Citrus Sinensis ID: 037610

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-----
MASCPKGTPSTLLHLDAQVMGGQRVTTVVTKDELTEFMQSTILKRQEFDEVPFYLMDLGVVVSLYNHMISNLPMIHPHYAVKCNPEPALLEALAALGSNFDCGSRSEIEAVLLLDVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLKAAEASGLSVVGVSFHVGSEATNFAAFRGAIAAAKAVFDTAARTSNNKMRKLFKLIFRELLPGSSLKVISEPGRFFAASAFTLYAQIIGKRVRGELREYWINDGKFGSLAWVTCDEAIAKCTPLPFASSFTTSKGLTRTYNSTVFGPTCDAFDEVFTGHKLPELEVNDWLVFSEMGAYTTACGTNFNGYSTVAIPTYVVRSNQTLLAI
cccccccccccHHHHccccccccEEEEcccHHHHHHHHHHHHHHHcccccccEEEEEHHHHHHHHHHHHHHccccccEEEccccccHHHHHHHHHccccEEEccHHHHHHHHHcccccccEEEccccccHHHHHHHHHccccEEEcccHHHHHHHHHHccccEEEEEEEcccccccccccccccccccccccHHHHHHHHHHccccEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccEEEEccccHHccccEEEEEEEEEEEEcccccEEEEEEcccccccHHHcccccccEEEcccccccccccccccEEEEEEEccccccccEEEccccccccccccEEEEcccccccccccccccccccccEEEEEEccccccccc
cccccccccccccccccHHcccccEEcHHHHHHHHHHHHHHHHHHcccccccEEEEcHHHHHHHHHHHHHHcccccEEEEEEccccHHHHHHHHHcccccccccHHHHHHHHHccccHcHEEEEcccccHHHHHHHHHccccEEEEccHHHHHHHHHHcccccEEEEEEccccccccccccccccccccHHHHHHHHHHHHHccccEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccEEEEcccHHHHHHHHHHHHHHHEEccccccEEEEEEcccccccccccHcccccccEEEEcccHcccccccccccEEEEEccccccccHHcccccccccccccEEEEcccccEEEEEcccccccccccEEEEEEccHHHHHcc
mascpkgtpstllhldaqvmggqrvTTVVTKDELTEFMQSTILkrqefdevpfYLMDLGVVVSLYNHmisnlpmihphyavkcnpePALLEALAALgsnfdcgsrsEIEAVLLldvspdriiyanpckpvshiKYAASVGvnlttvdsveeldkirnwhpksdllirikspddsgakypldskygaghhpqeIMPLLKAAEASGLSVVGVSFHvgseatnfAAFRGAIAAAKAVFDTAARTSNNKMRKLFKLIFRellpgsslkvisepgrffAASAFTLYAQIIGKRVRGELREYWindgkfgslaWVTCDeaiakctplpfassfttskgltrtynstvfgptcdafdevftghklpelevndwLVFSEMGAyttacgtnfngystvaiptyvvrsnqtllai
mascpkgtpstllhldaqvmggQRVTTVVTKDELTEFMQstilkrqefdeVPFYLMDLGVVVSLYNHMISNLPMIHPHYAVKCNPEPALLEALAALGSNFDCGSRSEIEAVLLLDVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELdkirnwhpksdllirikspddsgAKYPLDSKYGAGHHPQEIMPLLKAAEASGLSVVGVSFHVGSEATNFAAFRGAIAAAKAVFDtaartsnnKMRKLFKLIFRELLPGSSLKVISEPGRFFAASAFTLYAQIIGKRVRGELREYWINDGKFGSLAWVTCDEAIAKCTplpfassfttskgltrtYNSTVFGPTCDAFDEVFTGHKLPELEVNDWLVFSEMGAYTTACGTNFNGYSTVAIPTYVVRsnqtllai
MASCPKGTPSTLLHLDAQVMGGQRVTTVVTKDELTEFMQSTILKRQEFDEVPFYLMDLGVVVSLYNHMISNLPMIHPHYAVKCNpepallealaalGSNFDCGSRSEIEAVLLLDVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLKAAEASGLSVVGVSFHVGSEatnfaafrgaiaaakavfDTAARTSNNKMRKLFKLIFRELLPGSSLKVISEPGRFFAASAFTLYAQIIGKRVRGELREYWINDGKFGSLAWVTCDEAIAKCTPLPFASSFTTSKGLTRTYNSTVFGPTCDAFDEVFTGHKLPELEVNDWLVFSEMGAYTTACGTNFNGYSTVAIPTYVVRSNQTLLAI
***********LLHLDAQVMGGQRVTTVVTKDELTEFMQSTILKRQEFDEVPFYLMDLGVVVSLYNHMISNLPMIHPHYAVKCNPEPALLEALAALGSNFDCGSRSEIEAVLLLDVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRI************************IMPLLKAAEASGLSVVGVSFHVGSEATNFAAFRGAIAAAKAVFDTAARTSNNKMRKLFKLIFRELLPGSSLKVISEPGRFFAASAFTLYAQIIGKRVRGELREYWINDGKFGSLAWVTCDEAIAKCTPLPFASSFTTSKGLTRTYNSTVFGPTCDAFDEVFTGHKLPELEVNDWLVFSEMGAYTTACGTNFNGYSTVAIPTYVVRSN******
***************************VVTKDELTEFMQSTILKRQEFDEVPFYLMDLGVVVSLYNHMISNLPMIHPHYAVKCNPEPALLEALAALGSNFDCGSRSEIEAVLLLDVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLKAAEASGLSVVGVSFHVGSEATNFAAFRGAIAAAKAVFDTAARTSNNKMRKLFKLIFRELLPGSSLKVISEPGRFFAASAFTLYAQIIGKRVRGELREYWINDGKFGSLAWVTCDEAIAKCTPLPFA**********RTYNSTVFGPTCDAFDEVFTGHKLPELEVNDWLVFSEMGAYTTACGTNFNGYSTVAIPTYVVRSNQTLLAI
********PSTLLHLDAQVMGGQRVTTVVTKDELTEFMQSTILKRQEFDEVPFYLMDLGVVVSLYNHMISNLPMIHPHYAVKCNPEPALLEALAALGSNFDCGSRSEIEAVLLLDVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLKAAEASGLSVVGVSFHVGSEATNFAAFRGAIAAAKAVFDTAARTSNNKMRKLFKLIFRELLPGSSLKVISEPGRFFAASAFTLYAQIIGKRVRGELREYWINDGKFGSLAWVTCDEAIAKCTPLPFASSFTTSKGLTRTYNSTVFGPTCDAFDEVFTGHKLPELEVNDWLVFSEMGAYTTACGTNFNGYSTVAIPTYVVRSNQTLLAI
************LHLDAQVMGGQRVTTVVTKDELTEFMQSTILKRQEFDEVPFYLMDLGVVVSLYNHMISNLPMIHPHYAVKCNPEPALLEALAALGSNFDCGSRSEIEAVLLLDVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLKAAEASGLSVVGVSFHVGSEATNFAAFRGAIAAAKAVFDTAARTSNNKMRKLFKLIFRELLPGSSLKVISEPGRFFAASAFTLYAQIIGKRVRGELREYWINDGKFGSLAWVTCDEAIAKCTPLPFASSFTTSKGLTRTYNSTVFGPTCDAFDEVFTGHKLPELEVNDWLVFSEMGAYTTACGTNFNGYSTVAIPTYVVRSNQTL*AI
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MASCPKGTPSTLLHLDAQVMGGQRVTTVVTKDELTEFMQSTILKRQEFDEVPFYLMDLGVVVSLYNHMISNLPMIHPHYAVKCNPEPALLEALAALGSNFDCGSRSEIEAVLLLDVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLKAAEASGLSVVGVSFHVGSEATNFAAFRGAIAAAKAVFDTAARTSNNKMRKLFKLIFRELLPGSSLKVISEPGRFFAASAFTLYAQIIGKRVRGELREYWINDGKFGSLAWVTCDEAIAKCTPLPFASSFTTSKGLTRTYNSTVFGPTCDAFDEVFTGHKLPELEVNDWLVFSEMGAYTTACGTNFNGYSTVAIPTYVVRSNQTLLAI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query405 2.2.26 [Sep-21-2011]
P50134431 Ornithine decarboxylase O N/A no 0.913 0.858 0.517 1e-108
O22616431 Ornithine decarboxylase O N/A no 0.913 0.858 0.510 1e-105
Q8S3N2435 Ornithine decarboxylase O N/A no 0.913 0.850 0.497 1e-101
P08432466 Ornithine decarboxylase O yes no 0.832 0.723 0.385 1e-66
Q54UF3461 Probable ornithine decarb yes no 0.807 0.709 0.382 1e-64
P07805423 Ornithine decarboxylase O N/A no 0.832 0.796 0.367 2e-63
Q9UQW9432 Ornithine decarboxylase O yes no 0.871 0.817 0.386 6e-63
P27117461 Ornithine decarboxylase O yes no 0.839 0.737 0.386 2e-62
P11926461 Ornithine decarboxylase O yes no 0.824 0.724 0.390 3e-62
P09057461 Ornithine decarboxylase O yes no 0.849 0.746 0.379 5e-62
>sp|P50134|DCOR_DATST Ornithine decarboxylase OS=Datura stramonium PE=2 SV=1 Back     alignment and function desciption
 Score =  391 bits (1005), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 203/392 (51%), Positives = 263/392 (67%), Gaps = 22/392 (5%)

Query: 24  RVTTVVTKDELTEFMQSTILKRQEFDEVPFYLMDLGVVVSLYNHMISNLPMIHPHYAVKC 83
           R    +++D L +FM S I ++ + ++ PFY++DLG VVSL +   + LP I P YAVKC
Sbjct: 36  RKVVPLSRDALQDFMVSIITQKLQDEKQPFYVLDLGEVVSLMDQWNAGLPNIRPFYAVKC 95

Query: 84  NPEPALLEALAALGSNFDCGSRSEIEAVLLLDVSPDRIIYANPCKPVSHIKYAASVGVNL 143
           NPEP+ L  L+A+GSNFDC SR+EIE VL L +SPDRI++ANPCKP S I +AA VGVNL
Sbjct: 96  NPEPSFLSMLSAMGSNFDCASRAEIEYVLSLGISPDRIVFANPCKPESDIIFAAKVGVNL 155

Query: 144 TTVDSVEELDKIRNWHPKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLKAAEAS 203
           TT DS +E+ KIR  HPK +LL+RIK  DD  A+ P+  KYGA   P+E+ PLL+ A+A+
Sbjct: 156 TTFDSEDEVYKIRKHHPKCELLLRIKPMDDGNARCPMGPKYGA--LPEEVEPLLRTAQAA 213

Query: 204 GLSVVGVSFHVGSEATNFAAFRGAIAAAKAVFDTAARTSNNKMRKL-------------- 249
            L+V GVSFH+GS   +  A+ GAIAAAK VF+TAAR   +KM  L              
Sbjct: 214 RLTVSGVSFHIGSGDADSKAYLGAIAAAKGVFETAARFGMSKMTVLDIGGGFTSGHQFTT 273

Query: 250 -----FKLIFRELLPGSSLKVISEPGRFFAASAFTLYAQIIGKRVRGELREYWINDGKFG 304
                   + +       L +I+EPGRFFA +AFTL   IIGKRVRGELREYWINDG +G
Sbjct: 274 ASAAVRSALEQHFHDEQELTIIAEPGRFFAETAFTLATTIIGKRVRGELREYWINDGLYG 333

Query: 305 SLAWVTCDEAIAKCTPLPFASSFTT-SKGLTRTYNSTVFGPTCDAFDEVFTGHKLPELEV 363
           S+  V  D A    TPL   S+ +  + G ++T+ STVFGPTCDA D V   ++LPEL+V
Sbjct: 334 SMNCVLYDHATVNATPLACMSNRSNLNCGGSKTFPSTVFGPTCDALDTVLRDYQLPELQV 393

Query: 364 NDWLVFSEMGAYTTACGTNFNGYSTVAIPTYV 395
           NDWL+F  MGAYT A G+NFNG++T AI T++
Sbjct: 394 NDWLIFPNMGAYTKAAGSNFNGFNTSAIVTHL 425

