Citrus Sinensis ID: 037598

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360
QNIESGAVGIEQTQGKDLNDWLPITASRKAKWWYSAFHNVTAMVGAGVLGLPFAFSQLGWGAGFAAIFGSWAITFYSLWQLVELHEVVPGKRFDRYPELGEHCFGPRFGYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHNVENVRLTYFILIFACLHLVLSQTPNFNSLKGVSLLAAVMSICYSMVALITSIKKGIHHRPESYGVRSHTEVGKAFDFLNGLGTVAFAFAGHSVVLEIQATIPSTPEVPSKKPMWKGVVVAYVIVAFCYLSVGISGYWAFGQYVEDDVLISLRKPAWLIAIANFMVFFHVVGSYQVFAMPVFDMIESYLVQHMRFTPGLLLRLVARSSYVGKFRH
cccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHEEEEEEEEEcccccccccccccccccccccccccHHHHHHHHHccccccHHHHHHHccccccccccccccEEEEHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccccccccHHHHHHHHHHHHcccc
ccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHcccccEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEEEHHHHHccc
qniesgavgieqtqgkdlndwlpitasrKAKWWYSAFHNVTAMVGAGvlglpfafsqlgwgagFAAIFGSWAITFYSLWQLVElhevvpgkrfdrypelgehcfgprfgywfvmpQQMLVQIATDIVYMVTGGKSLMKFVELLDHNVENVRLTYFILIFACLHLVLsqtpnfnslkGVSLLAAVMSICYSMVALITSIKkgihhrpesygvrshtevgkafDFLNGLGTVAFAFAGHSVVLEIQatipstpevpskkpmwkGVVVAYVIVAFCYLSVGISGYWAFGQYVEDDVLISLRKPAWLIAIANFMVFFHVVGSYQVFAMPVFDMIESYLVQHMRFTPGLLLRLVARSSYVGKFRH
qniesgavgieqtqgkdlndwlPITASRKAKWWYSAFHNVTAMVGAGVLGLPFAFSQLGWGAGFAAIFGSWAITFYSLWQLVELHEVVPGKRFDRYPELGEHCFGPRFGYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHNVENVRLTYFILIFACLHLVLSQTPNFNSLKGVSLLAAVMSICYSMVALITSIKKGIHHRPESYGVRSHTEVGKAFDFLNGLGTVAFAFAGHSVVLEIQATipstpevpskkpMWKGVVVAYVIVAFCYLSVGISGYWAFGQYVEDDVLISLRKPAWLIAIANFMVFFHVVGSYQVFAMPVFDMIESYLVQHMRFTPGLLLRLVARSSYVGKFRH
QNIESGAVGIEQTQGKDLNDWLPITASRKAKWWYSAFHNVTAMVGAGVLGLPFAFSQLGWGAGFAAIFGSWAITFYSLWQLVELHEVVPGKRFDRYPELGEHCFGPRFGYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHNVENVRLTYFILIFACLHLVLSQTPNFNSLKGVSLLAAVMSICYSMVALITSIKKGIHHRPESYGVRSHTEVGKAFDFLNGLGTVAFAFAGHSVVLEIQATIPSTPEVPSKKPMWKGVVVAYVIVAFCYLSVGISGYWAFGQYVEDDVLISLRKPAWLIAIANFMVFFHVVGSYQVFAMPVFDMIESYLVQHMRFTPGLLLRLVARSSYVGKFRH
****************DLNDWLPITASRKAKWWYSAFHNVTAMVGAGVLGLPFAFSQLGWGAGFAAIFGSWAITFYSLWQLVELHEVVPGKRFDRYPELGEHCFGPRFGYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHNVENVRLTYFILIFACLHLVLSQTPNFNSLKGVSLLAAVMSICYSMVALITSIKKGIHHRPESYGVRSHTEVGKAFDFLNGLGTVAFAFAGHSVVLEIQATIPST*****KKPMWKGVVVAYVIVAFCYLSVGISGYWAFGQYVEDDVLISLRKPAWLIAIANFMVFFHVVGSYQVFAMPVFDMIESYLVQHMRFTPGLLLRLVARSSYVG****
******************************KWWYSAFHNVTAMVGAGVLGLPFAFSQLGWGAGFAAIFGSWAITFYSLWQLVELHEVVPGKRFDRYPELGEHCFGPRFGYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHNVENVRLTYFILIFACLHLVLSQTPNFNSLKGVSLLAAVMSICYSMVALITSIKKGIHHRPESYGVRSHTEVGKAFDFLNGLGTVAFAFAGHSVVLEIQATIPS*P**PSKKPMWKGVVVAYVIVAFCYLSVGISGYWAFGQYVEDDVLISLRKPAWLIAIANFMVFFHVVGSYQVFAMPVFDMIESYLVQHMRFTPGLLLRLVARSSYVGKFRH
QNIESGAVGIEQTQGKDLNDWLPITASRKAKWWYSAFHNVTAMVGAGVLGLPFAFSQLGWGAGFAAIFGSWAITFYSLWQLVELHEVVPGKRFDRYPELGEHCFGPRFGYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHNVENVRLTYFILIFACLHLVLSQTPNFNSLKGVSLLAAVMSICYSMVALITSIKKGIHHRPESYGVRSHTEVGKAFDFLNGLGTVAFAFAGHSVVLEIQATIPSTPEVPSKKPMWKGVVVAYVIVAFCYLSVGISGYWAFGQYVEDDVLISLRKPAWLIAIANFMVFFHVVGSYQVFAMPVFDMIESYLVQHMRFTPGLLLRLVARSSYVGKFRH
******************NDWLPITASRKAKWWYSAFHNVTAMVGAGVLGLPFAFSQLGWGAGFAAIFGSWAITFYSLWQLVELHEVVPGKRFDRYPELGEHCFGPRFGYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHNVENVRLTYFILIFACLHLVLSQTPNFNSLKGVSLLAAVMSICYSMVALITSIKKGIHHRPESYGVRSHTEVGKAFDFLNGLGTVAFAFAGHSVVLEIQATIPSTPEVPSKKPMWKGVVVAYVIVAFCYLSVGISGYWAFGQYVEDDVLISLRKPAWLIAIANFMVFFHVVGSYQVFAMPVFDMIESYLVQHMRFTPGLLLRLVARSSYVGKFRH
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHoooo
oooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
QNIESGAVGIEQTQGKDLNDWLPITASRKAKWWYSAFHNVTAMVGAGVLGLPFAFSQLGWGAGFAAIFGSWAITFYSLWQLVELHEVVPGKRFDRYPELGEHCFGPRFGYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHNVENVRLTYFILIFACLHLVLSQTPNFNSLKGVSLLAAVMSICYSMVALITSIKKGIHHRPESYGVRSHTEVGKAFDFLNGLGTVAFAFAGHSVVLEIQATIPSTPEVPSKKPMWKGVVVAYVIVAFCYLSVGISGYWAFGQYVEDDVLISLRKPAWLIAIANFMVFFHVVGSYQVFAMPVFDMIESYLVQHMRFTPGLLLRLVARSSYVGKFRH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query360 2.2.26 [Sep-21-2011]
Q9C9J0448 Lysine histidine transpor yes no 0.944 0.758 0.752 1e-146
Q9LRB5441 Lysine histidine transpor no no 0.980 0.800 0.587 1e-125
Q9FKS8446 Lysine histidine transpor no no 0.961 0.775 0.608 1e-125
Q9SR44441 Lysine histidine transpor no no 0.977 0.798 0.597 1e-121
Q9C733453 Lysine histidine transpor no no 0.958 0.761 0.580 1e-113
O22719451 Lysine histidine transpor no no 0.955 0.762 0.544 1e-108
Q9SS86455 Lysine histidine transpor no no 0.961 0.760 0.548 1e-106
Q9C6M2440 Lysine histidine transpor no no 0.955 0.781 0.538 1e-105
Q9SX98519 Lysine histidine transpor no no 0.877 0.608 0.365 3e-56
Q84WE9478 Lysine histidine transpor no no 0.919 0.692 0.305 6e-43
>sp|Q9C9J0|LHTL5_ARATH Lysine histidine transporter-like 5 OS=Arabidopsis thaliana GN=At1g71680 PE=2 SV=2 Back     alignment and function desciption
 Score =  517 bits (1331), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 256/340 (75%), Positives = 286/340 (84%)

