Citrus Sinensis ID: 037618


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370----
MRKLCPNIEKEDGLETVLEVPIPEEMFTSMGSNVQLRWQNLSTWMKAQTSDKWSQPVIAGRINELRFLLYLVGSPLIPLQVQLGHSVHKPVKDCSIQASTAKYIVQQYIAATGGQAALNAVHSMCVTGQMKITASEFHQGDIEKSVNVKSNEETGGFVLWQKDPDLWFLELVVSGCKVICGSNGKLTWRHSSNHQGPISKGPPRPLRRFLQGLDPRSTANLFLDASCIGEKVINNEDCFILKLETSPAIREAQSGPNYEIIHHTIWGYFSQRSGLLIQFEDSRLLTMKTKDGNDVFWETSTESVMHDYRYVDGINIAHGGRTRVTVFRYGEQSANHKRDMEEKWKIEDVDLNIWGLTKDHFMPPAGVRKQTENC
cccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccEEcccHHHHHHHHHHHcccHHHHHHHcccEEccEEEEEEEEEEccccccccccccccEEEEEEEEEcccccEEEEEEEccEEEEEcccccEEEEcccccccccccccccHHHHHHHccccccHHccccccEEEEEEEEcccccEEEEEEccHHHHHHcccccEEEEEEEEEEEEcccccEEEEEcccEEEEEEccccccEEEccccccccccccccccEEEEcccccEEEEEEEccccccccccEEEEEEEEEEEEccccccccccccccccccccccc
cccccccccHHcccccEccccccHHHcccccccccccHHHHHHHHHHHHcccccccccccccHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcEEEEEEEEccccccEEEcccccccccccEEEEEccccEEEEEEEEEcEEEEEccccEEEEEEccccccccccccccHHHHHHccccHHHHHHHHHccEEEcEEEEccccEEEEEEEccHHHHHHccccccEEEEEEEEEEEcccccEEEEEEcccEEEEEccccccEEEEEEcHccHHccccccEEEEEccccEEEEEEEccccccccccEEEEEEEEEEEEcccccccccccccHHHHHcccccc
mrklcpniekedgletvlevpipeemftsmgsNVQLRWQNLSTWMKaqtsdkwsqpviaGRINELRFLLYLvgspliplqvqlghsvhkpvkdcsiQASTAKYIVQQYIAATGGQAALNAVHSMCVTGQMkitasefhqgdieksvnvksneetggfvlwqkdpdlWFLELVVSGCKvicgsngkltwrhssnhqgpiskgpprplrrflqgldprstanLFLDascigekvinnedcfilkletspaireaqsgpnyeiIHHTIWGyfsqrsglliqfedsrlltmktkdgndvfWETStesvmhdyryvdginiahggrtrVTVFRygeqsanhkrdmeekwkiedvdlniwgltkdhfmppagvrkqtenc
mrklcpniekedgletVLEVPIPEEMFTSMGSNVQLRWQNLSTWMKAQTSDKWSQPVIAGRINELRFLLYLVGSPLIPLQVQLGHSVHKPVKDCSIQASTAKYIVQQYIAATGGQAALNAVHSMCVTGQMKITASEFHQGDIEKSVNVKSNEETGGFVLWQKDPDLWFLELVVSGCKVICGSNGKltwrhssnhqgpiskgpprPLRRFLQGLDPRSTANLFLDASCIGEKVINNEDCFILKLETSPAIREAQSGPNYEIIHHTIWGYFSQRSGLLIQFEDSRLLtmktkdgndvFWETSTESVMHDYRYVDGiniahggrtrVTVFRygeqsanhkrdmeekwkIEDVDLNIWGLTkdhfmppagvrkqtenc
MRKLCPNIEKEDGLETVLEVPIPEEMFTSMGSNVQLRWQNLSTWMKAQTSDKWSQPVIAGRINELRFLLYLVGSPLIPLQVQLGHSVHKPVKDCSIQASTAKYIVQQYIAATGGQAALNAVHSMCVTGQMKITASEFHQGDIEKSVNVKSNEETGGFVLWQKDPDLWFLELVVSGCKVICGSNGKLTWRHSSNHQGPISKGPPRPLRRFLQGLDPRSTANLFLDASCIGEKVINNEDCFILKLETSPAIREAQSGPNYEIIHHTIWGYFSQRSGLLIQFEDSRLLTMKTKDGNDVFWETSTESVMHDYRYVDGINIAHGGRTRVTVFRYGEQSANHKRDMEEKWKIEDVDLNIWGLTKDHFMPPAGVRKQTENC