Datura stramonium (taxid: 4076)
EC: 4EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 7
>sp|O22616|DCOR_SOLLC Ornithine decarboxylase OS=Solanum lycopersicum GN=ODC PE=2 SV=2 Back     alignment and function description
>sp|Q8S3N2|DCOR_CAPAN Ornithine decarboxylase OS=Capsicum annuum GN=ODC PE=2 SV=1 Back     alignment and function description
>sp|P08432|DCOR_YEAST Ornithine decarboxylase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SPE1 PE=1 SV=1 Back     alignment and function description
>sp|Q54UF3|DCOR_DICDI Probable ornithine decarboxylase OS=Dictyostelium discoideum GN=odc PE=3 SV=1 Back     alignment and function description
>sp|P07805|DCOR_TRYBB Ornithine decarboxylase OS=Trypanosoma brucei brucei PE=1 SV=2 Back     alignment and function description
>sp|Q9UQW9|DCOR_SCHPO Ornithine decarboxylase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=spe1 PE=2 SV=1 Back     alignment and function description
>sp|P27117|DCOR_BOVIN Ornithine decarboxylase OS=Bos taurus GN=ODC1 PE=2 SV=1 Back     alignment and function description
>sp|P11926|DCOR_HUMAN Ornithine decarboxylase OS=Homo sapiens GN=ODC1 PE=1 SV=2 Back     alignment and function description
>sp|P09057|DCOR_RAT Ornithine decarboxylase OS=Rattus norvegicus GN=Odc1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query405
224085964416 predicted protein [Populus trichocarpa] 0.970 0.944 0.583 1e-126
349617697413 ornithine decarboxylase [Erythroxylum co 0.938 0.920 0.571 1e-123
124298701411 putative ornithine decarboxylase [Theobr 0.953 0.939 0.570 1e-121
334351366455 lysine/ornithine decarboxylase [Echinoso 0.943 0.839 0.544 1e-114
334351364457 lysine/ornithine decarboxylase [Sophora 0.925 0.820 0.548 1e-114
359491943411 PREDICTED: LOW QUALITY PROTEIN: ornithin 0.938 0.924 0.557 1e-114
224061945381 predicted protein [Populus trichocarpa] 0.883 0.939 0.569 1e-109
255539090416 ornithine decarboxylase, putative [Ricin 0.896 0.872 0.544 1e-107
5738966432 ornithine decarboxylase [Nicotiana tabac 0.923 0.865 0.519 1e-107
306920205433 ornithine decarboxylase [Nicotiana glauc 0.918 0.859 0.525 1e-106
>gi|224085964|ref|XP_002307756.1| predicted protein [Populus trichocarpa] gi|222857205|gb|EEE94752.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 245/420 (58%), Positives = 293/420 (69%), Gaps = 27/420 (6%)

Query: 1   MASCPKGTPSTLLHLDAQVMGGQRVTTVVTKDELTEFMQSTILKRQEFDEVPFYLMDLGV 60
           M S PK  P   + L A  + G+RVTT+ +K+ LTEFM S I K+QE  E PFY++DLG 
Sbjct: 1   MGSIPK-NPHAGVLLGAPGVKGKRVTTI-SKNGLTEFMLSIISKKQETKE-PFYVLDLGE 57

Query: 61  VVSLYNHMISNLPMIHPHYAVKCNPEPALLEALAALGSNFDCGSRSEIEAVLLLDVSPDR 120
           V +L +  +  LPM+HP YAVKCNP+PALL +LAALGSNFDC SR+EIE+VL L VSP+R
Sbjct: 58  VTALMDKWLMTLPMVHPFYAVKCNPDPALLGSLAALGSNFDCASRAEIESVLSLGVSPNR 117

Query: 121 IIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKSPDDSGAKYPL 180
           I+YANPCK  SHIKYAASVGVNLTT DS EELDKIR WH K  LLIRIK+PDDSGA+ PL
Sbjct: 118 IVYANPCKQESHIKYAASVGVNLTTFDSKEELDKIRKWHSKCALLIRIKAPDDSGARCPL 177

Query: 181 DSKYGAGHHPQEIMPLLKAAEASGLSVVGVSFHVGSEATNFAAFRGAIAAAKAVFDTAAR 240
             KYGA   P E+ PLL+AA+ + L+VVGVSFH+GS AT   A+ GAIA+AK+VF+ A R
Sbjct: 178 GPKYGA--LPDEVTPLLQAAQTAQLNVVGVSFHIGSGATRSRAYEGAIASAKSVFEAAVR 235

Query: 241 TSNNKMRKL------------------FKLIFRELLPGS-SLKVISEPGRFFAASAFTLY 281
                M+ L                   K   +   P    L VISEPGRFFA SAFTL 
Sbjct: 236 LGMPGMKILNIGGGFTAGSQFDEAATTIKSALQAYFPNEPGLTVISEPGRFFAESAFTLA 295

Query: 282 AQIIGKRVRGELREYWINDGKFGSLAWVTCDEAIAKCTPLPFASSFT--TSKGLTRTYNS 339
             IIGKRVRG+LREYWINDG +GS+  +  D A   CTPL   S+    T KGL R Y+S
Sbjct: 296 TNIIGKRVRGDLREYWINDGIYGSMNCILYDHATITCTPLACNSNHANLTCKGL-RAYSS 354

Query: 340 TVFGPTCDAFDEVFTGHKLPELEVNDWLVFSEMGAYTTACGTNFNGYSTVAIPTYVVRSN 399
           TVFGPTCDA D V TGH+LPEL++NDWLVF  MGAYT A G++FNG++T AI T++  SN
Sbjct: 355 TVFGPTCDALDTVLTGHQLPELQINDWLVFPNMGAYTAAAGSSFNGFNTAAILTHLASSN 414

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|349617697|gb|AEQ02350.1| ornithine decarboxylase [Erythroxylum coca] Back     alignment and taxonomy information
>gi|124298701|gb|ABN04356.1| putative ornithine decarboxylase [Theobroma cacao] Back     alignment and taxonomy information
>gi|334351366|dbj|BAK32801.1| lysine/ornithine decarboxylase [Echinosophora koreensis] Back     alignment and taxonomy information
>gi|334351364|dbj|BAK32800.1| lysine/ornithine decarboxylase [Sophora flavescens] Back     alignment and taxonomy information
>gi|359491943|ref|XP_003634343.1| PREDICTED: LOW QUALITY PROTEIN: ornithine decarboxylase [Vitis vinifera] Back     alignment and taxonomy information
>gi|224061945|ref|XP_002300677.1| predicted protein [Populus trichocarpa] gi|222842403|gb|EEE79950.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255539090|ref|XP_002510610.1| ornithine decarboxylase, putative [Ricinus communis] gi|223551311|gb|EEF52797.1| ornithine decarboxylase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|5738966|dbj|BAA83427.1| ornithine decarboxylase [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|306920205|emb|CBX19979.1| ornithine decarboxylase [Nicotiana glauca] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query405
SGD|S000001667466 SPE1 "Ornithine decarboxylase" 0.595 0.517 0.403 2.9e-60
UNIPROTKB|I3LTY3449 ODC1 "Uncharacterized protein" 0.407 0.367 0.452 2.6e-55
UNIPROTKB|P11926461 ODC1 "Ornithine decarboxylase" 0.407 0.357 0.458 8.8e-55
UNIPROTKB|P27117461 ODC1 "Ornithine decarboxylase" 0.407 0.357 0.452 1.8e-54
RGD|3227461 Odc1 "ornithine decarboxylase 0.407 0.357 0.464 3.7e-54
UNIPROTKB|E2R8D9461 ODC1 "Uncharacterized protein" 0.407 0.357 0.446 4.8e-54
MGI|MGI:97402461 Odc1 "ornithine decarboxylase, 0.407 0.357 0.446 5.4e-53
CGD|CAL0005099473 SPE1 [Candida albicans (taxid: 0.496 0.424 0.403 9.7e-53
UNIPROTKB|P78599473 SPE1 "Ornithine decarboxylase" 0.496 0.424 0.403 9.7e-53
UNIPROTKB|P27118450 ODC1 "Ornithine decarboxylase" 0.407 0.366 0.458 1.4e-52
SGD|S000001667 SPE1 "Ornithine decarboxylase" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
 Score = 450 (163.5 bits), Expect = 2.9e-60, Sum P(2) = 2.9e-60
 Identities = 106/263 (40%), Positives = 143/263 (54%)

Query:    49 DEVPFYLMDLGVVVSLYNHMISNLPMIHPHYAVKCNXXXXXXXXXXXXGSNFDCGSRSEI 108
             +E  F++ DLG V  L+N+ +  LP I P YAVKCN            G NFDC S+ EI
Sbjct:    83 EENSFFICDLGEVKRLFNNWVKELPRIKPFYAVKCNPDTKVLSLLAELGVNFDCASKVEI 142

Query:   109 EAVLLLDVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRI 168
             + VL +++SPDRI+YANPCK  S I+YAAS  V  +T D+VEEL KI+ +HP+S LL+RI
Sbjct:   143 DRVLSMNISPDRIVYANPCKVASFIRYAASKNVMKSTFDNVEELHKIKKFHPESQLLLRI 202

Query:   169 KSPDDSGAKYPLDSKYGAGHHPQEIMPLLKAAEASGLSVVGVSFHVGSEXXXXXXXXXXX 228
              + DDS A+  L +KYG     + +  LLKA +  GL++ GVSFHVGS            
Sbjct:   203 AT-DDSTAQCRLSTKYGC--EMENVDVLLKAIKELGLNLAGVSFHVGSGASDFTSLYKAV 259

Query:   229 XXXXXXXDTAART------------------SNNKMRKLFKLIFRELLP-GSSLKVISEP 269
                    D AA                    S  +   + +L   E  P G  + +I+EP
Sbjct:   260 RDARTVFDKAANEYGLPPLKILDVGGGFQFESFKESTAVLRLALEEFFPVGCGVDIIAEP 319

Query:   270 GRFFAASAFTLYAQIIGKRVRGE 292
             GR+F A+AFTL + +I KR   E
Sbjct:   320 GRYFVATAFTLASHVIAKRKLSE 342
GO:0004586 "ornithine decarboxylase activity" evidence=IEA;IDA
GO:0033387 "putrescine biosynthetic process from ornithine" evidence=IEA
GO:0006596 "polyamine biosynthetic process" evidence=IEA
GO:0016831 "carboxy-lyase activity" evidence=IEA
GO:0003824 "catalytic activity" evidence=IEA
GO:0016829 "lyase activity" evidence=IEA
GO:0009446 "putrescine biosynthetic process" evidence=IMP
GO:0005737 "cytoplasm" evidence=IDA
GO:0015940 "pantothenate biosynthetic process" evidence=IMP
UNIPROTKB|I3LTY3 ODC1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|P11926 ODC1 "Ornithine decarboxylase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P27117 ODC1 "Ornithine decarboxylase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|3227 Odc1 "ornithine decarboxylase 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E2R8D9 ODC1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:97402 Odc1 "ornithine decarboxylase, structural 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
CGD|CAL0005099 SPE1 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|P78599 SPE1 "Ornithine decarboxylase" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms
UNIPROTKB|P27118 ODC1 "Ornithine decarboxylase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O22616DCOR_SOLLC4, ., 1, ., 1, ., 1, 70.51000.91350.8584N/Ano
P41931DCOR_CAEEL4, ., 1, ., 1, ., 1, 70.34610.90370.8672yesno
Q9UQW9DCOR_SCHPO4, ., 1, ., 1, ., 1, 70.38660.87160.8171yesno
P50134DCOR_DATST4, ., 1, ., 1, ., 1, 70.51780.91350.8584N/Ano
O50657DCLO_SELRU4, ., 1, ., 1, ., 1, 80.32710.82710.8524yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.1.10.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.V.1951.1
hypothetical protein (390 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.21677.1.1
Predicted protein (101 aa)
  •     0.402

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query405
cd00622362 cd00622, PLPDE_III_ODC, Type III Pyridoxal 5-phosp 1e-142
cd06831394 cd06831, PLPDE_III_ODC_like_AZI, Type III Pyridoxa 4e-65
cd06810368 cd06810, PLPDE_III_ODC_DapDC_like, Type III Pyrido 1e-63
COG0019394 COG0019, LysA, Diaminopimelate decarboxylase [Amin 2e-61
pfam02784245 pfam02784, Orn_Arg_deC_N, Pyridoxal-dependent deca 3e-59
cd06808211 cd06808, PLPDE_III, Type III Pyridoxal 5-phosphate 7e-31
cd06828373 cd06828, PLPDE_III_DapDC, Type III Pyridoxal 5-pho 2e-29
TIGR01048414 TIGR01048, lysA, diaminopimelate decarboxylase 4e-24
cd06841379 cd06841, PLPDE_III_MccE_like, Type III Pyridoxal 5 4e-20
pfam00278110 pfam00278, Orn_DAP_Arg_deC, Pyridoxal-dependent de 5e-18
cd06839382 cd06839, PLPDE_III_Btrk_like, Type III Pyridoxal 5 7e-18
TIGR03099398 TIGR03099, dCO2ase_PEP1, pyridoxal-dependent decar 3e-16
cd06840368 cd06840, PLPDE_III_Bif_AspK_DapDC, Type III Pyrido 8e-16
PRK08961861 PRK08961, PRK08961, bifunctional aspartate kinase/ 2e-14
cd06836379 cd06836, PLPDE_III_ODC_DapDC_like_1, Type III Pyri 1e-13
cd06842423 cd06842, PLPDE_III_Y4yA_like, Type III Pyridoxal 5 2e-13
PLN02537410 PLN02537, PLN02537, diaminopimelate decarboxylase 3e-11
cd06843377 cd06843, PLPDE_III_PvsE_like, Type III Pyridoxal 5 8e-09
cd06830409 cd06830, PLPDE_III_ADC, Type III Pyridoxal 5-phosp 4e-08
TIGR01273 624 TIGR01273, speA, arginine decarboxylase, biosynthe 4e-05
COG1166 652 COG1166, SpeA, Arginine decarboxylase (spermidine 0.001
>gnl|CDD|143482 cd00622, PLPDE_III_ODC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase Back     alignment and domain information 
 Score =  408 bits (1051), Expect = e-142
 Identities = 162/371 (43%), Positives = 211/371 (56%), Gaps = 35/371 (9%)