Query: 17  DLNDWLPITASRKAKWWYSAFHNVTAMVGAGVLGLPFAFSQLGWGAGFAAIFGSWAITFY 76
           D NDWLP+TASR+AKW+YSAFHNVTAMVGAGVLGLPFA SQLGWG G  AI  SWAITFY
Sbjct: 24  DYNDWLPVTASREAKWYYSAFHNVTAMVGAGVLGLPFAMSQLGWGPGLVAIIMSWAITFY 83

Query: 77  SLWQLVELHEVVPGKRFDRYPELGEHCFGPRFGYWFVMPQQMLVQIATDIVYMVTGGKSL 136
           SLWQ+V+LHE VPGKR DRYPELG+  FGP+ GYW VMPQQ+LVQIA+DIVY VTGGKSL
Sbjct: 84  SLWQMVQLHEAVPGKRLDRYPELGQEAFGPKLGYWIVMPQQLLVQIASDIVYNVTGGKSL 143

Query: 137 MKFVELLDHNVENVRLTYFILIFACLHLVLSQTPNFNSLKGVSLLAAVMSICYSMVALIT 196
            KFVELL  N+E++R TY+IL FA L LVLSQ+P+FNS+K VSLLAA+MS  YSM+A + 
Sbjct: 144 KKFVELLFPNLEHIRQTYYILGFAALQLVLSQSPDFNSIKIVSLLAALMSFLYSMIASVA 203

Query: 197 SIKKGIHHRPESYGVRSHTEVGKAFDFLNGLGTVAFAFAGHSVVLEIQATIPSTPEVPSK 256
           SI KG  HRP +YGVR  T     FD  NG+GT+AFAFAGHSVVLEIQATIPSTPEVPSK
Sbjct: 204 SIAKGTEHRPSTYGVRGDTVASMVFDAFNGIGTIAFAFAGHSVVLEIQATIPSTPEVPSK 263

Query: 257 KPMWKGVVVAYVIVAFCYLSVGISGYWAFGQYVEDDVLISLRKPAWLIAIANFMVFFHVV 316
           KPMWKGVVVAY+IV  CYL V ISGYWAFG +VEDDVLISL +PAWLIA ANFMVF HV+
Sbjct: 264 KPMWKGVVVAYIIVIICYLFVAISGYWAFGAHVEDDVLISLERPAWLIAAANFMVFIHVI 323

Query: 317 GSYQVFAMPVFDMIESYLVQHMRFTPGLLLRLVARSSYVG 356
           GSYQVFAM VFD IESYLV+ ++FTP   LRLVARS+YV 
Sbjct: 324 GSYQVFAMIVFDTIESYLVKTLKFTPSTTLRLVARSTYVA 363
Amino acid transporter.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9LRB5|LHT2_ARATH Lysine histidine transporter 2 OS=Arabidopsis thaliana GN=LHT2 PE=1 SV=1 Back     alignment and function description
>sp|Q9FKS8|LHT1_ARATH Lysine histidine transporter 1 OS=Arabidopsis thaliana GN=LHT1 PE=1 SV=1 Back     alignment and function description
>sp|Q9SR44|LHTL2_ARATH Lysine histidine transporter-like 2 OS=Arabidopsis thaliana GN=At1g67640 PE=2 SV=1 Back     alignment and function description
>sp|Q9C733|LHTL1_ARATH Lysine histidine transporter-like 1 OS=Arabidopsis thaliana GN=At1g48640 PE=3 SV=2 Back     alignment and function description
>sp|O22719|LHTL3_ARATH Lysine histidine transporter-like 3 OS=Arabidopsis thaliana GN=At1g61270 PE=3 SV=2 Back     alignment and function description
>sp|Q9SS86|LHTL4_ARATH Lysine histidine transporter-like 4 OS=Arabidopsis thaliana GN=At3g01760 PE=3 SV=2 Back     alignment and function description
>sp|Q9C6M2|LHTL6_ARATH Lysine histidine transporter-like 6 OS=Arabidopsis thaliana GN=At1g25530 PE=2 SV=1 Back     alignment and function description
>sp|Q9SX98|LHTL8_ARATH Lysine histidine transporter-like 8 OS=Arabidopsis thaliana GN=AATL1 PE=1 SV=1 Back     alignment and function description
>sp|Q84WE9|LHTL7_ARATH Lysine histidine transporter-like 7 OS=Arabidopsis thaliana GN=At4g35180 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query360
297801636438 hypothetical protein ARALYDRAFT_916331 [ 0.975 0.801 0.725 1e-149
297838995451 amino acid permease [Arabidopsis lyrata 0.944 0.753 0.75 1e-148
145337417448 Lysine histidine transporter-like 5 [Ara 0.944 0.758 0.752 1e-144
7239491450 Contains similarity to the lysine and hi 0.944 0.755 0.752 1e-144
12323722434 putative amino acid permease; 31199-2947 0.944 0.783 0.752 1e-144
449490261 465 PREDICTED: lysine histidine transporter- 0.955 0.739 0.691 1e-134
449442120435 PREDICTED: lysine histidine transporter- 0.955 0.790 0.691 1e-134
357455549 469 Lysine/histidine transporter [Medicago t 0.944 0.724 0.670 1e-134
115474609447 Os08g0127100 [Oryza sativa Japonica Grou 0.958 0.771 0.637 1e-129
30409136441 histidine amino acid transporter [Oryza 0.958 0.782 0.637 1e-129
>gi|297801636|ref|XP_002868702.1| hypothetical protein ARALYDRAFT_916331 [Arabidopsis lyrata subsp. lyrata] gi|297314538|gb|EFH44961.1| hypothetical protein ARALYDRAFT_916331 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
 Score =  534 bits (1375), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 256/353 (72%), Positives = 292/353 (82%), Gaps = 2/353 (0%)