***************TVLEVPIPEEMFTSMGSNVQLRWQNLSTWMKAQTSDKWSQPVIAGRINELRFLLYLVGSPLIPLQVQLGHSVHKPVKDCSIQASTAKYIVQQYIAATGGQAALNAVHSMCVTGQMKITASEFHQGDIEKSVNVKSNEETGGFVLWQKDPDLWFLELVVSGCKVICGSNGKLTWR********************LQGLDPRSTANLFLDASCIGEKVINNEDCFILKLETSPAIREAQSGPNYEIIHHTIWGYFSQRSGLLIQFEDSRLLTMKTKDGNDVFWETSTESVMHDYRYVDGINIAHGGRTRVTVFRYGEQ********EEKWKIEDVDLNIWGLTKDHF*************
*RKLCPNIEKEDGLETVLEVPI*****************************************ELRFLLYLVGSPLIPLQVQLG*************ASTAKYIVQQYIAATGGQAALNAVHSMCVTGQMKITA********************GGFVLWQKDPDLWFLELVVSGCKVICGSNGKLTWR****************LRRFLQGLDPRSTANLFLDASCIGEKVINNEDCFILKLETSP*********NYEIIHHTIWGYFSQRSGLLIQFEDSRLLTMKTKDGNDVFWETSTESVMHDYRYVDGINIAHGGRTRVTVFRYGEQSANHKRDMEEKWKIEDVDLNIWGLTKDHFMPPAGV*******
MRKLCPNIEKEDGLETVLEVPIPEEMFTSMGSNVQLRWQNLSTWMKAQTSDKWSQPVIAGRINELRFLLYLVGSPLIPLQVQLGHSVHKPVKDCSIQASTAKYIVQQYIAATGGQAALNAVHSMCVTGQMKITASEFHQGDIEKSVNVKSNEETGGFVLWQKDPDLWFLELVVSGCKVICGSNGKLTWRHS*********GPPRPLRRFLQGLDPRSTANLFLDASCIGEKVINNEDCFILKLETSPAIREAQSGPNYEIIHHTIWGYFSQRSGLLIQFEDSRLLTMKTKDGNDVFWETSTESVMHDYRYVDGINIAHGGRTRVTVFRYGEQSANHKRDMEEKWKIEDVDLNIWGLTKDHFMPPAG********
**KLCPNIEKEDGLETVLEVPIPEEMFT*****VQLRWQNLSTWM*AQTS*****PVIAGRINELRFLLYLVGSPLIPLQVQLGHSVHKPVKDCSIQASTAKYIVQQYIAATGGQAALNAVHSMCVTGQMKITASEFHQGDIEKSVNVKSNEETGGFVLWQKDPDLWFLELVVSGCKVICGSNGKLTWRHSSNHQGPISKGPPRPLRRFLQGLDPRSTANLFLDASCIGEKVINNEDCFILKLETSPAIREAQSGPNYEIIHHTIWGYFSQRSGLLIQFEDSRLLTMKTKDGNDVFWETSTESVMHDYRYVDGINIAHGGRTRVTVFRYGEQSANHKRDMEEKWKIEDVDLNIWGLTKDHFMPPAGVRK*****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MRKLCPNIEKEDGLETVLEVPIPEEMFTSMGSNVQLRWQNLSTWMKAQTSDKWSQPVIAGRINELRFLLYLVGSPLIPLQVQLGHSVHKPVKDCSIQASTAKYIVQQYIAATGGQAALNAVHSMCVTGQMKITASEFHQGDIEKSVNVKSNEETGGFVLWQKDPDLWFLELVVSGCKVICGSNGKLTWRHSSNHQGPISKGPPRPLRRFLQGLDPRSTANLFLDASCIGEKVINNEDCFILKLETSPAIREAQSGPNYEIIHHTIWGYFSQRSGLLIQFEDSRLLTMKTKDGNDVFWETSTESVMHDYRYVDGINIAHGGRTRVTVFRYGEQSANHKRDMEEKWKIEDVDLNIWGLTKDHFMPPAGVRKQTENC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query374
224094737367 predicted protein [Populus trichocarpa] 0.975 0.994 0.828 0.0
240256491370 uncharacterized protein [Arabidopsis tha 0.981 0.991 0.834 0.0
357483365378 hypothetical protein MTR_5g019880 [Medic 0.978 0.968 0.773 1e-176
338762837371 hypothetical protein 111018.11 [Coffea c 0.983 0.991 0.733 1e-169
225430798 544 PREDICTED: uncharacterized protein LOC10 0.991 0.681 0.734 1e-167
297735179363 unnamed protein product [Vitis vinifera] 0.967 0.997 0.75 1e-166
147820639363 hypothetical protein VITISV_016191 [Viti 0.967 0.997 0.75 1e-166
156070791373 unknown [Solanum bulbocastanum] 0.983 0.986 0.735 1e-165
9858773373 BAC19.5 [Solanum lycopersicum] 0.983 0.986 0.733 1e-165
156070769373 unknown [Capsicum frutescens] 0.970 0.973 0.732 1e-163
>gi|224094737|ref|XP_002310214.1| predicted protein [Populus trichocarpa] gi|222853117|gb|EEE90664.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  665 bits (1716), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 304/367 (82%), Positives = 345/367 (94%), Gaps = 2/367 (0%)