Query: 50  EVPFYLMDLGVVVSLYNHMISNLPMIHPHYAVKCNPEPALLEALAALGSNFDCGSRSEIE 109
           E PF ++DLG VV  Y      LP + P YAVKCNP+PA+L  LAALG+ FDC S+ EIE
Sbjct: 1   ETPFLVVDLGDVVRKYRRWKKALPRVRPFYAVKCNPDPAVLRTLAALGAGFDCASKGEIE 60

Query: 110 AVLLLDVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIK 169
            VL L VSP+RII+ANPCK +S I+YAA +GV L T DS +EL+KI    P + LL+RI 
Sbjct: 61  LVLGLGVSPERIIFANPCKSISDIRYAAELGVRLFTFDSEDELEKIAKHAPGAKLLLRIA 120

Query: 170 SPDDSGAKYPLDSKYGAGHHPQEIMPLLKAAEASGLSVVGVSFHVGSEATNFAAFRGAIA 229
             DDSGA  PL  K+GA   P+E   LL+ A+  GL+VVGVSFHVGS+ T+ +A+  AIA
Sbjct: 121 -TDDSGALCPLSRKFGA--DPEEARELLRRAKELGLNVVGVSFHVGSQCTDPSAYVDAIA 177

Query: 230 AAKAVFDTAAR-------------------TSNNKMRKLFKLI---FRELLPGSSLKVIS 267
            A+ VFD AA                           ++  +I     E  P   +++I+
Sbjct: 178 DAREVFDEAAELGFKLKLLDIGGGFPGSYDGVVPSFEEIAAVINRALDEYFPDEGVRIIA 237

Query: 268 EPGRFFAASAFTLYAQIIGKRVRGE---LREYWINDGKFGSLAWVTCDEAIAKCTPLPFA 324
           EPGR+  ASAFTL   +I KR RG+    R Y++NDG +GS   +  D        L   
Sbjct: 238 EPGRYLVASAFTLAVNVIAKRKRGDDDRERWYYLNDGVYGSFNEILFDHIRYPPRVL--- 294

Query: 325 SSFTTSKGLTRTYNSTVFGPTCDAFDEVFTGHKLPE-LEVNDWLVFSEMGAYTTACGTNF 383
                       Y S+++GPTCD+ D ++    LPE L V DWL+F  MGAYTTA  + F
Sbjct: 295 ---KDGGRDGELYPSSLWGPTCDSLDVIYEDVLLPEDLAVGDWLLFENMGAYTTAYASTF 351

Query: 384 NGYSTVAIPTY 394
           NG+    I   
Sbjct: 352 NGFPPPKIVYV 362

This subfamily is composed mainly of eukaryotic ornithine decarboxylases (ODC, EC 4.1.1.17) and ODC-like enzymes from prokaryotes represented by Vibrio vulnificus LysineOrnithine decarboxylase. These are fold type III PLP-dependent enzymes that differ from most bacterial ODCs which are fold type I PLP-dependent enzymes. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. Members of this subfamily contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity. Also members of this subfamily are proteins with homology to ODC but do not possess any catalytic activity, the Antizyme inhibitor (AZI) and ODC-paralogue (ODC-p). AZI binds to the regulatory protein Antizyme with a higher affinity than ODC and prevents ODC degradation. ODC-p is a novel ODC-like protein, present only in mammals, that is specifically exressed in the brain and testes. ODC-p may function as a tissue-specific antizyme inhibitory protein. Length = 362
>gnl|CDD|143504 cd06831, PLPDE_III_ODC_like_AZI, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor Back     alignment and domain information
>gnl|CDD|143485 cd06810, PLPDE_III_ODC_DapDC_like, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Ornithine and Diaminopimelate Decarboxylases, and Related Enzymes Back     alignment and domain information
>gnl|CDD|223098 COG0019, LysA, Diaminopimelate decarboxylase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|217230 pfam02784, Orn_Arg_deC_N, Pyridoxal-dependent decarboxylase, pyridoxal binding domain Back     alignment and domain information
>gnl|CDD|143484 cd06808, PLPDE_III, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Back     alignment and domain information
>gnl|CDD|143501 cd06828, PLPDE_III_DapDC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase Back     alignment and domain information
>gnl|CDD|233248 TIGR01048, lysA, diaminopimelate decarboxylase Back     alignment and domain information
>gnl|CDD|143508 cd06841, PLPDE_III_MccE_like, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme MccE Back     alignment and domain information
>gnl|CDD|215835 pfam00278, Orn_DAP_Arg_deC, Pyridoxal-dependent decarboxylase, C-terminal sheet domain Back     alignment and domain information
>gnl|CDD|143506 cd06839, PLPDE_III_Btrk_like, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Btrk Decarboxylase Back     alignment and domain information
>gnl|CDD|132143 TIGR03099, dCO2ase_PEP1, pyridoxal-dependent decarboxylase, exosortase A system-associated Back     alignment and domain information
>gnl|CDD|143507 cd06840, PLPDE_III_Bif_AspK_DapDC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bifunctional Aspartate Kinase/Diaminopimelate Decarboxylase Back     alignment and domain information
>gnl|CDD|236358 PRK08961, PRK08961, bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional Back     alignment and domain information
>gnl|CDD|143505 cd06836, PLPDE_III_ODC_DapDC_like_1, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Uncharacterized Proteins with similarity to Ornithine and Diaminopimelate Decarboxylases Back     alignment and domain information
>gnl|CDD|143509 cd06842, PLPDE_III_Y4yA_like, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Y4yA Back     alignment and domain information
>gnl|CDD|178152 PLN02537, PLN02537, diaminopimelate decarboxylase Back     alignment and domain information
>gnl|CDD|143510 cd06843, PLPDE_III_PvsE_like, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme PvsE Back     alignment and domain information
>gnl|CDD|143503 cd06830, PLPDE_III_ADC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Arginine Decarboxylase Back     alignment and domain information
>gnl|CDD|233337 TIGR01273, speA, arginine decarboxylase, biosynthetic Back     alignment and domain information
>gnl|CDD|224088 COG1166, SpeA, Arginine decarboxylase (spermidine biosynthesis) [Amino acid transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 405
KOG0622448 consensus Ornithine decarboxylase [Amino acid tran 100.0
cd06831394 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosph 100.0
COG0019394 LysA Diaminopimelate decarboxylase [Amino acid tra 100.0
cd06840368 PLPDE_III_Bif_AspK_DapDC Type III Pyridoxal 5-phos 100.0
cd06830409 PLPDE_III_ADC Type III Pyridoxal 5-phosphate (PLP) 100.0
cd00622362 PLPDE_III_ODC Type III Pyridoxal 5-phosphate (PLP) 100.0
PLN02537410 diaminopimelate decarboxylase 100.0
TIGR01048417 lysA diaminopimelate decarboxylase. This family co 100.0
cd06836379 PLPDE_III_ODC_DapDC_like_1 Type III Pyridoxal 5-ph 100.0
cd06828373 PLPDE_III_DapDC Type III Pyridoxal 5-phosphate (PL 100.0
PRK11165420 diaminopimelate decarboxylase; Provisional 100.0
cd06839382 PLPDE_III_Btrk_like Type III Pyridoxal 5-phosphate 100.0
TIGR03099398 dCO2ase_PEP1 pyridoxal-dependent decarboxylase, ex 100.0
cd06810368 PLPDE_III_ODC_DapDC_like Type III Pyridoxal 5-phos 100.0
cd06843377 PLPDE_III_PvsE_like Type III Pyridoxal 5-phosphate 100.0
cd06841379 PLPDE_III_MccE_like Type III Pyridoxal 5-phosphate 100.0
cd06829346 PLPDE_III_CANSDC Type III Pyridoxal 5-phosphate (P 100.0
PRK08961861 bifunctional aspartate kinase/diaminopimelate deca 100.0
TIGR01047380 nspC carboxynorspermidine decarboxylase. This prot 100.0
cd06842423 PLPDE_III_Y4yA_like Type III Pyridoxal 5-phosphate 100.0
PRK05354634 arginine decarboxylase; Provisional 100.0
TIGR01273624 speA arginine decarboxylase, biosynthetic. A disti 100.0
PF02784251 Orn_Arg_deC_N: Pyridoxal-dependent decarboxylase, 100.0
PLN02439559 arginine decarboxylase 100.0
cd00430367 PLPDE_III_AR Type III Pyridoxal 5-phosphate (PLP)- 100.0
TIGR00492367 alr alanine racemase. This enzyme interconverts L- 100.0
PRK00053363 alr alanine racemase; Reviewed 100.0
cd06827354 PLPDE_III_AR_proteobact Type III Pyridoxal 5-phosp 100.0
PRK13340406 alanine racemase; Reviewed 100.0
cd06826365 PLPDE_III_AR2 Type III Pyridoxal 5-phosphate (PLP) 100.0
COG0787360 Alr Alanine racemase [Cell envelope biogenesis, ou 99.98
cd06825368 PLPDE_III_VanT Type III Pyridoxal 5-phosphate (PLP 99.97
PRK03646355 dadX alanine racemase; Reviewed 99.97
PRK11930822 putative bifunctional UDP-N-acetylmuramoyl-tripept 99.96
cd06808211 PLPDE_III Type III Pyridoxal 5-phosphate (PLP)-Dep 99.95
cd06815353 PLPDE_III_AR_like_1 Type III Pyridoxal 5-phosphate 99.94
cd06812374 PLPDE_III_DSD_D-TA_like_1 Type III Pyridoxal 5-pho 99.94
cd06819358 PLPDE_III_LS_D-TA Type III Pyridoxal 5-phosphate ( 99.94
cd06811382 PLPDE_III_yhfX_like Type III Pyridoxal 5-phosphate 99.93
COG1166 652 SpeA Arginine decarboxylase (spermidine biosynthes 99.91
cd06818382 PLPDE_III_cryptic_DSD Type III Pyridoxal 5-phospha 99.9
cd06813388 PLPDE_III_DSD_D-TA_like_2 Type III Pyridoxal 5-pho 99.9
cd06820353 PLPDE_III_LS_D-TA_like Type III Pyridoxal 5-phosph 99.89
cd06821361 PLPDE_III_D-TA Type III Pyridoxal 5-phosphate (PLP 99.89
PF00278116 Orn_DAP_Arg_deC: Pyridoxal-dependent decarboxylase 99.86
cd07376345 PLPDE_III_DSD_D-TA_like Type III Pyridoxal 5-phosp 99.81
cd06817389 PLPDE_III_DSD Type III Pyridoxal 5-phosphate (PLP) 99.81
cd06814379 PLPDE_III_DSD_D-TA_like_3 Type III Pyridoxal 5-pho 99.79
PF01168218 Ala_racemase_N: Alanine racemase, N-terminal domai 99.75
cd00635222 PLPDE_III_YBL036c_like Type III Pyridoxal 5-phosph 99.75
cd06824224 PLPDE_III_Yggs_like Pyridoxal 5-phosphate (PLP)-bi 99.58
TIGR00044229 pyridoxal phosphate enzyme, YggS family. Members o 99.52
COG3616368 Predicted amino acid aldolase or racemase [Amino a 99.41
COG3457353 Predicted amino acid racemase [Amino acid transpor 99.4
PF00842129 Ala_racemase_C: Alanine racemase, C-terminal domai 98.37
cd06822227 PLPDE_III_YBL036c_euk Pyridoxal 5-phosphate (PLP)- 98.29
COG0325228 Predicted enzyme with a TIM-barrel fold [General f 97.77
KOG3157244 consensus Proline synthetase co-transcribed protei 95.32
cd07948262 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate s 91.63
cd03174265 DRE_TIM_metallolyase DRE-TIM metallolyase superfam 86.63
cd07939259 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and 86.56
PF01136233 Peptidase_U32: Peptidase family U32 This is family 84.49
cd07940268 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N- 83.11
TIGR02090363 LEU1_arch isopropylmalate/citramalate/homocitrate 82.8
>KOG0622 consensus Ornithine decarboxylase [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1e-73  Score=541.41  Aligned_cols=368  Identities=40%  Similarity=0.679  Sum_probs=328.9

