888888888
Q ss_pred CChHHHHHHHHHh-c-CCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHH
Q 037592 234 GLLEEAETLIENA-D-CRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTL 311 (337)
Q Consensus 234 g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (337)
|++++|.+.|+++ . .+++..++..+...+.+.|++++|+..++++.+..|++..++..++.++.+.|++++|...|++
T Consensus 285 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 364 (388)
T 1w3b_A 285 GSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 364 (388)
T ss_dssp SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8888888888874 2 3456677888888888889999999999988888888888888888888889999999999888
Q ss_pred HHH
Q 037592 312 MKY 314 (337)
Q Consensus 312 m~~ 314 (337)
+.+
T Consensus 365 a~~ 367 (388)
T 1w3b_A 365 AIR 367 (388)
T ss_dssp HHT
T ss_pred HHh
Confidence 876
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=5.3e-31 Score=229.85 Aligned_cols=206 Identities=15% Similarity=0.168 Sum_probs=157.0
Q ss_pred hHHHHHHHHhcCCCCch-HhHHHHHHHHHhcCChHHHHHHHHHc----ccCChhhHHHHHHHHHcCCChhHHHHHHHHHh
Q 037592 5 GKEVHAKVITLGLCGNV-VVESSLVDMYGKCGLVDESHRVFDKM----LKKNSVSSSALLQGYCQTGDFESVIRIFREME 79 (337)
Q Consensus 5 a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 79 (337)
+..+.+.+.+.+..+++ ..++.+|++|++.|++++|.++|++| ..||..+||+||.+|++.+...++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~-------- 80 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES-------- 80 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS--------
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh--------
Confidence 34445555555544333 34566666666666666666666666 455666666666666665543321
Q ss_pred hcCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC----CCcHHhHHHH
Q 037592 80 EIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP----VRNLITWNSM 155 (337)
Q Consensus 80 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l 155 (337)
...+.+++|.++|++|...|+.||..+|++++.+|++.|++++|.++|++|. .||..+|+++
T Consensus 81 --------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~l 146 (501)
T 4g26_A 81 --------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPA 146 (501)
T ss_dssp --------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred --------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHH
Confidence 1345577888999999999999999999999999999999999999999987 6899999999
Q ss_pred HHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 037592 156 ISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRA 233 (337)
Q Consensus 156 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 233 (337)
|.+|++.|++++|.++|++|.+.|+.||..||++++.+|++.|+.++|.+++++| ++.+..|+..||+.++..|+..
T Consensus 147 I~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~M-r~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 147 LFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRL-RDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHH-HHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999 6669999999999999888753
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=5.6e-28 Score=206.40 Aligned_cols=310 Identities=14% Similarity=0.094 Sum_probs=272.3
Q ss_pred CchhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHcc---cCChhhHHHHHHHHHcCCChhHHHHHHHH
Q 037592 1 RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKML---KKNSVSSSALLQGYCQTGDFESVIRIFRE 77 (337)
Q Consensus 1 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 77 (337)
++++|.+.++.+.+.. +.+...+..+...+...|++++|...++... +.+..+|..++.++.+.|++++|++.|++
T Consensus 14 ~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 92 (388)
T 1w3b_A 14 DFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRH 92 (388)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5789999999998874 4456677778889999999999999998873 23677899999999999999999999999
Q ss_pred Hhh--cCc-ccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHh
Q 037592 78 MEE--IDL-FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP---VRNLIT 151 (337)
Q Consensus 78 ~~~--~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~ 151 (337)
+.+ |+. .+|..+..++...|++++|...++++++..+ .+...+..+...+...|++++|.+.|+++. +.+..+
T Consensus 93 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 171 (388)
T 1w3b_A 93 ALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVA 171 (388)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Confidence 988 554 4688999999999999999999999998865 567778889999999999999999999887 345789
Q ss_pred HHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 037592 152 WNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLG 231 (337)
Q Consensus 152 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 231 (337)
|..+...+...|++++|...|+++.+.+. .+...+..+...+...|++++|...+++++... +.+..++..++.+|.
T Consensus 172 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~ 248 (388)
T 1w3b_A 172 WSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLS--PNHAVVHGNLACVYY 248 (388)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cCCHHHHHHHHHHHH
Confidence 99999999999999999999999998643 256678888899999999999999999997542 445788999999999
Q ss_pred hcCChHHHHHHHHHh-cCCC-chhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHH
Q 037592 232 RAGLLEEAETLIENA-DCRH-DSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIR 309 (337)
Q Consensus 232 ~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 309 (337)
..|++++|.+.|+++ ...| +..+|..+..++.+.|++++|+..++++.+..|+++.++..++.++.+.|++++|...+
T Consensus 249 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 328 (388)
T 1w3b_A 249 EQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLY 328 (388)
T ss_dssp HTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999985 3444 46678899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHh
Q 037592 310 TLMKYS 315 (337)
Q Consensus 310 ~~m~~~ 315 (337)
+++.+.
T Consensus 329 ~~al~~ 334 (388)
T 1w3b_A 329 RKALEV 334 (388)
T ss_dssp HHHTTS
T ss_pred HHHHhc
Confidence 998764
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-30 Score=225.94 Aligned_cols=181 Identities=14% Similarity=0.072 Sum_probs=167.3
Q ss_pred ccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCC---------HHHHHHHHhcCC----CCcHH
Q 037592 84 FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGC---------VDFAHQIFLQMP----VRNLI 150 (337)
Q Consensus 84 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---------~~~A~~~~~~~~----~~~~~ 150 (337)
..++.+|.+|++.|++++|.++|++|.+.|+.||..+|+.|+.+|++.+. +++|.++|++|. .||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 35777888888999999999999999999999999999999999987665 688999999997 78999
Q ss_pred hHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 037592 151 TWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLL 230 (337)
Q Consensus 151 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 230 (337)
+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|. ..|+.||..+|+.|+.+|
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~-~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV-ESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH-hcCCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999994 559999999999999999
Q ss_pred HhcCChHHHHHHHHHh---cCCCchhHHHHHHHHHhcC
Q 037592 231 GRAGLLEEAETLIENA---DCRHDSSLWEVLLGACTTF 265 (337)
Q Consensus 231 ~~~g~~~~A~~~~~~~---~~~~~~~~~~~l~~~~~~~ 265 (337)
++.|++++|.++|++| +..|+..||+.++..|...
T Consensus 186 ~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999987 6899999999999887653
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.1e-26 Score=199.31 Aligned_cols=305 Identities=10% Similarity=0.030 Sum_probs=251.7
Q ss_pred HHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHccc---CChhhHHHHHHHHHcCCChhHHHHHHHHHhh--
Q 037592 6 KEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLK---KNSVSSSALLQGYCQTGDFESVIRIFREMEE-- 80 (337)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 80 (337)
...+....... +.+...+..++..+.+.|++++|+.+|+++.. .+..+|..++.++...|++++|+..|+++.+
T Consensus 12 ~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 90 (450)
T 2y4t_A 12 DLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK 90 (450)
T ss_dssp ------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 34444555443 55678899999999999999999999999843 3678899999999999999999999999998
Q ss_pred c-CcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCc---hhHHHH------------HHHHHhcCCHHHHHHHHhcC
Q 037592 81 I-DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV---IIESAL------------VDLYAKCGCVDFAHQIFLQM 144 (337)
Q Consensus 81 ~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~g~~~~A~~~~~~~ 144 (337)
| +..++..+..++...|++++|...++++++..+ .+. ..+..+ ...+...|++++|+..|+++
T Consensus 91 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 169 (450)
T 2y4t_A 91 MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP-SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKI 169 (450)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4 355788899999999999999999999998654 334 555555 44589999999999999988
Q ss_pred C---CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHH
Q 037592 145 P---VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIE 221 (337)
Q Consensus 145 ~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 221 (337)
. +.+..++..++.+|...|++++|...|+++.+.. +.+..++..+...+...|++++|...++.++... +.+..
T Consensus 170 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~ 246 (450)
T 2y4t_A 170 LEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKR 246 (450)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHH
T ss_pred HHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CChHH
Confidence 6 4577889999999999999999999999998763 3467888899999999999999999999997542 33444
Q ss_pred HHHHH------------HHHHHhcCChHHHHHHHHHh-cCCCc-----hhHHHHHHHHHhcCCChhHHHHHHHHHHhcCC
Q 037592 222 HYNCM------------VDLLGRAGLLEEAETLIENA-DCRHD-----SSLWEVLLGACTTFRNAHVAERVAKKIMELKP 283 (337)
Q Consensus 222 ~~~~l------------~~~~~~~g~~~~A~~~~~~~-~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 283 (337)
.+..+ +..+...|++++|...|+++ ...|+ ...+..+..++.+.|++++|+..++++.+..|
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p 326 (450)
T 2y4t_A 247 CFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEP 326 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 55444 78899999999999999975 33444 34677888999999999999999999999999
Q ss_pred CccchHHHHHHHHHHcCChhhHHHHHHHHHHh
Q 037592 284 DCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYS 315 (337)
Q Consensus 284 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 315 (337)
+++.+|..++.+|...|++++|...++++.+.
T Consensus 327 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 327 DNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999874
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.6e-25 Score=193.45 Aligned_cols=305 Identities=10% Similarity=0.030 Sum_probs=257.3
Q ss_pred CchhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHccc--C-ChhhHHHHHHHHHcCCChhHHHHHHHH
Q 037592 1 RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLK--K-NSVSSSALLQGYCQTGDFESVIRIFRE 77 (337)
Q Consensus 1 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 77 (337)
++++|..+|+.+++.. +.+..++..++.++...|++++|+..|+++.. | +..++..++.+|...|++++|.++|++
T Consensus 41 ~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 119 (450)
T 2y4t_A 41 QLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKK 119 (450)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4688999999999874 55788999999999999999999999999843 3 577899999999999999999999999
Q ss_pred Hhh--cCc----ccHHHH------------HHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHH
Q 037592 78 MEE--IDL----FSFGIV------------LRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQ 139 (337)
Q Consensus 78 ~~~--~~~----~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 139 (337)
+.+ |+. ..+..+ ...+...|++++|...++++++..+ .+..++..++.+|.+.|++++|+.
T Consensus 120 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~ 198 (450)
T 2y4t_A 120 VLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV-WDAELRELRAECFIKEGEPRKAIS 198 (450)
T ss_dssp HHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCGGGGHH
T ss_pred HHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHH
Confidence 998 443 344444 4458899999999999999998765 678889999999999999999999
Q ss_pred HHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCC-HhHHHHH------------HHHHhhcCchhhH
Q 037592 140 IFLQMP---VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPD-HVSFIGV------------LSACSHMGLIDRG 203 (337)
Q Consensus 140 ~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l------------~~~~~~~~~~~~a 203 (337)
.|+++. +.+..+|..++..|...|++++|+..|+++.+. .|+ ...+..+ ...+...|++++|
T Consensus 199 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 276 (450)
T 2y4t_A 199 DLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDA 276 (450)
T ss_dssp HHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 999987 457889999999999999999999999999875 343 3334333 7788899999999
Q ss_pred HHHHHHHHHhcCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHh-cCC-CchhHHHHHHHHHhcCCChhHHHHHHH
Q 037592 204 RKHFASMTKEYRIKPK-----IEHYNCMVDLLGRAGLLEEAETLIENA-DCR-HDSSLWEVLLGACTTFRNAHVAERVAK 276 (337)
Q Consensus 204 ~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~ 276 (337)
...++.+++. .|+ ...+..++.++.+.|++++|...++++ ... .+...|..+..+|...|++++|...++
T Consensus 277 ~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 353 (450)
T 2y4t_A 277 TSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYE 353 (450)
T ss_dssp HHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9999999764 344 457888999999999999999999985 333 467889999999999999999999999
Q ss_pred HHHhcCCCccchHHHHHHH------------HHHcC-----ChhhHHHHHHHH
Q 037592 277 KIMELKPDCHLSYVLLDNV------------YRAVG-----RWNDAFKIRTLM 312 (337)
Q Consensus 277 ~~~~~~p~~~~~~~~l~~~------------~~~~g-----~~~~A~~~~~~m 312 (337)
++.++.|+++..+..+..+ |...| +.+++.+.|+++
T Consensus 354 ~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~ 406 (450)
T 2y4t_A 354 TAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKL 406 (450)
T ss_dssp HHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHH
T ss_pred HHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHH
Confidence 9999999998888888844 44445 556667777763
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-23 Score=185.59 Aligned_cols=312 Identities=13% Similarity=-0.032 Sum_probs=210.0
Q ss_pred CchhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHcc--cC-ChhhHHHHHHHHHcCCChhHHHHHHHH
Q 037592 1 RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKML--KK-NSVSSSALLQGYCQTGDFESVIRIFRE 77 (337)
Q Consensus 1 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 77 (337)
++++|...|+.+++.+ |+..+|..+..++.+.|++++|+..|+++. .| +..+|..++.++...|++++|+..|++
T Consensus 21 ~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 98 (514)
T 2gw1_A 21 KYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSV 98 (514)
T ss_dssp CHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4678999999999885 788889999999999999999999998873 33 567788888999999999999988888
Q ss_pred Hhh--cC-------------------------------------------------------------------------
Q 037592 78 MEE--ID------------------------------------------------------------------------- 82 (337)
Q Consensus 78 ~~~--~~------------------------------------------------------------------------- 82 (337)
+.. |+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (514)
T 2gw1_A 99 LSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFA 178 (514)
T ss_dssp HHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCS
T ss_pred HHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHH
Confidence 765 21
Q ss_pred -------cccHHHHHHHHHh---hchhhhhHHHHHHHHH-----h--hC------CCCchhHHHHHHHHHhcCCHHHHHH
Q 037592 83 -------LFSFGIVLRACAG---LAALRLGKEVHCQYIR-----R--SG------CKDVIIESALVDLYAKCGCVDFAHQ 139 (337)
Q Consensus 83 -------~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~--~~------~~~~~~~~~l~~~~~~~g~~~~A~~ 139 (337)
...+......+.. .|++++|...++++++ . .+ +.+..++..+...+...|++++|..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 258 (514)
T 2gw1_A 179 NYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHE 258 (514)
T ss_dssp SCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 1111222222222 5667777777766666 2 10 1224455556666666666666666
Q ss_pred HHhcCC------------------------------------CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCC
Q 037592 140 IFLQMP------------------------------------VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPD 183 (337)
Q Consensus 140 ~~~~~~------------------------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 183 (337)
.|+++. +.+..++..+...|...|++++|...|+++.+.... +
T Consensus 259 ~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~ 337 (514)
T 2gw1_A 259 DIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-N 337 (514)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-C
T ss_pred HHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-h
Confidence 665543 123445555666666666666666666666654222 3
Q ss_pred HhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-c---CCCc----hhHH
Q 037592 184 HVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-D---CRHD----SSLW 255 (337)
Q Consensus 184 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~~~----~~~~ 255 (337)
...+..+...+...|++++|...++.+++.. +.+..++..++..+...|++++|...++++ . ..++ ...+
T Consensus 338 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 415 (514)
T 2gw1_A 338 IFPYIQLACLAYRENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPL 415 (514)
T ss_dssp SHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHH
Confidence 4455566666667777777777777765432 334566777777777777777777777653 1 1122 2367
Q ss_pred HHHHHHHhc---CCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCC
Q 037592 256 EVLLGACTT---FRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGV 317 (337)
Q Consensus 256 ~~l~~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 317 (337)
..+...+.. .|++++|...++++.+..|+++.++..++.+|...|++++|...|++..+...
T Consensus 416 ~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 480 (514)
T 2gw1_A 416 VGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLAR 480 (514)
T ss_dssp HHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcc
Confidence 777777777 78888888888888887887777778888888888888888888887776543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.5e-23 Score=173.62 Aligned_cols=294 Identities=10% Similarity=0.030 Sum_probs=240.6
Q ss_pred chHhHHHHHHHHHhcCChHHHHHHHHHccc---CChhhHHHHHHHHHcCCChhHHHHHHHHHhh--c-CcccHHHHHHHH
Q 037592 20 NVVVESSLVDMYGKCGLVDESHRVFDKMLK---KNSVSSSALLQGYCQTGDFESVIRIFREMEE--I-DLFSFGIVLRAC 93 (337)
Q Consensus 20 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~ 93 (337)
|+..+..+...+...|++++|+..|+++.. .+...+..+..++...|++++|+..++++.+ | +...+..+..++
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 456778888999999999999999998832 3577889999999999999999999999988 4 445788888999
Q ss_pred HhhchhhhhHHHHHHHHHhhCC--CCchhHHHH------------HHHHHhcCCHHHHHHHHhcCC---CCcHHhHHHHH
Q 037592 94 AGLAALRLGKEVHCQYIRRSGC--KDVIIESAL------------VDLYAKCGCVDFAHQIFLQMP---VRNLITWNSMI 156 (337)
Q Consensus 94 ~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~ 156 (337)
...|++++|...++++++..+. .+...+..+ ...+...|++++|+..++++. +.+...+..+.
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 161 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRA 161 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 9999999999999999876431 234444444 578899999999999999876 44678889999
Q ss_pred HHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHH------------
Q 037592 157 SGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYN------------ 224 (337)
Q Consensus 157 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------------ 224 (337)
..+...|++++|...++++.+.. +.+..++..+...+...|++++|...++.+++.. +.+...+.
T Consensus 162 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~ 238 (359)
T 3ieg_A 162 ECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVKKLNKLI 238 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--ccchHHHHHHHHHHHHHHHH
Confidence 99999999999999999998863 3466788888899999999999999999997643 33333332
Q ss_pred HHHHHHHhcCChHHHHHHHHHh-cCCCch-----hHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHH
Q 037592 225 CMVDLLGRAGLLEEAETLIENA-DCRHDS-----SLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRA 298 (337)
Q Consensus 225 ~l~~~~~~~g~~~~A~~~~~~~-~~~~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 298 (337)
.++..+.+.|++++|...+++. ...|+. ..+..+..++...|++++|+..++++.+..|+++.++..++.++..
T Consensus 239 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (359)
T 3ieg_A 239 ESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLI 318 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 3366788999999999999874 333332 2244566789999999999999999999999989999999999999
Q ss_pred cCChhhHHHHHHHHHHhC
Q 037592 299 VGRWNDAFKIRTLMKYSG 316 (337)
Q Consensus 299 ~g~~~~A~~~~~~m~~~~ 316 (337)
.|++++|...|++..+..
T Consensus 319 ~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 319 EEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp TTCHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHHhcC
Confidence 999999999999988754
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-23 Score=185.55 Aligned_cols=294 Identities=12% Similarity=-0.042 Sum_probs=249.2
Q ss_pred hHhHHHHHHHHHhcCChHHHHHHHHHc--ccCChhhHHHHHHHHHcCCChhHHHHHHHHHhh--cC-cccHHHHHHHHHh
Q 037592 21 VVVESSLVDMYGKCGLVDESHRVFDKM--LKKNSVSSSALLQGYCQTGDFESVIRIFREMEE--ID-LFSFGIVLRACAG 95 (337)
Q Consensus 21 ~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~ 95 (337)
...+..+...+.+.|++++|+..|+++ ..|+...|..++.++.+.|++++|++.++++.+ |+ ..++..+..++..
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence 456778889999999999999999999 457888999999999999999999999999998 54 3578889999999
Q ss_pred hchhhhhHHHHHHHHHhhCCC-----------------------------------------------------------
Q 037592 96 LAALRLGKEVHCQYIRRSGCK----------------------------------------------------------- 116 (337)
Q Consensus 96 ~~~~~~a~~~~~~~~~~~~~~----------------------------------------------------------- 116 (337)
.|++++|...|+++.+.++..
T Consensus 86 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA 165 (514)
T ss_dssp TTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHH
T ss_pred HhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHH
Confidence 999999999999998765411
Q ss_pred -------------------CchhHHHHHHHHHh---cCCHHHHHHHHhcCCC----------------C-cHHhHHHHHH
Q 037592 117 -------------------DVIIESALVDLYAK---CGCVDFAHQIFLQMPV----------------R-NLITWNSMIS 157 (337)
Q Consensus 117 -------------------~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~----------------~-~~~~~~~l~~ 157 (337)
+...+..+...+.. .|++++|+..|+++.. | +..++..+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (514)
T 2gw1_A 166 SFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGI 245 (514)
T ss_dssp HHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHH
Confidence 13344445555554 8999999999987654 2 3457888999
Q ss_pred HHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChH
Q 037592 158 GFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE 237 (337)
Q Consensus 158 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 237 (337)
.+...|++++|...|+++.+... +...+..+...+...|++++|...++.++.. .+.+..++..++..+...|+++
T Consensus 246 ~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~ 321 (514)
T 2gw1_A 246 FKFLKNDPLGAHEDIKKAIELFP--RVNSYIYMALIMADRNDSTEYYNYFDKALKL--DSNNSSVYYHRGQMNFILQNYD 321 (514)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTT--CTTCTHHHHHHHHHHHHTTCTT
T ss_pred HHHHCCCHHHHHHHHHHHHhhCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHhhc--CcCCHHHHHHHHHHHHHhCCHH
Confidence 99999999999999999998643 3778888889999999999999999999653 2456788999999999999999
Q ss_pred HHHHHHHHh-cCC-CchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHh
Q 037592 238 EAETLIENA-DCR-HDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYS 315 (337)
Q Consensus 238 ~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 315 (337)
+|...+++. ... .+...+..+...+...|++++|+..++++.+..|+++.++..++.++...|++++|...++++.+.
T Consensus 322 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 401 (514)
T 2gw1_A 322 QAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIEL 401 (514)
T ss_dssp HHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999999974 333 356678888899999999999999999999999998999999999999999999999999998875
Q ss_pred CCc
Q 037592 316 GVK 318 (337)
Q Consensus 316 ~~~ 318 (337)
...
T Consensus 402 ~~~ 404 (514)
T 2gw1_A 402 ENK 404 (514)
T ss_dssp HHT
T ss_pred hhc
Confidence 433
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-22 Score=171.49 Aligned_cols=295 Identities=9% Similarity=-0.021 Sum_probs=245.3
Q ss_pred CchhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHcc--cC-ChhhHHHHHHHHHcCCChhHHHHHHHH
Q 037592 1 RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKML--KK-NSVSSSALLQGYCQTGDFESVIRIFRE 77 (337)
Q Consensus 1 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 77 (337)
++++|...|+.+++.. +.+..++..+...+...|++++|...|+++. .| +...|..+..++...|++++|...|++
T Consensus 18 ~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 96 (359)
T 3ieg_A 18 QLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKK 96 (359)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHH
Confidence 5789999999999875 4567889999999999999999999999984 33 677899999999999999999999999
Q ss_pred Hhh--c---Cc-ccHHHH------------HHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHH
Q 037592 78 MEE--I---DL-FSFGIV------------LRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQ 139 (337)
Q Consensus 78 ~~~--~---~~-~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 139 (337)
+.+ | +. ..+..+ ...+...|++++|...++++++..+ .+..++..+..++...|++++|..
T Consensus 97 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~ 175 (359)
T 3ieg_A 97 VLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAIS 175 (359)
T ss_dssp HHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHH
Confidence 988 5 22 233333 5788899999999999999999865 678889999999999999999999
Q ss_pred HHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHH------------HHHHHHhhcCchhhHH
Q 037592 140 IFLQMP---VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFI------------GVLSACSHMGLIDRGR 204 (337)
Q Consensus 140 ~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~------------~l~~~~~~~~~~~~a~ 204 (337)
.++++. +.+..++..+...|...|++++|...|++..+.... +...+. .+...+.+.|++++|.
T Consensus 176 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~ 254 (359)
T 3ieg_A 176 DLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDAT 254 (359)
T ss_dssp HHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999876 446788999999999999999999999999885322 233222 2256688999999999
Q ss_pred HHHHHHHHhcCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHh-c-CCCchhHHHHHHHHHhcCCChhHHHHHHHHH
Q 037592 205 KHFASMTKEYRIKPKI----EHYNCMVDLLGRAGLLEEAETLIENA-D-CRHDSSLWEVLLGACTTFRNAHVAERVAKKI 278 (337)
Q Consensus 205 ~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 278 (337)
..++.+++.. +.+. ..+..+..++...|++++|...+++. . .+.+...+..+...+...|++++|...++++
T Consensus 255 ~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 332 (359)
T 3ieg_A 255 SKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAA 332 (359)
T ss_dssp HHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999997653 2233 33556788999999999999999974 3 3336778889999999999999999999999
Q ss_pred HhcCCCccchHHHHHHHHHHcC
Q 037592 279 MELKPDCHLSYVLLDNVYRAVG 300 (337)
Q Consensus 279 ~~~~p~~~~~~~~l~~~~~~~g 300 (337)
.+..|+++..+..+..+....+
T Consensus 333 ~~~~p~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 333 QEHNENDQQIREGLEKAQRLLK 354 (359)
T ss_dssp HTTCTTCHHHHHHHHHHHHHHH
T ss_pred HhcCCCChHHHHHHHHHHHHHH
Confidence 9999999888888877765543
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.93 E-value=7.6e-23 Score=181.89 Aligned_cols=312 Identities=11% Similarity=-0.006 Sum_probs=241.1
Q ss_pred CchhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHcc--cC-ChhhHHHHHHHHHcCCChhHHHHHHHH
Q 037592 1 RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKML--KK-NSVSSSALLQGYCQTGDFESVIRIFRE 77 (337)
Q Consensus 1 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 77 (337)
++++|...|+.+++.. +.+..++..+..+|.+.|++++|++.|+++. .| +...+..+..++...|++++|+..|+.
T Consensus 40 ~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 118 (537)
T 3fp2_A 40 NFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSV 118 (537)
T ss_dssp CCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4678999999999875 4577888889999999999999999999883 33 567788888888888888888887743
Q ss_pred H-------------------------------------------------------------------------------
Q 037592 78 M------------------------------------------------------------------------------- 78 (337)
Q Consensus 78 ~------------------------------------------------------------------------------- 78 (337)
+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (537)
T 3fp2_A 119 LSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSD 198 (537)
T ss_dssp HC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHH
T ss_pred HhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHH
Confidence 3
Q ss_pred ------------------------------hh--cCc--------ccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCc
Q 037592 79 ------------------------------EE--IDL--------FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDV 118 (337)
Q Consensus 79 ------------------------------~~--~~~--------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 118 (337)
.+ |+. .++..+...+...|++++|...++++++..+ +.
T Consensus 199 ~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~--~~ 276 (537)
T 3fp2_A 199 ALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHP--TP 276 (537)
T ss_dssp HHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC--CH
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC--Cc
Confidence 11 111 1244445566677778888888888887653 36
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHh
Q 037592 119 IIESALVDLYAKCGCVDFAHQIFLQMP---VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS 195 (337)
Q Consensus 119 ~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 195 (337)
.++..+...+...|++++|...++++. +.+..++..+...|...|++++|...|+++.+.... +...+..+...+.
T Consensus 277 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~ 355 (537)
T 3fp2_A 277 NSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-NVYPYIQLACLLY 355 (537)
T ss_dssp HHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 777778888888888888888888776 345778888888999999999999999998875322 4567777888888
Q ss_pred hcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cCCC-------chhHHHHHHHHHhcC--
Q 037592 196 HMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DCRH-------DSSLWEVLLGACTTF-- 265 (337)
Q Consensus 196 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-------~~~~~~~l~~~~~~~-- 265 (337)
..|++++|...++.+++.. +.+...+..+...+...|++++|...|++. ...| ....+......+...
T Consensus 356 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 433 (537)
T 3fp2_A 356 KQGKFTESEAFFNETKLKF--PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSS 433 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999987653 455778888899999999999999998874 1111 111233344556666
Q ss_pred --------CChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCCc
Q 037592 266 --------RNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVK 318 (337)
Q Consensus 266 --------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 318 (337)
|++++|+..++++.+..|+++.++..++.+|...|++++|...|++..+....
T Consensus 434 ~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 434 QDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILART 494 (537)
T ss_dssp C----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred ccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999998876543
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-22 Score=169.25 Aligned_cols=283 Identities=11% Similarity=-0.001 Sum_probs=206.2
Q ss_pred CCCchHhHHHHHHHHHhcCChHHHHHHHHHccc--C-ChhhHHHHHHHHHcCCChhHHHHHHHHHhh--c-CcccHHHHH
Q 037592 17 LCGNVVVESSLVDMYGKCGLVDESHRVFDKMLK--K-NSVSSSALLQGYCQTGDFESVIRIFREMEE--I-DLFSFGIVL 90 (337)
Q Consensus 17 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~ 90 (337)
.+.+...+..++..+...|++++|.++|+++.. | +...+..++.++...|++++|..+++++.+ | +...+..+.
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 97 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVG 97 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 355666777777888888888888888888732 2 455666777778888888888888888877 3 445677777
Q ss_pred HHHHhhc-hhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHh
Q 037592 91 RACAGLA-ALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP---VRNLITWNSMISGFAQNGRGE 166 (337)
Q Consensus 91 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~ 166 (337)
..+...| ++++|...++++++..+ .+...+..+..++...|++++|+..++++. +.+...+..+...|...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence 7788888 78888888888877654 456777778888888888888888887776 334566777778888888888
Q ss_pred HHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcC-------CCCCHHHHHHHHHHHHhcCChHHH
Q 037592 167 EALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYR-------IKPKIEHYNCMVDLLGRAGLLEEA 239 (337)
Q Consensus 167 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A 239 (337)
+|...++++.+.. +.+...+..+...+...|++++|...++.+++... .+....++..++.+|...|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 8888888887753 23456677777778888888888888887765321 133456777788888888888888
Q ss_pred HHHHHHh-c-CCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHH-HHcCC
Q 037592 240 ETLIENA-D-CRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY-RAVGR 301 (337)
Q Consensus 240 ~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~ 301 (337)
...+++. . .+.+...+..+...+...|++++|...++++.+..|+++..+..+..++ ...|+
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCc
Confidence 8888763 2 2234566777777788888888888888888888888777777777777 34444
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=6e-22 Score=164.91 Aligned_cols=274 Identities=11% Similarity=0.022 Sum_probs=233.4
Q ss_pred cCChhhHHHHHHHHHcCCChhHHHHHHHHHhh--c-CcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHH
Q 037592 49 KKNSVSSSALLQGYCQTGDFESVIRIFREMEE--I-DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALV 125 (337)
Q Consensus 49 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 125 (337)
..+...+..++..+...|++++|+++|+++.+ | +...+..++.++...|++++|..+++++++..+ .+..++..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHH
Confidence 34677788899999999999999999999988 3 445677788999999999999999999999865 6788899999
Q ss_pred HHHHhcC-CHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchh
Q 037592 126 DLYAKCG-CVDFAHQIFLQMP---VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLID 201 (337)
Q Consensus 126 ~~~~~~g-~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 201 (337)
..+...| ++++|...|+++. +.+...|..+...+...|++++|...|+++.+.... +...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHH
Confidence 9999999 9999999999876 345678999999999999999999999999886433 4556677888999999999
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhc-----------CCCchhHHHHHHHHHhcCCChhH
Q 037592 202 RGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENAD-----------CRHDSSLWEVLLGACTTFRNAHV 270 (337)
Q Consensus 202 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----------~~~~~~~~~~l~~~~~~~g~~~~ 270 (337)
+|...++.+++. .+.+..++..++..+...|++++|...+++.- .+.....+..+..++...|++++
T Consensus 177 ~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 177 LAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 999999999753 25567889999999999999999999998641 13345678899999999999999
Q ss_pred HHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCCccCCCCcceec
Q 037592 271 AERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEA 328 (337)
Q Consensus 271 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ 328 (337)
|+..++++.+..|+++.++..++.++...|++++|...+++..+.. |+....|..+
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l 310 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR--RDDTFSVTML 310 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC--SCCHHHHHHH
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC--CCchHHHHHH
Confidence 9999999999999999999999999999999999999999877643 4343344333
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.3e-22 Score=170.21 Aligned_cols=280 Identities=11% Similarity=-0.002 Sum_probs=223.8
Q ss_pred HHHhcCChHHHHH-HHHHccc--C-----ChhhHHHHHHHHHcCCChhHHHHHHHHHhh--c-CcccHHHHHHHHHhhch
Q 037592 30 MYGKCGLVDESHR-VFDKMLK--K-----NSVSSSALLQGYCQTGDFESVIRIFREMEE--I-DLFSFGIVLRACAGLAA 98 (337)
Q Consensus 30 ~~~~~~~~~~A~~-~~~~~~~--~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~ 98 (337)
.+...|++++|+. .|++... | +...+..+...+...|++++|+.+|+++.+ | +..++..+..++...|+
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC
Confidence 3445688999998 8887632 2 345688999999999999999999999998 3 44578888999999999
Q ss_pred hhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC--CC-cHHhHHH---------------HHHHHH
Q 037592 99 LRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP--VR-NLITWNS---------------MISGFA 160 (337)
Q Consensus 99 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~---------------l~~~~~ 160 (337)
+++|...++++++..+ .+..++..+..+|...|++++|+..++++. .| +...+.. .+..+.
T Consensus 114 ~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 114 ELLAISALRRCLELKP-DNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH
T ss_pred HHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 9999999999999875 678899999999999999999999999876 22 2222221 133334
Q ss_pred hCCCHhHHHHHHHHHHhcCCCC-CHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHH
Q 037592 161 QNGRGEEALRIFDDMTEGGTKP-DHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239 (337)
Q Consensus 161 ~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 239 (337)
..|++++|...|+++.+..... +..++..+...+...|++++|...+++++... +.+..++..++..+...|++++|
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--PNDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHcCCHHHH
Confidence 8899999999999998864321 46788888999999999999999999997652 45678999999999999999999
Q ss_pred HHHHHHh-cC-CCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCc-----------cchHHHHHHHHHHcCChhhHH
Q 037592 240 ETLIENA-DC-RHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDC-----------HLSYVLLDNVYRAVGRWNDAF 306 (337)
Q Consensus 240 ~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A~ 306 (337)
...|++. .. +.+...+..+..+|...|++++|...++++.+..|++ ..+|..++.+|...|++++|.
T Consensus 271 ~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 350 (368)
T 1fch_A 271 VAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350 (368)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence 9999974 33 3456778889999999999999999999999988876 689999999999999999999
Q ss_pred HHHHHH
Q 037592 307 KIRTLM 312 (337)
Q Consensus 307 ~~~~~m 312 (337)
.++++-
T Consensus 351 ~~~~~~ 356 (368)
T 1fch_A 351 AADARD 356 (368)
T ss_dssp HHHTTC
T ss_pred HhHHHH
Confidence 988643
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.90 E-value=3e-22 Score=169.40 Aligned_cols=258 Identities=10% Similarity=-0.059 Sum_probs=212.7
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHHhh--c-CcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHH
Q 037592 51 NSVSSSALLQGYCQTGDFESVIRIFREMEE--I-DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDL 127 (337)
Q Consensus 51 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 127 (337)
+...|..++..+.+.|++++|+++|+++.+ | +..++..+..++...|++++|...++++++..+ .+..++..+..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence 455689999999999999999999999988 4 456788899999999999999999999999865 668899999999
Q ss_pred HHhcCCHHHHHHHHhcCCC--Cc-----------HHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCC-CCHhHHHHHHHH
Q 037592 128 YAKCGCVDFAHQIFLQMPV--RN-----------LITWNSMISGFAQNGRGEEALRIFDDMTEGGTK-PDHVSFIGVLSA 193 (337)
Q Consensus 128 ~~~~g~~~~A~~~~~~~~~--~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~l~~~ 193 (337)
|...|++++|+..|+++.. |+ ...+..+...+...|++++|..+|+++.+.... ++..++..+...
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 9999999999999998872 22 123344588899999999999999999986432 157788889999
Q ss_pred HhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cCCC-chhHHHHHHHHHhcCCChhHH
Q 037592 194 CSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DCRH-DSSLWEVLLGACTTFRNAHVA 271 (337)
Q Consensus 194 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a 271 (337)
+...|++++|...++++++.. +.+..++..++.+|...|++++|...|++. ...| +..++..+..+|...|++++|
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVR--PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 999999999999999997653 556889999999999999999999999974 3334 477888999999999999999
Q ss_pred HHHHHHHHhcCCC------------ccchHHHHHHHHHHcCChhhHHHHHHH
Q 037592 272 ERVAKKIMELKPD------------CHLSYVLLDNVYRAVGRWNDAFKIRTL 311 (337)
Q Consensus 272 ~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (337)
...++++.++.|+ +...|..+..++...|+.+.+..+.++
T Consensus 301 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 301 VSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999997766 367899999999999999988877654
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.89 E-value=6.6e-21 Score=169.37 Aligned_cols=293 Identities=12% Similarity=0.007 Sum_probs=237.0
Q ss_pred chHhHHHHHHHHHhcCChHHHHHHHHHcc--c-CChhhHHHHHHHHHcCCChhHHHHHHHHHhh--c-CcccHHHHHHHH
Q 037592 20 NVVVESSLVDMYGKCGLVDESHRVFDKML--K-KNSVSSSALLQGYCQTGDFESVIRIFREMEE--I-DLFSFGIVLRAC 93 (337)
Q Consensus 20 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~ 93 (337)
....+..+...+.+.|++++|+..|++++ . .+..+|..++.+|.+.|++++|++.|+++.+ | +..++..+..++
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 34667888999999999999999999983 3 3678899999999999999999999999998 4 345788889999
Q ss_pred HhhchhhhhHHHHHHHHHhhCCCCch------------------------------------------------------
Q 037592 94 AGLAALRLGKEVHCQYIRRSGCKDVI------------------------------------------------------ 119 (337)
Q Consensus 94 ~~~~~~~~a~~~~~~~~~~~~~~~~~------------------------------------------------------ 119 (337)
...|++++|...|+.+ ...+.+...
T Consensus 104 ~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSS 182 (537)
T ss_dssp HHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHT
T ss_pred HHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHH
Confidence 9999999999998633 221111100
Q ss_pred -------------hHHHHHHHHH--------hcCCHHHHHHHHhcCCC--Cc--------HHhHHHHHHHHHhCCCHhHH
Q 037592 120 -------------IESALVDLYA--------KCGCVDFAHQIFLQMPV--RN--------LITWNSMISGFAQNGRGEEA 168 (337)
Q Consensus 120 -------------~~~~l~~~~~--------~~g~~~~A~~~~~~~~~--~~--------~~~~~~l~~~~~~~~~~~~a 168 (337)
....+...+. ..|++++|..+++++.. |+ ..++..+...+...|++++|
T Consensus 183 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A 262 (537)
T 3fp2_A 183 VNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDA 262 (537)
T ss_dssp SCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHH
Confidence 1111211111 12478889999888763 32 23567777888999999999
Q ss_pred HHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-c
Q 037592 169 LRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-D 247 (337)
Q Consensus 169 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 247 (337)
...|+++.+. .|+...+..+...+...|++++|...++.+++.. +.+..++..++..+...|++++|...+++. .
T Consensus 263 ~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 338 (537)
T 3fp2_A 263 QVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN--PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQS 338 (537)
T ss_dssp HHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 9999999985 4567788888899999999999999999997653 456888999999999999999999999974 2
Q ss_pred C-CCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCC
Q 037592 248 C-RHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGV 317 (337)
Q Consensus 248 ~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 317 (337)
. +.+...+..+...+...|++++|...++++.+..|+++..+..++.++...|++++|...|+++.+...
T Consensus 339 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 409 (537)
T 3fp2_A 339 LNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE 409 (537)
T ss_dssp HCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Confidence 2 334667888899999999999999999999999999999999999999999999999999999988653
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.5e-20 Score=151.40 Aligned_cols=271 Identities=11% Similarity=0.019 Sum_probs=217.0
Q ss_pred HHHHHhcCChHHHHHHHHHcccCC----hhhHHHHHHHHHcCCChhHHHHHHHHHhhcCcccHHHHHHHHHhhchhhhhH
Q 037592 28 VDMYGKCGLVDESHRVFDKMLKKN----SVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGK 103 (337)
Q Consensus 28 ~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 103 (337)
++.....|+++.|+..++.....+ ......+..+|...|+++.|+..++....|+..++..+...+...++.++|.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~ 85 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIV 85 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHH
Confidence 455678899999999999875443 2345667899999999999998876643366667888888999999999999
Q ss_pred HHHHHHHHhhCCC-CchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCC
Q 037592 104 EVHCQYIRRSGCK-DVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKP 182 (337)
Q Consensus 104 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 182 (337)
+.+++++..+..| +...+..+..++...|++++|++.+++ ..+...+..++..|.+.|++++|...|+++.+.. |
T Consensus 86 ~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p 161 (291)
T 3mkr_A 86 AELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--E 161 (291)
T ss_dssp HHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T
T ss_pred HHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--c
Confidence 9999999876434 566777888999999999999999999 5678899999999999999999999999999863 5
Q ss_pred CHhHHH---HHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cCC-CchhHHHH
Q 037592 183 DHVSFI---GVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DCR-HDSSLWEV 257 (337)
Q Consensus 183 ~~~~~~---~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~ 257 (337)
+..... .++..+...|++++|..+|+++++. .+.++..++.+..++.+.|++++|...|++. ... .++.++..
T Consensus 162 ~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~ 239 (291)
T 3mkr_A 162 DATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLIN 239 (291)
T ss_dssp TCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 543221 2234444569999999999999775 3678899999999999999999999999984 333 46778889
Q ss_pred HHHHHhcCCChhH-HHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHH
Q 037592 258 LLGACTTFRNAHV-AERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKI 308 (337)
Q Consensus 258 l~~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 308 (337)
++..+...|+.++ +.++++++.+..|+++.+. ....+.+.++++..-
T Consensus 240 l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 240 LVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVLQ 287 (291)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHHH
Confidence 9999999999876 6789999999999976433 344455555555443
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.89 E-value=4.3e-21 Score=162.35 Aligned_cols=276 Identities=12% Similarity=0.013 Sum_probs=205.8
Q ss_pred hcCChHHHHHHHHHcccCChhhHHHHHHHHHcCCChhHHHH-HHHHHhh--c-----CcccHHHHHHHHHhhchhhhhHH
Q 037592 33 KCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIR-IFREMEE--I-----DLFSFGIVLRACAGLAALRLGKE 104 (337)
Q Consensus 33 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~--~-----~~~~~~~l~~~~~~~~~~~~a~~ 104 (337)
..+.++.+...|+.+...+.. ++.-.|++++|++ .|++... | +...+..+...+...|++++|..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 85 (368)
T 1fch_A 13 DVDFWDKLQAELEEMAKRDAE-------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVL 85 (368)
T ss_dssp ----------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHH
T ss_pred CcccHHHHHHHHHHHHcCCch-------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHH
Confidence 334455555556655443322 3445588999998 8887766 2 35678899999999999999999
Q ss_pred HHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCC
Q 037592 105 VHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP---VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK 181 (337)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 181 (337)
.++++++..+ .+..++..+..++.+.|++++|+..|+++. +.+..++..+...|...|++++|...++++.+....
T Consensus 86 ~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 164 (368)
T 1fch_A 86 LFEAAVQQDP-KHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA 164 (368)
T ss_dssp HHHHHHHSCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 9999998865 678889999999999999999999999876 457789999999999999999999999999986432
Q ss_pred CCHhHHH-H--------------HHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 037592 182 PDHVSFI-G--------------VLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA 246 (337)
Q Consensus 182 p~~~~~~-~--------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 246 (337)
. ...+. . .+..+...|++++|...++.+++.....++..++..++..|...|++++|...+++.
T Consensus 165 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 243 (368)
T 1fch_A 165 Y-AHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAA 243 (368)
T ss_dssp T-GGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred c-HHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2 22221 1 233344889999999999999765322225889999999999999999999999974
Q ss_pred -cC-CCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCC
Q 037592 247 -DC-RHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGV 317 (337)
Q Consensus 247 -~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 317 (337)
.. +.+...+..+...+...|++++|+..++++.+..|+++.++..++.+|...|++++|...|++..+...
T Consensus 244 l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 316 (368)
T 1fch_A 244 LSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQR 316 (368)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 33 335678899999999999999999999999999999999999999999999999999999999987543
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-20 Score=156.99 Aligned_cols=271 Identities=8% Similarity=-0.051 Sum_probs=182.3
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHccc---CChhhHHHHHHHHHcCCChhHHHHHHHHHhh--c-CcccHHHHHHHHHh
Q 037592 22 VVESSLVDMYGKCGLVDESHRVFDKMLK---KNSVSSSALLQGYCQTGDFESVIRIFREMEE--I-DLFSFGIVLRACAG 95 (337)
Q Consensus 22 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~ 95 (337)
..+..+...+...|++++|..+|+++.. .+...+..+..++...|++++|.+.++++.+ | +..++..+..++..
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 101 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH
Confidence 3444555566666666666666666521 2344555556666666666666666666555 2 23344445555555
Q ss_pred hchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHH-HH-HHHhCCCHhHHHHHHH
Q 037592 96 LAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSM-IS-GFAQNGRGEEALRIFD 173 (337)
Q Consensus 96 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l-~~-~~~~~~~~~~a~~~~~ 173 (337)
.|++++|...++++++..+ .+...+..+.... ++......+ .. .+...|++++|...++
T Consensus 102 ~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 162 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQP-QYEQLGSVNLQAD------------------VDIDDLNVQSEDFFFAAPNEYRECRTLLH 162 (327)
T ss_dssp TTCHHHHHHHHHHHHHTST-TTTTC--------------------------------------CCTTSHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCC-ccHHHHHHHhHHH------------------HHHHHHHHHHHhHHHHHcccHHHHHHHHH
Confidence 5555555555555554432 1122221111000 011111112 22 3677889999999999
Q ss_pred HHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cC-CCc
Q 037592 174 DMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DC-RHD 251 (337)
Q Consensus 174 ~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~ 251 (337)
++.+... .+...+..+...+...|++++|...++.+++.. +.+..++..++..+...|++++|...+++. .. +.+
T Consensus 163 ~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 239 (327)
T 3cv0_A 163 AALEMNP-NDAQLHASLGVLYNLSNNYDSAAANLRRAVELR--PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGY 239 (327)
T ss_dssp HHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHhhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence 9888643 366778888889999999999999999987642 456788899999999999999999999874 32 335
Q ss_pred hhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCC------------ccchHHHHHHHHHHcCChhhHHHHHHHHHH
Q 037592 252 SSLWEVLLGACTTFRNAHVAERVAKKIMELKPD------------CHLSYVLLDNVYRAVGRWNDAFKIRTLMKY 314 (337)
Q Consensus 252 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 314 (337)
...+..+...+...|++++|.+.++++.+..|+ ++..+..++.++...|++++|..++++..+
T Consensus 240 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 240 VRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 677888889999999999999999999998888 788999999999999999999999875543
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=5.7e-21 Score=161.57 Aligned_cols=233 Identities=12% Similarity=-0.016 Sum_probs=197.1
Q ss_pred CcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhHHHHHHH
Q 037592 82 DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP---VRNLITWNSMISG 158 (337)
Q Consensus 82 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~ 158 (337)
+...+..+...+.+.|++++|...++++++..+ .+..++..+..+|.+.|++++|+..|+++. +.+..++..+..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 445689999999999999999999999999875 678899999999999999999999999887 4467899999999
Q ss_pred HHhCCCHhHHHHHHHHHHhcCCCCCH-----------hHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 037592 159 FAQNGRGEEALRIFDDMTEGGTKPDH-----------VSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMV 227 (337)
Q Consensus 159 ~~~~~~~~~a~~~~~~m~~~~~~p~~-----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 227 (337)
|...|++++|+..|+++.+.. |+. ..+..+...+...|++++|...++++++.....++..++..++
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 999999999999999998743 321 2223347788899999999999999987642222688999999
Q ss_pred HHHHhcCChHHHHHHHHHh-c-CCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhH
Q 037592 228 DLLGRAGLLEEAETLIENA-D-CRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDA 305 (337)
Q Consensus 228 ~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 305 (337)
..|...|++++|...|++. . .+.+..+|..+..+|...|++++|+..++++.+..|+++.++..++.+|...|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999984 2 3346778999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCC
Q 037592 306 FKIRTLMKYSGV 317 (337)
Q Consensus 306 ~~~~~~m~~~~~ 317 (337)
...|++..+...
T Consensus 301 ~~~~~~al~~~~ 312 (365)
T 4eqf_A 301 VSNFLTALSLQR 312 (365)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhCc
Confidence 999999987543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.5e-21 Score=163.45 Aligned_cols=268 Identities=12% Similarity=0.042 Sum_probs=125.9
Q ss_pred HhcCChHHHHHHHHHcccCChhhHHHHHHHHHcCCChhHHHHHHHHHhhcCcccHHHHHHHHHhhchhhhhHHHHHHHHH
Q 037592 32 GKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIR 111 (337)
Q Consensus 32 ~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 111 (337)
-+.|++++|.+.++++..| .+|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|+.+++..++
T Consensus 14 ~~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark 89 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARK 89 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3678899999999999554 59999999999999999999999765 6777999999999999999999998887777
Q ss_pred hhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHH
Q 037592 112 RSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVL 191 (337)
Q Consensus 112 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 191 (337)
. .+++.+.+.++.+|.+.|+++++.++++. |+..+|+.++..|...|++++|..+|..+ ..|..++
T Consensus 90 ~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA 155 (449)
T 1b89_A 90 K--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLA 155 (449)
T ss_dssp ---------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHHHHH
T ss_pred h--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHH
Confidence 4 35578889999999999999999988864 77789999999999999999999999977 4788999
Q ss_pred HHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhcCCCchhHHHHHHHHHhcCCChhHH
Q 037592 192 SACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVA 271 (337)
Q Consensus 192 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 271 (337)
.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+...|+. ...++..|.+.|.+++|
T Consensus 156 ~~L~~Lg~yq~AVea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~--l~~lv~~Yek~G~~eEa 226 (449)
T 1b89_A 156 STLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE--LEELINYYQDRGYFEEL 226 (449)
T ss_dssp HHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHH--HHHHHHHHHHTTCHHHH
T ss_pred HHHHHhccHHHHHHHHHHc-------CCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhh--HHHHHHHHHHCCCHHHH
Confidence 9999999999999999887 26889999999999999999997776666655554 45688899999999999
Q ss_pred HHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHH-HhCCcc-----CCCCccee
Q 037592 272 ERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMK-YSGVKK-----MPGKSWIE 327 (337)
Q Consensus 272 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~~~~~-----~~~~~~~~ 327 (337)
+.+++..+.++|.....|..|..+|++- ++++.++.++... +-+++| ....-|.+
T Consensus 227 i~lLe~aL~le~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e 287 (449)
T 1b89_A 227 ITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAE 287 (449)
T ss_dssp HHHHHHHTTSTTCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 9999999999999888899988888874 4555555554433 334544 44555543
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=7.4e-19 Score=153.75 Aligned_cols=322 Identities=11% Similarity=-0.032 Sum_probs=214.5
Q ss_pred CchhhHHHHHHHHhc-------CCCC-chHhHHHHHHHHHhcCChHHHHHHHHHccc-------C----ChhhHHHHHHH
Q 037592 1 RLKQGKEVHAKVITL-------GLCG-NVVVESSLVDMYGKCGLVDESHRVFDKMLK-------K----NSVSSSALLQG 61 (337)
Q Consensus 1 ~~~~a~~~~~~~~~~-------~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~----~~~~~~~l~~~ 61 (337)
++++|++.|++.++. ...| ...+|+.+..+|...|++++|...+++... + ...++..+..+
T Consensus 66 ~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~ 145 (472)
T 4g1t_A 66 QNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWT 145 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHH
Confidence 457788888776552 1233 356799999999999999999999987721 1 24456666555
Q ss_pred HHc--CCChhHHHHHHHHHhh--cCcc-cHHHHHHHH---HhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHh---
Q 037592 62 YCQ--TGDFESVIRIFREMEE--IDLF-SFGIVLRAC---AGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAK--- 130 (337)
Q Consensus 62 ~~~--~g~~~~A~~~~~~~~~--~~~~-~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 130 (337)
+.. .+++++|++.|++..+ |+.. .+..+..++ ...++.++|++.+++.++..+ .+..++..+...+..
T Consensus 146 ~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p-~~~~~~~~l~~~~~~~~~ 224 (472)
T 4g1t_A 146 RLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP-DNQYLKVLLALKLHKMRE 224 (472)
T ss_dssp HHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS-SCHHHHHHHHHHHHHCC-
T ss_pred HHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC-cchHHHHHHHHHHHHHHh
Confidence 544 5679999999999988 5543 344444443 445667889999999998865 566667666655554
Q ss_pred -cCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhc---------
Q 037592 131 -CGCVDFAHQIFLQMP---VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHM--------- 197 (337)
Q Consensus 131 -~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~--------- 197 (337)
.|++++|.+.+++.. +.+..++..+...|...|++++|...+++..+..+. +..++..+..+|...
T Consensus 225 ~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~y~~~~~~~~~~~~ 303 (472)
T 4g1t_A 225 EGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQIGCCYRAKVFQVMNLRE 303 (472)
T ss_dssp -----CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHC--
T ss_pred hhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHhhhHHH
Confidence 467788999998765 456778999999999999999999999999885322 445555555554322
Q ss_pred ----------CchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cCCCchhH----HHHHHH-H
Q 037592 198 ----------GLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DCRHDSSL----WEVLLG-A 261 (337)
Q Consensus 198 ----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~----~~~l~~-~ 261 (337)
+..+.|...++.+.+.. +.+..++..+...|...|++++|+..|++. ...|+... +..+.. .
T Consensus 304 ~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~ 381 (472)
T 4g1t_A 304 NGMYGKRKLLELIGHAVAHLKKADEAN--DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQ 381 (472)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHC--TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhhcC--CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 33567888888886543 445567888999999999999999999974 34443322 222222 2
Q ss_pred HhcCCChhHHHHHHHHHHhc------------------------CCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCC
Q 037592 262 CTTFRNAHVAERVAKKIMEL------------------------KPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGV 317 (337)
Q Consensus 262 ~~~~g~~~~a~~~~~~~~~~------------------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 317 (337)
....|++++|+..|++++++ +|+++.+|..++.+|...|++++|++.|++..+.|.
T Consensus 382 ~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~ 461 (472)
T 4g1t_A 382 LYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGS 461 (472)
T ss_dssp HHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC--------------
T ss_pred HHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 45789999999988887654 567788999999999999999999999999999877
Q ss_pred ccCCCCcce
Q 037592 318 KKMPGKSWI 326 (337)
Q Consensus 318 ~~~~~~~~~ 326 (337)
......+|+
T Consensus 462 ~~p~a~~~~ 470 (472)
T 4g1t_A 462 LIPSASSWN 470 (472)
T ss_dssp ---------
T ss_pred CCCcHhhcC
Confidence 665666664
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.86 E-value=4.6e-20 Score=153.27 Aligned_cols=240 Identities=13% Similarity=0.018 Sum_probs=167.2
Q ss_pred CchhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHccc---CChhhHHHHHHHHHcCCChhHHHHHHHH
Q 037592 1 RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLK---KNSVSSSALLQGYCQTGDFESVIRIFRE 77 (337)
Q Consensus 1 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 77 (337)
++++|..+|+.+.+.. +.+..++..+...+...|++++|...|+++.. .+..++..+...+...|++++|++.+++
T Consensus 36 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 114 (327)
T 3cv0_A 36 NLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRA 114 (327)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4688999999999875 44778889999999999999999999999832 3677899999999999999999999999
Q ss_pred Hhh--cCcc-cHHHH--------------HH-HHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHH
Q 037592 78 MEE--IDLF-SFGIV--------------LR-ACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQ 139 (337)
Q Consensus 78 ~~~--~~~~-~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 139 (337)
+.+ |+.. .+..+ .. .+...|++++|...++++++..+ .+..++..+...+...|++++|..
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~ 193 (327)
T 3cv0_A 115 WLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP-NDAQLHASLGVLYNLSNNYDSAAA 193 (327)
T ss_dssp HHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhccHHHHHH
Confidence 988 4333 33333 22 36677888888888888877654 456667777777777777777777
Q ss_pred HHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCC
Q 037592 140 IFLQMP---VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRI 216 (337)
Q Consensus 140 ~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 216 (337)
.++++. +.+..++..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|.+.++.++...
T Consensus 194 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-- 270 (327)
T 3cv0_A 194 NLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQ-- 270 (327)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--
Confidence 776655 2345566666666777777777777777666542 2244555566666666666666666666665432
Q ss_pred CC------------CHHHHHHHHHHHHhcCChHHHHHHHHH
Q 037592 217 KP------------KIEHYNCMVDLLGRAGLLEEAETLIEN 245 (337)
Q Consensus 217 ~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 245 (337)
+. +..++..+..++...|++++|..++++
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 271 VGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp TTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred CccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 11 245555566666666666666665543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-21 Score=163.80 Aligned_cols=275 Identities=13% Similarity=0.111 Sum_probs=136.1
Q ss_pred chhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHcccCChhhHHHHHHHHHcCCChhHHHHHHHHHhh-
Q 037592 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEE- 80 (337)
Q Consensus 2 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 80 (337)
+++|.++++.+ ++..+|+.|+.++.+.|++++|++.|.+. +|...|..++.++...|++++|+.+++..++
T Consensus 19 ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~ 90 (449)
T 1b89_A 19 LDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKK 90 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 56677777776 33459999999999999999999999764 5777999999999999999999999988877
Q ss_pred -cCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHH
Q 037592 81 -IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGF 159 (337)
Q Consensus 81 -~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~ 159 (337)
+++.+.+.++.+|.+.|++.++.++++ .|+..+|..++..|...|++++|...|.++ ..|..++.++
T Consensus 91 ~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~~L 158 (449)
T 1b89_A 91 ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTL 158 (449)
T ss_dssp ------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----TCHHHHHHHH
T ss_pred CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHHHH
Confidence 677889999999999999999998874 267779999999999999999999999987 5899999999
Q ss_pred HhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHH
Q 037592 160 AQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239 (337)
Q Consensus 160 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 239 (337)
.+.|++++|.+.++++ .+..+|..++.+|...|+++.|......+ ...+.-...++..|.+.|++++|
T Consensus 159 ~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L------~~~ad~l~~lv~~Yek~G~~eEa 226 (449)
T 1b89_A 159 VHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI------VVHADELEELINYYQDRGYFEEL 226 (449)
T ss_dssp HTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT------TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH------HhCHhhHHHHHHHHHHCCCHHHH
Confidence 9999999999999988 26789999999999999999996655432 23444455789999999999999
Q ss_pred HHHHHH-hcCC-CchhHHHHHHHHHhcC--CChhHHHHHHHHHHhcCC-----CccchHHHHHHHHHHcCChhhHHHH
Q 037592 240 ETLIEN-ADCR-HDSSLWEVLLGACTTF--RNAHVAERVAKKIMELKP-----DCHLSYVLLDNVYRAVGRWNDAFKI 308 (337)
Q Consensus 240 ~~~~~~-~~~~-~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~~ 308 (337)
..+++. ++.. .....|+-+..+|++- ++..+.++.|..-..+.| .+...|..++..|.+.++++.|...
T Consensus 227 i~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 227 ITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 999997 4543 3456677776666544 455555555554444556 5678999999999999999998875
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.5e-19 Score=145.45 Aligned_cols=246 Identities=11% Similarity=0.047 Sum_probs=201.7
Q ss_pred HHHHHcCCChhHHHHHHHHHhh--cCc--ccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCH
Q 037592 59 LQGYCQTGDFESVIRIFREMEE--IDL--FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCV 134 (337)
Q Consensus 59 ~~~~~~~g~~~~A~~~~~~~~~--~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 134 (337)
+......|+++.|+..+++... |+. .....+.+++...|+++.|...++. . .+|+..++..+...+...|+.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcH
Confidence 3456678999999999988766 332 3456678999999999999987654 2 346778888899999999999
Q ss_pred HHHHHHHhcCC----CC-cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHH
Q 037592 135 DFAHQIFLQMP----VR-NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFAS 209 (337)
Q Consensus 135 ~~A~~~~~~~~----~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 209 (337)
++|++.++++. .| +...+..+...+...|++++|+..+++ +.+...+..++..+.+.|++++|.+.++.
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999864 24 566778888999999999999999987 45777888889999999999999999999
Q ss_pred HHHhcCCCCCHHHH---HHHHHHHHhcCChHHHHHHHHHhc--CCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCC
Q 037592 210 MTKEYRIKPKIEHY---NCMVDLLGRAGLLEEAETLIENAD--CRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPD 284 (337)
Q Consensus 210 ~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 284 (337)
+++. .|+.... ..++..+...|++++|..+|+++- .+.+...++.+..++.+.|++++|+..++++++.+|+
T Consensus 156 ~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 232 (291)
T 3mkr_A 156 MQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG 232 (291)
T ss_dssp HHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 9765 3553211 223344556699999999999852 4557778999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHcCChhh-HHHHHHHHHHhCC
Q 037592 285 CHLSYVLLDNVYRAVGRWND-AFKIRTLMKYSGV 317 (337)
Q Consensus 285 ~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~~~ 317 (337)
++.++..++.++...|+.++ +.++++++.+...
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P 266 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR 266 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999976 5788888877543
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.84 E-value=4.4e-17 Score=143.24 Aligned_cols=301 Identities=13% Similarity=0.023 Sum_probs=151.7
Q ss_pred chhhHHHHHHHHhcCCCCchHhHHHHHHHHHh----cCChHHHHHHHHHcccC-ChhhHHHHHHHHHc----CCChhHHH
Q 037592 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGK----CGLVDESHRVFDKMLKK-NSVSSSALLQGYCQ----TGDFESVI 72 (337)
Q Consensus 2 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~g~~~~A~ 72 (337)
+++|...|+...+.| +...+..|...|.. .+++++|...|++.... +...+..|...|.. .+++++|+
T Consensus 59 ~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~ 135 (490)
T 2xm6_A 59 LTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESV 135 (490)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 345555666555543 34455555555555 56666666666655333 44455555555555 55566666
Q ss_pred HHHHHHhh-cCcccHHHHHHHHHh----hchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHh----cCCHHHHHHHHhc
Q 037592 73 RIFREMEE-IDLFSFGIVLRACAG----LAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAK----CGCVDFAHQIFLQ 143 (337)
Q Consensus 73 ~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 143 (337)
+.|++..+ -+...+..+...|.. .+++++|...|++..+.+ +...+..|...|.. .++.++|...|++
T Consensus 136 ~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~ 212 (490)
T 2xm6_A 136 KWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRK 212 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHH
Confidence 66665554 233344444444444 445555555555555442 34444445555554 4555555555544
Q ss_pred CC-CCcHHhHHHHHH------------------------------------HHHh----CCCHhHHHHHHHHHHhcCCCC
Q 037592 144 MP-VRNLITWNSMIS------------------------------------GFAQ----NGRGEEALRIFDDMTEGGTKP 182 (337)
Q Consensus 144 ~~-~~~~~~~~~l~~------------------------------------~~~~----~~~~~~a~~~~~~m~~~~~~p 182 (337)
.. ..+..++..+.. .|.. .+++++|+..|++..+.|
T Consensus 213 a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~--- 289 (490)
T 2xm6_A 213 SATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG--- 289 (490)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---
T ss_pred HHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---
Confidence 33 223333444444 4443 444444544444444332
Q ss_pred CHhHHHHHHHHHhhc-----CchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHhcCCCchhH
Q 037592 183 DHVSFIGVLSACSHM-----GLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG---LLEEAETLIENADCRHDSSL 254 (337)
Q Consensus 183 ~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~ 254 (337)
+...+..+...+... +++++|...++++.+. .+...+..+...|...| ++++|.+.|++.-...++..
T Consensus 290 ~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a 365 (490)
T 2xm6_A 290 NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAA 365 (490)
T ss_dssp CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHH
Confidence 222333333444433 4555555555554321 12334444444554434 45555555554322234445
Q ss_pred HHHHHHHHhc----CCChhHHHHHHHHHHhcCCCccchHHHHHHHHHH----cCChhhHHHHHHHHHHhCC
Q 037592 255 WEVLLGACTT----FRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRA----VGRWNDAFKIRTLMKYSGV 317 (337)
Q Consensus 255 ~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 317 (337)
+..+...|.. .+++++|...|+++.+.. ++.++..|..+|.. .+++++|...|++..+.+.
T Consensus 366 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 366 QFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 5555555555 566666666666665532 24556666666665 5666666666666666553
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.83 E-value=6.9e-17 Score=141.98 Aligned_cols=270 Identities=11% Similarity=-0.029 Sum_probs=197.6
Q ss_pred chhhHHHHHHHHhcCCCCchHhHHHHHHHHHh----cCChHHHHHHHHHcccC-ChhhHHHHHHHHHc----CCChhHHH
Q 037592 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGK----CGLVDESHRVFDKMLKK-NSVSSSALLQGYCQ----TGDFESVI 72 (337)
Q Consensus 2 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~g~~~~A~ 72 (337)
+++|...|+...+.| +...+..|..+|.. .+++++|++.|++..+. +...+..+...|.. .+++++|+
T Consensus 131 ~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~ 207 (490)
T 2xm6_A 131 KAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISA 207 (490)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHH
Confidence 455666666665544 34455555555555 55666666666665333 45556666666665 66777777
Q ss_pred HHHHHHhh-cCcccHHHHHHHHHh----hchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHh----cCCHHHHHHHHhc
Q 037592 73 RIFREMEE-IDLFSFGIVLRACAG----LAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAK----CGCVDFAHQIFLQ 143 (337)
Q Consensus 73 ~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 143 (337)
+.|++..+ .+..++..+...+.. .+++++|..++++..+.+ +...+..+...|.. .++.++|+..|++
T Consensus 208 ~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~ 284 (490)
T 2xm6_A 208 QWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRK 284 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Confidence 77776666 444456666666654 667777777777776653 34566667777777 7888888888888
Q ss_pred CCC-CcHHhHHHHHHHHHhC-----CCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcC---chhhHHHHHHHHHHhc
Q 037592 144 MPV-RNLITWNSMISGFAQN-----GRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMG---LIDRGRKHFASMTKEY 214 (337)
Q Consensus 144 ~~~-~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~ 214 (337)
... .+...+..+...|... +++++|...|++..+.| +...+..+...+...| +.++|.+.+++..+.