Query: 1   MRKLCPNIEKEDGLETVLEVPIPEEMFTSMGSNVQLRWQNLSTWMKAQTSDKWSQPVIAG 60
           MRKLCPNI++EDGLETVLE+PIPEEM+T+MGSN +LRWQN+ TWM+AQTSDK SQPVIA 
Sbjct: 1   MRKLCPNIDREDGLETVLEIPIPEEMYTNMGSNAELRWQNMLTWMRAQTSDKLSQPVIAA 60

Query: 61  RINELRFLLYLVGSPLIPLQVQLGHSVHKPVKDCSIQASTAKYIVQQYIAATGGQAALNA 120
           RINELRFLLY+VGSPLIPLQVQ+GHSVHKPVKDCSIQASTAKYIVQQYIAATGGQAALNA
Sbjct: 61  RINELRFLLYMVGSPLIPLQVQVGHSVHKPVKDCSIQASTAKYIVQQYIAATGGQAALNA 120

Query: 121 VHSMCVTGQMKITASEFHQGDIEKSVNVKSNEETGGFVLWQKDPDLWFLELVVSGCKVIC 180
           VHSMCVTG++KI ASEFH+G  E+++NVK +EETGGFVLWQKDPDLW LEL+VSGCK+IC
Sbjct: 121 VHSMCVTGEVKIKASEFHEG--EQTINVKGSEETGGFVLWQKDPDLWMLELLVSGCKMIC 178

Query: 181 GSNGKLTWRHSSNHQGPISKGPPRPLRRFLQGLDPRSTANLFLDASCIGEKVINNEDCFI 240
           GSNGK++WRHSSN + PISKGPPRPLRRFLQGLDPRSTANLF+DA+CIGEK+I +EDCFI
Sbjct: 179 GSNGKISWRHSSNQRKPISKGPPRPLRRFLQGLDPRSTANLFIDATCIGEKLIKDEDCFI 238

Query: 241 LKLETSPAIREAQSGPNYEIIHHTIWGYFSQRSGLLIQFEDSRLLTMKTKDGNDVFWETS 300
           LKLETSPAIREAQSGPNYEIIHHT+WGYFSQRSGLLIQFEDSRL+ ++TKDG D+FWETS
Sbjct: 239 LKLETSPAIREAQSGPNYEIIHHTMWGYFSQRSGLLIQFEDSRLIGLRTKDGEDIFWETS 298