Q ss_pred             eEEEeecCCc------HHHHHHHH--Hhhc--CCCCCccEEEEeHHHHHHHHHHHHHhCCCCceeeeeccCCcHHHHHHH
Q 037610           24 RVTTVVTKDE------LTEFMQST--ILKR--QEFDEVPFYLMDLGVVVSLYNHMISNLPMIHPHYAVKCNPEPALLEAL   93 (405)
Q Consensus        24 ~~~~~~~~~~------~~~~~~~~--~~~~--~~~~t~P~~v~d~~~l~~n~~~~~~~~~~~~i~yavKaN~~~~vl~~l   93 (405)
                      +++++..+.+      .+.+|++.  +...  ..... ||||+|++.|.+++++|++.+|+++++||||||+++.|+++|
T Consensus        20 ~~~~~~e~~~~~~~~a~r~~i~e~~~~~~~~~~~e~~-aFfv~Dl~~I~Rkl~~w~~~LprV~PfYAVKCN~dp~vl~~L   98 (448)
T KOG0622|consen   20 KVEVLDEGSSKTLTGALRNLIEEGTLVAERMETGEKQ-AFFVADLGAIERKLEAWKKALPRVRPFYAVKCNSDPKVLRLL   98 (448)
T ss_pred             eeEecccccchhhhHHHHHHHHHhhhhhhhccccccC-ceEEecHHHHHHHHHHHHHhcccCCCceeEEeCCCHHHHHHH
Confidence            4566666655      77777765  3332  33467 999999999999999999999999999999999999999999


Q ss_pred             HHcCCeEEEcCHHHHHHHHhCCCCCCcEEEcCCCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHCCCCeEEEEEecCCC
Q 037610           94 AALGSNFDCGSRSEIEAVLLLDVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKSPDD  173 (405)
Q Consensus        94 ~~~G~g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gv~~i~vds~~el~~i~~~~~~~~v~lRi~~~~~  173 (405)
                      ++.|+||+|+|..|+++++..|++|+||||.+|+|+.+.|++|++.||...++||.+||.++.+.+|+++++|||+++.+
T Consensus        99 a~lG~gfdcaSk~E~~lvl~~gv~P~riIyanpcK~~s~IkyAa~~gV~~~tfDne~el~kv~~~hP~a~llLrIatdds  178 (448)
T KOG0622|consen   99 ASLGCGFDCASKNELDLVLSLGVSPERIIYANPCKQVSQIKYAAKHGVSVMTFDNEEELEKVAKSHPNANLLLRIATDDS  178 (448)
T ss_pred             HHcCccceecChHHHHHHHhcCCChHHeEecCCCccHHHHHHHHHcCCeEEeecCHHHHHHHHHhCCCceEEEEEccCCC
Confidence            99999999999999999999999999999999999999999999999998999999999999999999999999999886


Q ss_pred             CCCCCCCCCCCCCCCChhhHHHHHHHHHHcCCeEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCchhHH----
Q 037610          174 SGAKYPLDSKYGAGHHPQEIMPLLKAAEASGLSVVGVSFHVGSEATNFAAFRGAIAAAKAVFDTAARTSNNKMRKL----  249 (405)
Q Consensus       174 ~~~~~~~~srfGi~~~~~e~~~~~~~~~~~~l~l~Gih~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~G~~~~~~l----  249 (405)
                      . +....+.|||+  +.+++..+++.+++.+++++|+|||+||.+.+++.|.+++..++.+++++.++|+ .+.+|    
T Consensus       179 ~-a~~~l~~KFG~--~~~~~~~lLd~ak~l~lnvvGvsfHvGSgc~d~~~y~~Ai~dAr~vfd~g~e~Gf-~m~~LdiGG  254 (448)
T KOG0622|consen  179 T-ATCRLNLKFGC--SLDNCRHLLDMAKELELNVVGVSFHVGSGCTDLQAYRDAISDARNVFDMGAELGF-EMDILDIGG  254 (448)
T ss_pred             c-ccccccCccCC--CHHHHHHHHHHHHHcCceEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHhcCc-eEEEeecCC
Confidence            4 45666799999  9999999999999999999999999999999999999999999999999988774 33322    


Q ss_pred             ------------------HHHHHHHhCCCCCcEEEECCchhhhccceeEEEEEEEEEEeCC------------eeEEEEe
Q 037610          250 ------------------FKLIFRELLPGSSLKVISEPGRFFAASAFTLYAQIIGKRVRGE------------LREYWIN  299 (405)
Q Consensus       250 ------------------i~~~l~~~~~~~~~~l~~EPGr~lv~~a~~l~t~V~~~k~~~~------------~~~~~i~  299 (405)
                                        +|.+++.+|++.++.++.|||||+|+.|++|.+.|+++|..+.            +..|+++
T Consensus       255 Gf~g~~~~~~~fe~i~~~In~ald~~Fp~~~v~iiaEpGRf~VasafTLa~nViakk~v~~~~~~~d~~d~~~~~mYy~n  334 (448)
T KOG0622|consen  255 GFPGDEGHAVVFEEIADVINTALDLYFPSGGVDIIAEPGRFFVASAFTLAVNVIAKKEVDAKKITSDDEDDEVTFMYYVN  334 (448)
T ss_pred             CCCCccchhhhhhhHHHHHHHHHHHhCCCCCceEEeccchheeechheeeeeeeeeeeccccccCccccccCceEEEEEc
Confidence                              7889999999559999999999999999999999999998632            2369999


Q ss_pred             cCCCCCChhhhhhccccccccCCCCCCCCccCCCCceeeEEEeccCcCCCCeeecCCCCCCCCCCCEEEEcCCCcccccc
Q 037610          300 DGKFGSLAWVTCDEAIAKCTPLPFASSFTTSKGLTRTYNSTVFGPTCDAFDEVFTGHKLPELEVNDWLVFSEMGAYTTAC  379 (405)
Q Consensus       300 dg~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~G~~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~~~  379 (405)
                      ||+|++|+|++||++++.+.+..+..+      +...++.+|+||+|++.|++.++..+|.+.+|||++|.+|||||+++
T Consensus       335 DGVYGsfnciL~D~~~~i~~~~~~~~e------~e~~~~ssIwGPtcD~lD~i~~~~~lp~l~vGdwLvf~~mGAYT~~~  408 (448)
T KOG0622|consen  335 DGVYGSFNCILFDHQHPIPLVVKDPSE------EEPLYKSSIWGPTCDGLDVIAEDCLLPQLNVGDWLVFENMGAYTMSA  408 (448)
T ss_pred             cceeeeechhhhcccCCcccccCCCcc------ccceeeeeeecCCcchHHHHHhhccCCCCCccCeEEEccCCcccccc
Confidence            999999999999999987655544332      33467899999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCceEEEEeCCccccc
Q 037610          380 GTNFNGYSTVAIPTYVVRSNQTLLA  404 (405)
Q Consensus       380 ~~~fn~~~~p~~~~~~~~s~~~~~~  404 (405)
                      +|.||++++|.  +||.+|..+|-.
T Consensus       409 aS~fNgf~~p~--~~y~~s~~~~e~  431 (448)
T KOG0622|consen  409 ASTFNGFQRPK--IYYVMSDGDWEK  431 (448)
T ss_pred             ccccCCCCCCc--eEEEeccccHHH
Confidence            99999999987  699999988854

>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor Back     alignment and domain information
>COG0019 LysA Diaminopimelate decarboxylase [Amino acid transport and metabolism] Back     alignment and domain information
>cd06840 PLPDE_III_Bif_AspK_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bifunctional Aspartate Kinase/Diaminopimelate Decarboxylase Back     alignment and domain information
>cd06830 PLPDE_III_ADC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Arginine Decarboxylase Back     alignment and domain information
>cd00622 PLPDE_III_ODC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase Back     alignment and domain information
>PLN02537 diaminopimelate decarboxylase Back     alignment and domain information
>TIGR01048 lysA diaminopimelate decarboxylase Back     alignment and domain information
>cd06836 PLPDE_III_ODC_DapDC_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Uncharacterized Proteins with similarity to Ornithine and Diaminopimelate Decarboxylases Back     alignment and domain information
>cd06828 PLPDE_III_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase Back     alignment and domain information
>PRK11165 diaminopimelate decarboxylase; Provisional Back     alignment and domain information
>cd06839 PLPDE_III_Btrk_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Btrk Decarboxylase Back     alignment and domain information
>TIGR03099 dCO2ase_PEP1 pyridoxal-dependent decarboxylase, exosortase system type 1 associated Back     alignment and domain information
>cd06810 PLPDE_III_ODC_DapDC_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Ornithine and Diaminopimelate Decarboxylases, and Related Enzymes Back     alignment and domain information
>cd06843 PLPDE_III_PvsE_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme PvsE Back     alignment and domain information
>cd06841 PLPDE_III_MccE_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme MccE Back     alignment and domain information
>cd06829 PLPDE_III_CANSDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Carboxynorspermidine Decarboxylase Back     alignment and domain information
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional Back     alignment and domain information
>TIGR01047 nspC carboxynorspermidine decarboxylase Back     alignment and domain information
>cd06842 PLPDE_III_Y4yA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Y4yA Back     alignment and domain information
>PRK05354 arginine decarboxylase; Provisional Back     alignment and domain information
>TIGR01273 speA arginine decarboxylase, biosynthetic Back     alignment and domain information
>PF02784 Orn_Arg_deC_N: Pyridoxal-dependent decarboxylase, pyridoxal binding domain; InterPro: IPR022644 These enzymes are collectively known as group IV decarboxylases [] Back     alignment and domain information
>PLN02439 arginine decarboxylase Back     alignment and domain information
>cd00430 PLPDE_III_AR Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase Back     alignment and domain information
>TIGR00492 alr alanine racemase Back     alignment and domain information
>PRK00053 alr alanine racemase; Reviewed Back     alignment and domain information
>cd06827 PLPDE_III_AR_proteobact Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases Back     alignment and domain information
>PRK13340 alanine racemase; Reviewed Back     alignment and domain information
>cd06826 PLPDE_III_AR2 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme, Alanine Racemase 2 Back     alignment and domain information
>COG0787 Alr Alanine racemase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>cd06825 PLPDE_III_VanT Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, VanT and similar proteins Back     alignment and domain information
>PRK03646 dadX alanine racemase; Reviewed Back     alignment and domain information
>PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional Back     alignment and domain information
>cd06808 PLPDE_III Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Back     alignment and domain information
>cd06815 PLPDE_III_AR_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase-like 1 Back     alignment and domain information
>cd06812 PLPDE_III_DSD_D-TA_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 1 Back     alignment and domain information
>cd06819 PLPDE_III_LS_D-TA Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Low Specificity D-Threonine Aldolase Back     alignment and domain information
>cd06811 PLPDE_III_yhfX_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme yhfX Back     alignment and domain information
>COG1166 SpeA Arginine decarboxylase (spermidine biosynthesis) [Amino acid transport and metabolism] Back     alignment and domain information
>cd06818 PLPDE_III_cryptic_DSD Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bacterial Cryptic D-Serine Dehydratase Back     alignment and domain information
>cd06813 PLPDE_III_DSD_D-TA_like_2 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 2 Back     alignment and domain information
>cd06820 PLPDE_III_LS_D-TA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Low Specificity D-Threonine Aldolase-like Back     alignment and domain information
>cd06821 PLPDE_III_D-TA Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme D-Threonine Aldolase Back     alignment and domain information
>PF00278 Orn_DAP_Arg_deC: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; InterPro: IPR022643 These enzymes are collectively known as group IV decarboxylases [] Back     alignment and domain information
>cd07376 PLPDE_III_DSD_D-TA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase Back     alignment and domain information
>cd06817 PLPDE_III_DSD Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Eukaryotic D-Serine Dehydratase Back     alignment and domain information
>cd06814 PLPDE_III_DSD_D-TA_like_3 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 3 Back     alignment and domain information
>PF01168 Ala_racemase_N: Alanine racemase, N-terminal domain; InterPro: IPR001608 Alanine racemase plays a role in providing the D-alanine required for cell wall biosynthesis by isomerising L-alanine to D-alanine Back     alignment and domain information
>cd00635 PLPDE_III_YBL036c_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins Back     alignment and domain information
>cd06824 PLPDE_III_Yggs_like Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Yggs-like proteins Back     alignment and domain information
>TIGR00044 pyridoxal phosphate enzyme, YggS family Back     alignment and domain information
>COG3616 Predicted amino acid aldolase or racemase [Amino acid transport and metabolism] Back     alignment and domain information
>COG3457 Predicted amino acid racemase [Amino acid transport and metabolism] Back     alignment and domain information
>PF00842 Ala_racemase_C: Alanine racemase, C-terminal domain; InterPro: IPR011079 Alanine racemase (5 Back     alignment and domain information
>cd06822 PLPDE_III_YBL036c_euk Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Eukaryotic YBL036c-like proteins Back     alignment and domain information
>COG0325 Predicted enzyme with a TIM-barrel fold [General function prediction only] Back     alignment and domain information
>KOG3157 consensus Proline synthetase co-transcribed protein [General function prediction only] Back     alignment and domain information
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain Back     alignment and domain information
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily Back     alignment and domain information
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain Back     alignment and domain information
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification Back     alignment and domain information
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain Back     alignment and domain information
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query405
1njj_A425 Crystal Structure Determination Of T. Brucei Ornith 3e-56
1qu4_A425 Crystal Structure Of Trypanosoma Brucei Ornithine D 4e-56
1szr_C425 A Dimer Interface Mutant Of Ornithine Decarboxylase 1e-55
2tod_A425 Ornithine Decarboxylase From Trypanosoma Brucei K69 2e-55
2on3_A461 A Structural Insight Into The Inhibition Of Human A 4e-55
2oo0_A471 A Structural Insight Into The Inhibition Of Human A 4e-55
1d7k_A421 Crystal Structure Of Human Ornithine Decarboxylase 6e-55
7odc_A424 Crystal Structure Ornithine Decarboxylase From Mous 2e-53
2nv9_A372 The X-Ray Crystal Structure Of The Paramecium Bursa 2e-46
2nva_A372 The X-Ray Crystal Structure Of The Paramecium Bursa 2e-46
3btn_A448 Crystal Structure Of Antizyme Inhibitor, An Ornithi 4e-41
4aib_A395 Crystal Structure Of Ornithine Decarboxylase From E 1e-40
2plj_A419 Crystal Structure Of LysineORNITHINE DECARBOXYLASE 9e-30
2qgh_A425 Crystal Structure Of Diaminopimelate Decarboxylase 1e-11
3c5q_A425 Crystal Structure Of Diaminopimelate Decarboxylase 1e-11
3n2b_A441 1.8 Angstrom Resolution Crystal Structure Of Diamin 8e-10
1knw_A425 Crystal Structure Of Diaminopimelate Decarboxylase 2e-05
2j66_A428 Structural Characterisation Of Btrk Decarboxylase F 1e-04
2p3e_A420 Crystal Structure Of Aq1208 From Aquifex Aeolicus L 5e-04
>pdb|1NJJ|A Chain A, Crystal Structure Determination Of T. Brucei Ornithine Decarboxylase Bound To D-ornithine And To G418 Length = 425 Back     alignment and structure 
Iteration: 1