Query: 4   ESGAVGIEQTQGKDLNDWLPITASRKAKWWYSAFHNVTAMVGAGVLGLPFAFSQLGWGAG 63
           E+  + I+Q Q +DLN+WLP+TASRKAKWWYSAFHNVTAMVGAGVLGLPFA SQLGW +G
Sbjct: 3   ENSTMEIDQ-QNEDLNNWLPVTASRKAKWWYSAFHNVTAMVGAGVLGLPFAISQLGWVSG 61

Query: 64  FAAIFGSWAITFYSLWQLVELHEVVPGKRFDRYPELGEHCFGPRFGYWFVMPQQMLVQIA 123
             A+ GSW ITFY+LWQLVELHE VPGKRFDRYPELG+H FGP+ GYW VMPQQMLVQ+ 
Sbjct: 62  IVAVLGSWVITFYTLWQLVELHEAVPGKRFDRYPELGQHAFGPKLGYWIVMPQQMLVQVG 121

Query: 124 TDIVYMVTGGKSLMKFVELLDHNVENVRLTYFILIFACLHLVLSQTPNFNSLKGVSLLAA 183
           TDIVY VTGGKSL K +ELL  +   +R T +ILIF  + L LSQ PNFNSLKG+SLLAA
Sbjct: 122 TDIVYNVTGGKSLKKAIELLIPSFA-MRNTCYILIFTAIQLSLSQIPNFNSLKGLSLLAA 180

Query: 184 VMSICYSMVALITSIKKGIHHRPESYGVRSHTEVGKAFDFLNGLGTVAFAFAGHSVVLEI 243
           VMS+CYSM+A + S  +G  H P SYG+RS   V  AFD +N LGTVAFAFAGHSVVLEI
Sbjct: 181 VMSVCYSMIAFVASTVEGAQHHPASYGIRSQYSVDIAFDVMNALGTVAFAFAGHSVVLEI 240

Query: 244 QATIPSTPEVPSKKPMWKGVVVAYVIVAFCYLSVGISGYWAFGQYVEDDVLISLRKPAWL 303
           QATIPSTPEVPSKKP WKGVVVAY IV  CYL+V ISG+WAFG  VEDD+LISL+KP WL
Sbjct: 241 QATIPSTPEVPSKKPTWKGVVVAYAIVLLCYLTVAISGFWAFGNLVEDDILISLQKPNWL 300

Query: 304 IAIANFMVFFHVVGSYQVFAMPVFDMIESYLVQHMRFTPGLLLRLVARSSYVG 356
           IA+ANFMVF HVVGSYQVFAMPVFD IES LV++++FTP + LR+V R+SYV 
Sbjct: 301 IAVANFMVFLHVVGSYQVFAMPVFDGIESCLVKNLKFTPSICLRIVGRTSYVA 353

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297838995|ref|XP_002887379.1| amino acid permease [Arabidopsis lyrata subsp. lyrata] gi|297333220|gb|EFH63638.1| amino acid permease [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|145337417|ref|NP_565019.2| Lysine histidine transporter-like 5 [Arabidopsis thaliana] gi|263432201|sp|Q9C9J0.2|LHTL5_ARATH RecName: Full=Lysine histidine transporter-like 5 gi|332197091|gb|AEE35212.1| Lysine histidine transporter-like 5 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|7239491|gb|AAF43217.1|AC012654_1 Contains similarity to the lysine and histidine specific transporter gene from A. thaliana gb|U39782; It is a member of the transmembrane amino acid transporter protein family PF|01490 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|12323722|gb|AAG51818.1|AC016163_7 putative amino acid permease; 31199-29477 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449490261|ref|XP_004158554.1| PREDICTED: lysine histidine transporter-like 5-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449442120|ref|XP_004138830.1| PREDICTED: lysine histidine transporter-like 5-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357455549|ref|XP_003598055.1| Lysine/histidine transporter [Medicago truncatula] gi|355487103|gb|AES68306.1| Lysine/histidine transporter [Medicago truncatula] Back     alignment and taxonomy information
>gi|115474609|ref|NP_001060901.1| Os08g0127100 [Oryza sativa Japonica Group] gi|42407710|dbj|BAD08858.1| putative histidine amino acid transporter [Oryza sativa Japonica Group] gi|113622870|dbj|BAF22815.1| Os08g0127100 [Oryza sativa Japonica Group] gi|215694479|dbj|BAG89420.1| unnamed protein product [Oryza sativa Japonica Group] gi|215716979|dbj|BAG95342.1| unnamed protein product [Oryza sativa Japonica Group] gi|218200418|gb|EEC82845.1| hypothetical protein OsI_27668 [Oryza sativa Indica Group] gi|222639848|gb|EEE67980.1| hypothetical protein OsJ_25900 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|30409136|emb|CAD89802.1| histidine amino acid transporter [Oryza sativa Indica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query360
TAIR|locus:2013056448 AT1G71680 [Arabidopsis thalian 0.941 0.756 0.755 7.2e-139
UNIPROTKB|Q85V22441 ht "Histidine amino acid trans 0.947 0.773 0.645 5.7e-123
TAIR|locus:2154815446 LHT1 "lysine histidine transpo 0.941 0.760 0.620 3e-117
TAIR|locus:2024071441 LHT2 "lysine histidine transpo 0.977 0.798 0.588 7.9e-117
TAIR|locus:2008605441 AT1G67640 "AT1G67640" [Arabido 0.95 0.775 0.612 1e-116
TAIR|locus:2008154453 AT1G48640 [Arabidopsis thalian 0.955 0.759 0.582 1.4e-110
TAIR|locus:2008435451 AT1G61270 [Arabidopsis thalian 0.952 0.760 0.546 2.3e-101
TAIR|locus:2031215440 AT1G25530 [Arabidopsis thalian 0.952 0.779 0.540 1.7e-98
TAIR|locus:2015383519 AT1G47670 [Arabidopsis thalian 0.858 0.595 0.387 5.3e-56
TAIR|locus:2132816478 LHT7 "LYS/HIS transporter 7" [ 0.916 0.690 0.315 1.7e-43
TAIR|locus:2013056 AT1G71680 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1359 (483.5 bits), Expect = 7.2e-139, P = 7.2e-139
 Identities = 256/339 (75%), Positives = 286/339 (84%)