Query: 301 TESVMHDYRYVDGINIAHGGRTRVTVFRYGEQSANHKRDMEEKWKIEDVDLNIWGLTKDH 360
            ES+M DYRYVDG+NIAH G+TRVTVFRYGEQSANHKR+MEE WKI++VD NIWGLT + 
Sbjct: 299 AESIMDDYRYVDGVNIAHSGQTRVTVFRYGEQSANHKREMEEHWKIDEVDFNIWGLTTEQ 358

Query: 361 FMPPAGV 367
           F+PP+ +
Sbjct: 359 FLPPSDL 365




Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240256491|ref|NP_201475.4| uncharacterized protein [Arabidopsis thaliana] gi|332010875|gb|AED98258.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|357483365|ref|XP_003611969.1| hypothetical protein MTR_5g019880 [Medicago truncatula] gi|358344395|ref|XP_003636275.1| hypothetical protein MTR_036s0059 [Medicago truncatula] gi|355502210|gb|AES83413.1| hypothetical protein MTR_036s0059 [Medicago truncatula] gi|355513304|gb|AES94927.1| hypothetical protein MTR_5g019880 [Medicago truncatula] Back     alignment and taxonomy information
>gi|338762837|gb|AEI98624.1| hypothetical protein 111018.11 [Coffea canephora] Back     alignment and taxonomy information
>gi|225430798|ref|XP_002271040.1| PREDICTED: uncharacterized protein LOC100256475 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297735179|emb|CBI17541.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147820639|emb|CAN74294.1| hypothetical protein VITISV_016191 [Vitis vinifera] Back     alignment and taxonomy information
>gi|156070791|gb|ABU45203.1| unknown [Solanum bulbocastanum] Back     alignment and taxonomy information
>gi|9858773|gb|AAG01120.1|AF273333_5 BAC19.5 [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|156070769|gb|ABU45183.1| unknown [Capsicum frutescens] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query374
TAIR|locus:2173634370 AT5G66740 "AT5G66740" [Arabido 0.981 0.991 0.834 6.9e-173
TAIR|locus:2025207395 AT1G75160 "AT1G75160" [Arabido 0.812 0.769 0.572 2.1e-111
TAIR|locus:2166414439 AT5G05840 "AT5G05840" [Arabido 0.844 0.719 0.542 3.5e-91
TAIR|locus:2007268494 AT1G49840 "AT1G49840" [Arabido 0.975 0.738 0.457 2.2e-80
TAIR|locus:2101510485 AT3G19540 "AT3G19540" [Arabido 0.975 0.752 0.458 9.7e-80
TAIR|locus:2199191433 AT1G27690 "AT1G27690" [Arabido 0.954 0.824 0.441 4.5e-75
TAIR|locus:2078946438 AT3G55720 "AT3G55720" [Arabido 0.772 0.659 0.467 3e-69
TAIR|locus:2206425417 AT1G79420 "AT1G79420" [Arabido 0.823 0.738 0.421 4.8e-62
TAIR|locus:2144128368 AT5G06610 "AT5G06610" [Arabido 0.895 0.910 0.377 7e-54
TAIR|locus:2173634 AT5G66740 "AT5G66740" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1680 (596.4 bits), Expect = 6.9e-173, P = 6.9e-173
 Identities = 307/368 (83%), Positives = 338/368 (91%)

Query:     1 MRKLCPNIEKEDGLETVLEVPIPEEMFTSMGSNVQLRWQNLSTWMKAQTSDKWSQPVIAG 60
             MRKLCPNI+K+DGLETVLEVPIPEEMF+ MG+NV LRWQN+ TWMKAQTSDKWSQP+IA 
Sbjct:     1 MRKLCPNIDKDDGLETVLEVPIPEEMFSGMGNNVALRWQNMMTWMKAQTSDKWSQPLIAA 60

Query:    61 RINELRFLLYLVGSPLIPLQVQLGHSVHKPVKDCSIQASTAKYIVQQYIAATGGQAALNA 120
             RINELRFLLYLVGSPLIPLQVQ+GHSVHKPVKDCSIQASTAKYIVQQYIAATGG  ALNA
Sbjct:    61 RINELRFLLYLVGSPLIPLQVQVGHSVHKPVKDCSIQASTAKYIVQQYIAATGGPQALNA 120