 Score =  215 bits (548), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 132/389 (33%), Positives = 195/389 (50%), Gaps = 52/389 (13%)
Query: 52  PFYLMDLGVVVSLYNHMISNLPMIHPHYAVKCNXXXXXXXXXXXXGSNFDCGSRSEIEAV 111
           PF++ DLG +V  +      LP + P YAVKCN            G+ FDC S +EI+ V
Sbjct: 39  PFFVADLGDIVRKHETWKKCLPRVTPFYAVKCNDDWRVLGTLAALGTGFDCASNTEIQRV 98
Query: 112 LLLDVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKSP 171
             + V P++IIYANPCK +SHI+YA   GV++ T D V+EL+K+   HPK+ +++RI S 
Sbjct: 99  RGIGVPPEKIIYANPCKQISHIRYARDSGVDVMTFDCVDELEKVAKTHPKAKMVLRI-ST 157
Query: 172 DDSGAKYPLDSKYGAGHHPQEIMPLLKAAEASGLSVVGVSFHVGSEXXXXXXXXXXXXXX 231
           DDS A+  L  K+GA    ++   +L+ A+   + V GVSFHVGS               
Sbjct: 158 DDSLARCRLSVKFGA--KVEDCRFILEQAKKLNIDVTGVSFHVGSGSTDASTFAQAISDS 215
Query: 232 XXXXDTAARTSNN------------------KMRKLFKLIFRELL----PGSSLKVISEP 269
               D       N                  K  ++  +I   L     P   L +++EP
Sbjct: 216 RFVFDMGTELGFNMHILDIGGGFPGTRDAPLKFEEIAGVINNALEKHFPPDLKLTIVAEP 275
Query: 270 GRFFAASAFTLYAQIIGKRVRGELRE--------------YWINDGKFGSLAWVTCDEAI 315
           GR++ ASAFTL   +I K+V   ++               Y++NDG +GS   +  D A+
Sbjct: 276 GRYYVASAFTLAVNVIAKKVTPGVQTDVGAHAESNAQSFMYYVNDGVYGSFNCILYDHAV 335
Query: 316 AKCTPLPFASSFTTSKGLTRTYNSTVFGPTCDAFDEVFTGHKLPELEVNDWLVFSEMGAY 375
            +  PLP        K     Y S+V+GPTCD  D++   + LPE++V +WL+F +MGAY
Sbjct: 336 VR--PLPQREPIPNEK----LYPSSVWGPTCDGLDQIVERYYLPEMQVGEWLLFEDMGAY 389
Query: 376 TTACGTNFNGYSTVAI-------PTYVVR 397
           T    ++FNG+ +  I       P +VVR
Sbjct: 390 TVVGTSSFNGFQSPTIYYVVSGLPDHVVR 418
>pdb|1QU4|A Chain A, Crystal Structure Of Trypanosoma Brucei Ornithine Decarboxylase Length = 425 Back     alignment and structure
>pdb|1SZR|C Chain C, A Dimer Interface Mutant Of Ornithine Decarboxylase Reveals Structure Of Gem Diamine Intermediate Length = 425 Back     alignment and structure
>pdb|2TOD|A Chain A, Ornithine Decarboxylase From Trypanosoma Brucei K69a Mutant In Complex With Alpha-Difluoromethylornithine Length = 425 Back     alignment and structure
>pdb|2ON3|A Chain A, A Structural Insight Into The Inhibition Of Human And Leishmania Donovani Ornithine Decarboxylases By 3-Aminooxy- 1-Aminopropane Length = 461 Back     alignment and structure
>pdb|2OO0|A Chain A, A Structural Insight Into The Inhibition Of Human And Leishmania Donovani Ornithine Decarboxylases By 3-Aminooxy-1-Aminopropane Length = 471 Back     alignment and structure
>pdb|1D7K|A Chain A, Crystal Structure Of Human Ornithine Decarboxylase At 2.1 Angstroms Resolution Length = 421 Back     alignment and structure
>pdb|7ODC|A Chain A, Crystal Structure Ornithine Decarboxylase From Mouse, Truncated 37 Residues From The C-Terminus, To 1.6 Angstrom Resolution Length = 424 Back     alignment and structure
>pdb|2NV9|A Chain A, The X-Ray Crystal Structure Of The Paramecium Bursaria Chlorella Virus Arginine Decarboxylase Length = 372 Back     alignment and structure
>pdb|2NVA|A Chain A, The X-Ray Crystal Structure Of The Paramecium Bursaria Chlorella Virus Arginine Decarboxylase Bound To Agmatine Length = 372 Back     alignment and structure
>pdb|3BTN|A Chain A, Crystal Structure Of Antizyme Inhibitor, An Ornithine Decarboxylase Homologous Protein Length = 448 Back     alignment and structure
>pdb|4AIB|A Chain A, Crystal Structure Of Ornithine Decarboxylase From Entamoeba Histolytica. Length = 395 Back     alignment and structure
>pdb|2PLJ|A Chain A, Crystal Structure Of LysineORNITHINE DECARBOXYLASE COMPLEXED WITH Putrescine From Vibrio Vulnificus Length = 419 Back     alignment and structure
>pdb|2QGH|A Chain A, Crystal Structure Of Diaminopimelate Decarboxylase From Helicobacter Pylori Complexed With L-Lysine Length = 425 Back     alignment and structure
>pdb|3C5Q|A Chain A, Crystal Structure Of Diaminopimelate Decarboxylase (I148l Mutant) From Helicobacter Pylori Complexed With L-Lysine Length = 425 Back     alignment and structure
>pdb|3N2B|A Chain A, 1.8 Angstrom Resolution Crystal Structure Of Diaminopimelate Decarboxylase (Lysa) From Vibrio Cholerae. Length = 441 Back     alignment and structure
>pdb|1KNW|A Chain A, Crystal Structure Of Diaminopimelate Decarboxylase Length = 425 Back     alignment and structure
>pdb|2J66|A Chain A, Structural Characterisation Of Btrk Decarboxylase From Butirosin Biosynthesis Length = 428 Back     alignment and structure
>pdb|2P3E|A Chain A, Crystal Structure Of Aq1208 From Aquifex Aeolicus Length = 420 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query405
2nva_A372 Arginine decarboxylase, A207R protein; PLP, TIM ba 1e-142
3btn_A448 Antizyme inhibitor 1; TIM-like A/B barrel domain a 1e-135
1f3t_A425 ODC, ornithine decarboxylase; beta-alpha-barrel, m 1e-134
7odc_A424 Protein (ornithine decarboxylase); pyridoxal-5'-ph 1e-134
2plj_A419 Lysine/ornithine decarboxylase; type IV decarboxyl 1e-133
2oo0_A471 ODC, ornithine decarboxylase; beta-alpha barrel, s 1e-132
3mt1_A365 Putative carboxynorspermidine decarboxylase prote; 2e-28
2j66_A428 BTRK, decarboxylase; butirosin, AHBA biosynthesis, 2e-27
3n29_A418 Carboxynorspermidine decarboxylase; lyase; HET: PL 4e-27
1knw_A425 Diaminopimelate decarboxylase; pyridoxal-phosphate 2e-26
2p3e_A420 Diaminopimelate decarboxylase; southeast collabora 8e-26
2qgh_A425 Diaminopimelate decarboxylase; lyase; HET: PLP LYS 5e-25
3vab_A443 Diaminopimelate decarboxylase 1; structural genomi 2e-24
2yxx_A386 Diaminopimelate decarboxylase; TM1517, TIM beta/al 6e-24
3n2b_A441 Diaminopimelate decarboxylase; LYSA, lyase, struct 1e-23
1twi_A434 Diaminopimelate decarboxylase; antibiotic resistan 2e-21
3nzq_A 666 ADC, biosynthetic arginine decarboxylase; alpha-be 2e-18
2o0t_A467 Diaminopimelate decarboxylase; PLP binding enzyme, 1e-17
3nzp_A 619 Arginine decarboxylase; alpha-beta protein, struct 4e-17
3n2o_A 648 ADC, biosynthetic arginine decarboxylase; lyase; H 9e-17
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-05
>2nva_A Arginine decarboxylase, A207R protein; PLP, TIM barrel, eukaryotic ODC- like, lyase; HET: PL2; 1.80A {Paramecium bursaria chlorella virus 1} PDB: 2nv9_A* Length = 372 Back     alignment and structure
 Score =  408 bits (1051), Expect = e-142
 Identities = 123/384 (32%), Positives = 187/384 (48%), Gaps = 33/384 (8%)

Query: 34  LTEFMQSTILKRQEFDEVPFYLMDLGVVVSLYNHMISNLPMIHPHYAVKCNPEPALLEAL 93
           +   + + ILK        FY+    +V  L +      P + PHYAVKCN +  LL+ +
Sbjct: 1   MNSVVNN-ILKAHPHQTKSFYVSSPKIVEDLIDQWTILFPRVTPHYAVKCNNDEVLLKTM 59

Query: 94  AALGSNFDCGSRSEIEAVLLLDVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELD 153
                NFDC S SEI+ V+ + VSP RII+A+  K +  + +A   GV++ T DS  ELD
Sbjct: 60  CDKNVNFDCASSSEIKKVIQIGVSPSRIIFAHTMKTIDDLIFAKDQGVDIATFDSSFELD 119

Query: 154 KIRNWHPKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLKAAEASGLSVVGVSFH 213
           KI  +HP   +++RI+  DD  A   L +K+GA  +  EI  LL+ A+   + V+G+SFH
Sbjct: 120 KIHTYHPNCKMILRIR-CDDPNATVQLGNKFGA--NEDEIRHLLEYAKQLDIEVIGISFH 176

Query: 214 VGSEATNFAAFRGAIAAAKAVFDTAAR------------------TSNNKMRKLFKLI-- 253
           VGS + N  A+  AI ++K  F+ A                            +   I  
Sbjct: 177 VGSGSRNPEAYYRAIKSSKEAFNEAISVGHKPYILDIGGGLHADIDEGELSTYMSDYIND 236

Query: 254 -FRELLPGSSLKVISEPGRFFAASAFTLYAQIIGKRVRGELREYWINDGKFGSLAWVTCD 312
             ++  P  ++ +++EPGRFFA     L  Q+IGKRVR  L EY+ N+  +G  + V  +
Sbjct: 237 AIKDFFPEDTVTIVAEPGRFFAEHYSVLATQVIGKRVRDGLYEYFFNESTYGGFSNVIFE 296

Query: 313 EAIAKCTPLPFASSFTTSKGLTRTYNSTVFGPTCDAFDEVFTGHKLPELEVNDWLVFSEM 372
           +++     L                 S ++G TCD  D +     LPEL + DW+ F   
Sbjct: 297 KSVPTPQLL------RDVPDDEEYVPSVLYGCTCDGVDVINHNVALPELHIGDWVYFPSW 350