T Consensus 285 a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~- 360 (490)
T 2xm6_A 285 SAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK- 360 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT-
T ss_pred HHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC-
Confidence 763 4667788888888887 89999999999998864 3456666777777656 889999999999653
Q ss_pred CCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHhcCCCchhHHHHHHHHHhc----CCChhHHHHHHHHHHhcCCC
Q 037592 215 RIKPKIEHYNCMVDLLGR----AGLLEEAETLIENADCRHDSSLWEVLLGACTT----FRNAHVAERVAKKIMELKPD 284 (337)
Q Consensus 215 ~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~ 284 (337)
.++..+..|...|.. .+++++|.+.|++.-...+...+..+...|.. .+++++|...|+++.+..|+
T Consensus 361 ---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 361 ---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp ---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred ---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 467888999999998 89999999999986434467778888888877 89999999999999998887
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.81 E-value=7e-18 Score=135.15 Aligned_cols=219 Identities=10% Similarity=-0.016 Sum_probs=173.3
Q ss_pred cHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCC--C----c----HHhHHH
Q 037592 85 SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV--R----N----LITWNS 154 (337)
Q Consensus 85 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~----~----~~~~~~ 154 (337)
.+..+...+...|++++|...++++++.. .+..++..+..++...|++++|+..+++... | + ..++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 45556666777777777777777777766 6677777788888888888888888877662 1 1 467888
Q ss_pred HHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 037592 155 MISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234 (337)
Q Consensus 155 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 234 (337)
+...|...|++++|...|+++.+. .|+. ..+...|++++|...++.++.. .+.+...+..++..+...|
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhc
Confidence 888899999999999999988874 3442 3456678889999999988643 2345677888888999999
Q ss_pred ChHHHHHHHHHh-c-CCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHH
Q 037592 235 LLEEAETLIENA-D-CRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLM 312 (337)
Q Consensus 235 ~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 312 (337)
++++|...+++. . .+.+...+..+..++...|++++|+..++++.+..|+++.++..++.++...|++++|...+++.
T Consensus 154 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999999874 2 33456778888888999999999999999999999998899999999999999999999999988
Q ss_pred HHhC
Q 037592 313 KYSG 316 (337)
Q Consensus 313 ~~~~ 316 (337)
.+..
T Consensus 234 ~~~~ 237 (258)
T 3uq3_A 234 RTKD 237 (258)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 7654
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.3e-17 Score=134.89 Aligned_cols=240 Identities=13% Similarity=0.044 Sum_probs=114.8
Q ss_pred HHHHHHcCCChhHHHHHHHHHhh--cC-cccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCC--chhHHHHHHHHHhcC
Q 037592 58 LLQGYCQTGDFESVIRIFREMEE--ID-LFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD--VIIESALVDLYAKCG 132 (337)
Q Consensus 58 l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g 132 (337)
....+...|++++|+.+|+++.+ |+ ...+..+..++...|++++|...++++++....++ ...+..+..++...|
T Consensus 9 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~ 88 (272)
T 3u4t_A 9 YADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKG 88 (272)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcc
Confidence 33344444444444444444433 22 22344444444444444444444444444211011 112344444444445
Q ss_pred CHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHH
Q 037592 133 CVDFAHQIFLQMP---VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFAS 209 (337)
Q Consensus 133 ~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 209 (337)
++++|+..|++.. +.+..++..+...|...|++++|+..|++..+.. +.+...+..+...+...+++++|...++.
T Consensus 89 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 167 (272)
T 3u4t_A 89 QDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFVK 167 (272)
T ss_dssp CHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555554444443 2233444455555555555555555555544431 11223333333122223355555555555
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHh----cCCCc------hhHHHHHHHHHhcCCChhHHHHHHH
Q 037592 210 MTKEYRIKPKIEHYNCMVDLLGRAGL---LEEAETLIENA----DCRHD------SSLWEVLLGACTTFRNAHVAERVAK 276 (337)
Q Consensus 210 ~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~----~~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~ 276 (337)
+++.. +.+...+..+..++...|+ +++|...+++. ...|+ ...|..+...|...|++++|...++
T Consensus 168 a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 245 (272)
T 3u4t_A 168 VLELK--PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWK 245 (272)
T ss_dssp HHHHS--TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhC--ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 54331 2234445555555555555 55555555442 11122 2456667778888899999999999
Q ss_pred HHHhcCCCccchHHHHHHHHHHcC
Q 037592 277 KIMELKPDCHLSYVLLDNVYRAVG 300 (337)
Q Consensus 277 ~~~~~~p~~~~~~~~l~~~~~~~g 300 (337)
++.+++|+++.++..+.......+
T Consensus 246 ~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 246 NILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHCTTCHHHHHHHC-------
T ss_pred HHHhcCccHHHHHHHhhhhhcccc
Confidence 999999998877777766555443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.3e-17 Score=133.62 Aligned_cols=228 Identities=13% Similarity=0.026 Sum_probs=124.6
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHccc--CChhhHHHHHHHHHcCCChhHHHHHHHHHhh--cC--------cccHHHH
Q 037592 22 VVESSLVDMYGKCGLVDESHRVFDKMLK--KNSVSSSALLQGYCQTGDFESVIRIFREMEE--ID--------LFSFGIV 89 (337)
Q Consensus 22 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~--------~~~~~~l 89 (337)
..+..+...+...|++++|+..|++... .+...|..+..++...|++++|++.++++.+ |+ ..++..+
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 4555666666666666666666666522 4455566666666666666666666666554 21 2344444
Q ss_pred HHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHhHHH
Q 037592 90 LRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEAL 169 (337)
Q Consensus 90 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 169 (337)
..++...|++++|...++++++.. |+. ..+...|++++|.
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~~---------------------------------~~~-------~~~~~~~~~~~a~ 125 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTEH---------------------------------RTA-------DILTKLRNAEKEL 125 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC---------------------------------CCH-------HHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcC---------------------------------chh-------HHHHHHhHHHHHH
Confidence 445555555555555555554432 221 2233445555555
Q ss_pred HHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-c-
Q 037592 170 RIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-D- 247 (337)
Q Consensus 170 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~- 247 (337)
..++++.... +.+...+..+...+...|++++|...++.+++.. +.+..++..++.+|...|++++|...+++. .
T Consensus 126 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 126 KKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK 202 (258)
T ss_dssp HHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 5555555531 1123344445555556666666666666654432 334555666666666666666666666653 2
Q ss_pred CCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcC------CCccchHHHH
Q 037592 248 CRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELK------PDCHLSYVLL 292 (337)
Q Consensus 248 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l 292 (337)
.+.+...|..+..++...|++++|...++++.+.. |++...+..+
T Consensus 203 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l 253 (258)
T 3uq3_A 203 DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLY 253 (258)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHH
Confidence 22234556666666666677777777777666655 6554444443
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.80 E-value=8.5e-18 Score=131.34 Aligned_cols=196 Identities=12% Similarity=-0.015 Sum_probs=153.3
Q ss_pred CCCchhHHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHH
Q 037592 115 CKDVIIESALVDLYAKCGCVDFAHQIFLQMP---VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVL 191 (337)
Q Consensus 115 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 191 (337)
+++...+..+...+.+.|++++|+..|++.. +.+...+..+..++.+.|++++|+..|++..+..+ .+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHH
Confidence 3567788888888999999999999998765 34677888888999999999999999999888532 2556777788
Q ss_pred HHHhhc-----------CchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cCCCchhHHHHHH
Q 037592 192 SACSHM-----------GLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DCRHDSSLWEVLL 259 (337)
Q Consensus 192 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~ 259 (337)
..+... |++++|...++++++.. +.+...+..+..+|...|++++|+..|++. ....+...+..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la 158 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN--PRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHH
Confidence 888888 99999999999997652 445788899999999999999999999973 2116778889999
Q ss_pred HHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHH
Q 037592 260 GACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMK 313 (337)
Q Consensus 260 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 313 (337)
.++...|++++|+..|+++.+..|+++..+..++.++...|++++|...+++.-
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999988754
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.80 E-value=5.9e-18 Score=137.05 Aligned_cols=237 Identities=8% Similarity=-0.101 Sum_probs=166.6
Q ss_pred cCCChhHHHHHHHHHhhc-------CcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHH
Q 037592 64 QTGDFESVIRIFREMEEI-------DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDF 136 (337)
Q Consensus 64 ~~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 136 (337)
..|++++|++.|+++.+. +..++..+..++...|++++|...++++++..+ .+..++..+..+|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHHH
Confidence 345566666666665541 223455566666666666666666666666644 456777777778888888888
Q ss_pred HHHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHh
Q 037592 137 AHQIFLQMP---VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKE 213 (337)
Q Consensus 137 A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 213 (337)
|+..|+++. +.+..++..+...|...|++++|...|+++.+. .|+.......+..+...|++++|...++..+..
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 888877766 335677888888888889999999999888874 444444444555556778999999999887664
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhc-CCCc-----hhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccc
Q 037592 214 YRIKPKIEHYNCMVDLLGRAGLLEEAETLIENAD-CRHD-----SSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHL 287 (337)
Q Consensus 214 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 287 (337)
. +++...+ .++..+...++.++|...+++.- ..|. ...+..+...+...|++++|...++++.+..|++..
T Consensus 174 ~--~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 174 S--DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp S--CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred C--CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 2 3444444 36777778888889999888752 2232 467788889999999999999999999999998644
Q ss_pred hHHHHHHHHHHcCChhhHHHHH
Q 037592 288 SYVLLDNVYRAVGRWNDAFKIR 309 (337)
Q Consensus 288 ~~~~l~~~~~~~g~~~~A~~~~ 309 (337)
.+ ..++...|++++|++.+
T Consensus 251 ~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 EH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HH---HHHHHHHHHHHHC----
T ss_pred HH---HHHHHHHHHHHhhHHHH
Confidence 43 56777888899988776
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.79 E-value=3.6e-16 Score=138.79 Aligned_cols=311 Identities=9% Similarity=-0.011 Sum_probs=199.9
Q ss_pred CchhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHcc--cCChhhHHHHHH-HHHcCCChhHHHH----
Q 037592 1 RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKML--KKNSVSSSALLQ-GYCQTGDFESVIR---- 73 (337)
Q Consensus 1 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~-~~~~~g~~~~A~~---- 73 (337)
++++|..+|+.+++.. +-+...|..++..+.+.|++++|..+|++++ .|+...|...+. .....|+.+.|.+
T Consensus 27 ~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~ 105 (530)
T 2ooe_A 27 PIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKEKMAQ 105 (530)
T ss_dssp CHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTSTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHccchhhHHHHHHH
Confidence 3567778888887753 4456677888888888888888888888873 345555655553 2234566655554
Q ss_pred HHHHHhh-----c-CcccHHHHHHHHHh---------hchhhhhHHHHHHHHHhhCCCC-chhHHHHHHHH---------
Q 037592 74 IFREMEE-----I-DLFSFGIVLRACAG---------LAALRLGKEVHCQYIRRSGCKD-VIIESALVDLY--------- 128 (337)
Q Consensus 74 ~~~~~~~-----~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~--------- 128 (337)
+|++... | +...|...+..... .|+++.|..+|++.++. +..+ ..+|.......
T Consensus 106 ~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~-P~~~~~~~~~~~~~~e~~~~~~~~~ 184 (530)
T 2ooe_A 106 AYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN-PMINIEQLWRDYNKYEEGINIHLAK 184 (530)
T ss_dssp HHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS-CCTTHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc-hhhhHHHHHHHHHHHHHhhchhHHH
Confidence 5555443 1 22344444444333 57777788777777762 1111 12222111100
Q ss_pred ----HhcCCHH------------------------------------------------------------HHHHHHhcC
Q 037592 129 ----AKCGCVD------------------------------------------------------------FAHQIFLQM 144 (337)
Q Consensus 129 ----~~~g~~~------------------------------------------------------------~A~~~~~~~ 144 (337)
.+.+++. +|..+|+++
T Consensus 185 ~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~a 264 (530)
T 2ooe_A 185 KMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQC 264 (530)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHH
Confidence 0111222 233333333
Q ss_pred C---CCcHHhHHHHHHHHHh-------CCCHh-------HHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHH
Q 037592 145 P---VRNLITWNSMISGFAQ-------NGRGE-------EALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHF 207 (337)
Q Consensus 145 ~---~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 207 (337)
. +.+...|..++..+.+ .|+++ +|..+|++..+.-.+.+...+..++..+.+.|++++|..+|
T Consensus 265 l~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~ 344 (530)
T 2ooe_A 265 LLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIY 344 (530)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 3 2244556666666654 68876 88889988876312334667777888888889999999999
Q ss_pred HHHHHhcCCCCC-H-HHHHHHHHHHHhcCChHHHHHHHHHh-cCCCc-hhHHHHHHHH-HhcCCChhHHHHHHHHHHhcC
Q 037592 208 ASMTKEYRIKPK-I-EHYNCMVDLLGRAGLLEEAETLIENA-DCRHD-SSLWEVLLGA-CTTFRNAHVAERVAKKIMELK 282 (337)
Q Consensus 208 ~~~~~~~~~~~~-~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~ 282 (337)
+++++. +|+ . ..|..++..+.+.|++++|.++|++. ...|+ ...|...... +...|+++.|..+|+++++..
T Consensus 345 ~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~ 421 (530)
T 2ooe_A 345 NRLLAI---EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY 421 (530)
T ss_dssp HHHHHS---SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHhCc---cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC
Confidence 998753 454 3 47888888888889999999999874 33333 2222222212 335889999999999999989
Q ss_pred CCccchHHHHHHHHHHcCChhhHHHHHHHHHHhC
Q 037592 283 PDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSG 316 (337)
Q Consensus 283 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 316 (337)
|+++..|..++..+.+.|+.++|..+|++....+
T Consensus 422 p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 422 GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 9888899999999999999999999999988764
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=4.4e-16 Score=136.13 Aligned_cols=293 Identities=9% Similarity=-0.104 Sum_probs=215.0
Q ss_pred CchHhHHHHHHHHHhcCChHHHHHHHHHccc-----------C-ChhhHHHHHHHHHcCCChhHHHHHHHHHhh-----c
Q 037592 19 GNVVVESSLVDMYGKCGLVDESHRVFDKMLK-----------K-NSVSSSALLQGYCQTGDFESVIRIFREMEE-----I 81 (337)
Q Consensus 19 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----------~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~ 81 (337)
.....|+.|...+...|++++|++.|++..+ + ...+|+.+..+|...|++++|...+++..+ +
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 3456799999999999999999999987621 2 356799999999999999999999999876 1
Q ss_pred C------cccHHHHHHHHHh--hchhhhhHHHHHHHHHhhCCCCchhHHHHHHHH---HhcCCHHHHHHHHhcCC---CC
Q 037592 82 D------LFSFGIVLRACAG--LAALRLGKEVHCQYIRRSGCKDVIIESALVDLY---AKCGCVDFAHQIFLQMP---VR 147 (337)
Q Consensus 82 ~------~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~---~~ 147 (337)
+ ..++.....++.. .+++++|...|+++++..+ .+...+..+..++ ...++.++|++.+++.. +.
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p-~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~ 207 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP-KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD 207 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc
Confidence 1 1245555555544 4579999999999999865 4566666665553 45577788888887765 34
Q ss_pred cHHhHHHHHHHHHh----CCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHH
Q 037592 148 NLITWNSMISGFAQ----NGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHY 223 (337)
Q Consensus 148 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 223 (337)
+..++..+...+.. .|++++|..++++...... .+...+..+...+...|++++|...++++++.. +.+..++
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~ 284 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI--PNNAYLH 284 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC--CChHHHH
Confidence 56666666655544 5678999999999887633 356678888899999999999999999997653 4456777
Q ss_pred HHHHHHHHhc-------------------CChHHHHHHHHHh-c-CCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcC
Q 037592 224 NCMVDLLGRA-------------------GLLEEAETLIENA-D-CRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELK 282 (337)
Q Consensus 224 ~~l~~~~~~~-------------------g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 282 (337)
..+..+|... +.+++|...+++. . .+.+...+..+...+...|++++|+..|+++++..
T Consensus 285 ~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~ 364 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKE 364 (472)
T ss_dssp HHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcC
Confidence 7777666432 2355677777653 2 23355678888899999999999999999999988
Q ss_pred CCccc---hHHHHHH-HHHHcCChhhHHHHHHHHHHh
Q 037592 283 PDCHL---SYVLLDN-VYRAVGRWNDAFKIRTLMKYS 315 (337)
Q Consensus 283 p~~~~---~~~~l~~-~~~~~g~~~~A~~~~~~m~~~ 315 (337)
|++.. .+..++. .+...|++++|+..|++..+.
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i 401 (472)
T 4g1t_A 365 LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI 401 (472)
T ss_dssp CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 87433 2333333 345779999999999887764
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.6e-19 Score=161.89 Aligned_cols=162 Identities=13% Similarity=0.134 Sum_probs=128.3
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHhcCC-------CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHH
Q 037592 117 DVIIESALVDLYAKCGCVDFAHQIFLQMP-------VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIG 189 (337)
Q Consensus 117 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 189 (337)
...+|++||++|++.|++++|.++|++|. .||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 35689999999999999999999997653 78999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCch-hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhcCC----CchhHHHHHHHHHhc
Q 037592 190 VLSACSHMGLI-DRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCR----HDSSLWEVLLGACTT 264 (337)
Q Consensus 190 l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~l~~~~~~ 264 (337)
+|.++++.|+. +.|.++|++|. ..|+.||..+|+.++....+.+-++...++...+..+ |...+...|...|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~-~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~ 284 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMS-QEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAK 284 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHH-HHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHH-HcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHcc
Confidence 99999999984 78999999995 5599999999999987665554444443332222211 224455556677776
Q ss_pred CC---------ChhHHHHHHHHHH
Q 037592 265 FR---------NAHVAERVAKKIM 279 (337)
Q Consensus 265 ~g---------~~~~a~~~~~~~~ 279 (337)
.+ ..++....|++-+
T Consensus 285 d~~~s~pk~~~~~~~L~~~~~~Ql 308 (1134)
T 3spa_A 285 DGRVSYPKLHLPLKTLQCLFEKQL 308 (1134)
T ss_dssp CSCCCCCCCSSCHHHHHHHHHHHH
T ss_pred CCCCcCccccCCHHHHHHHHHHHH
Confidence 55 2356666666554
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.78 E-value=4.5e-17 Score=137.44 Aligned_cols=244 Identities=11% Similarity=0.037 Sum_probs=196.6
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHHHHHhh--cC-cccHHHHHHHHHhhch-hhhhHHHHHHHHHhhCCCCchhHHHHHHH
Q 037592 52 SVSSSALLQGYCQTGDFESVIRIFREMEE--ID-LFSFGIVLRACAGLAA-LRLGKEVHCQYIRRSGCKDVIIESALVDL 127 (337)
Q Consensus 52 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 127 (337)
...|+.+..++...|++++|+..++++.+ |+ ..+|..+..++...|+ +++|+..++++++..+ .+..+|..+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHH
Confidence 45688888889999999999999999888 44 4567888888888896 9999999999998876 678888899999
Q ss_pred HHhcCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhh-cCchhhH
Q 037592 128 YAKCGCVDFAHQIFLQMP---VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSH-MGLIDRG 203 (337)
Q Consensus 128 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~~~~~~a 203 (337)
+...|++++|+..|+++. +.+..+|..+..++...|++++|+..|+++++.... +...|+.+..++.. .|..++|
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchHH
Confidence 999999999999999887 446788999999999999999999999999886433 66778888888888 5665777
Q ss_pred -----HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHhcCCC-chhHHHHHHHHHhcCC--------C
Q 037592 204 -----RKHFASMTKEYRIKPKIEHYNCMVDLLGRAG--LLEEAETLIENADCRH-DSSLWEVLLGACTTFR--------N 267 (337)
Q Consensus 204 -----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~g--------~ 267 (337)
+..++++++.. +-+...|+.+..++...| ++++|.+.++++...| +...+..+..+|.+.| +
T Consensus 255 ~~~~el~~~~~Al~l~--P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~~ 332 (382)
T 2h6f_A 255 VLEREVQYTLEMIKLV--PHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKED 332 (382)
T ss_dssp HHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchHH
Confidence 47888887642 445788888888888888 6889999888875444 3456677777777763 2
Q ss_pred -hhHHHHHHHHH-HhcCCCccchHHHHHHHHHHc
Q 037592 268 -AHVAERVAKKI-MELKPDCHLSYVLLDNVYRAV 299 (337)
Q Consensus 268 -~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 299 (337)
.++|+++++++ .+++|.....|..++..+...
T Consensus 333 ~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 333 ILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 58999999999 889999888888887776653
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.78 E-value=4.5e-16 Score=125.77 Aligned_cols=230 Identities=10% Similarity=-0.009 Sum_probs=187.2
Q ss_pred hHhHHHHHHHHHhcCChHHHHHHHHHccc--C-ChhhHHHHHHHHHcCCChhHHHHHHHHHhh--cCccc----HHHHHH
Q 037592 21 VVVESSLVDMYGKCGLVDESHRVFDKMLK--K-NSVSSSALLQGYCQTGDFESVIRIFREMEE--IDLFS----FGIVLR 91 (337)
Q Consensus 21 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~----~~~l~~ 91 (337)
...+......+...|++++|+..|+++.. | +...+..+..++...|++++|++.++++.+ ++... |..+..
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 44566678899999999999999999843 3 566899999999999999999999999988 33333 788999
Q ss_pred HHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHH
Q 037592 92 ACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP---VRNLITWNSMISGFAQNGRGEEA 168 (337)
Q Consensus 92 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a 168 (337)
++...|++++|...++++++..+ .+..++..+..+|...|++++|+..|++.. +.+...+..+...+...+++++|
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999865 577899999999999999999999999988 33567788888344445699999
Q ss_pred HHHHHHHHhcCCCCCHhHHHHHHHHHhhcCc---hhhHHHHHHHHHHhcCCCCC------HHHHHHHHHHHHhcCChHHH
Q 037592 169 LRIFDDMTEGGTKPDHVSFIGVLSACSHMGL---IDRGRKHFASMTKEYRIKPK------IEHYNCMVDLLGRAGLLEEA 239 (337)
Q Consensus 169 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A 239 (337)
...|+++.+... .+...+..+...+...|+ +++|...++++++...-.|+ ..++..+...|...|++++|
T Consensus 162 ~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 162 DSSFVKVLELKP-NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHHST-TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhCc-cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 999999998632 245667777778888888 88899999998765433344 25788899999999999999
Q ss_pred HHHHHHh-cCCCch
Q 037592 240 ETLIENA-DCRHDS 252 (337)
Q Consensus 240 ~~~~~~~-~~~~~~ 252 (337)
.+.|++. ...|+.
T Consensus 241 ~~~~~~al~~~p~~ 254 (272)
T 3u4t_A 241 DAAWKNILALDPTN 254 (272)
T ss_dssp HHHHHHHHHHCTTC
T ss_pred HHHHHHHHhcCccH
Confidence 9999974 344543
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.4e-17 Score=127.92 Aligned_cols=192 Identities=14% Similarity=0.033 Sum_probs=93.8
Q ss_pred CchHhHHHHHHHHHhcCChHHHHHHHHHccc--C-ChhhHHHHHHHHHcCCChhHHHHHHHHHhhcCcccHHHHHHHHHh
Q 037592 19 GNVVVESSLVDMYGKCGLVDESHRVFDKMLK--K-NSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAG 95 (337)
Q Consensus 19 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 95 (337)
++...+..+...+.+.|++++|+..|++.+. | +...|..+..++.+.|++++|+..|++..+
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--------------- 67 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA--------------- 67 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------------
Confidence 3444455555555555555555555555422 1 344455555555555555555555555544
Q ss_pred hchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhc-----------CCHHHHHHHHhcCC---CCcHHhHHHHHHHHHh
Q 037592 96 LAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKC-----------GCVDFAHQIFLQMP---VRNLITWNSMISGFAQ 161 (337)
Q Consensus 96 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~ 161 (337)
..+ .+...+..+..++... |++++|+..|++.. +.+...+..+..+|..
T Consensus 68 ----------------~~P-~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~ 130 (217)
T 2pl2_A 68 ----------------RTP-RYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYAL 130 (217)
T ss_dssp ----------------HCT-TCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred ----------------hCC-CcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 322 2333333444444444 55555555555443 2234455555566666
Q ss_pred CCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 037592 162 NGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241 (337)
Q Consensus 162 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 241 (337)
.|++++|+..|++..+.. .+...+..+..++...|++++|...++.+++.. +.+...+..+...+...|++++|..
T Consensus 131 ~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~ 206 (217)
T 2pl2_A 131 LGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA--PKDLDLRVRYASALLLKGKAEEAAR 206 (217)
T ss_dssp TTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTC---------
T ss_pred cCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHccCHHHHHH
Confidence 666666666666666554 455555556666666666666666666665432 3345555666666666666666666
Q ss_pred HHHHh
Q 037592 242 LIENA 246 (337)
Q Consensus 242 ~~~~~ 246 (337)
.|++.
T Consensus 207 ~~~~~ 211 (217)
T 2pl2_A 207 AAALE 211 (217)
T ss_dssp -----
T ss_pred HHHHH
Confidence 66543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.77 E-value=4.8e-16 Score=124.20 Aligned_cols=200 Identities=12% Similarity=0.020 Sum_probs=120.5
Q ss_pred HHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhC
Q 037592 86 FGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP---VRNLITWNSMISGFAQN 162 (337)
Q Consensus 86 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~ 162 (337)
+..+...+...|++++|...++++++..+ .+..++..+..+|...|++++|.+.++++. +.+...+..+...|...
T Consensus 40 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 118 (252)
T 2ho1_A 40 YIQLGLGYLQRGNTEQAKVPLRKALEIDP-SSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQ 118 (252)
T ss_dssp HHHHHHHHHHTTCTGGGHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHH
Confidence 34444555555555555555555555433 345555666666666666666666666554 23455666666666777
Q ss_pred CCHhHHHHHHHHHHhcCCCC-CHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 037592 163 GRGEEALRIFDDMTEGGTKP-DHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241 (337)
Q Consensus 163 ~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 241 (337)
|++++|..+++++.+.+..| +...+..+...+...|++++|...++++++.. +.+...+..++..+...|++++|..
T Consensus 119 g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~ 196 (252)
T 2ho1_A 119 KRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN--RNQPSVALEMADLLYKEREYVPARQ 196 (252)
T ss_dssp TCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCCHHHHHH
Confidence 77777777777666532233 33455556666667777777777777765432 3345666666677777777777777
Q ss_pred HHHHh-cCC-CchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccch
Q 037592 242 LIENA-DCR-HDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLS 288 (337)
Q Consensus 242 ~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 288 (337)
.+++. ... .+...+..+...+...|++++|.+.++++.+..|+++..
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 245 (252)
T 2ho1_A 197 YYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEY 245 (252)
T ss_dssp HHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHH
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHH
Confidence 77653 222 334455556666677777777777777777777765433
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=5.8e-17 Score=128.69 Aligned_cols=206 Identities=12% Similarity=0.059 Sum_probs=113.0
Q ss_pred cHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHh
Q 037592 85 SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP---VRNLITWNSMISGFAQ 161 (337)
Q Consensus 85 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~ 161 (337)
.+..+...+...|++++|...++++++..+ .+..++..+..++...|++++|+..++++. +.+..++..+...|..
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 103 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVV 103 (243)
T ss_dssp -----------------CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence 344445555555556666665555555433 345555556666666666666666666554 2345556666666666
Q ss_pred CCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 037592 162 NGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241 (337)
Q Consensus 162 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 241 (337)
.|++++|...++++.+.. +.+...+..+...+...|++++|...++++++.. +.+...+..++..+...|++++|..
T Consensus 104 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~ 180 (243)
T 2q7f_A 104 KEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN--ENDTEARFQFGMCLANEGMLDEALS 180 (243)
T ss_dssp TTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred hccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHcCCHHHHHH
Confidence 666666666666666543 2244555556666666677777777666665432 3345566666666666666666666
Q ss_pred HHHHh-c-CCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHH
Q 037592 242 LIENA-D-CRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDN 294 (337)
Q Consensus 242 ~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 294 (337)
.+++. . .+.+..++..+..++...|++++|...++++.+..|+++..+..+..
T Consensus 181 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 235 (243)
T 2q7f_A 181 QFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKL 235 (243)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHH
Confidence 66653 1 22234556666666666777777777777777766666555554433
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.1e-15 Score=123.82 Aligned_cols=221 Identities=11% Similarity=-0.054 Sum_probs=92.5
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHhhc-CcccHHHHHHHHHh----hchhhhhHHHHHHHHHhhCCCCchhHHHHHHHH
Q 037592 54 SSSALLQGYCQTGDFESVIRIFREMEEI-DLFSFGIVLRACAG----LAALRLGKEVHCQYIRRSGCKDVIIESALVDLY 128 (337)
Q Consensus 54 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 128 (337)
++..+...+...|++++|+++|++..++ +..++..+...+.. .+++++|...|++..+.+ +...+..+...|
T Consensus 8 a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~ 84 (273)
T 1ouv_A 8 ELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLY 84 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 3344444444444444444444444331 12223333333333 444444444444444332 333444444444
Q ss_pred Hh----cCCHHHHHHHHhcCC-CCcHHhHHHHHHHHHh----CCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhh---
Q 037592 129 AK----CGCVDFAHQIFLQMP-VRNLITWNSMISGFAQ----NGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSH--- 196 (337)
Q Consensus 129 ~~----~g~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~--- 196 (337)
.. .+++++|+..|++.. ..+..++..+...|.. .+++++|+..|++..+.+ +...+..+...+..
T Consensus 85 ~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~ 161 (273)
T 1ouv_A 85 YSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRG 161 (273)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSS
T ss_pred hCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCC
Confidence 44 444444444444433 1233344444444444 455555555555544432 22333333344443
Q ss_pred -cCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHhcCCCchhHHHHHHHHHhc----CCC
Q 037592 197 -MGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGR----AGLLEEAETLIENADCRHDSSLWEVLLGACTT----FRN 267 (337)
Q Consensus 197 -~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~ 267 (337)
.+++++|...+++..+. .+...+..+...|.. .+++++|...|++.-...+...+..+...|.. .++
T Consensus 162 ~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~ 237 (273)
T 1ouv_A 162 TPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRN 237 (273)
T ss_dssp SCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCC
T ss_pred CCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccC
Confidence 44555555555544321 123344444444444 44444444444432111113333334444444 444
Q ss_pred hhHHHHHHHHHHhcCCC
Q 037592 268 AHVAERVAKKIMELKPD 284 (337)
Q Consensus 268 ~~~a~~~~~~~~~~~p~ 284 (337)
+++|...++++.+..|+
T Consensus 238 ~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 238 EKQAIENFKKGCKLGAK 254 (273)
T ss_dssp STTHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHcCCH
Confidence 44444444444444443
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.7e-17 Score=139.84 Aligned_cols=287 Identities=13% Similarity=0.026 Sum_probs=221.5
Q ss_pred CCchHhHHHHHHHHHhcCChHHHHHHHHHccc--C-C----hhhHHHHHHHHHcCCChhHHHHHHHHHhh-----cC---
Q 037592 18 CGNVVVESSLVDMYGKCGLVDESHRVFDKMLK--K-N----SVSSSALLQGYCQTGDFESVIRIFREMEE-----ID--- 82 (337)
Q Consensus 18 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~--- 82 (337)
.+....+..+...+...|++++|+..|+++.. | + ...|..+...+...|++++|...++++.. .+
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 44556677788999999999999999999832 3 2 34688899999999999999999999866 11
Q ss_pred -cccHHHHHHHHHhhchhhhhHHHHHHHHHhhCC-CC----chhHHHHHHHHHhcCC--------------------HHH
Q 037592 83 -LFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC-KD----VIIESALVDLYAKCGC--------------------VDF 136 (337)
Q Consensus 83 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~--------------------~~~ 136 (337)
..++..+...+...|++++|...++++++.... ++ ..++..+...|...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 336777888999999999999999998876432 12 4577888999999999 999
Q ss_pred HHHHHhcCC-----CC----cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCC-CCC----HhHHHHHHHHHhhcCchhh
Q 037592 137 AHQIFLQMP-----VR----NLITWNSMISGFAQNGRGEEALRIFDDMTEGGT-KPD----HVSFIGVLSACSHMGLIDR 202 (337)
Q Consensus 137 A~~~~~~~~-----~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~~~~~~ 202 (337)
|...+++.. .+ ...++..+...|...|++++|...+++..+... .++ ..++..+...+...|++++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 988887764 11 234688889999999999999999999875311 111 2367778888999999999
Q ss_pred HHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHh-------cCCC-chhHHHHHHHHHhcCCChhH
Q 037592 203 GRKHFASMTKEYRIKPK----IEHYNCMVDLLGRAGLLEEAETLIENA-------DCRH-DSSLWEVLLGACTTFRNAHV 270 (337)
Q Consensus 203 a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~-~~~~~~~l~~~~~~~g~~~~ 270 (337)
|...+++++....-.++ ..++..+...|...|++++|...+++. +..+ ...++..+...|...|++++
T Consensus 246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 325 (406)
T 3sf4_A 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ 325 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 99999988653211122 567788899999999999999999863 1111 14467778888999999999
Q ss_pred HHHHHHHHHhcC------CCccchHHHHHHHHHHcCChhh
Q 037592 271 AERVAKKIMELK------PDCHLSYVLLDNVYRAVGRWND 304 (337)
Q Consensus 271 a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~ 304 (337)
|...++++.++. |....++..+...+...|+...
T Consensus 326 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 326 AMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 999999998742 3335578888889988887643
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.9e-15 Score=122.35 Aligned_cols=224 Identities=11% Similarity=-0.085 Sum_probs=193.5
Q ss_pred cccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHh----cCCHHHHHHHHhcCC-CCcHHhHHHHHH
Q 037592 83 LFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAK----CGCVDFAHQIFLQMP-VRNLITWNSMIS 157 (337)
Q Consensus 83 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~-~~~~~~~~~l~~ 157 (337)
..++..+...+...|++++|...|++..+. .+...+..+...|.. .+++++|...|++.. ..+..++..+..
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~ 82 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGN 82 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 346677888899999999999999999983 456788889999999 999999999999876 347788999999
Q ss_pred HHHh----CCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhh----cCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 037592 158 GFAQ----NGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSH----MGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDL 229 (337)
Q Consensus 158 ~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 229 (337)
.|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...++++.+. + +...+..+...
T Consensus 83 ~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 83 LYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGSL 155 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHH
T ss_pred HHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHH
Confidence 9999 999999999999999864 66778888888888 99999999999999653 2 56788888889
Q ss_pred HHh----cCChHHHHHHHHHhcCCCchhHHHHHHHHHhc----CCChhHHHHHHHHHHhcCCCccchHHHHHHHHHH---
Q 037592 230 LGR----AGLLEEAETLIENADCRHDSSLWEVLLGACTT----FRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRA--- 298 (337)
Q Consensus 230 ~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--- 298 (337)
|.. .+++++|...|++.-...+...+..+...|.. .+++++|+..++++.+..| +..+..+..+|..
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~ 233 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEG 233 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSS
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCC
Confidence 988 99999999999985333456778888888888 9999999999999999876 5788899999999
Q ss_pred -cCChhhHHHHHHHHHHhCCc
Q 037592 299 -VGRWNDAFKIRTLMKYSGVK 318 (337)
Q Consensus 299 -~g~~~~A~~~~~~m~~~~~~ 318 (337)
.+++++|...|++..+.|..
T Consensus 234 ~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 234 VTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp SSCCSTTHHHHHHHHHHHTCH
T ss_pred cccCHHHHHHHHHHHHHcCCH
Confidence 99999999999999987754
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.75 E-value=6.3e-17 Score=138.90 Aligned_cols=261 Identities=11% Similarity=0.036 Sum_probs=168.9
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHhh--cCc-----ccHHHHHHHHHhhchhhhhHHHHHHHHHhh-----CCCCchhHH
Q 037592 55 SSALLQGYCQTGDFESVIRIFREMEE--IDL-----FSFGIVLRACAGLAALRLGKEVHCQYIRRS-----GCKDVIIES 122 (337)
Q Consensus 55 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~ 122 (337)
+..+...+...|++++|+.+|+++.+ |+. ..+..+..++...|++++|...++++++.. .+....++.
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 130 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG 130 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence 44455666677777777777777666 332 245566666677777777777777666541 112345666
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCC---------CcHHhHHHHHHHHHhCCC-----------------HhHHHHHHHHHH
Q 037592 123 ALVDLYAKCGCVDFAHQIFLQMPV---------RNLITWNSMISGFAQNGR-----------------GEEALRIFDDMT 176 (337)
Q Consensus 123 ~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~~m~ 176 (337)
.+...|...|++++|...+++... ....++..+...|...|+ +++|+..+++..
T Consensus 131 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al 210 (411)
T 4a1s_A 131 NLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENL 210 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 677777777777777777766541 123456667777777777 777777777654
Q ss_pred hc----CCCC-CHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHh-
Q 037592 177 EG----GTKP-DHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPK----IEHYNCMVDLLGRAGLLEEAETLIENA- 246 (337)
Q Consensus 177 ~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~- 246 (337)
+. +..+ ...++..+...+...|++++|...++++++...-.++ ...+..+...|...|++++|...+++.
T Consensus 211 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 290 (411)
T 4a1s_A 211 KLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTL 290 (411)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 42 1111 1235566667777888888888888777543211112 236677778888888888888887753
Q ss_pred c----CC---CchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCc------cchHHHHHHHHHHcCChhhHHHHHHHHH
Q 037592 247 D----CR---HDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDC------HLSYVLLDNVYRAVGRWNDAFKIRTLMK 313 (337)
Q Consensus 247 ~----~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 313 (337)
. .. ....++..+...+...|++++|...++++.+..+.. ..++..++.+|...|++++|...+++..
T Consensus 291 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 291 ALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 1 11 113456667777888888888888888887743322 3477778888888888888888888776
Q ss_pred Hh
Q 037592 314 YS 315 (337)
Q Consensus 314 ~~ 315 (337)
+.
T Consensus 371 ~~ 372 (411)
T 4a1s_A 371 QL 372 (411)
T ss_dssp HH
T ss_pred HH
Confidence 53
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.75 E-value=8.1e-17 Score=135.89 Aligned_cols=240 Identities=10% Similarity=0.037 Sum_probs=200.2
Q ss_pred ccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCC-HHHHHHHHhcCC---CCcHHhHHHHHHHH
Q 037592 84 FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGC-VDFAHQIFLQMP---VRNLITWNSMISGF 159 (337)
Q Consensus 84 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~---~~~~~~~~~l~~~~ 159 (337)
..|..+..++...|++++|+..++++++..+ .+..+|+.+..++...|+ +++|+..|+++. +.+...|..+..++
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 3577788889999999999999999999876 678899999999999997 999999999987 44678999999999
Q ss_pred HhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-cCChHH
Q 037592 160 AQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGR-AGLLEE 238 (337)
Q Consensus 160 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~ 238 (337)
...|++++|+..|+++++.... +...|..+..++...|++++|+..++++++.. +-+...|+.+..++.. .|..++
T Consensus 177 ~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~--P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED--VRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCcchH
Confidence 9999999999999999986433 66788888899999999999999999998753 4568899999999999 666588
Q ss_pred H-----HHHHHH-hcCCC-chhHHHHHHHHHhcCC--ChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcC---------
Q 037592 239 A-----ETLIEN-ADCRH-DSSLWEVLLGACTTFR--NAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG--------- 300 (337)
Q Consensus 239 A-----~~~~~~-~~~~~-~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g--------- 300 (337)
| +..|++ +...| +...|..+...+...| ++++|++.+.++ +..|+++.++..++.+|.+.|
T Consensus 254 A~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~ 332 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKED 332 (382)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHH
Confidence 7 467776 34444 5667888888888888 689999999998 889998999999999999874
Q ss_pred ChhhHHHHHHHH-HHhCCccCCCCcceeccc
Q 037592 301 RWNDAFKIRTLM-KYSGVKKMPGKSWIEANS 330 (337)
Q Consensus 301 ~~~~A~~~~~~m-~~~~~~~~~~~~~~~~~~ 330 (337)
..++|+.+|+++ .+ +.|.....|.....
T Consensus 333 ~~~~A~~~~~~l~~~--~DP~r~~~w~~~~~ 361 (382)
T 2h6f_A 333 ILNKALELCEILAKE--KDTIRKEYWRYIGR 361 (382)
T ss_dssp HHHHHHHHHHHHHHT--TCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--hCchhHHHHHHHHH
Confidence 258999999987 44 44545556654433
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.2e-16 Score=135.24 Aligned_cols=303 Identities=11% Similarity=0.020 Sum_probs=144.7
Q ss_pred CchhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCCh---HHHHHHHHHcccCChhhHHHHHHHHHcCC-----ChhHHH
Q 037592 1 RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLV---DESHRVFDKMLKKNSVSSSALLQGYCQTG-----DFESVI 72 (337)
Q Consensus 1 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~ 72 (337)
++++|.++|+...+.| +...+..|..+|...|+. ++|...|++..+.++..+..+...+...+ ++++|+
T Consensus 18 ~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~~~A~ 94 (452)
T 3e4b_A 18 DTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEHHEAE 94 (452)
T ss_dssp HHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--CCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCHHHHH
Confidence 3678999999988876 445556677777778888 89999999887667777888888565555 778999
Q ss_pred HHHHHHhh-cCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcC----CHHHHHHHHhcCCCC
Q 037592 73 RIFREMEE-IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCG----CVDFAHQIFLQMPVR 147 (337)
Q Consensus 73 ~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~ 147 (337)
..|++..+ -+...+..+...|...+..+.+...++.+.......+......|...|...+ ..+.+..+++.....
T Consensus 95 ~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~ 174 (452)
T 3e4b_A 95 SLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNT 174 (452)
T ss_dssp HHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcC
Confidence 99999887 3445777777777766654433333332222211122334444555555555 233334444444444
Q ss_pred cHHhHHHHHHHHHhCC---CHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhc----CchhhHHHHHHHHHHhcCCCCCH
Q 037592 148 NLITWNSMISGFAQNG---RGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHM----GLIDRGRKHFASMTKEYRIKPKI 220 (337)
Q Consensus 148 ~~~~~~~l~~~~~~~~---~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~ 220 (337)
++..+..|...|...| +.++|+..|++..+.|.. +...+..+...|... +++++|...|+... +-++
T Consensus 175 ~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-----~g~~ 248 (452)
T 3e4b_A 175 TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-----PGYP 248 (452)
T ss_dssp CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-----GGST
T ss_pred CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-----CCCH
Confidence 4445555555555555 555555555555554422 222223333333332 45555555555542 2233
Q ss_pred HHHHHHHHH-H--HhcCChHHHHHHHHHhcCCCchhHHHHHHHHHhcCC-----ChhHHHHHHHHHHhcCCCccchHHHH
Q 037592 221 EHYNCMVDL-L--GRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFR-----NAHVAERVAKKIMELKPDCHLSYVLL 292 (337)
Q Consensus 221 ~~~~~l~~~-~--~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~a~~~~~~~~~~~p~~~~~~~~l 292 (337)
..+..|... | ...+++++|.+.|++.-...+...+..+...|. .| ++++|+.+|+++. |.++.++..|
T Consensus 249 ~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~L 324 (452)
T 3e4b_A 249 ASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYL 324 (452)
T ss_dssp HHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHH
Confidence 344444444 2 234555555555554322223344444444443 22 5555555555544 4445555555
Q ss_pred HHHHHH----cCChhhHHHHHHHHHHhC
Q 037592 293 DNVYRA----VGRWNDAFKIRTLMKYSG 316 (337)
Q Consensus 293 ~~~~~~----~g~~~~A~~~~~~m~~~~ 316 (337)
+..|.. ..++++|...|++..+.|
T Consensus 325 g~~y~~G~g~~~d~~~A~~~~~~Aa~~g 352 (452)
T 3e4b_A 325 GQIYRRGYLGKVYPQKALDHLLTAARNG 352 (452)
T ss_dssp HHHHHTTTTSSCCHHHHHHHHHHHHTTT
T ss_pred HHHHHCCCCCCcCHHHHHHHHHHHHhhC
Confidence 555444 125555555555544433
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-14 Score=129.26 Aligned_cols=212 Identities=9% Similarity=-0.005 Sum_probs=168.6
Q ss_pred hhHHHHHHHHHhhCCCCchhHHHHHHHHHh-------cCCHH-------HHHHHHhcCCC---C-cHHhHHHHHHHHHhC
Q 037592 101 LGKEVHCQYIRRSGCKDVIIESALVDLYAK-------CGCVD-------FAHQIFLQMPV---R-NLITWNSMISGFAQN 162 (337)
Q Consensus 101 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~A~~~~~~~~~---~-~~~~~~~l~~~~~~~ 162 (337)
++..+|++++...+ .+..+|..++..+.+ .|+++ +|+.+|++... | +...|..++..+.+.
T Consensus 256 ~a~~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 256 RVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 45567777777754 567888888888876 79987 89999998763 4 577899999999999
Q ss_pred CCHhHHHHHHHHHHhcCCCCCH--hHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHhcCChHHH
Q 037592 163 GRGEEALRIFDDMTEGGTKPDH--VSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDL-LGRAGLLEEA 239 (337)
Q Consensus 163 ~~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A 239 (337)
|++++|..+|+++.+. .|+. ..|..++..+.+.|++++|.++|+++++.. +.+...+...+.. +...|+.++|
T Consensus 335 g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~--~~~~~~~~~~a~~~~~~~~~~~~A 410 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYVTAALMEYYCSKDKSVA 410 (530)
T ss_dssp TCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT--TCCTHHHHHHHHHHHHHTCCHHHH
T ss_pred CCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc--CCchHHHHHHHHHHHHHcCChhHH
Confidence 9999999999999984 5543 478888888888999999999999997532 2233444333322 3468999999
Q ss_pred HHHHHHh-cCCC-chhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccc----hHHHHHHHHHHcCChhhHHHHHHHHH
Q 037592 240 ETLIENA-DCRH-DSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHL----SYVLLDNVYRAVGRWNDAFKIRTLMK 313 (337)
Q Consensus 240 ~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~m~ 313 (337)
..+|++. ...| +...|..++..+.+.|+.+.|..+|+++....|.++. .|...+......|+.+.+..+++++.
T Consensus 411 ~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~ 490 (530)
T 2ooe_A 411 FKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 490 (530)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999973 3334 5678999999999999999999999999998776554 78888888889999999999999988
Q ss_pred HhCC
Q 037592 314 YSGV 317 (337)
Q Consensus 314 ~~~~ 317 (337)
+.-.
T Consensus 491 ~~~p 494 (530)
T 2ooe_A 491 TAFR 494 (530)
T ss_dssp HHTH
T ss_pred HHCc
Confidence 7554
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.4e-16 Score=136.27 Aligned_cols=265 Identities=12% Similarity=0.059 Sum_probs=208.9
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHHhh--cCc-----ccHHHHHHHHHhhchhhhhHHHHHHHHHhhCC-----CCc
Q 037592 51 NSVSSSALLQGYCQTGDFESVIRIFREMEE--IDL-----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGC-----KDV 118 (337)
Q Consensus 51 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~ 118 (337)
....+......+...|++++|+.+|+++.+ |+. .++..+...+...|++++|...+++++..... ...
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 445567788899999999999999999988 443 46778889999999999999999998765311 225
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhcCCC-----Cc----HHhHHHHHHHHHhCCC--------------------HhHHH
Q 037592 119 IIESALVDLYAKCGCVDFAHQIFLQMPV-----RN----LITWNSMISGFAQNGR--------------------GEEAL 169 (337)
Q Consensus 119 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~--------------------~~~a~ 169 (337)
.++..+...|...|++++|...+++... ++ ..++..+...|...|+ +++|.
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 6778889999999999999999988761 12 3478888999999999 99999
Q ss_pred HHHHHHHhc----CCCC-CHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCChHHHH
Q 037592 170 RIFDDMTEG----GTKP-DHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPK----IEHYNCMVDLLGRAGLLEEAE 240 (337)
Q Consensus 170 ~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~ 240 (337)
..+++..+. +..| ...++..+...+...|++++|...++++++...-.++ ..++..+...|...|++++|.
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 999887543 1111 1246677788899999999999999998654222222 347888899999999999999
Q ss_pred HHHHHh-c---CCCc----hhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCc------cchHHHHHHHHHHcCChhhHH
Q 037592 241 TLIENA-D---CRHD----SSLWEVLLGACTTFRNAHVAERVAKKIMELKPDC------HLSYVLLDNVYRAVGRWNDAF 306 (337)
Q Consensus 241 ~~~~~~-~---~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~ 306 (337)
..+++. . ..++ ..++..+...+...|++++|...++++.+..+.. ..++..++.+|...|++++|.
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 327 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM 327 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999863 1 1111 4567778888999999999999999998854332 457889999999999999999
Q ss_pred HHHHHHHHh
Q 037592 307 KIRTLMKYS 315 (337)
Q Consensus 307 ~~~~~m~~~ 315 (337)
..+++..+.
T Consensus 328 ~~~~~al~~ 336 (406)
T 3sf4_A 328 HFAEKHLEI 336 (406)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999987654
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-15 Score=119.66 Aligned_cols=194 Identities=12% Similarity=0.017 Sum_probs=88.0
Q ss_pred HHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhC-CCH
Q 037592 90 LRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP---VRNLITWNSMISGFAQN-GRG 165 (337)
Q Consensus 90 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~-~~~ 165 (337)
...+...|++++|...++++++..+ .+..++..+..+|...|++++|...++++. +.+..++..+...|... |++
T Consensus 15 ~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 93 (225)
T 2vq2_A 15 AMEYMRGQDYRQATASIEDALKSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRP 93 (225)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcH
Confidence 3333334444444444444433322 233344444444444444444444444433 22334444455555555 555
Q ss_pred hHHHHHHHHHHhcCCCCC-HhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 037592 166 EEALRIFDDMTEGGTKPD-HVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIE 244 (337)
Q Consensus 166 ~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 244 (337)
++|...++++.+.+..|+ ...+..+...+...|++++|...++++++.. +.+...+..++..+...|++++|...++
T Consensus 94 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~ 171 (225)
T 2vq2_A 94 AESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ--PQFPPAFKELARTKMLAGQLGDADYYFK 171 (225)
T ss_dssp HHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCchHHHHHHHHHHHcCCHHHHHHHHH
Confidence 555555555544211222 2334444445555555555555555554321 2234445555555555555555555554
Q ss_pred Hh-cCC--CchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCcc
Q 037592 245 NA-DCR--HDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCH 286 (337)
Q Consensus 245 ~~-~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 286 (337)
+. ... .+...+..+...+...|+.+.+..+++.+.+..|+++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 216 (225)
T 2vq2_A 172 KYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSE 216 (225)
T ss_dssp HHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCH
Confidence 42 111 2333344444444555555555555555555555543
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-16 Score=132.85 Aligned_cols=267 Identities=12% Similarity=0.038 Sum_probs=155.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHccc--C-C----hhhHHHHHHHHHcCCChhHHHHHHHHHhh-----cC----cccH
Q 037592 23 VESSLVDMYGKCGLVDESHRVFDKMLK--K-N----SVSSSALLQGYCQTGDFESVIRIFREMEE-----ID----LFSF 86 (337)
Q Consensus 23 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~ 86 (337)
.+......+...|++++|+..|+++.. | + ...+..+...+...|++++|.+++++..+ ++ ..++
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 344455666677777777777776622 2 2 24456666667777777777777766543 11 1233
Q ss_pred HHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCC--
Q 037592 87 GIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGR-- 164 (337)
Q Consensus 87 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~-- 164 (337)
..+...+...|++++|...+++.++........ .....++..+...|...|+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------------------------~~~~~~~~~l~~~~~~~~~~~ 140 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK--------------------------VGEARALYNLGNVYHAKGKSF 140 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH--------------------------HHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCc--------------------------hHHHHHHHHHHHHHHHcCccc
Confidence 344444444444444444444444332110000 0001244455555555555
Q ss_pred ------------------HhHHHHHHHHHHhc----CCCC-CHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCC--
Q 037592 165 ------------------GEEALRIFDDMTEG----GTKP-DHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPK-- 219 (337)
Q Consensus 165 ------------------~~~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-- 219 (337)
+++|...+++.... +..| ....+..+...+...|++++|...++++++...-.++
T Consensus 141 ~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 220 (338)
T 3ro2_A 141 GCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKA 220 (338)
T ss_dssp SSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred ccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChH
Confidence 56666555554321 1111 1234555666677777788777777776543211111
Q ss_pred --HHHHHHHHHHHHhcCChHHHHHHHHHh-c---CCCc----hhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCc----
Q 037592 220 --IEHYNCMVDLLGRAGLLEEAETLIENA-D---CRHD----SSLWEVLLGACTTFRNAHVAERVAKKIMELKPDC---- 285 (337)
Q Consensus 220 --~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---- 285 (337)
..++..+...+...|++++|...+++. . ..++ ..++..+...+...|++++|...++++.+..|..
T Consensus 221 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 300 (338)
T 3ro2_A 221 AERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRI 300 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcH
Confidence 236677777888888888888887753 1 1111 3456667777888888888888888887744332
Q ss_pred --cchHHHHHHHHHHcCChhhHHHHHHHHHHh
Q 037592 286 --HLSYVLLDNVYRAVGRWNDAFKIRTLMKYS 315 (337)
Q Consensus 286 --~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 315 (337)
..++..++.+|...|++++|...+++..+.
T Consensus 301 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 301 GEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 336778888888899999999998887764
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.8e-17 Score=150.07 Aligned_cols=114 Identities=11% Similarity=0.054 Sum_probs=104.4
Q ss_pred HHhHHHHHHHHHhCCCHhHHHHHHHHHHh---cCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHH
Q 037592 149 LITWNSMISGFAQNGRGEEALRIFDDMTE---GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNC 225 (337)
Q Consensus 149 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~---~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 225 (337)
..+|++||.+|++.|+.++|.++|++|.+ .|+.||..|||++|.+||+.|++++|.++|++| ...|+.||..||++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM-~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMV-KDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHH-HHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHH-HHcCCCCcHHHHHH
Confidence 46899999999999999999999988764 589999999999999999999999999999999 56699999999999
Q ss_pred HHHHHHhcCCh-HHHHHHHHHh---cCCCchhHHHHHHHHHh
Q 037592 226 MVDLLGRAGLL-EEAETLIENA---DCRHDSSLWEVLLGACT 263 (337)
Q Consensus 226 l~~~~~~~g~~-~~A~~~~~~~---~~~~~~~~~~~l~~~~~ 263 (337)
+|.++++.|+. ++|.++|++| |..||..+|+.++.++.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~e 247 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEED 247 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhh
Confidence 99999999985 7899999987 79999999998885543
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-16 Score=129.32 Aligned_cols=237 Identities=8% Similarity=-0.116 Sum_probs=173.1
Q ss_pred HHhcCChHHHHHHHHHcccC-------ChhhHHHHHHHHHcCCChhHHHHHHHHHhh--c-CcccHHHHHHHHHhhchhh
Q 037592 31 YGKCGLVDESHRVFDKMLKK-------NSVSSSALLQGYCQTGDFESVIRIFREMEE--I-DLFSFGIVLRACAGLAALR 100 (337)
Q Consensus 31 ~~~~~~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~ 100 (337)
+...|++++|+..|+++... +..+|..++..+...|++++|+..|+++.+ | +..++..+..++...|+++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHH
Confidence 34567888888888887542 356678888888888999999998888887 3 3567788888888889999
Q ss_pred hhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC--CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhc
Q 037592 101 LGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP--VRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178 (337)
Q Consensus 101 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 178 (337)
+|...++++++..+ .+..++..+..+|.+.|++++|...|+++. .|+.......+..+...|++++|...+++....
T Consensus 95 ~A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 95 AAYEAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCc-cccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 99999988888754 567888888899999999999999988876 444444444444556678999999999887775
Q ss_pred CCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHh-cCCCch
Q 037592 179 GTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPK-----IEHYNCMVDLLGRAGLLEEAETLIENA-DCRHDS 252 (337)
Q Consensus 179 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~ 252 (337)
. +++...+ .++..+...++.++|...++.++.. .|+ ..++..++..|...|++++|...|++. ...|+.
T Consensus 174 ~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 248 (275)
T 1xnf_A 174 S-DKEQWGW-NIVEFYLGNISEQTLMERLKADATD---NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN 248 (275)
T ss_dssp S-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCS---HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT
T ss_pred C-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcc---cccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh
Confidence 3 3343444 3666677778888888888887532 232 577888899999999999999999874 455533
Q ss_pred hHHHHHHHHHhcCCChhHHHHHH
Q 037592 253 SLWEVLLGACTTFRNAHVAERVA 275 (337)
Q Consensus 253 ~~~~~l~~~~~~~g~~~~a~~~~ 275 (337)
+.....++...|++++|++.+
T Consensus 249 --~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 --FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --CHHHHHHHHHHHHHHHC----
T ss_pred --HHHHHHHHHHHHHHHhhHHHH
Confidence 233345667778888877665
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.74 E-value=9.4e-16 Score=122.48 Aligned_cols=198 Identities=9% Similarity=-0.069 Sum_probs=172.4
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHH
Q 037592 118 VIIESALVDLYAKCGCVDFAHQIFLQMP---VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSAC 194 (337)
Q Consensus 118 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 194 (337)
...+..+...+...|++++|...|+++. +.+...+..+...|...|++++|...|+++.+... .+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHH
Confidence 5677888999999999999999999876 44678899999999999999999999999988643 3667788888999
Q ss_pred hhcCchhhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHh-c-CCCchhHHHHHHHHHhcCCChhHH
Q 037592 195 SHMGLIDRGRKHFASMTKEYRIKP-KIEHYNCMVDLLGRAGLLEEAETLIENA-D-CRHDSSLWEVLLGACTTFRNAHVA 271 (337)
Q Consensus 195 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a 271 (337)
...|++++|.+++++++. .+..| +...+..++..+...|++++|...+++. . .+.+...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999965 22344 5678888999999999999999999974 2 233567788888999999999999
Q ss_pred HHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCC
Q 037592 272 ERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGV 317 (337)
Q Consensus 272 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 317 (337)
...++++.+..|++...+..++..+...|++++|.++++++.+...
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p 240 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP 240 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 9999999999999889999999999999999999999999988653
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.2e-15 Score=119.47 Aligned_cols=199 Identities=11% Similarity=-0.055 Sum_probs=171.5
Q ss_pred CCchhHHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHH
Q 037592 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMP---VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLS 192 (337)
Q Consensus 116 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 192 (337)
.+..++..+...+...|++++|+..|+++. +.+...+..+...|...|++++|...++++.+.. +.+..++..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 356778889999999999999999999876 4467789999999999999999999999998863 236677888889
Q ss_pred HHhhc-CchhhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHh-cCC-CchhHHHHHHHHHhcCCCh
Q 037592 193 ACSHM-GLIDRGRKHFASMTKEYRIKP-KIEHYNCMVDLLGRAGLLEEAETLIENA-DCR-HDSSLWEVLLGACTTFRNA 268 (337)
Q Consensus 193 ~~~~~-~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~ 268 (337)
.+... |++++|...++.+++ .+..| +...+..++.++...|++++|...+++. ... .+...+..+...+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCH
Confidence 99999 999999999999976 22334 3678889999999999999999999874 333 3467788888999999999
Q ss_pred hHHHHHHHHHHhcCC-CccchHHHHHHHHHHcCChhhHHHHHHHHHHhC
Q 037592 269 HVAERVAKKIMELKP-DCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSG 316 (337)
Q Consensus 269 ~~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 316 (337)
++|...++++.+..| +++..+..+...+...|+.++|..+++.+.+..
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 999999999999999 888889888999999999999999999987754
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.1e-16 Score=135.59 Aligned_cols=263 Identities=10% Similarity=0.015 Sum_probs=206.5
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHccc--C-Ch----hhHHHHHHHHHcCCChhHHHHHHHHHhh---------cCccc
Q 037592 22 VVESSLVDMYGKCGLVDESHRVFDKMLK--K-NS----VSSSALLQGYCQTGDFESVIRIFREMEE---------IDLFS 85 (337)
Q Consensus 22 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~ 85 (337)
..+..+...+...|++++|+..|+++.. | +. ..|..+...|...|++++|++.++++.+ ....+
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 4455677888999999999999999843 3 22 4688899999999999999999999876 12346
Q ss_pred HHHHHHHHHhhchhhhhHHHHHHHHHhhC-----CCCchhHHHHHHHHHhcCC-----------------HHHHHHHHhc
Q 037592 86 FGIVLRACAGLAALRLGKEVHCQYIRRSG-----CKDVIIESALVDLYAKCGC-----------------VDFAHQIFLQ 143 (337)
Q Consensus 86 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~-----------------~~~A~~~~~~ 143 (337)
+..+...+...|++++|...++++++... .....++..+...|...|+ +++|+..+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 77888899999999999999999887631 1235678889999999999 9999998887
Q ss_pred CCC-----C----cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCC-CC----HhHHHHHHHHHhhcCchhhHHHHHHH
Q 037592 144 MPV-----R----NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK-PD----HVSFIGVLSACSHMGLIDRGRKHFAS 209 (337)
Q Consensus 144 ~~~-----~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~~ 209 (337)
... . ...++..+...|...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 651 1 2347888899999999999999999998764111 11 12677788899999999999999998
Q ss_pred HHHhcCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHh-------cCC-CchhHHHHHHHHHhcCCChhHHHHHHHH
Q 037592 210 MTKEYRIKP----KIEHYNCMVDLLGRAGLLEEAETLIENA-------DCR-HDSSLWEVLLGACTTFRNAHVAERVAKK 277 (337)
Q Consensus 210 ~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 277 (337)
++....-.. ...++..+...|...|++++|...+++. +.. ....++..+...|...|++++|...+++
T Consensus 289 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 368 (411)
T 4a1s_A 289 TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQ 368 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 865421111 1567888999999999999999999863 111 1234677788889999999999999999
Q ss_pred HHhcCCC
Q 037592 278 IMELKPD 284 (337)
Q Consensus 278 ~~~~~p~ 284 (337)
+.++.+.
T Consensus 369 al~~~~~ 375 (411)
T 4a1s_A 369 HLQLAXX 375 (411)
T ss_dssp HHHHCCH
T ss_pred HHHHHhh
Confidence 9987665
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.2e-14 Score=135.84 Aligned_cols=252 Identities=11% Similarity=0.027 Sum_probs=201.7
Q ss_pred hcCChHHHHHHHHHcccCChhhHHHHHHHHHcCCChhHHHHHHHHHhhcCcccHHHHHHHHHhhchhhhhHHHHHHHHHh
Q 037592 33 KCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRR 112 (337)
Q Consensus 33 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 112 (337)
..+++++|.++.+++ .+..+|..+..++...|++++|++.|.+. .|...|..++.++.+.|++++|.+++...++.
T Consensus 1088 ~i~nldrAiE~Aerv--n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~ 1163 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKK 1163 (1630)
T ss_pred HHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 566777777777665 34778889999999999999999999775 66777888999999999999999999988876
Q ss_pred hCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHH
Q 037592 113 SGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLS 192 (337)
Q Consensus 113 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 192 (337)
. +++.+.+.++.+|++.+++++...+. ..++...|..+...|...|++++|..+|... ..|..+..
T Consensus 1164 ~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~ 1229 (1630)
T 1xi4_A 1164 A--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLAS 1229 (1630)
T ss_pred c--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHH
Confidence 5 33334445889999999988655443 3556677778999999999999999999885 37888999
Q ss_pred HHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhcCCCchhHHHHHHHHHhcCCChhHHH
Q 037592 193 ACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAE 272 (337)
Q Consensus 193 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 272 (337)
++.+.|+++.|.+.++++ .+..+|..+..+|...|++..|......+.. ++..+..++..|.+.|.+++|+
T Consensus 1230 tLvkLge~q~AIEaarKA-------~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv--~~deLeeli~yYe~~G~feEAI 1300 (1630)
T 1xi4_A 1230 TLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV--HADELEELINYYQDRGYFEELI 1300 (1630)
T ss_pred HHHHhCCHHHHHHHHHHh-------CCHHHHHHHHHHHhhhhHHHHHHHHHHhhhc--CHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999998876 3457899899999999999999988775433 4555778899999999999999
Q ss_pred HHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHH
Q 037592 273 RVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLM 312 (337)
Q Consensus 273 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 312 (337)
.+++..+.++|.+...|..|..+|.+. ++++.++.++..
T Consensus 1301 ~LlE~aL~LeraH~gmftELaiLyaKy-~peklmEhlk~f 1339 (1630)
T 1xi4_A 1301 TMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLELF 1339 (1630)
T ss_pred HHHHHHhccChhHhHHHHHHHHHHHhC-CHHHHHHHHHHH
Confidence 999999999999888888888888774 344444444333
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=4e-16 Score=123.82 Aligned_cols=199 Identities=10% Similarity=0.033 Sum_probs=156.4
Q ss_pred CCchhHHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHH
Q 037592 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMP---VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLS 192 (337)
Q Consensus 116 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 192 (337)
.....+..+...+...|++++|...|+++. +.+...+..+...|...|++++|...++++.+... .+...+..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHH
Confidence 356677788889999999999999999876 34678899999999999999999999999988632 36677888889
Q ss_pred HHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-c-CCCchhHHHHHHHHHhcCCChhH
Q 037592 193 ACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-D-CRHDSSLWEVLLGACTTFRNAHV 270 (337)
Q Consensus 193 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~ 270 (337)
.+...|++++|.+.++++++.. +.+...+..++..+...|++++|...+++. . .+.+...+..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999997653 556788999999999999999999999974 2 33456778888899999999999
Q ss_pred HHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCC
Q 037592 271 AERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGV 317 (337)
Q Consensus 271 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 317 (337)
|+..++++.+..|+++.++..++.+|...|++++|...++++.+...
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 224 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP 224 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCc
Confidence 99999999999999999999999999999999999999999988554
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.72 E-value=6e-16 Score=128.61 Aligned_cols=256 Identities=12% Similarity=0.047 Sum_probs=160.3
Q ss_pred CchhhHHHHHHHHhcCCCCc----hHhHHHHHHHHHhcCChHHHHHHHHHcccC---------ChhhHHHHHHHHHcCCC
Q 037592 1 RLKQGKEVHAKVITLGLCGN----VVVESSLVDMYGKCGLVDESHRVFDKMLKK---------NSVSSSALLQGYCQTGD 67 (337)
Q Consensus 1 ~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~g~ 67 (337)
++++|...|+.+.+.+ +.+ ..++..+...+...|++++|...+++.... ...++..+...+...|+
T Consensus 20 ~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 98 (338)
T 3ro2_A 20 DCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGN 98 (338)
T ss_dssp CHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccC
Confidence 4789999999999974 223 367888999999999999999999887321 25568889999999999
Q ss_pred hhHHHHHHHHHhh-----cC----cccHHHHHHHHHhhch--------------------hhhhHHHHHHHHHhhCC-CC
Q 037592 68 FESVIRIFREMEE-----ID----LFSFGIVLRACAGLAA--------------------LRLGKEVHCQYIRRSGC-KD 117 (337)
Q Consensus 68 ~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~~~~~~-~~ 117 (337)
+++|.+.+++..+ ++ ..++..+...+...|+ +++|...+++.+..... ++
T Consensus 99 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~ 178 (338)
T 3ro2_A 99 FDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGD 178 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999877 22 2266777778888888 67777766665443110 00
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcC----CCC-CHhHHHHHHH
Q 037592 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG----TKP-DHVSFIGVLS 192 (337)
Q Consensus 118 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~----~~p-~~~~~~~l~~ 192 (337)
.. ....++..+...|...|++++|...+++..+.. ..+ ...++..+..
T Consensus 179 ~~---------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~ 231 (338)
T 3ro2_A 179 RA---------------------------AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGN 231 (338)
T ss_dssp HH---------------------------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HH---------------------------HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 00 011234444445555555555555555443320 000 1124455555
Q ss_pred HHhhcCchhhHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHh-------cCCC-chhHHHHHHH
Q 037592 193 ACSHMGLIDRGRKHFASMTKEYRIKPK----IEHYNCMVDLLGRAGLLEEAETLIENA-------DCRH-DSSLWEVLLG 260 (337)
Q Consensus 193 ~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~-~~~~~~~l~~ 260 (337)
.+...|++++|...+++.+....-..+ ..++..+...|...|++++|...+++. +..+ ...++..+..
T Consensus 232 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~ 311 (338)
T 3ro2_A 232 AYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGN 311 (338)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 666666666666666665432111111 345566667777777777777777653 1111 1334556667
Q ss_pred HHhcCCChhHHHHHHHHHHhcCCC
Q 037592 261 ACTTFRNAHVAERVAKKIMELKPD 284 (337)
Q Consensus 261 ~~~~~g~~~~a~~~~~~~~~~~p~ 284 (337)
.+...|++++|...++++.++.+.
T Consensus 312 ~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 312 AYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHcCChHHHHHHHHHHHHHHHh
Confidence 777888888888888887776554
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.4e-16 Score=137.63 Aligned_cols=210 Identities=7% Similarity=-0.047 Sum_probs=178.2
Q ss_pred hhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCH-HHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHHHHH
Q 037592 98 ALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCV-DFAHQIFLQMP---VRNLITWNSMISGFAQNGRGEEALRIFD 173 (337)
Q Consensus 98 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 173 (337)
.++++...+++.....+ .+...+..+..++...|++ ++|++.|++.. +.+..+|..+..+|...|++++|...|+
T Consensus 83 ~~~~al~~l~~~~~~~~-~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQ-VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHTTCC-CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 35566666666554432 5678888899999999999 99999998876 3457889999999999999999999999
Q ss_pred HHHhcCCCCCHhHHHHHHHHHhhc---------CchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc--------CCh
Q 037592 174 DMTEGGTKPDHVSFIGVLSACSHM---------GLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRA--------GLL 236 (337)
Q Consensus 174 ~m~~~~~~p~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~ 236 (337)
+..+. .|+...+..+...+... |++++|...++++++.. +.+...|..+..+|... |++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--VLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 99885 56778888888889999 99999999999997653 45688899999999988 999
Q ss_pred HHHHHHHHHh-cCCC----chhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHH
Q 037592 237 EEAETLIENA-DCRH----DSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTL 311 (337)
Q Consensus 237 ~~A~~~~~~~-~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (337)
++|...|++. ...| +...|..+..+|...|++++|+..|+++.+++|+++.++..+..++...|++++|++.+.+
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999974 3344 6778899999999999999999999999999999999999999999999999999976654
Q ss_pred H
Q 037592 312 M 312 (337)
Q Consensus 312 m 312 (337)
+
T Consensus 318 ~ 318 (474)
T 4abn_A 318 T 318 (474)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.70 E-value=3.2e-14 Score=133.10 Aligned_cols=263 Identities=13% Similarity=0.101 Sum_probs=213.8
Q ss_pred chHhHHHHHHHHHhcCChHHHHHHHHHcccCChhhHHHHHHHHHcCCChhHHHHHHHHHhh--cCcccHHHHHHHHHhhc
Q 037592 20 NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEE--IDLFSFGIVLRACAGLA 97 (337)
Q Consensus 20 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~ 97 (337)
+..+|..+..++...|++++|++.|.+. .|...|..++.++.+.|++++|+++|....+ ++......++.+|++.+
T Consensus 1104 ~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~ 1181 (1630)
T 1xi4_A 1104 EPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTN 1181 (1630)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhc
Confidence 5778999999999999999999999775 6788899999999999999999999998887 55555667999999998
Q ss_pred hhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHh
Q 037592 98 ALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177 (337)
Q Consensus 98 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 177 (337)
+++....+ ++ .++...+..+...|...|++++|..+|... ..|..++.+|.+.|++++|.+.+++.
T Consensus 1182 rleele~f----I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA-- 1247 (1630)
T 1xi4_A 1182 RLAELEEF----IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA-- 1247 (1630)
T ss_pred CHHHHHHH----Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh--
Confidence 88854444 22 256667778999999999999999999985 58999999999999999999999987
Q ss_pred cCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH-hcCCC-chhHH
Q 037592 178 GGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIEN-ADCRH-DSSLW 255 (337)
Q Consensus 178 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~-~~~~~ 255 (337)
.+..+|..+..+|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++. ++..+ ....|
T Consensus 1248 ----~n~~aWkev~~acve~~Ef~LA~~cgl~I------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmf 1317 (1630)
T 1xi4_A 1248 ----NSTRTWKEVCFACVDGKEFRLAQMCGLHI------VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMF 1317 (1630)
T ss_pred ----CCHHHHHHHHHHHhhhhHHHHHHHHHHhh------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHH
Confidence 25588998999999999999998866543 34566777999999999999999999986 34443 34456
Q ss_pred HHHHHHHh--cCCChhHHHHHHHHHHhcCC-----CccchHHHHHHHHHHcCChhhHHHH
Q 037592 256 EVLLGACT--TFRNAHVAERVAKKIMELKP-----DCHLSYVLLDNVYRAVGRWNDAFKI 308 (337)
Q Consensus 256 ~~l~~~~~--~~g~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~~ 308 (337)
+-+...|+ +-++..++.+.|..-..+.| .+...|..++..|.+.|+++.|...
T Consensus 1318 tELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1318 TELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 55555554 44566666777766555555 4567899999999999999999843
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.3e-15 Score=127.98 Aligned_cols=285 Identities=9% Similarity=-0.044 Sum_probs=203.1
Q ss_pred HHhcCChHHHHHHHHHccc------C--ChhhHHHHHHH--HHcCCChhHHH-----------HHHHHHhh-cCc-c---
Q 037592 31 YGKCGLVDESHRVFDKMLK------K--NSVSSSALLQG--YCQTGDFESVI-----------RIFREMEE-IDL-F--- 84 (337)
Q Consensus 31 ~~~~~~~~~A~~~~~~~~~------~--~~~~~~~l~~~--~~~~g~~~~A~-----------~~~~~~~~-~~~-~--- 84 (337)
+.+.+++++|..+++++.. . +...|..++.. ..-.++.+.+. +.++.+.. ++. .
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 4678999999999988721 2 23333443322 12223333444 66666644 111 1
Q ss_pred ---cHHHHHHHHHhhchhhhhHHHHHHHHHhhCC-C----CchhHHHHHHHHHhcCCHHHHHHHHhcCC-----CCc---
Q 037592 85 ---SFGIVLRACAGLAALRLGKEVHCQYIRRSGC-K----DVIIESALVDLYAKCGCVDFAHQIFLQMP-----VRN--- 148 (337)
Q Consensus 85 ---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~--- 148 (337)
.+......+...|++++|...++++++.... + ...++..+..+|...|++++|+..+++.. .++
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 181 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI 181 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence 1223566778899999999999999875211 2 34678889999999999999999888766 121
Q ss_pred --HHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCC-CC----HhHHHHHHHHHhhcCchhhHHHHHHHHHHhc---CC-C
Q 037592 149 --LITWNSMISGFAQNGRGEEALRIFDDMTEGGTK-PD----HVSFIGVLSACSHMGLIDRGRKHFASMTKEY---RI-K 217 (337)
Q Consensus 149 --~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~-~ 217 (337)
..+++.+...|...|++++|...|++..+.... ++ ..++..+...|...|++++|...++++++-. +. +
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 261 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP 261 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch
Confidence 357888899999999999999999988753111 11 1367778889999999999999999986521 22 3
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHh-------cCCCchhHHHHHHHHHhcCCC---hhHHHHHHHHHHhcCCCccc
Q 037592 218 PKIEHYNCMVDLLGRAGLLEEAETLIENA-------DCRHDSSLWEVLLGACTTFRN---AHVAERVAKKIMELKPDCHL 287 (337)
Q Consensus 218 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~ 287 (337)
....++..+..+|...|++++|...+++. +.+.....+..+...+...|+ +++|+.++++. ...|....
T Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~ 340 (383)
T 3ulq_A 262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLED 340 (383)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHH
Confidence 34677889999999999999999999863 122222335666777889998 77777777766 33344456
Q ss_pred hHHHHHHHHHHcCChhhHHHHHHHHHHhC
Q 037592 288 SYVLLDNVYRAVGRWNDAFKIRTLMKYSG 316 (337)
Q Consensus 288 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 316 (337)
.+..++..|...|++++|...+++..+..
T Consensus 341 ~~~~la~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 341 FAIDVAKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 78899999999999999999999987643
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.69 E-value=1.1e-14 Score=110.41 Aligned_cols=166 Identities=11% Similarity=0.077 Sum_probs=132.6
Q ss_pred cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 037592 148 NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMV 227 (337)
Q Consensus 148 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 227 (337)
+...|..+...|...|++++|+..|++..+..+. +..++..+..++.+.|++++|...+..+.... +.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD--TTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--chhHHHHHHHH
Confidence 4567888888888888888888888888875322 55677777788888888888888888886542 44566777778
Q ss_pred HHHHhcCChHHHHHHHHHh-c-CCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhH
Q 037592 228 DLLGRAGLLEEAETLIENA-D-CRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDA 305 (337)
Q Consensus 228 ~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 305 (337)
..+...++++.|...+++. . .+.+...+..+...+.+.|++++|++.|+++++.+|+++.+|..++.+|.+.|++++|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 8888888888888888764 2 2335666777888888999999999999999999999888999999999999999999
Q ss_pred HHHHHHHHHhC
Q 037592 306 FKIRTLMKYSG 316 (337)
Q Consensus 306 ~~~~~~m~~~~ 316 (337)
+..|++..+..
T Consensus 161 ~~~~~~al~~~ 171 (184)
T 3vtx_A 161 VKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHhCC
Confidence 99998887743
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.68 E-value=7.4e-15 Score=124.90 Aligned_cols=281 Identities=9% Similarity=-0.013 Sum_probs=206.8
Q ss_pred CchhhHHHHHHHHhc--CC--CCchHhHHHHHHHH--HhcCChHHHH-----------HHHHHccc-C-Chh------hH
Q 037592 1 RLKQGKEVHAKVITL--GL--CGNVVVESSLVDMY--GKCGLVDESH-----------RVFDKMLK-K-NSV------SS 55 (337)
Q Consensus 1 ~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~--~~~~~~~~A~-----------~~~~~~~~-~-~~~------~~ 55 (337)
++++|..+++++.+. .. .++...|-.++..- .-.++++.+. +.++.+.. + +.. .+
T Consensus 27 ~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l~~~~~ 106 (383)
T 3ulq_A 27 SIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLEYYFN 106 (383)
T ss_dssp CHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHHHHHHH
Confidence 467889998888664 22 33444445554321 2233444444 56655521 1 111 22
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHhh-----cC----cccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCC------chh
Q 037592 56 SALLQGYCQTGDFESVIRIFREMEE-----ID----LFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD------VII 120 (337)
Q Consensus 56 ~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~ 120 (337)
......+...|++++|++.|++..+ +| ..++..+..++...|++++|...+++.++...... ..+
T Consensus 107 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 186 (383)
T 3ulq_A 107 FFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQC 186 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHH
Confidence 3366778899999999999999977 32 24688889999999999999999999988643222 357
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCC-----CCc----HHhHHHHHHHHHhCCCHhHHHHHHHHHHhc----CC-CCCHhH
Q 037592 121 ESALVDLYAKCGCVDFAHQIFLQMP-----VRN----LITWNSMISGFAQNGRGEEALRIFDDMTEG----GT-KPDHVS 186 (337)
Q Consensus 121 ~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~-~p~~~~ 186 (337)
++.+..+|...|++++|+..|++.. .++ ..++..+...|...|++++|+..|++..+. +. +....+
T Consensus 187 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 266 (383)
T 3ulq_A 187 HSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQA 266 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHH
Confidence 8889999999999999999998876 122 247888999999999999999999998772 23 334557
Q ss_pred HHHHHHHHhhcCchhhHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHhcCCCch-hHHHHHH
Q 037592 187 FIGVLSACSHMGLIDRGRKHFASMTKEYR---IKPKIEHYNCMVDLLGRAGL---LEEAETLIENADCRHDS-SLWEVLL 259 (337)
Q Consensus 187 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~-~~~~~l~ 259 (337)
+..+...+.+.|++++|...+++.++... .+.....+..+...|...|+ +++|..++++.+..|+. ..+..+.
T Consensus 267 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la 346 (383)
T 3ulq_A 267 YFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVA 346 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 78888999999999999999998865321 11223345678888889999 89999999988655543 3566777
Q ss_pred HHHhcCCChhHHHHHHHHHHhc
Q 037592 260 GACTTFRNAHVAERVAKKIMEL 281 (337)
Q Consensus 260 ~~~~~~g~~~~a~~~~~~~~~~ 281 (337)
..|...|++++|...++++.++
T Consensus 347 ~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 347 KYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHH
Confidence 8899999999999999999873
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.1e-13 Score=120.01 Aligned_cols=301 Identities=10% Similarity=-0.042 Sum_probs=189.2
Q ss_pred chhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcC-----ChHHHHHHHHHcccC-ChhhHHHHHHHHHcCCChhHH---H
Q 037592 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCG-----LVDESHRVFDKMLKK-NSVSSSALLQGYCQTGDFESV---I 72 (337)
Q Consensus 2 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A---~ 72 (337)
+++|...|+...+. +...+..|..++...+ ++++|+..|++...+ +...+..|...|...+..+++ .
T Consensus 54 ~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~ 129 (452)
T 3e4b_A 54 IKQAEATYRAAADT----SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQ 129 (452)
T ss_dssp ---------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHH
T ss_pred HHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHH
Confidence 46788888877754 5566677777555554 778899999888555 455777788877776654443 3
Q ss_pred HHHHHHhh-cCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcC---CHHHHHHHHhcCC---
Q 037592 73 RIFREMEE-IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCG---CVDFAHQIFLQMP--- 145 (337)
Q Consensus 73 ~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~--- 145 (337)
+.+.+... .+......+...|...+.++++......+.+.....++..+..|...|...| +.++|++.|++..
T Consensus 130 ~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g 209 (452)
T 3e4b_A 130 QQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG 209 (452)
T ss_dssp HHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC
Confidence 44443333 4566777777777777766666665555554444445557777888888888 7888888887765
Q ss_pred CCcHHhHHHHHHHHHhC----CCHhHHHHHHHHHHhcCCCCCHhHHHHHHHH-H--hhcCchhhHHHHHHHHHHhcCCCC
Q 037592 146 VRNLITWNSMISGFAQN----GRGEEALRIFDDMTEGGTKPDHVSFIGVLSA-C--SHMGLIDRGRKHFASMTKEYRIKP 218 (337)
Q Consensus 146 ~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~ 218 (337)
.++...+..+...|... +++++|+..|++.. .| +...+..+... + ...+++++|...|++..+. |
T Consensus 210 ~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g--- 281 (452)
T 3e4b_A 210 TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D--- 281 (452)
T ss_dssp CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---
T ss_pred CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---
Confidence 33444446666666544 68888888888876 32 33444445444 3 4577888888888887542 3
Q ss_pred CHHHHHHHHHHHHhcC-----ChHHHHHHHHHhcCCCchhHHHHHHHHHhc----CCChhHHHHHHHHHHhcCCCccchH
Q 037592 219 KIEHYNCMVDLLGRAG-----LLEEAETLIENADCRHDSSLWEVLLGACTT----FRNAHVAERVAKKIMELKPDCHLSY 289 (337)
Q Consensus 219 ~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~ 289 (337)
++..+..|...|. .| ++++|.+.|++.- ..++..+..+...|.. ..++++|..+|+++.+. .++.+.
T Consensus 282 ~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~ 357 (452)
T 3e4b_A 282 QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSAD 357 (452)
T ss_dssp CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHH
T ss_pred CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHH
Confidence 5667777777776 44 8888888888766 5566666666666654 34788888888887663 335567
Q ss_pred HHHHHHHHH----cCChhhHHHHHHHHHHhCCc
Q 037592 290 VLLDNVYRA----VGRWNDAFKIRTLMKYSGVK 318 (337)
Q Consensus 290 ~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~ 318 (337)
..|..+|.. ..+.++|...|+...+.|..
T Consensus 358 ~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~ 390 (452)
T 3e4b_A 358 FAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP 390 (452)
T ss_dssp HHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH
Confidence 777777764 34777888888777766643
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.67 E-value=5.6e-14 Score=115.76 Aligned_cols=214 Identities=11% Similarity=0.033 Sum_probs=146.7
Q ss_pred hHHHHHHHHHhh--cC-cccHHHHHHHHH-------hhchh-------hhhHHHHHHHHHh-hCCCCchhHHHHHHHHHh
Q 037592 69 ESVIRIFREMEE--ID-LFSFGIVLRACA-------GLAAL-------RLGKEVHCQYIRR-SGCKDVIIESALVDLYAK 130 (337)
Q Consensus 69 ~~A~~~~~~~~~--~~-~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~ 130 (337)
++|..+|+++.. |+ ...|..++..+. ..|++ ++|..+|++.++. .+ .+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p-~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK-KNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHh
Confidence 455556666555 32 234444444443 23554 7788888887773 32 456677888888888
Q ss_pred cCCHHHHHHHHhcCC--CC-cHH-hHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHH-hhcCchhhHHH
Q 037592 131 CGCVDFAHQIFLQMP--VR-NLI-TWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSAC-SHMGLIDRGRK 205 (337)
Q Consensus 131 ~g~~~~A~~~~~~~~--~~-~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~-~~~~~~~~a~~ 205 (337)
.|++++|..+|+++. .| +.. .|..++..+.+.|++++|..+|++..+... ++...|....... ...|+.++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 888888888888776 23 333 788888888888888888888888877532 2333443333222 23688888888
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-c---CCC--chhHHHHHHHHHhcCCChhHHHHHHHHHH
Q 037592 206 HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-D---CRH--DSSLWEVLLGACTTFRNAHVAERVAKKIM 279 (337)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 279 (337)
+|+.+++.. +.+...|..++..+.+.|++++|..+|++. . ..| ....|..++..+.+.|+.+.|..+++++.
T Consensus 191 ~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888887653 446778888888888888888888888874 2 243 34567777888888888888888888888
Q ss_pred hcCCCcc
Q 037592 280 ELKPDCH 286 (337)
Q Consensus 280 ~~~p~~~ 286 (337)
+..|++.
T Consensus 269 ~~~p~~~ 275 (308)
T 2ond_A 269 TAFREEY 275 (308)
T ss_dssp HHTTTTT
T ss_pred HHccccc
Confidence 8888754
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.65 E-value=8.3e-14 Score=118.18 Aligned_cols=297 Identities=10% Similarity=-0.004 Sum_probs=207.8
Q ss_pred CCchHhHHHHHHHH--HhcCChHHHHHHHHHccc------CC--hhhHHHHHHH--HHcCCChhHHH---------HHHH
Q 037592 18 CGNVVVESSLVDMY--GKCGLVDESHRVFDKMLK------KN--SVSSSALLQG--YCQTGDFESVI---------RIFR 76 (337)
Q Consensus 18 ~~~~~~~~~l~~~~--~~~~~~~~A~~~~~~~~~------~~--~~~~~~l~~~--~~~~g~~~~A~---------~~~~ 76 (337)
.|+..+-+.|-..| ...+++++|..+++++.. .| ...|..++.. ..-.+....+. +.++
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence 56666667777777 889999999999998721 22 3334444332 11112222222 5566
Q ss_pred HHhh---cCc-----ccHHHHHHHHHhhchhhhhHHHHHHHHHhhCC-C----CchhHHHHHHHHHhcCCHHHHHHHHhc
Q 037592 77 EMEE---IDL-----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGC-K----DVIIESALVDLYAKCGCVDFAHQIFLQ 143 (337)
Q Consensus 77 ~~~~---~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~g~~~~A~~~~~~ 143 (337)
.+.. +.. ..+......+...|++++|...++++++.... + ...++..+..+|...|+++.|...+++
T Consensus 87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~ 166 (378)
T 3q15_A 87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166 (378)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 5543 111 12334455678899999999999999875321 2 246778899999999999999988877
Q ss_pred CC-----CC-----cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhc----CCCC-CHhHHHHHHHHHhhcCchhhHHHHHH
Q 037592 144 MP-----VR-----NLITWNSMISGFAQNGRGEEALRIFDDMTEG----GTKP-DHVSFIGVLSACSHMGLIDRGRKHFA 208 (337)
Q Consensus 144 ~~-----~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~ 208 (337)
.. .+ ...+++.+...|...|++++|...|++..+. +..+ ...++..+...+...|++++|...++
T Consensus 167 al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~ 246 (378)
T 3q15_A 167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQ 246 (378)
T ss_dssp HHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 65 11 1357888999999999999999999988763 1111 12466778888999999999999999
Q ss_pred HHHHhc---CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-------cCCCchhHHHHHHHHHhcCCC---hhHHHHHH
Q 037592 209 SMTKEY---RIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-------DCRHDSSLWEVLLGACTTFRN---AHVAERVA 275 (337)
Q Consensus 209 ~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~ 275 (337)
+++.-. +.+....++..+..+|.+.|++++|...+++. +.+.....+..+...+...++ +.+|+..+
T Consensus 247 ~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~ 326 (378)
T 3q15_A 247 KAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYF 326 (378)
T ss_dssp HHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 986511 22334678889999999999999999999873 122223345555566888888 77777777
Q ss_pred HHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHh
Q 037592 276 KKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYS 315 (337)
Q Consensus 276 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 315 (337)
++. ...|.....+..++..|...|++++|...|++..+.
T Consensus 327 ~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 327 EKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 762 233444567788999999999999999999988653
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.5e-13 Score=113.23 Aligned_cols=214 Identities=10% Similarity=0.034 Sum_probs=173.9
Q ss_pred hhhHHHHHHHHHhhCCCCchhHHHHHHHHHh-------cCCH-------HHHHHHHhcCCC---C-cHHhHHHHHHHHHh
Q 037592 100 RLGKEVHCQYIRRSGCKDVIIESALVDLYAK-------CGCV-------DFAHQIFLQMPV---R-NLITWNSMISGFAQ 161 (337)
Q Consensus 100 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~A~~~~~~~~~---~-~~~~~~~l~~~~~~ 161 (337)
++|..+|++++...+ .+...|..++..+.. .|++ ++|..+|++... | +...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~p-~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 678899999999875 778889888887763 5886 899999998763 3 55689999999999
Q ss_pred CCCHhHHHHHHHHHHhcCCCCCH-h-HHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-hcCChHH
Q 037592 162 NGRGEEALRIFDDMTEGGTKPDH-V-SFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLG-RAGLLEE 238 (337)
Q Consensus 162 ~~~~~~a~~~~~~m~~~~~~p~~-~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~ 238 (337)
.|++++|..+|+++.+ +.|+. . .|..++..+.+.|++++|..+|+++++.. +++...|...+.... ..|++++
T Consensus 112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST--TCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999998 45543 3 78888888999999999999999997532 344556654444432 3799999
Q ss_pred HHHHHHHh-cC-CCchhHHHHHHHHHhcCCChhHHHHHHHHHHhc---CCC-ccchHHHHHHHHHHcCChhhHHHHHHHH
Q 037592 239 AETLIENA-DC-RHDSSLWEVLLGACTTFRNAHVAERVAKKIMEL---KPD-CHLSYVLLDNVYRAVGRWNDAFKIRTLM 312 (337)
Q Consensus 239 A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m 312 (337)
|..+|++. .. +.+...|..++..+.+.|+++.|..+|+++++. .|+ ....|..++..+.+.|+.++|..+++++
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999974 22 235677888999999999999999999999995 553 4668889999999999999999999999
Q ss_pred HHhCCc
Q 037592 313 KYSGVK 318 (337)
Q Consensus 313 ~~~~~~ 318 (337)
.+....
T Consensus 268 ~~~~p~ 273 (308)
T 2ond_A 268 FTAFRE 273 (308)
T ss_dssp HHHTTT
T ss_pred HHHccc
Confidence 886654
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.8e-15 Score=124.52 Aligned_cols=240 Identities=14% Similarity=0.092 Sum_probs=125.1
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHHHHHhhcCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhc
Q 037592 52 SVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKC 131 (337)
Q Consensus 52 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 131 (337)
..++..+...+...|++++|+.+++++.+. .........+....++..+...|...
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~------------------------~~~~~~~~~~~~~~~~~~la~~~~~~ 82 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALED------------------------LEKTSGHDHPDVATMLNILALVYRDQ 82 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------HHHHHCSSSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------------------------HHHHcCCCCHHHHHHHHHHHHHHHHC
Confidence 445666677777777777777777766540 00000000111233344444555555
Q ss_pred CCHHHHHHHHhcCCC----------C-cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhc------CCCC-CHhHHHHHHHH
Q 037592 132 GCVDFAHQIFLQMPV----------R-NLITWNSMISGFAQNGRGEEALRIFDDMTEG------GTKP-DHVSFIGVLSA 193 (337)
Q Consensus 132 g~~~~A~~~~~~~~~----------~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~~~p-~~~~~~~l~~~ 193 (337)
|++++|...+++... + ...++..+...|...|++++|...|+++.+. +..| ....+..+...
T Consensus 83 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~ 162 (311)
T 3nf1_A 83 NKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALL 162 (311)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 555555554444330 1 1234555566666666666666666665543 1112 22345555566
Q ss_pred HhhcCchhhHHHHHHHHHHhc-----C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhc----------CCCc------
Q 037592 194 CSHMGLIDRGRKHFASMTKEY-----R-IKPKIEHYNCMVDLLGRAGLLEEAETLIENAD----------CRHD------ 251 (337)
Q Consensus 194 ~~~~~~~~~a~~~~~~~~~~~-----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~~~------ 251 (337)
+...|++++|..++++++... + .+....++..+..+|...|++++|.+.+++.- ..+.
T Consensus 163 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 242 (311)
T 3nf1_A 163 CQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWM 242 (311)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH
Confidence 666677777777766664421 0 11123456666677777777777777766531 1111
Q ss_pred -hhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHh
Q 037592 252 -SSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYS 315 (337)
Q Consensus 252 -~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 315 (337)
...+..+...+...+.+.++...++......|....++..++.+|...|++++|..+|++..+.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 243 HAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp HHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 1112222334556666777777888887777887888889999999999999999999887653
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.63 E-value=3.8e-14 Score=107.48 Aligned_cols=157 Identities=16% Similarity=0.106 Sum_probs=99.8
Q ss_pred chHhHHHHHHHHHhcCChHHHHHHHHHcc--cC-ChhhHHHHHHHHHcCCChhHHHHHHHHHhh--c-CcccHHHHHHHH
Q 037592 20 NVVVESSLVDMYGKCGLVDESHRVFDKML--KK-NSVSSSALLQGYCQTGDFESVIRIFREMEE--I-DLFSFGIVLRAC 93 (337)
Q Consensus 20 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~ 93 (337)
+..+|..+...|.+.|++++|++.|++.+ .| +..+|..+..+|.+.|++++|+..+++... | +...+..+...+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSAN 83 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 45667777777777777777777777762 23 456677777777777777777777777665 2 223444555556
Q ss_pred HhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHH
Q 037592 94 AGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP---VRNLITWNSMISGFAQNGRGEEALR 170 (337)
Q Consensus 94 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~ 170 (337)
...++++.+...+.+..+..+ .+...+..+..+|.+.|++++|++.|++.. +.+..+|..+..+|.+.|++++|+.
T Consensus 84 ~~~~~~~~a~~~~~~a~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 162 (184)
T 3vtx_A 84 FMIDEKQAAIDALQRAIALNT-VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVK 162 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHH
Confidence 666666666666666666543 445556666666666666666666666554 2345556666666666666666666
Q ss_pred HHHHHHh
Q 037592 171 IFDDMTE 177 (337)
Q Consensus 171 ~~~~m~~ 177 (337)
.|++..+
T Consensus 163 ~~~~al~ 169 (184)
T 3vtx_A 163 YFKKALE 169 (184)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6666655
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.63 E-value=9.7e-15 Score=127.47 Aligned_cols=208 Identities=8% Similarity=-0.019 Sum_probs=169.7
Q ss_pred CChHHHHHHHHHccc---CChhhHHHHHHHHHcCCCh-hHHHHHHHHHhh--cC-cccHHHHHHHHHhhchhhhhHHHHH
Q 037592 35 GLVDESHRVFDKMLK---KNSVSSSALLQGYCQTGDF-ESVIRIFREMEE--ID-LFSFGIVLRACAGLAALRLGKEVHC 107 (337)
Q Consensus 35 ~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~ 107 (337)
+.+++++..++.... .+...+..+...+...|++ ++|++.|+++.+ |+ ..+|..+..++...|++++|...|+
T Consensus 82 ~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 346777777776632 2577788888999999999 999999999887 43 5578888889999999999999999
Q ss_pred HHHHhhCCCCchhHHHHHHHHHhc---------CCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhC--------CCHhH
Q 037592 108 QYIRRSGCKDVIIESALVDLYAKC---------GCVDFAHQIFLQMP---VRNLITWNSMISGFAQN--------GRGEE 167 (337)
Q Consensus 108 ~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~--------~~~~~ 167 (337)
++++.. |+...+..+..+|... |++++|+..|++.. +.+...|..+..+|... |++++
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 998875 4468888888889888 99999999998876 44677888888888888 88999
Q ss_pred HHHHHHHHHhcCCC--CCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 037592 168 ALRIFDDMTEGGTK--PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIEN 245 (337)
Q Consensus 168 a~~~~~~m~~~~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 245 (337)
|+..|++..+.... .+...+..+..++...|++++|...|+++++.. +.+...+..+..++...|++++|.+.+.+
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD--PAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999885321 266788888889999999999999999987653 44567888889999999999999988776
Q ss_pred h
Q 037592 246 A 246 (337)
Q Consensus 246 ~ 246 (337)
+
T Consensus 318 ~ 318 (474)
T 4abn_A 318 T 318 (474)
T ss_dssp C
T ss_pred c
Confidence 5
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.61 E-value=5.6e-13 Score=113.08 Aligned_cols=279 Identities=11% Similarity=0.020 Sum_probs=201.6
Q ss_pred CchhhHHHHHHHHhcC--C--CCchHhHHHHHHHH--HhcCChHHHH---------HHHHHcc---cC-C-h---hhHHH
Q 037592 1 RLKQGKEVHAKVITLG--L--CGNVVVESSLVDMY--GKCGLVDESH---------RVFDKML---KK-N-S---VSSSA 57 (337)
Q Consensus 1 ~~~~a~~~~~~~~~~~--~--~~~~~~~~~l~~~~--~~~~~~~~A~---------~~~~~~~---~~-~-~---~~~~~ 57 (337)
++++|.++++++.+.- . .++...|-.|+..- .-.+.++.+. +.++.+. .+ + . ..|..
T Consensus 27 ~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~l~~~~~~~ 106 (378)
T 3q15_A 27 SVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYYSLFF 106 (378)
T ss_dssp CHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCCCccHHHHHHHHH
Confidence 4678999999876632 2 23444455554431 1112222222 4444442 22 1 1 12344
Q ss_pred HHHHHHcCCChhHHHHHHHHHhh-----cC----cccHHHHHHHHHhhchhhhhHHHHHHHHHhhCC-C-----CchhHH
Q 037592 58 LLQGYCQTGDFESVIRIFREMEE-----ID----LFSFGIVLRACAGLAALRLGKEVHCQYIRRSGC-K-----DVIIES 122 (337)
Q Consensus 58 l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-----~~~~~~ 122 (337)
....+...|++++|+..|+++.+ ++ ..++..+..++...|+++.|...+++.++.... + ...+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 56677899999999999999987 22 236778889999999999999999999876432 1 245677
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCC-----Cc----HHhHHHHHHHHHhCCCHhHHHHHHHHHHh-----cCCCCCHhHHH
Q 037592 123 ALVDLYAKCGCVDFAHQIFLQMPV-----RN----LITWNSMISGFAQNGRGEEALRIFDDMTE-----GGTKPDHVSFI 188 (337)
Q Consensus 123 ~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~~~ 188 (337)
.+..+|...|++++|.+.|++... ++ ..++..+..+|...|++++|+..|++..+ .. +....++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHH
Confidence 899999999999999999987761 22 34788899999999999999999999877 32 22356777
Q ss_pred HHHHHHhhcCchhhHHHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCC---hHHHHHHHHHhcCCCch-hHHHHHHHH
Q 037592 189 GVLSACSHMGLIDRGRKHFASMTKEYRI---KPKIEHYNCMVDLLGRAGL---LEEAETLIENADCRHDS-SLWEVLLGA 261 (337)
Q Consensus 189 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~-~~~~~l~~~ 261 (337)
.+...+.+.|++++|...+++.++...- +.....+..+...|...|+ +.+|...+++.+..|+. ..+..+...
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHH
Confidence 8889999999999999999998764322 2224456667777778888 89999999987655443 345667788
Q ss_pred HhcCCChhHHHHHHHHHHh
Q 037592 262 CTTFRNAHVAERVAKKIME 280 (337)
Q Consensus 262 ~~~~g~~~~a~~~~~~~~~ 280 (337)
|...|++++|...|+++.+
T Consensus 346 y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999876
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.60 E-value=2.5e-12 Score=108.76 Aligned_cols=260 Identities=13% Similarity=0.014 Sum_probs=135.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHccc--C--Ch----hhHHHHHHHHHcCCChhHHHHHHHHHhh--c---Cc----ccHH
Q 037592 25 SSLVDMYGKCGLVDESHRVFDKMLK--K--NS----VSSSALLQGYCQTGDFESVIRIFREMEE--I---DL----FSFG 87 (337)
Q Consensus 25 ~~l~~~~~~~~~~~~A~~~~~~~~~--~--~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~---~~----~~~~ 87 (337)
..+...+...|++++|...+++... + +. ..++.+...+...|++++|.+.+++... + +. .++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 3444556677888888887777522 1 11 1355566677777788888777777665 1 11 1234
Q ss_pred HHHHHHHhhchhhhhHHHHHHHHHhhCC------C-CchhHHHHHHHHHhcCCHHHHHHHHhcCC--CC------cHHhH
Q 037592 88 IVLRACAGLAALRLGKEVHCQYIRRSGC------K-DVIIESALVDLYAKCGCVDFAHQIFLQMP--VR------NLITW 152 (337)
Q Consensus 88 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~------~~~~~ 152 (337)
.+...+...|++++|...+++.++.... | ...++..+...+...|++++|...+++.. .+ ...++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 4555666667777777777666654211 1 12344445566666666666666665543 00 12345
Q ss_pred HHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCH-hHHHH-----HHHHHhhcCchhhHHHHHHHHHHhcCCCC--CHHHHH
Q 037592 153 NSMISGFAQNGRGEEALRIFDDMTEGGTKPDH-VSFIG-----VLSACSHMGLIDRGRKHFASMTKEYRIKP--KIEHYN 224 (337)
Q Consensus 153 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~-----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ 224 (337)
..+...+...|++++|...+++.......++. ..+.. .+..+...|++++|...++.........+ ....+.
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence 55556666666666666666665543111111 11111 11224456666666666665532110000 012344
Q ss_pred HHHHHHHhcCChHHHHHHHHHh-------cCCCch-hHHHHHHHHHhcCCChhHHHHHHHHHHhcCCC
Q 037592 225 CMVDLLGRAGLLEEAETLIENA-------DCRHDS-SLWEVLLGACTTFRNAHVAERVAKKIMELKPD 284 (337)
Q Consensus 225 ~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 284 (337)
.+...+...|++++|...+++. +..++. ..+..+..++...|+.++|...++++....+.
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~ 325 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR 325 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc
Confidence 5555666666666666666542 111111 13333445555666666666666666655544
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.5e-13 Score=124.89 Aligned_cols=165 Identities=16% Similarity=0.116 Sum_probs=140.9
Q ss_pred cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 037592 148 NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMV 227 (337)
Q Consensus 148 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 227 (337)
+..+|+.|...|.+.|++++|+..|++.++... -+..++..+..++.+.|++++|+..|+++++.. +-+...|..+.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~--P~~~~a~~nLg 84 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS--PTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence 456888899999999999999999999888532 246678888889999999999999999987642 34578899999
Q ss_pred HHHHhcCChHHHHHHHHHh-cCCC-chhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhH
Q 037592 228 DLLGRAGLLEEAETLIENA-DCRH-DSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDA 305 (337)
Q Consensus 228 ~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 305 (337)
.+|...|++++|++.|++. ...| +...|..+..+|.+.|++++|+..|+++++++|+++.++..++.++...|++++|
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 9999999999999999873 3344 5677888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 037592 306 FKIRTLMKYS 315 (337)
Q Consensus 306 ~~~~~~m~~~ 315 (337)
.+.+++..+.
T Consensus 165 ~~~~~kal~l 174 (723)
T 4gyw_A 165 DERMKKLVSI 174 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999887653
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.59 E-value=1.8e-13 Score=103.40 Aligned_cols=161 Identities=14% Similarity=0.068 Sum_probs=89.0
Q ss_pred HHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 037592 153 NSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGR 232 (337)
Q Consensus 153 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 232 (337)
..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+++.. +.+...+..++..+..
T Consensus 12 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 12 RDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA--PDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHH
Confidence 334444444444444444444443321 1133344444444445555555555555543321 2334445555555555
Q ss_pred cCChHHHHHHHHHh-c-CCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHH
Q 037592 233 AGLLEEAETLIENA-D-CRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRT 310 (337)
Q Consensus 233 ~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (337)
.|++++|.+.+++. . .+.+...+..+...+...|++++|...++++.+..|+++..+..++.++...|++++|...++
T Consensus 89 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 168 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFK 168 (186)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55555555555542 1 222444555666666777777777777777777777767777777777777777777777777
Q ss_pred HHHHhC
Q 037592 311 LMKYSG 316 (337)
Q Consensus 311 ~m~~~~ 316 (337)
+..+..
T Consensus 169 ~~~~~~ 174 (186)
T 3as5_A 169 KANELD 174 (186)
T ss_dssp HHHHHH
T ss_pred HHHHcC
Confidence 776544
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.2e-14 Score=117.92 Aligned_cols=241 Identities=12% Similarity=0.068 Sum_probs=138.6
Q ss_pred chHhHHHHHHHHHhcCChHHHHHHHHHccc--------C---ChhhHHHHHHHHHcCCChhHHHHHHHHHhhcCcccHHH
Q 037592 20 NVVVESSLVDMYGKCGLVDESHRVFDKMLK--------K---NSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGI 88 (337)
Q Consensus 20 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 88 (337)
+..++..+...+...|++++|...|+++.. . ...++..+...|...|++++|..+++++...
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------- 98 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAI------- 98 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-------
Confidence 456788899999999999999999999844 2 2456778888889999999999988877540
Q ss_pred HHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCC----------C-cHHhHHHHHH
Q 037592 89 VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV----------R-NLITWNSMIS 157 (337)
Q Consensus 89 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~-~~~~~~~l~~ 157 (337)
++.......+....++..+...|...|++++|...++++.. + ...++..+..
T Consensus 99 -----------------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~ 161 (311)
T 3nf1_A 99 -----------------REKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLAL 161 (311)
T ss_dssp -----------------HHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred -----------------HHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 00000000001223344444445555555555554444331 1 2234556666
Q ss_pred HHHhCCCHhHHHHHHHHHHhc------CCCCC-HhHHHHHHHHHhhcCchhhHHHHHHHHHHhc------CCCCC-----
Q 037592 158 GFAQNGRGEEALRIFDDMTEG------GTKPD-HVSFIGVLSACSHMGLIDRGRKHFASMTKEY------RIKPK----- 219 (337)
Q Consensus 158 ~~~~~~~~~~a~~~~~~m~~~------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~----- 219 (337)
.|...|++++|+.+|+++.+. +..|. ..++..+...+...|++++|...++++++.. ...+.
T Consensus 162 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 241 (311)
T 3nf1_A 162 LCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIW 241 (311)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHH
Confidence 667777777777777666553 11222 2345566667777777777777777765421 01111
Q ss_pred --HHHHHHHHHHHHhcCChHHHHHHHHHhc-CC-CchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCC
Q 037592 220 --IEHYNCMVDLLGRAGLLEEAETLIENAD-CR-HDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPD 284 (337)
Q Consensus 220 --~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 284 (337)
...+..+...+...+.+.+|...++... .. ....++..+..+|.+.|++++|.+.++++.++.|.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 242 MHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 1222223333444555666666666543 22 34556777888899999999999999998887664
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.55 E-value=1.4e-12 Score=98.51 Aligned_cols=167 Identities=10% Similarity=-0.021 Sum_probs=141.5
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHhcCCC---CcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHH
Q 037592 118 VIIESALVDLYAKCGCVDFAHQIFLQMPV---RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSAC 194 (337)
Q Consensus 118 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 194 (337)
...+..+...+...|++++|...++++.. .+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 45667788889999999999999999873 367788899999999999999999999998863 33567788888899
Q ss_pred hhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-c-CCCchhHHHHHHHHHhcCCChhHHH
Q 037592 195 SHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-D-CRHDSSLWEVLLGACTTFRNAHVAE 272 (337)
Q Consensus 195 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~ 272 (337)
...|++++|.+.++.+++.. +.+...+..++..+...|++++|...+++. . .+.+...+..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN--PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC--cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999997653 556788899999999999999999999874 2 3345677888889999999999999
Q ss_pred HHHHHHHhcCCCccc
Q 037592 273 RVAKKIMELKPDCHL 287 (337)
Q Consensus 273 ~~~~~~~~~~p~~~~ 287 (337)
..++++.+..|++..
T Consensus 165 ~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 165 PHFKKANELDEGASV 179 (186)
T ss_dssp HHHHHHHHHHHCCCG
T ss_pred HHHHHHHHcCCCchh
Confidence 999999998887544
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.55 E-value=1e-12 Score=103.23 Aligned_cols=203 Identities=9% Similarity=0.054 Sum_probs=143.7
Q ss_pred CcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhHHHHHHH
Q 037592 82 DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP---VRNLITWNSMISG 158 (337)
Q Consensus 82 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~ 158 (337)
|...+......+...|++++|...|+++++..++++...+..+..++...|++++|+..|++.. +.+..+|..+..+
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA 85 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 4456777788888889999999999998888765666777778888888999999988888776 3356678888888
Q ss_pred HHhCCCHhHHHHHHHHHHhcCCCCCH-------hHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCC---HHHHHHHHH
Q 037592 159 FAQNGRGEEALRIFDDMTEGGTKPDH-------VSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPK---IEHYNCMVD 228 (337)
Q Consensus 159 ~~~~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~ 228 (337)
|...|++++|+..|++..+.... +. ..|..+...+...|++++|+..++++++ ..|+ ...+..+..
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHHHH
Confidence 88899999999999888875322 33 3466666777788888899888888863 3454 566777777
Q ss_pred HHHhcCChHHHHHHHHHhc--CCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHH
Q 037592 229 LLGRAGLLEEAETLIENAD--CRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNV 295 (337)
Q Consensus 229 ~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 295 (337)
+|...|+ ..++++. ...+...+.... ....+.+++|+..++++.++.|+++.+...+...
T Consensus 162 ~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 162 LFYNNGA-----DVLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHH-----HHHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 7765543 2333321 111233333322 2344567899999999999999987666655443
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.55 E-value=3.8e-12 Score=107.69 Aligned_cols=259 Identities=12% Similarity=0.005 Sum_probs=140.5
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHhh--cCcc------cHHHHHHHHHhhchhhhhHHHHHHHHHhhCCC-C----chhHH
Q 037592 56 SALLQGYCQTGDFESVIRIFREMEE--IDLF------SFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-D----VIIES 122 (337)
Q Consensus 56 ~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~----~~~~~ 122 (337)
......+...|++++|...+++... |+.. ++..+...+...|++++|...+++.+...... + ..++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 3444455566777777777776655 2221 23444555666677777777776666543221 1 12345
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCC-------C---C-cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCC----CHhHH
Q 037592 123 ALVDLYAKCGCVDFAHQIFLQMP-------V---R-NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKP----DHVSF 187 (337)
Q Consensus 123 ~l~~~~~~~g~~~~A~~~~~~~~-------~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p----~~~~~ 187 (337)
.+...+...|++++|...+++.. . | ....+..+...+...|++++|...+++........ ...++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 56666667777777766666554 1 1 12344556666667777777777776665432211 12344
Q ss_pred HHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHH-----HHHHHHHhcCChHHHHHHHHHhc-CCCc-----hhHHH
Q 037592 188 IGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYN-----CMVDLLGRAGLLEEAETLIENAD-CRHD-----SSLWE 256 (337)
Q Consensus 188 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~-~~~~-----~~~~~ 256 (337)
..+...+...|++++|...+++.............+. ..+..+...|++++|...+++.. ..|. ...+.
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence 5555666667777777777766643311111111111 22233556677777777776542 1111 11344
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHhcCCC------ccchHHHHHHHHHHcCChhhHHHHHHHHHH
Q 037592 257 VLLGACTTFRNAHVAERVAKKIMELKPD------CHLSYVLLDNVYRAVGRWNDAFKIRTLMKY 314 (337)
Q Consensus 257 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 314 (337)
.+...+...|++++|...++++....+. ....+..+..++...|+.++|...+++...
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4555666677777777777666552211 112455566666677777777766666543
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.54 E-value=8.8e-13 Score=103.56 Aligned_cols=191 Identities=14% Similarity=-0.014 Sum_probs=122.0
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHhcCC---C-CcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHH
Q 037592 117 DVIIESALVDLYAKCGCVDFAHQIFLQMP---V-RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLS 192 (337)
Q Consensus 117 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 192 (337)
++..+..+...+...|++++|+..|++.. + ++...+..+..++...|++++|+..|++..+.... +...+..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHH
Confidence 45666677777777777777777777665 2 56666666777777777777777777777764221 3445666667
Q ss_pred HHhhcCchhhHHHHHHHHHHhcCCCCCH-------HHHHHHHHHHHhcCChHHHHHHHHHh-cCCCc---hhHHHHHHHH
Q 037592 193 ACSHMGLIDRGRKHFASMTKEYRIKPKI-------EHYNCMVDLLGRAGLLEEAETLIENA-DCRHD---SSLWEVLLGA 261 (337)
Q Consensus 193 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~---~~~~~~l~~~ 261 (337)
.+...|++++|...++++++.. +.+. ..|..+...+...|++++|.+.|++. ...|+ ...|..+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 7777777777777777776542 2233 44666667777777777777777763 44454 3445555555
Q ss_pred HhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCC
Q 037592 262 CTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGV 317 (337)
Q Consensus 262 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 317 (337)
|.. .+...++++..+.+.+...|.... ....+.+++|+..+++..+...
T Consensus 163 ~~~-----~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p 211 (228)
T 4i17_A 163 FYN-----NGADVLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSP 211 (228)
T ss_dssp HHH-----HHHHHHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHH-----HHHHHHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCC
Confidence 533 334455666666555444444333 2334567999999999888643
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=6e-12 Score=102.71 Aligned_cols=240 Identities=8% Similarity=-0.053 Sum_probs=133.4
Q ss_pred hhhHHHHHHHHhcCCCCchHhHHHHHHHHHhc--C-ChHHHHHHHHHcccCChhhHHHHHHHHHcCCChhHHHHHHHHHh
Q 037592 3 KQGKEVHAKVITLGLCGNVVVESSLVDMYGKC--G-LVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79 (337)
Q Consensus 3 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~-~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 79 (337)
.+|.+++.+..+.- +++...+ .+ + +. + ++++|...|++. +..|...|++++|.+.|++..
T Consensus 2 ~~a~~~~~~a~k~~-~~~~~~~-~~---~-~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al 64 (292)
T 1qqe_A 2 SDPVELLKRAEKKG-VPSSGFM-KL---F-SGSDSYKFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAA 64 (292)
T ss_dssp CCHHHHHHHHHHHS-SCCCTHH-HH---H-SCCSHHHHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHh-CcCCCcc-hh---c-CCCCCccHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHH
Confidence 46777777777762 3322222 22 2 32 2 478888887765 445677788888888887765
Q ss_pred hc-----C----cccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHH
Q 037592 80 EI-----D----LFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLI 150 (337)
Q Consensus 80 ~~-----~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 150 (337)
+. + ..+|+.+..++...|++++|...+++.++... ..|+...+ ..
T Consensus 65 ~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~---------------~~g~~~~~-----------a~ 118 (292)
T 1qqe_A 65 DYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFT---------------HRGQFRRG-----------AN 118 (292)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---------------HTTCHHHH-----------HH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH---------------HcCCHHHH-----------HH
Confidence 40 1 12344445555555555555555544443211 11111111 23
Q ss_pred hHHHHHHHHHhC-CCHhHHHHHHHHHHhcCCCC-C----HhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCH----
Q 037592 151 TWNSMISGFAQN-GRGEEALRIFDDMTEGGTKP-D----HVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKI---- 220 (337)
Q Consensus 151 ~~~~l~~~~~~~-~~~~~a~~~~~~m~~~~~~p-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---- 220 (337)
+++.+...|... |++++|+..|++..+..... + ..++..+...+.+.|++++|+..++++++...-.+..
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 198 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHH
Confidence 556666777774 77777777777766531110 1 2345666677777777777777777775432111111
Q ss_pred -HHHHHHHHHHHhcCChHHHHHHHHHh-cCCCchh------HHHHHHHHHh--cCCChhHHHHHHHHHHhcCCCc
Q 037592 221 -EHYNCMVDLLGRAGLLEEAETLIENA-DCRHDSS------LWEVLLGACT--TFRNAHVAERVAKKIMELKPDC 285 (337)
Q Consensus 221 -~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~------~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~p~~ 285 (337)
..+..++.++...|++++|...|++. ...|+.. .+..++.++. ..+++++|+..|+++..++|..
T Consensus 199 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 199 KDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 14566677777777888888777763 3333321 2333444443 4566777777777776666664
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=1.7e-12 Score=106.05 Aligned_cols=201 Identities=11% Similarity=0.015 Sum_probs=135.4
Q ss_pred hhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC-------CC--cHHhHHHHHHHHHhCCCHhHH
Q 037592 98 ALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP-------VR--NLITWNSMISGFAQNGRGEEA 168 (337)
Q Consensus 98 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~--~~~~~~~l~~~~~~~~~~~~a 168 (337)
++++|...|+++ +..|...|++++|...|++.. .+ ...+|+.+..+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 366666666554 234556677766666665554 11 134677788888888888888
Q ss_pred HHHHHHHHhcCCC---C--CHhHHHHHHHHHhhc-CchhhHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCChHH
Q 037592 169 LRIFDDMTEGGTK---P--DHVSFIGVLSACSHM-GLIDRGRKHFASMTKEYRIKPK----IEHYNCMVDLLGRAGLLEE 238 (337)
Q Consensus 169 ~~~~~~m~~~~~~---p--~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~ 238 (337)
+..|++..+.... + ...++..+...|... |++++|+..|+++++-..-..+ ..++..++..|...|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 8888877653111 1 134677788888886 9999999999998754211111 3568889999999999999
Q ss_pred HHHHHHHh-cCCCch--------hHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccch-----HHHHHHHHH--HcCCh
Q 037592 239 AETLIENA-DCRHDS--------SLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLS-----YVLLDNVYR--AVGRW 302 (337)
Q Consensus 239 A~~~~~~~-~~~~~~--------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~ 302 (337)
|...|++. ...|+. ..|..+..++...|++++|+..++++.++.|+.... +..++.++. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 99999974 223321 146677788999999999999999999999885443 344566664 34678
Q ss_pred hhHHHHHHHHH
Q 037592 303 NDAFKIRTLMK 313 (337)
Q Consensus 303 ~~A~~~~~~m~ 313 (337)
++|+..|+++.
T Consensus 257 ~~A~~~~~~~~ 267 (292)
T 1qqe_A 257 SEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHTTSS
T ss_pred HHHHHHhccCC
Confidence 88888876543
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.2e-12 Score=119.02 Aligned_cols=155 Identities=10% Similarity=0.044 Sum_probs=86.1
Q ss_pred hHhHHHHHHHHHhcCChHHHHHHHHHcc--cC-ChhhHHHHHHHHHcCCChhHHHHHHHHHhh--cC-cccHHHHHHHHH
Q 037592 21 VVVESSLVDMYGKCGLVDESHRVFDKML--KK-NSVSSSALLQGYCQTGDFESVIRIFREMEE--ID-LFSFGIVLRACA 94 (337)
Q Consensus 21 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~ 94 (337)
..+|+.|...|.+.|++++|++.|++.+ .| +..+|+.+..+|.+.|++++|++.|++..+ |+ ..+|..+..++.
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~ 88 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLK 88 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4556666666666666666666666652 22 355566666666666666666666666655 32 334555555555
Q ss_pred hhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC--C-CcHHhHHHHHHHHHhCCCHhHHHHH
Q 037592 95 GLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP--V-RNLITWNSMISGFAQNGRGEEALRI 171 (337)
Q Consensus 95 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~-~~~~~~~~l~~~~~~~~~~~~a~~~ 171 (337)
..|++++|++.|+++++..+ .+...++.+..+|.+.|++++|++.|++.. . .+...+..+..+|...|++++|.+.
T Consensus 89 ~~g~~~~A~~~~~kAl~l~P-~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~ 167 (723)
T 4gyw_A 89 EMQDVQGALQCYTRAIQINP-AFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDER 167 (723)
T ss_dssp HTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHH
Confidence 55555555555555555543 344555555555555555555555555444 2 2344555555555555555555555
Q ss_pred HHHHH
Q 037592 172 FDDMT 176 (337)
Q Consensus 172 ~~~m~ 176 (337)
++++.
T Consensus 168 ~~kal 172 (723)
T 4gyw_A 168 MKKLV 172 (723)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.48 E-value=3.3e-13 Score=109.20 Aligned_cols=197 Identities=15% Similarity=0.125 Sum_probs=118.0
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHhcCCC----------C-cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhc-----CC-
Q 037592 118 VIIESALVDLYAKCGCVDFAHQIFLQMPV----------R-NLITWNSMISGFAQNGRGEEALRIFDDMTEG-----GT- 180 (337)
Q Consensus 118 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----~~- 180 (337)
..++..+..+|...|++++|+..++++.. | ...++..+...|...|++++|...|+++.+. +.
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 45566666777777777777766665541 1 2345667777777777777777777776653 11
Q ss_pred CC-CHhHHHHHHHHHhhcCchhhHHHHHHHHHHhc-----C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhc------
Q 037592 181 KP-DHVSFIGVLSACSHMGLIDRGRKHFASMTKEY-----R-IKPKIEHYNCMVDLLGRAGLLEEAETLIENAD------ 247 (337)
Q Consensus 181 ~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------ 247 (337)
.| ...++..+...+...|++++|...++++++.. + .+....++..+..+|...|++++|..++++.-
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 12 23456666777777888888888887775430 1 12234567777788888888888888877531
Q ss_pred ----CCCc-hhHHHHHHHHHhcCCC------hhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHH
Q 037592 248 ----CRHD-SSLWEVLLGACTTFRN------AHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKY 314 (337)
Q Consensus 248 ----~~~~-~~~~~~l~~~~~~~g~------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 314 (337)
..+. ...|..+...+...+. +..+...++......|....++..++.+|...|++++|..++++..+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1222 2223333333333222 22333333322223455566788889999999999999999888765
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.41 E-value=7e-11 Score=95.14 Aligned_cols=241 Identities=10% Similarity=0.004 Sum_probs=163.2
Q ss_pred HHHHHhcCChHHHHHHHHHcccCCh-hhHHHHHHHHHcCCChhHHHHHHHHHhh-cCcccHHHHHHHHHhhchhhhhHHH
Q 037592 28 VDMYGKCGLVDESHRVFDKMLKKNS-VSSSALLQGYCQTGDFESVIRIFREMEE-IDLFSFGIVLRACAGLAALRLGKEV 105 (337)
Q Consensus 28 ~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~ 105 (337)
++-..-.|.+..++.-...+...+. ..-.-+.++|+..|++.... .. |....+..+. .|.. ..+...
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~------~~~~~~~a~~~la-~~~~----~~a~~~ 88 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQD------PTSKLGKVLDLYV-QFLD----TKNIEE 88 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCCC------SSSTTHHHHHHHH-HHHT----TTCCHH
T ss_pred HHHHHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccCC------CCCHHHHHHHHHH-HHhc----ccHHHH
Confidence 4556678999999886666533232 23334558888888877521 11 2222222222 2222 227788
Q ss_pred HHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCC-----CcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCC
Q 037592 106 HCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV-----RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGT 180 (337)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 180 (337)
+++++..+ .++..++..+..++...|++++|++++.+... .+...+..++..+.+.|+.+.|.+.+++|.+ .
T Consensus 89 l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~--~ 165 (310)
T 3mv2_B 89 LENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN--A 165 (310)
T ss_dssp HHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H
T ss_pred HHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--c
Confidence 88887765 35555566788889999999999999988742 2456777888999999999999999999987 4
Q ss_pred CC-----CHhHHHHHHHHHh--hcC--chhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhcC---
Q 037592 181 KP-----DHVSFIGVLSACS--HMG--LIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADC--- 248 (337)
Q Consensus 181 ~p-----~~~~~~~l~~~~~--~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--- 248 (337)
.| +..+...++.++. ..| +...|..+|+++... .|+..+...++.++.+.|++++|.+.++.+..
T Consensus 166 ~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p 242 (310)
T 3mv2_B 166 IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYY 242 (310)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHH
T ss_pred CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 56 3566666666633 234 899999999998543 45533333444478899999999999876421
Q ss_pred ---------CCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccc
Q 037592 249 ---------RHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHL 287 (337)
Q Consensus 249 ---------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 287 (337)
+.++.+...+|......|+ .|.++++++.+..|+++.
T Consensus 243 ~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~ 288 (310)
T 3mv2_B 243 SVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAF 288 (310)
T ss_dssp HTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHH
T ss_pred cccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChH
Confidence 3356666566655555676 788999999999999753
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.41 E-value=6e-12 Score=101.71 Aligned_cols=200 Identities=13% Similarity=0.112 Sum_probs=101.2
Q ss_pred chHhHHHHHHHHHhcCChHHHHHHHHHccc----------C-ChhhHHHHHHHHHcCCChhHHHHHHHHHhhcCcccHHH
Q 037592 20 NVVVESSLVDMYGKCGLVDESHRVFDKMLK----------K-NSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGI 88 (337)
Q Consensus 20 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----------~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 88 (337)
...++..+...|...|++++|+..|+++.. + ...++..+...|...|++++|+++++++.+.
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------- 114 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI------- 114 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-------
Confidence 455677777777777888887777777631 1 2345666777777777777777777666530
Q ss_pred HHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCC----------C-cHHhHHHHHH
Q 037592 89 VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV----------R-NLITWNSMIS 157 (337)
Q Consensus 89 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~-~~~~~~~l~~ 157 (337)
+++......+....++..+..+|...|++++|...++++.. | ...++..+..
T Consensus 115 -----------------~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 177 (283)
T 3edt_B 115 -----------------REKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLAS 177 (283)
T ss_dssp -----------------HHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred -----------------HHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 00000000011233444455555555555555555544431 1 1234555666
Q ss_pred HHHhCCCHhHHHHHHHHHHhc-------CCCCCHh-HHHHHHHHHhhcCchhhH------HHHHHHHHHhcCCCCCHHHH
Q 037592 158 GFAQNGRGEEALRIFDDMTEG-------GTKPDHV-SFIGVLSACSHMGLIDRG------RKHFASMTKEYRIKPKIEHY 223 (337)
Q Consensus 158 ~~~~~~~~~~a~~~~~~m~~~-------~~~p~~~-~~~~l~~~~~~~~~~~~a------~~~~~~~~~~~~~~~~~~~~ 223 (337)
.|...|++++|...++++.+. ...+... .+..+.......+....+ ...++... . ..+....++
T Consensus 178 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~ 255 (283)
T 3edt_B 178 CYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACK-V-DSPTVNTTL 255 (283)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCC-C-CCHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcC-C-CCHHHHHHH
Confidence 666666666666666665542 1122222 222222222222222222 22221110 0 011124566
Q ss_pred HHHHHHHHhcCChHHHHHHHHH
Q 037592 224 NCMVDLLGRAGLLEEAETLIEN 245 (337)
Q Consensus 224 ~~l~~~~~~~g~~~~A~~~~~~ 245 (337)
..+...|...|++++|..++++
T Consensus 256 ~~la~~~~~~g~~~~A~~~~~~ 277 (283)
T 3edt_B 256 RSLGALYRRQGKLEAAHTLEDC 277 (283)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 6777777788888888877775
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.1e-11 Score=97.78 Aligned_cols=185 Identities=14% Similarity=0.039 Sum_probs=113.5
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHhcCC--CC-c---HHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCC-CC-HhHHH
Q 037592 117 DVIIESALVDLYAKCGCVDFAHQIFLQMP--VR-N---LITWNSMISGFAQNGRGEEALRIFDDMTEGGTK-PD-HVSFI 188 (337)
Q Consensus 117 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~-~~~~~ 188 (337)
+...+..+...+.+.|++++|+..|+++. .| + ..++..+..+|...|++++|+..|++..+..+. |. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 34555556666666777777777776665 22 2 445666666677777777777777776664221 11 23344
Q ss_pred HHHHHHhh--------cCchhhHHHHHHHHHHhcCCCCCHHHH-----------------HHHHHHHHhcCChHHHHHHH
Q 037592 189 GVLSACSH--------MGLIDRGRKHFASMTKEYRIKPKIEHY-----------------NCMVDLLGRAGLLEEAETLI 243 (337)
Q Consensus 189 ~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~-----------------~~l~~~~~~~g~~~~A~~~~ 243 (337)
.+..++.. .|++++|...|+++++.. +.+.... ..+...|...|++++|...|
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 171 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY 171 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 45555555 677777777777765543 1122222 55677888889999998888
Q ss_pred HHh-cCCCc----hhHHHHHHHHHhcC----------CChhHHHHHHHHHHhcCCCccc---hHHHHHHHHHHcCChh
Q 037592 244 ENA-DCRHD----SSLWEVLLGACTTF----------RNAHVAERVAKKIMELKPDCHL---SYVLLDNVYRAVGRWN 303 (337)
Q Consensus 244 ~~~-~~~~~----~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~ 303 (337)
+++ ...|+ ...+..+..+|... |++++|+..++++++..|+++. +...+...+...++++
T Consensus 172 ~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~ 249 (261)
T 3qky_A 172 EAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELE 249 (261)
T ss_dssp HHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhh
Confidence 874 22333 34556666666655 8888999999999998888643 3334444444444433
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.40 E-value=1.2e-10 Score=93.73 Aligned_cols=238 Identities=9% Similarity=-0.039 Sum_probs=169.4
Q ss_pred HHHHcCCChhHHHHHHHHHhh-cCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHH
Q 037592 60 QGYCQTGDFESVIRIFREMEE-IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAH 138 (337)
Q Consensus 60 ~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 138 (337)
+-..-.|++..++.-..++.. .+......+.+++...|++.... ...|....+..+.. |...+ |+
T Consensus 21 kn~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~---------~~~~~~~a~~~la~-~~~~~----a~ 86 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQD---------PTSKLGKVLDLYVQ-FLDTK----NI 86 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCCC---------SSSTTHHHHHHHHH-HHTTT----CC
T ss_pred HHHHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccCC---------CCCHHHHHHHHHHH-Hhccc----HH
Confidence 344567888888885544432 11223344568888888877531 22244334444443 33333 67
Q ss_pred HHHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCC-CCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhc
Q 037592 139 QIFLQMP---VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTK-PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEY 214 (337)
Q Consensus 139 ~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 214 (337)
..|++.. .++..++..+..++...|++++|++++.+....|.. -+...+...+..+.+.|+.+.|.+.++.|.+.
T Consensus 87 ~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~- 165 (310)
T 3mv2_B 87 EELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA- 165 (310)
T ss_dssp HHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-
Confidence 7787766 355666678889999999999999999998776542 25567777889999999999999999999533
Q ss_pred CCCC-----CHHHHHHHHHHH--HhcC--ChHHHHHHHHHhcC-CCchhHHHHHHHHHhcCCChhHHHHHHHHHHhc---
Q 037592 215 RIKP-----KIEHYNCMVDLL--GRAG--LLEEAETLIENADC-RHDSSLWEVLLGACTTFRNAHVAERVAKKIMEL--- 281 (337)
Q Consensus 215 ~~~~-----~~~~~~~l~~~~--~~~g--~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--- 281 (337)
.| +..+...|+.++ ...| ++.+|..+|+++.. .|+..+...++.++.+.|++++|++.++.+.+.
T Consensus 166 --~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~ 243 (310)
T 3mv2_B 166 --IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYS 243 (310)
T ss_dssp --SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHH
T ss_pred --CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 66 356666666663 3334 89999999999753 354334445556899999999999999987765
Q ss_pred -------CCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhC
Q 037592 282 -------KPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSG 316 (337)
Q Consensus 282 -------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 316 (337)
+|+++.++..++......|+ +|.++++++.+..
T Consensus 244 ~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 244 VEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp TTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred ccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 58889999888888777887 8899999988744
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.38 E-value=1.1e-10 Score=91.29 Aligned_cols=185 Identities=11% Similarity=-0.019 Sum_probs=119.1
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHhcCC--CCc----HHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCH--hHHHH
Q 037592 118 VIIESALVDLYAKCGCVDFAHQIFLQMP--VRN----LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDH--VSFIG 189 (337)
Q Consensus 118 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~ 189 (337)
...+..+...+.+.|++++|+..|+++. .|+ ...+..+..+|.+.|++++|+..|+++.+..+.... ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 3455566777888888888888888776 232 246777788888888888888888888775322111 13333
Q ss_pred HHHHHhh------------------cCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhcCCCc
Q 037592 190 VLSACSH------------------MGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHD 251 (337)
Q Consensus 190 l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 251 (337)
+..++.. .|+.++|...|+.+++.. +-+...+....... .+...+
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~----------~~~~~~----- 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLV----------FLKDRL----- 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHH----------HHHHHH-----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHH----------HHHHHH-----
Confidence 3444433 355666666666665332 11122211111000 000000
Q ss_pred hhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCcc---chHHHHHHHHHHcCChhhHHHHHHHHHHhCCcc
Q 037592 252 SSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCH---LSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKK 319 (337)
Q Consensus 252 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 319 (337)
......+...|.+.|++++|+..|+++++..|+++ .++..++.+|.+.|++++|.+.++.+...+...
T Consensus 147 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 147 AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 00112345678899999999999999999999865 568899999999999999999999888866553
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.37 E-value=8.6e-11 Score=94.16 Aligned_cols=171 Identities=11% Similarity=-0.016 Sum_probs=137.6
Q ss_pred CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCC---HhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCC-HH
Q 037592 146 VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPD---HVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPK-IE 221 (337)
Q Consensus 146 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~ 221 (337)
..+...+..+...+.+.|++++|+..|+++.+.... + ...+..+..++.+.|++++|...|+.+++...-.|. ..
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 446677888889999999999999999999886322 2 456777888999999999999999999876422223 56
Q ss_pred HHHHHHHHHHh--------cCChHHHHHHHHHh-cCCCc-hhHH-----------------HHHHHHHhcCCChhHHHHH
Q 037592 222 HYNCMVDLLGR--------AGLLEEAETLIENA-DCRHD-SSLW-----------------EVLLGACTTFRNAHVAERV 274 (337)
Q Consensus 222 ~~~~l~~~~~~--------~g~~~~A~~~~~~~-~~~~~-~~~~-----------------~~l~~~~~~~g~~~~a~~~ 274 (337)
.+..+..++.. .|++++|...|++. ...|+ .... ..+...|...|++++|+..
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 170 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVT 170 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 77888889988 99999999999974 33333 2233 3456779999999999999
Q ss_pred HHHHHhcCCCc---cchHHHHHHHHHHc----------CChhhHHHHHHHHHHhCC
Q 037592 275 AKKIMELKPDC---HLSYVLLDNVYRAV----------GRWNDAFKIRTLMKYSGV 317 (337)
Q Consensus 275 ~~~~~~~~p~~---~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~~~ 317 (337)
|+++++..|++ +..+..++.+|... |++++|...|+++.+...
T Consensus 171 ~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 171 YEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp HHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence 99999999984 45788899999877 889999999999987553
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.36 E-value=8.6e-11 Score=83.45 Aligned_cols=128 Identities=16% Similarity=0.152 Sum_probs=76.0
Q ss_pred HHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-c-CCCchhHHHHHHHHHhc
Q 037592 187 FIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-D-CRHDSSLWEVLLGACTT 264 (337)
Q Consensus 187 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~ 264 (337)
+..+...+...|++++|..+++.+++.. +.+...+..++..+...|++++|..+++++ . .+.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC--CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 3344445555555666665555554321 234445555555566666666666666543 1 12234455556666667
Q ss_pred CCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhC
Q 037592 265 FRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSG 316 (337)
Q Consensus 265 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 316 (337)
.|++++|.+.++++.+..|++...+..++.++...|++++|...++++.+..
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 7777777777777777666666666777777777777777777777666543
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.33 E-value=8.3e-11 Score=107.20 Aligned_cols=169 Identities=9% Similarity=-0.047 Sum_probs=130.2
Q ss_pred HhhchhhhhHHHHHHHH--------HhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhC
Q 037592 94 AGLAALRLGKEVHCQYI--------RRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP---VRNLITWNSMISGFAQN 162 (337)
Q Consensus 94 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~ 162 (337)
...|++++|.+.+++++ +..+ .+...+..+..++...|++++|+..|+++. +.+...|..+..+|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFS-ESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccc-cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 67888899999998888 4433 567788888889999999999999998877 44677888888899999
Q ss_pred CCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 037592 163 GRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETL 242 (337)
Q Consensus 163 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 242 (337)
|++++|+..|++..+.... +...+..+..++.+.|++++ .+.|+++++.. +.+...+..+..++.+.|++++|.+.
T Consensus 481 g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN--DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC--CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999998885322 45667778888888999999 99999887643 44577888889999999999999999
Q ss_pred HHHh-cCCCc-hhHHHHHHHHHhcCCC
Q 037592 243 IENA-DCRHD-SSLWEVLLGACTTFRN 267 (337)
Q Consensus 243 ~~~~-~~~~~-~~~~~~l~~~~~~~g~ 267 (337)
|++. ...|+ ...+..+..++...++
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCC
Confidence 9885 45554 4556666677766555
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.31 E-value=9.1e-11 Score=90.63 Aligned_cols=131 Identities=6% Similarity=-0.058 Sum_probs=97.6
Q ss_pred HHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 037592 152 WNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLG 231 (337)
Q Consensus 152 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 231 (337)
...+..+|...|++++|+..|++..+..+ -+...+..+...+...|++++|...|+++++.. +.+..++..+..+|.
T Consensus 57 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 57 ATELALAYKKNRNYDKAYLFYKELLQKAP-NNVDCLEACAEMQVCRGQEKDALRMYEKILQLE--ADNLAANIFLGNYYY 133 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHH
Confidence 34488889999999999999999988632 256778888889999999999999999997653 446788888888887
Q ss_pred hcCC--hHHHHHHHHHhc-CCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCc
Q 037592 232 RAGL--LEEAETLIENAD-CRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDC 285 (337)
Q Consensus 232 ~~g~--~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 285 (337)
..|+ .+.+...+++.. ..|....+.....++...|++++|+..|++++++.|++
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 134 LTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 6654 445556666543 22223334445556777899999999999999999983
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=9.8e-12 Score=90.70 Aligned_cols=142 Identities=9% Similarity=-0.018 Sum_probs=95.6
Q ss_pred HHHHHhCCCHhHHHHHHHHHHhcCCCC-CHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 037592 156 ISGFAQNGRGEEALRIFDDMTEGGTKP-DHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234 (337)
Q Consensus 156 ~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 234 (337)
...+...|++++|+..+++.... .| +...+..+...|.+.|++++|++.|+++++.. +-+..+|..+..+|...|
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ--ERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcC
Confidence 34445566777777777766542 22 23345556677777788888888887776542 445677777777888888
Q ss_pred ChHHHHHHHHHh-cCCC-chhHHHHHHHHHhcCCChhHHHHH-HHHHHhcCCCccchHHHHHHHHHHcCC
Q 037592 235 LLEEAETLIENA-DCRH-DSSLWEVLLGACTTFRNAHVAERV-AKKIMELKPDCHLSYVLLDNVYRAVGR 301 (337)
Q Consensus 235 ~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~ 301 (337)
++++|...|++. ...| +...|..+...|.+.|++++|.+. ++++++++|+++.+|......+...|+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 888888887763 3333 455677777778888887665544 578888888888888777777776664
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.9e-10 Score=93.50 Aligned_cols=177 Identities=7% Similarity=-0.041 Sum_probs=137.8
Q ss_pred HHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHh
Q 037592 134 VDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKE 213 (337)
Q Consensus 134 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 213 (337)
.+.....+....+.+...+..+...+...|++++|...|++..+... -+...+..+...+...|++++|...++.++..
T Consensus 102 ~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~ 180 (287)
T 3qou_A 102 EEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ 180 (287)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchh
Confidence 44555566666656667788888889999999999999999888532 25567777888899999999999999988543
Q ss_pred cCCCCCHHHHH-HHHHHHHhcCChHHHHHHHHHh-c-CCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCc--cch
Q 037592 214 YRIKPKIEHYN-CMVDLLGRAGLLEEAETLIENA-D-CRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDC--HLS 288 (337)
Q Consensus 214 ~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~ 288 (337)
.|+..... .....+...++.++|...+++. . .+.+...+..+...+...|++++|+..++++++.+|++ ...
T Consensus 181 ---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a 257 (287)
T 3qou_A 181 ---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT 257 (287)
T ss_dssp ---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred ---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence 45544333 3333466778888888888864 3 33456778888889999999999999999999999987 778
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHH
Q 037592 289 YVLLDNVYRAVGRWNDAFKIRTLMKY 314 (337)
Q Consensus 289 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 314 (337)
+..++.++...|+.++|...|++-..
T Consensus 258 ~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 258 RXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 99999999999999999998887653
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.30 E-value=2e-11 Score=111.22 Aligned_cols=169 Identities=12% Similarity=-0.042 Sum_probs=143.0
Q ss_pred HhcCCHHHHHHHHhcCC-----------CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhc
Q 037592 129 AKCGCVDFAHQIFLQMP-----------VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHM 197 (337)
Q Consensus 129 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 197 (337)
...|++++|++.+++.. +.+...+..+..+|...|++++|+..|+++.+... .+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHHc
Confidence 77899999999998875 44667899999999999999999999999988532 2567888888899999
Q ss_pred CchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cCC-CchhHHHHHHHHHhcCCChhHHHHHH
Q 037592 198 GLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DCR-HDSSLWEVLLGACTTFRNAHVAERVA 275 (337)
Q Consensus 198 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~ 275 (337)
|++++|...|+++++.. +.+...+..+..+|.+.|++++ .+.|++. ... .+...|..+..++.+.|++++|+..|
T Consensus 481 g~~~~A~~~~~~al~l~--P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF--PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999997653 4467889999999999999999 9999874 333 35677888999999999999999999
Q ss_pred HHHHhcCCCccchHHHHHHHHHHcCC
Q 037592 276 KKIMELKPDCHLSYVLLDNVYRAVGR 301 (337)
Q Consensus 276 ~~~~~~~p~~~~~~~~l~~~~~~~g~ 301 (337)
+++.+++|++..++..++.++...++
T Consensus 558 ~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HhhcccCcccHHHHHHHHHHHHccCC
Confidence 99999999999999999999877555
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.30 E-value=3.3e-10 Score=80.33 Aligned_cols=131 Identities=16% Similarity=0.192 Sum_probs=101.7
Q ss_pred hHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 037592 151 TWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLL 230 (337)
Q Consensus 151 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 230 (337)
.|..++..+...|++++|..+++++.+.+. .+...+..+...+...|++++|...++++.... +.+...+..++..+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--CCchHHHHHHHHHH
Confidence 466777888888888888888888877532 355667777778888888888888888886542 44567778888888
Q ss_pred HhcCChHHHHHHHHHh-c-CCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCC
Q 037592 231 GRAGLLEEAETLIENA-D-CRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPD 284 (337)
Q Consensus 231 ~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 284 (337)
...|++++|.+.++++ . .+.+...+..+...+...|++++|...++++.+..|+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 8899999999888874 2 2335667777888888999999999999998888776
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.27 E-value=7.6e-09 Score=84.03 Aligned_cols=225 Identities=11% Similarity=-0.050 Sum_probs=153.9
Q ss_pred CChhHHHHHHHHHhh--cCcc-cHHHHHHHHHhhc--hhhhhHHHHHHHHHhhCCCCchhHHHHHHHH----Hhc---CC
Q 037592 66 GDFESVIRIFREMEE--IDLF-SFGIVLRACAGLA--ALRLGKEVHCQYIRRSGCKDVIIESALVDLY----AKC---GC 133 (337)
Q Consensus 66 g~~~~A~~~~~~~~~--~~~~-~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---g~ 133 (337)
...++|+.+++++.. |+.. +|+.-..++...+ ++++++..++.++..++ .+..+|+.-..++ ... ++
T Consensus 47 e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 47 EYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHhccccCC
Confidence 334577777777776 4333 3555555666666 77777777777777665 4555665544444 444 67
Q ss_pred HHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHh--HHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCc------hhh
Q 037592 134 VDFAHQIFLQMP---VRNLITWNSMISGFAQNGRGE--EALRIFDDMTEGGTKPDHVSFIGVLSACSHMGL------IDR 202 (337)
Q Consensus 134 ~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~------~~~ 202 (337)
+++++.+++++. +.+..+|+.-.-.+...|.++ ++++.++++.+..+. |...|+.-.....+.+. +++
T Consensus 126 ~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 126 PYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp THHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHH
Confidence 788888887776 446677777777777777777 888888888886544 66666655555555555 788
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHhc-----CCCchhHHHHHHHHHhcCCChhHHHHHHH
Q 037592 203 GRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE-AETLIENAD-----CRHDSSLWEVLLGACTTFRNAHVAERVAK 276 (337)
Q Consensus 203 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 276 (337)
+++.++.++... +-|...|+.+...+.+.|+... +..+.+++- ...++..+..+...+.+.|+.++|.++++
T Consensus 205 El~~~~~aI~~~--p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 205 ELNYVKDKIVKC--PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhC--CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 888888887653 5678888888888888877444 445666531 12355667777788888888888888888
Q ss_pred HHHh-cCCCccchHHHHHH
Q 037592 277 KIME-LKPDCHLSYVLLDN 294 (337)
Q Consensus 277 ~~~~-~~p~~~~~~~~l~~ 294 (337)
.+.+ .+|.....|...+.
T Consensus 283 ~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 283 LLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHTTCGGGHHHHHHHHH
T ss_pred HHHhccChHHHHHHHHHHh
Confidence 8886 78887666665443
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.4e-10 Score=89.60 Aligned_cols=23 Identities=13% Similarity=0.134 Sum_probs=13.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHcc
Q 037592 26 SLVDMYGKCGLVDESHRVFDKML 48 (337)
Q Consensus 26 ~l~~~~~~~~~~~~A~~~~~~~~ 48 (337)
.....+...|++++|+..|++.+
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al 31 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTI 31 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 34445556666666666666653
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.27 E-value=5.5e-10 Score=91.76 Aligned_cols=218 Identities=10% Similarity=0.019 Sum_probs=150.7
Q ss_pred cCCChhHHHHHHHHHhh--cCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHH
Q 037592 64 QTGDFESVIRIFREMEE--IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIF 141 (337)
Q Consensus 64 ~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 141 (337)
..|++++|.+++++..+ +.. + +...++++.|...|.++ ...|...|++++|...|
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~--~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~ 59 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTS--F------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDAY 59 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCC--S------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcccc--c------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHH
Confidence 45677888888887766 321 0 11145666666666554 45677889999888888
Q ss_pred hcCCC-----Cc----HHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCC---CCC--HhHHHHHHHHHhhcCchhhHHHHH
Q 037592 142 LQMPV-----RN----LITWNSMISGFAQNGRGEEALRIFDDMTEGGT---KPD--HVSFIGVLSACSHMGLIDRGRKHF 207 (337)
Q Consensus 142 ~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~---~p~--~~~~~~l~~~~~~~~~~~~a~~~~ 207 (337)
.+... .+ ..+|+.+...|...|++++|+..|++..+.-. .|. ..++..+...|.. |++++|+..+
T Consensus 60 ~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~ 138 (307)
T 2ifu_A 60 LQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLY 138 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHH
Confidence 77651 11 34788888999999999999999998765311 111 3466677778888 9999999999
Q ss_pred HHHHHhcCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHh-cC------CCc-hhHHHHHHHHHhcCCChhHHHHHH
Q 037592 208 ASMTKEYRIKP----KIEHYNCMVDLLGRAGLLEEAETLIENA-DC------RHD-SSLWEVLLGACTTFRNAHVAERVA 275 (337)
Q Consensus 208 ~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~------~~~-~~~~~~l~~~~~~~g~~~~a~~~~ 275 (337)
++++....-.. ...++..+...|...|++++|+..|++. .. .+. ...+..+..++...|++++|...|
T Consensus 139 ~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~ 218 (307)
T 2ifu_A 139 QQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCV 218 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 98865321111 1467888899999999999999999874 11 111 224556667788889999999999
Q ss_pred HHHHhcCCCccch-----HHHHHHHHHHcCChhhHHH
Q 037592 276 KKIMELKPDCHLS-----YVLLDNVYRAVGRWNDAFK 307 (337)
Q Consensus 276 ~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~A~~ 307 (337)
+++. ..|+...+ ...++.++ ..|+.+.+..
T Consensus 219 ~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 219 RESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 9999 88875432 33445555 5577666555
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.27 E-value=7.6e-10 Score=85.67 Aligned_cols=162 Identities=10% Similarity=-0.012 Sum_probs=90.5
Q ss_pred cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcC----chhhHHHHHHHHHHhcCCCCCHHHH
Q 037592 148 NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMG----LIDRGRKHFASMTKEYRIKPKIEHY 223 (337)
Q Consensus 148 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~ 223 (337)
++.++..+...|...+++++|+..|++..+.| +...+..+...|.. + ++++|.++|+...+ .-++..+
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~----~g~~~a~ 88 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVE----AGSKSGE 88 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH----TTCHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH----CCCHHHH
Confidence 34444445555555555555555555555543 23344444444444 4 56666666666532 1244455
Q ss_pred HHHHHHHHh----cCChHHHHHHHHHhc-CCCc---hhHHHHHHHHHhc----CCChhHHHHHHHHHHhcCCCccchHHH
Q 037592 224 NCMVDLLGR----AGLLEEAETLIENAD-CRHD---SSLWEVLLGACTT----FRNAHVAERVAKKIMELKPDCHLSYVL 291 (337)
Q Consensus 224 ~~l~~~~~~----~g~~~~A~~~~~~~~-~~~~---~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~ 291 (337)
..|...|.. .+++++|.++|++.- ..|. +..+..|...|.. .+++++|+.+|+++.+. |.++.++..
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~ 167 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYW 167 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHH
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHH
Confidence 555555555 556666666666542 2221 4555555555555 56677777777777666 333556666
Q ss_pred HHHHHHHc-C-----ChhhHHHHHHHHHHhCCc
Q 037592 292 LDNVYRAV-G-----RWNDAFKIRTLMKYSGVK 318 (337)
Q Consensus 292 l~~~~~~~-g-----~~~~A~~~~~~m~~~~~~ 318 (337)
|..+|... | ++++|...|++..+.|..
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 66666543 2 677777777776666543
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.26 E-value=2e-08 Score=90.55 Aligned_cols=166 Identities=7% Similarity=-0.069 Sum_probs=98.9
Q ss_pred hHHHHHHHHHhCCCHhHHH-HHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhc---------CCCC--
Q 037592 151 TWNSMISGFAQNGRGEEAL-RIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEY---------RIKP-- 218 (337)
Q Consensus 151 ~~~~l~~~~~~~~~~~~a~-~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~~~~-- 218 (337)
.|...+..+...|+.++|. .+|++.... ++.+...+...+....+.|+++.|..+|+.++... +.+.
T Consensus 345 lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~ 423 (679)
T 4e6h_A 345 IWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNE 423 (679)
T ss_dssp HHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcch
Confidence 3444444445566666775 777777654 33344445555666666777777777777775421 1111
Q ss_pred ---------CHHHHHHHHHHHHhcCChHHHHHHHHHhcCC-C--chhHHHHHHHHHhcC-CChhHHHHHHHHHHhcCCCc
Q 037592 219 ---------KIEHYNCMVDLLGRAGLLEEAETLIENADCR-H--DSSLWEVLLGACTTF-RNAHVAERVAKKIMELKPDC 285 (337)
Q Consensus 219 ---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~--~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~p~~ 285 (337)
...+|...+....+.|..+.|..+|++.... | ....|...+....+. ++++.|.++|+.+++..|++
T Consensus 424 ~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~ 503 (679)
T 4e6h_A 424 SAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATD 503 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTC
T ss_pred hhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCc
Confidence 1235666666666777777777777764211 1 122233222222233 44777777777777777776
Q ss_pred cchHHHHHHHHHHcCChhhHHHHHHHHHHhCC
Q 037592 286 HLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGV 317 (337)
Q Consensus 286 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 317 (337)
+..+...+......|+.+.|..+|++......
T Consensus 504 ~~~w~~y~~fe~~~~~~~~AR~lferal~~~~ 535 (679)
T 4e6h_A 504 GEYINKYLDFLIYVNEESQVKSLFESSIDKIS 535 (679)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSS
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence 66666777777777777777777777665443
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.24 E-value=5.2e-10 Score=83.85 Aligned_cols=57 Identities=9% Similarity=-0.094 Sum_probs=36.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHh
Q 037592 121 ESALVDLYAKCGCVDFAHQIFLQMP---VRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177 (337)
Q Consensus 121 ~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 177 (337)
+..+...+.+.|++++|+..|++.. +.+...+..+...+...|++++|+..|++...
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~ 68 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPL 68 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh
Confidence 4445556666677777777776666 23455666666666677777777777666654
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=3.1e-10 Score=101.50 Aligned_cols=160 Identities=8% Similarity=-0.048 Sum_probs=122.0
Q ss_pred cCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHH
Q 037592 131 CGCVDFAHQIFLQMP---VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHF 207 (337)
Q Consensus 131 ~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 207 (337)
.|++++|+..+++.. +.+...+..+...|...|++++|...|++..+... .+...+..+...+...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 478899999999887 33577899999999999999999999999988532 25667888889999999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cCC-CchhHHHHHHHHHhcC---CChhHHHHHHHHHHhcC
Q 037592 208 ASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DCR-HDSSLWEVLLGACTTF---RNAHVAERVAKKIMELK 282 (337)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~ 282 (337)
+++++.. +.+...+..+..+|...|++++|.+.+++. ... .+...+..+..++... |++++|.+.++++.+..
T Consensus 81 ~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDAA--PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 9997653 456788999999999999999999999974 333 3566788888888888 99999999999999999
Q ss_pred CCccchHHHHH
Q 037592 283 PDCHLSYVLLD 293 (337)
Q Consensus 283 p~~~~~~~~l~ 293 (337)
|++...|..+.
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 99877777665
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.24 E-value=4.1e-10 Score=84.44 Aligned_cols=159 Identities=8% Similarity=0.003 Sum_probs=99.8
Q ss_pred cHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCC--CcHHhHHHHHHH-HHh
Q 037592 85 SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV--RNLITWNSMISG-FAQ 161 (337)
Q Consensus 85 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~-~~~ 161 (337)
.+......+...|++++|...++++++..+ .+...+..+..++...|++++|+..+++... |+...+..+... +..
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQ-SRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHH-TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHh
Confidence 345566677778888888888888877765 5677888888888889999999999888872 333333222211 112
Q ss_pred CCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 037592 162 NGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241 (337)
Q Consensus 162 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 241 (337)
.++..+|+..+++..+..+ .+...+..+...+...|++++|...++++++...-..+...+..++.++...|+.++|..
T Consensus 87 ~~~~~~a~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 87 QAAESPELKRLEQELAANP-DNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHTSCHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 2223345666666666421 134556666666777777777777777765331111124466666677777777777766
Q ss_pred HHHH
Q 037592 242 LIEN 245 (337)
Q Consensus 242 ~~~~ 245 (337)
.|++
T Consensus 166 ~y~~ 169 (176)
T 2r5s_A 166 KYRR 169 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.23 E-value=2.8e-10 Score=88.13 Aligned_cols=138 Identities=13% Similarity=0.008 Sum_probs=80.4
Q ss_pred hhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHcccC-ChhhHHHHHHHHHcCC----ChhHHHHHHHH
Q 037592 3 KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKK-NSVSSSALLQGYCQTG----DFESVIRIFRE 77 (337)
Q Consensus 3 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~g----~~~~A~~~~~~ 77 (337)
++|.+.|+...+.| +...+..|...|...+++++|+..|++.... ++..+..|...|.. + ++++|+++|++
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEK 78 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence 35677777777764 6667777777777788888888888777544 56667777777766 5 67777777777
Q ss_pred Hhh-cCcccHHHHHHHHHh----hchhhhhHHHHHHHHHhhCC-CCchhHHHHHHHHHh----cCCHHHHHHHHhcC
Q 037592 78 MEE-IDLFSFGIVLRACAG----LAALRLGKEVHCQYIRRSGC-KDVIIESALVDLYAK----CGCVDFAHQIFLQM 144 (337)
Q Consensus 78 ~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~ 144 (337)
..+ -+..++..+...+.. .+++++|..+|++..+.+.. .....+..|..+|.. .+++++|+..|++.
T Consensus 79 A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 79 AVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp HHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 655 233344444444444 44555555555555544321 013344444444444 34444444444443
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=8.3e-10 Score=89.71 Aligned_cols=156 Identities=9% Similarity=-0.063 Sum_probs=67.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHH-HHH
Q 037592 119 IIESALVDLYAKCGCVDFAHQIFLQMP---VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVL-SAC 194 (337)
Q Consensus 119 ~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~-~~~ 194 (337)
..+..+...+...|++++|+..|++.. +.+...+..+...+...|++++|...++++... .|+........ ..+
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~l 195 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQIEL 195 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHHHH
Confidence 333444444444444444444444443 223344444444444455555555544444332 22222111111 123
Q ss_pred hhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cCCCc---hhHHHHHHHHHhcCCChhH
Q 037592 195 SHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DCRHD---SSLWEVLLGACTTFRNAHV 270 (337)
Q Consensus 195 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~---~~~~~~l~~~~~~~g~~~~ 270 (337)
...++.+.|...+++++... +.+...+..+...|...|++++|...|+++ ...|+ ...+..++..+...|+.++
T Consensus 196 ~~~~~~~~a~~~l~~al~~~--P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 196 LXQAADTPEIQQLQQQVAEN--PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHTSCHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HhhcccCccHHHHHHHHhcC--CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 33444444444444443321 233444445555555555555555555442 11121 3344444555555555555
Q ss_pred HHHHHHHH
Q 037592 271 AERVAKKI 278 (337)
Q Consensus 271 a~~~~~~~ 278 (337)
|...+++.
T Consensus 274 a~~~~r~a 281 (287)
T 3qou_A 274 LASXYRRQ 281 (287)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555444
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.22 E-value=1.4e-09 Score=85.10 Aligned_cols=178 Identities=8% Similarity=-0.056 Sum_probs=119.3
Q ss_pred chHhHHHHHHHHHhcCChHHHHHHHHHccc--CC----hhhHHHHHHHHHcCCChhHHHHHHHHHhh--cCcc----cHH
Q 037592 20 NVVVESSLVDMYGKCGLVDESHRVFDKMLK--KN----SVSSSALLQGYCQTGDFESVIRIFREMEE--IDLF----SFG 87 (337)
Q Consensus 20 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~----~~~ 87 (337)
+...+..+...+.+.|++++|+..|++++. |+ ...+..++.++.+.|++++|+..|+++.+ |+.. ++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 344556677888999999999999999843 32 24678888999999999999999999988 6553 344
Q ss_pred HHHHHHHh------------------hchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcH
Q 037592 88 IVLRACAG------------------LAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNL 149 (337)
Q Consensus 88 ~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 149 (337)
.+..++.. .|++++|...|+++++..+ .+......+.... ...... .
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P-~~~~a~~a~~~l~----~~~~~~----------~ 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYP-NSQYTTDATKRLV----FLKDRL----------A 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCT-TCTTHHHHHHHHH----HHHHHH----------H
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCc-CChhHHHHHHHHH----HHHHHH----------H
Confidence 44555443 4677888888888777643 2233322211110 000000 0
Q ss_pred HhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCC--HhHHHHHHHHHhhcCchhhHHHHHHHHHH
Q 037592 150 ITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPD--HVSFIGVLSACSHMGLIDRGRKHFASMTK 212 (337)
Q Consensus 150 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 212 (337)
.....+...|.+.|++++|+..|+++.+..+... ...+..+..++.+.|+.++|.+.++.+..
T Consensus 148 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~ 212 (225)
T 2yhc_A 148 KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA 212 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence 1123456778888999999999998887532211 13566777888889999999998888754
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.22 E-value=9.6e-10 Score=90.29 Aligned_cols=217 Identities=9% Similarity=-0.066 Sum_probs=144.1
Q ss_pred chhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHcccCChhhHHHHHHHHHcCCChhHHHHHHHHHhh-
Q 037592 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEE- 80 (337)
Q Consensus 2 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 80 (337)
+++|.+++++..+.. +.+ .+...+++++|...|++. +..|...|++++|.+.|.+..+
T Consensus 7 ~~eA~~~~~~a~k~~-~~~---------~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~ 65 (307)
T 2ifu_A 7 ISEAHEHIAKAEKYL-KTS---------FMKWKPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYLQEAEA 65 (307)
T ss_dssp HHHHHHHHHHHHHHH-CCC---------SSSCSCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc-ccc---------ccCCCCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHH
Confidence 567888888877642 111 011147777777777654 4567777888888888887766
Q ss_pred -c---C----cccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCC-----CchhHHHHHHHHHhcCCHHHHHHHHhcCCC-
Q 037592 81 -I---D----LFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK-----DVIIESALVDLYAKCGCVDFAHQIFLQMPV- 146 (337)
Q Consensus 81 -~---~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 146 (337)
+ + ..+|..+..+|...|++++|...+++.++..... ...++..+..+|.. |++++|+..|++...
T Consensus 66 ~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~ 144 (307)
T 2ifu_A 66 HANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAV 144 (307)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHH
Confidence 1 1 2356777777888888888888888877653221 13567778888877 888888888877661
Q ss_pred ----Cc----HHhHHHHHHHHHhCCCHhHHHHHHHHHHhc----CCCCC-HhHHHHHHHHHhhcCchhhHHHHHHHHHHh
Q 037592 147 ----RN----LITWNSMISGFAQNGRGEEALRIFDDMTEG----GTKPD-HVSFIGVLSACSHMGLIDRGRKHFASMTKE 213 (337)
Q Consensus 147 ----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 213 (337)
.+ ..+++.+...|...|++++|+..|++..+. +..+. ...+..+..++...|++++|...|++.+ .
T Consensus 145 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~ 223 (307)
T 2ifu_A 145 FENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-S 223 (307)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-T
T ss_pred HHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-C
Confidence 11 356778888889999999999999888763 11111 1255556667777899999999998886 3
Q ss_pred cCCCCC---HHHHHHHHHHHHhcCChHHHHHH
Q 037592 214 YRIKPK---IEHYNCMVDLLGRAGLLEEAETL 242 (337)
Q Consensus 214 ~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~ 242 (337)
..-.++ ......++..+ ..|+.+.+.++
T Consensus 224 ~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 224 IPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp STTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 211112 12344555555 56777777764
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.3e-10 Score=84.64 Aligned_cols=138 Identities=12% Similarity=0.034 Sum_probs=63.3
Q ss_pred HHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHHH
Q 037592 93 CAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP---VRNLITWNSMISGFAQNGRGEEAL 169 (337)
Q Consensus 93 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~ 169 (337)
+...|++++|+..+++.....+ .+...+..+..+|.+.|++++|++.|++.. +.+..+|..+..+|...|++++|+
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~p-~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~ 85 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSPR-QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAV 85 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSHH-HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcChHHHHHHHHHHhcccCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHH
Confidence 3344455555555544443322 223333445555555555555555555444 224445555555555555555555
Q ss_pred HHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHH-HHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 037592 170 RIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKH-FASMTKEYRIKPKIEHYNCMVDLLGRAG 234 (337)
Q Consensus 170 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g 234 (337)
..|++..+..+. +...+..+...+.+.|++++|.+. ++++++.. |-++.+|......+...|
T Consensus 86 ~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~--P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 86 ECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF--PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS--TTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHhC
Confidence 555555553211 334444455555555555444333 34443321 223444444444444333
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.21 E-value=9.1e-09 Score=83.59 Aligned_cols=226 Identities=13% Similarity=0.148 Sum_probs=175.3
Q ss_pred hhch-hhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcC--CHHHHHHHHhcCC---CCcHHhHHHHHHHH----HhC--
Q 037592 95 GLAA-LRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCG--CVDFAHQIFLQMP---VRNLITWNSMISGF----AQN-- 162 (337)
Q Consensus 95 ~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~---~~~~~~~~~l~~~~----~~~-- 162 (337)
+.+. .++|+..+.+++..++ .+..+|+.-..++...| ++++++.+++.+. +.+..+|+.-...+ ...
T Consensus 44 ~~~e~s~~aL~~t~~~L~~nP-~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 44 KAEEYSERALHITELGINELA-SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTT
T ss_pred HcCCCCHHHHHHHHHHHHHCc-HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccc
Confidence 3444 4689999999999876 67788888888888888 9999999999887 34556776655554 445
Q ss_pred -CCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchh--hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC----
Q 037592 163 -GRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLID--RGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL---- 235 (337)
Q Consensus 163 -~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---- 235 (337)
+++++++.+++++.+...+ +..+|+.-.-.+.+.|.++ ++++.++.+++.. +-|-..|+.-...+...|.
T Consensus 123 ~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d--~~N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD--LKNNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp CCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHSSGGGCCH
T ss_pred cCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccchh
Confidence 7899999999999986443 6677776666667788888 9999999998764 5677888877777777776
Q ss_pred --hHHHHHHHHHh-c-CCCchhHHHHHHHHHhcCCChhH-HHHHHHHHHhcC---CCccchHHHHHHHHHHcCChhhHHH
Q 037592 236 --LEEAETLIENA-D-CRHDSSLWEVLLGACTTFRNAHV-AERVAKKIMELK---PDCHLSYVLLDNVYRAVGRWNDAFK 307 (337)
Q Consensus 236 --~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~ 307 (337)
++++++.+++. . .+.|...|+.+...+.+.|+... +..++.++.+.+ |.++.++..++.+|.+.|+.++|.+
T Consensus 200 ~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 200 NTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 88888888863 3 34477789888888888887544 566777777665 7778899999999999999999999
Q ss_pred HHHHHHHhCCccCCCCcc
Q 037592 308 IRTLMKYSGVKKMPGKSW 325 (337)
Q Consensus 308 ~~~~m~~~~~~~~~~~~~ 325 (337)
+++.+.+ .+.|.....|
T Consensus 280 ~~~~l~~-~~Dpir~~yW 296 (306)
T 3dra_A 280 VYDLLKS-KYNPIRSNFW 296 (306)
T ss_dssp HHHHHHH-TTCGGGHHHH
T ss_pred HHHHHHh-ccChHHHHHH
Confidence 9999764 2334344444
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=7.9e-10 Score=98.87 Aligned_cols=147 Identities=10% Similarity=-0.050 Sum_probs=110.7
Q ss_pred hchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHHHH
Q 037592 96 LAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP---VRNLITWNSMISGFAQNGRGEEALRIF 172 (337)
Q Consensus 96 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~ 172 (337)
.|++++|...++++++..+ .+...+..+...+...|++++|++.+++.. +.+...+..+..+|...|++++|...|
T Consensus 2 ~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4788999999999988765 567889999999999999999999999876 345778999999999999999999999
Q ss_pred HHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc---CChHHHHHHHHHh
Q 037592 173 DDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRA---GLLEEAETLIENA 246 (337)
Q Consensus 173 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~ 246 (337)
++..+... .+...+..+..++...|++++|.+.++++++.. +.+...+..+..++... |+.++|.+.+++.
T Consensus 81 ~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASDAAP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL--PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 99988632 356788888899999999999999999997653 44678888999999999 9999999999874
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.18 E-value=4.8e-09 Score=94.54 Aligned_cols=212 Identities=8% Similarity=-0.018 Sum_probs=152.8
Q ss_pred HHHHHHHHhh--c-CcccHHHHHHHHHhhchhhhhH-HHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCC
Q 037592 71 VIRIFREMEE--I-DLFSFGIVLRACAGLAALRLGK-EVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPV 146 (337)
Q Consensus 71 A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 146 (337)
+..+|+++.. | +...|...+..+...|+.++|. .+|++.+...+ .+...|...+....+.|++++|.++|+++..
T Consensus 328 v~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P-~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~ 406 (679)
T 4e6h_A 328 MTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIP-NSAVLAFSLSEQYELNTKIPEIETTILSCID 406 (679)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4456666665 3 3345666666677778888886 99999887543 5666777788888889999999999888762
Q ss_pred -------------Cc------------HHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhc-Cch
Q 037592 147 -------------RN------------LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHM-GLI 200 (337)
Q Consensus 147 -------------~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-~~~ 200 (337)
|+ ...|...+....+.|+.+.|..+|.++.+.-..+....|...+..-.+. ++.
T Consensus 407 ~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~ 486 (679)
T 4e6h_A 407 RIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDT 486 (679)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCH
Confidence 21 2357777777778888999999999988751111223333322222233 458
Q ss_pred hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cCCC----chhHHHHHHHHHhcCCChhHHHHHH
Q 037592 201 DRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DCRH----DSSLWEVLLGACTTFRNAHVAERVA 275 (337)
Q Consensus 201 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~ 275 (337)
+.|.++|+..++.. +.+...+...+......|+.+.|..+|++. ...| ....|...+..-.+.|+.+.+.++.
T Consensus 487 e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~ 564 (679)
T 4e6h_A 487 KTACKVLELGLKYF--ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLE 564 (679)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999988764 456667778888888889999999999974 3233 3456888888888899999999999
Q ss_pred HHHHhcCCCc
Q 037592 276 KKIMELKPDC 285 (337)
Q Consensus 276 ~~~~~~~p~~ 285 (337)
+++.+..|++
T Consensus 565 ~R~~~~~P~~ 574 (679)
T 4e6h_A 565 KRFFEKFPEV 574 (679)
T ss_dssp HHHHHHSTTC
T ss_pred HHHHHhCCCC
Confidence 9999988885
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.12 E-value=2.4e-08 Score=81.27 Aligned_cols=163 Identities=9% Similarity=-0.040 Sum_probs=121.9
Q ss_pred HHHHHHHHHhCCCHhHHHHHHHHHHhcCC-CCCHh----HHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCC----HHH
Q 037592 152 WNSMISGFAQNGRGEEALRIFDDMTEGGT-KPDHV----SFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPK----IEH 222 (337)
Q Consensus 152 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~ 222 (337)
+...+..+...|++++|..++++..+... .|+.. .+..+...+...|++++|...++.++....-.++ ..+
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 33346778899999999999999887422 22211 2334556677788999999999999763222233 346
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhc--------CCCc-hhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCC------ccc
Q 037592 223 YNCMVDLLGRAGLLEEAETLIENAD--------CRHD-SSLWEVLLGACTTFRNAHVAERVAKKIMELKPD------CHL 287 (337)
Q Consensus 223 ~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------~~~ 287 (337)
++.++.+|...|++++|...|++.- ..+. ..++..+...|.+.|++++|+..+++++++.+. -..
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~ 237 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 8899999999999999999998641 1122 236777888899999999999999999874322 256
Q ss_pred hHHHHHHHHHHcCC-hhhHHHHHHHHHH
Q 037592 288 SYVLLDNVYRAVGR-WNDAFKIRTLMKY 314 (337)
Q Consensus 288 ~~~~l~~~~~~~g~-~~~A~~~~~~m~~ 314 (337)
+|..++.+|...|+ +++|...+++...
T Consensus 238 ~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 89999999999995 5999999988765
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.12 E-value=1.2e-09 Score=79.33 Aligned_cols=97 Identities=10% Similarity=-0.077 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHh-cC-CCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHH
Q 037592 220 IEHYNCMVDLLGRAGLLEEAETLIENA-DC-RHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297 (337)
Q Consensus 220 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 297 (337)
...+..+...+.+.|++++|...|++. .. +.+...|..+..+|...|++++|+..|+++.+++|+++..|..++.+|.
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 456667777778888888888888764 22 3356667777778888888888888888888888888888888888888
Q ss_pred HcCChhhHHHHHHHHHHhC
Q 037592 298 AVGRWNDAFKIRTLMKYSG 316 (337)
Q Consensus 298 ~~g~~~~A~~~~~~m~~~~ 316 (337)
..|++++|...|++..+..
T Consensus 116 ~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 8888888888888877754
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.11 E-value=1e-08 Score=79.14 Aligned_cols=124 Identities=12% Similarity=-0.075 Sum_probs=78.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCch
Q 037592 121 ESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLI 200 (337)
Q Consensus 121 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 200 (337)
+..+...+...|++++|+..|++...++...+..+..+|...|++++|+..|++..+.. +.+...+..+..++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 34556667777777777777777776677777777777777777777777777776653 22455666666777777777
Q ss_pred hhHHHHHHHHHHhcCCCC--------------CHHHHHHHHHHHHhcCChHHHHHHHHH
Q 037592 201 DRGRKHFASMTKEYRIKP--------------KIEHYNCMVDLLGRAGLLEEAETLIEN 245 (337)
Q Consensus 201 ~~a~~~~~~~~~~~~~~~--------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 245 (337)
++|...++.+++...-.+ ....+..+..+|...|++++|.+.|++
T Consensus 88 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 146 (213)
T 1hh8_A 88 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLAL 146 (213)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 777777777754321111 114444555555555555555555554
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.09 E-value=1e-07 Score=83.20 Aligned_cols=174 Identities=10% Similarity=-0.025 Sum_probs=96.2
Q ss_pred chhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCC-hHHHHHHHHHccc------CChhhHHHHHHHHH----cCCChhH
Q 037592 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGL-VDESHRVFDKMLK------KNSVSSSALLQGYC----QTGDFES 70 (337)
Q Consensus 2 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~------~~~~~~~~l~~~~~----~~g~~~~ 70 (337)
++.+.++|+..+.. .|++..|...+....+.+. .+....+|+..+. .+...|...+..+. .+|+.+.
T Consensus 30 ~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~ 107 (493)
T 2uy1_A 30 YRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEK 107 (493)
T ss_dssp HHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHH
T ss_pred HHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHH
Confidence 56788888888875 5788888888887777663 3556667776532 25567777776544 2456778
Q ss_pred HHHHHHHHhh-cCcccHHHHHHHHH-----------------hhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcC
Q 037592 71 VIRIFREMEE-IDLFSFGIVLRACA-----------------GLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCG 132 (337)
Q Consensus 71 A~~~~~~~~~-~~~~~~~~l~~~~~-----------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 132 (337)
+.++|+++.. |... +..+-..|. ..+.+..|..+++++...-...+...|...+..-...+
T Consensus 108 vR~iy~rAL~~P~~~-~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~ 186 (493)
T 2uy1_A 108 IRNGYMRALQTPMGS-LSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENG 186 (493)
T ss_dssp HHHHHHHHHTSCCTT-HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHhChhhh-HHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCC
Confidence 8888888877 3221 111111111 11223334444444433211112334444443322110
Q ss_pred --C-----HHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhc
Q 037592 133 --C-----VDFAHQIFLQMP---VRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178 (337)
Q Consensus 133 --~-----~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 178 (337)
- .+.+..+|+++. +.+...|...+..+.+.|+.++|..+|++....
T Consensus 187 ~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~ 242 (493)
T 2uy1_A 187 MKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM 242 (493)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 0 233455666554 234556666666667777777777777777765
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.09 E-value=3.8e-10 Score=91.38 Aligned_cols=189 Identities=8% Similarity=-0.099 Sum_probs=101.2
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHH
Q 037592 118 VIIESALVDLYAKCGCVDFAHQIFLQMP---VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSAC 194 (337)
Q Consensus 118 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 194 (337)
...+..+...+.+.|++++|+..|++.. +.+...|..+..+|...|++++|+..+++..+... .+...+..+..++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 3444555556666666666666665554 22455566666666666666666666666655321 2344555556666
Q ss_pred hhcCchhhHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHhcCCCchhHHHHHHHHHhcCCChhHH
Q 037592 195 SHMGLIDRGRKHFASMTKEYRIKP---KIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVA 271 (337)
Q Consensus 195 ~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 271 (337)
...|++++|...++.+++...-.+ ....+..+ ...+...+.. .......++......+ ..+. .|++++|
T Consensus 83 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~~~~i~~~l-~~l~-~~~~~~A 154 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL--RIAKKKRWNS----IEERRIHQESELHSYL-TRLI-AAERERE 154 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH--HHHHHHHHHH----HHHTCCCCCCHHHHHH-HHHH-HHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH--HHHHHHHHHH----HHHHHHhhhHHHHHHH-HHHH-HHHHHHH
Confidence 666666666666666543311000 01111111 1111111111 1112222333322222 2222 5788888
Q ss_pred HHHHHHHHhcCCCccchHHHHHHHHHHc-CChhhHHHHHHHHHHh
Q 037592 272 ERVAKKIMELKPDCHLSYVLLDNVYRAV-GRWNDAFKIRTLMKYS 315 (337)
Q Consensus 272 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~ 315 (337)
++.++++.+.+|++......+...+.+. +.+++|.++|++..+.
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 8888888888888766666666555555 6678888888877654
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.09 E-value=4.2e-09 Score=74.08 Aligned_cols=107 Identities=10% Similarity=0.001 Sum_probs=63.4
Q ss_pred HHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cC-CCchhHHHHHHHHHh
Q 037592 186 SFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DC-RHDSSLWEVLLGACT 263 (337)
Q Consensus 186 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~ 263 (337)
.+......+.+.|++++|++.|+++++.. +.+..+|..+..+|.+.|++++|+..+++. .. +.+...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD--PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 34445555666666666666666665432 334556666666666666666666666652 22 223455666666666
Q ss_pred cCCChhHHHHHHHHHHhcCCCccchHHHHHH
Q 037592 264 TFRNAHVAERVAKKIMELKPDCHLSYVLLDN 294 (337)
Q Consensus 264 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 294 (337)
..|++++|++.|+++++++|++..++..|..
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPSNEEAREGVRN 123 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 6667777777777766666666655555443
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.09 E-value=3.9e-09 Score=81.50 Aligned_cols=141 Identities=8% Similarity=-0.112 Sum_probs=91.3
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHcccCChhhHHHHHHHHHcCCChhHHHHHHHHHhh--c-CcccHHHHHHHHHhhch
Q 037592 22 VVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEE--I-DLFSFGIVLRACAGLAA 98 (337)
Q Consensus 22 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~ 98 (337)
..+..+...+...|++++|+..|++...++...|..+..++...|++++|++.|++..+ | +...+..+..++...|+
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHccc
Confidence 34556677777888888888888888777777888888888888888888888887776 3 33456666667777777
Q ss_pred hhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhc
Q 037592 99 LRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178 (337)
Q Consensus 99 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 178 (337)
+++|...++++++..+......+.. .|. .........+..+..+|...|++++|...|++..+.
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~-------~~~---------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKI-------LGL---------QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGG-------GTB---------CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHH-------hcc---------ccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 7777777777766543211111000 000 000112356666777777777777777777777664
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.06 E-value=8.7e-09 Score=75.98 Aligned_cols=127 Identities=8% Similarity=-0.058 Sum_probs=95.4
Q ss_pred HHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cC-CCchhHHHHHHHHHh
Q 037592 186 SFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DC-RHDSSLWEVLLGACT 263 (337)
Q Consensus 186 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~ 263 (337)
.+..+...+...|++++|...++.++... +.+..++..+..++...|++++|...+++. .. +.+...+..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 44555666677788888888887776542 445677777788888888888888888763 22 334566777888888
Q ss_pred cCCChhHHHHHHHHHHhcCCCccchHHHHHHH--HHHcCChhhHHHHHHHHHH
Q 037592 264 TFRNAHVAERVAKKIMELKPDCHLSYVLLDNV--YRAVGRWNDAFKIRTLMKY 314 (337)
Q Consensus 264 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~m~~ 314 (337)
..|++++|...++++.+..|++...+..+..+ +...|++++|+..+++...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999999999999877777544444 7788999999999887654
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.05 E-value=2.4e-08 Score=81.37 Aligned_cols=87 Identities=11% Similarity=0.047 Sum_probs=43.6
Q ss_pred HHHHHHcCCChhHHHHHHHHHhh--cCcc-------cHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCC-----chhHHH
Q 037592 58 LLQGYCQTGDFESVIRIFREMEE--IDLF-------SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD-----VIIESA 123 (337)
Q Consensus 58 l~~~~~~~g~~~~A~~~~~~~~~--~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~ 123 (337)
.+..+...|++++|.+++++..+ +... .+..+...+...+++++|...++++++.....+ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35566777777777777777665 1111 112234444445556666666666655322211 113444
Q ss_pred HHHHHHhcCCHHHHHHHHhcC
Q 037592 124 LVDLYAKCGCVDFAHQIFLQM 144 (337)
Q Consensus 124 l~~~~~~~g~~~~A~~~~~~~ 144 (337)
+..+|...|++++|+..|+++
T Consensus 161 lg~~y~~~g~~~~A~~~~~~a 181 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQI 181 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 444444445544444444433
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.04 E-value=8.2e-09 Score=84.09 Aligned_cols=157 Identities=8% Similarity=-0.024 Sum_probs=94.0
Q ss_pred HHHHHHhhchhhhhHHHHHHHHHhhCCCC-----chhHHHHHHHHHhcCCHHHHHHHHhcCCC-----Cc----HHhHHH
Q 037592 89 VLRACAGLAALRLGKEVHCQYIRRSGCKD-----VIIESALVDLYAKCGCVDFAHQIFLQMPV-----RN----LITWNS 154 (337)
Q Consensus 89 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~ 154 (337)
.+..+...|++++|.+.+.+.++...... ...+..+...+...|++++|+..+++... .+ ..+++.
T Consensus 81 ~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 2qfc_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 33444455555555555555444322111 12233455566677777777777665431 11 346777
Q ss_pred HHHHHHhCCCHhHHHHHHHHHHhc-CCCCC-----HhHHHHHHHHHhhcCchhhHHHHHHHHHHhc---CCCC-CHHHHH
Q 037592 155 MISGFAQNGRGEEALRIFDDMTEG-GTKPD-----HVSFIGVLSACSHMGLIDRGRKHFASMTKEY---RIKP-KIEHYN 224 (337)
Q Consensus 155 l~~~~~~~~~~~~a~~~~~~m~~~-~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~-~~~~~~ 224 (337)
+...|...|++++|...|++..+. ...|+ ..++..+...|...|++++|...+++.++.. +... -..++.
T Consensus 161 lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~ 240 (293)
T 2qfc_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 778888888888888888777621 01111 1466677777888888888888888775431 1111 156777
Q ss_pred HHHHHHHhcCChHHH-HHHHHH
Q 037592 225 CMVDLLGRAGLLEEA-ETLIEN 245 (337)
Q Consensus 225 ~l~~~~~~~g~~~~A-~~~~~~ 245 (337)
.+..+|.+.|++++| ...+++
T Consensus 241 ~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 241 QRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHHH
Confidence 788888888888888 665654
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.9e-08 Score=81.92 Aligned_cols=164 Identities=9% Similarity=-0.028 Sum_probs=111.7
Q ss_pred hHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCH-----hHHHHHHHHHhhcCchhhHHHHHHHHHHhcCC--CCC--HH
Q 037592 151 TWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDH-----VSFIGVLSACSHMGLIDRGRKHFASMTKEYRI--KPK--IE 221 (337)
Q Consensus 151 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~--~~ 221 (337)
.+...+..+...|++++|.+.+.+..+....... ..+..+...+...|++++|...++.++..... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4445667778888888888888877764322111 12333445566778888888888887643111 111 34
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHh----cCCCc-----hhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCC------cc
Q 037592 222 HYNCMVDLLGRAGLLEEAETLIENA----DCRHD-----SSLWEVLLGACTTFRNAHVAERVAKKIMELKPD------CH 286 (337)
Q Consensus 222 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------~~ 286 (337)
+++.++..|...|++++|...|++. ...|+ ..++..+...|...|++++|+..+++++++.++ ..
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7788888888888888888888763 11122 246777778888999999999999888774322 14
Q ss_pred chHHHHHHHHHHcCChhhH-HHHHHHHHH
Q 037592 287 LSYVLLDNVYRAVGRWNDA-FKIRTLMKY 314 (337)
Q Consensus 287 ~~~~~l~~~~~~~g~~~~A-~~~~~~m~~ 314 (337)
.+|..++.+|...|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 5778888899999999998 676776543
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.03 E-value=6.6e-09 Score=73.06 Aligned_cols=101 Identities=13% Similarity=0.076 Sum_probs=89.2
Q ss_pred CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHh-cC-CCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHH
Q 037592 216 IKPK-IEHYNCMVDLLGRAGLLEEAETLIENA-DC-RHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLL 292 (337)
Q Consensus 216 ~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 292 (337)
+.|+ ...+...+..|.+.|++++|++.|++. .. +.+...|..+..++...|++++|+..++++++++|+++.+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 3444 456778899999999999999999974 33 34677888899999999999999999999999999999999999
Q ss_pred HHHHHHcCChhhHHHHHHHHHHhC
Q 037592 293 DNVYRAVGRWNDAFKIRTLMKYSG 316 (337)
Q Consensus 293 ~~~~~~~g~~~~A~~~~~~m~~~~ 316 (337)
+.++...|++++|...|++..+..
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHC
Confidence 999999999999999999998854
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.00 E-value=2.4e-08 Score=69.53 Aligned_cols=114 Identities=17% Similarity=0.137 Sum_probs=79.0
Q ss_pred hHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-c-CCCchhHHHHHHHHH
Q 037592 185 VSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-D-CRHDSSLWEVLLGAC 262 (337)
Q Consensus 185 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~ 262 (337)
..+..+...+...|++++|.+.+++++... +.+..++..++..+...|++++|..+++++ . .+.+...+..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 455556666677777777777777775432 345566677777777777777777777763 1 233455677777778
Q ss_pred hcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcC
Q 037592 263 TTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300 (337)
Q Consensus 263 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 300 (337)
...|++++|...++++.+..|+++..+..+..++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 88888888888888888888887777777776665543
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=1.6e-09 Score=78.56 Aligned_cols=93 Identities=11% Similarity=-0.073 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHh-c-CCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHc
Q 037592 222 HYNCMVDLLGRAGLLEEAETLIENA-D-CRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAV 299 (337)
Q Consensus 222 ~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 299 (337)
.+..+...+...|++++|...|++. . .+.+...|..+..++...|++++|+..|+++++++|+++..+..++.+|...
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~ 102 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQX 102 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHc
Confidence 3334444444444444444444432 1 1123333444444444444444444444444444444444444444444444
Q ss_pred CChhhHHHHHHHHHH
Q 037592 300 GRWNDAFKIRTLMKY 314 (337)
Q Consensus 300 g~~~~A~~~~~~m~~ 314 (337)
|++++|...|++..+
T Consensus 103 g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 103 GELAEAESGLFLAQE 117 (148)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555444444443
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.00 E-value=5e-09 Score=78.43 Aligned_cols=124 Identities=12% Similarity=0.082 Sum_probs=73.9
Q ss_pred HhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHhcCCh--
Q 037592 160 AQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDL-LGRAGLL-- 236 (337)
Q Consensus 160 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~-- 236 (337)
...|++++|...+++..+.. +.+...+..+...+...|++++|...++.+++.. +.+...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcch
Confidence 44566777777777666642 2244566666666677777777777777765542 3345566666666 5566666
Q ss_pred HHHHHHHHHh-cCCC-chhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCcc
Q 037592 237 EEAETLIENA-DCRH-DSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCH 286 (337)
Q Consensus 237 ~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 286 (337)
++|...+++. ...| +...+..+...+...|++++|...++++.+..|+++
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 149 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRI 149 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTS
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCc
Confidence 7777776653 2222 344555666666777777777777777777666653
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.00 E-value=1.9e-08 Score=70.69 Aligned_cols=116 Identities=12% Similarity=-0.030 Sum_probs=84.8
Q ss_pred hHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cC-CCchhHHHHHHHHH
Q 037592 185 VSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DC-RHDSSLWEVLLGAC 262 (337)
Q Consensus 185 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~ 262 (337)
..+..+...+...|++++|...++.++... +.+...+..+...+...|++++|...+++. .. +.+...+..+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 445556666677777777777777775542 345667777777777788888888777763 22 23455677777788
Q ss_pred hcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCCh
Q 037592 263 TTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRW 302 (337)
Q Consensus 263 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 302 (337)
...|++++|...++++.+..|+++..+..+..++...|++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 8888889999999888888888888888888888887765
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.99 E-value=3.3e-09 Score=81.18 Aligned_cols=144 Identities=9% Similarity=-0.064 Sum_probs=69.1
Q ss_pred HhcCChHHHHH---HHHHcccCChhhHHHHHHHHHcCCChhHHHHHHHHHhh---------cCcccHHHHHHHHHhhchh
Q 037592 32 GKCGLVDESHR---VFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEE---------IDLFSFGIVLRACAGLAAL 99 (337)
Q Consensus 32 ~~~~~~~~A~~---~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~ 99 (337)
...|++++|.+ .+..-+.....++..+...+...|++++|...+++... ....++..+...+...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 34667777777 44332222345566667777777777777777776654 0112344444555555555
Q ss_pred hhhHHHHHHHHHhhCC-C-----CchhHHHHHHHHHhcCCHHHHHHHHhcCC-----CCc----HHhHHHHHHHHHhCCC
Q 037592 100 RLGKEVHCQYIRRSGC-K-----DVIIESALVDLYAKCGCVDFAHQIFLQMP-----VRN----LITWNSMISGFAQNGR 164 (337)
Q Consensus 100 ~~a~~~~~~~~~~~~~-~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~----~~~~~~l~~~~~~~~~ 164 (337)
++|...+++.++.... + ...++..+...+...|++++|...+++.. ..+ ..++..+...+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 5555555555443100 1 12234444555555555555555544433 011 1123344444445555
Q ss_pred HhHHHHHHHHH
Q 037592 165 GEEALRIFDDM 175 (337)
Q Consensus 165 ~~~a~~~~~~m 175 (337)
+++|...+++.
T Consensus 163 ~~~A~~~~~~a 173 (203)
T 3gw4_A 163 LLEAQQHWLRA 173 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555544443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.6e-08 Score=71.45 Aligned_cols=115 Identities=13% Similarity=0.045 Sum_probs=72.3
Q ss_pred HhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-c-CCCchhHHHHHHHH
Q 037592 184 HVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-D-CRHDSSLWEVLLGA 261 (337)
Q Consensus 184 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~ 261 (337)
...+..+...+...|++++|...++.+++. .+.+...+..+..++...|++++|...+++. . .+.+...+..+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 344555555666666666666666666432 1234556666666666666666666666653 2 22244556666667
Q ss_pred HhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcC
Q 037592 262 CTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300 (337)
Q Consensus 262 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 300 (337)
+...|++++|+..++++.+..|.+...+..+..++...|
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 777777777777777777777776677777777666554
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.8e-08 Score=80.08 Aligned_cols=181 Identities=9% Similarity=-0.069 Sum_probs=99.9
Q ss_pred cCCChhHHHHHHHHHhh--cC-cccHHHH-------HHHHHhhchhhhhHHHHHHHHHhhCCC-----C-----------
Q 037592 64 QTGDFESVIRIFREMEE--ID-LFSFGIV-------LRACAGLAALRLGKEVHCQYIRRSGCK-----D----------- 117 (337)
Q Consensus 64 ~~g~~~~A~~~~~~~~~--~~-~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~----------- 117 (337)
..++...|.+.|.++.+ |+ ...|..+ ..++...++..+++..+...+...+.. +
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~ 97 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP 97 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence 57778888888888777 33 2356655 456666666666666666655521100 0
Q ss_pred ----chhHHHHHHHHHhcCCHHHHHHHHhcCC--CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCC--HhHHHH
Q 037592 118 ----VIIESALVDLYAKCGCVDFAHQIFLQMP--VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPD--HVSFIG 189 (337)
Q Consensus 118 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~ 189 (337)
....-.+...+...|++++|.+.|+.+. .|+......+...+.+.+++++|+..|+...... .|. ...+..
T Consensus 98 v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~ 176 (282)
T 4f3v_A 98 VTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVA 176 (282)
T ss_dssp CSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHH
T ss_pred cCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHH
Confidence 1122334556666777777777777665 3332244555556666677777777766443321 110 123444
Q ss_pred HHHHHhhcCchhhHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHh
Q 037592 190 VLSACSHMGLIDRGRKHFASMTKEYRIKPK--IEHYNCMVDLLGRAGLLEEAETLIENA 246 (337)
Q Consensus 190 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 246 (337)
+..++...|++++|+..|++.... ...|. .........++.+.|+.++|..+|+++
T Consensus 177 LG~al~~LG~~~eAl~~l~~a~~g-~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a 234 (282)
T 4f3v_A 177 HGVAAANLALFTEAERRLTEANDS-PAGEACARAIAWYLAMARRSQGNESAAVALLEWL 234 (282)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTS-TTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhcC-CCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555666666666666666666321 11132 234445555566666666666666654
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=5e-07 Score=74.28 Aligned_cols=173 Identities=8% Similarity=-0.017 Sum_probs=120.4
Q ss_pred HHHHcCCChhHHHHHHHHHhh--cCcc-cHHHHHHHHHhhc-hhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhc-C-C
Q 037592 60 QGYCQTGDFESVIRIFREMEE--IDLF-SFGIVLRACAGLA-ALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKC-G-C 133 (337)
Q Consensus 60 ~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~ 133 (337)
....+.+..++|+++++++.. |+.. +|+.-..++...+ .+++++..++.++...+ .+..+|+.-..++.+. + +
T Consensus 62 ~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 62 AIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHCCSC
T ss_pred HHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcCCC
Confidence 334455566788888888888 4433 4566666666667 58888888888888766 6677777776666666 6 7
Q ss_pred HHHHHHHHhcCCC---CcHHhHHHHHHHHHhCCCHh--------HHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCc---
Q 037592 134 VDFAHQIFLQMPV---RNLITWNSMISGFAQNGRGE--------EALRIFDDMTEGGTKPDHVSFIGVLSACSHMGL--- 199 (337)
Q Consensus 134 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~--- 199 (337)
+++++++++++.. .+..+|+...-.+.+.|.++ ++++.++++.+..+. |...|+.....+.+.+.
T Consensus 141 ~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp CHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcccccc
Confidence 8888888888873 35566666555555545555 888888888886543 66777776666666665
Q ss_pred ----hhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCh
Q 037592 200 ----IDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLL 236 (337)
Q Consensus 200 ----~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 236 (337)
++++++.++.++... +-|...|+.+-..+.+.|+.
T Consensus 220 ~~~~~~eELe~~~~aI~~~--P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIHLI--PHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCC
T ss_pred chHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCCC
Confidence 677888888876643 55677887777667666653
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.97 E-value=2.1e-08 Score=79.75 Aligned_cols=190 Identities=10% Similarity=-0.079 Sum_probs=101.9
Q ss_pred hhchhhhhHHHHHHHHHhhCCCCchhHHHH-------HHHHHhcCCHHHHHHHHhcCCC--C-------c----------
Q 037592 95 GLAALRLGKEVHCQYIRRSGCKDVIIESAL-------VDLYAKCGCVDFAHQIFLQMPV--R-------N---------- 148 (337)
Q Consensus 95 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~--~-------~---------- 148 (337)
..++...|.+.|.++....+ .....|..+ ...+.+.++..+++..+.+-.. | +
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP-~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDE-SACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhCh-hhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 46677777777777777654 445566655 3444444444444444433331 1 1
Q ss_pred -----HHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCC----
Q 037592 149 -----LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPK---- 219 (337)
Q Consensus 149 -----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---- 219 (337)
...+..+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+.... .|+
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~----~~d~~~~ 170 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGK----WPDKFLA 170 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG----CSCHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhc----cCCcccH
Confidence 112233455566666666666666666543 23333333344455566666666666654421 121
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhcCC---Cc--hhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHH
Q 037592 220 IEHYNCMVDLLGRAGLLEEAETLIENADCR---HD--SSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLL 292 (337)
Q Consensus 220 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 292 (337)
...+..+..++...|++++|+..|++.... |. .........++.+.|+.++|..+|+++...+|+ ...+..|
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 224555666666666666666666654211 21 223344445566666666666666666666666 4444443
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.97 E-value=1.6e-08 Score=84.00 Aligned_cols=95 Identities=12% Similarity=-0.009 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHh-cC-CCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHH
Q 037592 220 IEHYNCMVDLLGRAGLLEEAETLIENA-DC-RHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297 (337)
Q Consensus 220 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 297 (337)
...|..+..+|.+.|++++|+..+++. .. +.+...|..+..+|...|++++|+..|++++++.|++..++..+..++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 467888889999999999999999874 33 3366778888899999999999999999999999999999999999999
Q ss_pred HcCChhhH-HHHHHHHHH
Q 037592 298 AVGRWNDA-FKIRTLMKY 314 (337)
Q Consensus 298 ~~g~~~~A-~~~~~~m~~ 314 (337)
..|++++| ...|+.|..
T Consensus 276 ~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 99999998 446666653
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.95 E-value=5.1e-09 Score=84.73 Aligned_cols=95 Identities=6% Similarity=-0.108 Sum_probs=64.0
Q ss_pred chHhHHHHHHHHHhcCChHHHHHHHHHcc--cC-ChhhHHHHHHHHHcCCChhHHHHHHHHHhh--c-CcccHHHHHHHH
Q 037592 20 NVVVESSLVDMYGKCGLVDESHRVFDKML--KK-NSVSSSALLQGYCQTGDFESVIRIFREMEE--I-DLFSFGIVLRAC 93 (337)
Q Consensus 20 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~ 93 (337)
+...+..+...+.+.|++++|+..|++.+ .| +...|..+..+|.+.|++++|+..+++..+ | +...+..+..++
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34556666777777777777777777763 23 566677777777777777777777777766 3 234556666667
Q ss_pred HhhchhhhhHHHHHHHHHhhC
Q 037592 94 AGLAALRLGKEVHCQYIRRSG 114 (337)
Q Consensus 94 ~~~~~~~~a~~~~~~~~~~~~ 114 (337)
...|++++|...++++++..+
T Consensus 83 ~~~g~~~~A~~~~~~al~l~p 103 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSLAK 103 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCc
Confidence 777777777777777666543
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.91 E-value=2.6e-08 Score=71.64 Aligned_cols=95 Identities=12% Similarity=-0.061 Sum_probs=44.7
Q ss_pred HHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cC-CCchhHHHHHHHHHhcCCC
Q 037592 190 VLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DC-RHDSSLWEVLLGACTTFRN 267 (337)
Q Consensus 190 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~ 267 (337)
+...+.+.|++++|...|+.++... +.+...|..+..+|...|++++|...|++. .. +.+...+..+..++...|+
T Consensus 24 ~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 101 (142)
T 2xcb_A 24 LGFNQYQAGKWDDAQKIFQALCMLD--HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGD 101 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCC
Confidence 3344445555555555555554321 233444445555555555555555555442 11 1223334444444555555
Q ss_pred hhHHHHHHHHHHhcCCCcc
Q 037592 268 AHVAERVAKKIMELKPDCH 286 (337)
Q Consensus 268 ~~~a~~~~~~~~~~~p~~~ 286 (337)
+++|+..|++++++.|+++
T Consensus 102 ~~~A~~~~~~al~~~p~~~ 120 (142)
T 2xcb_A 102 LDGAESGFYSARALAAAQP 120 (142)
T ss_dssp HHHHHHHHHHHHHHHHTCG
T ss_pred HHHHHHHHHHHHHhCCCCc
Confidence 5555555555555444433
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.91 E-value=3.4e-08 Score=75.42 Aligned_cols=151 Identities=15% Similarity=0.057 Sum_probs=72.8
Q ss_pred hcCCHHHHHH---HHhcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhc----CCCC-CHhHHHHHHHHHhhcCchh
Q 037592 130 KCGCVDFAHQ---IFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG----GTKP-DHVSFIGVLSACSHMGLID 201 (337)
Q Consensus 130 ~~g~~~~A~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~ 201 (337)
..|++++|.+ .+..-......++..+...+...|++++|...+++..+. +..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3455555555 443322223445555555666666666666666555441 1111 1233444455555666666
Q ss_pred hHHHHHHHHHHhcCCCC-C----HHHHHHHHHHHHhcCChHHHHHHHHHhc------CCCc--hhHHHHHHHHHhcCCCh
Q 037592 202 RGRKHFASMTKEYRIKP-K----IEHYNCMVDLLGRAGLLEEAETLIENAD------CRHD--SSLWEVLLGACTTFRNA 268 (337)
Q Consensus 202 ~a~~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~~--~~~~~~l~~~~~~~g~~ 268 (337)
+|...+++.+....-.+ + ...+..+...+...|++++|...+++.- ..+. ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 66666655543211111 1 2344555556666666666666655420 0111 12234445556666666
Q ss_pred hHHHHHHHHHHh
Q 037592 269 HVAERVAKKIME 280 (337)
Q Consensus 269 ~~a~~~~~~~~~ 280 (337)
++|...++++.+
T Consensus 164 ~~A~~~~~~al~ 175 (203)
T 3gw4_A 164 LEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666666554
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.91 E-value=1e-08 Score=76.75 Aligned_cols=113 Identities=7% Similarity=0.047 Sum_probs=54.6
Q ss_pred cCCChhHHHHHHHHHhh--c-CcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHH-HHhcCCH--HHH
Q 037592 64 QTGDFESVIRIFREMEE--I-DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDL-YAKCGCV--DFA 137 (337)
Q Consensus 64 ~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~~A 137 (337)
..|++++|+..+++..+ | +...+..+..++...|++++|...++++++..+ .+...+..+..+ +...|++ ++|
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp -----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred hccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCcchHHH
Confidence 34455555555555444 2 223444444555555555555555555555443 344444445554 4455555 555
Q ss_pred HHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHh
Q 037592 138 HQIFLQMP---VRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177 (337)
Q Consensus 138 ~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 177 (337)
+..++++. +.+...+..+...|...|++++|...|+++.+
T Consensus 101 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 101 RAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 55555444 22344455555555555555555555555555
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.90 E-value=2.2e-09 Score=82.07 Aligned_cols=173 Identities=9% Similarity=-0.097 Sum_probs=100.4
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCC---CcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCch
Q 037592 124 LVDLYAKCGCVDFAHQIFLQMPV---RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLI 200 (337)
Q Consensus 124 l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 200 (337)
.+......|+++++.+.++.... .....+..+...+...|++++|+..|++..+.. |+...+...
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~---------- 77 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQ---------- 77 (198)
T ss_dssp ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCH----------
T ss_pred hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcccccchh----------
Confidence 34444555666666666654331 133456666777777777777777777776632 211100000
Q ss_pred hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-c-CCCchhHHHHHHHHHhcCCChhHHHHHHHHH
Q 037592 201 DRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-D-CRHDSSLWEVLLGACTTFRNAHVAERVAKKI 278 (337)
Q Consensus 201 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 278 (337)
....-.. ......+..+..+|...|++++|...+++. . .+.+...+..+..++...|++++|+..|+++
T Consensus 78 -----~~~~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 148 (198)
T 2fbn_A 78 -----ILLDKKK----NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKA 148 (198)
T ss_dssp -----HHHHHHH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred -----hHHHHHH----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 0000000 001356777888888888999988888863 2 2335667788888899999999999999999
Q ss_pred HhcCCCccchHHHHHHHHHHcCChhhHH-HHHHHHHHhCC
Q 037592 279 MELKPDCHLSYVLLDNVYRAVGRWNDAF-KIRTLMKYSGV 317 (337)
Q Consensus 279 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~m~~~~~ 317 (337)
.++.|++...+..+..++...++.+++. ..+..|...+.
T Consensus 149 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~~ 188 (198)
T 2fbn_A 149 ASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKGP 188 (198)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHHHHHC--------------
T ss_pred HHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999998889999999998888888877 56666655443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=1.8e-06 Score=70.63 Aligned_cols=226 Identities=12% Similarity=0.046 Sum_probs=131.4
Q ss_pred cCCChh-HHHHHHHHHhh--cCcc-cHHHHHHHHHhhch----------hhhhHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 037592 64 QTGDFE-SVIRIFREMEE--IDLF-SFGIVLRACAGLAA----------LRLGKEVHCQYIRRSGCKDVIIESALVDLYA 129 (337)
Q Consensus 64 ~~g~~~-~A~~~~~~~~~--~~~~-~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 129 (337)
+.|.++ +|+.+++.+.. |+.. +|+.--.++...+. +++++.+++.++...+ .+..+|+.-.-++.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~P-Kny~aW~hR~wlL~ 119 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLLS 119 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHh
Confidence 344443 66777777766 3332 23332223322222 5677777888777665 56777777666666
Q ss_pred hcC--CHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCC-HhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhc------
Q 037592 130 KCG--CVDFAHQIFLQMP---VRNLITWNSMISGFAQNGR-GEEALRIFDDMTEGGTKPDHVSFIGVLSACSHM------ 197 (337)
Q Consensus 130 ~~g--~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~------ 197 (337)
+.| .+++++.+++++. +.|..+|+.-.-.+...|. ++++++.++++.+..+. |...|+.....+.+.
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~ 198 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDS 198 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC--
T ss_pred ccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhcccc
Confidence 767 4788888887776 4466677777666677777 57888888888876443 566665554444433
Q ss_pred --------CchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-----------CChHHHHHHHHHh-cCCCchhHHHH
Q 037592 198 --------GLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRA-----------GLLEEAETLIENA-DCRHDSSLWEV 257 (337)
Q Consensus 198 --------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~-~~~~~~~~~~~ 257 (337)
+.++++++.+..++... +-|..+|+.+-..+.+. +.++++++.++++ ...|+. .|..
T Consensus 199 ~~~~~~~~~~~~eEle~~~~ai~~~--P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~-~w~l 275 (331)
T 3dss_A 199 GPQGRLPENVLLKELELVQNAFFTD--PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN-KWCL 275 (331)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHH
T ss_pred ccccccchHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-chHH
Confidence 44677777777776543 55566676555444444 2345555555543 333443 2332
Q ss_pred HHH-----HHhcCCChhHHHHHHHHHHhcCCCccchHHHHHH
Q 037592 258 LLG-----ACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDN 294 (337)
Q Consensus 258 l~~-----~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 294 (337)
+.. +....|..++....+.++++++|....-|..+..
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~ 317 (331)
T 3dss_A 276 LTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 317 (331)
T ss_dssp HHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 111 1223455566666666666666665444444433
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=4.3e-07 Score=74.63 Aligned_cols=227 Identities=12% Similarity=0.088 Sum_probs=161.8
Q ss_pred HhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcC-CHHHHHHHHhcCC---CCcHHhHHHHHHHHHhC-C-CHhH
Q 037592 94 AGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCG-CVDFAHQIFLQMP---VRNLITWNSMISGFAQN-G-RGEE 167 (337)
Q Consensus 94 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~-~-~~~~ 167 (337)
...+..++|+.++.+++..++ .+..+|+.-..++...| .+++++.+++.+. +.+..+|+.-...+... + ++++
T Consensus 65 ~~~e~se~AL~lt~~~L~~nP-~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMNP-AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred HhCCCCHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHH
Confidence 344455789999999999876 67788888888888888 5999999999887 44667888776666665 6 8899
Q ss_pred HHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchh--------hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC----
Q 037592 168 ALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLID--------RGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL---- 235 (337)
Q Consensus 168 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---- 235 (337)
++.+++++.+...+ +..+|+.-.-...+.|.++ ++++.++++++.. +-|...|+.....+.+.++
T Consensus 144 EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d--p~N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 144 EIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD--GRNNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccccc
Confidence 99999999886433 6666665554555555555 8999999998754 5678899888888888776
Q ss_pred ---hHHHHHHHHHh-c-CCCchhHHHHHHHHHhcCCCh--------------------hHHHHHHHHHHhcC------CC
Q 037592 236 ---LEEAETLIENA-D-CRHDSSLWEVLLGACTTFRNA--------------------HVAERVAKKIMELK------PD 284 (337)
Q Consensus 236 ---~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~--------------------~~a~~~~~~~~~~~------p~ 284 (337)
++++++.+++. . .+.|...|+.+-..+.+.|+. .....+..++.... +.
T Consensus 221 ~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (349)
T 3q7a_A 221 SRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLP 300 (349)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSC
T ss_pred hHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCC
Confidence 67888888763 3 334667787776666666554 22333333332222 45
Q ss_pred ccchHHHHHHHHHHcCChhhHHHHHHHHHHhCCccCCCCcc
Q 037592 285 CHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSW 325 (337)
Q Consensus 285 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 325 (337)
++.+...|+..|.+.|+.++|.++++.+.+ ...|.....|
T Consensus 301 s~~al~~l~d~~~~~~~~~~a~~~~~~l~~-~~dpir~~yw 340 (349)
T 3q7a_A 301 VPLALEYLADSFIEQNRVDDAAKVFEKLSS-EYDQMRAGYW 340 (349)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCGGGHHHH
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-hhChHHHHHH
Confidence 577888999999999999999999999753 3444444444
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.90 E-value=2.7e-08 Score=69.81 Aligned_cols=93 Identities=12% Similarity=-0.003 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHh-cC-CCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHc
Q 037592 222 HYNCMVDLLGRAGLLEEAETLIENA-DC-RHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAV 299 (337)
Q Consensus 222 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 299 (337)
.+..+...+.+.|++++|...|++. .. +.+...|..+..++...|++++|+..++++++++|+++..|..++.++...
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 85 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAV 85 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 3344444455555555555555442 11 123344444555555555555555555555555555555555555555555
Q ss_pred CChhhHHHHHHHHHH
Q 037592 300 GRWNDAFKIRTLMKY 314 (337)
Q Consensus 300 g~~~~A~~~~~~m~~ 314 (337)
|++++|...|++..+
T Consensus 86 ~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 86 KEYASALETLDAART 100 (126)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHH
Confidence 555555555555544
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.88 E-value=1e-07 Score=69.02 Aligned_cols=99 Identities=9% Similarity=-0.022 Sum_probs=82.3
Q ss_pred hHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cCCC-chhHHHHHHHHH
Q 037592 185 VSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DCRH-DSSLWEVLLGAC 262 (337)
Q Consensus 185 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~ 262 (337)
..+..+...+.+.|++++|...|+.++... +.+...|..+..+|...|++++|...|++. ...| ++..|..+..+|
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYD--FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 456667778889999999999999997653 456888899999999999999999999874 3333 466788888999
Q ss_pred hcCCChhHHHHHHHHHHhcCCCc
Q 037592 263 TTFRNAHVAERVAKKIMELKPDC 285 (337)
Q Consensus 263 ~~~g~~~~a~~~~~~~~~~~p~~ 285 (337)
...|++++|+..|++++++.|++
T Consensus 115 ~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCH
Confidence 99999999999999999999984
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=1.7e-08 Score=73.21 Aligned_cols=90 Identities=9% Similarity=-0.039 Sum_probs=38.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhc
Q 037592 121 ESALVDLYAKCGCVDFAHQIFLQMP---VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHM 197 (337)
Q Consensus 121 ~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 197 (337)
+..+...+.+.|++++|+..|++.. +.+...|..+..+|...|++++|+..|++...... .+...+..+..++...
T Consensus 24 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~ 102 (148)
T 2vgx_A 24 LYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPFHAAECLLQX 102 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHc
Confidence 3334444444444444444444433 22333444444444444444444444444444211 1223333344444444
Q ss_pred CchhhHHHHHHHHH
Q 037592 198 GLIDRGRKHFASMT 211 (337)
Q Consensus 198 ~~~~~a~~~~~~~~ 211 (337)
|++++|...|+.++
T Consensus 103 g~~~~A~~~~~~al 116 (148)
T 2vgx_A 103 GELAEAESGLFLAQ 116 (148)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 44444444444443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.87 E-value=6.7e-08 Score=71.10 Aligned_cols=126 Identities=10% Similarity=-0.035 Sum_probs=57.5
Q ss_pred hHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 037592 151 TWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLL 230 (337)
Q Consensus 151 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 230 (337)
.+..+...+...|++++|...|++..+... .+...+..+...+...|++++|...++.+++.. +.+...+..+..++
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHH
Confidence 344444455555555555555555544321 133444444445555555555555555554321 23344455555555
Q ss_pred HhcCChHHHHHHHHHh-cCCC-chhHHHH--HHHHHhcCCChhHHHHHHHHHH
Q 037592 231 GRAGLLEEAETLIENA-DCRH-DSSLWEV--LLGACTTFRNAHVAERVAKKIM 279 (337)
Q Consensus 231 ~~~g~~~~A~~~~~~~-~~~~-~~~~~~~--l~~~~~~~g~~~~a~~~~~~~~ 279 (337)
...|++++|...|++. ...| +...+.. ....+...|++++|+..+.+..
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 5555555555555542 1111 2222211 2222444555555555555443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.86 E-value=2.6e-08 Score=67.93 Aligned_cols=96 Identities=18% Similarity=0.105 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHh-c-CCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCC--ccchHHHHHHHHH
Q 037592 222 HYNCMVDLLGRAGLLEEAETLIENA-D-CRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPD--CHLSYVLLDNVYR 297 (337)
Q Consensus 222 ~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~ 297 (337)
.+..+...+...|++++|...+++. . .+.+...+..+...+...|++++|+..++++.+..|+ +...+..++.++.
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~ 87 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALR 87 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHH
Confidence 4444555555555555555555542 1 1223444555555566666666666666666666666 5666666666666
Q ss_pred Hc-CChhhHHHHHHHHHHhCC
Q 037592 298 AV-GRWNDAFKIRTLMKYSGV 317 (337)
Q Consensus 298 ~~-g~~~~A~~~~~~m~~~~~ 317 (337)
.. |++++|.+.+++......
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 88 YIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp TCSSCSHHHHHHHHHHGGGCC
T ss_pred HHhCCHHHHHHHHHHHhhccc
Confidence 66 666666666666655443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.85 E-value=7.2e-08 Score=67.97 Aligned_cols=114 Identities=7% Similarity=-0.038 Sum_probs=83.9
Q ss_pred CCchHhHHHHHHHHHhcCChHHHHHHHHHcccC---ChhhHHHHHHHHHcCCChhHHHHHHHHHhh--c-CcccHHHHHH
Q 037592 18 CGNVVVESSLVDMYGKCGLVDESHRVFDKMLKK---NSVSSSALLQGYCQTGDFESVIRIFREMEE--I-DLFSFGIVLR 91 (337)
Q Consensus 18 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~ 91 (337)
+.+...+..+...+.+.|++++|+..|++.... +...+..+..++...|++++|++.++++.+ | +...+..+..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 445667788888888888888888888887432 566778888888888888888888888877 3 3456677777
Q ss_pred HHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcC
Q 037592 92 ACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCG 132 (337)
Q Consensus 92 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 132 (337)
++...|++++|...+++.++..+ .+...+..+..++.+.|
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDS-SCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCG-GGTHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHhc
Confidence 78888888888888888877654 44556666666666554
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=2.2e-06 Score=70.06 Aligned_cols=219 Identities=11% Similarity=0.029 Sum_probs=157.2
Q ss_pred Hhhchhh-hhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCC----------HHHHHHHHhcCC---CCcHHhHHHHHHHH
Q 037592 94 AGLAALR-LGKEVHCQYIRRSGCKDVIIESALVDLYAKCGC----------VDFAHQIFLQMP---VRNLITWNSMISGF 159 (337)
Q Consensus 94 ~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~---~~~~~~~~~l~~~~ 159 (337)
.+.|.+. +|+.+...++..++ .+..+|+.--.++...+. +++++.+++.+. +.+..+|+.-.-.+
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP-~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL 118 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL 118 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4556554 79999999998876 566677765444444443 678888888876 45778888877777
Q ss_pred HhCC--CHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCc-hhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc---
Q 037592 160 AQNG--RGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGL-IDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRA--- 233 (337)
Q Consensus 160 ~~~~--~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 233 (337)
...+ .+++++.+++++.+.... |..+|+.-.-.....|. ++++++.++.+++.. +-|...|+.....+...
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~--p~N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FSNYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHHSCC
T ss_pred hccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhhhc
Confidence 7777 489999999999987544 66777766666667777 589999999998754 66788888777666654
Q ss_pred -----------CChHHHHHHHHHh-c-CCCchhHHHHHHHHHhcC-----------CChhHHHHHHHHHHhcCCCccchH
Q 037592 234 -----------GLLEEAETLIENA-D-CRHDSSLWEVLLGACTTF-----------RNAHVAERVAKKIMELKPDCHLSY 289 (337)
Q Consensus 234 -----------g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~~~~ 289 (337)
+.++++++.+++. . .+.|...|+.+-..+... +.++++++.++++.+..|++.-++
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l 275 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCL 275 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHH
Confidence 4577888888763 3 344666777665555444 457899999999999999974443
Q ss_pred HHHHHHH---HHcCChhhHHHHHHHHHHhC
Q 037592 290 VLLDNVY---RAVGRWNDAFKIRTLMKYSG 316 (337)
Q Consensus 290 ~~l~~~~---~~~g~~~~A~~~~~~m~~~~ 316 (337)
..++... ...|..+++...+.++.+-+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 276 LTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp HHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 3333221 24577788889999988743
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.84 E-value=3e-08 Score=82.43 Aligned_cols=93 Identities=11% Similarity=-0.097 Sum_probs=60.3
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHH
Q 037592 118 VIIESALVDLYAKCGCVDFAHQIFLQMP---VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSAC 194 (337)
Q Consensus 118 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 194 (337)
..++..+..+|.+.|++++|+..+++.. +.+..+|..+..+|...|++++|+..|++..+... .+...+..+..++
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~ 274 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-NNKAAKTQLAVCQ 274 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHH
Confidence 3566667777777777777777776665 33556677777777777777777777777766422 2445566666666
Q ss_pred hhcCchhhH-HHHHHHHH
Q 037592 195 SHMGLIDRG-RKHFASMT 211 (337)
Q Consensus 195 ~~~~~~~~a-~~~~~~~~ 211 (337)
...|+.++| ...++.|.
T Consensus 275 ~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 275 QRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 677777766 34555554
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.84 E-value=1.1e-07 Score=66.14 Aligned_cols=109 Identities=17% Similarity=0.138 Sum_probs=74.7
Q ss_pred hHhHHHHHHHHHhcCChHHHHHHHHHccc---CChhhHHHHHHHHHcCCChhHHHHHHHHHhh--c-CcccHHHHHHHHH
Q 037592 21 VVVESSLVDMYGKCGLVDESHRVFDKMLK---KNSVSSSALLQGYCQTGDFESVIRIFREMEE--I-DLFSFGIVLRACA 94 (337)
Q Consensus 21 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~ 94 (337)
...+..+...+...|++++|.+.|+++.. .+...+..+...+...|++++|..+++++.+ | +..++..+..++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 45677777778888888888888877732 2456677777778888888888888877776 2 3445666677777
Q ss_pred hhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHh
Q 037592 95 GLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAK 130 (337)
Q Consensus 95 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 130 (337)
..|++++|...++++++..+ .+...+..+..++..
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDP-NNAEAKQNLGNAKQK 123 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHh
Confidence 77777777777777776654 444555555554443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.83 E-value=1.8e-07 Score=64.21 Aligned_cols=107 Identities=12% Similarity=-0.004 Sum_probs=57.8
Q ss_pred HHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cCC-CchhHHHHHHHHHh
Q 037592 186 SFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DCR-HDSSLWEVLLGACT 263 (337)
Q Consensus 186 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~ 263 (337)
.+..+...+...|++++|...++.++... +.+...+..+..++...|++++|...+++. ... .+...+..+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 34444445555555555555555554321 234455555555555566666666655542 112 23444555556666
Q ss_pred cCCChhHHHHHHHHHHhcCCCccchHHHHHH
Q 037592 264 TFRNAHVAERVAKKIMELKPDCHLSYVLLDN 294 (337)
Q Consensus 264 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 294 (337)
..|++++|...++++.+..|+++..+..+..
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 114 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQN 114 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 6666666666666666666665555444443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.83 E-value=5.4e-08 Score=68.29 Aligned_cols=114 Identities=11% Similarity=-0.008 Sum_probs=79.7
Q ss_pred chHhHHHHHHHHHhcCChHHHHHHHHHcc--cC-ChhhHHHHHHHHHcCCChhHHHHHHHHHhh--cC-cccHHHHHHHH
Q 037592 20 NVVVESSLVDMYGKCGLVDESHRVFDKML--KK-NSVSSSALLQGYCQTGDFESVIRIFREMEE--ID-LFSFGIVLRAC 93 (337)
Q Consensus 20 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~ 93 (337)
+...+..+...+...|++++|...|++.. .| +...+..+..++...|++++|.+.+++..+ |+ ...+..+..++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 45566777777788888888888887763 22 566677777778888888888888887776 33 44566666777
Q ss_pred HhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCH
Q 037592 94 AGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCV 134 (337)
Q Consensus 94 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 134 (337)
...|++++|...+++.++..+ .+...+..+..++.+.|++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHhcC
Confidence 777777777777777777654 4556666666666666553
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.83 E-value=9.4e-08 Score=67.94 Aligned_cols=96 Identities=9% Similarity=-0.022 Sum_probs=50.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHh-cC-CCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHH
Q 037592 219 KIEHYNCMVDLLGRAGLLEEAETLIENA-DC-RHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296 (337)
Q Consensus 219 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 296 (337)
+...+..+...+...|++++|...|++. .. +.+...|..+..++...|++++|+..++++.+..|+++..+..++.++
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 3444555555555555555555555542 11 223344455555555555555555555555555555555555555555
Q ss_pred HHcCChhhHHHHHHHHHH
Q 037592 297 RAVGRWNDAFKIRTLMKY 314 (337)
Q Consensus 297 ~~~g~~~~A~~~~~~m~~ 314 (337)
...|++++|...|++..+
T Consensus 88 ~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 555555555555555544
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.2e-07 Score=66.42 Aligned_cols=108 Identities=10% Similarity=-0.095 Sum_probs=62.8
Q ss_pred HHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cCCC-chhHHHHHHHHHh
Q 037592 186 SFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DCRH-DSSLWEVLLGACT 263 (337)
Q Consensus 186 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~ 263 (337)
.+......+.+.|++++|...|+++++.. +.+...+..+..+|.+.|++++|...+++. ...| +...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 34444555556666666666666665432 334556666666666666666666666652 2222 3445666666666
Q ss_pred cCCChhHHHHHHHHHHhcC------CCccchHHHHHHH
Q 037592 264 TFRNAHVAERVAKKIMELK------PDCHLSYVLLDNV 295 (337)
Q Consensus 264 ~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~ 295 (337)
..|++++|+..++++.++. |++......+..+
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~ 121 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 121 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHH
Confidence 7777777777777777666 6655555444443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.81 E-value=9.4e-07 Score=75.95 Aligned_cols=185 Identities=9% Similarity=-0.088 Sum_probs=121.6
Q ss_pred HHHHHhcCChHHHHHHHHHcccCC--------------------hhhHHHHHHHHHcCCChhHHHHHHHHHhh--cC---
Q 037592 28 VDMYGKCGLVDESHRVFDKMLKKN--------------------SVSSSALLQGYCQTGDFESVIRIFREMEE--ID--- 82 (337)
Q Consensus 28 ~~~~~~~~~~~~A~~~~~~~~~~~--------------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~--- 82 (337)
...+.+.|++++|++.|..+.+.+ ..++..++..|...|++++|.+++.++.. +.
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 455677888888888888773220 11366778888888888888888888776 11
Q ss_pred c----ccHHHHHHHHHhhchhhhhHHHHHHHHHhhCC----C-CchhHHHHHHHHHhcCCHHHHHHHHhcCC--------
Q 037592 83 L----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGC----K-DVIIESALVDLYAKCGCVDFAHQIFLQMP-------- 145 (337)
Q Consensus 83 ~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------- 145 (337)
. .+.+.+...+...|+++.+..++++....... + -..++..+...|...|++++|..++++..
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 11222333444567788888888777654221 1 13566778888888888888888877654
Q ss_pred CC-cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhc--CC-CC-C--HhHHHHHHHHHhhcCchhhHHHHHHHHHH
Q 037592 146 VR-NLITWNSMISGFAQNGRGEEALRIFDDMTEG--GT-KP-D--HVSFIGVLSACSHMGLIDRGRKHFASMTK 212 (337)
Q Consensus 146 ~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~-~p-~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 212 (337)
.+ ...++..++..|...|++++|..++++.... .+ .| . ...+..+...+...|++++|...+.++.+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11 2346777888888888888888888876542 11 11 1 13344555666777888888887777654
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.81 E-value=6.5e-08 Score=71.34 Aligned_cols=109 Identities=12% Similarity=-0.050 Sum_probs=91.1
Q ss_pred CHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cCCC-chhHHHHHHH
Q 037592 183 DHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DCRH-DSSLWEVLLG 260 (337)
Q Consensus 183 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~ 260 (337)
+...+..+...+...|++++|+..|+++++.. +.+...+..+..+|...|++++|+..|++. ...| +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 44567778888999999999999999997653 457888999999999999999999999974 3333 5677888889
Q ss_pred HHhcCCChhHHHHHHHHHHhcCCCccchHHHHH
Q 037592 261 ACTTFRNAHVAERVAKKIMELKPDCHLSYVLLD 293 (337)
Q Consensus 261 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 293 (337)
++...|++++|+..|++++++.|++...+....
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 999999999999999999999999887655444
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.81 E-value=3.4e-08 Score=68.84 Aligned_cols=93 Identities=14% Similarity=-0.073 Sum_probs=71.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHh-cCCC-chhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcC
Q 037592 223 YNCMVDLLGRAGLLEEAETLIENA-DCRH-DSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVG 300 (337)
Q Consensus 223 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 300 (337)
+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.++...|
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 445566777788888888888763 3333 56667777777888888888888888888888888888888888888888
Q ss_pred ChhhHHHHHHHHHHh
Q 037592 301 RWNDAFKIRTLMKYS 315 (337)
Q Consensus 301 ~~~~A~~~~~~m~~~ 315 (337)
++++|+..+++..+.
T Consensus 100 ~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 100 NANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHh
Confidence 888888888877654
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.81 E-value=8.6e-08 Score=68.84 Aligned_cols=95 Identities=9% Similarity=-0.106 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHh-cC-CCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHH
Q 037592 221 EHYNCMVDLLGRAGLLEEAETLIENA-DC-RHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRA 298 (337)
Q Consensus 221 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 298 (337)
..+..+...+.+.|++++|...|++. .. +.+...|..+..++...|++++|+..|+++.+++|+++..+..++.+|..
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 34445555666666666666666653 22 22444555556666666666666666666666666666666666666666
Q ss_pred cCChhhHHHHHHHHHHh
Q 037592 299 VGRWNDAFKIRTLMKYS 315 (337)
Q Consensus 299 ~g~~~~A~~~~~~m~~~ 315 (337)
.|++++|...|++..+.
T Consensus 99 ~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 99 LGDLDGAESGFYSARAL 115 (142)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 66666666666666554
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.80 E-value=1.8e-07 Score=68.86 Aligned_cols=96 Identities=8% Similarity=-0.049 Sum_probs=73.5
Q ss_pred cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 037592 148 NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMV 227 (337)
Q Consensus 148 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 227 (337)
+...+..+...+...|++++|+..|++..+... .+...+..+..++...|++++|+..++.+++.. +.+...|..+.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAP-ANPIYLSNRAAAYSASGQHEKAAEDAELATVVD--PKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence 445677788888888888888888888877532 256677777788888888888888888886542 44577788888
Q ss_pred HHHHhcCChHHHHHHHHHh
Q 037592 228 DLLGRAGLLEEAETLIENA 246 (337)
Q Consensus 228 ~~~~~~g~~~~A~~~~~~~ 246 (337)
.+|...|++++|...|++.
T Consensus 87 ~~~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHH
Confidence 8888888888888888763
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.79 E-value=5.5e-07 Score=77.39 Aligned_cols=159 Identities=9% Similarity=-0.019 Sum_probs=72.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCC-----CcH----HhHHHHHHHHHhCCCHhHHHHHHHHHHh----cCCCCC-HhHH
Q 037592 122 SALVDLYAKCGCVDFAHQIFLQMPV-----RNL----ITWNSMISGFAQNGRGEEALRIFDDMTE----GGTKPD-HVSF 187 (337)
Q Consensus 122 ~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~----~~~~p~-~~~~ 187 (337)
..++..|...|++++|.+.+.++.. ++. .+.+.+...+...|++++|..+++.... .+..+. ..++
T Consensus 59 ~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 138 (434)
T 4b4t_Q 59 LELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLS 138 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHH
Confidence 3445555555555555555554431 111 1222222333344555555555555432 111221 2234
Q ss_pred HHHHHHHhhcCchhhHHHHHHHHHHhcCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHh-------cCCCc--hhH
Q 037592 188 IGVLSACSHMGLIDRGRKHFASMTKEYRIKP----KIEHYNCMVDLLGRAGLLEEAETLIENA-------DCRHD--SSL 254 (337)
Q Consensus 188 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~--~~~ 254 (337)
..+...+...|++++|..+++.+........ ...++..++..|...|++++|..++++. +..+. ...
T Consensus 139 ~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 218 (434)
T 4b4t_Q 139 IKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAEL 218 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHH
Confidence 4455555556666666666555543211111 1344555555666666666666655542 11111 122
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHh
Q 037592 255 WEVLLGACTTFRNAHVAERVAKKIME 280 (337)
Q Consensus 255 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 280 (337)
+..+...+...|++++|...|.++.+
T Consensus 219 ~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 219 DLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 33344445555666666655555543
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.79 E-value=6.7e-08 Score=67.95 Aligned_cols=96 Identities=11% Similarity=0.056 Sum_probs=44.3
Q ss_pred HHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cCCCc--------hhHHHH
Q 037592 187 FIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DCRHD--------SSLWEV 257 (337)
Q Consensus 187 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~--------~~~~~~ 257 (337)
+..+...+.+.|++++|+..|+++++.. +.+...|..+..+|...|++++|++.+++. ...|+ ..+|..
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~--p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD--PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 3444455555555555555555554321 223444555555555555555555555432 11111 112333
Q ss_pred HHHHHhcCCChhHHHHHHHHHHhcCCC
Q 037592 258 LLGACTTFRNAHVAERVAKKIMELKPD 284 (337)
Q Consensus 258 l~~~~~~~g~~~~a~~~~~~~~~~~p~ 284 (337)
+..++...|++++|++.|+++++..|+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 444444555555555555555544444
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.8e-07 Score=67.29 Aligned_cols=106 Identities=10% Similarity=-0.061 Sum_probs=54.8
Q ss_pred HhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHh-cCCC-chhHHHH
Q 037592 184 HVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPK----IEHYNCMVDLLGRAGLLEEAETLIENA-DCRH-DSSLWEV 257 (337)
Q Consensus 184 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~ 257 (337)
...+..+...+...|++++|...|+.+++ ..|+ ...+..+..+|...|++++|...+++. ...| +...+..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 33444455555556666666666665542 2333 345555555555555555555555542 2222 3344445
Q ss_pred HHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHH
Q 037592 258 LLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLL 292 (337)
Q Consensus 258 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 292 (337)
+..++...|++++|...++++.+..|++...+..+
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 139 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEAL 139 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHH
Confidence 55555555555555555555555555544444333
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.4e-07 Score=66.25 Aligned_cols=94 Identities=7% Similarity=-0.046 Sum_probs=45.7
Q ss_pred hHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcC-CCCC----HHHHHH
Q 037592 151 TWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYR-IKPK----IEHYNC 225 (337)
Q Consensus 151 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~~ 225 (337)
++..+...+.+.|++++|+..|++.++..+ .+...|..+..+|...|++++|+..++.+++... ..++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p-~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDP-SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 344555555555555555555555555321 1334444455555555555555555555543210 0011 124444
Q ss_pred HHHHHHhcCChHHHHHHHHH
Q 037592 226 MVDLLGRAGLLEEAETLIEN 245 (337)
Q Consensus 226 l~~~~~~~g~~~~A~~~~~~ 245 (337)
+..++...|++++|++.|++
T Consensus 89 lg~~~~~~~~~~~A~~~~~k 108 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHR 108 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHH
Confidence 55555555555555555554
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.76 E-value=9.3e-09 Score=78.55 Aligned_cols=159 Identities=8% Similarity=-0.062 Sum_probs=73.2
Q ss_pred HHHHHHhcCChHHHHHHHHHcccC---ChhhHHHHHHHHHcCCChhHHHHHHHHHhh--cCcccHHHHHHHHHhhchhhh
Q 037592 27 LVDMYGKCGLVDESHRVFDKMLKK---NSVSSSALLQGYCQTGDFESVIRIFREMEE--IDLFSFGIVLRACAGLAALRL 101 (337)
Q Consensus 27 l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~ 101 (337)
.+......|+++.+.+.|+..... ....+..+...+...|++++|+..|++..+ |+...+... .
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~--------~--- 78 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQ--------I--- 78 (198)
T ss_dssp ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCH--------H---
T ss_pred hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchh--------h---
Confidence 344445556666666665433221 344566667777777777777777777765 222100000 0
Q ss_pred hHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhc
Q 037592 102 GKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP---VRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178 (337)
Q Consensus 102 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 178 (337)
..-... .....++..+..+|.+.|++++|+..+++.. +.+...+..+..+|...|++++|...|++..+.
T Consensus 79 -~~~~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 79 -LLDKKK------NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp -HHHHHH------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -HHHHHH------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 000000 0002344555555666666666666555544 234455555666666666666666666666553
Q ss_pred CCCCCHhHHHHHHHHHhhcCchhhHH
Q 037592 179 GTKPDHVSFIGVLSACSHMGLIDRGR 204 (337)
Q Consensus 179 ~~~p~~~~~~~l~~~~~~~~~~~~a~ 204 (337)
.. .+...+..+..++...++.+++.
T Consensus 152 ~p-~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 152 NP-NNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp ST-TCHHHHHHHHHHHHHHHHHHC--
T ss_pred CC-CcHHHHHHHHHHHHHHHHHHHHH
Confidence 21 13344444445555555555544
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.75 E-value=1.6e-07 Score=64.44 Aligned_cols=98 Identities=15% Similarity=0.100 Sum_probs=86.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHh-c-CCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHH
Q 037592 219 KIEHYNCMVDLLGRAGLLEEAETLIENA-D-CRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296 (337)
Q Consensus 219 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 296 (337)
....+..++..+...|++++|...+++. . .+.+...+..+...+...|++++|...++++.+..|+++..+..++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3457788889999999999999999974 2 3336677888888999999999999999999999999999999999999
Q ss_pred HHcCChhhHHHHHHHHHHhC
Q 037592 297 RAVGRWNDAFKIRTLMKYSG 316 (337)
Q Consensus 297 ~~~g~~~~A~~~~~~m~~~~ 316 (337)
...|++++|...+++..+.+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTC
T ss_pred HHHhhHHHHHHHHHHHHHcC
Confidence 99999999999999987654
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.74 E-value=1e-07 Score=68.59 Aligned_cols=62 Identities=16% Similarity=0.021 Sum_probs=53.1
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHhc-------CCCccchH----HHHHHHHHHcCChhhHHHHHHHHHHh
Q 037592 254 LWEVLLGACTTFRNAHVAERVAKKIMEL-------KPDCHLSY----VLLDNVYRAVGRWNDAFKIRTLMKYS 315 (337)
Q Consensus 254 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~~ 315 (337)
.|..+..++.+.|++++|+..+++++++ +|++..+| ...+.++...|++++|+..|++..+.
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 6777778888888888888888888888 99988888 89999999999999999999888764
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.73 E-value=4.1e-07 Score=65.35 Aligned_cols=92 Identities=10% Similarity=0.020 Sum_probs=42.0
Q ss_pred HhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCC----HhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHH
Q 037592 150 ITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPD----HVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNC 225 (337)
Q Consensus 150 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 225 (337)
..+..+...+...|++++|...|++..+. .|+ ...+..+..++...|++++|...++.+++.. +.+...+..
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~ 104 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD--GGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--SCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--ccCHHHHHH
Confidence 34444444445555555555555554442 232 2334444444444555555555554443321 223444444
Q ss_pred HHHHHHhcCChHHHHHHHHH
Q 037592 226 MVDLLGRAGLLEEAETLIEN 245 (337)
Q Consensus 226 l~~~~~~~g~~~~A~~~~~~ 245 (337)
+..++...|++++|...|++
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~ 124 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQR 124 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHH
Confidence 44445555555555555443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.71 E-value=3.8e-07 Score=61.91 Aligned_cols=99 Identities=10% Similarity=-0.036 Sum_probs=63.4
Q ss_pred hHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cCCC---chhHHHHHHH
Q 037592 185 VSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DCRH---DSSLWEVLLG 260 (337)
Q Consensus 185 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~---~~~~~~~l~~ 260 (337)
..+..+...+...|++++|...++.+++.. +.+...+..+..++...|++++|...+++. ...| +...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 344455556666677777777776665432 334556666677777777777777777653 2333 3556666667
Q ss_pred HHhcC-CChhHHHHHHHHHHhcCCCc
Q 037592 261 ACTTF-RNAHVAERVAKKIMELKPDC 285 (337)
Q Consensus 261 ~~~~~-g~~~~a~~~~~~~~~~~p~~ 285 (337)
++... |++++|.+.++++....|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 77777 77777777777777776664
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.71 E-value=3e-07 Score=65.27 Aligned_cols=100 Identities=7% Similarity=-0.130 Sum_probs=57.6
Q ss_pred CHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cC-CCchhHHHHHHH
Q 037592 183 DHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DC-RHDSSLWEVLLG 260 (337)
Q Consensus 183 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~ 260 (337)
+...+..+...+...|++++|...|+.++... +.+...+..+..++...|++++|...+++. .. +.+...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 34455555555666666666666666654432 334555666666666666666666666552 21 223445556666
Q ss_pred HHhcCCChhHHHHHHHHHHhcCCC
Q 037592 261 ACTTFRNAHVAERVAKKIMELKPD 284 (337)
Q Consensus 261 ~~~~~g~~~~a~~~~~~~~~~~p~ 284 (337)
++...|++++|+..++++.+..|+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 666666666666666666665554
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.70 E-value=2.4e-07 Score=65.00 Aligned_cols=99 Identities=11% Similarity=0.007 Sum_probs=63.7
Q ss_pred HHHHHHhhcCchhhHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHh-cCCCc----hhHHHHHHH
Q 037592 189 GVLSACSHMGLIDRGRKHFASMTKEYRIKPKI---EHYNCMVDLLGRAGLLEEAETLIENA-DCRHD----SSLWEVLLG 260 (337)
Q Consensus 189 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~ 260 (337)
.+...+...|++++|...++.+++.. +.+. ..+..+..++...|++++|...|++. ...|+ ...+..+..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 34556667777777777777776542 2222 46666777777777777777777763 22232 344556666
Q ss_pred HHhcCCChhHHHHHHHHHHhcCCCccchH
Q 037592 261 ACTTFRNAHVAERVAKKIMELKPDCHLSY 289 (337)
Q Consensus 261 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 289 (337)
++...|++++|...++++.+..|+++...
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 113 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAAR 113 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHHH
Confidence 67777777777777777777777754433
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.70 E-value=3.4e-07 Score=79.35 Aligned_cols=129 Identities=9% Similarity=-0.026 Sum_probs=93.8
Q ss_pred HHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCC-------------CHHHHHHHHHHHHhcCChHHHHHHHHHh-cC-CC
Q 037592 186 SFIGVLSACSHMGLIDRGRKHFASMTKEYRIKP-------------KIEHYNCMVDLLGRAGLLEEAETLIENA-DC-RH 250 (337)
Q Consensus 186 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~ 250 (337)
.+..+...+.+.|++++|...|+++++.....+ ....|..+..+|.+.|++++|+..+++. .. +.
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 349 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA 349 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Confidence 444555566666666666666666654321111 1578888999999999999999999874 33 33
Q ss_pred chhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHH-HHHHHHH
Q 037592 251 DSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFK-IRTLMKY 314 (337)
Q Consensus 251 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~-~~~~m~~ 314 (337)
+...|..+..+|...|++++|+..|+++++++|++..++..+..++...++.+++.+ .+..|..
T Consensus 350 ~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 350 NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567788888999999999999999999999999999999999999999999888774 4555543
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.67 E-value=1.2e-07 Score=82.52 Aligned_cols=118 Identities=8% Similarity=-0.057 Sum_probs=90.6
Q ss_pred HHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cCCC-chhHHHHHHHHHhcCCCh
Q 037592 191 LSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DCRH-DSSLWEVLLGACTTFRNA 268 (337)
Q Consensus 191 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~ 268 (337)
...+.+.|++++|.+.++++++.. +.+..++..+..+|.+.|++++|.+.+++. ...| +...+..+..+|...|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 344567788888888888886542 445778888888888888888888888874 3333 456778888889999999
Q ss_pred hHHHHHHHHHHhcCCCccchHHHHHHH--HHHcCChhhHHHHHH
Q 037592 269 HVAERVAKKIMELKPDCHLSYVLLDNV--YRAVGRWNDAFKIRT 310 (337)
Q Consensus 269 ~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 310 (337)
++|++.++++.+..|++...+..+..+ +.+.|++++|++.++
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999988888888777 888899999999887
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.67 E-value=3.2e-07 Score=64.30 Aligned_cols=107 Identities=10% Similarity=-0.003 Sum_probs=57.1
Q ss_pred HHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cC----CCc----hhHHHH
Q 037592 187 FIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DC----RHD----SSLWEV 257 (337)
Q Consensus 187 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----~~~----~~~~~~ 257 (337)
+..+...+...|++++|...++.++... +.+...+..+...+...|++++|...+++. .. .++ ...+..
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 3344444555555555555555554321 233445555555555555555555555542 11 111 444555
Q ss_pred HHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHH
Q 037592 258 LLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296 (337)
Q Consensus 258 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 296 (337)
+..++...|++++|...++++.+..|+ +.....+..+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~ 122 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCC-HHHHHHHHHHH
Confidence 666667777777777777777776664 45544444443
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.66 E-value=1.8e-05 Score=69.13 Aligned_cols=200 Identities=12% Similarity=0.010 Sum_probs=129.2
Q ss_pred hHHHHHHHHHhh--cC-cccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHH-HHHHHhcC
Q 037592 69 ESVIRIFREMEE--ID-LFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDF-AHQIFLQM 144 (337)
Q Consensus 69 ~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~ 144 (337)
+.+..+|+++.. |. ...|...+..+.+.|+.+.|..++++++.. + .+...+.. |....+.++ ...+.+..
T Consensus 196 ~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P-~~~~l~~~----y~~~~e~~~~~~~l~~~~ 269 (493)
T 2uy1_A 196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-S-DGMFLSLY----YGLVMDEEAVYGDLKRKY 269 (493)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-CSSHHHHH----HHHHTTCTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-C-CcHHHHHH----HHhhcchhHHHHHHHHHH
Confidence 456778888887 33 345666677778889999999999999988 3 44444432 222111111 11122211
Q ss_pred C---------CC---cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhh-cCchhhHHHHHHHHH
Q 037592 145 P---------VR---NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSH-MGLIDRGRKHFASMT 211 (337)
Q Consensus 145 ~---------~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~ 211 (337)
. .+ ....|...+....+.++.+.|..+|+++ +. ...+...|...+..-.. .++.+.|..+|+..+
T Consensus 270 ~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al 347 (493)
T 2uy1_A 270 SMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGL 347 (493)
T ss_dssp C----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred HhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 1 01 1245666677766778899999999988 32 22233344322222222 336889999999987
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhcCCCchhHHHHHHHHHhcCCChhHHHHHHHHHHh
Q 037592 212 KEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME 280 (337)
Q Consensus 212 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 280 (337)
+.. +.++..+...++.....|+.+.|..+|+... .....|...+..-...|+.+.+.++++++.+
T Consensus 348 ~~~--~~~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 348 LKH--PDSTLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 754 3335556667777788899999999999873 2466788888777788999999888888875
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.63 E-value=2.8e-07 Score=67.23 Aligned_cols=24 Identities=13% Similarity=0.070 Sum_probs=11.5
Q ss_pred HHHHHHHHhhcCchhhHHHHHHHH
Q 037592 187 FIGVLSACSHMGLIDRGRKHFASM 210 (337)
Q Consensus 187 ~~~l~~~~~~~~~~~~a~~~~~~~ 210 (337)
+..+...+...|++++|.+.+++.
T Consensus 132 ~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 132 CWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHH
Confidence 333444444555555555555444
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.62 E-value=1.3e-06 Score=61.21 Aligned_cols=88 Identities=11% Similarity=0.043 Sum_probs=43.0
Q ss_pred HHHHHHhCCCHhHHHHHHHHHHhcCCCCCH---hHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCC---HHHHHHHHH
Q 037592 155 MISGFAQNGRGEEALRIFDDMTEGGTKPDH---VSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPK---IEHYNCMVD 228 (337)
Q Consensus 155 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~ 228 (337)
+...+...|++++|...|+++.+.... +. ..+..+..++...|++++|...++.++... +.+ ...+..+..
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHHH
Confidence 444455555555555555555543211 11 234444455555555555555555554331 112 344455555
Q ss_pred HHHhcCChHHHHHHHHH
Q 037592 229 LLGRAGLLEEAETLIEN 245 (337)
Q Consensus 229 ~~~~~g~~~~A~~~~~~ 245 (337)
++...|++++|...|++
T Consensus 85 ~~~~~g~~~~A~~~~~~ 101 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQ 101 (129)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHH
Confidence 55555555555555554
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.60 E-value=5.2e-07 Score=65.72 Aligned_cols=94 Identities=16% Similarity=0.093 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHh-------cCCC-chhHHHHHHHHHhcCCChhHHHHHHHHHHhcC------CCccc
Q 037592 222 HYNCMVDLLGRAGLLEEAETLIENA-------DCRH-DSSLWEVLLGACTTFRNAHVAERVAKKIMELK------PDCHL 287 (337)
Q Consensus 222 ~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------p~~~~ 287 (337)
++..+...+...|++++|.+.+++. +..+ ....+..+...+...|++++|...++++.+.. +....
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 4445555555566666666555542 0000 12344555566677777777777777766521 11134
Q ss_pred hHHHHHHHHHHcCChhhHHHHHHHHHHh
Q 037592 288 SYVLLDNVYRAVGRWNDAFKIRTLMKYS 315 (337)
Q Consensus 288 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 315 (337)
++..++.++...|++++|...+++..+.
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5677777888888888888888776653
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.60 E-value=9e-08 Score=66.19 Aligned_cols=89 Identities=15% Similarity=0.089 Sum_probs=48.0
Q ss_pred cCchhhHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cCCC-chhHHHHHHHHHhcCCChhHHH
Q 037592 197 MGLIDRGRKHFASMTKEYR--IKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DCRH-DSSLWEVLLGACTTFRNAHVAE 272 (337)
Q Consensus 197 ~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~ 272 (337)
.|++++|+..|+++++. + -+.+...+..+..+|...|++++|...|++. ...| +...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 46666666666666532 1 1223455566666666666666666666653 2222 3444555556666666666666
Q ss_pred HHHHHHHhcCCCcc
Q 037592 273 RVAKKIMELKPDCH 286 (337)
Q Consensus 273 ~~~~~~~~~~p~~~ 286 (337)
..++++++..|+++
T Consensus 82 ~~~~~al~~~p~~~ 95 (117)
T 3k9i_A 82 ELLLKIIAETSDDE 95 (117)
T ss_dssp HHHHHHHHHHCCCH
T ss_pred HHHHHHHHhCCCcH
Confidence 66666666666543
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.60 E-value=3.6e-07 Score=64.03 Aligned_cols=98 Identities=9% Similarity=0.024 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHh-c-CCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCc-------cchHH
Q 037592 220 IEHYNCMVDLLGRAGLLEEAETLIENA-D-CRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDC-------HLSYV 290 (337)
Q Consensus 220 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~ 290 (337)
...+..++..+...|++++|...|++. . .+.+...+..+...+...|++++|...++++.+..|++ ..++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 456778889999999999999999974 2 33466778888899999999999999999999987765 77899
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHHhCC
Q 037592 291 LLDNVYRAVGRWNDAFKIRTLMKYSGV 317 (337)
Q Consensus 291 ~l~~~~~~~g~~~~A~~~~~~m~~~~~ 317 (337)
.++.++...|++++|...|++..+...
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~ 110 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR 110 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 999999999999999999999988643
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.59 E-value=2.7e-07 Score=76.62 Aligned_cols=150 Identities=9% Similarity=-0.081 Sum_probs=80.1
Q ss_pred HHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 037592 149 LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVD 228 (337)
Q Consensus 149 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 228 (337)
...+..+...+.+.|++++|+..|++.... .|+... +...++.+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 345667777778888888888888887763 344331 223333433332211 137788889
Q ss_pred HHHhcCChHHHHHHHHHh-cCC-CchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHH-HHHcCChhhH
Q 037592 229 LLGRAGLLEEAETLIENA-DCR-HDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNV-YRAVGRWNDA 305 (337)
Q Consensus 229 ~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~-~~~~g~~~~A 305 (337)
+|.+.|++++|+..+++. ... .+...|..+..+|...|++++|+..|++++++.|++..++..+..+ ....+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999874 333 3567788888999999999999999999999999988888887776 3445677888
Q ss_pred HHHHHHHHHhCCc
Q 037592 306 FKIRTLMKYSGVK 318 (337)
Q Consensus 306 ~~~~~~m~~~~~~ 318 (337)
...|.+|......
T Consensus 319 ~~~~~~~l~~~p~ 331 (338)
T 2if4_A 319 KEMYKGIFKGKDE 331 (338)
T ss_dssp -------------
T ss_pred HHHHHHhhCCCCC
Confidence 8888888765443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.59 E-value=4.5e-07 Score=66.57 Aligned_cols=102 Identities=13% Similarity=-0.007 Sum_probs=67.9
Q ss_pred hHHHHHHHHHhhcCchhhHHHHHHHHHHhcC----------------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-c
Q 037592 185 VSFIGVLSACSHMGLIDRGRKHFASMTKEYR----------------IKPKIEHYNCMVDLLGRAGLLEEAETLIENA-D 247 (337)
Q Consensus 185 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 247 (337)
..+......+.+.|++++|+..|..++.... .+.+...|..+..+|.+.|++++|+..+++. .
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 4556666777788888888888888765300 1222356666777777777777777777653 2
Q ss_pred CC-CchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCcc
Q 037592 248 CR-HDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCH 286 (337)
Q Consensus 248 ~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 286 (337)
.. .+...|..+..++...|++++|...|+++++++|+++
T Consensus 92 ~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 92 REETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 22 3455666666777777777777777777777777765
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.58 E-value=6.4e-07 Score=62.23 Aligned_cols=97 Identities=11% Similarity=0.010 Sum_probs=60.2
Q ss_pred HHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cCCC-chhHHHHHHHHHhc
Q 037592 187 FIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DCRH-DSSLWEVLLGACTT 264 (337)
Q Consensus 187 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~ 264 (337)
+..+...+.+.|++++|...++.+++.. +.+...|..+..++...|++++|+..|++. ...| +...+..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3344555666777777777777776542 345666667777777777777777777653 2333 44556666677777
Q ss_pred CCChhHHHHHHHHHHhcCCCc
Q 037592 265 FRNAHVAERVAKKIMELKPDC 285 (337)
Q Consensus 265 ~g~~~~a~~~~~~~~~~~p~~ 285 (337)
.|++++|+..++++++..|++
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHHC-----
T ss_pred cCCHHHHHHHHHHHHHhCcCC
Confidence 777777777777777777764
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.58 E-value=7.6e-07 Score=74.84 Aligned_cols=90 Identities=12% Similarity=-0.043 Sum_probs=76.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHh-cCCC-chhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHH
Q 037592 219 KIEHYNCMVDLLGRAGLLEEAETLIENA-DCRH-DSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296 (337)
Q Consensus 219 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 296 (337)
+..+|..+..+|.+.|++++|++.+++. ...| +...+..+..+|...|++++|+..|++++++.|++...+..+..++
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4578888999999999999999999874 4444 5667888889999999999999999999999999888999999998
Q ss_pred HHcCChhhHHHH
Q 037592 297 RAVGRWNDAFKI 308 (337)
Q Consensus 297 ~~~g~~~~A~~~ 308 (337)
...++.+++.+.
T Consensus 352 ~~~~~~~~a~k~ 363 (370)
T 1ihg_A 352 QKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 888887777653
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.57 E-value=1.8e-07 Score=81.49 Aligned_cols=119 Identities=9% Similarity=-0.028 Sum_probs=92.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHcc--cC-ChhhHHHHHHHHHcCCChhHHHHHHHHHhh--c-CcccHHHHHHHHHhh
Q 037592 23 VESSLVDMYGKCGLVDESHRVFDKML--KK-NSVSSSALLQGYCQTGDFESVIRIFREMEE--I-DLFSFGIVLRACAGL 96 (337)
Q Consensus 23 ~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~ 96 (337)
.+..+...+.+.|++++|++.|++.+ .| +...|..+..+|.+.|++++|++.+++..+ | +..++..+..++...
T Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~ 87 (477)
T 1wao_1 8 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL 87 (477)
T ss_dssp TSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 34555666778899999999999883 33 577889999999999999999999999988 3 345788888899999
Q ss_pred chhhhhHHHHHHHHHhhCCCCchhHHHHHHH--HHhcCCHHHHHHHHh
Q 037592 97 AALRLGKEVHCQYIRRSGCKDVIIESALVDL--YAKCGCVDFAHQIFL 142 (337)
Q Consensus 97 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 142 (337)
|++++|...++++++..+ .+...+..+..+ +.+.|++++|++.++
T Consensus 88 g~~~eA~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 88 GKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp TCHHHHHHHHHHHHHHST-TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999998865 445566666666 888899999999988
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.55 E-value=9.1e-07 Score=64.92 Aligned_cols=102 Identities=10% Similarity=0.010 Sum_probs=71.3
Q ss_pred HHhHHHHHHHHHhCCCHhHHHHHHHHHHhc--------CC--------CC-CHhHHHHHHHHHhhcCchhhHHHHHHHHH
Q 037592 149 LITWNSMISGFAQNGRGEEALRIFDDMTEG--------GT--------KP-DHVSFIGVLSACSHMGLIDRGRKHFASMT 211 (337)
Q Consensus 149 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--------~~--------~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 211 (337)
...+......+.+.|++++|+..|.+.... .. .| +...+..+..++.+.|++++|+..++.++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345667777888888888888888887663 00 11 22456667777778888888888888886
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cCCCch
Q 037592 212 KEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DCRHDS 252 (337)
Q Consensus 212 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~ 252 (337)
+.. +.+...|..+..+|...|++++|...|++. ...|+.
T Consensus 91 ~~~--p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~ 130 (162)
T 3rkv_A 91 KRE--ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAA 130 (162)
T ss_dssp HHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG
T ss_pred hcC--CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCC
Confidence 542 445777788888888888888888888763 444543
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.50 E-value=7.5e-07 Score=77.22 Aligned_cols=132 Identities=10% Similarity=-0.045 Sum_probs=72.5
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHHHHHhh--cCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 037592 52 SVSSSALLQGYCQTGDFESVIRIFREMEE--IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYA 129 (337)
Q Consensus 52 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 129 (337)
...|..+...+.+.|++++|+..|++..+ |+...+. . +... +.. .....+|..+..+|.
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~---------~--~~~~----~~~----~~~~~~~~nla~~~~ 328 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLS---------E--KESK----ASE----SFLLAAFLNLAMCYL 328 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCC---------H--HHHH----HHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCC---------h--HHHH----HHH----HHHHHHHHHHHHHHH
Confidence 34456666666677777777777766665 3321000 0 0000 000 001345566666666
Q ss_pred hcCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCC-CHhHHHHHHHHHhhcCchhhHH
Q 037592 130 KCGCVDFAHQIFLQMP---VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKP-DHVSFIGVLSACSHMGLIDRGR 204 (337)
Q Consensus 130 ~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~ 204 (337)
+.|++++|+..+++.. +.+..+|..+..+|...|++++|+..|+++.+. .| +...+..+..++.+.++.+++.
T Consensus 329 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 329 KLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777766666655 334556666667777777777777777776663 23 3345555556666666666554
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.49 E-value=5.1e-07 Score=62.30 Aligned_cols=81 Identities=15% Similarity=0.190 Sum_probs=35.2
Q ss_pred CCHhHHHHHHHHHHhcCC-CC-CHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 037592 163 GRGEEALRIFDDMTEGGT-KP-DHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240 (337)
Q Consensus 163 ~~~~~a~~~~~~m~~~~~-~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 240 (337)
|++++|+..|++..+.+. .| +...+..+..++...|++++|...++++++.. +.+..++..+..++...|++++|.
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF--PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHcCCHHHHH
Confidence 445555555555544320 01 22334444444445555555555555554321 223444444555555555555555
Q ss_pred HHHHH
Q 037592 241 TLIEN 245 (337)
Q Consensus 241 ~~~~~ 245 (337)
..+++
T Consensus 82 ~~~~~ 86 (117)
T 3k9i_A 82 ELLLK 86 (117)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.49 E-value=9.9e-07 Score=76.59 Aligned_cols=125 Identities=9% Similarity=-0.036 Sum_probs=99.5
Q ss_pred HHhhcCchhhHHHHHHHHHHhcC--CCC----CHHHHHHHHHHHHhcCChHHHHHHHHHh--------c-CCCc-hhHHH
Q 037592 193 ACSHMGLIDRGRKHFASMTKEYR--IKP----KIEHYNCMVDLLGRAGLLEEAETLIENA--------D-CRHD-SSLWE 256 (337)
Q Consensus 193 ~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~-~~~~-~~~~~ 256 (337)
.+...|++++|..++++.++... +.+ ...+++.|+.+|...|++++|+.++++. | ..|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 35578999999999988875432 122 2577899999999999999999998863 2 3343 45688
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHh-----cCCCccc---hHHHHHHHHHHcCChhhHHHHHHHHHHhCC
Q 037592 257 VLLGACTTFRNAHVAERVAKKIME-----LKPDCHL---SYVLLDNVYRAVGRWNDAFKIRTLMKYSGV 317 (337)
Q Consensus 257 ~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 317 (337)
.|...|...|++++|+.+++++++ +.|+++. ....+..++.+.+++++|..+|.++++.-.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~ 466 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAAL 466 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888999999999999999999986 5677544 456788889999999999999999987543
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.48 E-value=5.8e-07 Score=74.67 Aligned_cols=140 Identities=10% Similarity=-0.056 Sum_probs=63.5
Q ss_pred hhHHHHHHHHHcCCChhHHHHHHHHHhh--cCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHh
Q 037592 53 VSSSALLQGYCQTGDFESVIRIFREMEE--IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAK 130 (337)
Q Consensus 53 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 130 (337)
..+..+...+.+.|++++|+..|++... |+.. .+...++.+++...+ ...+|..+..+|.+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-------~~~~~~~~~~~~~~l----------~~~~~~nla~~~~~ 242 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-------MFQLYGKYQDMALAV----------KNPCHLNIAACLIK 242 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-------HHTCCHHHHHHHHHH----------HTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-------hhhhcccHHHHHHHH----------HHHHHHHHHHHHHH
Confidence 3466677778888888888888888776 3321 111222222222111 01245566666666
Q ss_pred cCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCH-hHHHHHHHH-HhhcCchhhHHH
Q 037592 131 CGCVDFAHQIFLQMP---VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDH-VSFIGVLSA-CSHMGLIDRGRK 205 (337)
Q Consensus 131 ~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~-~~~~~~~~~a~~ 205 (337)
.|++++|+..+++.. +.+...|..+..+|...|++++|...|++..+. .|+. ..+..+... ....+..+.+..
T Consensus 243 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 243 LKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp TTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666654 234556666666666667777777666666553 3322 222323222 123445556666
Q ss_pred HHHHHH
Q 037592 206 HFASMT 211 (337)
Q Consensus 206 ~~~~~~ 211 (337)
.|..++
T Consensus 321 ~~~~~l 326 (338)
T 2if4_A 321 MYKGIF 326 (338)
T ss_dssp ------
T ss_pred HHHHhh
Confidence 666664
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=1.5e-05 Score=70.74 Aligned_cols=167 Identities=8% Similarity=-0.009 Sum_probs=105.8
Q ss_pred HHHHHHHhcCC---CCcHHhHHHHHHHHHhCCC----------HhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcC--c
Q 037592 135 DFAHQIFLQMP---VRNLITWNSMISGFAQNGR----------GEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMG--L 199 (337)
Q Consensus 135 ~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~--~ 199 (337)
++|++.++++. +.+..+|+.--.++...|+ +++++..++++.+...+ +..+|..-.-.+.+.+ +
T Consensus 46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~~~ 124 (567)
T 1dce_A 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPN 124 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSCC
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccccc
Confidence 34455555444 2233444444444444444 66777777777665333 4455555555555666 5
Q ss_pred hhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHh-cCCC-chhHHHHHHHHHhc------------
Q 037592 200 IDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG-LLEEAETLIENA-DCRH-DSSLWEVLLGACTT------------ 264 (337)
Q Consensus 200 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~------------ 264 (337)
++++++.++.+++.. +-+..+|+.-..++.+.| .++++.+.++++ ...| +...|+.....+..
T Consensus 125 ~~~el~~~~k~l~~d--~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~ 202 (567)
T 1dce_A 125 WARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGR 202 (567)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred HHHHHHHHHHHHhhc--cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccccc
Confidence 577777777776543 445666666666666666 677777777653 3222 45556555544333
Q ss_pred --CCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhh
Q 037592 265 --FRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWND 304 (337)
Q Consensus 265 --~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 304 (337)
.+.++++++.+.+++..+|++..+|..+...+.+.++.++
T Consensus 203 ~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 203 LPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 2567999999999999999999999999999998888555
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.41 E-value=2.7e-07 Score=62.80 Aligned_cols=93 Identities=13% Similarity=0.009 Sum_probs=72.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHh-cC-CCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCc------cchHH
Q 037592 219 KIEHYNCMVDLLGRAGLLEEAETLIENA-DC-RHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDC------HLSYV 290 (337)
Q Consensus 219 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 290 (337)
+...+..+...+...|++++|.+.|++. .. +.+...+..+..++...|++++|+..+++++++.|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4556777888888888999998888863 22 3356677788888999999999999999999999987 66777
Q ss_pred HHHHHHHHcCChhhHHHHHHH
Q 037592 291 LLDNVYRAVGRWNDAFKIRTL 311 (337)
Q Consensus 291 ~l~~~~~~~g~~~~A~~~~~~ 311 (337)
.+..++...|+.++|...+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 788888888877777665543
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.40 E-value=2.3e-06 Score=71.94 Aligned_cols=117 Identities=10% Similarity=0.009 Sum_probs=76.7
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHccc----------------C---ChhhHHHHHHHHHcCCChhHHHHHHHHHhh--
Q 037592 22 VVESSLVDMYGKCGLVDESHRVFDKMLK----------------K---NSVSSSALLQGYCQTGDFESVIRIFREMEE-- 80 (337)
Q Consensus 22 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~----------------~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 80 (337)
..+..+...+.+.|++++|+..|++.+. . +...|..+..+|.+.|++++|++.++++.+
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 3466777888888888888888887754 1 244566666777777777777777777766
Q ss_pred c-CcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHH
Q 037592 81 I-DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQ 139 (337)
Q Consensus 81 ~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 139 (337)
| +..++..+..++...|++++|...++++++..+ .+..++..+..++...++.+++.+
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P-~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 234566666666777777777777777666643 345555556666666666555543
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.32 E-value=3.4e-06 Score=56.24 Aligned_cols=64 Identities=22% Similarity=0.189 Sum_probs=41.0
Q ss_pred chhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHH
Q 037592 251 DSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKY 314 (337)
Q Consensus 251 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 314 (337)
+...+..+..++...|++++|+..|+++++.+|+++.+|..++.+|...|++++|...|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3445555566666666666666666666666666666666666666666666666666666554
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.28 E-value=6.3e-06 Score=59.32 Aligned_cols=58 Identities=22% Similarity=0.207 Sum_probs=35.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhcCC---------CC-cHHhH----HHHHHHHHhCCCHhHHHHHHHHHHh
Q 037592 120 IESALVDLYAKCGCVDFAHQIFLQMP---------VR-NLITW----NSMISGFAQNGRGEEALRIFDDMTE 177 (337)
Q Consensus 120 ~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~-~~~~~----~~l~~~~~~~~~~~~a~~~~~~m~~ 177 (337)
.|..+..++.+.|++++|+..+++.. .| +...| .....++...|++++|+..|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 45555555555555555555544433 22 33456 6777777777777777777777765
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.27 E-value=9.6e-06 Score=52.62 Aligned_cols=81 Identities=20% Similarity=0.188 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHh-cC-CCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHH
Q 037592 220 IEHYNCMVDLLGRAGLLEEAETLIENA-DC-RHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297 (337)
Q Consensus 220 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 297 (337)
...+..+...+...|++++|...+++. .. +.+...+..+..++...|++++|...++++.+..|+++..+..+..++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 456667777777788888888887763 22 2345567777778888888888888888888888887778877777776
Q ss_pred HcC
Q 037592 298 AVG 300 (337)
Q Consensus 298 ~~g 300 (337)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 543
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.26 E-value=2.5e-06 Score=61.32 Aligned_cols=96 Identities=9% Similarity=0.035 Sum_probs=62.2
Q ss_pred hcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhcCCCchhHHHHHHHHHhcCCChhHHHHHH
Q 037592 196 HMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVA 275 (337)
Q Consensus 196 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 275 (337)
+.+.+++|.+.++..++.. +.+...|..+..++...++++.+...++ .+++|+..|
T Consensus 14 r~~~feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al~----------------------~~~eAi~~l 69 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQ----------------------MIQEAITKF 69 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHH----------------------HHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhHh----------------------HHHHHHHHH
Confidence 4566777888888776543 4466777777777777666553333221 256677777
Q ss_pred HHHHhcCCCccchHHHHHHHHHHcC-----------ChhhHHHHHHHHHHh
Q 037592 276 KKIMELKPDCHLSYVLLDNVYRAVG-----------RWNDAFKIRTLMKYS 315 (337)
Q Consensus 276 ~~~~~~~p~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~m~~~ 315 (337)
+++++++|+...+|..++.+|...| ++++|++.|++..+.
T Consensus 70 e~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 70 EEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 7777777776667777777776653 677777777766654
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.22 E-value=3.6e-06 Score=73.05 Aligned_cols=95 Identities=8% Similarity=-0.063 Sum_probs=56.6
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHhcCC----------CCc-HHhHHHHHHHHHhCCCHhHHHHHHHHHHhc-----CCC
Q 037592 118 VIIESALVDLYAKCGCVDFAHQIFLQMP----------VRN-LITWNSMISGFAQNGRGEEALRIFDDMTEG-----GTK 181 (337)
Q Consensus 118 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----~~~ 181 (337)
..+++.|..+|...|++++|+.++++.. .|+ ..+++.|...|...|++++|..++++..+. |..
T Consensus 351 a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~ 430 (490)
T 3n71_A 351 LRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPS 430 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 3455666666666666666666665544 122 245667777777777777777777765431 221
Q ss_pred -CC-HhHHHHHHHHHhhcCchhhHHHHHHHHHH
Q 037592 182 -PD-HVSFIGVLSACSHMGLIDRGRKHFASMTK 212 (337)
Q Consensus 182 -p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 212 (337)
|+ ..+...+..++...+.+++|+.++.++.+
T Consensus 431 Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 431 HPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 12334444566677777777777777744
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=8.9e-05 Score=65.88 Aligned_cols=167 Identities=13% Similarity=0.016 Sum_probs=106.3
Q ss_pred hhHHHHHHHHHhh--cCcc-cHHHHHHHHHhhch----------hhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcC--
Q 037592 68 FESVIRIFREMEE--IDLF-SFGIVLRACAGLAA----------LRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCG-- 132 (337)
Q Consensus 68 ~~~A~~~~~~~~~--~~~~-~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-- 132 (337)
.++|++.++++.. |+.. +|+.-..++...++ ++++...++++++..+ .+..+|+.-.-++.+.|
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p-K~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCSSC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcccc
Confidence 3456666666666 3322 34444444444444 6677777777776654 55666666666666666
Q ss_pred CHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCC-CHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhc-----------
Q 037592 133 CVDFAHQIFLQMP---VRNLITWNSMISGFAQNG-RGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHM----------- 197 (337)
Q Consensus 133 ~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~----------- 197 (337)
+++++++.++++. +.+..+|+.....+...| .++++++.++++.+..+. +..+|+.....+.+.
T Consensus 124 ~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~~~ 202 (567)
T 1dce_A 124 NWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGR 202 (567)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred cHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccccccccc
Confidence 5577777777766 345566666666666666 677777777777665332 555555554444432
Q ss_pred ---CchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHH
Q 037592 198 ---GLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238 (337)
Q Consensus 198 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 238 (337)
+.++++.+.++.++... +-+...|+.+...+.+.++.++
T Consensus 203 ~~~~~~~eel~~~~~ai~~~--P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 203 LPENVLLKELELVQNAFFTD--PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCHHHHHHHHHHHHHHHHHC--SSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccHHHHHHHHHHHHHHHhhC--CCCccHHHHHHHHHhcCCCccc
Confidence 55788999998887653 5567888888888887777444
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.21 E-value=7.5e-06 Score=56.04 Aligned_cols=81 Identities=10% Similarity=-0.004 Sum_probs=52.9
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cC-CCchhHHHHHHHHHhcCCChhHHHHHHHHHH
Q 037592 202 RGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DC-RHDSSLWEVLLGACTTFRNAHVAERVAKKIM 279 (337)
Q Consensus 202 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 279 (337)
.|...++.+++. .+.+...+..+...|...|++++|...|++. .. +.+...|..+..++...|++++|...|+++.
T Consensus 3 ~a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 466667766542 2345667777777777777777777777763 22 2244566666677777777777777777777
Q ss_pred hcCCC
Q 037592 280 ELKPD 284 (337)
Q Consensus 280 ~~~p~ 284 (337)
+..|.
T Consensus 81 ~~~~~ 85 (115)
T 2kat_A 81 AAAQS 85 (115)
T ss_dssp HHHHH
T ss_pred Hhccc
Confidence 76554
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.15 E-value=3.2e-05 Score=52.81 Aligned_cols=77 Identities=16% Similarity=0.114 Sum_probs=62.2
Q ss_pred hhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHcc--cC-ChhhHHHHHHHHHcCCChhHHHHHHHHHh
Q 037592 3 KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKML--KK-NSVSSSALLQGYCQTGDFESVIRIFREME 79 (337)
Q Consensus 3 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 79 (337)
+.|+..|+..++.. +.+...+..+...|...|++++|+..|++.+ .| +...|..+..++...|++++|...|++..
T Consensus 2 ~~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 2 QAITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CCHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 56788888888764 4467788888889999999999999998873 23 56678888888999999999999998876
Q ss_pred h
Q 037592 80 E 80 (337)
Q Consensus 80 ~ 80 (337)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 6
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.10 E-value=7e-05 Score=53.10 Aligned_cols=108 Identities=10% Similarity=-0.061 Sum_probs=49.0
Q ss_pred CHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCChHHH
Q 037592 164 RGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGR----AGLLEEA 239 (337)
Q Consensus 164 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A 239 (337)
++++|+..|++..+.|. |... +...|...+..++|.+.|++..+. -++..+..|...|.. .+++++|
T Consensus 10 d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 10 DLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHHH
Confidence 45555555555555442 1211 334444444455555555555321 234444445555544 4455555
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHhc----CCChhHHHHHHHHHHh
Q 037592 240 ETLIENADCRHDSSLWEVLLGACTT----FRNAHVAERVAKKIME 280 (337)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~ 280 (337)
.+.|++.-...++..+..+...|.. .+++++|..+|+++.+
T Consensus 81 ~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 81 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence 5555443222233334444444443 4444444444444444
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.09 E-value=1.8e-05 Score=53.49 Aligned_cols=67 Identities=7% Similarity=-0.038 Sum_probs=61.3
Q ss_pred chhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCC
Q 037592 251 DSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGV 317 (337)
Q Consensus 251 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 317 (337)
+...+..+...+...|++++|+..|+++++..|+++..+..++.++...|++++|+..+++..+...
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 69 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS 69 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 5567788888999999999999999999999999999999999999999999999999999887543
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.08 E-value=2.6e-05 Score=50.98 Aligned_cols=69 Identities=12% Similarity=0.069 Sum_probs=56.1
Q ss_pred CchhHHHHHHHHHhcCCC---hhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCCc
Q 037592 250 HDSSLWEVLLGACTTFRN---AHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVK 318 (337)
Q Consensus 250 ~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 318 (337)
+++..+..+..++...++ .++|..+++++++.+|+++.+...++..+.+.|++++|+..|+++.+....
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 455666667766543333 789999999999999999999999999999999999999999999886554
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.07 E-value=4.5e-05 Score=54.12 Aligned_cols=108 Identities=11% Similarity=-0.061 Sum_probs=74.4
Q ss_pred chhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHcccC-ChhhHHHHHHHHHc----CCChhHHHHHHH
Q 037592 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKK-NSVSSSALLQGYCQ----TGDFESVIRIFR 76 (337)
Q Consensus 2 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~g~~~~A~~~~~ 76 (337)
+++|.+.|+...+.| .|+.. |...|...+.+++|++.|++..+. +...+..|...|.. .+++++|+++|+
T Consensus 11 ~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~ 85 (138)
T 1klx_A 11 LKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYS 85 (138)
T ss_dssp HHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHH
Confidence 467777777777776 22222 666666667777788877776443 56677777777776 677778888877
Q ss_pred HHhh-cCcccHHHHHHHHHh----hchhhhhHHHHHHHHHhhC
Q 037592 77 EMEE-IDLFSFGIVLRACAG----LAALRLGKEVHCQYIRRSG 114 (337)
Q Consensus 77 ~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~ 114 (337)
+..+ -+...+..+...|.. .+++++|...|++..+.|.
T Consensus 86 ~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 86 KACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 7766 555566666666666 6777777777777776654
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.00 E-value=1.4e-05 Score=57.46 Aligned_cols=94 Identities=9% Similarity=0.014 Sum_probs=48.7
Q ss_pred hhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCH----------HHHHHHHhcCC--C-CcHHhHHHHHHHHHh
Q 037592 95 GLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCV----------DFAHQIFLQMP--V-RNLITWNSMISGFAQ 161 (337)
Q Consensus 95 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~--~-~~~~~~~~l~~~~~~ 161 (337)
+.+.+++|...+++.++..+ .+...|+.+..++...+++ ++|+..|++.. . .+..+|..+..+|..
T Consensus 14 r~~~feeA~~~~~~Ai~l~P-~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNP-LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 34445555555555555543 4455555555555554443 34444444443 1 233444445555444
Q ss_pred C-----------CCHhHHHHHHHHHHhcCCCCCHhHHHHHH
Q 037592 162 N-----------GRGEEALRIFDDMTEGGTKPDHVSFIGVL 191 (337)
Q Consensus 162 ~-----------~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 191 (337)
. |++++|+..|++.++ +.|+...|...+
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al 131 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSL 131 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 3 467777777777776 455555444333
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.97 E-value=5.8e-05 Score=50.09 Aligned_cols=64 Identities=11% Similarity=0.176 Sum_probs=37.6
Q ss_pred cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHH
Q 037592 148 NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTK 212 (337)
Q Consensus 148 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 212 (337)
+...+..+..+|...|++++|+..|++..+.... +...|..+..++...|++++|...+++.++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3455566666666666666666666666654322 334555555666666666666666666543
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.96 E-value=5.7e-05 Score=48.79 Aligned_cols=74 Identities=12% Similarity=0.069 Sum_probs=31.4
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHhh--c-CcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 037592 55 SSALLQGYCQTGDFESVIRIFREMEE--I-DLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYA 129 (337)
Q Consensus 55 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 129 (337)
+..+...+...|++++|+..|++..+ | +...+..+..++...|++++|...+++.++..+ .+...+..+..++.
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHH
Confidence 33444444444444444444444443 1 122333444444444444444444444444432 23344444444433
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.79 E-value=4.5e-05 Score=50.37 Aligned_cols=64 Identities=17% Similarity=0.152 Sum_probs=41.7
Q ss_pred HHHHHHhcCChHHHHHHHHHh-cCCC-chh-HHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchH
Q 037592 226 MVDLLGRAGLLEEAETLIENA-DCRH-DSS-LWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSY 289 (337)
Q Consensus 226 l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 289 (337)
.+..+...|++++|...|++. ...| +.. .+..+..++...|++++|+..|+++++.+|++..++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 345566667777777777653 2223 334 566666677777777777777777777777766554
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00023 Score=60.73 Aligned_cols=91 Identities=11% Similarity=0.004 Sum_probs=56.2
Q ss_pred cCchhhHHHHHHHHHHhcC--CCCC----HHHHHHHHHHHHhcCChHHHHHHHHHh--------c-CCCc-hhHHHHHHH
Q 037592 197 MGLIDRGRKHFASMTKEYR--IKPK----IEHYNCMVDLLGRAGLLEEAETLIENA--------D-CRHD-SSLWEVLLG 260 (337)
Q Consensus 197 ~~~~~~a~~~~~~~~~~~~--~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~-~~~~-~~~~~~l~~ 260 (337)
.|++++|..++++.+.... +.|+ ..+++.|+.+|...|++++|+.++++. | ..|+ ..+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 4667777777776654321 1222 356677777777777777777777652 2 2333 345666677
Q ss_pred HHhcCCChhHHHHHHHHHHh-----cCCCccc
Q 037592 261 ACTTFRNAHVAERVAKKIME-----LKPDCHL 287 (337)
Q Consensus 261 ~~~~~g~~~~a~~~~~~~~~-----~~p~~~~ 287 (337)
.|...|++++|+.+++++++ +.|+++.
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~ 422 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPY 422 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHcCCCChH
Confidence 77777777777777777765 4566443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=8.6e-05 Score=63.39 Aligned_cols=83 Identities=12% Similarity=0.056 Sum_probs=67.9
Q ss_pred hcCChHHHHHHHHHh--------c-CCCc-hhHHHHHHHHHhcCCChhHHHHHHHHHHh-----cCCCc---cchHHHHH
Q 037592 232 RAGLLEEAETLIENA--------D-CRHD-SSLWEVLLGACTTFRNAHVAERVAKKIME-----LKPDC---HLSYVLLD 293 (337)
Q Consensus 232 ~~g~~~~A~~~~~~~--------~-~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~---~~~~~~l~ 293 (337)
..|++++|+.++++. + ..|+ ..+++.+..+|...|++++|+.+++++++ ..|++ ..+++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457899999998762 2 2333 35788899999999999999999999986 44444 45799999
Q ss_pred HHHHHcCChhhHHHHHHHHHH
Q 037592 294 NVYRAVGRWNDAFKIRTLMKY 314 (337)
Q Consensus 294 ~~~~~~g~~~~A~~~~~~m~~ 314 (337)
..|...|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999998765
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00016 Score=47.57 Aligned_cols=61 Identities=16% Similarity=0.254 Sum_probs=55.0
Q ss_pred HHHHHhcCCChhHHHHHHHHHHhcCCCccc-hHHHHHHHHHHcCChhhHHHHHHHHHHhCCc
Q 037592 258 LLGACTTFRNAHVAERVAKKIMELKPDCHL-SYVLLDNVYRAVGRWNDAFKIRTLMKYSGVK 318 (337)
Q Consensus 258 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 318 (337)
....+...|++++|+..++++.+..|+++. .+..++.+|...|++++|...|++..+....
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 67 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD 67 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 345678899999999999999999999988 9999999999999999999999999886543
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00023 Score=60.85 Aligned_cols=60 Identities=15% Similarity=-0.011 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHh--------c-CCCc-hhHHHHHHHHHhcCCChhHHHHHHHHHHh
Q 037592 221 EHYNCMVDLLGRAGLLEEAETLIENA--------D-CRHD-SSLWEVLLGACTTFRNAHVAERVAKKIME 280 (337)
Q Consensus 221 ~~~~~l~~~~~~~g~~~~A~~~~~~~--------~-~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 280 (337)
.+++.++.+|...|++++|+.++++. | ..|+ ..+++.|...|...|++++|+.+++++++
T Consensus 330 ~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 330 KVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34444555555555555555554431 1 1121 22344444445555555555555555555
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=0.0009 Score=57.19 Aligned_cols=88 Identities=13% Similarity=0.089 Sum_probs=61.9
Q ss_pred HHHHHhcCChHHHHHHHHHh--------c-CCC-chhHHHHHHHHHhcCCChhHHHHHHHHHHh-----cCCCc---cch
Q 037592 227 VDLLGRAGLLEEAETLIENA--------D-CRH-DSSLWEVLLGACTTFRNAHVAERVAKKIME-----LKPDC---HLS 288 (337)
Q Consensus 227 ~~~~~~~g~~~~A~~~~~~~--------~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~---~~~ 288 (337)
+..+.+.|++++|+.++++. + ..| ...+++.+..+|...|++++|+.+++++++ ..|++ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 33455677888888887753 1 112 234677777888888888888888888875 33443 446
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHH
Q 037592 289 YVLLDNVYRAVGRWNDAFKIRTLMKY 314 (337)
Q Consensus 289 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 314 (337)
++.|+..|...|++++|..++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 77888888888888888888887654
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.54 E-value=0.0073 Score=49.79 Aligned_cols=68 Identities=13% Similarity=-0.004 Sum_probs=41.8
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cCCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCC
Q 037592 217 KPKIEHYNCMVDLLGRAGLLEEAETLIENA-DCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPD 284 (337)
Q Consensus 217 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 284 (337)
+.++.++..+...+...|++++|...+++. ...|+...|..+...+.-.|++++|.+.++++..++|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~ 342 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG 342 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 445566666655555566777777666652 23355555555556666667777777777776666666
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=97.50 E-value=0.01 Score=40.77 Aligned_cols=141 Identities=13% Similarity=0.042 Sum_probs=103.1
Q ss_pred HHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHH
Q 037592 159 FAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238 (337)
Q Consensus 159 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 238 (337)
+.-.|..++..++..+.... .+..-++.++.-....-+-+-..++++.+ |--.| ...+|++..
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~I----GkiFD----------is~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKI----GSYFD----------LDKCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHH----GGGSC----------GGGCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHH----hhhcC----------cHhhhcHHH
Confidence 34567788888888777653 24455666665555555556666666665 32333 235677777
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCCc
Q 037592 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVK 318 (337)
Q Consensus 239 A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 318 (337)
....+-.++. +.......+......|+-++..+++..+..-.|.++.....+..+|.+.|+..+|.+++.+.-++|++
T Consensus 80 Vi~C~~~~n~--~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 80 VVECGVINNT--LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTTC--CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhcc--hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 7777777653 45557778888999999999999999976655544889999999999999999999999999999986
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.50 E-value=0.0097 Score=49.07 Aligned_cols=62 Identities=6% Similarity=0.080 Sum_probs=30.9
Q ss_pred cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHH
Q 037592 148 NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMT 211 (337)
Q Consensus 148 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 211 (337)
+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|...+++++
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Al 337 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAF 337 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 44444444444444455555555555555532 444444444444445555555555555554
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.019 Score=41.86 Aligned_cols=130 Identities=13% Similarity=0.047 Sum_probs=91.6
Q ss_pred HHHHHhcCChHHHHHHHHHcccCChhhHHHHHHHHHcCCChhHHHHHHHHHhhcCcccHHHHHHHHHhhchhhhhHHHHH
Q 037592 28 VDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHC 107 (337)
Q Consensus 28 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 107 (337)
.......|+++.|.++.+.+ .+...|..|.......|+++-|.++|.+... +..+.-.|.-.|+.++...+-+
T Consensus 12 F~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~~~L~~Ly~~tg~~e~L~kla~ 84 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS-----FDKLSFLYLVTGDVNKLSKMQN 84 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----HHHHHHHHHHhCCHHHHHHHHH
Confidence 45567899999999998876 4677899999999999999999999998754 5666666777777777666655
Q ss_pred HHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHH
Q 037592 108 QYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDM 175 (337)
Q Consensus 108 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 175 (337)
.....|- ++.....+.-.|+++++.++|.+......... .....|-.+.|.++.+++
T Consensus 85 iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~-----~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 85 IAQTRED------FGSMLLNTFYNNSTKERSSIFAEGGSLPLAYA-----VAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHH-----HHHHTTCHHHHHHHHHHT
T ss_pred HHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHCCChHHHHH-----HHHHcCcHHHHHHHHHHh
Confidence 5555443 45555667778888888888876654222111 112245666666666554
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0041 Score=57.87 Aligned_cols=98 Identities=14% Similarity=0.067 Sum_probs=47.8
Q ss_pred HhcCCHHHHHH-HHhcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHH
Q 037592 129 AKCGCVDFAHQ-IFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHF 207 (337)
Q Consensus 129 ~~~g~~~~A~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 207 (337)
...+++++|.+ ++..+. +......++..+.+.|.+++|+++.+.-. . -.......|+++.|.++.
T Consensus 610 ~~~~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~~~~~--------~----~f~~~l~~~~~~~A~~~~ 675 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNISPDQD--------Q----KFELALKVGQLTLARDLL 675 (814)
T ss_dssp HHTTCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHCCCHH--------H----HHHHHHHHTCHHHHHHHH
T ss_pred HHhCCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecCCCcc--------h----heehhhhcCCHHHHHHHH
Confidence 34566666655 443322 01122445555555666666555442110 0 012223456666665553
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhc
Q 037592 208 ASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENAD 247 (337)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 247 (337)
+.+ .+...|..+...+.+.|+++.|++.|.+++
T Consensus 676 ~~~-------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 676 TDE-------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp TTC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred Hhh-------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 222 344566666666666666666666666553
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.35 E-value=0.0082 Score=55.81 Aligned_cols=100 Identities=13% Similarity=0.073 Sum_probs=57.5
Q ss_pred HHHhcCChHHHHH-HHHHcccCChhhHHHHHHHHHcCCChhHHHHHHHHHhhcCcccHHHHHHHHHhhchhhhhHHHHHH
Q 037592 30 MYGKCGLVDESHR-VFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQ 108 (337)
Q Consensus 30 ~~~~~~~~~~A~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 108 (337)
.....+++++|.+ ++..+. +......++..+.+.|.++.|+++.+.- ..-.......|+++.|.++.+.
T Consensus 608 ~~~~~~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~~~~--------~~~f~~~l~~~~~~~A~~~~~~ 677 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNISPDQ--------DQKFELALKVGQLTLARDLLTD 677 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHCCCH--------HHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecCCCc--------chheehhhhcCCHHHHHHHHHh
Confidence 3345677777766 443322 0222366666667777777776655321 1123334556677777666432
Q ss_pred HHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC
Q 037592 109 YIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP 145 (337)
Q Consensus 109 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 145 (337)
+ .+...|..+...+.+.|+++.|.+.|.++.
T Consensus 678 ~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 678 E------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp C------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred h------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 1 455667777777777777777777666544
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0025 Score=42.37 Aligned_cols=75 Identities=20% Similarity=0.104 Sum_probs=54.1
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHh----c-----CCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccch
Q 037592 218 PKIEHYNCMVDLLGRAGLLEEAETLIENA----D-----CRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLS 288 (337)
Q Consensus 218 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~-----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 288 (337)
.+..-+..++..+.+.|+++.|...|+.. . ..+....+..+..++.+.|+++.|...++++.++.|++..+
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~ 82 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA 82 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 34455566777777777777777777652 0 12345667788888999999999999999999999997655
Q ss_pred HHHH
Q 037592 289 YVLL 292 (337)
Q Consensus 289 ~~~l 292 (337)
...+
T Consensus 83 ~~n~ 86 (104)
T 2v5f_A 83 NGNL 86 (104)
T ss_dssp HHHH
T ss_pred HhhH
Confidence 4433
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.022 Score=41.53 Aligned_cols=129 Identities=14% Similarity=0.114 Sum_probs=81.3
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHH
Q 037592 126 DLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRK 205 (337)
Q Consensus 126 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 205 (337)
......|+++.|.++.+++ .+...|..|.......|+++-|.+.|.+... +..+.-.|.-.|+.+.-.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 4456778888888887765 3567888888888888888888888877643 2334444555677766665
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhcCCCchhHHHHHHHHHhcCCChhHHHHHHHHH
Q 037592 206 HFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKI 278 (337)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 278 (337)
+-+....+ | -++.....+...|+++++.++|.+.+.-|.... .....|-.+.|.++..++
T Consensus 82 la~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~------~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYA------VAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHH------HHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHH------HHHHcCcHHHHHHHHHHh
Confidence 55554222 2 233444556677888888888887765443321 122255566666665544
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0032 Score=44.68 Aligned_cols=88 Identities=11% Similarity=0.014 Sum_probs=63.1
Q ss_pred chhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHh-cCC-C--chhHHHHHHHHHhcCCChhHH
Q 037592 199 LIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG---LLEEAETLIENA-DCR-H--DSSLWEVLLGACTTFRNAHVA 271 (337)
Q Consensus 199 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~-~--~~~~~~~l~~~~~~~g~~~~a 271 (337)
....+.+.|.+.... + +++..+...+.-++++.+ +.+++..+|++. ... | ....+..+.-+|.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHH
Confidence 344556666665443 2 467778888888888877 566888888864 222 4 244555666778999999999
Q ss_pred HHHHHHHHhcCCCccch
Q 037592 272 ERVAKKIMELKPDCHLS 288 (337)
Q Consensus 272 ~~~~~~~~~~~p~~~~~ 288 (337)
.+.++.+++.+|++..+
T Consensus 91 ~~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 91 LKYVRGLLQTEPQNNQA 107 (152)
T ss_dssp HHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHhcCCCCHHH
Confidence 99999999999987544
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.14 E-value=2.1e-05 Score=66.34 Aligned_cols=235 Identities=12% Similarity=0.109 Sum_probs=173.1
Q ss_pred chHhHHHHHHHHHhcCChHHHHHHHHHcccCChhhHHHHHHHHHcCCChhHHHHHHHHHhh--cCcccHHHHHHHHHhhc
Q 037592 20 NVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEE--IDLFSFGIVLRACAGLA 97 (337)
Q Consensus 20 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~ 97 (337)
.+.+|+.|..+..+.+++.+|++-| +...|+..|..+|.+..+.|++++-++++...++ .+...=+.|+-+|++.+
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~ 130 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTN 130 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSC
T ss_pred CccHHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhC
Confidence 4567889999999999999988877 4445778889999999999999999999988877 56666678999999999
Q ss_pred hhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC------------------------CCcHHhHH
Q 037592 98 ALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP------------------------VRNLITWN 153 (337)
Q Consensus 98 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------------------------~~~~~~~~ 153 (337)
+..+.++++. .|+..-...+.+-|...|.++.|.-+|..+. ..++.||.
T Consensus 131 rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWK 203 (624)
T 3lvg_A 131 RLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWK 203 (624)
T ss_dssp SSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHH
T ss_pred cHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHH
Confidence 8887766542 2666666778888888888888888887664 23667899
Q ss_pred HHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHh
Q 037592 154 SMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRI-KPKIEHYNCMVDLLGR 232 (337)
Q Consensus 154 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 232 (337)
.+-.+|...+++.-|.-.--.+. +.|+ -...++..|-..|.+++-+.+++..+ |. ......|+.|.-.|++
T Consensus 204 eV~~ACvd~~EfrLAqicGLniI---vhad--eL~elv~~YE~~G~f~ELIsLlEagl---glErAHmGmFTELaILYsK 275 (624)
T 3lvg_A 204 EVCFACVDGKEFRLAQMCGLHIV---VHAD--ELEELINYYQDRGYFEELITMLEAAL---GLERAHMGMFTELAILYSK 275 (624)
T ss_dssp HHTHHHHHSCTTTTTTHHHHHHH---CCSS--CCSGGGSSSSTTCCCTTSTTTHHHHT---TSTTCCHHHHHHHHHHHHS
T ss_pred HHHHHHhCchHHHHHHHhcchhc---ccHH--HHHHHHHHHHhCCCHHHHHHHHHHHh---CCCchhHHHHHHHHHHHHh
Confidence 99999999998887766544443 2222 22346677888999999999888775 33 3567888888888877
Q ss_pred cCChHHHHHHHHH----hcCC------CchhHHHHHHHHHhcCCChhHHH
Q 037592 233 AGLLEEAETLIEN----ADCR------HDSSLWEVLLGACTTFRNAHVAE 272 (337)
Q Consensus 233 ~g~~~~A~~~~~~----~~~~------~~~~~~~~l~~~~~~~g~~~~a~ 272 (337)
- ++++..+.++- +.++ -....|.-++-.|.+-.+++.|.
T Consensus 276 Y-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 276 F-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp S-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred c-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 5 55555555543 3222 13445777777777777777665
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0025 Score=50.43 Aligned_cols=53 Identities=2% Similarity=-0.182 Sum_probs=25.1
Q ss_pred CChhHHHHHHHHHHhcCCCc-cchHHHHHHHHHHc-CChhhHHHHHHHHHHhCCc
Q 037592 266 RNAHVAERVAKKIMELKPDC-HLSYVLLDNVYRAV-GRWNDAFKIRTLMKYSGVK 318 (337)
Q Consensus 266 g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~~~~ 318 (337)
|+.++|.+.|+++++++|+. ..++....+.++.. |+.++|.+.+++.......
T Consensus 218 Gd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 218 GGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp CCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred CCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 45555555555555555532 44444444444442 4455555555544443333
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.011 Score=38.36 Aligned_cols=68 Identities=9% Similarity=-0.019 Sum_probs=40.2
Q ss_pred CCCHHHHHHHHHHHHhcCC---hHHHHHHHHHh-cCCC-chhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCC
Q 037592 217 KPKIEHYNCMVDLLGRAGL---LEEAETLIENA-DCRH-DSSLWEVLLGACTTFRNAHVAERVAKKIMELKPD 284 (337)
Q Consensus 217 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 284 (337)
+.++..+..+..++...++ .++|..++++. ...| ++.....+...+.+.|++++|+..|+++.+..|.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 3455566666666544333 56677766652 3333 3444455556667777777777777777776666
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.92 E-value=1.3e-07 Score=79.32 Aligned_cols=241 Identities=12% Similarity=0.089 Sum_probs=166.1
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHHhhcCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHh
Q 037592 51 NSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAK 130 (337)
Q Consensus 51 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 130 (337)
.+..|..|..+....++..+|++.|-+. .|+..|..++.++.+.|.+++-..++.-..+.. .++.+=+.|+-+|++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHHh
Confidence 4667999999999999999998877544 677789999999999999999999987766553 455566789999999
Q ss_pred cCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcC--------------------CCCCHhHHHHH
Q 037592 131 CGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG--------------------TKPDHVSFIGV 190 (337)
Q Consensus 131 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--------------------~~p~~~~~~~l 190 (337)
.++..+-.+++. .|+..-......-|...|.++.|.-+|..+.... -.-+..||..+
T Consensus 129 ~~rL~elEefl~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV 205 (624)
T 3lvg_A 129 TNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEV 205 (624)
T ss_dssp SCSSSTTTSTTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHH
T ss_pred hCcHHHHHHHHc---CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHH
Confidence 999765544432 4555555666677777777777766665432210 01245677777
Q ss_pred HHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH-hc-CCCchhHHHHHHHHHhcCCCh
Q 037592 191 LSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIEN-AD-CRHDSSLWEVLLGACTTFRNA 268 (337)
Q Consensus 191 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~-~~~~~~~~~~l~~~~~~~g~~ 268 (337)
-.+|...+.+.-|.-.--.++- .++ -...++..|-..|-+++-+.+++. +| .+.....|+-|.-.|++- ++
T Consensus 206 ~~ACvd~~EfrLAqicGLniIv----had--eL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY-~P 278 (624)
T 3lvg_A 206 CFACVDGKEFRLAQMCGLHIVV----HAD--ELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KP 278 (624)
T ss_dssp THHHHHSCTTTTTTHHHHHHHC----CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS-CT
T ss_pred HHHHhCchHHHHHHHhcchhcc----cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc-CH
Confidence 7788888877776554444432 122 222356667788888888888875 44 345666777777777766 55
Q ss_pred hHHHHHHHHHHh-cC-CCccchHHHHHHHHHHcCChhhHHHHHHHH
Q 037592 269 HVAERVAKKIME-LK-PDCHLSYVLLDNVYRAVGRWNDAFKIRTLM 312 (337)
Q Consensus 269 ~~a~~~~~~~~~-~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 312 (337)
++..+.++.... ++ | .++++|.+..-|.++.-+|..-
T Consensus 279 eKlmEHlklf~sriNip-------KviracE~ahLW~ElvfLY~~y 317 (624)
T 3lvg_A 279 QKMREHLELFWSRVNIP-------KVLRAAEQAHLWAELVFLYDKY 317 (624)
T ss_dssp THHHHHHTTSSSSSCCT-------TTHHHHTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHH-------HHHHHHHHHhhHHHHHHHHhcc
Confidence 555555544333 22 2 3678888888899888877654
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0054 Score=43.52 Aligned_cols=82 Identities=7% Similarity=-0.075 Sum_probs=64.9
Q ss_pred hHHHHHHHHHh--cCCCchhHHHHHHHHHhcCC---ChhHHHHHHHHHHhcC-C-CccchHHHHHHHHHHcCChhhHHHH
Q 037592 236 LEEAETLIENA--DCRHDSSLWEVLLGACTTFR---NAHVAERVAKKIMELK-P-DCHLSYVLLDNVYRAVGRWNDAFKI 308 (337)
Q Consensus 236 ~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~ 308 (337)
+..+++-|.+. ...++..+.-.+..++++.+ +.++++.++++..+.. | +...++..|.-+|.+.|++++|.++
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 34555555543 23467777777788888888 6679999999999987 7 4578899999999999999999999
Q ss_pred HHHHHHhCC
Q 037592 309 RTLMKYSGV 317 (337)
Q Consensus 309 ~~~m~~~~~ 317 (337)
++.+.+...
T Consensus 94 ~~~lL~ieP 102 (152)
T 1pc2_A 94 VRGLLQTEP 102 (152)
T ss_dssp HHHHHHHCT
T ss_pred HHHHHhcCC
Confidence 999988554
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.037 Score=43.86 Aligned_cols=142 Identities=9% Similarity=0.036 Sum_probs=78.3
Q ss_pred hhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcH--HhHHHHHH-HHHhC--CC------Hh
Q 037592 98 ALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNL--ITWNSMIS-GFAQN--GR------GE 166 (337)
Q Consensus 98 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~l~~-~~~~~--~~------~~ 166 (337)
+...|..+|.+..+.+..- ..+-..=..--.+.++..+..+.+.++.+.++ ..|..++. .+... |+ ..
T Consensus 102 ~~~RA~~Ly~ra~~y~~ra-L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~ 180 (301)
T 3u64_A 102 AYSRARKLYLRGARYALSS-LETAYPGFTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVH 180 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHSTTHHHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH-HHHhCccHHHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHH
Confidence 3456666766666554310 00000000012344555566666666664443 34555543 23322 32 45
Q ss_pred HHHHHHHHHHhcCCCCC---HhHHHHHHHHHhhc-----CchhhHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhc-CC
Q 037592 167 EALRIFDDMTEGGTKPD---HVSFIGVLSACSHM-----GLIDRGRKHFASMTKEYRIKP--KIEHYNCMVDLLGRA-GL 235 (337)
Q Consensus 167 ~a~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~-g~ 235 (337)
.|...+++..+ +.|+ ...|..+...|... |+.++|.+.|++.++- .| +..++......++.. |+
T Consensus 181 ~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L---nP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 181 AAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY---CSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH---CCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh---CCCCCchHHHHHHHHHHHhcCC
Confidence 66666676666 4454 34666666666663 7777777777777644 34 256666667777763 77
Q ss_pred hHHHHHHHHH
Q 037592 236 LEEAETLIEN 245 (337)
Q Consensus 236 ~~~A~~~~~~ 245 (337)
.+++.+.+++
T Consensus 256 ~~~a~~~L~k 265 (301)
T 3u64_A 256 RAGFDEALDR 265 (301)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777777776
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.64 E-value=0.012 Score=38.97 Aligned_cols=66 Identities=11% Similarity=-0.105 Sum_probs=54.9
Q ss_pred chhHHHHHHHHHhcCCChhHHHHHHHHHHhcC-------CCccchHHHHHHHHHHcCChhhHHHHHHHHHHhC
Q 037592 251 DSSLWEVLLGACTTFRNAHVAERVAKKIMELK-------PDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSG 316 (337)
Q Consensus 251 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 316 (337)
+...+-.+...+...|+++.|...++++.+.. +..+..+..|+.++.+.|++++|...+++..+..
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 34456677888999999999999999998732 3346689999999999999999999999988743
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.056 Score=49.25 Aligned_cols=123 Identities=17% Similarity=0.138 Sum_probs=80.5
Q ss_pred HHHHHHHhhcCc-hhhHHHHHHHHHHhcCCCCCHHHH--HHHHHHHHhcCC-hHHHHHHHHH-h--------cCCC-ch-
Q 037592 188 IGVLSACSHMGL-IDRGRKHFASMTKEYRIKPKIEHY--NCMVDLLGRAGL-LEEAETLIEN-A--------DCRH-DS- 252 (337)
Q Consensus 188 ~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~-~~~A~~~~~~-~--------~~~~-~~- 252 (337)
..++..+.-.++ .+.|..+++++.+. .|...++ ..++..+...++ --+|.+++.+ + ...+ +.
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~---~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~ 328 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKK---DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDAD 328 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhh---CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccc
Confidence 445555555556 57899999998554 4543333 233333333332 2234444432 1 1111 11
Q ss_pred ---------hHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHH
Q 037592 253 ---------SLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMK 313 (337)
Q Consensus 253 ---------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 313 (337)
.....-...+...|+++.|+++.+++....|++-.+|..|..+|...|+++.|+-.++.+.
T Consensus 329 ~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 329 SARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 0111122447789999999999999999999999999999999999999999999999884
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.26 E-value=0.15 Score=34.81 Aligned_cols=92 Identities=11% Similarity=0.009 Sum_probs=63.1
Q ss_pred hcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHH---HHHHHHHhc-CC-C-ch-hHHHHHHHHHhcCCCh
Q 037592 196 HMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE---AETLIENAD-CR-H-DS-SLWEVLLGACTTFRNA 268 (337)
Q Consensus 196 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~-~~-~-~~-~~~~~l~~~~~~~g~~ 268 (337)
.......+.+-|...... | .++..+-..+..++.+..+... ++.+++.+- .. | .. .....+.-++.+.|++
T Consensus 13 ~~~~l~~~~~~y~~e~~~-~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y 90 (126)
T 1nzn_A 13 SVEDLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEY 90 (126)
T ss_dssp HHHHHHHHHHHHHHHHHH-S-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHHhcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhH
Confidence 334455566666665443 3 3777777778888888776555 788888753 22 3 12 2334455678999999
Q ss_pred hHHHHHHHHHHhcCCCccchH
Q 037592 269 HVAERVAKKIMELKPDCHLSY 289 (337)
Q Consensus 269 ~~a~~~~~~~~~~~p~~~~~~ 289 (337)
+.|.+.++.+++..|++..+.
T Consensus 91 ~~A~~~~~~lL~~eP~n~QA~ 111 (126)
T 1nzn_A 91 EKALKYVRGLLQTEPQNNQAK 111 (126)
T ss_dssp HHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHH
Confidence 999999999999999875543
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=96.00 E-value=0.81 Score=40.92 Aligned_cols=113 Identities=9% Similarity=-0.024 Sum_probs=52.4
Q ss_pred CHhHHHHHHHHHHhcCCCCCHhHHH----HHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHH
Q 037592 164 RGEEALRIFDDMTEGGTKPDHVSFI----GVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEA 239 (337)
Q Consensus 164 ~~~~a~~~~~~m~~~~~~p~~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 239 (337)
+.+.|...|....+... .+..... .+.......+...++...+...... ..+.....-.+....+.|+++.|
T Consensus 229 d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp CHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred CHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHHH
Confidence 55666666666544321 1222111 1122222233234444455544221 22322233333333455777777
Q ss_pred HHHHHHhcCCC-c-hhHHHHHHHHHhcCCChhHHHHHHHHHHh
Q 037592 240 ETLIENADCRH-D-SSLWEVLLGACTTFRNAHVAERVAKKIME 280 (337)
Q Consensus 240 ~~~~~~~~~~~-~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 280 (337)
...|+.+...+ + .....-+..++...|+.++|..+|+.+.+
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 77777665332 1 22122333455666777777777766654
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.75 E-value=0.29 Score=33.77 Aligned_cols=61 Identities=10% Similarity=0.122 Sum_probs=35.2
Q ss_pred hHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHH
Q 037592 151 TWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTK 212 (337)
Q Consensus 151 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 212 (337)
.....+......|+-++-.+++..+... .+|++.....+..+|.+.|+..+|.+++.++.+
T Consensus 93 ~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 93 HVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 3344455556666666666666664332 345555555666666666666666666666643
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.63 E-value=0.26 Score=35.30 Aligned_cols=130 Identities=10% Similarity=-0.022 Sum_probs=67.1
Q ss_pred cCCCCchHh--HHHHHHHHHhcCChHHHHHHHHHcc-----cCCh-------hhHHHHHHHHHcCCChhHHHHHHHHHhh
Q 037592 15 LGLCGNVVV--ESSLVDMYGKCGLVDESHRVFDKML-----KKNS-------VSSSALLQGYCQTGDFESVIRIFREMEE 80 (337)
Q Consensus 15 ~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 80 (337)
.|+.|.... +-.-+..+...|.++.|+-+.+.+. .++. .+...+.+++...|++.+|...|++..+
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 355554443 3334667778888888888777651 1221 1456677888888888888888888655
Q ss_pred -----cCcc-cHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC--CCcHHhH
Q 037592 81 -----IDLF-SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP--VRNLITW 152 (337)
Q Consensus 81 -----~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~ 152 (337)
+... +...+. . ...... ......+..+-..+..+|.+.|++++|+.+++.++ .+++..-
T Consensus 92 ~~k~l~k~~s~~~~~~-~---~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kvn 158 (167)
T 3ffl_A 92 QKKALSKTSKVRPSTG-N---SASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKIN 158 (167)
T ss_dssp HHHCC---------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHHH
T ss_pred HHHHHhcCCCcccccc-c---cCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHHH
Confidence 1111 110010 0 000000 00111234455567788888888888888888876 3344443
Q ss_pred HHHHH
Q 037592 153 NSMIS 157 (337)
Q Consensus 153 ~~l~~ 157 (337)
-.|..
T Consensus 159 m~Lak 163 (167)
T 3ffl_A 159 MLLAN 163 (167)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 33433
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.57 E-value=0.12 Score=36.28 Aligned_cols=109 Identities=7% Similarity=0.014 Sum_probs=68.1
Q ss_pred CHhHHHHHHHHHhhcCch------hhHHHHHHHHHHhcCCCCCH-HHHHHHHH------HHHhcCChHHHHHHHHHh---
Q 037592 183 DHVSFIGVLSACSHMGLI------DRGRKHFASMTKEYRIKPKI-EHYNCMVD------LLGRAGLLEEAETLIENA--- 246 (337)
Q Consensus 183 ~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~-~~~~~l~~------~~~~~g~~~~A~~~~~~~--- 246 (337)
|..+|-..+...-+.|+. ++..++|++++. .++|+. ..|...+. .+...++.++|.++|+.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 556666666666667887 777788888765 445642 11111111 123457888888888764
Q ss_pred cCCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHH
Q 037592 247 DCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDN 294 (337)
Q Consensus 247 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 294 (337)
..+- ...|-.....-.+.|+...|.+++.+++...|.....+...+.
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~ 136 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALR 136 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHH
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 1221 5556666666778888888888888888877775445444443
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.51 E-value=0.2 Score=35.86 Aligned_cols=113 Identities=7% Similarity=-0.066 Sum_probs=55.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCC-----CCcH-------HhHHHHHHHHHhCCCHhHHHHHHHHHHhcC-CCCCH-hHH
Q 037592 122 SALVDLYAKCGCVDFAHQIFLQMP-----VRNL-------ITWNSMISGFAQNGRGEEALRIFDDMTEGG-TKPDH-VSF 187 (337)
Q Consensus 122 ~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~-~~~ 187 (337)
..-+..+...|.++.|+-+.+.+. .++. .++..+..++...|++..|...|++.++.. .-+.. .+.
T Consensus 24 ~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~ 103 (167)
T 3ffl_A 24 IDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVR 103 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 334555666677777666655543 2221 244555666666777777777776654321 11111 111
Q ss_pred HHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhcC
Q 037592 188 IGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADC 248 (337)
Q Consensus 188 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 248 (337)
..+. ...... .......+...-..+..+|.+.|++++|+.+++.++.
T Consensus 104 ~~~~----~~ss~p----------~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 104 PSTG----NSASTP----------QSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp ---------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred cccc----ccCCCc----------ccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 0000 000000 0001223344555577778888888888888887643
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.31 Score=47.31 Aligned_cols=157 Identities=8% Similarity=-0.018 Sum_probs=83.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHcccCChhhHHHHHHHHHcCCChhHHHHHHHHHhh---cCcccHHHHHHHHHhhchhhhh
Q 037592 26 SLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEE---IDLFSFGIVLRACAGLAALRLG 102 (337)
Q Consensus 26 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a 102 (337)
.++..+...+..+-+.++.... +.+......+..+|...|++++|.++|++... .+..... .
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~--------------~ 881 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFA--------------V 881 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCS--------------S
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhh--------------h
Confidence 4555666677777776655443 34555556677888888888888888887643 1110000 0
Q ss_pred HHHHHHHHHhhCC--CCchhHHHHHHHHHhcCCHHHHHHHHhcCC----CCcH----HhHHHHHHHHHhCCCHhHHHHHH
Q 037592 103 KEVHCQYIRRSGC--KDVIIESALVDLYAKCGCVDFAHQIFLQMP----VRNL----ITWNSMISGFAQNGRGEEALRIF 172 (337)
Q Consensus 103 ~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~l~~~~~~~~~~~~a~~~~ 172 (337)
..-+..+...... .-..-|..++..+.+.|.++.+.++-.... ..+. ..|..+...+...|++++|...+
T Consensus 882 ~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL 961 (1139)
T 4fhn_B 882 LREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVAL 961 (1139)
T ss_dssp HHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHH
T ss_pred hcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 0000111111110 112334556666666666666655443322 1111 24666777777777777777777
Q ss_pred HHHHhcCCCCCHhHHHHHHHHHhhcCc
Q 037592 173 DDMTEGGTKPDHVSFIGVLSACSHMGL 199 (337)
Q Consensus 173 ~~m~~~~~~p~~~~~~~l~~~~~~~~~ 199 (337)
-.+..... -...+..++...|..|.
T Consensus 962 ~~~pd~~~--r~~cLr~LV~~lce~~~ 986 (1139)
T 4fhn_B 962 MVLSTTPL--KKSCLLDFVNQLTKQGK 986 (1139)
T ss_dssp HHHHHSSS--CHHHHHHHHHHHHHHCC
T ss_pred HhCCCHHH--HHHHHHHHHHHHHhCCC
Confidence 66654322 23344555555554443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=95.39 E-value=0.047 Score=45.90 Aligned_cols=67 Identities=16% Similarity=0.061 Sum_probs=45.8
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHH-----hCCccCCC
Q 037592 256 EVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKY-----SGVKKMPG 322 (337)
Q Consensus 256 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~ 322 (337)
..++..+...|++++++..+..+...+|-+...|..++.++...|+..+|++.|+++.+ .|+.|.|.
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 33455566777777777777777777777667777777777777777777777776543 36665444
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.37 E-value=0.28 Score=44.82 Aligned_cols=120 Identities=15% Similarity=-0.029 Sum_probs=80.1
Q ss_pred HHHHHHHHhcCC-hHHHHHHHHHcccCCh--hhH--HHHHHHHHcCC-ChhHHHHHHHHHhh---------cCcc-----
Q 037592 25 SSLVDMYGKCGL-VDESHRVFDKMLKKNS--VSS--SALLQGYCQTG-DFESVIRIFREMEE---------IDLF----- 84 (337)
Q Consensus 25 ~~l~~~~~~~~~-~~~A~~~~~~~~~~~~--~~~--~~l~~~~~~~g-~~~~A~~~~~~~~~---------~~~~----- 84 (337)
..|+..+...|+ ++.|+.+|+++...++ .++ ..++..+...+ +--+|.+++.+..+ +...
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 344555555666 5889999999854433 222 23333333332 23346666655542 1111
Q ss_pred -------cHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC
Q 037592 85 -------SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP 145 (337)
Q Consensus 85 -------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 145 (337)
....-...|...|+++.|+.+-++.+...+ .+-.+|..|..+|...|+++.|+-.++.++
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aP-seF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELAL-DSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCc-hhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 122223456778999999999999998865 678999999999999999999999999885
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.24 E-value=0.11 Score=35.43 Aligned_cols=83 Identities=8% Similarity=-0.094 Sum_probs=62.0
Q ss_pred ChHHHHHHHHHhc--CCCchhHHHHHHHHHhcCCChhH---HHHHHHHHHhcC-C-CccchHHHHHHHHHHcCChhhHHH
Q 037592 235 LLEEAETLIENAD--CRHDSSLWEVLLGACTTFRNAHV---AERVAKKIMELK-P-DCHLSYVLLDNVYRAVGRWNDAFK 307 (337)
Q Consensus 235 ~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~ 307 (337)
.+..+++-|.+.. ..++..+--.+..++.+..+... ++.++++..... | ........|..++.+.|++++|.+
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3445555555431 23666666667778888887766 889999888866 5 345678889999999999999999
Q ss_pred HHHHHHHhCC
Q 037592 308 IRTLMKYSGV 317 (337)
Q Consensus 308 ~~~~m~~~~~ 317 (337)
.++.+.+...
T Consensus 96 ~~~~lL~~eP 105 (126)
T 1nzn_A 96 YVRGLLQTEP 105 (126)
T ss_dssp HHHHHHHHCT
T ss_pred HHHHHHHhCC
Confidence 9999988654
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.54 E-value=0.81 Score=32.23 Aligned_cols=93 Identities=13% Similarity=0.081 Sum_probs=50.5
Q ss_pred ChhhHHHHHHHHHcCCCh------hHHHHHHHHHhh---cCcc----cHHHHHH---HHHhhchhhhhHHHHHHHHHhhC
Q 037592 51 NSVSSSALLQGYCQTGDF------ESVIRIFREMEE---IDLF----SFGIVLR---ACAGLAALRLGKEVHCQYIRRSG 114 (337)
Q Consensus 51 ~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~---~~~~----~~~~l~~---~~~~~~~~~~a~~~~~~~~~~~~ 114 (337)
|..+|-..+...-+.|++ ++..++|++... |+.. .|-.+-- .+...++.++|.++|+.+++.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h- 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC- 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-
Confidence 566666666666666666 666666666655 2211 1111100 1133367777777777776652
Q ss_pred CCCchhHHHHHHHHHhcCCHHHHHHHHhcC
Q 037592 115 CKDVIIESALVDLYAKCGCVDFAHQIFLQM 144 (337)
Q Consensus 115 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 144 (337)
+.-..+|......-.+.|++.+|.+++.+.
T Consensus 91 KkFAKiwi~~AqFEiRqgnl~kARkILg~A 120 (161)
T 4h7y_A 91 KKFAFVHISFAQFELSQGNVKKSKQLLQKA 120 (161)
T ss_dssp TTBHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 222555555555556666666666665543
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=94.51 E-value=1.6 Score=35.49 Aligned_cols=170 Identities=13% Similarity=0.073 Sum_probs=104.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHhHHHHHH----HHHHhcCCCCCHhHHHHHHHHH
Q 037592 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIF----DDMTEGGTKPDHVSFIGVLSAC 194 (337)
Q Consensus 119 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~m~~~~~~p~~~~~~~l~~~~ 194 (337)
..|.++..=|.+.+++++|++++.. -...+.+.|+...|-++- +-..+.+++++......++..+
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3455666778889999999987642 223455667766665544 4455667888888777777776
Q ss_pred hhcCchh-hHHHHHHHHHH---hcC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhcCCCchhHHHHHHHHHhcCCCh
Q 037592 195 SHMGLID-RGRKHFASMTK---EYR--IKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNA 268 (337)
Q Consensus 195 ~~~~~~~-~a~~~~~~~~~---~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 268 (337)
.....-+ .=.++++++++ +.| -.-++.....+...|.+.+++.+|+..|- .+..+.+..+..++.-+...+.
T Consensus 105 ~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~- 182 (336)
T 3lpz_A 105 RLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDE- 182 (336)
T ss_dssp TTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSC-
T ss_pred HhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcC-
Confidence 6544311 11223333321 223 23467777888999999999999988874 4555555666555544433332
Q ss_pred hHHHHHHHHHHhcCCCccc-hHHHHHHHHHHcCChhhHHHHHHHHHHh
Q 037592 269 HVAERVAKKIMELKPDCHL-SYVLLDNVYRAVGRWNDAFKIRTLMKYS 315 (337)
Q Consensus 269 ~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 315 (337)
|.... .....+--|.-.++...|..+++.+.+.
T Consensus 183 --------------~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~ 216 (336)
T 3lpz_A 183 --------------SHTAPLYCARAVLPYLLVANVRAANTAYRIFTSA 216 (336)
T ss_dssp --------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --------------CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 22222 2334455667778999998888777653
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.35 E-value=1.4 Score=37.74 Aligned_cols=181 Identities=10% Similarity=0.077 Sum_probs=113.3
Q ss_pred CCHHHHHHHHhcCC---------CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhc-CCCCCHhHHHHHHHHH----hhc
Q 037592 132 GCVDFAHQIFLQMP---------VRNLITWNSMISGFAQNGRGEEALRIFDDMTEG-GTKPDHVSFIGVLSAC----SHM 197 (337)
Q Consensus 132 g~~~~A~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~l~~~~----~~~ 197 (337)
|+++.|++.+..+. .........++..|...|+++...+.+.-+.+. |..+. ....++..+ ...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~--ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKL--SIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHH--HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHhcC
Confidence 67888888765443 123456777889999999999998888766554 33222 223333322 223
Q ss_pred CchhhH--HHHHHHHH--HhcCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHhc-----CCCc---hhHHHHHHHHH
Q 037592 198 GLIDRG--RKHFASMT--KEYRIKP---KIEHYNCMVDLLGRAGLLEEAETLIENAD-----CRHD---SSLWEVLLGAC 262 (337)
Q Consensus 198 ~~~~~a--~~~~~~~~--~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~---~~~~~~l~~~~ 262 (337)
...+.. ..+.+... ....+-. .......|...|...|++.+|.+++..+. ..+. ...+...+..|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 322221 11221110 0001111 22345678889999999999999998752 1111 23455566789
Q ss_pred hcCCChhHHHHHHHHHHh---cCCCcc----chHHHHHHHHHHcCChhhHHHHHHHHHH
Q 037592 263 TTFRNAHVAERVAKKIME---LKPDCH----LSYVLLDNVYRAVGRWNDAFKIRTLMKY 314 (337)
Q Consensus 263 ~~~g~~~~a~~~~~~~~~---~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 314 (337)
...+++..|..+++++.. -.+..+ ..+...+..+...++|.+|.+.|.+..+
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 999999999999998753 222212 3566778888888999999988887764
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=94.27 E-value=3.6 Score=38.64 Aligned_cols=246 Identities=9% Similarity=-0.058 Sum_probs=115.2
Q ss_pred HHHHhcCChHHHHHHHHHcccC----Chhh--HHHHHHHHHcCCChhHHHHHHHHHhh-cC--------ccc--HHHHHH
Q 037592 29 DMYGKCGLVDESHRVFDKMLKK----NSVS--SSALLQGYCQTGDFESVIRIFREMEE-ID--------LFS--FGIVLR 91 (337)
Q Consensus 29 ~~~~~~~~~~~A~~~~~~~~~~----~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~-~~--------~~~--~~~l~~ 91 (337)
-+....|+.++++.+++..... +..+ =..+.-+.+..|..+++..++..... ++ ... -..+.-
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 3455677777888887776541 2221 22333445555555567776666554 33 111 111111
Q ss_pred HHHhhch-hhhhHHHHHHHHHhhCCCCchhHH--HHHHHHHhcCCHHHHHHHHhcCC-CCcHH--hHHHHHHHHHhCCCH
Q 037592 92 ACAGLAA-LRLGKEVHCQYIRRSGCKDVIIES--ALVDLYAKCGCVDFAHQIFLQMP-VRNLI--TWNSMISGFAQNGRG 165 (337)
Q Consensus 92 ~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~-~~~~~--~~~~l~~~~~~~~~~ 165 (337)
++.-.|. -+++.+.+..++...- +...... .|...+.-.|+-+....++..+. ..+.. -.-.+.-++...|+.
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCG
T ss_pred HHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCCh
Confidence 2222222 2345555555554311 1111111 23333445566555555554433 11222 223333444567777
Q ss_pred hHHHHHHHHHHhcCCCCCHhHHH---HHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 037592 166 EEALRIFDDMTEGGTKPDHVSFI---GVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETL 242 (337)
Q Consensus 166 ~~a~~~~~~m~~~~~~p~~~~~~---~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 242 (337)
+.+..+.+.+... ..| ..-|. ++..+|+..|+.....+++..+..+ ...+..-...+.-++...|+.+.+.++
T Consensus 541 e~~~~li~~L~~~-~dp-~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 541 ELADDLITKMLAS-DES-LLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp GGGHHHHHHHHHC-SCH-HHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred HHHHHHHHHHHhC-CCH-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 7777777777653 122 22222 2345667777776666677777432 122333223333344446666666666
Q ss_pred HHHhc--CCCchhHHHHHHHHHhcCCCh-hHHHHHHHHHH
Q 037592 243 IENAD--CRHDSSLWEVLLGACTTFRNA-HVAERVAKKIM 279 (337)
Q Consensus 243 ~~~~~--~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~ 279 (337)
++.+. ..|.+..-..+.-+....|+. .+++..+..+.
T Consensus 617 v~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 617 VQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp TTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 65432 233333333333344444443 45555555554
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=94.12 E-value=3.9 Score=38.43 Aligned_cols=285 Identities=12% Similarity=0.000 Sum_probs=139.5
Q ss_pred hHHHHHHHHHhcCChHHH-HHHH-HHccc-CChhhHHH-HHHHHHcCCChhHHHHHHHHHhh-c-CcccHH----HHHHH
Q 037592 23 VESSLVDMYGKCGLVDES-HRVF-DKMLK-KNSVSSSA-LLQGYCQTGDFESVIRIFREMEE-I-DLFSFG----IVLRA 92 (337)
Q Consensus 23 ~~~~l~~~~~~~~~~~~A-~~~~-~~~~~-~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~-~-~~~~~~----~l~~~ 92 (337)
+-.++.+++...|-.... +... +.+.+ .+..-+.+ ..-+.+..|+.++++.++..... . ....+. .+.-+
T Consensus 341 ~A~~f~Naf~naG~~~D~~l~~~~~Wl~k~~~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLG 420 (963)
T 4ady_A 341 TAVSVANGFMHAGTTDNSFIKANLPWLGKAQNWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLG 420 (963)
T ss_dssp HHHHHHHHHHTTTTCCCHHHHHCHHHHHHCCTHHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcchhhhcchhhhhccchHHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHH
Confidence 334566777777754332 2222 22222 23333333 34457778888888887776553 1 122121 12223
Q ss_pred HHhhchhhhhHHHHHHHHHhhC-------CCCchhHHHHHHHHHhcCC-HHHHHHHHhcCC-CCcHH----hHHHHHHHH
Q 037592 93 CAGLAALRLGKEVHCQYIRRSG-------CKDVIIESALVDLYAKCGC-VDFAHQIFLQMP-VRNLI----TWNSMISGF 159 (337)
Q Consensus 93 ~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~-~~~~~----~~~~l~~~~ 159 (337)
....|..+++..++...+...- .+....-..+.-+.+-.|. -+++.+.+..+. ..+.. +-.+|...+
T Consensus 421 li~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~ 500 (963)
T 4ady_A 421 LIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCM 500 (963)
T ss_dssp HHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhh
Confidence 3444554567777776665432 0112222334334433342 234444444433 23322 122334445
Q ss_pred HhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHH--HHHhhcCchhhHHHHHHHHHHhcCCCCCHHHH--HHHHHHHHhcCC
Q 037592 160 AQNGRGEEALRIFDDMTEGGTKPDHVSFIGVL--SACSHMGLIDRGRKHFASMTKEYRIKPKIEHY--NCMVDLLGRAGL 235 (337)
Q Consensus 160 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~ 235 (337)
.-.|+.+-...++..+.+. . +......+. -++...|+.+.+..+.+.+... ..|....- ..+..+|+..|+
T Consensus 501 vGTgn~~ai~~LL~~~~e~-~--~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~--~dp~vRygaa~alglAyaGTGn 575 (963)
T 4ady_A 501 LGTGKPEAIHDMFTYSQET-Q--HGNITRGLAVGLALINYGRQELADDLITKMLAS--DESLLRYGGAFTIALAYAGTGN 575 (963)
T ss_dssp TTCCCHHHHHHHHHHHHHC-S--CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTSCC
T ss_pred cccCCHHHHHHHHHHHhcc-C--cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHhcCCCC
Confidence 6677777777777776653 1 223333333 3444678888888888887432 12322222 234556778888
Q ss_pred hHHHHHHHHHhcCCC--chhHHHHHHHHHhcCCChhHHHHHHHHHHh-cCCCccchHHHHHHHHHHcCCh-hhHHHHHHH
Q 037592 236 LEEAETLIENADCRH--DSSLWEVLLGACTTFRNAHVAERVAKKIME-LKPDCHLSYVLLDNVYRAVGRW-NDAFKIRTL 311 (337)
Q Consensus 236 ~~~A~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~ 311 (337)
.....+++..+...+ ++.....+.-++...|+.+.+.++++.+.+ .+|. ...-..+..+....|.. .+++.++..
T Consensus 576 ~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~d~~-VR~gAalALGli~aGn~~~~aid~L~~ 654 (963)
T 4ady_A 576 NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSHNAH-VRCGTAFALGIACAGKGLQSAIDVLDP 654 (963)
T ss_dssp HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCSCHH-HHHHHHHHHHHHTSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 777777887764332 233223333345556666666666654443 2222 22222333333333333 345555555
Q ss_pred HH
Q 037592 312 MK 313 (337)
Q Consensus 312 m~ 313 (337)
+.
T Consensus 655 L~ 656 (963)
T 4ady_A 655 LT 656 (963)
T ss_dssp HH
T ss_pred Hc
Confidence 43
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.88 E-value=2.8 Score=35.89 Aligned_cols=181 Identities=12% Similarity=0.101 Sum_probs=102.9
Q ss_pred CCChhHHHHHHHHHhh-----cCc----ccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHH----HHHhc
Q 037592 65 TGDFESVIRIFREMEE-----IDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVD----LYAKC 131 (337)
Q Consensus 65 ~g~~~~A~~~~~~~~~-----~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~ 131 (337)
.|+++.|++.+-.+.+ .|. .....++..|...++++...+.+.-+.+..... ......+++ .....
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcC
Confidence 3677888877766654 222 235667778888888888877766554432211 222223332 22223
Q ss_pred CCHH--HHHHHHhcCCC---C-------cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhc--CCCCC---HhHHHHHHHHH
Q 037592 132 GCVD--FAHQIFLQMPV---R-------NLITWNSMISGFAQNGRGEEALRIFDDMTEG--GTKPD---HVSFIGVLSAC 194 (337)
Q Consensus 132 g~~~--~A~~~~~~~~~---~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~p~---~~~~~~l~~~~ 194 (337)
...+ .-..+.+.... . .......|...|...|++.+|.+++..+... |..+. ...+...+..|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 3222 22333333331 1 1122355677788888888888888887543 22221 13455556777
Q ss_pred hhcCchhhHHHHHHHHHHh-cCC--CCC--HHHHHHHHHHHHhcCChHHHHHHHHHh
Q 037592 195 SHMGLIDRGRKHFASMTKE-YRI--KPK--IEHYNCMVDLLGRAGLLEEAETLIENA 246 (337)
Q Consensus 195 ~~~~~~~~a~~~~~~~~~~-~~~--~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 246 (337)
...+++..|..+++.+... ... +|+ ...+..++..+...+++.+|-+.|.++
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 7888888888888776321 111 222 234556666777778888887776665
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=93.67 E-value=5.6 Score=38.71 Aligned_cols=143 Identities=11% Similarity=-0.004 Sum_probs=84.1
Q ss_pred HHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCC---------------------
Q 037592 89 VLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVR--------------------- 147 (337)
Q Consensus 89 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------------------- 147 (337)
++..+...+..+.+.++. .. .+.+......+..+|...|++++|.+.|.+....
T Consensus 818 l~~~l~~~~~~~~~~~l~----~~-~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLI----GW-LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHH----HH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHh----hh-ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 444455555555554432 11 2234444455677888888888888888776410
Q ss_pred -----cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCH----hHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCC
Q 037592 148 -----NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDH----VSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKP 218 (337)
Q Consensus 148 -----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 218 (337)
-..-|.-++..+.+.|.++.+.++-....+...+-+. ..|..+..++...|++++|...+-.+. .. ..
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~p-d~--~~ 969 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLS-TT--PL 969 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHH-HS--SS
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCC-CH--HH
Confidence 0122555667777778888777777666554221111 145667777778888888877776663 22 23
Q ss_pred CHHHHHHHHHHHHhcCChHHH
Q 037592 219 KIEHYNCMVDLLGRAGLLEEA 239 (337)
Q Consensus 219 ~~~~~~~l~~~~~~~g~~~~A 239 (337)
-......|+..++..|+.+.-
T Consensus 970 r~~cLr~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGKINQL 990 (1139)
T ss_dssp CHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHHHhCCChhhh
Confidence 345566666666666555443
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=93.63 E-value=2.3 Score=34.22 Aligned_cols=171 Identities=11% Similarity=0.063 Sum_probs=102.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHhHHHHH----HHHHHhcCCCCCHhHHHHHHHHH
Q 037592 119 IIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRI----FDDMTEGGTKPDHVSFIGVLSAC 194 (337)
Q Consensus 119 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~m~~~~~~p~~~~~~~l~~~~ 194 (337)
..|.++..=|.+.+++++|++++.. -...+.+.|+...|-++ .+-..+.+++++......++..+
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3455666777888888888887642 22345566777666554 44455667888888877777766
Q ss_pred hhcCchh-hHHHHHHHHHH---hcC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhcCCCchhHHHHHHHHHhcC---
Q 037592 195 SHMGLID-RGRKHFASMTK---EYR--IKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTF--- 265 (337)
Q Consensus 195 ~~~~~~~-~a~~~~~~~~~---~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~--- 265 (337)
.....-+ .=.++++++++ +.| ..-++.....+...|.+.|++.+|+..|- .+...++..+..++.-+...
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i-~~~~~s~~~~a~~l~~w~~~~~~ 181 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM-LGTHDSMIKYVDLLWDWLCQVDD 181 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH-TSCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH-hCCCccHHHHHHHHHHHHHhcCC
Confidence 5533211 12333444332 112 22467788889999999999999998776 43332455555555433332
Q ss_pred CChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHh
Q 037592 266 RNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYS 315 (337)
Q Consensus 266 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 315 (337)
|...++- ......+--|.-.|+...|..+++...+.
T Consensus 182 ~~~~e~d--------------lf~~RaVL~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 182 IEDSTVA--------------EFFSRLVFNYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp CCHHHHH--------------HHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred CCcchHH--------------HHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3332221 11223344566678888998888877543
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=93.38 E-value=2.6 Score=33.97 Aligned_cols=26 Identities=15% Similarity=0.158 Sum_probs=16.7
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHh
Q 037592 117 DVIIESALVDLYAKCGCVDFAHQIFL 142 (337)
Q Consensus 117 ~~~~~~~l~~~~~~~g~~~~A~~~~~ 142 (337)
++..+..+...|.+.|++.+|+..|-
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 45566666666666666666666654
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=93.35 E-value=0.96 Score=31.02 Aligned_cols=72 Identities=10% Similarity=0.009 Sum_probs=45.6
Q ss_pred CCCHHHHHHHHHHHHhcCC---hHHHHHHHHHh-cCCC--chhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccch
Q 037592 217 KPKIEHYNCMVDLLGRAGL---LEEAETLIENA-DCRH--DSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLS 288 (337)
Q Consensus 217 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 288 (337)
.|++.+-..+.-++.+..+ ..+++.+++.+ ...| ....+-.+.-++.+.|+++.|.+..+.+++..|++..+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 4566666666666666654 34566666653 2223 22334455567888888888888888888888886443
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=93.25 E-value=1.9 Score=32.18 Aligned_cols=180 Identities=10% Similarity=0.050 Sum_probs=95.9
Q ss_pred HHHHHcccCChhhHHHHHHHHHcCCChhHHHHHHHHHhhcCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhH
Q 037592 42 RVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121 (337)
Q Consensus 42 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 121 (337)
.+.+.+..++...-...+..+.+.|..+..-.+.+.+..+|...-...+.++...++. .+...+..++. .++..+-
T Consensus 23 ~L~~~L~~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---~~~~~vr 98 (211)
T 3ltm_A 23 MYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDE-RAVEPLIKALK---DEDGWVR 98 (211)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-HHHHHHHHHHc---CCCHHHH
Confidence 3333444455555555555555555533333333333335555555555555555543 33333333332 2556666
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchh
Q 037592 122 SALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLID 201 (337)
Q Consensus 122 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 201 (337)
...+.++.+.|+.+....+.+-+..++...-...+.++...|.. ++...+..+.+ .++...-...+.++.+.+. +
T Consensus 99 ~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-~ 173 (211)
T 3ltm_A 99 QSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGEIGG-E 173 (211)
T ss_dssp HHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-H
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-h
Confidence 66677777777655444455555567766666666666666654 34455555543 3455555556666666665 4
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 037592 202 RGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAG 234 (337)
Q Consensus 202 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 234 (337)
.+...+..++.+ ++..+-...+.++.+.+
T Consensus 174 ~~~~~L~~~l~d----~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 174 RVRAAMEKLAET----GTGFARKVAVNYLETHK 202 (211)
T ss_dssp HHHHHHHHHHHH----CCHHHHHHHHHHHHC--
T ss_pred hHHHHHHHHHhC----CCHHHHHHHHHHHHhcC
Confidence 555666666443 45556656666665544
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=93.17 E-value=1.1 Score=28.89 Aligned_cols=73 Identities=11% Similarity=-0.044 Sum_probs=36.1
Q ss_pred hhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHcccCChhhHHHHHHHHHcCCChhHHHHHHHHHh
Q 037592 3 KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREME 79 (337)
Q Consensus 3 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 79 (337)
++|.-+-+++...+. ...+-.+-+..+.+.|++++|..+.+....||..+|.+|... +.|..+++..-+..+.
T Consensus 23 qEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 23 EEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCEW--HLGLGAALDRRLAGLG 95 (115)
T ss_dssp HHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHH--HTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHH
Confidence 345555555555432 222222223445566666666666666666666665555443 4454454444444443
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=92.98 E-value=1.1 Score=28.78 Aligned_cols=72 Identities=10% Similarity=-0.041 Sum_probs=33.1
Q ss_pred hhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHcccCChhhHHHHHHHHHcCCChhHHHHHHHHH
Q 037592 3 KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREM 78 (337)
Q Consensus 3 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 78 (337)
++|.-+-+++...+. ...+-.+-+..+.+.|++++|..+.+....||..+|.+|... +.|..+++..-+..+
T Consensus 24 qEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~l 95 (116)
T 2p58_C 24 EEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRL 95 (116)
T ss_dssp HHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHH
Confidence 344444455544432 222222223444555555555555555555555555555433 334444444444333
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=92.60 E-value=1.8 Score=30.11 Aligned_cols=72 Identities=10% Similarity=0.009 Sum_probs=50.4
Q ss_pred CCCHHHHHHHHHHHHhcCC---hHHHHHHHHHh-cCCC--chhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccch
Q 037592 217 KPKIEHYNCMVDLLGRAGL---LEEAETLIENA-DCRH--DSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLS 288 (337)
Q Consensus 217 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 288 (337)
.|+..+-..+.-++.+..+ ..+++.+++.+ ...| .......+.-++.+.|+++.|.++.+.+++..|++..+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 5677777777777777665 44566777764 2223 22334445577999999999999999999999997443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=92.53 E-value=0.86 Score=38.23 Aligned_cols=62 Identities=8% Similarity=-0.061 Sum_probs=39.3
Q ss_pred HHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH--------hcCCCchh
Q 037592 190 VLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIEN--------ADCRHDSS 253 (337)
Q Consensus 190 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--------~~~~~~~~ 253 (337)
++..+...|+++++...+..++... +.+...+..+|.+|.+.|+..+|.+.|+. +|..|...
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~--P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEH--PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 4455556677777776666665443 45666777777777777777777766653 35666554
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=92.33 E-value=4.4 Score=33.91 Aligned_cols=162 Identities=10% Similarity=-0.047 Sum_probs=92.7
Q ss_pred ccHHHHHHHHHhhchhhhhHHHHHHHHHhhCC-C---CchhHHHHHHHHHhcC-CHHHHHHHHhcCC---CCcHHhH---
Q 037592 84 FSFGIVLRACAGLAALRLGKEVHCQYIRRSGC-K---DVIIESALVDLYAKCG-CVDFAHQIFLQMP---VRNLITW--- 152 (337)
Q Consensus 84 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~---~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~---~~~~~~~--- 152 (337)
.+...+...|.+.|+.++..+++......=.. + .......+++.+.... ..+.-.++..+.. ..+-.+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666778888888888888877665432111 1 2344456666665543 3333333333333 1111222
Q ss_pred ---HHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCH-----hHHHHHHHHHhhcCchhhHHHHHHHHHHhc-CCCCCHHHH
Q 037592 153 ---NSMISGFAQNGRGEEALRIFDDMTEGGTKPDH-----VSFIGVLSACSHMGLIDRGRKHFASMTKEY-RIKPKIEHY 223 (337)
Q Consensus 153 ---~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~ 223 (337)
.-++..|...|++.+|..++.++.+.-.+.|. ..+..-+..|...+++.++...+....... .+.+++...
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 24678888889999988888888764222222 234444566778888888888887764322 222343332
Q ss_pred HH----HHHHHH-hcCChHHHHHHHHH
Q 037592 224 NC----MVDLLG-RAGLLEEAETLIEN 245 (337)
Q Consensus 224 ~~----l~~~~~-~~g~~~~A~~~~~~ 245 (337)
.. -+..+. ..+++..|...|-+
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~e 206 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYE 206 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHH
Confidence 21 223455 67888888777644
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=91.77 E-value=2.3 Score=29.56 Aligned_cols=71 Identities=6% Similarity=-0.104 Sum_probs=53.8
Q ss_pred cCCCchhHHHHHHHHHhcCCC---hhHHHHHHHHHHhcCCC-ccchHHHHHHHHHHcCChhhHHHHHHHHHHhCC
Q 037592 247 DCRHDSSLWEVLLGACTTFRN---AHVAERVAKKIMELKPD-CHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGV 317 (337)
Q Consensus 247 ~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 317 (337)
+..|+..+--.+..++.+..+ ..+++.++++.....|. .......|..++.+.|++++|.++.+.+.+...
T Consensus 34 ~~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP 108 (144)
T 1y8m_A 34 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 108 (144)
T ss_dssp STTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCC
T ss_pred cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 445566655555556666554 55788899999887774 456778889999999999999999999988554
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.14 E-value=3.9 Score=34.79 Aligned_cols=96 Identities=9% Similarity=-0.092 Sum_probs=61.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhcCC------CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcC-CCCCHhHHHHH-
Q 037592 119 IIESALVDLYAKCGCVDFAHQIFLQMP------VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGG-TKPDHVSFIGV- 190 (337)
Q Consensus 119 ~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l- 190 (337)
.+...+...|.+.|+++.|.+.+.++. ..-...+...+..+...+++..+...+.++...- -.++....+.+
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 356678888888888888888888776 1234567777788888888888888888775431 11222222211
Q ss_pred ---HHHHhhcCchhhHHHHHHHHHHhc
Q 037592 191 ---LSACSHMGLIDRGRKHFASMTKEY 214 (337)
Q Consensus 191 ---~~~~~~~~~~~~a~~~~~~~~~~~ 214 (337)
...+...+++..|.+.|-++....
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 122335677888877777765543
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=91.01 E-value=2.1 Score=27.68 Aligned_cols=74 Identities=12% Similarity=0.174 Sum_probs=50.3
Q ss_pred CHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 037592 164 RGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLI 243 (337)
Q Consensus 164 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 243 (337)
+.-+..+-++.+......|+.....+.+.+|.+.+++..|.++++.+..+.| ....+|..+++ +-.-++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~lq---------ElkPtl 93 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ---------ELRPTL 93 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH---------HHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHHH---------HHhhHH
Confidence 4456666777777777888888888888888888888888888888744433 33445665543 334455
Q ss_pred HHhcC
Q 037592 244 ENADC 248 (337)
Q Consensus 244 ~~~~~ 248 (337)
+++|+
T Consensus 94 ~ELGI 98 (109)
T 1v54_E 94 NELGI 98 (109)
T ss_dssp HHHTC
T ss_pred HHhCC
Confidence 55554
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=90.71 E-value=1.6 Score=28.24 Aligned_cols=53 Identities=19% Similarity=0.277 Sum_probs=27.9
Q ss_pred HHHHHHHHc----ccCChhhHHHHHHHHHcCCChhHHHHHHHHHhh---cCcccHHHHHH
Q 037592 39 ESHRVFDKM----LKKNSVSSSALLQGYCQTGDFESVIRIFREMEE---IDLFSFGIVLR 91 (337)
Q Consensus 39 ~A~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~ 91 (337)
+..+-++.+ .-|++....+.+.+|-+.+++..|+++++-++. +...+|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lq 87 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 344444444 334555566666666666666666666665554 22333555443
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=90.61 E-value=2.1 Score=29.33 Aligned_cols=79 Identities=5% Similarity=-0.092 Sum_probs=55.9
Q ss_pred HHHHHHH-hcCCCchhHHHHHHHHHhcCC---ChhHHHHHHHHHHhcCCC-ccchHHHHHHHHHHcCChhhHHHHHHHHH
Q 037592 239 AETLIEN-ADCRHDSSLWEVLLGACTTFR---NAHVAERVAKKIMELKPD-CHLSYVLLDNVYRAVGRWNDAFKIRTLMK 313 (337)
Q Consensus 239 A~~~~~~-~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 313 (337)
.++-|.+ .+..|+..+--.+..++.+.. +...++.++++..+..|. ....+..|..++.+.|++++|.++.+.+.
T Consensus 26 l~~qy~~E~~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL 105 (134)
T 3o48_A 26 LRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 105 (134)
T ss_dssp HHHHHHHTTGGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3334433 344455555444455555554 456788999999887784 36688889999999999999999999988
Q ss_pred HhCC
Q 037592 314 YSGV 317 (337)
Q Consensus 314 ~~~~ 317 (337)
+...
T Consensus 106 ~~eP 109 (134)
T 3o48_A 106 EHER 109 (134)
T ss_dssp TTCT
T ss_pred hhCC
Confidence 7544
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=90.54 E-value=4.2 Score=30.29 Aligned_cols=170 Identities=14% Similarity=0.043 Sum_probs=91.3
Q ss_pred cCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHH
Q 037592 81 IDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFA 160 (337)
Q Consensus 81 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~ 160 (337)
++...-...+..+...+.. .+...+.+++. .++..+-...+.++.+.|..+....+.+.+..++...-...+.++.
T Consensus 31 ~~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~ 106 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDE-RAVEPLIKALK---DEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALG 106 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCc-cHHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 5555555555556555553 34444434443 2455566666667777776554445555555677766666667776
Q ss_pred hCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 037592 161 QNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAE 240 (337)
Q Consensus 161 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 240 (337)
..++.+ +...+..+.. .++...-...+.++.+.|..+ +...+..++. .++..+....+.++.+.+. .++.
T Consensus 107 ~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~----d~~~~vr~~a~~aL~~~~~-~~~~ 176 (211)
T 3ltm_A 107 QIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK----DEDGWVRQSAADALGEIGG-ERVR 176 (211)
T ss_dssp HHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT----CSSHHHHHHHHHHHHHHCS-HHHH
T ss_pred HhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc----CCCHHHHHHHHHHHHHhCc-hhHH
Confidence 666643 4444444443 345555555566666666543 3444444432 4566666667777777766 3444
Q ss_pred HHHHHhcCCCchhHHHHHHHHHhc
Q 037592 241 TLIENADCRHDSSLWEVLLGACTT 264 (337)
Q Consensus 241 ~~~~~~~~~~~~~~~~~l~~~~~~ 264 (337)
..+.++-..++...-...+.++..
T Consensus 177 ~~L~~~l~d~~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 177 AAMEKLAETGTGFARKVAVNYLET 200 (211)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHC
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHh
Confidence 444443223344333344444433
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.23 E-value=4.4 Score=34.42 Aligned_cols=94 Identities=6% Similarity=-0.095 Sum_probs=70.3
Q ss_pred cHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCC--chhHHHHHHHHHhcCCHHHHHHHHhcCC-----CCcHHhHH----
Q 037592 85 SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKD--VIIESALVDLYAKCGCVDFAHQIFLQMP-----VRNLITWN---- 153 (337)
Q Consensus 85 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~---- 153 (337)
+...+...+.+.|+++.|.+.+.++......+. ...+-.+++.+...+++..+...+.++. .++....+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 677899999999999999999999998765433 4666678889999999999998888765 22322211
Q ss_pred HHHHHHHhCCCHhHHHHHHHHHHhc
Q 037592 154 SMISGFAQNGRGEEALRIFDDMTEG 178 (337)
Q Consensus 154 ~l~~~~~~~~~~~~a~~~~~~m~~~ 178 (337)
.-+..+...+++..|...|-+....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1223345689999999998887654
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=88.69 E-value=9.7 Score=31.85 Aligned_cols=277 Identities=10% Similarity=0.037 Sum_probs=163.8
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHcccC--------ChhhHHHHHHHHHcC-CChhHHHHHHHHHhh---cCcccHH--
Q 037592 22 VVESSLVDMYGKCGLVDESHRVFDKMLKK--------NSVSSSALLQGYCQT-GDFESVIRIFREMEE---IDLFSFG-- 87 (337)
Q Consensus 22 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~---~~~~~~~-- 87 (337)
.....|...|.+.|+.++..+++....+- ....-..++..+... +..+.-.++..+..+ ....+|-
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567889999999999999999887221 234466777777664 444555555555554 2223441
Q ss_pred ----HHHHHHHhhchhhhhHHHHHHHHHhhCCCC-----chhHHHHHHHHHhcCCHHHHHHHHhcCC------CCcHHhH
Q 037592 88 ----IVLRACAGLAALRLGKEVHCQYIRRSGCKD-----VIIESALVDLYAKCGCVDFAHQIFLQMP------VRNLITW 152 (337)
Q Consensus 88 ----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~~~~~ 152 (337)
.++..|...|++.+|..++.++.+.-...| ..++-.-+..|...+++.++...+.+.. .+++...
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 577889999999999999999988644433 2344555677888999999888886654 1333221
Q ss_pred ----HHHHHHHH-hCCCHhHHHHHHHHHHhc-C-C-CC---CHhHHHHHHHHHhhcCchhhHHHHHH-HHHHhcCCCCCH
Q 037592 153 ----NSMISGFA-QNGRGEEALRIFDDMTEG-G-T-KP---DHVSFIGVLSACSHMGLIDRGRKHFA-SMTKEYRIKPKI 220 (337)
Q Consensus 153 ----~~l~~~~~-~~~~~~~a~~~~~~m~~~-~-~-~p---~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~ 220 (337)
..-...+. ..++|..|...|-+..+. . . .| +...|..+ .+... ++..+-..++. ...... ..|..
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL-~aLl~-~~r~el~~~l~~~~~~~~-~~pei 256 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLL-CKIML-GQSDDVNQLVSGKLAITY-SGRDI 256 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-HHHHT-TCGGGHHHHHHSHHHHTT-CSHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHH-HHHHc-CCHHHHHHHhcccccccc-CCccH
Confidence 12233456 789999999888776432 1 0 11 11223222 22222 22222222222 211211 24555
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhc--CCCchhHHHHHHHHHhcCCChhHHHHHHHHHHh------cCCCccchHHHH
Q 037592 221 EHYNCMVDLLGRAGLLEEAETLIENAD--CRHDSSLWEVLLGACTTFRNAHVAERVAKKIME------LKPDCHLSYVLL 292 (337)
Q Consensus 221 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------~~p~~~~~~~~l 292 (337)
..+..++.+| ..+++.+...+++... ...|.... .....+++.+.+ ..|-....+..+
T Consensus 257 ~~l~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~-------------~h~~~L~~~Ir~~~L~~i~~pYsrIsl~~i 322 (394)
T 3txn_A 257 DAMKSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQ-------------AHLGTLYDTMLEQNLCRIIEPYSRVQVAHV 322 (394)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHH-------------HHHHHHHHHHHHHHHHHHHTTCSEEEHHHH
T ss_pred HHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHH-------------HHHHHHHHHHHHHHHHHHhHhhceeeHHHH
Confidence 5566666654 5668877777777643 22333211 111122222222 557667778887
Q ss_pred HHHHHHcCChhhHHHHHHHHHHhCC
Q 037592 293 DNVYRAVGRWNDAFKIRTLMKYSGV 317 (337)
Q Consensus 293 ~~~~~~~g~~~~A~~~~~~m~~~~~ 317 (337)
...+.- ..+++...+-+|...|.
T Consensus 323 A~~l~l--s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 323 AESIQL--PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp HHHHTC--CHHHHHHHHHHHHHTTS
T ss_pred HHHHCc--CHHHHHHHHHHHHHCCC
Confidence 776643 67899999999988765
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=88.64 E-value=1.9 Score=33.72 Aligned_cols=58 Identities=17% Similarity=0.148 Sum_probs=39.5
Q ss_pred HHHHhcCChHHHHHHHHH-hcCCC-chhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCc
Q 037592 228 DLLGRAGLLEEAETLIEN-ADCRH-DSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDC 285 (337)
Q Consensus 228 ~~~~~~g~~~~A~~~~~~-~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 285 (337)
..+.+.|++++|+..... ++..| |...-..++..+|-.|+++.|.+-++...+++|..
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 345667778887777654 55444 34444556677778888888888888777777773
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=88.41 E-value=14 Score=33.18 Aligned_cols=299 Identities=11% Similarity=-0.014 Sum_probs=142.3
Q ss_pred hhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHcccC-------------ChhhHHH------------
Q 037592 3 KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKK-------------NSVSSSA------------ 57 (337)
Q Consensus 3 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------------~~~~~~~------------ 57 (337)
+.+-.+|+...+.|.-.....+. -+......|+...|..+...+... ++.....
T Consensus 137 ~~c~~l~~~~~~~g~lt~~~~~~-R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~~~~~~~~~~ 215 (618)
T 1qsa_A 137 NACDKLFSVWRASGKQDPLAYLE-RIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTGATDFTR 215 (618)
T ss_dssp THHHHHHHHHHHTTCSCHHHHHH-HHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHH-HHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHhccCCChhhH
Confidence 34556777777666333333333 335566777777777776665111 1111111
Q ss_pred -----HHHHHHcCCChhHHHHHHHHHhh---cCccc----HHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHH
Q 037592 58 -----LLQGYCQTGDFESVIRIFREMEE---IDLFS----FGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALV 125 (337)
Q Consensus 58 -----l~~~~~~~g~~~~A~~~~~~~~~---~~~~~----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 125 (337)
.+.-+.+ .+.+.|...+..... .+... ...+.......+...++...+...... ..+.....-.+
T Consensus 216 ~~~~~~~~rlar-~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~ 292 (618)
T 1qsa_A 216 QMAAVAFASVAR-QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRV 292 (618)
T ss_dssp HHHHHHHHHHHH-HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHh-cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHH
Confidence 1111222 255666666666643 11111 112222222333244455555543332 23333344445
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCc---HHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhh
Q 037592 126 DLYAKCGCVDFAHQIFLQMPVRN---LITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDR 202 (337)
Q Consensus 126 ~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 202 (337)
....+.|+++.|...|+.|.... ....-=+..++...|+.++|..+|+.+.+. . ..|..+. ..+.|..-.
T Consensus 293 r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~----~-~fYg~lA--a~~Lg~~~~ 365 (618)
T 1qsa_A 293 RMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ----R-GFYPMVA--AQRIGEEYE 365 (618)
T ss_dssp HHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----C-SHHHHHH--HHHTTCCCC
T ss_pred HHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC----C-ChHHHHH--HHHcCCCCC
Confidence 55566788888888888887421 222223455667778888888888887641 1 2233222 222332100
Q ss_pred HHHHHHHHHHhcCCCC---CH---HHHHHHHHHHHhcCChHHHHHHHHHhcCCCchhHHHHHHHHHhcCCChhHHHHHHH
Q 037592 203 GRKHFASMTKEYRIKP---KI---EHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAK 276 (337)
Q Consensus 203 a~~~~~~~~~~~~~~~---~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 276 (337)
. . . . ...+ .. ..-..-+..+...|....|...+..+....+......+.......|.++.++....
T Consensus 366 ~-~----~-~--~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~v~~~~ 437 (618)
T 1qsa_A 366 L-K----I-D--KAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATI 437 (618)
T ss_dssp C-C----C-C--CCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred C-C----C-C--CCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 0 0 0 0 0000 00 01112244566778888888877765333333333444444566777777665554
Q ss_pred HHHhcCC---CccchHHHHHHHHHHcCChhhHHHHHHHHHHhCCccC
Q 037592 277 KIMELKP---DCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKM 320 (337)
Q Consensus 277 ~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 320 (337)
.....+. ..+..|..++..+.+...++.++-.---..++++.|.
T Consensus 438 ~~~~~~~~~~~~P~~y~~~i~~~a~~~gv~~~ll~Ai~~~ES~f~p~ 484 (618)
T 1qsa_A 438 AGKLWDHLEERFPLAYNDLFKRYTSGKEIPQSYAMAIARQESAWNPK 484 (618)
T ss_dssp HTTCTTCHHHHSCCTTHHHHHHHHTTSSSCHHHHHHHHHHHHTTCTT
T ss_pred HHHhhcchhhhCCcchHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCC
Confidence 3322110 0122355556555555555554433233345666553
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=88.34 E-value=4.6 Score=27.74 Aligned_cols=75 Identities=12% Similarity=0.174 Sum_probs=53.3
Q ss_pred CHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 037592 164 RGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLI 243 (337)
Q Consensus 164 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 243 (337)
|.-+..+-++.+....+.|+.......+.+|.+.+++..|.++++-+..+. .+...+|..++ ++-.-++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~--~~~~~iY~y~l---------qElkPtl 136 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVI---------QELRPTL 136 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHH---------HHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--CCchhhHHHHH---------HHHhhHH
Confidence 444566667777777888999999999999999999999999999884443 33344666655 3445556
Q ss_pred HHhcCC
Q 037592 244 ENADCR 249 (337)
Q Consensus 244 ~~~~~~ 249 (337)
+++|+.
T Consensus 137 ~ELGI~ 142 (152)
T 2y69_E 137 NELGIS 142 (152)
T ss_dssp HHHTCC
T ss_pred HHhCCC
Confidence 666643
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.28 E-value=6.1 Score=29.36 Aligned_cols=29 Identities=14% Similarity=-0.065 Sum_probs=16.8
Q ss_pred hhHHHHHHHHHhcCCChhHHHHHHHHHHh
Q 037592 252 SSLWEVLLGACTTFRNAHVAERVAKKIME 280 (337)
Q Consensus 252 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 280 (337)
+..|......+...|++.+|..+|+..++
T Consensus 115 AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~ 143 (202)
T 3esl_A 115 SLFYEEFSKLLENAQFFLEAKVLLELGAE 143 (202)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455555555566666666666666655
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=88.23 E-value=3.7 Score=26.45 Aligned_cols=86 Identities=15% Similarity=0.074 Sum_probs=57.3
Q ss_pred chhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHH
Q 037592 97 AALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176 (337)
Q Consensus 97 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 176 (337)
...++|..+-+.+...+. ...+--+-+..+...|++++|..+.+...-||...|.+|.. .+.|-.+++..-+.++-
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 456677777666665533 22222223445678899999999988888888888877765 57788888888777776
Q ss_pred hcCCCCCHhHH
Q 037592 177 EGGTKPDHVSF 187 (337)
Q Consensus 177 ~~~~~p~~~~~ 187 (337)
.+| .|....|
T Consensus 96 ~sg-~p~~q~F 105 (115)
T 2uwj_G 96 GSS-DPALADF 105 (115)
T ss_dssp TCS-SHHHHHH
T ss_pred hCC-CHHHHHH
Confidence 654 3344343
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=87.94 E-value=3.9 Score=26.39 Aligned_cols=79 Identities=9% Similarity=0.019 Sum_probs=51.7
Q ss_pred chhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHH
Q 037592 97 AALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMT 176 (337)
Q Consensus 97 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 176 (337)
...++|..+-+.+...+. ...+--+-+..+...|++++|..+.+...-||...|.+|.. .+.|-.+++..-+.++-
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 446677776666655432 22222223345677888888888888888888888877765 45677777777776666
Q ss_pred hcC
Q 037592 177 EGG 179 (337)
Q Consensus 177 ~~~ 179 (337)
.+|
T Consensus 97 ~sg 99 (116)
T 2p58_C 97 RSQ 99 (116)
T ss_dssp TCC
T ss_pred hCC
Confidence 554
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=87.29 E-value=7.1 Score=28.71 Aligned_cols=49 Identities=6% Similarity=0.035 Sum_probs=20.8
Q ss_pred CCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCC
Q 037592 116 KDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGR 164 (337)
Q Consensus 116 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~ 164 (337)
++..+-...+.++.+.|+.+....+...+..++...-...+.++...++
T Consensus 88 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 136 (201)
T 3ltj_A 88 EDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGD 136 (201)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 3444444444445554443333333333334444444444444444443
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.70 E-value=15 Score=31.88 Aligned_cols=181 Identities=10% Similarity=0.001 Sum_probs=93.3
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHhcCCCCcH-------HhH-HHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHh----
Q 037592 118 VIIESALVDLYAKCGCVDFAHQIFLQMPVRNL-------ITW-NSMISGFAQNGRGEEALRIFDDMTEGGTKPDHV---- 185 (337)
Q Consensus 118 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------~~~-~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---- 185 (337)
..++|.+++.|...+.++.|..+..+..-|.. ..| ..+...+.-.+++.+|.+.+......-+ ++..
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap-~~~~a~gf 309 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAP-HNSKSLGF 309 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCS-CSSSCSHH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-cchhhhhH
Confidence 46777888889999999999999988874421 122 2345667778899999988888776422 2221
Q ss_pred ---HHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhcCCCchhHHHHHHHHH
Q 037592 186 ---SFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGAC 262 (337)
Q Consensus 186 ---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~ 262 (337)
.+..++-+-.-.|+...- .+| ...+.......|..|..++ +.|++++-...+++-. ..+
T Consensus 310 r~~a~K~lI~V~LLlG~iP~r-~lf----~q~~l~~~L~pY~~Lv~Av-r~GdL~~F~~~L~~h~------------~~F 371 (523)
T 4b4t_S 310 LQQSNKLHCCIQLLMGDIPEL-SFF----HQSNMQKSLLPYYHLTKAV-KLGDLKKFTSTITKYK------------QLL 371 (523)
T ss_dssp HHHHHHHHHHHHHHHTCCCCH-HHH----TTTSCHHHHHHHHHHHHHH-HHTCHHHHHHHHHHTH------------HHH
T ss_pred HHHHHHHHHhHHhhcCCCCCh-HHh----hchhHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHhc------------cee
Confidence 111111111113444331 111 1111111234466666665 5677766665555421 112
Q ss_pred hcCCChhHHHHHHHH----HHh-cCCC-ccchHHHHHHHHHHcCChhhHHHHHHHHHHhCCc
Q 037592 263 TTFRNAHVAERVAKK----IME-LKPD-CHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVK 318 (337)
Q Consensus 263 ~~~g~~~~a~~~~~~----~~~-~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 318 (337)
.+.|.+--..++-.- ... +... +......+.... .....++|..+.-.|...|.-
T Consensus 372 ~~Dgty~LI~rLr~~vir~~irkis~~YsrIsL~dIa~kL-~L~s~eeaE~iVAkmI~dG~I 432 (523)
T 4b4t_S 372 LKDDTYQLCVRLRSNVIKTGIRIISLTYKKISLRDICLKL-NLDSEQTVEYMVSRAIRDGVI 432 (523)
T ss_dssp HHTTCTHHHHHHHHHHHHHHHHHSCCCSSEECHHHHHHHH-HHHHSSCHHHHHHHHHHHTSS
T ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHh-CCCCHHHHHHHHHHHHHcCCc
Confidence 333343333322222 222 2221 122333332222 223356799999999988764
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=85.93 E-value=11 Score=29.51 Aligned_cols=53 Identities=11% Similarity=0.127 Sum_probs=31.5
Q ss_pred HHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHH
Q 037592 158 GFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMT 211 (337)
Q Consensus 158 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 211 (337)
...+.|++++|+.....-++.. +-|...-..++..+|-.|++++|.+-++...
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a 58 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSI 58 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3455666777766666665542 2244444455566666677777776666664
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=85.70 E-value=9.2 Score=36.35 Aligned_cols=104 Identities=6% Similarity=-0.204 Sum_probs=63.4
Q ss_pred HHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhc--CCC-----------------
Q 037592 190 VLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENAD--CRH----------------- 250 (337)
Q Consensus 190 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~----------------- 250 (337)
++..|...|..+-|.++.. -++.++..-..++.+|...|++++|...|++.. ...
T Consensus 816 l~~~L~~~~~~~~a~eL~~------~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIG------WLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGG------GCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHh------hcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCc
Confidence 5556666777665544322 234455555567888999999999999998741 110
Q ss_pred ------chhHHHHHHHHHhcCCChhHHHHHHHHHHh-cCCCccc----hHHHHHHHHHHc
Q 037592 251 ------DSSLWEVLLGACTTFRNAHVAERVAKKIME-LKPDCHL----SYVLLDNVYRAV 299 (337)
Q Consensus 251 ------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~p~~~~----~~~~l~~~~~~~ 299 (337)
....|..++..+-+.+-++.+.++.+.+++ ..++++. .|..+..+.+..
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~ 949 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAA 949 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhC
Confidence 011355666667777777777777777776 4444432 444555544443
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=85.44 E-value=4.7 Score=27.72 Aligned_cols=71 Identities=15% Similarity=0.101 Sum_probs=45.9
Q ss_pred HhHHHHHHHHHhc-C-ChHHHHHHHHHc----ccCChhhHHHHHHHHHcCCChhHHHHHHHHHhh---cCcccHHHHHHH
Q 037592 22 VVESSLVDMYGKC-G-LVDESHRVFDKM----LKKNSVSSSALLQGYCQTGDFESVIRIFREMEE---IDLFSFGIVLRA 92 (337)
Q Consensus 22 ~~~~~l~~~~~~~-~-~~~~A~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~ 92 (337)
.-+..--..|... . |.=+..+-++.+ .-|++....+.+.+|-+.+++..|+++|+-.+. +...+|..++.-
T Consensus 52 EeFdaRy~~~F~~~~iD~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lqE 131 (152)
T 2y69_E 52 EEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQE 131 (152)
T ss_dssp HHHHHHHHHHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHHH
Confidence 3344333344433 3 344555555555 456777888888888888888888888888776 444457776654
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=84.15 E-value=10 Score=27.77 Aligned_cols=155 Identities=13% Similarity=0.100 Sum_probs=97.0
Q ss_pred CCchHhHHHHHHHHHhcCChHHHHHHHHHcccCChhhHHHHHHHHHcCCChhHHHHHHHHHhhcCcccHHHHHHHHHhhc
Q 037592 18 CGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLA 97 (337)
Q Consensus 18 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~ 97 (337)
.+|..+-...+..+.+.+..+....+.+.+..++...-...+.++...|..+..-.+.+.+..++...-...+.++...+
T Consensus 25 ~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 104 (201)
T 3ltj_A 25 DDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIG 104 (201)
T ss_dssp CSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 46677777777888888876655666666666777776677777777776544444444333377777777777777777
Q ss_pred hhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHh
Q 037592 98 ALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTE 177 (337)
Q Consensus 98 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 177 (337)
+.+ +...+..++. .++..+-...+.++.+.|..+....+..-+..++...-...+.++...|. .++...+..+.+
T Consensus 105 ~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~~~~~~L~~~l~ 179 (201)
T 3ltj_A 105 DER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLAE 179 (201)
T ss_dssp CGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred cHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 653 4444444443 36677777777888887775444444444456666666666666666554 345555555544
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 337 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-07 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.1 bits (118), Expect = 2e-07
Identities = 30/208 (14%), Positives = 69/208 (33%), Gaps = 10/208 (4%)
Query: 106 HCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIF---LQMPVRNLITWNSMISGFAQN 162
+ + S L ++ G + A F + + L + ++ + +
Sbjct: 157 CYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEA 216
Query: 163 GRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKI-E 221
+ A+ + V + GLID + + ++P +
Sbjct: 217 RIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTY---RRAIELQPHFPD 272
Query: 222 HYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHV--AERVAKKIM 279
Y + + L G + EAE A + + A ++ A R+ +K +
Sbjct: 273 AYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKAL 332
Query: 280 ELKPDCHLSYVLLDNVYRAVGRWNDAFK 307
E+ P+ ++ L +V + G+ +A
Sbjct: 333 EVFPEFAAAHSNLASVLQQQGKLQEALM 360
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 337 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.94 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.91 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.8 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.78 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.56 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.48 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.48 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.47 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.46 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.45 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.44 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.41 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.41 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.34 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.17 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.14 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.06 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.01 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.97 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.96 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.92 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.87 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.87 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.86 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.83 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.79 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.79 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.79 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.65 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.62 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.61 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.6 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.57 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.57 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.5 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.49 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.49 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.47 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.45 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.44 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.42 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.4 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.37 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.33 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.23 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.14 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.08 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 98.04 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.03 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.97 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.93 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.86 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.83 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.65 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.77 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.73 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.51 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 96.06 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 96.01 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 95.75 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 95.5 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.21 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 90.86 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 90.3 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=4.7e-24 Score=179.27 Aligned_cols=323 Identities=15% Similarity=0.092 Sum_probs=259.8
Q ss_pred CchhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHcc--cC-ChhhHHHHHHHHHcCCChhHHHHHHHH
Q 037592 1 RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKML--KK-NSVSSSALLQGYCQTGDFESVIRIFRE 77 (337)
Q Consensus 1 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 77 (337)
++++|.+.++.+++.. +-+..++..+..+|.+.|++++|+..|++++ .| +..+|..++.+|.+.|++++|++.+..
T Consensus 14 ~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~~~~~ 92 (388)
T d1w3ba_ 14 DFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRH 92 (388)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccccccccccc
Confidence 5789999999999874 3467788999999999999999999999984 33 577899999999999999999999999
Q ss_pred Hhh--cCcc-c----------------------------------HHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchh
Q 037592 78 MEE--IDLF-S----------------------------------FGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120 (337)
Q Consensus 78 ~~~--~~~~-~----------------------------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 120 (337)
..+ +... . ...........+....+...+.+.....+ .+...
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 171 (388)
T d1w3ba_ 93 ALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQP-NFAVA 171 (388)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCT-TCHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccCc-chhHH
Confidence 877 2111 1 11122223333444455555555555543 45677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhc
Q 037592 121 ESALVDLYAKCGCVDFAHQIFLQMP---VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHM 197 (337)
Q Consensus 121 ~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 197 (337)
+..+...+...|++++|...+++.. +.+..+|..+...+...|++++|...+++....+. .+...+..+...+.+.
T Consensus 172 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 250 (388)
T d1w3ba_ 172 WSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAVVHGNLACVYYEQ 250 (388)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHT
T ss_pred HHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhh-hHHHHHHHHHHHHHHC
Confidence 7888899999999999999998776 34667899999999999999999999999988643 3566777788899999
Q ss_pred CchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh--cCCCchhHHHHHHHHHhcCCChhHHHHHH
Q 037592 198 GLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA--DCRHDSSLWEVLLGACTTFRNAHVAERVA 275 (337)
Q Consensus 198 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 275 (337)
|++++|...++++++.. +.+..++..+...+...|++++|.+.++.. ..+.+...+..+...+...|++++|+..+
T Consensus 251 ~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 328 (388)
T d1w3ba_ 251 GLIDLAIDTYRRAIELQ--PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLY 328 (388)
T ss_dssp TCHHHHHHHHHHHHHTC--SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHH
Confidence 99999999999997542 455788999999999999999999999874 24456677888889999999999999999
Q ss_pred HHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCCccCCCCcceeccc
Q 037592 276 KKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWIEANS 330 (337)
Q Consensus 276 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~ 330 (337)
+++++..|+++.++..++.+|.+.|++++|...|++..+. .|+....|..++.
T Consensus 329 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~lg~ 381 (388)
T d1w3ba_ 329 RKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGN 381 (388)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999998763 4544444554443
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=3.4e-21 Score=161.61 Aligned_cols=296 Identities=13% Similarity=0.098 Sum_probs=243.6
Q ss_pred CchhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHcccC---Chh------------------------
Q 037592 1 RLKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKK---NSV------------------------ 53 (337)
Q Consensus 1 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~------------------------ 53 (337)
++++|...++.+++.+ +-+..++..+..+|.+.|++++|+..+...... +..
T Consensus 48 ~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (388)
T d1w3ba_ 48 RLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVS 126 (388)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcccccccccccccccccccccccccccccccccccccccccccccc
Confidence 5789999999999885 446778999999999999999999999887322 111
Q ss_pred ----------hHHHHHHHHHcCCChhHHHHHHHHHhh--cC-cccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchh
Q 037592 54 ----------SSSALLQGYCQTGDFESVIRIFREMEE--ID-LFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVII 120 (337)
Q Consensus 54 ----------~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 120 (337)
............+....+...+.+... |+ ...+..+...+...|++++|...+++.++..+ .+..+
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~ 205 (388)
T d1w3ba_ 127 ALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDA 205 (388)
T ss_dssp HHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHH
T ss_pred ccccccccccccccccccccccchhhhhHHHHHHhhccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCc-ccHHH
Confidence 122233334445555666666666555 43 34677778888999999999999999998765 56788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhc
Q 037592 121 ESALVDLYAKCGCVDFAHQIFLQMP---VRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHM 197 (337)
Q Consensus 121 ~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 197 (337)
+..+...+...|++++|...+++.. ..+...+..+...+.+.|++++|+..|++..+... -+..++..+...+...
T Consensus 206 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~ 284 (388)
T d1w3ba_ 206 YINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEK 284 (388)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHc
Confidence 8999999999999999999998876 45667888899999999999999999999988532 2456788888999999
Q ss_pred CchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cCCCc-hhHHHHHHHHHhcCCChhHHHHHH
Q 037592 198 GLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DCRHD-SSLWEVLLGACTTFRNAHVAERVA 275 (337)
Q Consensus 198 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~ 275 (337)
|++++|.+.++.+... .+.+...+..+...+...|++++|.+.|++. ...|+ ..++..+..++.+.|++++|+..|
T Consensus 285 ~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 362 (388)
T d1w3ba_ 285 GSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHY 362 (388)
T ss_dssp SCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCHHHHHHHHHhhhcc--CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999998654 3667888899999999999999999999984 45554 567888889999999999999999
Q ss_pred HHHHhcCCCccchHHHHHHHHHHcCC
Q 037592 276 KKIMELKPDCHLSYVLLDNVYRAVGR 301 (337)
Q Consensus 276 ~~~~~~~p~~~~~~~~l~~~~~~~g~ 301 (337)
+++++++|+++.+|..++.+|.+.|+
T Consensus 363 ~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 363 KEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999998875
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=1.4e-17 Score=136.42 Aligned_cols=237 Identities=13% Similarity=0.030 Sum_probs=135.4
Q ss_pred HHHHHHcCCChhHHHHHHHHHhh--cC-cccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCH
Q 037592 58 LLQGYCQTGDFESVIRIFREMEE--ID-LFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCV 134 (337)
Q Consensus 58 l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 134 (337)
....+.+.|++++|+..|+++.+ |+ ..+|..+..++...|++++|...+.++++..+ .+...+..++.+|...|++
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~ 103 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFTNESLQ 103 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccc-ccccccccccccccccccc
Confidence 44455566666666666666555 32 23455555555555555555555555555443 3344555555555555555
Q ss_pred HHHHHHHhcCC--CCcHH-hHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHH
Q 037592 135 DFAHQIFLQMP--VRNLI-TWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMT 211 (337)
Q Consensus 135 ~~A~~~~~~~~--~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 211 (337)
++|.+.+++.. .|+.. .+....... ...+.......+..+...+.+.+|...+..++
T Consensus 104 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al 163 (323)
T d1fcha_ 104 RQACEILRDWLRYTPAYAHLVTPAEEGA--------------------GGAGLGPSKRILGSLLSDSLFLEVKELFLAAV 163 (323)
T ss_dssp HHHHHHHHHHHHTSTTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhHHHhccchHHHHHhhhhhh--------------------hhcccccchhhHHHHHHhhHHHHHHHHHHHHH
Confidence 55555554433 11100 000000000 00000000111122233455667777777765
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cCC-CchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchH
Q 037592 212 KEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DCR-HDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSY 289 (337)
Q Consensus 212 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 289 (337)
+......+..++..+...+...|++++|...|++. ... .+...|..+..++...|++++|++.|+++++.+|+++.+|
T Consensus 164 ~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 243 (323)
T d1fcha_ 164 RLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSR 243 (323)
T ss_dssp HHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHH
Confidence 54333445667777777788888888888888763 222 3455677777778888888888888888888888877788
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHHh
Q 037592 290 VLLDNVYRAVGRWNDAFKIRTLMKYS 315 (337)
Q Consensus 290 ~~l~~~~~~~g~~~~A~~~~~~m~~~ 315 (337)
..++.+|.+.|++++|+..|++..+.
T Consensus 244 ~~lg~~~~~~g~~~~A~~~~~~al~l 269 (323)
T d1fcha_ 244 YNLGISCINLGAHREAVEHFLEALNM 269 (323)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 88888888888888888888777663
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=5e-17 Score=133.00 Aligned_cols=265 Identities=11% Similarity=-0.015 Sum_probs=192.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHccc--C-ChhhHHHHHHHHHcCCChhHHHHHHHHHhh--cC-cccHHHHHHHHHhhch
Q 037592 25 SSLVDMYGKCGLVDESHRVFDKMLK--K-NSVSSSALLQGYCQTGDFESVIRIFREMEE--ID-LFSFGIVLRACAGLAA 98 (337)
Q Consensus 25 ~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~ 98 (337)
-.....+.+.|++++|+..|+++++ | +..+|..++.++...|++++|+..|++..+ |+ ...+..+..++...|+
T Consensus 23 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 23 FEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccccccccccccccccccc
Confidence 3467788999999999999999843 3 577899999999999999999999999988 44 4567788889999999
Q ss_pred hhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhc
Q 037592 99 LRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEG 178 (337)
Q Consensus 99 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 178 (337)
+++|.+.++++....+. ............. ..+.......+..+...+.+.+|...|.+..+.
T Consensus 103 ~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~ 165 (323)
T d1fcha_ 103 QRQACEILRDWLRYTPA-YAHLVTPAEEGAG----------------GAGLGPSKRILGSLLSDSLFLEVKELFLAAVRL 165 (323)
T ss_dssp HHHHHHHHHHHHHTSTT-TGGGCC-------------------------------CTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhHHHhccc-hHHHHHhhhhhhh----------------hcccccchhhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 99999999999886542 1111111100000 000111111122334446677888888887764
Q ss_pred CC-CCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cCCC-chhHH
Q 037592 179 GT-KPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DCRH-DSSLW 255 (337)
Q Consensus 179 ~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~ 255 (337)
.. .++...+..+...+...|++++|...++.++... +-+..+|..++.+|...|++++|.+.|++. ...| +...|
T Consensus 166 ~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 243 (323)
T d1fcha_ 166 DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSR 243 (323)
T ss_dssp STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hhcccccccchhhHHHHHHHHHHhhhhcccccccccc--cccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHH
Confidence 32 2345567777788889999999999999987643 445778889999999999999999999874 3333 46678
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHhcCCCccc-----------hHHHHHHHHHHcCChhhHHHH
Q 037592 256 EVLLGACTTFRNAHVAERVAKKIMELKPDCHL-----------SYVLLDNVYRAVGRWNDAFKI 308 (337)
Q Consensus 256 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----------~~~~l~~~~~~~g~~~~A~~~ 308 (337)
..+..+|.+.|++++|+..|++++++.|++.. .|..+..++...|+.+.+...
T Consensus 244 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~ 307 (323)
T d1fcha_ 244 YNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 307 (323)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88889999999999999999999997776543 345566777777877766544
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.56 E-value=2.3e-12 Score=105.85 Aligned_cols=258 Identities=15% Similarity=0.070 Sum_probs=112.3
Q ss_pred HHHHHhcCChHHHHHHHHHccc--CC------hhhHHHHHHHHHcCCChhHHHHHHHHHhh-----cCc----ccHHHHH
Q 037592 28 VDMYGKCGLVDESHRVFDKMLK--KN------SVSSSALLQGYCQTGDFESVIRIFREMEE-----IDL----FSFGIVL 90 (337)
Q Consensus 28 ~~~~~~~~~~~~A~~~~~~~~~--~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~----~~~~~l~ 90 (337)
...+...|++++|++.+++... |+ ...+..+..++...|++++|+..|++..+ ++. .++..+.
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 98 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 98 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 4455566666666666665521 11 12344555566666666666666665544 111 1223333
Q ss_pred HHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCC----cHHhHHHHHHHHHhCCCHh
Q 037592 91 RACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVR----NLITWNSMISGFAQNGRGE 166 (337)
Q Consensus 91 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~ 166 (337)
..+...|++..+...+.+.+..... ...+ ....+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~a~~~~~~al~~~~~----------------------------~~~~~~~~~~~~~~~la~~~~~~~~~~ 150 (366)
T d1hz4a_ 99 EILFAQGFLQTAWETQEKAFQLINE----------------------------QHLEQLPMHEFLVRIRAQLLWAWARLD 150 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH----------------------------TTCTTSTHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHh----------------------------cccchhhHHHHHHHHHHHHHHHhcchh
Confidence 3444444555555444444332110 0000 0112333444455555555
Q ss_pred HHHHHHHHHHhcCCC----CCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCC-----HHHHHHHHHHHHhcCChH
Q 037592 167 EALRIFDDMTEGGTK----PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPK-----IEHYNCMVDLLGRAGLLE 237 (337)
Q Consensus 167 ~a~~~~~~m~~~~~~----p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~ 237 (337)
.+...+......... ....++......+...+....+...+............ ...+..+...+...|+++
T Consensus 151 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (366)
T d1hz4a_ 151 EAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKA 230 (366)
T ss_dssp HHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred hhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHH
Confidence 555555544432111 11122222333344445555555444443221111110 122333344445555555
Q ss_pred HHHHHHHHhc-CC-----CchhHHHHHHHHHhcCCChhHHHHHHHHHHh------cCCCccchHHHHHHHHHHcCChhhH
Q 037592 238 EAETLIENAD-CR-----HDSSLWEVLLGACTTFRNAHVAERVAKKIME------LKPDCHLSYVLLDNVYRAVGRWNDA 305 (337)
Q Consensus 238 ~A~~~~~~~~-~~-----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------~~p~~~~~~~~l~~~~~~~g~~~~A 305 (337)
+|...+++.- .. .....+..+..++...|++++|...++++.. ..|....++..++.+|...|++++|
T Consensus 231 ~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 310 (366)
T d1hz4a_ 231 AAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDA 310 (366)
T ss_dssp HHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHH
Confidence 5555555421 10 1112233344445555555555555555542 2233334455555555555555555
Q ss_pred HHHHHHHH
Q 037592 306 FKIRTLMK 313 (337)
Q Consensus 306 ~~~~~~m~ 313 (337)
.+.+++..
T Consensus 311 ~~~l~~Al 318 (366)
T d1hz4a_ 311 QRVLLDAL 318 (366)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.48 E-value=9.2e-12 Score=102.12 Aligned_cols=245 Identities=11% Similarity=0.027 Sum_probs=146.2
Q ss_pred CchhhHHHHHHHHhcCCCCc----hHhHHHHHHHHHhcCChHHHHHHHHHcccC-----C----hhhHHHHHHHHHcCCC
Q 037592 1 RLKQGKEVHAKVITLGLCGN----VVVESSLVDMYGKCGLVDESHRVFDKMLKK-----N----SVSSSALLQGYCQTGD 67 (337)
Q Consensus 1 ~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~----~~~~~~l~~~~~~~g~ 67 (337)
++++|.++++..++.....+ ..++..+...+...|++++|...|++.... + ...+..+...+...|+
T Consensus 27 ~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (366)
T d1hz4a_ 27 NPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGF 106 (366)
T ss_dssp CHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHH
Confidence 57899999999988641111 246777889999999999999999987321 1 3346677788999999
Q ss_pred hhHHHHHHHHHhh-----cC--c----ccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCC----CchhHHHHHHHHHhcC
Q 037592 68 FESVIRIFREMEE-----ID--L----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCK----DVIIESALVDLYAKCG 132 (337)
Q Consensus 68 ~~~A~~~~~~~~~-----~~--~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g 132 (337)
+..+...+.+... +. . ..+..+...+...|+++.+...+.......... ....+..+...+...+
T Consensus 107 ~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (366)
T d1hz4a_ 107 LQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARG 186 (366)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhh
Confidence 9999999998765 11 1 134445566777778888887777776654321 1233344455566666
Q ss_pred CHHHHHHHHhcCC-------CC---cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCC---HhHHHHHHHHHhhcCc
Q 037592 133 CVDFAHQIFLQMP-------VR---NLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPD---HVSFIGVLSACSHMGL 199 (337)
Q Consensus 133 ~~~~A~~~~~~~~-------~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~~~ 199 (337)
+...+...+.+.. .. ....+..+...+...|++++|...+++........+ ...+..+...+...|+
T Consensus 187 ~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 266 (366)
T d1hz4a_ 187 DLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGE 266 (366)
T ss_dssp CHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCC
Confidence 6666655554332 11 122344455556666666666666666544322211 1223334555566666
Q ss_pred hhhHHHHHHHHHHh---cCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHH
Q 037592 200 IDRGRKHFASMTKE---YRIKPK-IEHYNCMVDLLGRAGLLEEAETLIEN 245 (337)
Q Consensus 200 ~~~a~~~~~~~~~~---~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 245 (337)
+++|...++.++.. .+..|+ ..++..+..+|...|++++|.+.+++
T Consensus 267 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~ 316 (366)
T d1hz4a_ 267 FEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLD 316 (366)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666666655321 122222 23444455555555665555555543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=1e-11 Score=100.37 Aligned_cols=200 Identities=12% Similarity=0.074 Sum_probs=94.2
Q ss_pred HHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcC-CHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHH
Q 037592 93 CAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCG-CVDFAHQIFLQMP---VRNLITWNSMISGFAQNGRGEEA 168 (337)
Q Consensus 93 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a 168 (337)
+.+.+.+++|+.+++++++.++ .+...|+....++...| ++++|+..+++.. +.+..+|..+...+...|++++|
T Consensus 53 ~~~~e~~~~Al~~~~~ai~lnP-~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eA 131 (315)
T d2h6fa1 53 LQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQE 131 (315)
T ss_dssp HHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTH
T ss_pred HHhCCchHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHH
Confidence 3344444444444444444433 33444444444444443 2455555554443 22344555555555555555555
Q ss_pred HHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC------hHHHHHH
Q 037592 169 LRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL------LEEAETL 242 (337)
Q Consensus 169 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~A~~~ 242 (337)
+..++++.+.... +...|..+...+...|++++|++.++.+++.. +.+...|+.+...+.+.+. +++|.+.
T Consensus 132 l~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~--p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~ 208 (315)
T d2h6fa1 132 LEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED--VRNNSVWNQRYFVISNTTGYNDRAVLEREVQY 208 (315)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHH
T ss_pred HHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC--CccHHHHHHHHHHHHHccccchhhhhHHhHHH
Confidence 5555555553221 34455555555555555555555555554432 2334455544444444333 3455555
Q ss_pred HHH-hcCCC-chhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCcc--chHHHHHHHHH
Q 037592 243 IEN-ADCRH-DSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCH--LSYVLLDNVYR 297 (337)
Q Consensus 243 ~~~-~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~--~~~~~l~~~~~ 297 (337)
+.+ +...| +...|..+...+.. ...+++.+.++...++.|+.. ..+..++..|.
T Consensus 209 ~~~al~~~P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~ 266 (315)
T d2h6fa1 209 TLEMIKLVPHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE 266 (315)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHhCCCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHH
Confidence 544 22223 33444444443333 234556666666666555432 23334444443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.47 E-value=4.8e-13 Score=105.28 Aligned_cols=199 Identities=10% Similarity=-0.084 Sum_probs=116.7
Q ss_pred cHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHh
Q 037592 85 SFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP---VRNLITWNSMISGFAQ 161 (337)
Q Consensus 85 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~ 161 (337)
++..+..+|.+.|++++|...|++.++..+ .+..+|+.+..+|.+.|++++|+..|+++. +.+..++..+..+|..
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 117 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY 117 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccCC-CCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHH
Confidence 455556666777777777777777776654 566777777777888888888887777776 2345677777778888
Q ss_pred CCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChH----
Q 037592 162 NGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE---- 237 (337)
Q Consensus 162 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---- 237 (337)
.|++++|...|++..+.... +......+..++.+.+..+.+..+.... ... .+....+. ++..+.......
T Consensus 118 ~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~-~~~~~~~~~~~~~~~~ 192 (259)
T d1xnfa_ 118 GGRDKLAQDDLLAFYQDDPN-DPFRSLWLYLAEQKLDEKQAKEVLKQHF-EKS--DKEQWGWN-IVEFYLGNISEQTLME 192 (259)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCHHHHHHHHHHHH-HHS--CCCSTHHH-HHHHHTTSSCHHHHHH
T ss_pred HhhHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhhhHHHHHHHHHHh-hcc--chhhhhhh-HHHHHHHHHHHHHHHH
Confidence 88888888888887775321 3333333333444555555555444444 221 22221221 222222221211
Q ss_pred HHHHHHHH-hcCCC-chhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchH
Q 037592 238 EAETLIEN-ADCRH-DSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSY 289 (337)
Q Consensus 238 ~A~~~~~~-~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 289 (337)
.+...+.. ....| ...+|..+...+...|++++|.+.|++++..+|++...|
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 246 (259)
T d1xnfa_ 193 RLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH 246 (259)
T ss_dssp HHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH
T ss_pred HHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 11111111 01112 223566677788888999999999998888888864444
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=9.9e-12 Score=100.43 Aligned_cols=187 Identities=9% Similarity=-0.042 Sum_probs=106.5
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHcc--cC-ChhhHHHHHHHHHcCC-ChhHHHHHHHHHhh--c-CcccHHHHHHHHH
Q 037592 22 VVESSLVDMYGKCGLVDESHRVFDKML--KK-NSVSSSALLQGYCQTG-DFESVIRIFREMEE--I-DLFSFGIVLRACA 94 (337)
Q Consensus 22 ~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~ 94 (337)
.+++.+...+.+.+.+++|+.+++.++ .| +...|+....++...| ++++|++.+++..+ | +..+|..+..++.
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~ 123 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE 123 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH
Confidence 445555666666677777777777763 23 4455666666666655 36777777777666 3 2345666666666
Q ss_pred hhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCC------H
Q 037592 95 GLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP---VRNLITWNSMISGFAQNGR------G 165 (337)
Q Consensus 95 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~------~ 165 (337)
..|++++|+..++++++..+ .+..+|..+..++.+.|++++|++.++++. +.+..+|+.+...+...+. +
T Consensus 124 ~l~~~~eAl~~~~kal~~dp-~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~ 202 (315)
T d2h6fa1 124 WLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVL 202 (315)
T ss_dssp HHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHH
T ss_pred hhccHHHHHHHHhhhhhhhh-cchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhhhh
Confidence 66777777777777666654 456666666666666666666666666655 2344555555555444443 3
Q ss_pred hHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHH
Q 037592 166 EEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMT 211 (337)
Q Consensus 166 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 211 (337)
++|+..+.++.+..+ .+...|..+...+.. ...+++.+.++...
T Consensus 203 ~~ai~~~~~al~~~P-~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~ 246 (315)
T d2h6fa1 203 EREVQYTLEMIKLVP-HNESAWNYLKGILQD-RGLSKYPNLLNQLL 246 (315)
T ss_dssp HHHHHHHHHHHHHST-TCHHHHHHHHHHHTT-TCGGGCHHHHHHHH
T ss_pred HHhHHHHHHHHHhCC-CchHHHHHHHHHHHh-cChHHHHHHHHHHH
Confidence 455555555555321 133344433333332 22344555555443
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.45 E-value=7.8e-13 Score=108.22 Aligned_cols=267 Identities=5% Similarity=-0.100 Sum_probs=191.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHcc--cCC-hhhHHHHHHH----------HHcCCChhHHHHHHHHHhh--cC-cccHH
Q 037592 24 ESSLVDMYGKCGLVDESHRVFDKML--KKN-SVSSSALLQG----------YCQTGDFESVIRIFREMEE--ID-LFSFG 87 (337)
Q Consensus 24 ~~~l~~~~~~~~~~~~A~~~~~~~~--~~~-~~~~~~l~~~----------~~~~g~~~~A~~~~~~~~~--~~-~~~~~ 87 (337)
...++....+.+..++|++++++++ .|+ ...|+..-.. +...|++++|+.++++..+ |+ ...|.
T Consensus 32 ~~~~~~~~~~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~ 111 (334)
T d1dcea1 32 TQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWH 111 (334)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHH
Confidence 3444444444445589999999984 443 3445443322 2334557889999999887 43 33566
Q ss_pred HHHHHHHhhc--hhhhhHHHHHHHHHhhCCCCchhH-HHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHh
Q 037592 88 IVLRACAGLA--ALRLGKEVHCQYIRRSGCKDVIIE-SALVDLYAKCGCVDFAHQIFLQMP---VRNLITWNSMISGFAQ 161 (337)
Q Consensus 88 ~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~ 161 (337)
.+..++...+ +++++...++++++..+ ++...+ ......+...|.+++|+..++++. +.+..+|+.+..++..
T Consensus 112 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~ 190 (334)
T d1dcea1 112 HRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQ 190 (334)
T ss_dssp HHHHHHHTCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHH
T ss_pred HhhHHHHHhccccHHHHHHHHHHHHhhCc-hhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 6666666655 47899999999998865 455554 445577788899999999999988 3467789999999999
Q ss_pred CCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 037592 162 NGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAET 241 (337)
Q Consensus 162 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 241 (337)
.|++++|...+++..+. .|.. ......+...+..+++...+...+.. .+++...+..++..+...|+.++|..
T Consensus 191 ~~~~~~A~~~~~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~--~~~~~~~~~~l~~~~~~~~~~~~a~~ 263 (334)
T d1dcea1 191 LHPQPDSGPQGRLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHRWLLG--RAEPLFRCELSVEKSTVLQSELESCK 263 (334)
T ss_dssp HSCCCCSSSCCSSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHHHHS--CCCCSSSCCCCHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHhHHh--HHHH---HHHHHHHHHhcchhHHHHHHHHHHHh--CcchhhHHHHHHHHHHHHhhHHHHHH
Confidence 99998887766655442 2221 22333455667778888888887653 24555566677778888899999999
Q ss_pred HHHHh-cCCC-chhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHH
Q 037592 242 LIENA-DCRH-DSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRA 298 (337)
Q Consensus 242 ~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 298 (337)
.+.+. ...| +...+..+..++...|++++|++.++++++++|+....|..|...+.-
T Consensus 264 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~~ 322 (334)
T d1dcea1 264 ELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLL 322 (334)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHhH
Confidence 99875 3444 445677788889999999999999999999999987788877666653
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.44 E-value=4.4e-11 Score=96.38 Aligned_cols=186 Identities=12% Similarity=0.066 Sum_probs=138.2
Q ss_pred chhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC--CC-c-HHhHHHHHHHHHhCCCHhHHHHHH
Q 037592 97 AALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP--VR-N-LITWNSMISGFAQNGRGEEALRIF 172 (337)
Q Consensus 97 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~-~~~~~~l~~~~~~~~~~~~a~~~~ 172 (337)
+..++|..+|++.++..++.+...|...+..+.+.|+++.|..+|+++. .| + ...|...+..+.+.|+.+.|.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 4557788888888876554566778888888888999999999998865 22 3 346888888888889999999999
Q ss_pred HHHHhcCCCCCHhHHHHHHH-HHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-c---
Q 037592 173 DDMTEGGTKPDHVSFIGVLS-ACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-D--- 247 (337)
Q Consensus 173 ~~m~~~~~~p~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~--- 247 (337)
+++.+.+.. +...|..... -+...|+.+.|..+|+.+++.. +.++..|...+..+...|+++.|+.+|++. .
T Consensus 158 ~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~--p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~ 234 (308)
T d2onda1 158 KKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp HHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred HHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence 998876433 3333333332 2334678888999999887653 556778888888888999999999999873 2
Q ss_pred CCCc--hhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCc
Q 037592 248 CRHD--SSLWEVLLGACTTFRNAHVAERVAKKIMELKPDC 285 (337)
Q Consensus 248 ~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 285 (337)
..|. ...|...+..-...|+.+.+.++++++.+..|..
T Consensus 235 ~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~ 274 (308)
T d2onda1 235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccc
Confidence 2332 3468888877778899999999998888877764
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.41 E-value=7.4e-11 Score=95.04 Aligned_cols=214 Identities=9% Similarity=-0.008 Sum_probs=159.9
Q ss_pred hhhHHHHHHHHHhhCCCCchhHHHHHHHHHh--------------cCCHHHHHHHHhcCC----CCcHHhHHHHHHHHHh
Q 037592 100 RLGKEVHCQYIRRSGCKDVIIESALVDLYAK--------------CGCVDFAHQIFLQMP----VRNLITWNSMISGFAQ 161 (337)
Q Consensus 100 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------------~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~ 161 (337)
+.+..+|++++...+ .+..+|...+..+.+ .+..++|..+|++.. +.+...|...+..+..
T Consensus 33 ~Rv~~vyerAl~~~~-~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~ 111 (308)
T d2onda1 33 KRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 445566666666543 455555554443322 234577888888754 3356678888899999
Q ss_pred CCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHhcCChHHHH
Q 037592 162 NGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDL-LGRAGLLEEAE 240 (337)
Q Consensus 162 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~ 240 (337)
.|++++|..+|+++.+.........|...+..+.+.|+.+.|.++|+.+++.. +.+...|...+.. +...|+.+.|.
T Consensus 112 ~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~--~~~~~~~~~~a~~e~~~~~~~~~a~ 189 (308)
T d2onda1 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST--TCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred cccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhccCHHHHH
Confidence 99999999999999885443334568888888889999999999999996532 3445555555443 34468999999
Q ss_pred HHHHHh-c-CCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCcc----chHHHHHHHHHHcCChhhHHHHHHHHHH
Q 037592 241 TLIENA-D-CRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCH----LSYVLLDNVYRAVGRWNDAFKIRTLMKY 314 (337)
Q Consensus 241 ~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 314 (337)
.+|+.+ . .+.+...|...+..+...|+++.|..+|++++...|.++ ..|...+..-...|+.+.+..+++++.+
T Consensus 190 ~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 190 KIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999974 2 234567799999999999999999999999999766433 3688888888888999999999999877
Q ss_pred hC
Q 037592 315 SG 316 (337)
Q Consensus 315 ~~ 316 (337)
.-
T Consensus 270 ~~ 271 (308)
T d2onda1 270 AF 271 (308)
T ss_dssp HT
T ss_pred HC
Confidence 54
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.41 E-value=2e-11 Score=95.75 Aligned_cols=216 Identities=13% Similarity=0.015 Sum_probs=150.2
Q ss_pred hhhhhHHHHHHHHHhhCCC---CchhHHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHHH
Q 037592 98 ALRLGKEVHCQYIRRSGCK---DVIIESALVDLYAKCGCVDFAHQIFLQMP---VRNLITWNSMISGFAQNGRGEEALRI 171 (337)
Q Consensus 98 ~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~ 171 (337)
+.+.++.-+++++...... ...++..+..+|.+.|++++|+..|++.. +.++.+|+.+..+|...|++++|+..
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhh
Confidence 4455566666666542211 24577788999999999999999999987 45778999999999999999999999
Q ss_pred HHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhc-CCC
Q 037592 172 FDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENAD-CRH 250 (337)
Q Consensus 172 ~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~ 250 (337)
|+++.+.... +..++..+..++...|++++|...++..++.. +.+......+...+.+.+..+.+..+..... ..+
T Consensus 94 ~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (259)
T d1xnfa_ 94 FDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDK 170 (259)
T ss_dssp HHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCC
T ss_pred hhHHHHHHhh-hhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc--cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccch
Confidence 9999986432 45577778888999999999999999997653 3445444445555556666555555544332 222
Q ss_pred chhHHHHHHHHHhcC----CChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCC
Q 037592 251 DSSLWEVLLGACTTF----RNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGV 317 (337)
Q Consensus 251 ~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 317 (337)
+...++ ++..+... +..+.+...+.......|....+|..++..|...|++++|...|++.....+
T Consensus 171 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 240 (259)
T d1xnfa_ 171 EQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 240 (259)
T ss_dssp CSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred hhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 222222 22222222 2233444444444446677677888999999999999999999999876543
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.34 E-value=1.6e-12 Score=106.28 Aligned_cols=262 Identities=10% Similarity=-0.025 Sum_probs=190.8
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHhh--cCccc-HHHHHH----------HHHhhchhhhhHHHHHHHHHhhCCCCchhH
Q 037592 55 SSALLQGYCQTGDFESVIRIFREMEE--IDLFS-FGIVLR----------ACAGLAALRLGKEVHCQYIRRSGCKDVIIE 121 (337)
Q Consensus 55 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~-~~~l~~----------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 121 (337)
+..++......+..++|+++++++.+ |+..+ |+..-. .+...+++++|+.+++.+++..+ .+...|
T Consensus 32 ~~~~~~~~~~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~p-k~~~~~ 110 (334)
T d1dcea1 32 TQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTW 110 (334)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHH
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCC-CcHHHH
Confidence 34444444455556899999999988 66543 332222 23445668899999999998865 677788
Q ss_pred HHHHHHHHhcC--CHHHHHHHHhcCC---CCcHHhHH-HHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHh
Q 037592 122 SALVDLYAKCG--CVDFAHQIFLQMP---VRNLITWN-SMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS 195 (337)
Q Consensus 122 ~~l~~~~~~~g--~~~~A~~~~~~~~---~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 195 (337)
..+..++...+ ++++|...+.++. +++...+. .....+...+.+++|+..++++.+..+. +...|..+...+.
T Consensus 111 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~-~~~a~~~l~~~~~ 189 (334)
T d1dcea1 111 HHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLP 189 (334)
T ss_dssp HHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Confidence 87877777766 4899999998876 34555554 4457777899999999999999886443 6678888888899
Q ss_pred hcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh--cCCCchhHHHHHHHHHhcCCChhHHHH
Q 037592 196 HMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA--DCRHDSSLWEVLLGACTTFRNAHVAER 273 (337)
Q Consensus 196 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~ 273 (337)
+.|++++|...++..... .|+. ..+...+...+..+++...+.+. ..+++...+..+...+...|+.++|..
T Consensus 190 ~~~~~~~A~~~~~~~~~~---~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 263 (334)
T d1dcea1 190 QLHPQPDSGPQGRLPENV---LLKE---LELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCK 263 (334)
T ss_dssp HHSCCCCSSSCCSSCHHH---HHHH---HHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHhHHh---HHHH---HHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHH
Confidence 999998887766655332 1211 12333455567777777777653 233445556666777888899999999
Q ss_pred HHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCCccCCCCcce
Q 037592 274 VAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVKKMPGKSWI 326 (337)
Q Consensus 274 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 326 (337)
.+.+....+|++..++..++.++...|++++|.+.+++..+.. |.....|-
T Consensus 264 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ld--P~~~~y~~ 314 (334)
T d1dcea1 264 ELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD--PMRAAYLD 314 (334)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC--GGGHHHHH
T ss_pred HHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--cccHHHHH
Confidence 9999999999999999999999999999999999999998853 43344443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.17 E-value=7.8e-10 Score=88.07 Aligned_cols=241 Identities=8% Similarity=-0.058 Sum_probs=114.0
Q ss_pred hhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHcccCChhhHHHHHHHHHcCCChhHHHHHHHHHhh--
Q 037592 3 KQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEE-- 80 (337)
Q Consensus 3 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 80 (337)
.++.+++++..+.+ +|....+. ++.. ...+++++|.++|.+ ....|...|++++|.+.|.++.+
T Consensus 2 ~~~~~~l~~aek~~-~~~~~~~~-~~~~-~~~~~~~~Aa~~y~~-----------aa~~y~~~~~~~~A~~~y~kA~~~~ 67 (290)
T d1qqea_ 2 SDPVELLKRAEKKG-VPSSGFMK-LFSG-SDSYKFEEAADLCVQ-----------AATIYRLRKELNLAGDSFLKAADYQ 67 (290)
T ss_dssp CCHHHHHHHHHHHS-SCCCTHHH-HHSC-CSHHHHHHHHHHHHH-----------HHHHHHHTTCTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhc-CcchhHHH-HhcC-CccccHHHHHHHHHH-----------HHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 45677777777765 44443222 1110 223356777766554 35667777888888888877655
Q ss_pred ---cCc----ccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHH
Q 037592 81 ---IDL----FSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWN 153 (337)
Q Consensus 81 ---~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 153 (337)
.+. .+|..+..+|.+.|++++|...+++.++.....+ +... ...++.
T Consensus 68 ~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~---------------~~~~-----------~~~~~~ 121 (290)
T d1qqea_ 68 KKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRG---------------QFRR-----------GANFKF 121 (290)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---------------CHHH-----------HHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcc---------------cchh-----------HHHHHH
Confidence 111 2344444455555555555555444433211110 0000 012333
Q ss_pred HHHHHHH-hCCCHhHHHHHHHHHHhc----CCCC-CHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCC----C-HHH
Q 037592 154 SMISGFA-QNGRGEEALRIFDDMTEG----GTKP-DHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKP----K-IEH 222 (337)
Q Consensus 154 ~l~~~~~-~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~-~~~ 222 (337)
.+...|. ..|++++|+..+++..+. +.++ ...++..+...+...|++++|...++++.......+ . ...
T Consensus 122 ~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~ 201 (290)
T d1qqea_ 122 ELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDY 201 (290)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHH
T ss_pred HHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHH
Confidence 3444442 235555555555554321 1111 122344455566666666666666666543211111 0 122
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhc-CCCc------hhHHHHHHHHHhc--CCChhHHHHHHHHHHhcCC
Q 037592 223 YNCMVDLLGRAGLLEEAETLIENAD-CRHD------SSLWEVLLGACTT--FRNAHVAERVAKKIMELKP 283 (337)
Q Consensus 223 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~------~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~p 283 (337)
+...+..+...|+++.|.+.+++.. ..|. ......++.++.. .+.+++|+..|+++.+++|
T Consensus 202 ~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD~ 271 (290)
T d1qqea_ 202 FLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271 (290)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCH
Confidence 3334445556666666666666542 2221 1223444444433 2345666666655544443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.14 E-value=1.1e-09 Score=87.09 Aligned_cols=189 Identities=12% Similarity=0.017 Sum_probs=118.5
Q ss_pred HHHHHhcCCHHHHHHHHhcCCC-----Cc----HHhHHHHHHHHHhCCCHhHHHHHHHHHHhc----CCC-CCHhHHHHH
Q 037592 125 VDLYAKCGCVDFAHQIFLQMPV-----RN----LITWNSMISGFAQNGRGEEALRIFDDMTEG----GTK-PDHVSFIGV 190 (337)
Q Consensus 125 ~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~-p~~~~~~~l 190 (337)
...|...|++++|.+.|.+... .+ ..+|..+..+|.+.|++++|...+++..+. |.. ....++..+
T Consensus 44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 123 (290)
T d1qqea_ 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (290)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence 3455556666666666555431 11 246677777788888888888887766542 110 112344455
Q ss_pred HHHHh-hcCchhhHHHHHHHHHHhc---CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhc-CCCc-------h-hHHH
Q 037592 191 LSACS-HMGLIDRGRKHFASMTKEY---RIKP-KIEHYNCMVDLLGRAGLLEEAETLIENAD-CRHD-------S-SLWE 256 (337)
Q Consensus 191 ~~~~~-~~~~~~~a~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-------~-~~~~ 256 (337)
...|. ..|++++|+..++.+.+-. +.++ ...++..++..|...|++++|...|++.. ..+. . ..+.
T Consensus 124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (290)
T d1qqea_ 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (290)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHH
Confidence 55564 4699999999999875422 1111 13567888999999999999999999742 1111 1 1233
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHhcCCCccc-----hHHHHHHHHHH--cCChhhHHHHHHHHH
Q 037592 257 VLLGACTTFRNAHVAERVAKKIMELKPDCHL-----SYVLLDNVYRA--VGRWNDAFKIRTLMK 313 (337)
Q Consensus 257 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----~~~~l~~~~~~--~g~~~~A~~~~~~m~ 313 (337)
..+..+...|+++.|...++++.+.+|..+. ....++.++.. .+.+++|+..|+++.
T Consensus 204 ~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 204 KKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (290)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 4445677899999999999999998876333 34556666655 245778888776543
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.06 E-value=1.3e-08 Score=75.41 Aligned_cols=87 Identities=11% Similarity=-0.098 Sum_probs=63.6
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHH
Q 037592 125 VDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGR 204 (337)
Q Consensus 125 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 204 (337)
...+...|++++|++.|+++.+++..+|..+..+|...|++++|++.|++.++.... ....|..+..++.+.|++++|.
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHhhccHHHHH
Confidence 445667788888888888777777777777778888888888888888887775322 4556666777777778888887
Q ss_pred HHHHHHHH
Q 037592 205 KHFASMTK 212 (337)
Q Consensus 205 ~~~~~~~~ 212 (337)
..|+..+.
T Consensus 91 ~~~~kAl~ 98 (192)
T d1hh8a_ 91 KDLKEALI 98 (192)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777654
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.01 E-value=3.6e-09 Score=78.44 Aligned_cols=141 Identities=8% Similarity=-0.111 Sum_probs=92.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHcccCChhhHHHHHHHHHcCCChhHHHHHHHHHhh--c-CcccHHHHHHHHHhhchh
Q 037592 23 VESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEE--I-DLFSFGIVLRACAGLAAL 99 (337)
Q Consensus 23 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~ 99 (337)
.|+. ...+...|++++|++.|+++.+++..+|..+..+|...|++++|++.|++..+ | +...|..+..++.+.|++
T Consensus 8 l~~~-g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~ 86 (192)
T d1hh8a_ 8 LWNE-GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKY 86 (192)
T ss_dssp HHHH-HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHH-HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccH
Confidence 3443 56667788888888888888777888888888888888888888888888877 3 334667777777778888
Q ss_pred hhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCC-cHHhHHHHHHHHHhCCCHhHHHHHHHHHHhc
Q 037592 100 RLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVR-NLITWNSMISGFAQNGRGEEALRIFDDMTEG 178 (337)
Q Consensus 100 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 178 (337)
++|...|++.+..........+..+ |. .... ...++..+..++.+.|++++|.+.|....+.
T Consensus 87 ~~A~~~~~kAl~~~~~n~~~~~~~~-------~~----------~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 87 DLAIKDLKEALIQLRGNQLIDYKIL-------GL----------QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149 (192)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGG-------TB----------CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCccCchHHHHHh-------hh----------hcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 8887777777654321111000000 00 0000 1234556677778888888888888877764
Q ss_pred CCC
Q 037592 179 GTK 181 (337)
Q Consensus 179 ~~~ 181 (337)
...
T Consensus 150 ~~~ 152 (192)
T d1hh8a_ 150 KSE 152 (192)
T ss_dssp CCS
T ss_pred CCC
Confidence 433
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.97 E-value=1.3e-08 Score=68.72 Aligned_cols=103 Identities=13% Similarity=-0.007 Sum_probs=68.4
Q ss_pred HHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-c-CCCchhHHHHHHHHHhcCCCh
Q 037592 191 LSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-D-CRHDSSLWEVLLGACTTFRNA 268 (337)
Q Consensus 191 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~ 268 (337)
...+.+.|++++|+..|+.+++.. +.+...|..+..+|...|++++|+..+++. . .+.++..|..+..++...|++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC--CcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCH
Confidence 445666777777777777776542 445666777777777777777777777653 2 233555666677777777777
Q ss_pred hHHHHHHHHHHhcCCCccchHHHHHHH
Q 037592 269 HVAERVAKKIMELKPDCHLSYVLLDNV 295 (337)
Q Consensus 269 ~~a~~~~~~~~~~~p~~~~~~~~l~~~ 295 (337)
++|+..|+++++.+|+++..+..+..+
T Consensus 88 ~~A~~~~~~a~~~~p~~~~~~~~l~~l 114 (117)
T d1elwa_ 88 EEAKRTYEEGLKHEANNPQLKEGLQNM 114 (117)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 777777777777777766665555443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.96 E-value=5e-09 Score=78.32 Aligned_cols=115 Identities=8% Similarity=-0.136 Sum_probs=79.7
Q ss_pred CCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cCCC-chhHHHHHH
Q 037592 182 PDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DCRH-DSSLWEVLL 259 (337)
Q Consensus 182 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~ 259 (337)
|+...+......+.+.|++++|+..|+.+++.. +.++..|..++.+|.+.|++++|+..|++. ...| +..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~--p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence 566666667777778888888888887776543 455677777778888888888888888764 4444 355677777
Q ss_pred HHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHH
Q 037592 260 GACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRA 298 (337)
Q Consensus 260 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 298 (337)
.+|...|++++|+..|+++.++.|++...+...+..+..
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~ 118 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR 118 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 778888888888888888777766654444444444433
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.92 E-value=2.8e-08 Score=71.15 Aligned_cols=117 Identities=9% Similarity=-0.062 Sum_probs=92.0
Q ss_pred HHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cCCC-chhHHHHHHHHHhcCCC
Q 037592 190 VLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DCRH-DSSLWEVLLGACTTFRN 267 (337)
Q Consensus 190 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~ 267 (337)
....|.+.|++++|...|+++++.. +.+...|..+..+|...|++++|...|++. ...| +...|..+..++...|+
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHhhhccccc--hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCC
Confidence 3456778899999999999987653 556788888999999999999999999874 3333 55788888899999999
Q ss_pred hhHHHHHHHHHHhcCCCccchHHHHHHHH--HHcCChhhHHHH
Q 037592 268 AHVAERVAKKIMELKPDCHLSYVLLDNVY--RAVGRWNDAFKI 308 (337)
Q Consensus 268 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~A~~~ 308 (337)
+++|...++++..+.|+++..+..+..+. ...+.+++|...
T Consensus 94 ~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 94 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999888777766553 334456666554
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.87 E-value=9e-09 Score=76.89 Aligned_cols=96 Identities=7% Similarity=-0.049 Sum_probs=81.9
Q ss_pred CcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCC-CHHHHHH
Q 037592 147 RNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKP-KIEHYNC 225 (337)
Q Consensus 147 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~ 225 (337)
|+...+......|.+.|++++|+..|++.++..+ .+...|..+..+|.+.|++++|+..++.++ .+.| +..+|..
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p-~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al---~l~p~~~~a~~~ 77 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRAL---ELDGQSVKAHFF 77 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSCTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHhhhhhhhhhhHHHHHHH---HhCCCcHHHHHH
Confidence 5666777788999999999999999999988643 366778888899999999999999999996 3455 4788999
Q ss_pred HHHHHHhcCChHHHHHHHHHh
Q 037592 226 MVDLLGRAGLLEEAETLIENA 246 (337)
Q Consensus 226 l~~~~~~~g~~~~A~~~~~~~ 246 (337)
++.+|...|++++|...|++.
T Consensus 78 lg~~~~~l~~~~~A~~~~~~a 98 (201)
T d2c2la1 78 LGQCQLEMESYDEAIANLQRA 98 (201)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 999999999999999999873
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.87 E-value=1.8e-08 Score=68.09 Aligned_cols=92 Identities=16% Similarity=0.082 Sum_probs=82.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHh-c-CCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCCh
Q 037592 225 CMVDLLGRAGLLEEAETLIENA-D-CRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRW 302 (337)
Q Consensus 225 ~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 302 (337)
.-+..+.+.|++++|+..|++. . .+.+...|..+..++...|++++|+..+.++++++|+++..|..++.++...|++
T Consensus 8 ~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 8 EKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCH
Confidence 3467788999999999999984 3 4446677999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhC
Q 037592 303 NDAFKIRTLMKYSG 316 (337)
Q Consensus 303 ~~A~~~~~~m~~~~ 316 (337)
++|+..|++..+..
T Consensus 88 ~~A~~~~~~a~~~~ 101 (117)
T d1elwa_ 88 EEAKRTYEEGLKHE 101 (117)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999988744
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.86 E-value=1.1e-08 Score=68.42 Aligned_cols=90 Identities=13% Similarity=-0.072 Sum_probs=78.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHh-cCCC-chhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCC
Q 037592 224 NCMVDLLGRAGLLEEAETLIENA-DCRH-DSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGR 301 (337)
Q Consensus 224 ~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 301 (337)
..++..+.+.|++++|...|++. ...| ++..|..+..++.+.|++++|+..++++++++|+++.++..++.+|...|+
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCC
Confidence 34567788899999999999874 3344 577888888999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHH
Q 037592 302 WNDAFKIRTLMK 313 (337)
Q Consensus 302 ~~~A~~~~~~m~ 313 (337)
+++|.+.+++..
T Consensus 100 ~~~A~~~l~~~l 111 (112)
T d1hxia_ 100 ANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998753
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.83 E-value=1.5e-06 Score=67.60 Aligned_cols=222 Identities=10% Similarity=-0.097 Sum_probs=131.1
Q ss_pred HHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHh----cCCHHHHHHHHhcCCCC-cHHhHHHHHHHHH
Q 037592 86 FGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAK----CGCVDFAHQIFLQMPVR-NLITWNSMISGFA 160 (337)
Q Consensus 86 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~ 160 (337)
+..|...+...+++++|++.|++..+.| +...+..|...|.. ..+...|...+.....+ +......+...+.
T Consensus 5 ~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~~a~~~l~~~~~ 81 (265)
T d1ouva_ 5 LVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYY 81 (265)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccccchhhccccccc
Confidence 3344444445555555555555555443 33444445555554 44566666666555422 3344444444333
Q ss_pred h----CCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHh----hcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 037592 161 Q----NGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACS----HMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGR 232 (337)
Q Consensus 161 ~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 232 (337)
. .++.+.|...++...+.|... ....+...+. .......+...+..... ..+...+..|...|..
T Consensus 82 ~~~~~~~~~~~a~~~~~~a~~~g~~~---a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~L~~~~~~ 154 (265)
T d1ouva_ 82 SGQGVSQNTNKALQYYSKACDLKYAE---GCASLGGIYHDGKVVTRDFKKAVEYFTKACD----LNDGDGCTILGSLYDA 154 (265)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTTCHH---HHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred cccccchhhHHHHHHHhhhhhhhhhh---HHHhhcccccCCCcccchhHHHHHHhhhhhc----ccccchhhhhhhhhcc
Confidence 2 456777888888777655422 2222222222 23445666666666532 3556677777777765
Q ss_pred ----cCChHHHHHHHHHhcCCCchhHHHHHHHHHhc----CCChhHHHHHHHHHHhcCCCccchHHHHHHHHHH----cC
Q 037592 233 ----AGLLEEAETLIENADCRHDSSLWEVLLGACTT----FRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRA----VG 300 (337)
Q Consensus 233 ----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g 300 (337)
..+...+...++......+......+...|.. ..+++.|+.+|+++.+.. ++.++..|+.+|.. ..
T Consensus 155 ~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~ 232 (265)
T d1ouva_ 155 GRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--NGGGCFNLGAMQYNGEGVTR 232 (265)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSC
T ss_pred CCCcccccccchhhhhccccccccccccchhhhcccCcccccchhhhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCcc
Confidence 45666777777765434455555555545443 568999999999988764 35677788888875 34
Q ss_pred ChhhHHHHHHHHHHhCCcc
Q 037592 301 RWNDAFKIRTLMKYSGVKK 319 (337)
Q Consensus 301 ~~~~A~~~~~~m~~~~~~~ 319 (337)
+.++|.+.|++..+.|..+
T Consensus 233 n~~~A~~~~~kAa~~g~~~ 251 (265)
T d1ouva_ 233 NEKQAIENFKKGCKLGAKG 251 (265)
T ss_dssp CSTTHHHHHHHHHHHTCHH
T ss_pred CHHHHHHHHHHHHHCcCHH
Confidence 7889999999988888654
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.79 E-value=5.4e-08 Score=65.93 Aligned_cols=104 Identities=13% Similarity=0.015 Sum_probs=81.8
Q ss_pred HHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHh-cCCCch---hHHHHHHH
Q 037592 188 IGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL---LEEAETLIENA-DCRHDS---SLWEVLLG 260 (337)
Q Consensus 188 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~~~~---~~~~~l~~ 260 (337)
..+++.+...+++++|.+.|+.++... +.++.++..+..++.+.++ +++|+.+++++ ...|+. .+|..+..
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~--p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG--SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 456778888899999999999997653 5677888899999987554 45699999885 334433 35777888
Q ss_pred HHhcCCChhHHHHHHHHHHhcCCCccchHHHHH
Q 037592 261 ACTTFRNAHVAERVAKKIMELKPDCHLSYVLLD 293 (337)
Q Consensus 261 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 293 (337)
+|.+.|++++|++.|+++++++|++..+.....
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~ 113 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELER 113 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 899999999999999999999999866655443
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.79 E-value=6.2e-08 Score=69.33 Aligned_cols=94 Identities=14% Similarity=0.011 Sum_probs=83.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHh-cC-CCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCC
Q 037592 224 NCMVDLLGRAGLLEEAETLIENA-DC-RHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGR 301 (337)
Q Consensus 224 ~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 301 (337)
...+..|.+.|++++|+..|++. .. +.+...|..+..+|...|++++|+..|+++++++|++..+|..++.++...|+
T Consensus 14 ~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 14 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCC
Confidence 34566788999999999999974 33 34667788888999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhCC
Q 037592 302 WNDAFKIRTLMKYSGV 317 (337)
Q Consensus 302 ~~~A~~~~~~m~~~~~ 317 (337)
+++|...+++......
T Consensus 94 ~~eA~~~~~~a~~~~p 109 (159)
T d1a17a_ 94 FRAALRDYETVVKVKP 109 (159)
T ss_dssp HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCC
Confidence 9999999999988653
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.79 E-value=1.4e-07 Score=68.23 Aligned_cols=133 Identities=10% Similarity=0.028 Sum_probs=91.4
Q ss_pred hHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 037592 151 TWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLL 230 (337)
Q Consensus 151 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 230 (337)
.+......+.+.|++++|+..|++.+... |.... ..+.-......+ ...+|+.+..+|
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~--~~~~~------------~~~~~~~~~~~~--------~~~~~~nla~~y 72 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESS------------FSNEEAQKAQAL--------RLASHLNLAMCH 72 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCC------------CCSHHHHHHHHH--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHh--hhccc------------cchHHHhhhchh--------HHHHHHHHHHHH
Confidence 34455667777788888888877776531 11000 000001111111 123677788899
Q ss_pred HhcCChHHHHHHHHHh-cCCC-chhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhH
Q 037592 231 GRAGLLEEAETLIENA-DCRH-DSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDA 305 (337)
Q Consensus 231 ~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 305 (337)
.+.|++++|+..+++. ...| ++..|..+..+|...|++++|+..|+++++++|+++.+...+..+....+...+.
T Consensus 73 ~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~ 149 (170)
T d1p5qa1 73 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 149 (170)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999873 4444 6778888889999999999999999999999999888888877776655544433
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.65 E-value=4e-05 Score=59.13 Aligned_cols=60 Identities=12% Similarity=0.028 Sum_probs=32.8
Q ss_pred hHhHHHHHHHHHhcCChHHHHHHHHHcccC-ChhhHHHHHHHHHc----CCChhHHHHHHHHHhh
Q 037592 21 VVVESSLVDMYGKCGLVDESHRVFDKMLKK-NSVSSSALLQGYCQ----TGDFESVIRIFREMEE 80 (337)
Q Consensus 21 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~ 80 (337)
+..+..|...+.+.+++++|++.|++..+. +...+..|...|.. ..++..|...++....
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~ 66 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACD 66 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccc
Confidence 344455555556666666666666665332 44445555555543 4455556555555544
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.62 E-value=1.3e-06 Score=62.86 Aligned_cols=94 Identities=10% Similarity=-0.047 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHh-c-CCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHH
Q 037592 221 EHYNCMVDLLGRAGLLEEAETLIENA-D-CRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRA 298 (337)
Q Consensus 221 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 298 (337)
.+|+.+..+|.+.|++++|+..+++. . .+.+...|..+..++...|++++|+..|+++++++|+++.+...+..+...
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 144 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKK 144 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 46677888999999999999999873 3 345677888888999999999999999999999999998888888777766
Q ss_pred cCChh-hHHHHHHHHHH
Q 037592 299 VGRWN-DAFKIRTLMKY 314 (337)
Q Consensus 299 ~g~~~-~A~~~~~~m~~ 314 (337)
.+... ...+.|..|.+
T Consensus 145 ~~~~~e~~kk~~~~~f~ 161 (168)
T d1kt1a1 145 AKEHNERDRRTYANMFK 161 (168)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHh
Confidence 65444 34556666654
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.61 E-value=1.1e-08 Score=87.63 Aligned_cols=219 Identities=10% Similarity=-0.105 Sum_probs=101.2
Q ss_pred HHHHHHHHHhh--cC-cccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC-
Q 037592 70 SVIRIFREMEE--ID-LFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP- 145 (337)
Q Consensus 70 ~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 145 (337)
+|.++|+++.+ || ..++..+..++...+++++| |++++...+ .....++..... .+ ..+..+.+.++...
T Consensus 4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp-~~a~~~~~e~~L-w~-~~y~~~ie~~r~~~k 77 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDL-EYALDKKVEQDL-WN-HAFKNQITTLQGQAK 77 (497)
T ss_dssp HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCH-HHHHHHTHHHHH-HH-HHTHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcCh-hhHHHHhHHHHH-HH-HHHHHHHHHHHHhcc
Confidence 57788888776 44 34566677777777777665 666665432 111111111111 11 11233444444332
Q ss_pred ---CCcHHhHHH--HHHHHHhCCCHhHHHHHHHHHHhcCCCC-CHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCC
Q 037592 146 ---VRNLITWNS--MISGFAQNGRGEEALRIFDDMTEGGTKP-DHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPK 219 (337)
Q Consensus 146 ---~~~~~~~~~--l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 219 (337)
.++...... +...+...+.++.++..+....+ +.| +...+..+...+.+.|+.+.|...+...+.- .|
T Consensus 78 ~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~--l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~~- 151 (497)
T d1ya0a1 78 NRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFN--VDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY---IC- 151 (497)
T ss_dssp CSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC---------------------------------CCHHHHH---HH-
T ss_pred cccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC---CH-
Confidence 122111111 11112223444455444443333 222 3344555555666677777777666655432 11
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHh-cCCC-chhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHH
Q 037592 220 IEHYNCMVDLLGRAGLLEEAETLIENA-DCRH-DSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297 (337)
Q Consensus 220 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 297 (337)
..++..++..+...|++++|...|++. ...| +...|+.+...+...|+..+|+..|.+++...|+.+.++..|...+.
T Consensus 152 ~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~ 231 (497)
T d1ya0a1 152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 245566677777777777777777763 2333 44567777777777777777777777777777766777777776665
Q ss_pred HcC
Q 037592 298 AVG 300 (337)
Q Consensus 298 ~~g 300 (337)
+..
T Consensus 232 ~~~ 234 (497)
T d1ya0a1 232 KAL 234 (497)
T ss_dssp HHT
T ss_pred Hhh
Confidence 543
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.60 E-value=5.8e-07 Score=60.66 Aligned_cols=97 Identities=9% Similarity=-0.053 Sum_probs=77.3
Q ss_pred HHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCH---HHHHHHHhcCCC--CcH---HhHHHHHHH
Q 037592 87 GIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCV---DFAHQIFLQMPV--RNL---ITWNSMISG 158 (337)
Q Consensus 87 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~--~~~---~~~~~l~~~ 158 (337)
..++..+...+++++|++.|++.++.++ .+..++..+..++.+.++. ++|+.+|+++.. |+. .++..+..+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p-~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 4577788889999999999999999876 7788888899888876554 569999988763 322 367788899
Q ss_pred HHhCCCHhHHHHHHHHHHhcCCCCCHhH
Q 037592 159 FAQNGRGEEALRIFDDMTEGGTKPDHVS 186 (337)
Q Consensus 159 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 186 (337)
|.+.|++++|++.|+++++ +.|+..-
T Consensus 82 y~~~g~~~~A~~~~~~aL~--~~P~~~~ 107 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQ--TEPQNNQ 107 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCTTCHH
T ss_pred HHHHhhhHHHHHHHHHHHH--hCcCCHH
Confidence 9999999999999999988 4565443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.57 E-value=1.7e-07 Score=62.56 Aligned_cols=18 Identities=6% Similarity=0.108 Sum_probs=7.1
Q ss_pred HHcCCChhHHHHHHHHHh
Q 037592 62 YCQTGDFESVIRIFREME 79 (337)
Q Consensus 62 ~~~~g~~~~A~~~~~~~~ 79 (337)
+.+.|++++|+..|++..
T Consensus 26 ~~~~g~~~~A~~~~~~al 43 (112)
T d1hxia_ 26 MLKLANLAEAALAFEAVC 43 (112)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHhhhc
Confidence 333344444444444333
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.57 E-value=7.2e-07 Score=64.31 Aligned_cols=65 Identities=12% Similarity=-0.090 Sum_probs=59.6
Q ss_pred hHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCC
Q 037592 253 SLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGV 317 (337)
Q Consensus 253 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 317 (337)
.+|+.+..+|.+.|++++|+..++++++++|+++.+|..++.+|...|++++|+..|++..+...
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P 127 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP 127 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 34666788899999999999999999999999999999999999999999999999999988553
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.50 E-value=5.8e-07 Score=63.57 Aligned_cols=63 Identities=11% Similarity=-0.072 Sum_probs=42.6
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhC
Q 037592 254 LWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSG 316 (337)
Q Consensus 254 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 316 (337)
++..+..+|.+.|++++|++.++++++++|++..+|..++.++...|++++|+..|++..+..
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~ 131 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 131 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 445555666677777777777777777777766677777777777777777777776666543
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.49 E-value=7.5e-08 Score=82.33 Aligned_cols=218 Identities=9% Similarity=-0.055 Sum_probs=117.7
Q ss_pred hhHHHHHHHHhcCCCCc-hHhHHHHHHHHHhcCChHHHHHHHHHcccCChhh---HHHHHHHHHcCCChhHHHHHHHHHh
Q 037592 4 QGKEVHAKVITLGLCGN-VVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVS---SSALLQGYCQTGDFESVIRIFREME 79 (337)
Q Consensus 4 ~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~ 79 (337)
+|.+.|++..+. +|+ ...+..+..++...|++++| |++++..|+.. ++.....+ ...+..+.+.+++..
T Consensus 4 eA~q~~~qA~~l--~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw--~~~y~~~ie~~r~~~ 76 (497)
T d1ya0a1 4 QSAQYLRQAEVL--KADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLW--NHAFKNQITTLQGQA 76 (497)
T ss_dssp HHHHHHHHHHHH--HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHH--HHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc--CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHH--HHHHHHHHHHHHHhc
Confidence 678888888876 455 45677778888888888876 66664333221 11111111 112455666666665
Q ss_pred h----cCcccHHHHH--HHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcH-HhH
Q 037592 80 E----IDLFSFGIVL--RACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNL-ITW 152 (337)
Q Consensus 80 ~----~~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~ 152 (337)
+ ++........ ......+.++.+...+....+..+ ++...+..+...+.+.|+.++|...+.+...++. .++
T Consensus 77 k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~ 155 (497)
T d1ya0a1 77 KNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDL-PCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCL 155 (497)
T ss_dssp SCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHHHHHHH
T ss_pred ccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCh-hhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHHHHH
Confidence 4 2222221111 122334556666665555544433 4566677778888888888888877766554433 466
Q ss_pred HHHHHHHHhCCCHhHHHHHHHHHHhcCCCC-CHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 037592 153 NSMISGFAQNGRGEEALRIFDDMTEGGTKP-DHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLG 231 (337)
Q Consensus 153 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 231 (337)
..+...+...|++++|...|++..+. .| +...|+.+...+...|+..+|...|.+.+.. .+|-+.++..|...+.
T Consensus 156 ~~LG~l~~~~~~~~~A~~~y~~A~~l--~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~--~~~~~~a~~nL~~~~~ 231 (497)
T d1ya0a1 156 VHLGDIARYRNQTSQAESYYRHAAQL--VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV--KFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS--SBCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCHHHHHHHHHHHH
Confidence 77788888889999999999888885 34 4467888888888889999999888888643 2566777777777665
Q ss_pred hc
Q 037592 232 RA 233 (337)
Q Consensus 232 ~~ 233 (337)
+.
T Consensus 232 ~~ 233 (497)
T d1ya0a1 232 KA 233 (497)
T ss_dssp HH
T ss_pred Hh
Confidence 43
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.49 E-value=1.6e-06 Score=61.28 Aligned_cols=127 Identities=11% Similarity=-0.082 Sum_probs=88.9
Q ss_pred HhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 037592 150 ITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDL 229 (337)
Q Consensus 150 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 229 (337)
..+......+.+.|++.+|+..|.++...- |... ... +.... ... . .....++..+..+
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~--~~~~-----------~~~-~~~~~--~~~-~----~~~~~~~~Nla~~ 76 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTE-----------EWD-DQILL--DKK-K----NIEISCNLNLATC 76 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCT-----------TCC-CHHHH--HHH-H----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cchh-----------hhh-hHHHH--Hhh-h----hHHHHHHhhHHHH
Confidence 345556677888888888888888877631 1100 000 00000 000 0 1123477788999
Q ss_pred HHhcCChHHHHHHHHHh-cCCC-chhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHH
Q 037592 230 LGRAGLLEEAETLIENA-DCRH-DSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYR 297 (337)
Q Consensus 230 ~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 297 (337)
|.+.|++++|++.+++. ...| +..+|..+..++...|++++|+..|+++++++|++..+...+..+..
T Consensus 77 ~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~ 146 (153)
T d2fbna1 77 YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN 146 (153)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999999873 3334 67889999999999999999999999999999998777766655443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.47 E-value=0.00015 Score=57.47 Aligned_cols=266 Identities=8% Similarity=0.042 Sum_probs=145.4
Q ss_pred CCchHhHHHHHHHHHhcCChHHHHHHHHHcccCChhhHHHHHHHHHcCCChhHHHHHHHHHhhcCcccHHHHHHHHHhhc
Q 037592 18 CGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLA 97 (337)
Q Consensus 18 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~ 97 (337)
.||..-...++..|.+.|.++.|..+|..+.. |..++..+.+.++++.|.+++.+. .+..+|..+...|.+..
T Consensus 11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d-----~~rl~~~~v~l~~~~~avd~~~k~--~~~~~~k~~~~~l~~~~ 83 (336)
T d1b89a_ 11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGK 83 (336)
T ss_dssp CC----------------CTTTHHHHHHHTTC-----HHHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTT
T ss_pred CCCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC-----HHHHHHHHHhhccHHHHHHHHHHc--CCHHHHHHHHHHHHhCc
Confidence 45555566677888899999999999986644 677888889999999998888765 45557878888887765
Q ss_pred hhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC---CCcHHhHHHHHHHHHhCCCHhHHHHHHHH
Q 037592 98 ALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP---VRNLITWNSMISGFAQNGRGEEALRIFDD 174 (337)
Q Consensus 98 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 174 (337)
....+ ++.......+......++..|...|.+++...+++... ..+...++-++..|++.+ .++..+.+..
T Consensus 84 e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e~l~~ 157 (336)
T d1b89a_ 84 EFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHLEL 157 (336)
T ss_dssp CHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHHHHH
T ss_pred HHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHHHHHh
Confidence 55432 22222333455556678888999999999999988654 456667888888888764 4444444443
Q ss_pred HHhcCCCCCH----------hHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 037592 175 MTEGGTKPDH----------VSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIE 244 (337)
Q Consensus 175 m~~~~~~p~~----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 244 (337)
.. ...+. ..|.-++..|.+.|+++.|..++- +. +++..-....+..+.+.++.+...++..
T Consensus 158 ~s---~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i---~~---~~~~~~~~~f~e~~~k~~N~e~~~~~i~ 228 (336)
T d1b89a_ 158 FW---SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMM---NH---PTDAWKEGQFKDIITKVANVELYYRAIQ 228 (336)
T ss_dssp HS---TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHH---HS---TTTTCCHHHHHHHHHHCSSTHHHHHHHH
T ss_pred cc---ccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHH---Hc---chhhhhHHHHHHHHHccCChHHHHHHHH
Confidence 31 11111 112334444444555554443321 11 2222222333444555555554444433
Q ss_pred H-hcCCCchhHHHH-------------HHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHH
Q 037592 245 N-ADCRHDSSLWEV-------------LLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIR 309 (337)
Q Consensus 245 ~-~~~~~~~~~~~~-------------l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 309 (337)
- +..+|+ ..+. ++..+.+.++......+++...+ -++......+...|...++++.-.+..
T Consensus 229 ~yL~~~p~--~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~--~n~~~vn~al~~lyie~~d~~~l~~~i 303 (336)
T d1b89a_ 229 FYLEFKPL--LLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQN--HNNKSVNESLNNLFITEEDYQALRTSI 303 (336)
T ss_dssp HHHHHCGG--GHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHT--TCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHcCHH--HHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHH--cChHHHHHHHHHHHhCcchhHHHHHHH
Confidence 2 112221 1233 33344445555555555544433 233568889999999998865544433
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.45 E-value=5.8e-07 Score=61.44 Aligned_cols=96 Identities=9% Similarity=0.014 Sum_probs=58.6
Q ss_pred HHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-cCCC---c-----hhHHHH
Q 037592 187 FIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIENA-DCRH---D-----SSLWEV 257 (337)
Q Consensus 187 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~---~-----~~~~~~ 257 (337)
+..+...+...|++++|+..|+++++.. +.+..++..+..+|.+.|++++|...+++. ...| . ..+|..
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~ 84 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 3345556667777777777777775542 345666666777777777777777777653 1111 1 124445
Q ss_pred HHHHHhcCCChhHHHHHHHHHHhcCCC
Q 037592 258 LLGACTTFRNAHVAERVAKKIMELKPD 284 (337)
Q Consensus 258 l~~~~~~~g~~~~a~~~~~~~~~~~p~ 284 (337)
+...+...+++++|+..|++.....|+
T Consensus 85 lg~~~~~~~~~~~A~~~~~kal~~~~~ 111 (128)
T d1elra_ 85 IGNSYFKEEKYKDAIHFYNKSLAEHRT 111 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 555566666777777777766666655
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.44 E-value=2.5e-06 Score=61.36 Aligned_cols=82 Identities=11% Similarity=-0.048 Sum_probs=60.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHh-cCCC-chhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHH
Q 037592 219 KIEHYNCMVDLLGRAGLLEEAETLIENA-DCRH-DSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVY 296 (337)
Q Consensus 219 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 296 (337)
....+..+..+|.+.|++++|+..+++. ...| ++..|..+..++...|+++.|+..|+++++++|++......+..+.
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~ 155 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 155 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3456677778888888888888888763 3333 5566777788888888888888888888888888777776666655
Q ss_pred HHcC
Q 037592 297 RAVG 300 (337)
Q Consensus 297 ~~~g 300 (337)
.+..
T Consensus 156 ~~l~ 159 (169)
T d1ihga1 156 QKIK 159 (169)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.42 E-value=1.4e-06 Score=62.71 Aligned_cols=67 Identities=7% Similarity=-0.029 Sum_probs=60.6
Q ss_pred chhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCC
Q 037592 251 DSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGV 317 (337)
Q Consensus 251 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 317 (337)
....|..+..++.+.|++++|+..++++++++|+++.+|..++.++...|++++|+..|++..+...
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p 142 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP 142 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 3445677778899999999999999999999999999999999999999999999999999988543
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.40 E-value=2.5e-06 Score=61.75 Aligned_cols=119 Identities=14% Similarity=0.053 Sum_probs=84.1
Q ss_pred HHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChH-HHHHHHHHhcCCCchhHHHHHHHHHhcCCChh
Q 037592 191 LSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLE-EAETLIENADCRHDSSLWEVLLGACTTFRNAH 269 (337)
Q Consensus 191 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 269 (337)
.......|++++|.+.|..++.-. +.... .. ...+.+- ....-++.. ....+..+...+...|+++
T Consensus 18 g~~~~~~g~~e~A~~~~~~AL~l~---rG~~l-----~~-~~~~~w~~~~r~~l~~~----~~~a~~~la~~~~~~g~~~ 84 (179)
T d2ff4a2 18 GVHAAAAGRFEQASRHLSAALREW---RGPVL-----DD-LRDFQFVEPFATALVED----KVLAHTAKAEAEIACGRAS 84 (179)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC---CSSTT-----GG-GTTSTTHHHHHHHHHHH----HHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhC---ccccc-----cc-CcchHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCCch
Confidence 345667888888888888886432 21100 00 0001111 111111111 2345777888999999999
Q ss_pred HHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHH-----hCCccCCC
Q 037592 270 VAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKY-----SGVKKMPG 322 (337)
Q Consensus 270 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~ 322 (337)
+|+..++++++.+|.+...|..++.+|...|++.+|++.|+++.+ .|+.|.+.
T Consensus 85 ~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~ 142 (179)
T d2ff4a2 85 AVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 142 (179)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHH
Confidence 999999999999999999999999999999999999999999844 58887654
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.37 E-value=5.7e-06 Score=56.26 Aligned_cols=94 Identities=10% Similarity=0.039 Sum_probs=66.4
Q ss_pred hHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCC-----HHHHHH
Q 037592 151 TWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPK-----IEHYNC 225 (337)
Q Consensus 151 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~ 225 (337)
.+..+...|.+.|++++|+..|++.++.+. .+...+..+..+|.+.|++++|...++.+++-..-.+. ..+|..
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~ 84 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 344567778888888888888888877533 25667777778888888888888888887643211111 246667
Q ss_pred HHHHHHhcCChHHHHHHHHH
Q 037592 226 MVDLLGRAGLLEEAETLIEN 245 (337)
Q Consensus 226 l~~~~~~~g~~~~A~~~~~~ 245 (337)
+...+...+++++|.+.|++
T Consensus 85 lg~~~~~~~~~~~A~~~~~k 104 (128)
T d1elra_ 85 IGNSYFKEEKYKDAIHFYNK 104 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHH
Confidence 77777788888888888876
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.33 E-value=2.5e-06 Score=61.20 Aligned_cols=63 Identities=10% Similarity=-0.052 Sum_probs=57.9
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhC
Q 037592 254 LWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSG 316 (337)
Q Consensus 254 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 316 (337)
.|..+..+|.+.|++++|+..++++++++|++..+|..++.++...|++++|...|++..+..
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~ 128 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 128 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 455677789999999999999999999999999999999999999999999999999988743
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.23 E-value=5.4e-06 Score=57.76 Aligned_cols=127 Identities=13% Similarity=0.053 Sum_probs=70.7
Q ss_pred HhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhc----------CchhhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 037592 160 AQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHM----------GLIDRGRKHFASMTKEYRIKPKIEHYNCMVDL 229 (337)
Q Consensus 160 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 229 (337)
-+.+.+++|+..|+...+..+ .+...+..+..++... +.+++|+..|+++++-. +.+..+|..++.+
T Consensus 8 ~r~~~fe~A~~~~e~al~~~P-~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~--P~~~~a~~~lG~~ 84 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKSNP-LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID--PKKDEAVWCIGNA 84 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhhCC-cchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc--chhhHHHhhHHHH
Confidence 344556667777766666421 2344555555555432 23355556665555332 3334555555555
Q ss_pred HHhcCChHHHHHHHHHhcCCCchhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHH
Q 037592 230 LGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIR 309 (337)
Q Consensus 230 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 309 (337)
|...|++. ++... ..+.++.|.+.|+++++++|++...+..|... .+|.+++
T Consensus 85 y~~~g~~~------------~~~~~---------~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~-------~ka~~~~ 136 (145)
T d1zu2a1 85 YTSFAFLT------------PDETE---------AKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT-------AKAPQLH 136 (145)
T ss_dssp HHHHHHHC------------CCHHH---------HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH-------HTHHHHH
T ss_pred HHHcccch------------hhHHH---------HHHhHHHhhhhhhcccccCCCHHHHHHHHHHH-------HHHHHHH
Confidence 54433211 01100 11246889999999999999976555444433 5777888
Q ss_pred HHHHHhCC
Q 037592 310 TLMKYSGV 317 (337)
Q Consensus 310 ~~m~~~~~ 317 (337)
.+..+.|+
T Consensus 137 ~e~~k~~~ 144 (145)
T d1zu2a1 137 AEAYKQGL 144 (145)
T ss_dssp HHHHHSSS
T ss_pred HHHHHHhc
Confidence 88777765
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.14 E-value=1.3e-05 Score=51.13 Aligned_cols=75 Identities=20% Similarity=0.104 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHh----c----CCC-chhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHH
Q 037592 220 IEHYNCMVDLLGRAGLLEEAETLIENA----D----CRH-DSSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYV 290 (337)
Q Consensus 220 ~~~~~~l~~~~~~~g~~~~A~~~~~~~----~----~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 290 (337)
...+..++..+.+.|++++|...|++. + ..+ ...++..+..++.+.|++++|+..++++++++|+++.++.
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~ 84 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence 344556778888888888888888763 1 111 2456788889999999999999999999999999888777
Q ss_pred HHHH
Q 037592 291 LLDN 294 (337)
Q Consensus 291 ~l~~ 294 (337)
.+..
T Consensus 85 Nl~~ 88 (95)
T d1tjca_ 85 NLKY 88 (95)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7643
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.08 E-value=6.1e-06 Score=63.66 Aligned_cols=127 Identities=13% Similarity=0.086 Sum_probs=80.3
Q ss_pred HHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCChH
Q 037592 159 FAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPK-IEHYNCMVDLLGRAGLLE 237 (337)
Q Consensus 159 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~ 237 (337)
..+.|++++|+..+++.++..+ -+...+..+...++..|++++|.+.++..++. .|+ ...+..+...+...+..+
T Consensus 6 aL~~G~l~eAl~~l~~al~~~P-~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l---~P~~~~~~~~l~~ll~a~~~~~ 81 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKASP-KDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAAQARK 81 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHhccccH
Confidence 4567888888888888888532 35677777888888888888888888888654 444 444444444444443333
Q ss_pred HHHHHHHHhc--CCCc-hhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchH
Q 037592 238 EAETLIENAD--CRHD-SSLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSY 289 (337)
Q Consensus 238 ~A~~~~~~~~--~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 289 (337)
++..-..... ..|+ ...+......+...|+.++|...+.++.+..|+.+..+
T Consensus 82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~ 136 (264)
T d1zbpa1 82 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLA 136 (264)
T ss_dssp HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEE
T ss_pred HHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCccc
Confidence 3322222211 1222 22233334557778888888888888888877765443
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=98.04 E-value=2.2e-05 Score=55.36 Aligned_cols=89 Identities=18% Similarity=0.015 Sum_probs=60.3
Q ss_pred HHHHHhcCChHHHHHHHHHh----cCCC----------chhHHHHHHHHHhcCCChhHHHHHHHHHHhcCC-------C-
Q 037592 227 VDLLGRAGLLEEAETLIENA----DCRH----------DSSLWEVLLGACTTFRNAHVAERVAKKIMELKP-------D- 284 (337)
Q Consensus 227 ~~~~~~~g~~~~A~~~~~~~----~~~~----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p-------~- 284 (337)
+..+...|++++|+..|++. ...| ....|+.+..+|...|++++|...+++++++.| +
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 33445556666666666542 1111 134566777778888888888888888876332 2
Q ss_pred ---ccchHHHHHHHHHHcCChhhHHHHHHHHHHh
Q 037592 285 ---CHLSYVLLDNVYRAVGRWNDAFKIRTLMKYS 315 (337)
Q Consensus 285 ---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 315 (337)
...++..++.+|...|++++|+..|++..+.
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1235777889999999999999999987764
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.03 E-value=0.00022 Score=51.15 Aligned_cols=55 Identities=9% Similarity=-0.062 Sum_probs=27.3
Q ss_pred HHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 037592 188 IGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEEAETLIE 244 (337)
Q Consensus 188 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 244 (337)
..+...+.+.|++++|+..++.++... +.+...|..++.+|...|+..+|++.|+
T Consensus 71 ~~la~~~~~~g~~~~Al~~~~~al~~~--P~~e~~~~~l~~al~~~Gr~~eAl~~y~ 125 (179)
T d2ff4a2 71 TAKAEAEIACGRASAVIAELEALTFEH--PYREPLWTQLITAYYLSDRQSDALGAYR 125 (179)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCchHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 334444455555555555555554432 3344455555555555555555555544
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.97 E-value=2.3e-05 Score=54.43 Aligned_cols=38 Identities=16% Similarity=0.317 Sum_probs=19.4
Q ss_pred HhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHH
Q 037592 165 GEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASM 210 (337)
Q Consensus 165 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 210 (337)
+++|.+.|++..+ +.|+...+..-+..+ ..|.+++.++
T Consensus 102 ~~~A~~~~~kal~--l~P~~~~~~~~L~~~------~ka~~~~~e~ 139 (145)
T d1zu2a1 102 FDLATQFFQQAVD--EQPDNTHYLKSLEMT------AKAPQLHAEA 139 (145)
T ss_dssp HHHHHHHHHHHHH--HCTTCHHHHHHHHHH------HTHHHHHHHH
T ss_pred HHHhhhhhhcccc--cCCCHHHHHHHHHHH------HHHHHHHHHH
Confidence 4566666666666 445555444333222 3444555554
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.93 E-value=0.0028 Score=50.06 Aligned_cols=237 Identities=11% Similarity=0.038 Sum_probs=136.4
Q ss_pred cCChhhHHHHHHHHHcCCChhHHHHHHHHHhhcCcccHHHHHHHHHhhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHH
Q 037592 49 KKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGLAALRLGKEVHCQYIRRSGCKDVIIESALVDLY 128 (337)
Q Consensus 49 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 128 (337)
.+|..--..++..|.+.|.++.|..+|..+. -|..++..+.+.++++.|.++..+. .+..+|..+...+
T Consensus 11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~-----d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l 79 (336)
T d1b89a_ 11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS-----NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFAC 79 (336)
T ss_dssp CC----------------CTTTHHHHHHHTT-----CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHCCCHHHHHHHHHhCC-----CHHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHH
Confidence 3455555667788889999999999998774 4788889999999999988876533 4567888888888
Q ss_pred HhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHH
Q 037592 129 AKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFA 208 (337)
Q Consensus 129 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 208 (337)
.+.....-|.-+ ......++.....++..|-..|.+++...+++..... -.++...++.++..|++.+. ++ +.+
T Consensus 80 ~~~~e~~la~i~-~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~~-~k---l~e 153 (336)
T d1b89a_ 80 VDGKEFRLAQMC-GLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFKP-QK---MRE 153 (336)
T ss_dssp HHTTCHHHHHHT-TTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTCH-HH---HHH
T ss_pred HhCcHHHHHHHH-HHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhCh-HH---HHH
Confidence 888777655332 2222345555667889999999999999999987643 34566677888888887653 33 333
Q ss_pred HHHHhcCCCCCHH----------HHHHHHHHHHhcCChHHHHHHHHHhcCCCchhHHHHHHHHHhcCCChhHHHHHHHHH
Q 037592 209 SMTKEYRIKPKIE----------HYNCMVDLLGRAGLLEEAETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKI 278 (337)
Q Consensus 209 ~~~~~~~~~~~~~----------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 278 (337)
.+ +..+...+.. .|..++-.|.+.|++++|..++=+ ..++.......+..+.+..+++...++....
T Consensus 154 ~l-~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~--~~~~~~~~~~f~e~~~k~~N~e~~~~~i~~y 230 (336)
T d1b89a_ 154 HL-ELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN--HPTDAWKEGQFKDIITKVANVELYYRAIQFY 230 (336)
T ss_dssp HH-HHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHH--STTTTCCHHHHHHHHHHCSSTHHHHHHHHHH
T ss_pred HH-HhccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHH--cchhhhhHHHHHHHHHccCChHHHHHHHHHH
Confidence 33 2212122221 123344444445555544443322 1223333445566677777777777776666
Q ss_pred HhcCCCccchHHHHHHHHHHcCChhhHHHH
Q 037592 279 MELKPDCHLSYVLLDNVYRAVGRWNDAFKI 308 (337)
Q Consensus 279 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 308 (337)
++..|. ....|+......-+..+..+.
T Consensus 231 L~~~p~---~i~~lL~~v~~~~d~~r~V~~ 257 (336)
T d1b89a_ 231 LEFKPL---LLNDLLMVLSPRLDHTRAVNY 257 (336)
T ss_dssp HHHCGG---GHHHHHHHHGGGCCHHHHHHH
T ss_pred HHcCHH---HHHHHHHHhccCCCHHHHHHH
Confidence 665554 233444444433344333333
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.86 E-value=8.4e-06 Score=62.84 Aligned_cols=50 Identities=22% Similarity=0.252 Sum_probs=25.3
Q ss_pred hhchhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC
Q 037592 95 GLAALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP 145 (337)
Q Consensus 95 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 145 (337)
+.|++++|+..+++.++..+ .+...+..++..++..|++++|...|+...
T Consensus 8 ~~G~l~eAl~~l~~al~~~P-~d~~ar~~La~lL~~~G~~e~A~~~l~~a~ 57 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKASP-KDASLRSSFIELLCIDGDFERADEQLMQSI 57 (264)
T ss_dssp TTTCHHHHHHHHHHHHHTCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34455555555555555443 444555555555555555555555555444
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.83 E-value=0.00017 Score=50.49 Aligned_cols=92 Identities=15% Similarity=0.033 Sum_probs=56.6
Q ss_pred HHhhcCchhhHHHHHHHHHHhcCCCCC----------HHHHHHHHHHHHhcCChHHHHHHHHHh--------cCCCc---
Q 037592 193 ACSHMGLIDRGRKHFASMTKEYRIKPK----------IEHYNCMVDLLGRAGLLEEAETLIENA--------DCRHD--- 251 (337)
Q Consensus 193 ~~~~~~~~~~a~~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~~~--- 251 (337)
.+...|++++|+..|++.+.-..-.|+ ...|+.+..+|...|++++|...+++. ...++
T Consensus 18 ~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~ 97 (156)
T d2hr2a1 18 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGK 97 (156)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccc
Confidence 344455666666666655442221121 245666777777777777777766642 11111
Q ss_pred --hhHHHHHHHHHhcCCChhHHHHHHHHHHhcCCC
Q 037592 252 --SSLWEVLLGACTTFRNAHVAERVAKKIMELKPD 284 (337)
Q Consensus 252 --~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 284 (337)
...+..+..+|...|++++|+..|++++++.|.
T Consensus 98 ~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~ 132 (156)
T d2hr2a1 98 LWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 132 (156)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 224566678899999999999999998885443
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.65 E-value=8.8e-05 Score=47.10 Aligned_cols=65 Identities=9% Similarity=-0.129 Sum_probs=54.2
Q ss_pred hHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCc-------cchHHHHHHHHHHcCChhhHHHHHHHHHHhCC
Q 037592 253 SLWEVLLGACTTFRNAHVAERVAKKIMELKPDC-------HLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGV 317 (337)
Q Consensus 253 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 317 (337)
..+-.+...+.+.|+++.|+..|++++++.|.+ ..++..|+.++.+.|++++|+..+++..+...
T Consensus 6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P 77 (95)
T d1tjca_ 6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP 77 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCc
Confidence 334567788999999999999999999854432 45788999999999999999999999988643
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.77 E-value=0.029 Score=36.34 Aligned_cols=140 Identities=14% Similarity=0.048 Sum_probs=101.0
Q ss_pred HHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHH
Q 037592 159 FAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGLLEE 238 (337)
Q Consensus 159 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 238 (337)
+.-.|..++..+++.+.... .+..-|+.++.-....-+-+...++++.+ |.-.| ...++++..
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~I----G~~FD----------ls~C~Nlk~ 74 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKI----GSYFD----------LDKCQNLKS 74 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHH----GGGSC----------GGGCSCTHH
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHH----hhhcC----------chhhhcHHH
Confidence 44567888888888877663 24455666666556666666666666666 22223 234566666
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHhcCCChhHHHHHHHHHHh-cCCCccchHHHHHHHHHHcCChhhHHHHHHHHHHhCC
Q 037592 239 AETLIENADCRHDSSLWEVLLGACTTFRNAHVAERVAKKIME-LKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMKYSGV 317 (337)
Q Consensus 239 A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 317 (337)
....+-.++. +...++..+....+.|+-+...++++.+.+ -.|+ +.....++.+|.+.|...++.+++.+.-+.|+
T Consensus 75 vv~C~~~~n~--~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~-~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 75 VVECGVINNT--LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVS-ASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHHHHTTC--CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcc--hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 6666555543 345567778888999999999999999776 4455 88899999999999999999999999999998
Q ss_pred c
Q 037592 318 K 318 (337)
Q Consensus 318 ~ 318 (337)
+
T Consensus 152 K 152 (161)
T d1wy6a1 152 K 152 (161)
T ss_dssp H
T ss_pred H
Confidence 6
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.73 E-value=0.0091 Score=39.98 Aligned_cols=108 Identities=13% Similarity=-0.004 Sum_probs=58.3
Q ss_pred chhhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHcccC-ChhhHHHHHHHHHc----CCChhHHHHHHH
Q 037592 2 LKQGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKK-NSVSSSALLQGYCQ----TGDFESVIRIFR 76 (337)
Q Consensus 2 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~g~~~~A~~~~~ 76 (337)
+++|...|.+..+.| +...+..|.. ....+.++|++.+++..+. ++..+..|...|.. ..+.++|+++|+
T Consensus 9 ~~~A~~~~~kaa~~g---~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~ 83 (133)
T d1klxa_ 9 LKKAIQYYVKACELN---EMFGCLSLVS--NSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYS 83 (133)
T ss_dssp HHHHHHHHHHHHHTT---CTTHHHHHHT--CTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCC---Chhhhhhhcc--ccccCHHHHHHHHhhhhcccchhhhhhHHHhhhhccccchhhHHHHHHHh
Confidence 466777777777665 2222233322 2345666777777666433 45555555555443 345666666666
Q ss_pred HHhh-cCcccHHHHHHHHHh----hchhhhhHHHHHHHHHhhC
Q 037592 77 EMEE-IDLFSFGIVLRACAG----LAALRLGKEVHCQYIRRSG 114 (337)
Q Consensus 77 ~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~ 114 (337)
+..+ -+......|...|.. ..+..+|.++|++..+.|.
T Consensus 84 ~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 84 KACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred hhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 6655 333444444444443 2455666666666655543
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.51 E-value=0.027 Score=37.50 Aligned_cols=106 Identities=7% Similarity=-0.116 Sum_probs=53.8
Q ss_pred hhhhhHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCC-CCcHHhHHHHHHHHHh----CCCHhHHHHHH
Q 037592 98 ALRLGKEVHCQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMP-VRNLITWNSMISGFAQ----NGRGEEALRIF 172 (337)
Q Consensus 98 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~----~~~~~~a~~~~ 172 (337)
++++|..+|++..+.|. ...+..|. .....+.++|.+++++.. ..++.....|...|.. ..+.++|.++|
T Consensus 8 d~~~A~~~~~kaa~~g~---~~a~~~l~--~~~~~~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~ 82 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNE---MFGCLSLV--SNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYY 82 (133)
T ss_dssp HHHHHHHHHHHHHHTTC---TTHHHHHH--TCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCC---hhhhhhhc--cccccCHHHHHHHHhhhhcccchhhhhhHHHhhhhccccchhhHHHHHHH
Confidence 45555555555555442 11222222 122345566666665544 2344445555555543 34567777777
Q ss_pred HHHHhcCCCCCHhHHHHHHHHHhh----cCchhhHHHHHHHHH
Q 037592 173 DDMTEGGTKPDHVSFIGVLSACSH----MGLIDRGRKHFASMT 211 (337)
Q Consensus 173 ~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~ 211 (337)
++..+.|. ......|...|.. ..+.++|.++|+...
T Consensus 83 ~~aa~~g~---~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa 122 (133)
T d1klxa_ 83 SKACGLND---QDGCLILGYKQYAGKGVVKNEKQAVKTFEKAC 122 (133)
T ss_dssp HHHHHTTC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred hhhhccCc---chHHHHHHHHHHcCCccCCCHHHHHHHHHHHH
Confidence 77766543 2233334333433 346677777777763
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=96.06 E-value=0.29 Score=40.02 Aligned_cols=260 Identities=11% Similarity=0.000 Sum_probs=107.0
Q ss_pred HHHHHhcCChHHHHHHHHHcccCChhhHHHHHHHHHcCCChhHHHHHHHHHhhcCcccHHHHHHHHHhh-chhhhhHHHH
Q 037592 28 VDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDLFSFGIVLRACAGL-AALRLGKEVH 106 (337)
Q Consensus 28 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~ 106 (337)
+..+.+.++++..+..+..- ..+...-.....+....|+.+.|...+..+-. .. -..+....++
T Consensus 79 l~~L~~~~~w~~~~~~~~~~-p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~--------------~~~~~p~~c~~l~ 143 (450)
T d1qsaa1 79 VNELARREDWRGLLAFSPEK-PGTTEAQCNYYYAKWNTGQSEEAWQGAKELWL--------------TGKSQPNACDKLF 143 (450)
T ss_dssp HHHHHHTTCHHHHHHHCCSC-CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHS--------------CSSCCCTHHHHHH
T ss_pred HHHHHhccCHHHHHHhccCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--------------cCCCCchHHHHHH
Confidence 34445555555444333211 11222223344555555666655555444322 00 0112222333
Q ss_pred HHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHhcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhH
Q 037592 107 CQYIRRSGCKDVIIESALVDLYAKCGCVDFAHQIFLQMPVRNLITWNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVS 186 (337)
Q Consensus 107 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 186 (337)
..+.+.|. .+...+-.-+......|+...|..+...+...........+..... ...+..... . ..++...
T Consensus 144 ~~~~~~~~-lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~---p~~~~~~~~---~--~~~~~~~ 214 (450)
T d1qsaa1 144 SVWRASGK-QDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFAR---T--TGATDFT 214 (450)
T ss_dssp HHHHHTTC-SCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHH---H--SCCCHHH
T ss_pred HHHHhcCC-CCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhC---hHhHHHHHh---c--CCCChhh
Confidence 33444333 4444444455556666777777777766654333333444433322 222222111 1 1112222
Q ss_pred HHHHHHHHhh--cCchhhHHHHHHHHHHhcCCCCCHHHHHHH----HHHHHhcCChHHHHHHHHHhc-CCCchhHHHHHH
Q 037592 187 FIGVLSACSH--MGLIDRGRKHFASMTKEYRIKPKIEHYNCM----VDLLGRAGLLEEAETLIENAD-CRHDSSLWEVLL 259 (337)
Q Consensus 187 ~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~ 259 (337)
...+..++.+ ..+.+.|...+..........++ .+..+ ...+...+..+.+...+.... ...+.....-.+
T Consensus 215 ~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~ 292 (450)
T d1qsaa1 215 RQMAAVAFASVARQDAENARLMIPSLAQAQQLNED--QIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRV 292 (450)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHH--HHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHH
T ss_pred hHHHHHHHHHHhccChhHHHHHHHhhhhcccccHH--HHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHH
Confidence 2222222222 23455555555555333222211 11111 112223344555555554321 122222222233
Q ss_pred HHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHHHHH
Q 037592 260 GACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRTLMK 313 (337)
Q Consensus 260 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 313 (337)
......+++..+...++.+.......+....=++.++...|+.++|...|....
T Consensus 293 ~~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a 346 (450)
T d1qsaa1 293 RMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLM 346 (450)
T ss_dssp HHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHh
Confidence 333444566666655554432111222333445566666666666666666543
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=96.01 E-value=0.3 Score=39.85 Aligned_cols=289 Identities=10% Similarity=-0.035 Sum_probs=147.5
Q ss_pred hhHHHHHHHHhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHcccCChhhHHHHHHHHHcCCChhHHHHHHHHHhhcCc
Q 037592 4 QGKEVHAKVITLGLCGNVVVESSLVDMYGKCGLVDESHRVFDKMLKKNSVSSSALLQGYCQTGDFESVIRIFREMEEIDL 83 (337)
Q Consensus 4 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 83 (337)
..-.+|..+.+.| .++...+-.-+......|++..|..+...+...........+..... ...+........ .+.
T Consensus 138 ~c~~l~~~~~~~~-~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~---p~~~~~~~~~~~-~~~ 212 (450)
T d1qsaa1 138 ACDKLFSVWRASG-KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFARTTG-ATD 212 (450)
T ss_dssp HHHHHHHHHHHTT-CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHHHSC-CCH
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhC---hHhHHHHHhcCC-CCh
Confidence 3445566666555 34444444455666667777777777776654444444444444322 222322222111 222
Q ss_pred ccHHHHHHHHHh--hchhhhhHHHHHHHHHhhCCCCchhHHHHH----HHHHhcCCHHHHHHHHhcCC--CCcHHhHHHH
Q 037592 84 FSFGIVLRACAG--LAALRLGKEVHCQYIRRSGCKDVIIESALV----DLYAKCGCVDFAHQIFLQMP--VRNLITWNSM 155 (337)
Q Consensus 84 ~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l 155 (337)
.....+..++.+ ..+.+.+..++........ .+..-+..+- ......+..+.+...+.... ..+.....-.
T Consensus 213 ~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~ 291 (450)
T d1qsaa1 213 FTRQMAAVAFASVARQDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERR 291 (450)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred hhhHHHHHHHHHHhccChhHHHHHHHhhhhccc-ccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHH
Confidence 222222333322 2456667777766655433 2222222222 22223455566666554433 2233333334
Q ss_pred HHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 037592 156 ISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMVDLLGRAGL 235 (337)
Q Consensus 156 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 235 (337)
+......+++..+...+..|... ........--+..++...|+.+.|...|..+. . .++ .|..|... +.|.
T Consensus 292 ~~~al~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a-~---~~~--fYG~LAa~--~Lg~ 362 (450)
T d1qsaa1 292 VRMALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLM-Q---QRG--FYPMVAAQ--RIGE 362 (450)
T ss_dssp HHHHHHHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH-T---SCS--HHHHHHHH--HTTC
T ss_pred HHHHHHcCChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHh-c---CCC--hHHHHHHH--HcCC
Confidence 44455667888888887776432 11123333456677778888888888888773 2 233 33333211 1121
Q ss_pred -hHHHHHHHHHhcCCCchh-H---HHHHHHHHhcCCChhHHHHHHHHHHhcCCCccchHHHHHHHHHHcCChhhHHHHHH
Q 037592 236 -LEEAETLIENADCRHDSS-L---WEVLLGACTTFRNAHVAERVAKKIMELKPDCHLSYVLLDNVYRAVGRWNDAFKIRT 310 (337)
Q Consensus 236 -~~~A~~~~~~~~~~~~~~-~---~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (337)
+.-. .......+... . -..-+..+...|....|...+..+.+..+ +.....++....+.|.++.|+....
T Consensus 363 ~~~~~---~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~~--~~~~~~la~lA~~~g~~~~aI~a~~ 437 (450)
T d1qsaa1 363 EYELK---IDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKS--KTEQAQLARYAFNNQWWDLSVQATI 437 (450)
T ss_dssp CCCCC---CCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCC---cCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCCC--HHHHHHHHHHHHHCCChhHHHHHHH
Confidence 1000 00000011100 0 11224557788999999999988876432 4466677888889999999998766
Q ss_pred HH
Q 037592 311 LM 312 (337)
Q Consensus 311 ~m 312 (337)
+.
T Consensus 438 ~~ 439 (450)
T d1qsaa1 438 AG 439 (450)
T ss_dssp HT
T ss_pred HH
Confidence 54
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.75 E-value=0.093 Score=34.02 Aligned_cols=72 Identities=10% Similarity=0.009 Sum_probs=48.3
Q ss_pred CCCHHHHHHHHHHHHhcC---ChHHHHHHHHHh-cCCC-ch-hHHHHHHHHHhcCCChhHHHHHHHHHHhcCCCccch
Q 037592 217 KPKIEHYNCMVDLLGRAG---LLEEAETLIENA-DCRH-DS-SLWEVLLGACTTFRNAHVAERVAKKIMELKPDCHLS 288 (337)
Q Consensus 217 ~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~~-~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 288 (337)
.++..+.....-++.+.. +.++++.+++++ ...| +. ..+..+.-+|.+.|+++.|.+.++.+++++|++..+
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA 109 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 109 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHH
Confidence 345556666666666554 456777777764 2233 22 345566677888888888888888888888887544
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.50 E-value=0.056 Score=35.12 Aligned_cols=69 Identities=6% Similarity=-0.085 Sum_probs=52.5
Q ss_pred CchhHHHHHHHHHhcC---CChhHHHHHHHHHHhcCCCcc-chHHHHHHHHHHcCChhhHHHHHHHHHHhCCc
Q 037592 250 HDSSLWEVLLGACTTF---RNAHVAERVAKKIMELKPDCH-LSYVLLDNVYRAVGRWNDAFKIRTLMKYSGVK 318 (337)
Q Consensus 250 ~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 318 (337)
++..|--...-++.++ .+.+.++.+++++.+.+|.+. .++..|+.+|.+.|++++|.+.++.+.+....
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~ 105 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 105 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4444433344444433 457799999999999888754 68889999999999999999999999886543
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.21 E-value=0.2 Score=32.34 Aligned_cols=61 Identities=10% Similarity=0.130 Sum_probs=37.1
Q ss_pred HHHHHHHHHhCCCHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHh
Q 037592 152 WNSMISGFAQNGRGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKE 213 (337)
Q Consensus 152 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 213 (337)
+...+.....+|+-++-.++++.+.+. -.|++.....+..+|.+.|...++-.++.++.+.
T Consensus 89 vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~ 149 (161)
T d1wy6a1 89 VNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKK 149 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence 344455566667777766676665553 3455555666666777777777777777666443
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=90.86 E-value=1 Score=27.43 Aligned_cols=62 Identities=13% Similarity=0.181 Sum_probs=44.8
Q ss_pred CHhHHHHHHHHHHhcCCCCCHhHHHHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 037592 164 RGEEALRIFDDMTEGGTKPDHVSFIGVLSACSHMGLIDRGRKHFASMTKEYRIKPKIEHYNCMV 227 (337)
Q Consensus 164 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 227 (337)
+.-++.+-+..+......|+.....+.+.+|.+.+++..|.++++.+..+.| ++...|..++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~--~~k~~y~yil 82 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVI 82 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CcHHHHHHHH
Confidence 4456666677777777888888888888888888999999988888744333 3344555554
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=90.30 E-value=0.89 Score=27.66 Aligned_cols=31 Identities=23% Similarity=0.354 Sum_probs=15.2
Q ss_pred CChhhHHHHHHHHHcCCChhHHHHHHHHHhh
Q 037592 50 KNSVSSSALLQGYCQTGDFESVIRIFREMEE 80 (337)
Q Consensus 50 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 80 (337)
|++....+.+.+|-+.+++..|+++++..+.
T Consensus 39 PeP~Ii~aALrAcRRvND~alAVR~lE~vK~ 69 (105)
T d1v54e_ 39 PEPKIIDAALRACRRLNDFASAVRILEVVKD 69 (105)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444444455555555555555555554443
|