Citrus Sinensis ID: 037618
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 374 | ||||||
| 224094737 | 367 | predicted protein [Populus trichocarpa] | 0.975 | 0.994 | 0.828 | 0.0 | |
| 240256491 | 370 | uncharacterized protein [Arabidopsis tha | 0.981 | 0.991 | 0.834 | 0.0 | |
| 357483365 | 378 | hypothetical protein MTR_5g019880 [Medic | 0.978 | 0.968 | 0.773 | 1e-176 | |
| 338762837 | 371 | hypothetical protein 111018.11 [Coffea c | 0.983 | 0.991 | 0.733 | 1e-169 | |
| 225430798 | 544 | PREDICTED: uncharacterized protein LOC10 | 0.991 | 0.681 | 0.734 | 1e-167 | |
| 297735179 | 363 | unnamed protein product [Vitis vinifera] | 0.967 | 0.997 | 0.75 | 1e-166 | |
| 147820639 | 363 | hypothetical protein VITISV_016191 [Viti | 0.967 | 0.997 | 0.75 | 1e-166 | |
| 156070791 | 373 | unknown [Solanum bulbocastanum] | 0.983 | 0.986 | 0.735 | 1e-165 | |
| 9858773 | 373 | BAC19.5 [Solanum lycopersicum] | 0.983 | 0.986 | 0.733 | 1e-165 | |
| 156070769 | 373 | unknown [Capsicum frutescens] | 0.970 | 0.973 | 0.732 | 1e-163 |
| >gi|224094737|ref|XP_002310214.1| predicted protein [Populus trichocarpa] gi|222853117|gb|EEE90664.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 665 bits (1716), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 304/367 (82%), Positives = 345/367 (94%), Gaps = 2/367 (0%)
Query: 1 MRKLCPNIEKEDGLETVLEVPIPEEMFTSMGSNVQLRWQNLSTWMKAQTSDKWSQPVIAG 60
MRKLCPNI++EDGLETVLE+PIPEEM+T+MGSN +LRWQN+ TWM+AQTSDK SQPVIA
Sbjct: 1 MRKLCPNIDREDGLETVLEIPIPEEMYTNMGSNAELRWQNMLTWMRAQTSDKLSQPVIAA 60
Query: 61 RINELRFLLYLVGSPLIPLQVQLGHSVHKPVKDCSIQASTAKYIVQQYIAATGGQAALNA 120
RINELRFLLY+VGSPLIPLQVQ+GHSVHKPVKDCSIQASTAKYIVQQYIAATGGQAALNA
Sbjct: 61 RINELRFLLYMVGSPLIPLQVQVGHSVHKPVKDCSIQASTAKYIVQQYIAATGGQAALNA 120
Query: 121 VHSMCVTGQMKITASEFHQGDIEKSVNVKSNEETGGFVLWQKDPDLWFLELVVSGCKVIC 180
VHSMCVTG++KI ASEFH+G E+++NVK +EETGGFVLWQKDPDLW LEL+VSGCK+IC
Sbjct: 121 VHSMCVTGEVKIKASEFHEG--EQTINVKGSEETGGFVLWQKDPDLWMLELLVSGCKMIC 178
Query: 181 GSNGKLTWRHSSNHQGPISKGPPRPLRRFLQGLDPRSTANLFLDASCIGEKVINNEDCFI 240
GSNGK++WRHSSN + PISKGPPRPLRRFLQGLDPRSTANLF+DA+CIGEK+I +EDCFI
Sbjct: 179 GSNGKISWRHSSNQRKPISKGPPRPLRRFLQGLDPRSTANLFIDATCIGEKLIKDEDCFI 238
Query: 241 LKLETSPAIREAQSGPNYEIIHHTIWGYFSQRSGLLIQFEDSRLLTMKTKDGNDVFWETS 300
LKLETSPAIREAQSGPNYEIIHHT+WGYFSQRSGLLIQFEDSRL+ ++TKDG D+FWETS
Sbjct: 239 LKLETSPAIREAQSGPNYEIIHHTMWGYFSQRSGLLIQFEDSRLIGLRTKDGEDIFWETS 298
Query: 301 TESVMHDYRYVDGINIAHGGRTRVTVFRYGEQSANHKRDMEEKWKIEDVDLNIWGLTKDH 360
ES+M DYRYVDG+NIAH G+TRVTVFRYGEQSANHKR+MEE WKI++VD NIWGLT +
Sbjct: 299 AESIMDDYRYVDGVNIAHSGQTRVTVFRYGEQSANHKREMEEHWKIDEVDFNIWGLTTEQ 358
Query: 361 FMPPAGV 367
F+PP+ +
Sbjct: 359 FLPPSDL 365
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|240256491|ref|NP_201475.4| uncharacterized protein [Arabidopsis thaliana] gi|332010875|gb|AED98258.1| uncharacterized protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|357483365|ref|XP_003611969.1| hypothetical protein MTR_5g019880 [Medicago truncatula] gi|358344395|ref|XP_003636275.1| hypothetical protein MTR_036s0059 [Medicago truncatula] gi|355502210|gb|AES83413.1| hypothetical protein MTR_036s0059 [Medicago truncatula] gi|355513304|gb|AES94927.1| hypothetical protein MTR_5g019880 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|338762837|gb|AEI98624.1| hypothetical protein 111018.11 [Coffea canephora] | Back alignment and taxonomy information |
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| >gi|225430798|ref|XP_002271040.1| PREDICTED: uncharacterized protein LOC100256475 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|297735179|emb|CBI17541.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|147820639|emb|CAN74294.1| hypothetical protein VITISV_016191 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|156070791|gb|ABU45203.1| unknown [Solanum bulbocastanum] | Back alignment and taxonomy information |
|---|
| >gi|9858773|gb|AAG01120.1|AF273333_5 BAC19.5 [Solanum lycopersicum] | Back alignment and taxonomy information |
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| >gi|156070769|gb|ABU45183.1| unknown [Capsicum frutescens] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 374 | ||||||
| TAIR|locus:2173634 | 370 | AT5G66740 "AT5G66740" [Arabido | 0.981 | 0.991 | 0.834 | 6.9e-173 | |
| TAIR|locus:2025207 | 395 | AT1G75160 "AT1G75160" [Arabido | 0.812 | 0.769 | 0.572 | 2.1e-111 | |
| TAIR|locus:2166414 | 439 | AT5G05840 "AT5G05840" [Arabido | 0.844 | 0.719 | 0.542 | 3.5e-91 | |
| TAIR|locus:2007268 | 494 | AT1G49840 "AT1G49840" [Arabido | 0.975 | 0.738 | 0.457 | 2.2e-80 | |
| TAIR|locus:2101510 | 485 | AT3G19540 "AT3G19540" [Arabido | 0.975 | 0.752 | 0.458 | 9.7e-80 | |
| TAIR|locus:2199191 | 433 | AT1G27690 "AT1G27690" [Arabido | 0.954 | 0.824 | 0.441 | 4.5e-75 | |
| TAIR|locus:2078946 | 438 | AT3G55720 "AT3G55720" [Arabido | 0.772 | 0.659 | 0.467 | 3e-69 | |
| TAIR|locus:2206425 | 417 | AT1G79420 "AT1G79420" [Arabido | 0.823 | 0.738 | 0.421 | 4.8e-62 | |
| TAIR|locus:2144128 | 368 | AT5G06610 "AT5G06610" [Arabido | 0.895 | 0.910 | 0.377 | 7e-54 |
| TAIR|locus:2173634 AT5G66740 "AT5G66740" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1680 (596.4 bits), Expect = 6.9e-173, P = 6.9e-173
Identities = 307/368 (83%), Positives = 338/368 (91%)
Query: 1 MRKLCPNIEKEDGLETVLEVPIPEEMFTSMGSNVQLRWQNLSTWMKAQTSDKWSQPVIAG 60
MRKLCPNI+K+DGLETVLEVPIPEEMF+ MG+NV LRWQN+ TWMKAQTSDKWSQP+IA
Sbjct: 1 MRKLCPNIDKDDGLETVLEVPIPEEMFSGMGNNVALRWQNMMTWMKAQTSDKWSQPLIAA 60
Query: 61 RINELRFLLYLVGSPLIPLQVQLGHSVHKPVKDCSIQASTAKYIVQQYIAATGGQAALNA 120
RINELRFLLYLVGSPLIPLQVQ+GHSVHKPVKDCSIQASTAKYIVQQYIAATGG ALNA
Sbjct: 61 RINELRFLLYLVGSPLIPLQVQVGHSVHKPVKDCSIQASTAKYIVQQYIAATGGPQALNA 120
Query: 121 VHSMCVTGQMKITASEFHQGDIEKSVNVKSNEETGGFVLWQKDPDLWFLELVVSGCKVIC 180
V+SMCVTGQ+K+TASEFHQGD + VN+KSN+E GGFVLWQKDPDLW LELVVSGCKVIC
Sbjct: 121 VNSMCVTGQVKMTASEFHQGD-DSGVNLKSNDEMGGFVLWQKDPDLWCLELVVSGCKVIC 179
Query: 181 GSNGKLTWRHSSNHQGPISKGPPRPLRRFLQGLDPRSTANLFLDASCIGEKVINNEDCFI 240
GSNG+L+WRHSSN Q P S G PRPLRRFLQGLDPRSTANLFLDA+CIGEK+IN EDCFI
Sbjct: 180 GSNGRLSWRHSSNQQTPASTGTPRPLRRFLQGLDPRSTANLFLDATCIGEKIINGEDCFI 239
Query: 241 LKLETSPAIREAQSGPNYEIIHHTIWGYFSQRSGLLIQFEDSRLLTMKTKDGNDVFWETS 300
LKLETSPA+REAQSGPN+EIIHHTIWGYFSQRSGLLIQFEDSRLL M+TK+ DVFWETS
Sbjct: 240 LKLETSPAVREAQSGPNFEIIHHTIWGYFSQRSGLLIQFEDSRLLRMRTKEDEDVFWETS 299
Query: 301 TESVMHDYRYVDGINIAHGGRTRVTVFRYGEQSANHKRDMEEKWKIEDVDLNIWGLTKDH 360
ESVM DYRYVD +NIAHGG+T VTVFRYGE SANH+R M EKW+IE+VD N+WGL+ DH
Sbjct: 300 AESVMDDYRYVDNVNIAHGGKTSVTVFRYGEASANHRRQMTEKWRIEEVDFNVWGLSVDH 359
Query: 361 FMPPAGVR 368
F+PPA ++
Sbjct: 360 FLPPANLQ 367
|
|
| TAIR|locus:2025207 AT1G75160 "AT1G75160" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2166414 AT5G05840 "AT5G05840" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2007268 AT1G49840 "AT1G49840" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2101510 AT3G19540 "AT3G19540" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2199191 AT1G27690 "AT1G27690" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2078946 AT3G55720 "AT3G55720" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2206425 AT1G79420 "AT1G79420" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2144128 AT5G06610 "AT5G06610" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| fgenesh4_pg.C_LG_VII001052 | hypothetical protein (367 aa) | |||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 374 | |||
| pfam04788 | 243 | pfam04788, DUF620, Protein of unknown function (DU | 1e-134 |
| >gnl|CDD|191093 pfam04788, DUF620, Protein of unknown function (DUF620) | Back alignment and domain information |
|---|
Score = 381 bits (981), Expect = e-134
Identities = 127/243 (52%), Positives = 171/243 (70%), Gaps = 2/243 (0%)
Query: 124 MCVTGQMKITASEFHQGDIE-KSVNVKSNEETGGFVLWQKDPDLWFLELVVSGCKVICGS 182
M G++K+ ASEF G+ + N + E+GGFVLWQ PD+W++ELVV G KV GS
Sbjct: 1 MYAMGKVKMIASEFEIGNGKSVRRNSGGSGESGGFVLWQMKPDMWYVELVVGGSKVSAGS 60
Query: 183 NGKLTWRHSSNHQGPISKGPPRPLRRFLQGLDPRSTANLFLDASCIGEKVINNEDCFILK 242
+GK+ WRH+ +KGP RPLRR LQGLDP++TA+LF +A C+GEK ++ EDCF+LK
Sbjct: 61 DGKVVWRHTPWLGAHAAKGPVRPLRRALQGLDPKTTASLFANAQCVGEKRVDGEDCFVLK 120
Query: 243 LETSPAIREAQSGPNYEIIHHTIWGYFSQRSGLLIQFEDSRLLTMKTKDGNDVFWETSTE 302
L+ PA A+S E+I HT++GYFSQRSGLL++ EDS L ++T + V+WET+ E
Sbjct: 121 LDADPAALSARSDGPAEVIRHTLFGYFSQRSGLLVRLEDSHLTRIQTPGADAVYWETTIE 180
Query: 303 SVMHDYRYVDGINIAHGGRTRVTVFRYGEQSANHKRD-MEEKWKIEDVDLNIWGLTKDHF 361
S + DYR VDG+ IAH GR+ VT+FR+GE S +H R MEE W I+DV N+ GL+ D F
Sbjct: 181 SSLGDYRAVDGVMIAHSGRSVVTLFRFGEDSGSHSRTRMEEAWTIDDVAFNVPGLSPDSF 240
Query: 362 MPP 364
+PP
Sbjct: 241 IPP 243
|
Family of uncharacterized proteins. Length = 243 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 374 | |||
| PF04788 | 245 | DUF620: Protein of unknown function (DUF620); Inte | 100.0 |
| >PF04788 DUF620: Protein of unknown function (DUF620); InterPro: IPR006873 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-139 Score=969.99 Aligned_cols=241 Identities=59% Similarity=1.067 Sum_probs=233.1
Q ss_pred ceeccceeeEeeeecccCcccc-ccccCCceeccEEEEecCCCceEEEEEeeCeEeeeccCCceeeeccCCCCCCCCCCC
Q 037618 124 MCVTGQMKITASEFHQGDIEKS-VNVKSNEETGGFVLWQKDPDLWFLELVVSGCKVICGSNGKLTWRHSSNHQGPISKGP 202 (374)
Q Consensus 124 myA~GkVrM~~se~~~g~~~~~-v~~~~~~e~GgFVlWQ~~Pd~W~~ELvV~G~KV~AGsdGkvaWR~Tpw~g~HaakGp 202 (374)
|||||||||+++||++++.... ...++.+|+||||||||+|||||+||||||+||+||||||||||||||||+||||||
T Consensus 1 mya~GkVrM~~se~~~~~~~~~~~~~~~~~e~GgFVlWQ~~Pd~W~~ELvVgG~KV~AGsdGkvaWR~Tpw~g~HAakGp 80 (245)
T PF04788_consen 1 MYAMGKVRMAASEFEGGSGSVTKVGPTGGGEKGGFVLWQMNPDMWYLELVVGGCKVSAGSDGKVAWRHTPWQGSHAAKGP 80 (245)
T ss_pred CceeeeEEEEEEeeccCCccccccccCcccccccEEEEEeCCCeEEEEEEecceEEeeccCCeeeeecCccccchhhcCC
Confidence 8999999999999998742111 235789999999999999999999999999999999999999999999999999999
Q ss_pred CchhhhhhccCCccchhhccccceeeeeeeecCcceeEEEeeCChhhhhhcCCCCeeEEEeeeeccccccccceEEeecc
Q 037618 203 PRPLRRFLQGLDPRSTANLFLDASCIGEKVINNEDCFILKLETSPAIREAQSGPNYEIIHHTIWGYFSQRSGLLIQFEDS 282 (374)
Q Consensus 203 ~RPLRR~lQGLDPr~ta~lF~~A~ciGEk~i~gedCFiLkl~a~~~~l~arS~~~~EiirH~~~GYFSQrtGLLv~lEDs 282 (374)
||||||||||||||+|||||++|+|||||+|||||||||||+||+++|++||++++|||||++|||||||||||||||||
T Consensus 81 ~RPLRR~lQGLDPr~ta~lF~~A~cvGEk~i~gedCFvLkl~ad~~~l~ars~~~~EiirH~~~GYFSQrtGLLv~lEDS 160 (245)
T PF04788_consen 81 PRPLRRFLQGLDPRSTANLFSNAVCVGEKRINGEDCFVLKLEADPSALKARSSGNAEIIRHTLWGYFSQRTGLLVQLEDS 160 (245)
T ss_pred CchHHHHHhhcChhhHHHhhhhceEeeeeccCCcccEEEEeeCCHHHHhhhcCCCcEEEEEeeecccccccceeeeeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeec--CCCCceEEeecccccccccccccceeeecCCcceEEEEEecccccCccc-cceeeeeeeeeeccCCCCCCc
Q 037618 283 RLLTMKT--KDGNDVFWETSTESVMHDYRYVDGINIAHGGRTRVTVFRYGEQSANHKR-DMEEKWKIEDVDLNIWGLTKD 359 (374)
Q Consensus 283 ~Ltri~~--~~~~~vyWETt~eS~i~DYR~VdGi~IAH~G~t~vtl~RfGe~~~~h~r-rmEE~WtIeeV~FNV~GLS~D 359 (374)
||||||+ +++++|||||||||+|+|||+||||||||+|||+||||||||++++|+| ||||+|+||||||||||||||
T Consensus 161 ~L~ri~~~~~~~~~vyWETt~es~i~DYR~Vdgv~IAH~G~t~vtl~RfGe~~~~h~rTrmEE~W~Ieev~FNV~GLS~D 240 (245)
T PF04788_consen 161 HLTRIQSGRPGGDAVYWETTMESSIEDYRAVDGVNIAHSGRTVVTLFRFGENSMSHSRTRMEETWTIEEVDFNVPGLSMD 240 (245)
T ss_pred eeEEeeecCCCCCceEEEEeecccccccccccceeeeccCCceEEEEecccccccCceeeEeeeeEeeeEEeccCCcchh
Confidence 9999999 7899999999999999999999999999999999999999999999987 999999999999999999999
Q ss_pred ccCCC
Q 037618 360 HFMPP 364 (374)
Q Consensus 360 cFiPP 364 (374)
|||||
T Consensus 241 cFiPP 245 (245)
T PF04788_consen 241 CFIPP 245 (245)
T ss_pred cccCC
Confidence 99999
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 374 | |||
| 3buu_A | 229 | Uncharacterized LOLA superfamily protein NE2245; P | 97.77 | |
| 3bk5_A | 237 | Putative outer membrane lipoprotein-sorting prote; | 97.53 |
| >3buu_A Uncharacterized LOLA superfamily protein NE2245; PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.20A {Nitrosomonas europaea atcc 19718} | Back alignment and structure |
|---|
Probab=97.77 E-value=0.0012 Score=57.44 Aligned_cols=206 Identities=13% Similarity=0.105 Sum_probs=115.4
Q ss_pred hhhHHHHHHHHhhCchHHHhhhhhceeccceeeEeeeecccCccccccccCCceeccEEEEecCCCceEEEEE----eeC
Q 037618 100 TAKYIVQQYIAATGGQAALNAVHSMCVTGQMKITASEFHQGDIEKSVNVKSNEETGGFVLWQKDPDLWFLELV----VSG 175 (374)
Q Consensus 100 sA~YIvqqy~AAtGg~k~~~~v~smyA~GkVrM~~se~~~g~~~~~v~~~~~~e~GgFVlWQ~~Pd~W~~ELv----V~G 175 (374)
+|+=|+++..+|.++. ++..+..+ |.... .+ +..+.--+.+|.+.++.-++.+. +.|
T Consensus 8 ~a~eil~~~~~~~~~~------~~~~~~~~--~~~~~--~~---------~~~~~~~~~~~~~~~~~~~~~~~~P~~~~g 68 (229)
T 3buu_A 8 TAQSILEKADEIRFPQ------DSFQVNVA--IRTAA--PD---------HAEDLYRYQVLSKGNENSIVMITEPASERG 68 (229)
T ss_dssp CHHHHHHHHHHHHSCS------SCEEEEEE--EEEEE--TT---------EECCCEEEEEEEETTTEEEEEEEESTTTTT
T ss_pred CHHHHHHHHHhhccCC------CCeEEEEE--EEEEc--CC---------CceEEEEEEEEecCCceEEEEEeCChhhcC
Confidence 6788999998887653 34444333 43221 11 00122235678888887666654 456
Q ss_pred eEeeeccCCceeeeccCCCCCCCCCCCCch--h----hhhhccCCccchhhccccceeeeeeeecCcceeEEEeeCChhh
Q 037618 176 CKVICGSNGKLTWRHSSNHQGPISKGPPRP--L----RRFLQGLDPRSTANLFLDASCIGEKVINNEDCFILKLETSPAI 249 (374)
Q Consensus 176 ~KV~AGsdGkvaWR~Tpw~g~HaakGp~RP--L----RR~lQGLDPr~ta~lF~~A~ciGEk~i~gedCFiLkl~a~~~~ 249 (374)
..+.. +|+-+|--.|-+..- -+=++.+ + -.-+.++++ +. .-+...+|++.++|.+|++|++.+-...
T Consensus 69 ~~~l~--~~~~~w~y~P~~~~v-~r~~~~~~~~g~~~~~d~~~~~~---~~-~y~~~l~g~~~v~g~~~~vl~~~pk~~~ 141 (229)
T 3buu_A 69 QAILM--KGRDLWVFMPSVSQP-IRLSLSQRLTGQVANGDIARANF---TG-DYHPQLLRNESIDDEDYYVLELTGIDRS 141 (229)
T ss_dssp CEEEE--ETTEEEEECTTCSSC-EEECTTSEEETTEEHHHHHCCCS---BT-TEEEEEEEEEEETTEEEEEEEEEESSTT
T ss_pred eEEee--cCCceEEECCCCCce-EEccCcccccccccccccccCCc---cc-cCceEEeeeeeeCCeeEEEEEEEecCCC
Confidence 66663 899999999977542 1111111 0 111122221 11 1234789999999999999999873321
Q ss_pred hhhcCCCCeeEEEeeeeccccccccceEEeecceeeeeecCCCCceEEeecccccccccccccceeeecCCcceEEEEEe
Q 037618 250 REAQSGPNYEIIHHTIWGYFSQRSGLLIQFEDSRLLTMKTKDGNDVFWETSTESVMHDYRYVDGINIAHGGRTRVTVFRY 329 (374)
Q Consensus 250 l~arS~~~~EiirH~~~GYFSQrtGLLv~lEDs~Ltri~~~~~~~vyWETt~eS~i~DYR~VdGi~IAH~G~t~vtl~Rf 329 (374)
+. .=+.. =|++++|+|+++.|-- +.+.--|++.. ..+|..+||+.+++ -..+
T Consensus 142 ---~~-----y~k~~--lwiD~~t~~p~k~~~~--------d~~G~l~k~~~---~~~~~~~~g~~~~~-------~~~~ 193 (229)
T 3buu_A 142 ---VT-----YQKVL--LWVNQSNFRPYKAEFY--------SVSGRLLKTSR---YENFDNILGEMRPT-------RIIM 193 (229)
T ss_dssp ---SS-----CSEEE--EEEETTTCCEEEEEEE--------CTTSCEEEEEE---EEEEEEETTEEEEE-------EEEE
T ss_pred ---Cc-----eEEEE--EEEECCCCcEEEEEEE--------cCCCCEEEEEE---eeccEEECCEEEeE-------EEEE
Confidence 11 00111 2678889998887541 11223455433 56677777655542 2222
Q ss_pred cc-cccCccccceeeeeeeeeeccCCCCCCcccCCCc
Q 037618 330 GE-QSANHKRDMEEKWKIEDVDLNIWGLTKDHFMPPA 365 (374)
Q Consensus 330 Ge-~~~~h~rrmEE~WtIeeV~FNV~GLS~DcFiPP~ 365 (374)
-+ ....|.+.| .+.++.|| +|+-+.|-|..
T Consensus 194 ~d~~~~g~~t~~----~~~~~~~~--~l~~~~Ft~~~ 224 (229)
T 3buu_A 194 EDALKSGEVSVL----DYSDMKLR--DLPDKIFTKDY 224 (229)
T ss_dssp EESSSSCCEEEE----EEEEEEEC--CCCGGGSSTGG
T ss_pred EeCcCCCCEEEE----EEeeeEeC--CCChHhCCHHH
Confidence 22 122244444 36688998 89888886643
|
| >3bk5_A Putative outer membrane lipoprotein-sorting prote; putative outer membrane protein domain, PSI-2, protein struc initiative; HET: MSE; 2.00A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00