Query: 373 GAYTTACGTNFNGYSTVAIPTYVV 396
           GAYT    T+FNG+    +  Y +
Sbjct: 351 GAYTNVLTTSFNGFGEYDV--YYI 372
>3btn_A Antizyme inhibitor 1; TIM-like A/B barrel domain and A sheet domain, structural genomics, israel structural proteomics center, ISPC; 2.05A {Mus musculus} Length = 448 Back     alignment and structure
>1f3t_A ODC, ornithine decarboxylase; beta-alpha-barrel, modified greek KEY beta-sheet, lyase; HET: PLP; 2.00A {Trypanosoma brucei} SCOP: b.49.2.3 c.1.6.1 PDB: 1qu4_A* 1szr_C* 2tod_A* 1njj_A* Length = 425 Back     alignment and structure
>7odc_A Protein (ornithine decarboxylase); pyridoxal-5'-phosphate, PLP, group IV decarboxylase, polyami parasitical, chemotherapy target, putrescine; HET: PLP; 1.60A {Mus musculus} SCOP: b.49.2.3 c.1.6.1 PDB: 2on3_A 1d7k_A* Length = 424 Back     alignment and structure
>2plj_A Lysine/ornithine decarboxylase; type IV decarboxylase, beta/alpha barrel, beta barrel, lyase; HET: P3T; 1.70A {Vibrio vulnificus} PDB: 2plk_A* Length = 419 Back     alignment and structure
>2oo0_A ODC, ornithine decarboxylase; beta-alpha barrel, sheet, lyase; HET: PLP; 1.90A {Homo sapiens} Length = 471 Back     alignment and structure
>3mt1_A Putative carboxynorspermidine decarboxylase prote; PSI2, MCSG, structural genomics; 2.50A {Sinorhizobium meliloti} Length = 365 Back     alignment and structure
>2j66_A BTRK, decarboxylase; butirosin, AHBA biosynthesis, lyase; HET: PLP; 1.65A {Bacillus circulans} Length = 428 Back     alignment and structure
>3n29_A Carboxynorspermidine decarboxylase; lyase; HET: PLP; 1.90A {Campylobacter jejuni subsp} Length = 418 Back     alignment and structure
>1knw_A Diaminopimelate decarboxylase; pyridoxal-phosphate, decarboxylation, lysin barrel, lyase; HET: PLP MES; 2.10A {Escherichia coli} SCOP: b.49.2.3 c.1.6.1 PDB: 1ko0_A* Length = 425 Back     alignment and structure
>2p3e_A Diaminopimelate decarboxylase; southeast collaboratory for struct genomics, riken spring-8 center; 1.99A {Aquifex aeolicus} Length = 420 Back     alignment and structure
>2qgh_A Diaminopimelate decarboxylase; lyase; HET: PLP LYS; 2.30A {Helicobacter pylori} PDB: 3c5q_A* Length = 425 Back     alignment and structure
>3vab_A Diaminopimelate decarboxylase 1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: LLP; 2.10A {Brucella melitensis BV} Length = 443 Back     alignment and structure
>2yxx_A Diaminopimelate decarboxylase; TM1517, TIM beta/alpha barrel fold, lyase, structural genomi NPPSFA; HET: PLP; 1.70A {Thermotoga maritima} Length = 386 Back     alignment and structure
>3n2b_A Diaminopimelate decarboxylase; LYSA, lyase, structural genom center for structural genomics of infectious diseases, CSGI; 1.80A {Vibrio cholerae} Length = 441 Back     alignment and structure
>1twi_A Diaminopimelate decarboxylase; antibiotic resistance, lysine biosynthesis, structural genomics, NYSGXRC, PSI; HET: LYS PLP; 2.00A {Methanocaldococcus jannaschii} SCOP: b.49.2.3 c.1.6.1 PDB: 1tuf_A* Length = 434 Back     alignment and structure
>3nzq_A ADC, biosynthetic arginine decarboxylase; alpha-beta protein, structural genomics, PSI-biology, protei structure initiative; 3.10A {Escherichia coli} Length = 666 Back     alignment and structure
>2o0t_A Diaminopimelate decarboxylase; PLP binding enzyme, lysine biosynthesis, STRU genomics, TB structural genomics consortium, TBSGC; HET: LLP; 2.33A {Mycobacterium tuberculosis} PDB: 1hkv_A* 1hkw_A Length = 467 Back     alignment and structure
>3nzp_A Arginine decarboxylase; alpha-beta protein, structural genomics, PSI-biology, protei structure initiative; HET: PLP; 3.00A {Campylobacter jejuni subsp} Length = 619 Back     alignment and structure
>3n2o_A ADC, biosynthetic arginine decarboxylase; lyase; HET: PLP; 2.30A {Vibrio vulnificus} Length = 648 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query405
7odc_A424 Protein (ornithine decarboxylase); pyridoxal-5'-ph 100.0
2oo0_A471 ODC, ornithine decarboxylase; beta-alpha barrel, s 100.0
3btn_A448 Antizyme inhibitor 1; TIM-like A/B barrel domain a 100.0
1f3t_A425 ODC, ornithine decarboxylase; beta-alpha-barrel, m 100.0
3vab_A443 Diaminopimelate decarboxylase 1; structural genomi 100.0
3n2b_A441 Diaminopimelate decarboxylase; LYSA, lyase, struct 100.0
2nva_A372 Arginine decarboxylase, A207R protein; PLP, TIM ba 100.0
2plj_A419 Lysine/ornithine decarboxylase; type IV decarboxyl 100.0
3mt1_A365 Putative carboxynorspermidine decarboxylase prote; 100.0
1knw_A425 Diaminopimelate decarboxylase; pyridoxal-phosphate 100.0
3n29_A418 Carboxynorspermidine decarboxylase; lyase; HET: PL 100.0
2j66_A428 BTRK, decarboxylase; butirosin, AHBA biosynthesis, 100.0
2o0t_A467 Diaminopimelate decarboxylase; PLP binding enzyme, 100.0
2qgh_A425 Diaminopimelate decarboxylase; lyase; HET: PLP LYS 100.0
2yxx_A386 Diaminopimelate decarboxylase; TM1517, TIM beta/al 100.0
1twi_A434 Diaminopimelate decarboxylase; antibiotic resistan 100.0
2p3e_A420 Diaminopimelate decarboxylase; southeast collabora 100.0
3nzp_A619 Arginine decarboxylase; alpha-beta protein, struct 100.0
3nzq_A666 ADC, biosynthetic arginine decarboxylase; alpha-be 100.0
3n2o_A 648 ADC, biosynthetic arginine decarboxylase; lyase; H 100.0
2dy3_A361 Alanine racemase; alpha/beta barrel, isomerase; HE 100.0
1xfc_A384 Alanine racemase; alpha-beta barrel, beta-structur 100.0
2vd8_A391 Alanine racemase; pyridoxal 5'-phosphate, peptidog 100.0
1vfs_A386 Alanine racemase; TIM-barrel, greek-KEY motief, is 100.0
1bd0_A388 Alanine racemase; isomerase, pyridoxal phosphate, 100.0
3co8_A380 Alanine racemase; protein structure initiative II, 100.0
4ecl_A374 Serine racemase, vantg; antibiotic resistance, van 100.0
2rjg_A379 Alanine racemase; alpha/beta barrel, cell shape, c 100.0
1rcq_A357 Catabolic alanine racemase DADX; alpha-beta barrel 100.0
3kw3_A376 Alanine racemase; niaid, ssgcid, seattle structura 99.98
3e5p_A371 Alanine racemase; ALR, PLP, SCP, isomerase, pyrido 99.98
3mub_A367 Alanine racemase; alpha/beta barrel, extended beta 99.97
4a3q_A382 Alanine racemase 1; isomerase, PLP-dependent enzym 99.97
3hur_A395 Alanine racemase; structural genomics, isomerase, 99.96
3anu_A376 D-serine dehydratase; PLP-dependent fold-type III 99.95
3llx_A376 Predicted amino acid aldolase or racemase; structu 99.91
3gwq_A426 D-serine deaminase; structural genomics, joint cen 99.9
3cpg_A282 Uncharacterized protein; unknown protein, TIM barr 99.8
3sy1_A245 UPF0001 protein YGGS; engineered protein, structur 99.53
1ct5_A256 Protein (yeast hypothetical protein, selenoMet); T 99.49
3r79_A244 Uncharacterized protein; PSI-biology, structural g 99.39
1vhc_A224 Putative KHG/KDPG aldolase; structural genomics, u 81.81
3f4w_A211 Putative hexulose 6 phosphate synthase; humps, mal 81.35
1ydn_A295 Hydroxymethylglutaryl-COA lyase; TIM-barrel protei 81.18
1nvm_A345 HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered 80.29
2ftp_A302 Hydroxymethylglutaryl-COA lyase; structural genomi 80.04
>7odc_A Protein (ornithine decarboxylase); pyridoxal-5'-phosphate, PLP, group IV decarboxylase, polyami parasitical, chemotherapy target, putrescine; HET: PLP; 1.60A {Mus musculus} SCOP: b.49.2.3 c.1.6.1 PDB: 2on3_A 1d7k_A* Back     alignment and structure
Probab=100.00  E-value=6.1e-69  Score=540.05  Aligned_cols=369  Identities=37%  Similarity=0.630  Sum_probs=309.7

Q ss_pred             eEEEeecCCcHHHHHHHHHhhc--CCCCCccEEEEeHHHHHHHHHHHHHhCCCCceeeeeccCCcHHHHHHHHHcCCeEE
Q 037610           24 RVTTVVTKDELTEFMQSTILKR--QEFDEVPFYLMDLGVVVSLYNHMISNLPMIHPHYAVKCNPEPALLEALAALGSNFD  101 (405)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~--~~~~t~P~~v~d~~~l~~n~~~~~~~~~~~~i~yavKaN~~~~vl~~l~~~G~g~~  101 (405)
                      .++.++.+.+++++|++++.+.  .+.+| |+|+||+++|++|+++|++.+|+++++||+|||+++.|++.+.++|+|||
T Consensus        10 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~t-P~~v~dl~~l~~n~~~~~~~~~~~~i~yavKAn~~~~v~~~l~~~G~g~d   88 (424)
T 7odc_A           10 DCHILDEGFTAKDILDQKINEVSSSDDKD-AFYVADLGDILKKHLRWLKALPRVTPFYAVKCNDSRAIVSTLAAIGTGFD   88 (424)
T ss_dssp             EEEEECSSCCHHHHHHHHHC------CCC-CEEEEEHHHHHHHHHHHHHHCTTEEEEEEGGGCCCHHHHHHHHHHTCEEE
T ss_pred             cEEEecCCCCHHHHHHHHHhhcccCCCCC-cEEEeeHHHHHHHHHHHHHhCCCCeEEEEeccCCcHHHHHHHHHcCCcEE
Confidence            6788889999999999998765  24689 99999999999999999999999999999999999999999999999999


Q ss_pred             EcCHHHHHHHHhCCCCCCcEEEcCCCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHCCCCeEEEEEecCCCCCCCCCCC
Q 037610          102 CGSRSEIEAVLLLDVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKSPDDSGAKYPLD  181 (405)
Q Consensus       102 vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gv~~i~vds~~el~~i~~~~~~~~v~lRi~~~~~~~~~~~~~  181 (405)
                      |+|.+|++.++++|+++++|+|+||+|++++++.|+++|+..++|||++||++|.+.+++.+++|||+++... ......
T Consensus        89 vaS~~E~~~~~~~G~~~~~Ii~~g~~k~~~ei~~a~~~gv~~~~vds~~el~~l~~~~~~~~v~lRvn~~~~~-~~~~~~  167 (424)
T 7odc_A           89 CASKTEIQLVQGLGVPAERVIYANPCKQVSQIKYAASNGVQMMTFDSEIELMKVARAHPKAKLVLRIATDDSK-AVCRLS  167 (424)
T ss_dssp             ECSHHHHHHHHHTTCCGGGEEECCSSCCHHHHHHHHHTTCCEEEECSHHHHHHHHHHCTTCEEEEEBCC-----------
T ss_pred             ECCHHHHHHHHHcCCChhhEEECCCCCCHHHHHHHHHCCCCEEEeCCHHHHHHHHHhCCCCeEEEEECCCCCC-CCCCCC
Confidence            9999999999999999999999999999999999999999767999999999999999999999999987532 223345


Q ss_pred             CCCCCCCChhhHHHHHHHHHHcCCeEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhCCC-----------C------
Q 037610          182 SKYGAGHHPQEIMPLLKAAEASGLSVVGVSFHVGSEATNFAAFRGAIAAAKAVFDTAARTSN-----------N------  244 (405)
Q Consensus       182 srfGi~~~~~e~~~~~~~~~~~~l~l~Gih~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~G~-----------~------  244 (405)
                      +|||+  +.+++.++++.+++.++++.|||||+||++.+.+.|.++++++.++++.+++.|+           +      
T Consensus       168 skfG~--~~~~~~~~~~~~~~~~l~l~Glh~H~gsq~~d~~~~~~a~~~~~~~~~~~~~~G~~~~~ldiGGG~~~~~~~~  245 (424)
T 7odc_A          168 VKFGA--TLKTSRLLLERAKELNIDVIGVSFHVGSGCTDPDTFVQAVSDARCVFDMATEVGFSMHLLDIGGGFPGSEDTK  245 (424)
T ss_dssp             -CCCB--CHHHHHHHHHHHHHTTCEEEEEECCCCSSCCCTHHHHHHHHHHHHHHHHHHHHTCCCCEEECCCCCCCSSSSS
T ss_pred             CCCCC--CHHHHHHHHHHHHhCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCEEEeCCCcCCCCCCC
Confidence            99999  9999999999888889999999999999999999999999999888887765432           0      