Query:   121 VHSMCVTGQMKITASEFHQGDIEKSVNVKSNEETGGFVLWQKDPDLWFLELVVSGCKVIC 180
             V+SMCVTGQ+K+TASEFHQGD +  VN+KSN+E GGFVLWQKDPDLW LELVVSGCKVIC
Sbjct:   121 VNSMCVTGQVKMTASEFHQGD-DSGVNLKSNDEMGGFVLWQKDPDLWCLELVVSGCKVIC 179

Query:   181 GSNGKLTWRHSSNHQGPISKGPPRPLRRFLQGLDPRSTANLFLDASCIGEKVINNEDCFI 240
             GSNG+L+WRHSSN Q P S G PRPLRRFLQGLDPRSTANLFLDA+CIGEK+IN EDCFI
Sbjct:   180 GSNGRLSWRHSSNQQTPASTGTPRPLRRFLQGLDPRSTANLFLDATCIGEKIINGEDCFI 239

Query:   241 LKLETSPAIREAQSGPNYEIIHHTIWGYFSQRSGLLIQFEDSRLLTMKTKDGNDVFWETS 300
             LKLETSPA+REAQSGPN+EIIHHTIWGYFSQRSGLLIQFEDSRLL M+TK+  DVFWETS
Sbjct:   240 LKLETSPAVREAQSGPNFEIIHHTIWGYFSQRSGLLIQFEDSRLLRMRTKEDEDVFWETS 299

Query:   301 TESVMHDYRYVDGINIAHGGRTRVTVFRYGEQSANHKRDMEEKWKIEDVDLNIWGLTKDH 360
              ESVM DYRYVD +NIAHGG+T VTVFRYGE SANH+R M EKW+IE+VD N+WGL+ DH
Sbjct:   300 AESVMDDYRYVDNVNIAHGGKTSVTVFRYGEASANHRRQMTEKWRIEEVDFNVWGLSVDH 359

Query:   361 FMPPAGVR 368
             F+PPA ++
Sbjct:   360 FLPPANLQ 367




GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0009827 "plant-type cell wall modification" evidence=RCA
GO:0009860 "pollen tube growth" evidence=RCA
TAIR|locus:2025207 AT1G75160 "AT1G75160" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2166414 AT5G05840 "AT5G05840" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2007268 AT1G49840 "AT1G49840" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2101510 AT3G19540 "AT3G19540" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2199191 AT1G27690 "AT1G27690" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2078946 AT3G55720 "AT3G55720" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2206425 AT1G79420 "AT1G79420" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2144128 AT5G06610 "AT5G06610" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
fgenesh4_pg.C_LG_VII001052
hypothetical protein (367 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query374
pfam04788243 pfam04788, DUF620, Protein of unknown function (DU 1e-134
>gnl|CDD|191093 pfam04788, DUF620, Protein of unknown function (DUF620) Back     alignment and domain information
 Score =  381 bits (981), Expect = e-134
 Identities = 127/243 (52%), Positives = 171/243 (70%), Gaps = 2/243 (0%)

Query: 124 MCVTGQMKITASEFHQGDIE-KSVNVKSNEETGGFVLWQKDPDLWFLELVVSGCKVICGS 182
           M   G++K+ ASEF  G+ +    N   + E+GGFVLWQ  PD+W++ELVV G KV  GS
Sbjct: 1   MYAMGKVKMIASEFEIGNGKSVRRNSGGSGESGGFVLWQMKPDMWYVELVVGGSKVSAGS 60

Query: 183 NGKLTWRHSSNHQGPISKGPPRPLRRFLQGLDPRSTANLFLDASCIGEKVINNEDCFILK 242
           +GK+ WRH+       +KGP RPLRR LQGLDP++TA+LF +A C+GEK ++ EDCF+LK
Sbjct: 61  DGKVVWRHTPWLGAHAAKGPVRPLRRALQGLDPKTTASLFANAQCVGEKRVDGEDCFVLK 120

Query: 243 LETSPAIREAQSGPNYEIIHHTIWGYFSQRSGLLIQFEDSRLLTMKTKDGNDVFWETSTE 302
           L+  PA   A+S    E+I HT++GYFSQRSGLL++ EDS L  ++T   + V+WET+ E
Sbjct: 121 LDADPAALSARSDGPAEVIRHTLFGYFSQRSGLLVRLEDSHLTRIQTPGADAVYWETTIE 180

Query: 303 SVMHDYRYVDGINIAHGGRTRVTVFRYGEQSANHKRD-MEEKWKIEDVDLNIWGLTKDHF 361
           S + DYR VDG+ IAH GR+ VT+FR+GE S +H R  MEE W I+DV  N+ GL+ D F
Sbjct: 181 SSLGDYRAVDGVMIAHSGRSVVTLFRFGEDSGSHSRTRMEEAWTIDDVAFNVPGLSPDSF 240

Query: 362 MPP 364
           +PP
Sbjct: 241 IPP 243


Family of uncharacterized proteins. Length = 243

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 374
PF04788245 DUF620: Protein of unknown function (DUF620); Inte 100.0
>PF04788 DUF620: Protein of unknown function (DUF620); InterPro: IPR006873 This is a family of uncharacterised proteins Back     alignment and domain information
Probab=100.00  E-value=3.3e-139  Score=969.99  Aligned_cols=241  Identities=59%  Similarity=1.067  Sum_probs=233.1

Q ss_pred             ceeccceeeEeeeecccCcccc-ccccCCceeccEEEEecCCCceEEEEEeeCeEeeeccCCceeeeccCCCCCCCCCCC
Q 037618          124 MCVTGQMKITASEFHQGDIEKS-VNVKSNEETGGFVLWQKDPDLWFLELVVSGCKVICGSNGKLTWRHSSNHQGPISKGP  202 (374)
Q Consensus       124 myA~GkVrM~~se~~~g~~~~~-v~~~~~~e~GgFVlWQ~~Pd~W~~ELvV~G~KV~AGsdGkvaWR~Tpw~g~HaakGp  202 (374)
                      |||||||||+++||++++.... ...++.+|+||||||||+|||||+||||||+||+||||||||||||||||+||||||
T Consensus         1 mya~GkVrM~~se~~~~~~~~~~~~~~~~~e~GgFVlWQ~~Pd~W~~ELvVgG~KV~AGsdGkvaWR~Tpw~g~HAakGp   80 (245)
T PF04788_consen    1 MYAMGKVRMAASEFEGGSGSVTKVGPTGGGEKGGFVLWQMNPDMWYLELVVGGCKVSAGSDGKVAWRHTPWQGSHAAKGP   80 (245)
T ss_pred             CceeeeEEEEEEeeccCCccccccccCcccccccEEEEEeCCCeEEEEEEecceEEeeccCCeeeeecCccccchhhcCC
Confidence            8999999999999998742111 235789999999999999999999999999999999999999999999999999999


Q ss_pred             CchhhhhhccCCccchhhccccceeeeeeeecCcceeEEEeeCChhhhhhcCCCCeeEEEeeeeccccccccceEEeecc
Q 037618          203 PRPLRRFLQGLDPRSTANLFLDASCIGEKVINNEDCFILKLETSPAIREAQSGPNYEIIHHTIWGYFSQRSGLLIQFEDS  282 (374)
Q Consensus       203 ~RPLRR~lQGLDPr~ta~lF~~A~ciGEk~i~gedCFiLkl~a~~~~l~arS~~~~EiirH~~~GYFSQrtGLLv~lEDs  282 (374)
                      ||||||||||||||+|||||++|+|||||+|||||||||||+||+++|++||++++|||||++|||||||||||||||||
T Consensus        81 ~RPLRR~lQGLDPr~ta~lF~~A~cvGEk~i~gedCFvLkl~ad~~~l~ars~~~~EiirH~~~GYFSQrtGLLv~lEDS  160 (245)
T PF04788_consen   81 PRPLRRFLQGLDPRSTANLFSNAVCVGEKRINGEDCFVLKLEADPSALKARSSGNAEIIRHTLWGYFSQRTGLLVQLEDS  160 (245)
T ss_pred             CchHHHHHhhcChhhHHHhhhhceEeeeeccCCcccEEEEeeCCHHHHhhhcCCCcEEEEEeeecccccccceeeeeecc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeeeec--CCCCceEEeecccccccccccccceeeecCCcceEEEEEecccccCccc-cceeeeeeeeeeccCCCCCCc
Q 037618          283 RLLTMKT--KDGNDVFWETSTESVMHDYRYVDGINIAHGGRTRVTVFRYGEQSANHKR-DMEEKWKIEDVDLNIWGLTKD  359 (374)
Q Consensus       283 ~Ltri~~--~~~~~vyWETt~eS~i~DYR~VdGi~IAH~G~t~vtl~RfGe~~~~h~r-rmEE~WtIeeV~FNV~GLS~D  359 (374)
                      ||||||+  +++++|||||||||+|+|||+||||||||+|||+||||||||++++|+| ||||+|+||||||||||||||
T Consensus       161 ~L~ri~~~~~~~~~vyWETt~es~i~DYR~Vdgv~IAH~G~t~vtl~RfGe~~~~h~rTrmEE~W~Ieev~FNV~GLS~D  240 (245)
T PF04788_consen  161 HLTRIQSGRPGGDAVYWETTMESSIEDYRAVDGVNIAHSGRTVVTLFRFGENSMSHSRTRMEETWTIEEVDFNVPGLSMD  240 (245)
T ss_pred             eeEEeeecCCCCCceEEEEeecccccccccccceeeeccCCceEEEEecccccccCceeeEeeeeEeeeEEeccCCcchh
Confidence            9999999  7899999999999999999999999999999999999999999999987 999999999999999999999


Q ss_pred             ccCCC
Q 037618          360 HFMPP  364 (374)
Q Consensus       360 cFiPP  364 (374)
                      |||||
T Consensus       241 cFiPP  245 (245)
T PF04788_consen  241 CFIPP  245 (245)
T ss_pred             cccCC
Confidence            99999




Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query374
3buu_A229 Uncharacterized LOLA superfamily protein NE2245; P 97.77
3bk5_A237 Putative outer membrane lipoprotein-sorting prote; 97.53
>3buu_A Uncharacterized LOLA superfamily protein NE2245; PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.20A {Nitrosomonas europaea atcc 19718} Back     alignment and structure
Probab=97.77  E-value=0.0012  Score=57.44  Aligned_cols=206  Identities=13%  Similarity=0.105  Sum_probs=115.4

Q ss_pred             hhhHHHHHHHHhhCchHHHhhhhhceeccceeeEeeeecccCccccccccCCceeccEEEEecCCCceEEEEE----eeC
Q 037618          100 TAKYIVQQYIAATGGQAALNAVHSMCVTGQMKITASEFHQGDIEKSVNVKSNEETGGFVLWQKDPDLWFLELV----VSG  175 (374)
Q Consensus       100 sA~YIvqqy~AAtGg~k~~~~v~smyA~GkVrM~~se~~~g~~~~~v~~~~~~e~GgFVlWQ~~Pd~W~~ELv----V~G  175 (374)
                      +|+=|+++..+|.++.      ++..+..+  |....  .+         +..+.--+.+|.+.++.-++.+.    +.|
T Consensus         8 ~a~eil~~~~~~~~~~------~~~~~~~~--~~~~~--~~---------~~~~~~~~~~~~~~~~~~~~~~~~P~~~~g   68 (229)
T 3buu_A            8 TAQSILEKADEIRFPQ------DSFQVNVA--IRTAA--PD---------HAEDLYRYQVLSKGNENSIVMITEPASERG   68 (229)
T ss_dssp             CHHHHHHHHHHHHSCS------SCEEEEEE--EEEEE--TT---------EECCCEEEEEEEETTTEEEEEEEESTTTTT
T ss_pred             CHHHHHHHHHhhccCC------CCeEEEEE--EEEEc--CC---------CceEEEEEEEEecCCceEEEEEeCChhhcC
Confidence            6788999998887653      34444333  43221  11         00122235678888887666654    456


Q ss_pred             eEeeeccCCceeeeccCCCCCCCCCCCCch--h----hhhhccCCccchhhccccceeeeeeeecCcceeEEEeeCChhh
Q 037618          176 CKVICGSNGKLTWRHSSNHQGPISKGPPRP--L----RRFLQGLDPRSTANLFLDASCIGEKVINNEDCFILKLETSPAI  249 (374)
Q Consensus       176 ~KV~AGsdGkvaWR~Tpw~g~HaakGp~RP--L----RR~lQGLDPr~ta~lF~~A~ciGEk~i~gedCFiLkl~a~~~~  249 (374)
                      ..+..  +|+-+|--.|-+..- -+=++.+  +    -.-+.++++   +. .-+...+|++.++|.+|++|++.+-...
T Consensus        69 ~~~l~--~~~~~w~y~P~~~~v-~r~~~~~~~~g~~~~~d~~~~~~---~~-~y~~~l~g~~~v~g~~~~vl~~~pk~~~  141 (229)
T 3buu_A           69 QAILM--KGRDLWVFMPSVSQP-IRLSLSQRLTGQVANGDIARANF---TG-DYHPQLLRNESIDDEDYYVLELTGIDRS  141 (229)
T ss_dssp             CEEEE--ETTEEEEECTTCSSC-EEECTTSEEETTEEHHHHHCCCS---BT-TEEEEEEEEEEETTEEEEEEEEEESSTT
T ss_pred             eEEee--cCCceEEECCCCCce-EEccCcccccccccccccccCCc---cc-cCceEEeeeeeeCCeeEEEEEEEecCCC
Confidence            66663  899999999977542 1111111  0    111122221   11 1234789999999999999999873321


Q ss_pred             hhhcCCCCeeEEEeeeeccccccccceEEeecceeeeeecCCCCceEEeecccccccccccccceeeecCCcceEEEEEe
Q 037618          250 REAQSGPNYEIIHHTIWGYFSQRSGLLIQFEDSRLLTMKTKDGNDVFWETSTESVMHDYRYVDGINIAHGGRTRVTVFRY  329 (374)
Q Consensus       250 l~arS~~~~EiirH~~~GYFSQrtGLLv~lEDs~Ltri~~~~~~~vyWETt~eS~i~DYR~VdGi~IAH~G~t~vtl~Rf  329 (374)
                         +.     .=+..  =|++++|+|+++.|--        +.+.--|++..   ..+|..+||+.+++       -..+
T Consensus       142 ---~~-----y~k~~--lwiD~~t~~p~k~~~~--------d~~G~l~k~~~---~~~~~~~~g~~~~~-------~~~~  193 (229)
T 3buu_A          142 ---VT-----YQKVL--LWVNQSNFRPYKAEFY--------SVSGRLLKTSR---YENFDNILGEMRPT-------RIIM  193 (229)
T ss_dssp             ---SS-----CSEEE--EEEETTTCCEEEEEEE--------CTTSCEEEEEE---EEEEEEETTEEEEE-------EEEE
T ss_pred             ---Cc-----eEEEE--EEEECCCCcEEEEEEE--------cCCCCEEEEEE---eeccEEECCEEEeE-------EEEE
Confidence               11     00111  2678889998887541        11223455433   56677777655542       2222


Q ss_pred             cc-cccCccccceeeeeeeeeeccCCCCCCcccCCCc
Q 037618          330 GE-QSANHKRDMEEKWKIEDVDLNIWGLTKDHFMPPA  365 (374)
Q Consensus       330 Ge-~~~~h~rrmEE~WtIeeV~FNV~GLS~DcFiPP~  365 (374)
                      -+ ....|.+.|    .+.++.||  +|+-+.|-|..
T Consensus       194 ~d~~~~g~~t~~----~~~~~~~~--~l~~~~Ft~~~  224 (229)
T 3buu_A          194 EDALKSGEVSVL----DYSDMKLR--DLPDKIFTKDY  224 (229)
T ss_dssp             EESSSSCCEEEE----EEEEEEEC--CCCGGGSSTGG
T ss_pred             EeCcCCCCEEEE----EEeeeEeC--CCChHhCCHHH
Confidence            22 122244444    36688998  89888886643



>3bk5_A Putative outer membrane lipoprotein-sorting prote; putative outer membrane protein domain, PSI-2, protein struc initiative; HET: MSE; 2.00A {Vibrio parahaemolyticus rimd 2210633} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00