Query:    17 DLNDWLPITASRKAKWWYSAFHNVTAMVGAGVLGLPFAFSQLGWGAGFAAIFGSWAITFY 76
             D NDWLP+TASR+AKW+YSAFHNVTAMVGAGVLGLPFA SQLGWG G  AI  SWAITFY
Sbjct:    24 DYNDWLPVTASREAKWYYSAFHNVTAMVGAGVLGLPFAMSQLGWGPGLVAIIMSWAITFY 83

Query:    77 SLWQLVELHEVVPGKRFDRYPELGEHCFGPRFGYWFVMPQQMLVQIATDIVYMVTGGKSL 136
             SLWQ+V+LHE VPGKR DRYPELG+  FGP+ GYW VMPQQ+LVQIA+DIVY VTGGKSL
Sbjct:    84 SLWQMVQLHEAVPGKRLDRYPELGQEAFGPKLGYWIVMPQQLLVQIASDIVYNVTGGKSL 143

Query:   137 MKFVELLDHNVENVRLTYFILIFACLHLVLSQTPNFNSLKGVSLLAAVMSICYSMVALIT 196
              KFVELL  N+E++R TY+IL FA L LVLSQ+P+FNS+K VSLLAA+MS  YSM+A + 
Sbjct:   144 KKFVELLFPNLEHIRQTYYILGFAALQLVLSQSPDFNSIKIVSLLAALMSFLYSMIASVA 203

Query:   197 SIKKGIHHRPESYGVRSHTEVGKAFDFLNGLGTVAFAFAGHSVVLEIQATIPSTPEVPSK 256
             SI KG  HRP +YGVR  T     FD  NG+GT+AFAFAGHSVVLEIQATIPSTPEVPSK
Sbjct:   204 SIAKGTEHRPSTYGVRGDTVASMVFDAFNGIGTIAFAFAGHSVVLEIQATIPSTPEVPSK 263

Query:   257 KPMWKGVVVAYVIVAFCYLSVGISGYWAFGQYVEDDVLISLRKPAWLIAIANFMVFFHVV 316
             KPMWKGVVVAY+IV  CYL V ISGYWAFG +VEDDVLISL +PAWLIA ANFMVF HV+
Sbjct:   264 KPMWKGVVVAYIIVIICYLFVAISGYWAFGAHVEDDVLISLERPAWLIAAANFMVFIHVI 323

Query:   317 GSYQVFAMPVFDMIESYLVQHMRFTPGLLLRLVARSSYV 355
             GSYQVFAM VFD IESYLV+ ++FTP   LRLVARS+YV
Sbjct:   324 GSYQVFAMIVFDTIESYLVKTLKFTPSTTLRLVARSTYV 362
GO:0005886 "plasma membrane" evidence=ISM
GO:0006865 "amino acid transport" evidence=ISS
GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS
GO:0016020 "membrane" evidence=ISS
UNIPROTKB|Q85V22 ht "Histidine amino acid transporter" [Oryza sativa Indica Group (taxid:39946)] Back     alignment and assigned GO terms
TAIR|locus:2154815 LHT1 "lysine histidine transporter 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2024071 LHT2 "lysine histidine transporter 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008605 AT1G67640 "AT1G67640" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008154 AT1G48640 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008435 AT1G61270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031215 AT1G25530 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2015383 AT1G47670 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2132816 LHT7 "LYS/HIS transporter 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9C9J0LHTL5_ARATHNo assigned EC number0.75290.94440.7589yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
scaffold_704073.1
annotation not avaliable (438 aa)
(Arabidopsis lyrata)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query360
pfam01490406 pfam01490, Aa_trans, Transmembrane amino acid tran 7e-81
COG0814415 COG0814, SdaC, Amino acid permeases [Amino acid tr 1e-16
PLN03074 473 PLN03074, PLN03074, auxin influx permease; Provisi 2e-05
PTZ00206467 PTZ00206, PTZ00206, amino acid transporter; Provis 0.001
>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein Back     alignment and domain information 
 Score =  252 bits (645), Expect = 7e-81
 Identities = 109/335 (32%), Positives = 171/335 (51%), Gaps = 14/335 (4%)

Query: 28  RKAKWWYSAFHNVTAMVGAGVLGLPFAFSQLGWGAGFAAIFGSWAITFYSLWQLVELHEV 87
                W + F+ + A++GAGVL LP+AF QLGW  G   +     I+ Y+L  LV+  + 
Sbjct: 1   GTISAWQAVFNLIKAIIGAGVLSLPYAFKQLGWIPGLILLVIVGLISLYTLHLLVQCSKY 60

Query: 88  VP---GKRFDRYPELGEHCFGPRFGYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLD 144
           V    GKR   Y +LG   FGP+ G   ++   ++      I Y++  G +L    +   
Sbjct: 61  VDKVKGKRRKSYGDLGYRLFGPK-GKLLILFAILVNLFGVCISYLIFAGDNLPAIFDSFF 119

Query: 145 HNVENVRLTYFILIFACLHLVLSQTPNFNSLKGVSLLAAVMSICYSMVALITSIKKGIHH 204
                + L YFI+IF  + + LS  PN ++L  +SL+AAV S+   +V L+ S+ +    
Sbjct: 120 DTCH-ISLVYFIIIFGLIFIPLSFIPNLSALSILSLVAAVSSLY--IVILVLSVAELGVL 176

Query: 205 RPESYGVRSHTEVGKAFDFLNGLGTVAFAFAGHSVVLEIQATIPSTPEVPSKKPMWKGVV 264
             +  G        K       +G + FAF GH+V+L IQ T+ S  +    K M K ++
Sbjct: 177 TAQGVGSLGAKTNIKLARLFLAIGIIVFAFEGHAVLLPIQNTMKSPSK---FKAMTKVLL 233

Query: 265 VAYVIVAFCYLSVGISGYWAFGQYVEDDVLISLRKPAWLIAIANFMVFFHVVGSYQVFAM 324
            A +IV   Y+ VG+ GY AFG  V+ ++L++L K  WLI IAN ++  H++ SY + A 
Sbjct: 234 TAIIIVTVLYILVGLVGYLAFGNNVKGNILLNLPKSDWLIDIANLLLVLHLLLSYPLQAF 293

Query: 325 PVFDMIESYLVQ----HMRFTPGLLLRLVARSSYV 355
           P+  ++E+ L +            LLR+V RS  V
Sbjct: 294 PIRQIVENLLFRKGASGKHNPKSKLLRVVIRSGLV 328

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406
>gnl|CDD|223884 COG0814, SdaC, Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|215559 PLN03074, PLN03074, auxin influx permease; Provisional Back     alignment and domain information
>gnl|CDD|240313 PTZ00206, PTZ00206, amino acid transporter; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 360
KOG1303437 consensus Amino acid transporters [Amino acid tran 100.0
PTZ00206467 amino acid transporter; Provisional 100.0
KOG1304449 consensus Amino acid transporters [Amino acid tran 100.0
PF01490409 Aa_trans: Transmembrane amino acid transporter pro 100.0
PLN03074 473 auxin influx permease; Provisional 100.0
KOG1305411 consensus Amino acid transporter protein [Amino ac 100.0
COG0814415 SdaC Amino acid permeases [Amino acid transport an 99.96
KOG4303524 consensus Vesicular inhibitory amino acid transpor 99.96
PRK09664415 tryptophan permease TnaB; Provisional 99.86
PRK10483414 tryptophan permease; Provisional 99.86
TIGR00837381 araaP aromatic amino acid transport protein. aroma 99.86
PF03222394 Trp_Tyr_perm: Tryptophan/tyrosine permease family; 99.85
PRK15132403 tyrosine transporter TyrP; Provisional 99.81
TIGR00814397 stp serine transporter. The HAAAP family includes 99.71
PRK13629443 threonine/serine transporter TdcC; Provisional 99.69
TIGR00912359 2A0309 spore germination protein (amino acid perme 99.51
PRK10435 435 cadB lysine/cadaverine antiporter; Provisional 99.51
PRK10655 438 potE putrescine transporter; Provisional 99.51
TIGR00906 557 2A0303 cationic amino acid transport permease. 99.49
TIGR00909429 2A0306 amino acid transporter. 99.46
PRK11021410 putative transporter; Provisional 99.44
TIGR01773 452 GABAperm gamma-aminobutyrate permease. GabP is hig 99.44
PRK10249 458 phenylalanine transporter; Provisional 99.43
COG1113 462 AnsP Gamma-aminobutyrate permease and related perm 99.42
TIGR00905 473 2A0302 transporter, basic amino acid/polyamine ant 99.42
PRK11049 469 D-alanine/D-serine/glycine permease; Provisional 99.41
PRK10644 445 arginine:agmatin antiporter; Provisional 99.4
KOG1287 479 consensus Amino acid transporters [Amino acid tran 99.4
PF03845320 Spore_permease: Spore germination protein; InterPr 99.39
PRK11387 471 S-methylmethionine transporter; Provisional 99.37
TIGR00911 501 2A0308 L-type amino acid transporter. 99.36
TIGR00930 953 2a30 K-Cl cotransporter. 99.35
PRK11357 445 frlA putative fructoselysine transporter; Provisio 99.33
PRK10836 489 lysine transporter; Provisional 99.33
PRK15049 499 L-asparagine permease; Provisional 99.33
TIGR03810 468 arg_ornith_anti arginine/ornithine antiporter. Mem 99.32
PRK10746 461 putative transport protein YifK; Provisional 99.3
PRK10238 456 aromatic amino acid transporter; Provisional 99.3
PRK10580 457 proY putative proline-specific permease; Provision 99.29
TIGR00908 442 2A0305 ethanolamine permease. The three genes used 99.25
TIGR00913 478 2A0310 amino acid permease (yeast). 99.21
PF13520426 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G 99.15
PRK10197 446 gamma-aminobutyrate transporter; Provisional 99.13
COG0531 466 PotE Amino acid transporters [Amino acid transport 99.1
COG0833 541 LysP Amino acid transporters [Amino acid transport 99.06
KOG1286 554 consensus Amino acid transporters [Amino acid tran 98.99
KOG3832319 consensus Predicted amino acid transporter [Genera 98.97
TIGR03428 475 ureacarb_perm permease, urea carboxylase system. A 98.96
TIGR00907 482 2A0304 amino acid permease (GABA permease). 98.92
PRK15238 496 inner membrane transporter YjeM; Provisional 98.8
PF00324 478 AA_permease: Amino acid permease; InterPro: IPR004 98.79
TIGR00910 507 2A0307_GadC glutamate:gamma-aminobutyrate antiport 98.62
TIGR03813 474 put_Glu_GABA_T putative glutamate/gamma-aminobutyr 98.51
TIGR00800442 ncs1 NCS1 nucleoside transporter family. The NCS1 98.24
COG3949349 Uncharacterized membrane protein [Function unknown 98.11
KOG1289 550 consensus Amino acid transporters [Amino acid tran 98.03
PRK11375 484 allantoin permease; Provisional 97.82
COG0591 493 PutP Na+/proline symporter [Amino acid transport a 97.72
COG1457 442 CodB Purine-cytosine permease and related proteins 97.64
TIGR02119 471 panF sodium/pantothenate symporter. Pantothenate ( 97.61
PRK09442 483 panF sodium/panthothenate symporter; Provisional 97.53
TIGR00813407 sss transporter, SSS family. have different number 97.45
TIGR02358386 thia_cytX probable hydroxymethylpyrimidine transpo 97.28
PRK12488 549 acetate permease; Provisional 97.26
PRK09395 551 actP acetate permease; Provisional 97.01
PF02554376 CstA: Carbon starvation protein CstA; InterPro: IP 96.99
TIGR02711 549 symport_actP cation/acetate symporter ActP. Member 96.94
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 96.88
TIGR00835425 agcS amino acid carrier protein. Members of the AG 96.71
COG1953 497 FUI1 Cytosine/uracil/thiamine/allantoin permeases 96.64
TIGR02121 487 Na_Pro_sym sodium/proline symporter. This family c 96.59
PRK10484 523 putative transporter; Provisional 96.56
PF00474406 SSF: Sodium:solute symporter family; InterPro: IPR 96.48
PRK15419 502 proline:sodium symporter PutP; Provisional 96.47
TIGR03648 552 Na_symport_lg probable sodium:solute symporter, VC 96.35
PF02133 440 Transp_cyt_pur: Permease for cytosine/purines, ura 96.31
PRK11017404 codB cytosine permease; Provisional 96.22
KOG2083 643 consensus Na+/K+ symporter [Inorganic ion transpor 96.1
PRK15015 701 carbon starvation protein A; Provisional 95.52
COG1966 575 CstA Carbon starvation protein, predicted membrane 95.34
COG0733439 Na+-dependent transporters of the SNF family [Gene 94.99
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 94.35
KOG1288 945 consensus Amino acid transporters [Amino acid tran 94.3
KOG2466 572 consensus Uridine permease/thiamine transporter/al 93.76
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 93.08
PF01566358 Nramp: Natural resistance-associated macrophage pr 92.81
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 92.55
COG4147 529 DhlC Predicted symporter [General function predict 92.01
PF00209 523 SNF: Sodium:neurotransmitter symporter family; Int 90.96
COG1114431 BrnQ Branched-chain amino acid permeases [Amino ac 90.43
KOG2082 1075 consensus K+/Cl- cotransporter KCC1 and related tr 88.35
PF02028485 BCCT: BCCT family transporter; InterPro: IPR000060 86.46
PRK15433 439 branched-chain amino acid transport system 2 carri 84.04
PF01235416 Na_Ala_symp: Sodium:alanine symporter family; Inte 82.33
PRK15433439 branched-chain amino acid transport system 2 carri 80.52
KOG2349 585 consensus Na+:iodide/myo-inositol/multivitamin sym 80.08
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1.4e-46  Score=354.68  Aligned_cols=331  Identities=41%  Similarity=0.755  Sum_probs=286.1

Q ss_pred             CCCCCCCcccccCCchHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHhhccc---ccCCcc
Q 037598           16 KDLNDWLPITASRKAKWWYSAFHNVTAMVGAGVLGLPFAFSQLGWGAGFAAIFGSWAITFYSLWQLVELHE---VVPGKR   92 (360)
Q Consensus        16 ~~~~~~~~~~~~~~~s~~~~~~~l~~~~vG~GiL~lP~~f~~~G~~~g~i~ll~~~~~~~~t~~~l~~~~~---~~~~~~   92 (360)
                      .+.+++++..++|+.|++++.++.++.++|.|+|++||++++.||..|+++++..++++.||+.+|.+|.+   ..+++|
T Consensus        24 ~~~~~~~~~~~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r  103 (437)
T KOG1303|consen   24 SDVDDWDPITPSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKR  103 (437)
T ss_pred             cccccCCccccCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcc
Confidence            45556677777899999999999999999999999999999999999999999999999999999999844   345666


Q ss_pred             cCChHHHHHHhcCCccceeehhHHHHHHHhhhhheeeeecccchHHHHHHhccCCcccchhHHHHHHHHHHHHhhcCCCC
Q 037598           93 FDRYPELGEHCFGPRFGYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHNVENVRLTYFILIFACLHLVLSQTPNF  172 (360)
Q Consensus        93 ~~sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~lpl~~~~~l  172 (360)
                      ..+|.|+++++||++. ++++..++.+.++++++.|++..+|.+..+.+..+.++...+.+.++++++++++|++++||+
T Consensus       104 ~~~Y~dl~~~afG~~~-~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~~l~~~~f~iif~~i~~~~s~lp~~  182 (437)
T KOG1303|consen  104 RYRYPDLGQAAFGPKG-RLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDNSLDKQYFIIIFGLIVLPLSQLPNF  182 (437)
T ss_pred             CCChHHHHHHHhCCCc-eEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccceehhhhHHHHHHHHHHCCCc
Confidence            7889999999999865 889999999999999999999999999999999886542345789999999999999999999


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHhHhhhcCCCCCCccccccCCccchhHhhHHHHHHHHHHHhcCCceehhhhccCCCCCC
Q 037598          173 NSLKGVSLLAAVMSICYSMVALITSIKKGIHHRPESYGVRSHTEVGKAFDFLNGLGTVAFAFAGHSVVLEIQATIPSTPE  252 (360)
Q Consensus       173 ~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~  252 (360)
                      +.+++.|..+.+.++.+..+.+..+...+......+.+.... .+...  .++++|++.|+|.||.++|++|++|    |
T Consensus       183 ~~l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~-~~~~~--~f~a~g~iaFaf~gH~v~peIq~tM----k  255 (437)
T KOG1303|consen  183 HSLSYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDL-GTIPT--VFTALGIIAFAYGGHAVLPEIQHTM----K  255 (437)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCcccC-CCCcc--hhhhhhheeeeecCCeeeeehHhhc----C
Confidence            999999999999998888888777777664321111111111 11111  1899999999999999999999999    8


Q ss_pred             CCCCCCcchhhhHHHHHHHHHHHHHHhhhhhccCCCchhhHhhcccCchHHHHHHHHHHHHHHHhhhhcccccHHHHHHH
Q 037598          253 VPSKKPMWKGVVVAYVIVAFCYLSVGISGYWAFGQYVEDDVLISLRKPAWLIAIANFMVFFHVVGSYQVFAMPVFDMIES  332 (360)
Q Consensus       253 ~p~~~~~~~~~~~~~~i~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~  332 (360)
                      +|.+  |+|++.+++.+++.+|+..++.||++|||+++++++.|+.++.|....+++++.+|++.++.+...|+.+.+|+
T Consensus       256 ~p~~--f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~~p~~~~~~ani~i~~h~i~s~~i~a~pl~~~~E~  333 (437)
T KOG1303|consen  256 SPPK--FKKALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQPPTWLIALANILIVLHLIGSYQIYAQPLFDVVEK  333 (437)
T ss_pred             Cchh--hhhHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhcccCchhHHHHHHHHHHHHHhhhhhhhhcchHHHHHH
Confidence            8877  66999999999999999999999999999999999999976789999999999999999999999999999999


Q ss_pred             HHhhccC-C-CCcchhheeeeEeEEE
Q 037598          333 YLVQHMR-F-TPGLLLRLVARSSYVG  356 (360)
Q Consensus       333 ~~~~~~~-~-~~~~~~~~~~r~~~~~  356 (360)
                      ....+++ . ++..++|.+.|+.+++
T Consensus       334 ~~~~~~~~~~~~~~~~R~~~Rt~~v~  359 (437)
T KOG1303|consen  334 LIGVKHPDFKKRSLVLRLLVRTFFVA  359 (437)
T ss_pred             HhccCCccccccccceeeehhhHHHH
Confidence            9987765 2 2456799999998764

>PTZ00206 amino acid transporter; Provisional Back     alignment and domain information
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR) Back     alignment and domain information
>PLN03074 auxin influx permease; Provisional Back     alignment and domain information
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism] Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>PRK09664 tryptophan permease TnaB; Provisional Back     alignment and domain information
>PRK10483 tryptophan permease; Provisional Back     alignment and domain information
>TIGR00837 araaP aromatic amino acid transport protein Back     alignment and domain information
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PRK15132 tyrosine transporter TyrP; Provisional Back     alignment and domain information
>TIGR00814 stp serine transporter Back     alignment and domain information
>PRK13629 threonine/serine transporter TdcC; Provisional Back     alignment and domain information
>TIGR00912 2A0309 spore germination protein (amino acid permease) Back     alignment and domain information
>PRK10435 cadB lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>PRK10655 potE putrescine transporter; Provisional Back     alignment and domain information
>TIGR00906 2A0303 cationic amino acid transport permease Back     alignment and domain information
>TIGR00909 2A0306 amino acid transporter Back     alignment and domain information
>PRK11021 putative transporter; Provisional Back     alignment and domain information
>TIGR01773 GABAperm gamma-aminobutyrate permease Back     alignment and domain information
>PRK10249 phenylalanine transporter; Provisional Back     alignment and domain information
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>PRK11049 D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>PRK10644 arginine:agmatin antiporter; Provisional Back     alignment and domain information
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PRK11387 S-methylmethionine transporter; Provisional Back     alignment and domain information
>TIGR00911 2A0308 L-type amino acid transporter Back     alignment and domain information
>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>PRK11357 frlA putative fructoselysine transporter; Provisional Back     alignment and domain information
>PRK10836 lysine transporter; Provisional Back     alignment and domain information
>PRK15049 L-asparagine permease; Provisional Back     alignment and domain information
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter Back     alignment and domain information
>PRK10746 putative transport protein YifK; Provisional Back     alignment and domain information
>PRK10238 aromatic amino acid transporter; Provisional Back     alignment and domain information
>PRK10580 proY putative proline-specific permease; Provisional Back     alignment and domain information
>TIGR00908 2A0305 ethanolamine permease Back     alignment and domain information
>TIGR00913 2A0310 amino acid permease (yeast) Back     alignment and domain information
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A Back     alignment and domain information
>PRK10197 gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>KOG3832 consensus Predicted amino acid transporter [General function prediction only] Back     alignment and domain information
>TIGR03428 ureacarb_perm permease, urea carboxylase system Back     alignment and domain information
>TIGR00907 2A0304 amino acid permease (GABA permease) Back     alignment and domain information
>PRK15238 inner membrane transporter YjeM; Provisional Back     alignment and domain information
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>TIGR00800 ncs1 NCS1 nucleoside transporter family Back     alignment and domain information
>COG3949 Uncharacterized membrane protein [Function unknown] Back     alignment and domain information
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK11375 allantoin permease; Provisional Back     alignment and domain information
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] Back     alignment and domain information
>TIGR02119 panF sodium/pantothenate symporter Back     alignment and domain information
>PRK09442 panF sodium/panthothenate symporter; Provisional Back     alignment and domain information
>TIGR00813 sss transporter, SSS family Back     alignment and domain information
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX Back     alignment and domain information
>PRK12488 acetate permease; Provisional Back     alignment and domain information
>PRK09395 actP acetate permease; Provisional Back     alignment and domain information
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex Back     alignment and domain information
>TIGR02711 symport_actP cation/acetate symporter ActP Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>TIGR00835 agcS amino acid carrier protein Back     alignment and domain information
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>TIGR02121 Na_Pro_sym sodium/proline symporter Back     alignment and domain information
>PRK10484 putative transporter; Provisional Back     alignment and domain information
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells Back     alignment and domain information
>PRK15419 proline:sodium symporter PutP; Provisional Back     alignment and domain information
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily Back     alignment and domain information
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines Back     alignment and domain information
>PRK11017 codB cytosine permease; Provisional Back     alignment and domain information
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK15015 carbon starvation protein A; Provisional Back     alignment and domain information
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms] Back     alignment and domain information
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only] Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism] Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2 Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>COG4147 DhlC Predicted symporter [General function prediction only] Back     alignment and domain information
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses Back     alignment and domain information
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query360
3l1l_A 445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 99.57
3gia_A 444 Uncharacterized protein MJ0609; membrane protein, 99.44
4djk_A 511 Probable glutamate/gamma-aminobutyrate antiporter; 99.18
2jln_A 501 MHP1; hydantoin, transporter, membrane protein, nu 98.27
3dh4_A 530 Sodium/glucose cotransporter; membrane protein, sy 96.07
2xq2_A 593 Sodium/glucose cotransporter; transport protein, i 95.87
2a65_A 519 Leutaa, Na(+):neurotransmitter symporter (SNF fami 95.04
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Back     alignment and structure
Probab=99.57  E-value=2e-14  Score=137.98  Aligned_cols=291  Identities=15%  Similarity=0.096  Sum_probs=173.6

Q ss_pred             ccCCchHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHhhcccccCCcccCChHHHHHHhcC
Q 037598           26 ASRKAKWWYSAFHNVTAMVGAGVLGLPFAFSQLGWGAGFAAIFGSWAITFYSLWQLVELHEVVPGKRFDRYPELGEHCFG  105 (360)
Q Consensus        26 ~~~~~s~~~~~~~l~~~~vG~GiL~lP~~f~~~G~~~g~i~ll~~~~~~~~t~~~l~~~~~~~~~~~~~sy~~l~~~~~G  105 (360)
                      ++|+.+.++..+..+++++|+|++.+|....+.|. .+++..++.+++....+..+.|.....|...  +..+..++.+|
T Consensus         6 ~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~-~~~~~~li~~~~~~~~a~~~~el~~~~p~~G--g~y~~~~~~~G   82 (445)
T 3l1l_A            6 DAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGG-IAIYGWLVTIIGALGLSMVYAKMSFLDPSPG--GSYAYARRCFG   82 (445)
T ss_dssp             -CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCTT--THHHHHHHHSC
T ss_pred             CCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHccCCCCC--CchhhHHhHcC
Confidence            46789999999999999999999999999888997 4788888899999999999999866566543  67788999999


Q ss_pred             CccceeehhHHHHHHHhhhhheeeeecccchHHHHHHhccCCcccchhHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHH
Q 037598          106 PRFGYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVELLDHNVENVRLTYFILIFACLHLVLSQTPNFNSLKGVSLLAAVM  185 (360)
Q Consensus       106 ~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~lpl~~~~~l~~l~~~s~~~~~~  185 (360)
                      |++|.. ......+........+....++.+..+++...   .++....+. +..++.+-....+..+...+++.+....
T Consensus        83 ~~~g~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~in~~g~~~~~~~~~~~~~~  157 (445)
T 3l1l_A           83 PFLGYQ-TNVLYWLACWIGNIAMVVIGVGYLSYFFPILK---DPWVLTITC-VVVLWIFVLLNIVGPKMITRVQAVATVL  157 (445)
T ss_dssp             HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGG---SHHHHHHHH-HHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             ChHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCcccc---ccHHHHHHH-HHHHHHHHHHHHhchHHHHHHHHHHHHH
Confidence            888764 44444444444444444444444443322210   011111111 1111222222234556666665555444


Q ss_pred             HHHHHHHHHhHhhhcCCCCCCccccccCCccchhHhhHHHHHHHHHHHhcCCceehhhhccCCCCCCCCCCCCcchhhhH
Q 037598          186 SICYSMVALITSIKKGIHHRPESYGVRSHTEVGKAFDFLNGLGTVAFAFAGHSVVLEIQATIPSTPEVPSKKPMWKGVVV  265 (360)
Q Consensus       186 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~  265 (360)
                      .+..++++++.......++ .....+. .....++.++..++....|+|.|.+......+|+    |||+| +.+|++..
T Consensus       158 ~i~~~~~~~i~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~----k~p~r-~ip~a~~~  230 (445)
T 3l1l_A          158 ALIPIVGIAVFGWFWFRGE-TYMAAWN-VSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVV----KNPKR-NVPIATIG  230 (445)
T ss_dssp             HHHHHHHHHHTTSTTCCCC-CCCCC------------HHHHHHHHHHTTTTTTHHHHGGGGB----SSHHH-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhChh-hcccccC-ccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHh----cCccc-cccHHHHH
Confidence            3333322222222211111 1111111 1112236678899999999999999999999999    99975 68899999


Q ss_pred             HHHHHHHHHHHHHhhhhhccCCCch----hh---HhhcccCchHHHHHHHHHHHHHHHhhhhcccccHHHHHHH
Q 037598          266 AYVIVAFCYLSVGISGYWAFGQYVE----DD---VLISLRKPAWLIAIANFMVFFHVVGSYQVFAMPVFDMIES  332 (360)
Q Consensus       266 ~~~i~~~~Y~~~g~~gy~~fG~~~~----~~---il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~  332 (360)
                      +..++.++|++.........+.+..    .+   +..... .++...+..+...+..+.+.--..+...+.+..
T Consensus       231 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~  303 (445)
T 3l1l_A          231 GVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMAL-GDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKA  303 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHH-CTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999988776666553221    11   111211 234444555555555555554444444444433
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Back     alignment and structure
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A Back     alignment and structure
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Back     alignment and structure
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Back     alignment and structure
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query360
d2a65a1 509 Na(+):neurotransmitter symporter homologue LeuT {A 90.73
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

Probab=90.73  E-value=5.5  Score=35.75  Aligned_cols=111  Identities=14%  Similarity=0.075  Sum_probs=56.5

Q ss_pred             chHHHHHHHHHhhhhhhhhc-hHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHhhccccc-CCcccCChHHHHHHhcCCc
Q 037598           30 AKWWYSAFHNVTAMVGAGVL-GLPFAFSQLGWGAGFAAIFGSWAITFYSLWQLVELHEVV-PGKRFDRYPELGEHCFGPR  107 (360)
Q Consensus        30 ~s~~~~~~~l~~~~vG~GiL-~lP~~f~~~G~~~g~i~ll~~~~~~~~t~~~l~~~~~~~-~~~~~~sy~~l~~~~~G~~  107 (360)
                      .|..+.++..++..+|.|=+ -.||...+-|-..-++..+++.++...-...+=-+.-+. .......+..+.....+.+
T Consensus         5 ~s~~~fila~~g~avGlGNiWrFPyl~~~nGGgaFlipY~~~l~l~gvPll~lE~~lGq~~~~g~i~~~~~i~~~~~~~~   84 (509)
T d2a65a1           5 ATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWRNR   84 (509)
T ss_dssp             SCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTTCCSHHHHHHHHSCSH
T ss_pred             CChHHHHHHHHHHHhcccHHHhhhHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHhccCc
Confidence            35578888999999999764 589998766632223333332222222222221111001 1112346777777665543


Q ss_pred             cceeehhHHHHHHHhhhhheeeeecccchHHHHH
Q 037598          108 FGYWFVMPQQMLVQIATDIVYMVTGGKSLMKFVE  141 (360)
Q Consensus       108 ~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~  141 (360)
                      ..+.+.. ...+.++..++-|.+..+-.+.....
T Consensus        85 ~~~giG~-~~~~~~~~i~~yy~vi~~w~l~Y~~~  117 (509)
T d2a65a1          85 FAKILGV-FGLWIPLVVAIYYVYIESWTLGFAIK  117 (509)
T ss_dssp             HHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3343333 33444455555566666655544443