Q ss_pred             -chhHH---HHHHHHHhCC-CCCcEEEECCchhhhccceeEEEEEEEEEEeC--------------CeeEEEEecCCCCC
Q 037610          245 -KMRKL---FKLIFRELLP-GSSLKVISEPGRFFAASAFTLYAQIIGKRVRG--------------ELREYWINDGKFGS  305 (405)
Q Consensus       245 -~~~~l---i~~~l~~~~~-~~~~~l~~EPGr~lv~~a~~l~t~V~~~k~~~--------------~~~~~~i~dg~~~~  305 (405)
                       +++.+   ++..++++|+ .++++|++|||||++++|++|+|+|+++|...              .++.|+++||+|++
T Consensus       246 ~~~~~~a~~i~~~~~~~~~~~~~~~ii~EPGR~lva~ag~lv~~V~~~k~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~  325 (424)
T 7odc_A          246 LKFEEITSVINPALDKYFPSDSGVRIIAEPGRYYVASAFTLAVNIIAKKTVWKEQPGSDDEDESNEQTFMYYVNDGVYGS  325 (424)
T ss_dssp             SCHHHHHHHHHHHHHHHSCGGGTCEEEECCSHHHHGGGEEEEEEEEEEEEEC-------------CCEEEEEESCCTTTT
T ss_pred             CCHHHHHHHHHHHHHHHhcccCCcEEEECCCHHhhhhcEEEEEEEEEEEEccccccccccccccCcceEEEEEeCCcCCC
Confidence             12222   5566777776 45799999999999999999999999999742              13568899999999


Q ss_pred             ChhhhhhccccccccCCCCCCCCccCCCCceeeEEEeccCcCCCCeeecCCCCCCCCCCCEEEEcCCCccccccCCCCCC
Q 037610          306 LAWVTCDEAIAKCTPLPFASSFTTSKGLTRTYNSTVFGPTCDAFDEVFTGHKLPELEVNDWLVFSEMGAYTTACGTNFNG  385 (405)
Q Consensus       306 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~G~~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~~~~~~fn~  385 (405)
                      +++.+|+.+++.|........      ....++++|+||+|+++|++.+++.||++++||+|+|.++|||+++|+++||+
T Consensus       326 ~~~~ly~~~~~~p~~~~~~~~------~~~~~~~~v~Gp~C~s~D~l~~~~~Lp~l~~GD~l~~~~~GAY~~s~ss~fN~  399 (424)
T 7odc_A          326 FNCILYDHAHVKALLQKRPKP------DEKYYSSSIWGPTCDGLDRIVERCNLPEMHVGDWMLFENMGAYTVAAASTFNG  399 (424)
T ss_dssp             THHHHHSCCCCCCEESSCCCT------TCCEEEEEEECSSSCTTCEEEEEEEEECCCTTCEEEECSCCSSSGGGCCCGGG
T ss_pred             hhhHhhccCccceeeecCCCC------CCCeeeEEEECCCCCCCCEecccccCCCCCCCCEEEECCCCCCchhhccCCCC
Confidence            999999887753322221111      23457899999999999999999999999999999999999999999999999


Q ss_pred             CCCCCceEEEEeCCccc
Q 037610          386 YSTVAIPTYVVRSNQTL  402 (405)
Q Consensus       386 ~~~p~~~~~~~~s~~~~  402 (405)
                      +++|+++.+.....|.+
T Consensus       400 ~~~p~~v~~~~~~~~~~  416 (424)
T 7odc_A          400 FQRPNIYYVMSRPMWQL  416 (424)
T ss_dssp             CCCCEEEEEEEHHHHHH
T ss_pred             CCCCeEEEEEcchHHHH
Confidence            99998654444455544
>2oo0_A ODC, ornithine decarboxylase; beta-alpha barrel, sheet, lyase; HET: PLP; 1.90A {Homo sapiens} Back     alignment and structure
>3btn_A Antizyme inhibitor 1; TIM-like A/B barrel domain and A sheet domain, structural genomics, israel structural proteomics center, ISPC; 2.05A {Mus musculus} Back     alignment and structure
>1f3t_A ODC, ornithine decarboxylase; beta-alpha-barrel, modified greek KEY beta-sheet, lyase; HET: PLP; 2.00A {Trypanosoma brucei} SCOP: b.49.2.3 c.1.6.1 PDB: 1qu4_A* 1szr_C* 2tod_A* 1njj_A* Back     alignment and structure
>3vab_A Diaminopimelate decarboxylase 1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: LLP; 2.10A {Brucella melitensis BV} Back     alignment and structure
>3n2b_A Diaminopimelate decarboxylase; LYSA, lyase, structural genom center for structural genomics of infectious diseases, CSGI; 1.80A {Vibrio cholerae} Back     alignment and structure
>2nva_A Arginine decarboxylase, A207R protein; PLP, TIM barrel, eukaryotic ODC- like, lyase; HET: PL2; 1.80A {Paramecium bursaria chlorella virus 1} PDB: 2nv9_A* Back     alignment and structure
>2plj_A Lysine/ornithine decarboxylase; type IV decarboxylase, beta/alpha barrel, beta barrel, lyase; HET: P3T; 1.70A {Vibrio vulnificus} PDB: 2plk_A* Back     alignment and structure
>3mt1_A Putative carboxynorspermidine decarboxylase prote; PSI2, MCSG, structural genomics; 2.50A {Sinorhizobium meliloti} Back     alignment and structure
>1knw_A Diaminopimelate decarboxylase; pyridoxal-phosphate, decarboxylation, lysin barrel, lyase; HET: PLP MES; 2.10A {Escherichia coli} SCOP: b.49.2.3 c.1.6.1 PDB: 1ko0_A* Back     alignment and structure
>3n29_A Carboxynorspermidine decarboxylase; lyase; HET: PLP; 1.90A {Campylobacter jejuni subsp} Back     alignment and structure
>2j66_A BTRK, decarboxylase; butirosin, AHBA biosynthesis, lyase; HET: PLP; 1.65A {Bacillus circulans} Back     alignment and structure
>2o0t_A Diaminopimelate decarboxylase; PLP binding enzyme, lysine biosynthesis, STRU genomics, TB structural genomics consortium, TBSGC; HET: LLP; 2.33A {Mycobacterium tuberculosis} PDB: 1hkv_A* 1hkw_A Back     alignment and structure
>2qgh_A Diaminopimelate decarboxylase; lyase; HET: PLP LYS; 2.30A {Helicobacter pylori} PDB: 3c5q_A* Back     alignment and structure
>2yxx_A Diaminopimelate decarboxylase; TM1517, TIM beta/alpha barrel fold, lyase, structural genomi NPPSFA; HET: PLP; 1.70A {Thermotoga maritima} Back     alignment and structure
>1twi_A Diaminopimelate decarboxylase; antibiotic resistance, lysine biosynthesis, structural genomics, NYSGXRC, PSI; HET: LYS PLP; 2.00A {Methanocaldococcus jannaschii} SCOP: b.49.2.3 c.1.6.1 PDB: 1tuf_A* Back     alignment and structure
>2p3e_A Diaminopimelate decarboxylase; southeast collaboratory for struct genomics, riken spring-8 center; 1.99A {Aquifex aeolicus} Back     alignment and structure
>3nzp_A Arginine decarboxylase; alpha-beta protein, structural genomics, PSI-biology, protei structure initiative; HET: PLP; 3.00A {Campylobacter jejuni subsp} Back     alignment and structure
>3nzq_A ADC, biosynthetic arginine decarboxylase; alpha-beta protein, structural genomics, PSI-biology, protei structure initiative; 3.10A {Escherichia coli} Back     alignment and structure
>3n2o_A ADC, biosynthetic arginine decarboxylase; lyase; HET: PLP; 2.30A {Vibrio vulnificus} Back     alignment and structure
>2dy3_A Alanine racemase; alpha/beta barrel, isomerase; HET: PLP; 2.10A {Corynebacterium glutamicum} Back     alignment and structure
>1xfc_A Alanine racemase; alpha-beta barrel, beta-structure for C-terminal domain, INT aldimine form, isomerase; HET: PLP; 1.90A {Mycobacterium tuberculosis} Back     alignment and structure
>2vd8_A Alanine racemase; pyridoxal 5'-phosphate, peptidoglycan synthesis, PLP, OPPF, L-alanine, isomerase, D- alanine, pyridoxal phosphate; HET: MLY LLP; 1.47A {Bacillus anthracis} PDB: 2vd9_A* 3ha1_A* Back     alignment and structure
>1vfs_A Alanine racemase; TIM-barrel, greek-KEY motief, isomerase; HET: KCX DCS; 1.90A {Streptomyces lavendulae} SCOP: b.49.2.2 c.1.6.1 PDB: 1vfh_A* 1vft_A* Back     alignment and structure
>1bd0_A Alanine racemase; isomerase, pyridoxal phosphate, alanine phosphonate; HET: IN5; 1.60A {Geobacillus stearothermophilus} SCOP: b.49.2.2 c.1.6.1 PDB: 1sft_A* 2sfp_A* 1l6g_A* 1niu_A* 1l6f_A* 1xql_A* 1xqk_A* 1epv_A* 1ftx_A* 3uw6_A Back     alignment and structure
>3co8_A Alanine racemase; protein structure initiative II, PSI-II, PLP, TIM barrel, structural genomics, NEW YORK SGX center for structural genomics; HET: PLP; 1.70A {Oenococcus oeni} Back     alignment and structure
>4ecl_A Serine racemase, vantg; antibiotic resistance, vancomycin resistance, center for STR genomics of infectious diseases (csgid); HET: MSE; 2.02A {Enterococcus faecalis} Back     alignment and structure
>2rjg_A Alanine racemase; alpha/beta barrel, cell shape, cell WALL biogenesis/degradat isomerase, peptidoglycan synthesis, pyridoxal phosphate; HET: KCX PLP; 2.40A {Escherichia coli} PDB: 2rjh_A* 3b8v_A* 3b8u_A* 3b8t_A* 3b8w_A* Back     alignment and structure
>1rcq_A Catabolic alanine racemase DADX; alpha-beta barrel, beta-structure for C-terminal domain, internal/external aldimine forms, isomerase; HET: KCX PLP DLY; 1.45A {Pseudomonas aeruginosa} SCOP: b.49.2.2 c.1.6.1 PDB: 2odo_A* Back     alignment and structure
>3kw3_A Alanine racemase; niaid, ssgcid, seattle structural genomics center for infect disease, iodide SOAK, LLP, CAT-scratch DI isomerase; HET: LLP; 2.04A {Bartonella henselae} Back     alignment and structure
>3e5p_A Alanine racemase; ALR, PLP, SCP, isomerase, pyridoxal phosph; HET: PLP EPE 2PE; 2.50A {Enterococcus faecalis} PDB: 3e6e_A* Back     alignment and structure
>4a3q_A Alanine racemase 1; isomerase, PLP-dependent enzymes; HET: PLP; 2.15A {Staphylococcus aureus} PDB: 3oo2_A Back     alignment and structure
>3hur_A Alanine racemase; structural genomics, isomerase, pyridoxal phosphate, PSI-2, protein structure initiative; 2.50A {Oenococcus oeni psu-1} Back     alignment and structure
>3anu_A D-serine dehydratase; PLP-dependent fold-type III enzyme, PL binding, zinc binding, lyase; HET: PLP; 1.90A {Gallus gallus} PDB: 3anv_A* 3awn_A* 3awo_A* Back     alignment and structure
>3llx_A Predicted amino acid aldolase or racemase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: LLP TRS; 1.50A {Idiomarina loihiensis} Back     alignment and structure
>3gwq_A D-serine deaminase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; HET: MSE; 2.00A {Burkholderia xenovorans LB400} Back     alignment and structure
>3cpg_A Uncharacterized protein; unknown protein, TIM barrel, monomer, structural genomics, PSI-2, protein structure initiative; 1.71A {Bifidobacterium adolescentis ATCC15703} Back     alignment and structure
>3sy1_A UPF0001 protein YGGS; engineered protein, structural genomics, PSI-biology, protei structure initiative; HET: MES; 1.47A {Escherichia coli} PDB: 1w8g_A* Back     alignment and structure
>1ct5_A Protein (yeast hypothetical protein, selenoMet); TIM barrel, pyridoxal-5'-phosphate, selenomethionine, structural genomics, PSI; HET: PLP; 2.00A {Saccharomyces cerevisiae} SCOP: c.1.6.2 PDB: 1b54_A* Back     alignment and structure
>3r79_A Uncharacterized protein; PSI-biology, structural genomics, NEW YORK structural genomi research consortium, TIM barrel; HET: PLP; 1.90A {Agrobacterium tumefaciens} Back     alignment and structure
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1 Back     alignment and structure
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0 Back     alignment and structure
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis} Back     alignment and structure
>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5 Back     alignment and structure
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 405
d7odca2240 c.1.6.1 (A:44-283) Eukaryotic ornithine decarboxyl 3e-29
d1f3ta1169 b.49.2.3 (A:14-43,A:284-422) Eukaryotic ornithine 2e-27
d1f3ta2240 c.1.6.1 (A:44-283) Eukaryotic ornithine decarboxyl 2e-25
d7odca1177 b.49.2.3 (A:2-43,A:284-418) Eukaryotic ornithine d 8e-21
d1hkva2265 c.1.6.1 (A:46-310) Diaminopimelate decarboxylase L 5e-16
d1knwa2247 c.1.6.1 (A:32-278) Diaminopimelate decarboxylase L 2e-15
d1twia2264 c.1.6.1 (A:50-313) Diaminopimelate decarboxylase L 1e-12
d1knwa1174 b.49.2.3 (A:2-31,A:279-422) Diaminopimelate decarb 1e-11
d1hkva1181 b.49.2.3 (A:2-45,A:311-447) Diaminopimelate decarb 4e-07
d1twia1170 b.49.2.3 (A:15-49,A:314-448) Diaminopimelate decar 7e-06
>d7odca2 c.1.6.1 (A:44-283) Eukaryotic ornithine decarboxylase {Mouse (Mus musculus) [TaxId: 10090]} Length = 240 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: PLP-binding barrel
family: Alanine racemase-like, N-terminal domain
domain: Eukaryotic ornithine decarboxylase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  112 bits (279), Expect = 3e-29
 Identities = 94/243 (38%), Positives = 132/243 (54%), Gaps = 25/243 (10%)

Query: 57  DLGVVVSLYNHMISNLPMIHPHYAVKCNPEPALLEALAALGSNFDCGSRSEIEAVLLLDV 116
           DLG ++  +   +  LP + P YAVKCN   A++  LAA+G+ FDC S++EI+ V  L V
Sbjct: 1   DLGDILKKHLRWLKALPRVTPFYAVKCNDSRAIVSTLAAIGTGFDCASKTEIQLVQGLGV 60

Query: 117 SPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKSPDDSGA 176
             +R+IYANPCK VS IKYAAS GV + T DS  EL K+   HPK+ L++RI   DDS A
Sbjct: 61  PAERVIYANPCKQVSQIKYAASNGVQMMTFDSEIELMKVARAHPKAKLVLRIA-TDDSKA 119

Query: 177 KYPLDSKYGAGHHPQEIMPLLKAAEASGLSVVGVSFHVGSEATNFAAFRGAIAAAKAVFD 236
              L  K+GA         LL+ A+   + V+GVSFHVGS  T+   F  A++ A+ VFD
Sbjct: 120 VCRLSVKFGATLK--TSRLLLERAKELNIDVIGVSFHVGSGCTDPDTFVQAVSDARCVFD 177

Query: 237 TAART---------------------SNNKMRKLFKLIFRELLPG-SSLKVISEPGRFFA 274
            A                           ++  +      +  P  S +++I+EPGR++ 
Sbjct: 178 MATEVGFSMHLLDIGGGFPGSEDTKLKFEEITSVINPALDKYFPSDSGVRIIAEPGRYYV 237

Query: 275 ASA 277
           ASA
Sbjct: 238 ASA 240
>d1f3ta1 b.49.2.3 (A:14-43,A:284-422) Eukaryotic ornithine decarboxylase (ODC) {Trypanosoma brucei [TaxId: 5691]} Length = 169 Back     information, alignment and structure
>d1f3ta2 c.1.6.1 (A:44-283) Eukaryotic ornithine decarboxylase {Trypanosoma brucei [TaxId: 5691]} Length = 240 Back     information, alignment and structure
>d7odca1 b.49.2.3 (A:2-43,A:284-418) Eukaryotic ornithine decarboxylase (ODC) {Mouse (Mus musculus) [TaxId: 10090]} Length = 177 Back     information, alignment and structure
>d1hkva2 c.1.6.1 (A:46-310) Diaminopimelate decarboxylase LysA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 265 Back     information, alignment and structure
>d1knwa2 c.1.6.1 (A:32-278) Diaminopimelate decarboxylase LysA {Escherichia coli [TaxId: 562]} Length = 247 Back     information, alignment and structure
>d1twia2 c.1.6.1 (A:50-313) Diaminopimelate decarboxylase LysA {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 264 Back     information, alignment and structure
>d1knwa1 b.49.2.3 (A:2-31,A:279-422) Diaminopimelate decarboxylase LysA {Escherichia coli [TaxId: 562]} Length = 174 Back     information, alignment and structure
>d1hkva1 b.49.2.3 (A:2-45,A:311-447) Diaminopimelate decarboxylase LysA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 181 Back     information, alignment and structure
>d1twia1 b.49.2.3 (A:15-49,A:314-448) Diaminopimelate decarboxylase LysA {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 170 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query405
d1f3ta2240 Eukaryotic ornithine decarboxylase {Trypanosoma br 100.0
d7odca2240 Eukaryotic ornithine decarboxylase {Mouse (Mus mus 100.0
d1hkva2265 Diaminopimelate decarboxylase LysA {Mycobacterium 100.0
d1twia2264 Diaminopimelate decarboxylase LysA {Archaeon Metha 100.0
d1knwa2247 Diaminopimelate decarboxylase LysA {Escherichia co 100.0
d1f3ta1169 Eukaryotic ornithine decarboxylase (ODC) {Trypanos 99.95
d7odca1177 Eukaryotic ornithine decarboxylase (ODC) {Mouse (M 99.94
d1hkva1181 Diaminopimelate decarboxylase LysA {Mycobacterium 99.91
d1twia1170 Diaminopimelate decarboxylase LysA {Archaeon Metha 99.89
d1knwa1174 Diaminopimelate decarboxylase LysA {Escherichia co 99.87
d1vfsa2237 Alanine racemase {Streptomyces lavendulae [TaxId: 99.85
d1bd0a2233 Alanine racemase {Bacillus stearothermophilus [Tax 99.79
d1rcqa2226 Alanine racemase {Pseudomonas aeruginosa [TaxId: 2 99.78
d1rcqa1131 Alanine racemase {Pseudomonas aeruginosa [TaxId: 2 98.52
d1vfsa1145 Alanine racemase {Streptomyces lavendulae [TaxId: 98.44
d1bd0a1148 Alanine racemase {Bacillus stearothermophilus [Tax 98.23
d1ct5a_244 "Hypothetical" protein ybl036c {Baker's yeast (Sac 96.46
>d1f3ta2 c.1.6.1 (A:44-283) Eukaryotic ornithine decarboxylase {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: PLP-binding barrel
family: Alanine racemase-like, N-terminal domain
domain: Eukaryotic ornithine decarboxylase
species: Trypanosoma brucei [TaxId: 5691]

Probab=100.00  E-value=4.8e-42  Score=317.38  Aligned_cols=217  Identities=41%  Similarity=0.705  Sum_probs=188.7

Q ss_pred             eHHHHHHHHHHHHHhCCCCceeeeeccCCcHHHHHHHHHcCCeEEEcCHHHHHHHHhCCCCCCcEEEcCCCCCHHHHHHH
Q 037610           57 DLGVVVSLYNHMISNLPMIHPHYAVKCNPEPALLEALAALGSNFDCGSRSEIEAVLLLDVSPDRIIYANPCKPVSHIKYA  136 (405)
Q Consensus        57 d~~~l~~n~~~~~~~~~~~~i~yavKaN~~~~vl~~l~~~G~g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a  136 (405)
                      |++.|.+++++|++.||+++++||+|||+++.|++.+.++|+|+||+|.+|++.|+++|+++++|+|+||+|+.++++.|
T Consensus         1 dl~~i~~~~~~~~~~~p~v~~~YA~KaN~~~~il~~l~~~g~g~dv~S~~El~~al~~G~~~~~Iif~g~~k~~~ei~~a   80 (240)
T d1f3ta2           1 DLGDIVRKHETWKKCLPRVTPFYAVKCNDDWRVLGTLAALGTGFDCASNTEIQRVRGIGVPPEKIIYANPCKQISHIRYA   80 (240)
T ss_dssp             EHHHHHHHHHHHHHHCTTEEEEEEGGGCCCHHHHHHHHHTTCEEEECSHHHHHHHHHTTCCGGGEEECCSSCCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCCEEEEEeccCCCHHHHHHHHHcCCCeEeccchhHHHHHHcCCCccceeeccccchhHHHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCcEEEecCHHHHHHHHhHCCCCeEEEEEecCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHcCCeEEEEEEecCC
Q 037610          137 ASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLKAAEASGLSVVGVSFHVGS  216 (405)
Q Consensus       137 ~~~gv~~i~vds~~el~~i~~~~~~~~v~lRi~~~~~~~~~~~~~srfGi~~~~~e~~~~~~~~~~~~l~l~Gih~H~gs  216 (405)
                      +++|+.++++||++|++++.+.++..++.+|+++.... ......+|||+  +.+++.++++.++..++++.|||+|+||
T Consensus        81 ~~~g~~~~~~ds~~el~~i~~~~~~~~~~~ri~~~~~~-~~~~~~~kFGi--~~~~~~~~~~~~~~~~~~l~GlH~H~GS  157 (240)
T d1f3ta2          81 RDSGVDVMTFDCVDELEKVAKTHPKAKMVLRISTDDSL-ARCRLSVKFGA--KVEDCRFILEQAKKLNIDVTGVSFHVGS  157 (240)
T ss_dssp             HHTTCCEEEECSHHHHHHHHHHCTTCEEEEEBCC-----------CCSCB--CHHHHHHHHHHHHHTTCEEEEEECCCCS
T ss_pred             HHhcccceeeeehhhhhhhhhhcccccccccccccccc-ccccccccchh--hHHHHHHHHHHHhccccceeeeeeehhh
Confidence            99999879999999999999999999999999987543 12234589999  9999999999988889999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCchhH-------------------H---HHHHHHHhCC-CCCcEEEECCchhh
Q 037610          217 EATNFAAFRGAIAAAKAVFDTAARTSNNKMRK-------------------L---FKLIFRELLP-GSSLKVISEPGRFF  273 (405)
Q Consensus       217 ~~~~~~~~~~~i~~~~~~~~~~~~~G~~~~~~-------------------l---i~~~l~~~~~-~~~~~l~~EPGr~l  273 (405)
                      +..+.+.|.+.++.+..+++.++..|+ ++++                   +   +...++++++ +.+++|++|||||+
T Consensus       158 ~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~~ldiGGG~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~l~~EPGR~l  236 (240)
T d1f3ta2         158 GSTDASTFAQAISDSRFVFDMGTELGF-NMHILDIGGGFPGTRDAPLKFEEIAGVINNALEKHFPPDLKLTIVAEPGRYY  236 (240)
T ss_dssp             CCSCTHHHHHHHHHHHHHHHHHHHTTC-CCCEEECCCCCCSSTTSSSCHHHHHHHHHHHHHHHSCCCTTCEEEECCSHHH
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHHcCC-CceeeeccCccCCCCCCCCCHHHHHHHHHHHHHHhcCcCCCCEEEEecCHHH
Confidence            999999999988888888887765432 1111                   1   4556777776 45789999999999


Q ss_pred             hccc
Q 037610          274 AASA  277 (405)
Q Consensus       274 v~~a  277 (405)
                      +++|
T Consensus       237 va~A  240 (240)
T d1f3ta2         237 VASA  240 (240)
T ss_dssp             HGGG
T ss_pred             hcCC
Confidence            9876
>d7odca2 c.1.6.1 (A:44-283) Eukaryotic ornithine decarboxylase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1hkva2 c.1.6.1 (A:46-310) Diaminopimelate decarboxylase LysA {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1twia2 c.1.6.1 (A:50-313) Diaminopimelate decarboxylase LysA {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1knwa2 c.1.6.1 (A:32-278) Diaminopimelate decarboxylase LysA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1f3ta1 b.49.2.3 (A:14-43,A:284-422) Eukaryotic ornithine decarboxylase (ODC) {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d7odca1 b.49.2.3 (A:2-43,A:284-418) Eukaryotic ornithine decarboxylase (ODC) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1hkva1 b.49.2.3 (A:2-45,A:311-447) Diaminopimelate decarboxylase LysA {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1twia1 b.49.2.3 (A:15-49,A:314-448) Diaminopimelate decarboxylase LysA {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1knwa1 b.49.2.3 (A:2-31,A:279-422) Diaminopimelate decarboxylase LysA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vfsa2 c.1.6.1 (A:13-249) Alanine racemase {Streptomyces lavendulae [TaxId: 1914]} Back     information, alignment and structure
>d1bd0a2 c.1.6.1 (A:12-244) Alanine racemase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1rcqa2 c.1.6.1 (A:8-233) Alanine racemase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1rcqa1 b.49.2.2 (A:1-7,A:234-357) Alanine racemase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1vfsa1 b.49.2.2 (A:4-12,A:250-385) Alanine racemase {Streptomyces lavendulae [TaxId: 1914]} Back     information, alignment and structure
>d1bd0a1 b.49.2.2 (A:2-11,A:245-382) Alanine racemase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1ct5a_ c.1.6.2 (A:) "Hypothetical" protein ybl036c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure