Citrus Sinensis ID: 037631

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------39
HKDKRFLVLYHSKRRVSFSPCSMSSTNDDSVAVPKQNQLGYDPSEELLGLGVDLKPRNAAPSTPKPRSWFGPNGQYIRELPCPSCRGRGYTPCVECGIERTRSDCSLCNGKGIMTCRQCSGDCVIWEESVDEQPWENAHSVSPLKVKEDDEVDNLEIKVGVKKKSKRVYHSPPPEVGLKISRSLKSLNAKTGLFTKRMKIIHRDPKLHAQRVAAIKKAKGTAAARKHASETLKAFFSDPENRQKRSIAMKGVRFYCKHCGREGHRKFYCPELKDGLTDRGFKCRLCGERGHNRRTCPKSRLSYHNGTVSKHHRCQICRQRGHNRRTCPQVTGEKRHDNNGQKHIPTSASKTCTCRFCGEKGHNIRTCPRRNLEQLKSEEASQQASSFT
ccccEEEEEEccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHccccHHccccccccHHHHHcccccHHHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
ccccEEEEEcccccEEEEEEcccccccccccccccccccccccHHHHccccccccccccccccccccccccccccEEEEccccccccccccccHHcccccccccccccccccccEEHHccccEEEEEEccccccHHHHccccccEEcccHHHccccccccccccccEccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHccccEEEEcccccccccccccccccccccccEEEEccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccc
HKDKRFLVLYhskrrvsfspcsmsstnddsvavpkqnqlgydpseellglgvdlkprnaapstpkprswfgpngqyirelpcpscrgrgytpcvecgiertrsdcslcngkgimtcrqcsgdcviweesvdeqpwenahsvsplkvkeddevdnleikvgvkkkskrvyhspppevgLKISRSLKSLNAKTGLFTKRMKIIHRDPKLHAQRVAAIKKAKGTAAARKHASETLKAffsdpenrqKRSIAMKGVRFYckhcgreghrkfycpelkdgltdrgfkcrlcgerghnrrtcpksrlsyhngtvskhhrcqicrqrghnrrtcpqvtgekrhdnngqkhiptsasktctcrfcgekghnirtcprrnleqlkseEASQQASSFT
hkdkrflvlyhskrrvsfspcsmsstnddsvavPKQNQLGYDPSEELLGLGVDLKPrnaapstpkprswfgpngQYIRelpcpscrgrGYTPCVECGIERTRSDCSLCNGKGIMTCRQCSGDCVIWEESvdeqpwenahsvsplkvkeddevdnleikvgvkkkskrvyhspppevglkisrsLKSLNAKTGLFTKRMKIIHRDPKLHAQRVAAIKKAKGTAAARKHASEtlkaffsdpenrqkrsiaMKGVRFYCKHcgreghrkfycpelkdgltdRGFKCrlcgerghnrrtcpksrlsyhngtvskhhrcqicrqrghnrrtcpqvtgekrhdnngqkhiptsasktctCRFCGEkghnirtcprrnleqlkseeasqqassft
HKDKRFLVLYHSKRRVSFSPCSMSSTNDDSVAVPKQNQLGYDPSEELLGLGVDLKPRNAAPSTPKPRSWFGPNGQYIRELPCPSCRGRGYTPCVECGIERTRSDCSLCNGKGIMTCRQCSGDCVIWEESVDEQPWENAHSVSPLKVKEDDEVDNLEIKVGVKKKSKRVYHSPPPEVGLKISRSLKSLNAKTGLFTKRMKIIHRDPKLHAQRVaaikkakgtaaarkhaSETLKAFFSDPENRQKRSIAMKGVRFYCKHCGREGHRKFYCPELKDGLTDRGFKCRLCGERGHNRRTCPKSRLSYHNGTVSKHHRCQICRQRGHNRRTCPQVTGEKRHDNNGQKHIPTSASKTCTCRFCGEKGHNIRTCPRRNLEQLKSEEASQQASSFT
*****FLVLYH*********************************************************WFGPNGQYIRELPCPSCRGRGYTPCVECGIERTRSDCSLCNGKGIMTCRQCSGDCVIWEESVD*********************************************************AKTGLFTKRMKIIHRDPKLHAQRVAA********************************IAMKGVRFYCKHCGREGHRKFYCPELKDGLTDRGFKCRLCGERGHNRRTCPKSRLSYHNGTVSKHHRCQICR********************************TCTCRFCGEKGHNIR***********************
***KRFLVLYHSKRRVSFSP*******************GYDPSEELLGL********************GP*GQYIRELPCPSCRGRGYTPCV****************KGIMTCRQCSGDCV**************************EVDNLEIKVGVKKKSKRVYHSPPP*******************************************************************************FYCKHCGREGHRKFY*************KCRLCGERGHNRR******************RCQICRQRGHNRRT*************************CTCRFCGEKGHNIRT**********************
HKDKRFLVLYHSKRRVS************SVAVPKQNQLGYDPSEELLGLGVDLKPRNAAPSTPKPRSWFGPNGQYIRELPCPSCRGRGYTPCVECGIERTRSDCSLCNGKGIMTCRQCSGDCVIWEESVDEQPWENAHSVSPLKVKEDDEVDNLEIKVGVKKKSKRVYHSPPPEVGLKISRSLKSLNAKTGLFTKRMKIIHRDPKLHAQRVA**************ASETLKAFFSDPENRQKRSIAMKGVRFYCKHCGREGHRKFYCPELKDGLTDRGFKCRLCGERGHNRRTCPKSRLSYHNGTVSKHHRCQICRQRGHNRRTCPQVTGEKRHDNNGQKHIPTSASKTCTCRFCGEKGHNIRTCPRRNLEQ**************
*KDKRFLVLYHSKRRVSFSPCSMSSTNDDSVAVPKQNQLGYDPSEELLGLGVDLKPRNAAPSTPKPRSWFGPNGQYIRELPCPSCRGRGYTPCVECGIERTRSDCSLCNGKGIMTCRQCSGDCVIWEESVDEQPWENAHSVSPLKVKEDDEVDNLEIKVGVKKKSKRVYHSPPPEVGLKISRSLKSLNAKTGLFTKRMKIIHRDPKLHAQRVAAIKKAKGTAAARKHASETLKAFFSDPENRQKRSIAMKGVRFYCKHCGREGHRKFYCPELKDGLTDRGFKCRLCGERGHNRRTCPKSR**********HHRCQICRQRGHNRRTCPQ*******************SKTCTCRFCGEKGHNIR*C*********************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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HKDKRFLVLYHSKRRVSFSPCSMSSTNDDSVAVPKQNQLGYDPSEELLGLGVDLKPRNAAPSTPKPRSWFGPNGQYIRELPCPSCRGRGYTPCVECGIERTRSDCSLCNGKGIMTCRQCSGDCVIWEESVDEQPWENAHSVSPLKVKEDDEVDNLEIKVGVKKKSKRVYHSPPPEVGLKISRSLKSLNAKTGLFTKRMKIIHRDPKLHAQRVAAIKKAKGTAAARKHASETLKAFFSDPENRQKRSIAMKGVRFYCKHCGREGHRKFYCPELKDGLTDRGFKCRLCGERGHNRRTCPKSRLSYHNGTVSKHHRCQICRQRGHNRRTCPQVTGEKRHDNNGQKHIPTSASKTCTCRFCGEKGHNIRTCPRRNLEQLKSEEASQQASSFT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query388 2.2.26 [Sep-21-2011]
Q04832271 DNA-binding protein HEXBP yes no 0.288 0.413 0.328 2e-06
P03354 1603 Gag-Pro-Pol polyprotein O yes no 0.154 0.037 0.364 0.0002
O92956 1603 Gag-Pro-Pol polyprotein O yes no 0.154 0.037 0.351 0.0004
Q04095 1603 Gag-Pro-Pol polyprotein O yes no 0.154 0.037 0.351 0.0005
>sp|Q04832|HEXP_LEIMA DNA-binding protein HEXBP OS=Leishmania major GN=HEXBP PE=4 SV=1 Back     alignment and function desciption
 Score = 53.9 bits (128), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/140 (32%), Positives = 54/140 (38%), Gaps = 28/140 (20%)

Query: 256 CKHCGREGHRKFYCPELKDGLTDRGFKCRLCGERGHNRRTCPKSRLSYHNGTV------- 308
           C++CG+EGH    CPE      +R   C  CGE GH  R CP    S   G +       
Sbjct: 18  CRNCGKEGHYARECPEADSKGDERSTTCFRCGEEGHMSRECPNEARSGAAGAMTCFRCGE 77

Query: 309 ----------------SKHHRCQICRQRGHNRRTCPQVTGEKRHDNNGQKHIPTSA---- 348
                           +K   C  C Q GH  R CP   G  R    GQK   + A    
Sbjct: 78  AGHMSRDCPNSAKPGAAKGFECYKCGQEGHLSRDCPSSQGGSR-GGYGQKRGRSGAQGGY 136

Query: 349 SKTCTCRFCGEKGHNIRTCP 368
           S   TC  CG+ GH  R CP
Sbjct: 137 SGDRTCYKCGDAGHISRDCP 156
Binds to single-stranded DNA located in the 5' hexanucleotide repeat region of the L.major leishmanolysin (GP63) gene.
Leishmania major (taxid: 5664)
>sp|P03354|POL_RSVP Gag-Pro-Pol polyprotein OS=Rous sarcoma virus (strain Prague C) GN=gag-pro-pol PE=1 SV=2 Back     alignment and function description
>sp|O92956|POL_RSVSB Gag-Pro-Pol polyprotein OS=Rous sarcoma virus (strain Schmidt-Ruppin B) GN=gag-pro-pol PE=1 SV=2 Back     alignment and function description
>sp|Q04095|POL_RSVSA Gag-Pro-Pol polyprotein OS=Avian leukosis virus RSA GN=gag-pro-pol PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query388
225424920387 PREDICTED: uncharacterized protein LOC10 0.951 0.953 0.731 1e-155
296086422377 unnamed protein product [Vitis vinifera] 0.951 0.978 0.731 1e-155
449452102444 PREDICTED: uncharacterized protein LOC10 0.966 0.844 0.610 1e-139
356524134405 PREDICTED: uncharacterized protein LOC10 0.873 0.837 0.696 1e-139
449486553376 PREDICTED: uncharacterized LOC101211176 0.871 0.898 0.690 1e-135
297808091404 zinc knuckle (CCHC-type) family protein 0.948 0.910 0.623 1e-131
18420148393 CCHC-type zinc knuckle protein [Arabidop 0.953 0.941 0.601 1e-127
21553596393 zinc finger protein [Arabidopsis thalian 0.953 0.941 0.598 1e-127
224108099259 predicted protein [Populus trichocarpa] 0.667 1.0 0.769 1e-111
218188957360 hypothetical protein OsI_03500 [Oryza sa 0.804 0.866 0.623 1e-107
>gi|225424920|ref|XP_002270296.1| PREDICTED: uncharacterized protein LOC100258796 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  554 bits (1428), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 272/372 (73%), Positives = 303/372 (81%), Gaps = 3/372 (0%)

Query: 1   HKDKRFLVLYHSKRRVSFSPCSMSST-NDDSVAVPKQNQLGYDPSEELLGLGVDLKPRNA 59
           HK+ RFL+  HSKR++ F+P  +SS+ NDDSV  PKQ QLGYDPS EL GL VDL+PRN 
Sbjct: 17  HKNVRFLIFLHSKRKIDFTPRIISSSINDDSV--PKQPQLGYDPSVELFGLEVDLQPRNV 74

Query: 60  APSTPKPRSWFGPNGQYIRELPCPSCRGRGYTPCVECGIERTRSDCSLCNGKGIMTCRQC 119
               PK RSWFGPNGQYIRELPCPSCRGRGYTPC ECGIER+R DCS CNGKG+ TCR+C
Sbjct: 75  TSDAPKIRSWFGPNGQYIRELPCPSCRGRGYTPCTECGIERSRLDCSQCNGKGMQTCRKC 134

Query: 120 SGDCVIWEESVDEQPWENAHSVSPLKVKEDDEVDNLEIKVGVKKKSKRVYHSPPPEVGLK 179
            GDCVIWEES+DE+PWE A SVSPLKVKEDDEVDNL+IK+ V++KSKRVY SP PEVGLK
Sbjct: 135 FGDCVIWEESIDERPWEKARSVSPLKVKEDDEVDNLDIKLDVRRKSKRVYQSPSPEVGLK 194

Query: 180 ISRSLKSLNAKTGLFTKRMKIIHRDPKLHAQRVAAIKKAKGTAAARKHASETLKAFFSDP 239
           ISRSLKSLNAKTGLF+KRMKIIHRDPKLHAQRVAAIKKAKGTAAARK ASE LKAFF DP
Sbjct: 195 ISRSLKSLNAKTGLFSKRMKIIHRDPKLHAQRVAAIKKAKGTAAARKRASEALKAFFRDP 254

Query: 240 ENRQKRSIAMKGVRFYCKHCGREGHRKFYCPELKDGLTDRGFKCRLCGERGHNRRTCPKS 299
           ENR+KRSIAMKG +FYCK+CGREGHR+ YCPEL +   DR F+CRLCGE+GHNRRTC +S
Sbjct: 255 ENRRKRSIAMKGAKFYCKNCGREGHRRHYCPELANSSVDRRFRCRLCGEKGHNRRTCRRS 314

Query: 300 RLSYHNGTVSKHHRCQICRQRGHNRRTCPQVTGEKRHDNNGQKHIPTSASKTCTCRFCGE 359
           R S    TVS+HH C+IC   GHNRRTCPQ TG K       +    S S+   CR C E
Sbjct: 315 RESGTRSTVSRHHHCRICGHSGHNRRTCPQGTGLKLDAGGTNRGSLISGSRIYACRLCLE 374

Query: 360 KGHNIRTCPRRN 371
           KGHNIRTCP +N
Sbjct: 375 KGHNIRTCPSKN 386

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|296086422|emb|CBI32011.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449452102|ref|XP_004143799.1| PREDICTED: uncharacterized protein LOC101211176 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356524134|ref|XP_003530687.1| PREDICTED: uncharacterized protein LOC100800156 [Glycine max] Back     alignment and taxonomy information
>gi|449486553|ref|XP_004157330.1| PREDICTED: uncharacterized LOC101211176 [Cucumis sativus] Back     alignment and taxonomy information
>gi|297808091|ref|XP_002871929.1| zinc knuckle (CCHC-type) family protein [Arabidopsis lyrata subsp. lyrata] gi|297317766|gb|EFH48188.1| zinc knuckle (CCHC-type) family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18420148|ref|NP_568393.1| CCHC-type zinc knuckle protein [Arabidopsis thaliana] gi|145334525|ref|NP_001078608.1| CCHC-type zinc knuckle protein [Arabidopsis thaliana] gi|332005431|gb|AED92814.1| CCHC-type zinc knuckle protein [Arabidopsis thaliana] gi|332005432|gb|AED92815.1| CCHC-type zinc knuckle protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|21553596|gb|AAM62689.1| zinc finger protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224108099|ref|XP_002314720.1| predicted protein [Populus trichocarpa] gi|222863760|gb|EEF00891.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|218188957|gb|EEC71384.1| hypothetical protein OsI_03500 [Oryza sativa Indica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query388
TAIR|locus:2149234393 AT5G20220 [Arabidopsis thalian 0.940 0.928 0.580 2.6e-118
ASPGD|ASPL0000028407171 AN5111 [Emericella nidulans (t 0.280 0.637 0.300 5.5e-11
UNIPROTKB|B4DP17160 CNBP "cDNA FLJ61146, highly si 0.247 0.6 0.333 1.2e-10
UNIPROTKB|Q3T0Q6170 CNBP "Cellular nucleic acid-bi 0.247 0.564 0.333 8.2e-10
UNIPROTKB|F1N8C2171 CNBP "Cellular nucleic acid-bi 0.247 0.561 0.333 4e-09
UNIPROTKB|O42395172 CNBP "Cellular nucleic acid-bi 0.247 0.558 0.333 8.8e-09
UNIPROTKB|P62633177 CNBP "Cellular nucleic acid-bi 0.247 0.542 0.333 4.7e-08
UNIPROTKB|Q4R501177 Q4R501 "Brain cDNA, clone: Qnp 0.247 0.542 0.333 4.7e-08
UNIPROTKB|Q5R5R5177 CNBP "Cellular nucleic acid-bi 0.247 0.542 0.333 4.7e-08
RGD|621807177 Cnbp "CCHC-type zinc finger, n 0.247 0.542 0.333 4.7e-08
TAIR|locus:2149234 AT5G20220 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1165 (415.2 bits), Expect = 2.6e-118, P = 2.6e-118
 Identities = 220/379 (58%), Positives = 268/379 (70%)

Query:    14 RRVSFSPCSMSSTNDD-SVAVPKQN--QLGYDPSEELLGLGVDLKPRNAAPSTPKPRSWF 70
             R +S S  S S  N+D SV+  +QN  Q+GYDPSEEL G  VD KPR  +  + +PRSWF
Sbjct:    23 RAISSSSSSSSDNNNDGSVSSSRQNNRQMGYDPSEELFG--VDFKPRFISGDSREPRSWF 80

Query:    71 GPNGQYIRELPCPSCRGRGYTPCVECGIERTRSDCSLCNGKGIMTCRQCSGDCVIWEESV 130
             GPNGQYIRELPCP+CRGRGYT C  CGIER+R DC  C GKGIMTC +C GDCVIWEES+
Sbjct:    81 GPNGQYIRELPCPTCRGRGYTSCSNCGIERSRLDCPQCKGKGIMTCLRCLGDCVIWEESI 140

Query:   131 DEQPWENAHSVSPLKVKEDDEVDNLEIKVGVKKKSKRVYHSPPPEVGLKISRSLKSLNAK 190
             DE+PWE A S SP +VKEDDEVDNLEIK   ++KSKR+Y SP PEVG KISRSLKSLNAK
Sbjct:   141 DERPWEKARSSSPFRVKEDDEVDNLEIKFSKRRKSKRIYQSPTPEVGQKISRSLKSLNAK 200

Query:   191 TGLFTKRMKIIHRDPKLHAQRVXXXXXXXXXXXXXXXXSETLKAFFSDPENRQKRSIAMK 250
             TGLF+KRMKIIHRDP LHAQRV                SE++KAFFS+P NR++RS++MK
Sbjct:   201 TGLFSKRMKIIHRDPVLHAQRVAAIKKAKGTPAARKHASESMKAFFSNPVNREQRSLSMK 260

Query:   251 GVRFYCKHCGREGHRKFYCPELKDGLTDRGFKCRLCGERGHNRRTCPKSRLSYHNGTVSK 310
             G +FYCK+CG+EGHR+ YCPEL     DR F+CR CG +GHNRRTCPKS+     G  ++
Sbjct:   261 GTKFYCKNCGQEGHRRHYCPELGTN-ADRKFRCRGCGGKGHNRRTCPKSKSIVTKGISTR 319

Query:   311 HHRCQICRQRGHNRRTCPQVTGEKRH---DNNGQKHIPTSASKTCTCRFCGEKGHNIRTC 367
             +H+C IC +RGHN RTC + TG       +N+G+  +      T  C FC + GHN+RTC
Sbjct:   320 YHKCGICGERGHNSRTCRKPTGVNPSCSGENSGEDGV---GKITYACGFCKKMGHNVRTC 376

Query:   368 PRRNLEQLKSEEASQQASS 386
             P + +    S+   +Q  S
Sbjct:   377 PSKQVSD--SDSCLEQEGS 393
GO:0003676 "nucleic acid binding" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM
GO:0008270 "zinc ion binding" evidence=IEA
GO:0031072 "heat shock protein binding" evidence=IEA
GO:0051082 "unfolded protein binding" evidence=IEA
ASPGD|ASPL0000028407 AN5111 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|B4DP17 CNBP "cDNA FLJ61146, highly similar to Cellular nucleic acid-binding protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q3T0Q6 CNBP "Cellular nucleic acid-binding protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1N8C2 CNBP "Cellular nucleic acid-binding protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|O42395 CNBP "Cellular nucleic acid-binding protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P62633 CNBP "Cellular nucleic acid-binding protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q4R501 Q4R501 "Brain cDNA, clone: QnpA-14556, similar to human zinc finger protein 9 (a cellular retroviral nucleicacid binding protein) (ZNF9)," [Macaca fascicularis (taxid:9541)] Back     alignment and assigned GO terms
UNIPROTKB|Q5R5R5 CNBP "Cellular nucleic acid-binding protein" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms
RGD|621807 Cnbp "CCHC-type zinc finger, nucleic acid binding protein" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00029002001
SubName- Full=Chromosome chr1 scaffold_46, whole genome shotgun sequence; (351 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query388
PTZ00368148 PTZ00368, PTZ00368, universal minicircle sequence 2e-08
PTZ00368148 PTZ00368, PTZ00368, universal minicircle sequence 5e-08
COG5082190 COG5082, AIR1, Arginine methyltransferase-interact 3e-07
COG5082190 COG5082, AIR1, Arginine methyltransferase-interact 3e-04
>gnl|CDD|173561 PTZ00368, PTZ00368, universal minicircle sequence binding protein (UMSBP); Provisional Back     alignment and domain information 
 Score = 52.9 bits (127), Expect = 2e-08
 Identities = 36/115 (31%), Positives = 42/115 (36%), Gaps = 21/115 (18%)

Query: 256 CKHCGREGHRKFYCPELKDGLTDRGFKCRLCGERGHNRRTCPKSRLSYHNGTVSKHHRCQ 315
           C +CG+ GH    CPE   G   R   C  CG+ GH  R CP        G   +   C 
Sbjct: 55  CYNCGKTGHLSRECPEAPPGSGPR--SCYNCGQTGHISRECPNRA---KGGAARRA--CY 107

Query: 316 ICRQRGHNRRTCPQVTGEKRHDNNGQKHIPTSASKTCTCRFCGEKGHNIRTCPRR 370
            C   GH  R CP        D               TC  CG+ GH  R CP +
Sbjct: 108 NCGGEGHISRDCPNAGKRPGGDK--------------TCYNCGQTGHLSRDCPDK 148

Length = 148
>gnl|CDD|173561 PTZ00368, PTZ00368, universal minicircle sequence binding protein (UMSBP); Provisional Back     alignment and domain information
>gnl|CDD|227414 COG5082, AIR1, Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|227414 COG5082, AIR1, Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 388
PTZ00368148 universal minicircle sequence binding protein (UMS 99.76
PTZ00368148 universal minicircle sequence binding protein (UMS 99.75
COG5082190 AIR1 Arginine methyltransferase-interacting protei 99.62
KOG4400261 consensus E3 ubiquitin ligase interacting with arg 99.15
COG5082190 AIR1 Arginine methyltransferase-interacting protei 99.06
KOG4400261 consensus E3 ubiquitin ligase interacting with arg 98.97
PF00607206 Gag_p24: gag gene protein p24 (core nucleocapsid p 98.37
PF0009818 zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc fi 97.83
PF0009818 zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc fi 97.58
PF1369632 zf-CCHC_2: Zinc knuckle 96.43
PF1369632 zf-CCHC_2: Zinc knuckle 96.19
KOG0119 554 consensus Splicing factor 1/branch point binding p 95.24
PLN03165111 chaperone protein dnaJ-related; Provisional 94.78
PF1391742 zf-CCHC_3: Zinc knuckle 93.56
PF0068466 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR0 93.21
KOG2824281 consensus Glutaredoxin-related protein [Posttransl 93.05
KOG0119 554 consensus Splicing factor 1/branch point binding p 92.6
PF0068466 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR0 92.02
smart0034326 ZnF_C2HC zinc finger. 91.96
PRK14289386 chaperone protein DnaJ; Provisional 91.73
PF1391742 zf-CCHC_3: Zinc knuckle 91.09
PRK14295389 chaperone protein DnaJ; Provisional 90.89
PRK10767371 chaperone protein DnaJ; Provisional 90.85
smart0034326 ZnF_C2HC zinc finger. 90.6
PRK14301373 chaperone protein DnaJ; Provisional 90.5
PRK14294366 chaperone protein DnaJ; Provisional 90.47
PRK14285365 chaperone protein DnaJ; Provisional 90.33
KOG2813406 consensus Predicted molecular chaperone, contains 90.16
PRK14293374 chaperone protein DnaJ; Provisional 90.1
PRK14284391 chaperone protein DnaJ; Provisional 90.05
PRK14296372 chaperone protein DnaJ; Provisional 90.02
PRK14282369 chaperone protein DnaJ; Provisional 89.86
PRK14286372 chaperone protein DnaJ; Provisional 89.7
TIGR02349354 DnaJ_bact chaperone protein DnaJ. This model repre 89.46
PRK14300372 chaperone protein DnaJ; Provisional 89.46
PRK14298377 chaperone protein DnaJ; Provisional 89.37
PRK14280376 chaperone protein DnaJ; Provisional 89.32
PRK14277386 chaperone protein DnaJ; Provisional 89.07
PRK14297380 chaperone protein DnaJ; Provisional 88.97
PTZ00037421 DnaJ_C chaperone protein; Provisional 88.68
PRK14278378 chaperone protein DnaJ; Provisional 88.22
PRK14290365 chaperone protein DnaJ; Provisional 87.51
cd03031147 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like d 87.35
PRK14283378 chaperone protein DnaJ; Provisional 86.97
PRK14276380 chaperone protein DnaJ; Provisional 86.48
PRK14287371 chaperone protein DnaJ; Provisional 86.43
KOG0314 448 consensus Predicted E3 ubiquitin ligase [Posttrans 86.03
PF1439249 zf-CCHC_4: Zinc knuckle 85.97
KOG0314 448 consensus Predicted E3 ubiquitin ligase [Posttrans 85.42
KOG0109 346 consensus RNA-binding protein LARK, contains RRM a 84.79
PRK14279392 chaperone protein DnaJ; Provisional 84.77
PRK14290365 chaperone protein DnaJ; Provisional 84.31
PRK14288369 chaperone protein DnaJ; Provisional 84.13
PRK14281397 chaperone protein DnaJ; Provisional 83.94
COG5222 427 Uncharacterized conserved protein, contains RING Z 83.55
COG5222 427 Uncharacterized conserved protein, contains RING Z 82.53
PRK14301373 chaperone protein DnaJ; Provisional 82.52
KOG0712337 consensus Molecular chaperone (DnaJ superfamily) [ 82.38
PRK14291382 chaperone protein DnaJ; Provisional 82.32
PRK14292371 chaperone protein DnaJ; Provisional 82.3
PRK14284391 chaperone protein DnaJ; Provisional 82.16
PRK14289386 chaperone protein DnaJ; Provisional 82.08
PRK14297380 chaperone protein DnaJ; Provisional 81.66
PRK10767371 chaperone protein DnaJ; Provisional 80.44
PRK14298377 chaperone protein DnaJ; Provisional 80.25
>PTZ00368 universal minicircle sequence binding protein (UMSBP); Provisional Back     alignment and domain information 
Probab=99.76  E-value=9.3e-19  Score=155.30  Aligned_cols=109  Identities=31%  Similarity=0.630  Sum_probs=82.4

Q ss_pred             ccccccccccCccccCCCCCcCCCCcCcccceecccCCCccccCCCCCCCCCCCCCCCcceeeecCCCccccCCCCCCC-
Q 037631          253 RFYCKHCGREGHRKFYCPELKDGLTDRGFKCRLCGERGHNRRTCPKSRLSYHNGTVSKHHRCQICRQRGHNRRTCPQVT-  331 (388)
Q Consensus       253 ~~~Cf~CG~~GH~ar~CP~~~~~~~~~~~~C~~CG~~GH~ardCp~~~~~~~~G~~~~~~~C~~CGe~GH~ardCP~~~-  331 (388)
                      ...||+|++.||++++||.....  .....|++|++.||++++||+....      .....|++|++.||++++||+.. 
T Consensus        27 ~~~C~~Cg~~GH~~~~Cp~~~~~--~~~~~C~~Cg~~GH~~~~Cp~~~~~------~~~~~C~~Cg~~GH~~~~C~~~~~   98 (148)
T PTZ00368         27 ARPCYKCGEPGHLSRECPSAPGG--RGERSCYNCGKTGHLSRECPEAPPG------SGPRSCYNCGQTGHISRECPNRAK   98 (148)
T ss_pred             CccCccCCCCCcCcccCcCCCCC--CCCcccCCCCCcCcCcccCCCcccC------CCCcccCcCCCCCcccccCCCccc
Confidence            56888899999998898875431  1235789999989999999875321      12467999999999999998855 


Q ss_pred             -------CCCCCCCCCCcccCCCC-----CCCccccccCCCCcCCCCCCCC
Q 037631          332 -------GEKRHDNNGQKHIPTSA-----SKTCTCRFCGEKGHNIRTCPRR  370 (388)
Q Consensus       332 -------~~~Cg~~Gh~~~~~~~~-----~~~~~Cy~CGe~GH~ardCP~~  370 (388)
                             ++.|+..||++. +|..     .....||+|++.||+++|||+.
T Consensus        99 ~~~~~~~C~~Cg~~gH~~~-~C~~~~~~~~~~~~C~~Cg~~gH~~~dCp~~  148 (148)
T PTZ00368         99 GGAARRACYNCGGEGHISR-DCPNAGKRPGGDKTCYNCGQTGHLSRDCPDK  148 (148)
T ss_pred             ccccchhhcccCcCCcchh-cCCCccccCCCCCccccCCCcCcccccCCCC
Confidence                   577888888862 3332     2457899999999999999973

>PTZ00368 universal minicircle sequence binding protein (UMSBP); Provisional Back     alignment and domain information
>COG5082 AIR1 Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion] Back     alignment and domain information
>KOG4400 consensus E3 ubiquitin ligase interacting with arginine methyltransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5082 AIR1 Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion] Back     alignment and domain information
>KOG4400 consensus E3 ubiquitin ligase interacting with arginine methyltransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00607 Gag_p24: gag gene protein p24 (core nucleocapsid protein); InterPro: IPR000721 The Gag protein from retroviruses, also known as p24, forms the inner protein layer of the nucleocapsid Back     alignment and domain information
>PF00098 zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF00098 zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF13696 zf-CCHC_2: Zinc knuckle Back     alignment and domain information
>PF13696 zf-CCHC_2: Zinc knuckle Back     alignment and domain information
>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification] Back     alignment and domain information
>PLN03165 chaperone protein dnaJ-related; Provisional Back     alignment and domain information
>PF13917 zf-CCHC_3: Zinc knuckle Back     alignment and domain information
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation Back     alignment and domain information
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification] Back     alignment and domain information
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation Back     alignment and domain information
>smart00343 ZnF_C2HC zinc finger Back     alignment and domain information
>PRK14289 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PF13917 zf-CCHC_3: Zinc knuckle Back     alignment and domain information
>PRK14295 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK10767 chaperone protein DnaJ; Provisional Back     alignment and domain information
>smart00343 ZnF_C2HC zinc finger Back     alignment and domain information
>PRK14301 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14294 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14285 chaperone protein DnaJ; Provisional Back     alignment and domain information
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14293 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14284 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14296 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14282 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14286 chaperone protein DnaJ; Provisional Back     alignment and domain information
>TIGR02349 DnaJ_bact chaperone protein DnaJ Back     alignment and domain information
>PRK14300 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14298 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14280 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14277 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14297 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PTZ00037 DnaJ_C chaperone protein; Provisional Back     alignment and domain information
>PRK14278 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14290 chaperone protein DnaJ; Provisional Back     alignment and domain information
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs Back     alignment and domain information
>PRK14283 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14276 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14287 chaperone protein DnaJ; Provisional Back     alignment and domain information
>KOG0314 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14392 zf-CCHC_4: Zinc knuckle Back     alignment and domain information
>KOG0314 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only] Back     alignment and domain information
>PRK14279 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14290 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14288 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14281 chaperone protein DnaJ; Provisional Back     alignment and domain information
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] Back     alignment and domain information
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] Back     alignment and domain information
>PRK14301 chaperone protein DnaJ; Provisional Back     alignment and domain information
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14291 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14292 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14284 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14289 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14297 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK10767 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14298 chaperone protein DnaJ; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query388
2lli_A124 Protein AIR2; RNA surveillance, RNA degradation, R 6e-13
2lli_A124 Protein AIR2; RNA surveillance, RNA degradation, R 5e-04
3k1f_M197 Transcription initiation factor IIB; RNA polymeras 3e-05
3nyb_B83 Protein AIR2; polya RNA polymerase, zinc knuckle p 3e-05
3nyb_B83 Protein AIR2; polya RNA polymerase, zinc knuckle p 7e-04
2ihx_A61 Nucleocapsid (NC) protein; protein-RNA complex, vi 3e-04
1cl4_A60 Protein (GAG polyprotein); nucleocapsid protein, R 6e-04
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae} Length = 124 Back     alignment and structure
 Score = 64.4 bits (156), Expect = 6e-13
 Identities = 31/127 (24%), Positives = 47/127 (37%), Gaps = 21/127 (16%)

Query: 256 CKHCGREGHRKFYCPELKDGLT-----------DRGFKCRLCGERGHNRRTCPKSRLSYH 304
           C +C + GH K  CP +                 +  +C  C E GH R  CP       
Sbjct: 7   CNNCSQRGHLKKDCPHIICSYCGATDDHYSRHCPKAIQCSKCDEVGHYRSQCPHKW---- 62

Query: 305 NGTVSKHHRCQICRQRGHNRRTCPQVTGEKRHDNNGQKHIP-TSASKTCTCRFCGEKGHN 363
                K  +C +C+ + H++  CP +       ++ +K  P      T  C  CG KGH 
Sbjct: 63  -----KKVQCTLCKSKKHSKERCPSIWRAYILVDDNEKAKPKVLPFHTIYCYNCGGKGHF 117

Query: 364 IRTCPRR 370
              C  +
Sbjct: 118 GDDCKEK 124
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae} Length = 124 Back     alignment and structure
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae} Length = 197 Back     alignment and structure
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae} Length = 83 Back     alignment and structure
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae} Length = 83 Back     alignment and structure
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus} Length = 61 Back     alignment and structure
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A Length = 60 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query388
2lli_A124 Protein AIR2; RNA surveillance, RNA degradation, R 99.83
3nyb_B83 Protein AIR2; polya RNA polymerase, zinc knuckle p 99.53
2lli_A124 Protein AIR2; RNA surveillance, RNA degradation, R 99.51
2li8_A74 Protein LIN-28 homolog A; zinc finger, micro RNA, 99.4
3nyb_B83 Protein AIR2; polya RNA polymerase, zinc knuckle p 99.39
2jyl_A105 Capsid protein P24 (Ca); HIV-1, carboxy-terminal, 99.32
1baj_A101 GAG polyprotein; capsid, HIV-1 assembly protein, v 99.31
2li8_A74 Protein LIN-28 homolog A; zinc finger, micro RNA, 99.24
3ds4_A86 HIV-1 capsid protein; HIV, mutant, polyprotein, co 99.23
2a51_A39 Nucleocapsid protein; sivlhoest, structure, NCP8, 99.06
2ec7_A49 GAG polyprotein (PR55GAG); nucleocapsid protein, H 99.05
1qrj_B199 HTLV-I capsid protein; retrovirus, two-domain prot 99.03
2a51_A39 Nucleocapsid protein; sivlhoest, structure, NCP8, 99.01
2ihx_A61 Nucleocapsid (NC) protein; protein-RNA complex, vi 98.99
1a1t_A55 Nucleocapsid protein; stem-loop RNA, viral protein 98.96
2ec7_A49 GAG polyprotein (PR55GAG); nucleocapsid protein, H 98.95
2bl6_A37 Nucleocapsid protein P11; lentivirus, polyprotein, 98.95
1cl4_A60 Protein (GAG polyprotein); nucleocapsid protein, R 98.94
2cqf_A63 RNA-binding protein LIN-28; CCHC zinc-finger, stru 98.93
1a1t_A55 Nucleocapsid protein; stem-loop RNA, viral protein 98.89
2bl6_A37 Nucleocapsid protein P11; lentivirus, polyprotein, 98.89
2cqf_A63 RNA-binding protein LIN-28; CCHC zinc-finger, stru 98.86
2ihx_A61 Nucleocapsid (NC) protein; protein-RNA complex, vi 98.83
1cl4_A60 Protein (GAG polyprotein); nucleocapsid protein, R 98.81
3h47_A231 Ca, capsid protein P24; hexamer, engineered disulf 98.79
3ts2_A148 Protein LIN-28 homolog A; microrna biogenesis, pro 98.78
3gv2_A342 Ca, fusion protein consisting of capsid protein P2 98.67
3ts2_A148 Protein LIN-28 homolog A; microrna biogenesis, pro 98.57
1eia_A207 EIAV capsid protein P26; viral capsid, HIV, lentiv 98.54
1eoq_A96 GAG polyprotein capsid protein P27; virus/viral pr 98.52
1d1d_A262 Protein (capsid protein); two independent domains 98.45
3g21_A77 GAG polyprotein, capsid protein; alpha-helical bun 98.16
3g1g_A87 GAG polyprotein, capsid protein; alpha-helical bun 97.97
1dsq_A26 Nucleic acid binding protein P14; CCHC type zinc f 97.83
1nc8_A29 Nucleocapsid protein; HIV-2, RNA recognition, zinc 97.56
1a6b_B40 Momulv, zinc finger protein NCP10; nucleocapsid pr 97.54
1nc8_A29 Nucleocapsid protein; HIV-2, RNA recognition, zinc 97.38
1dsq_A26 Nucleic acid binding protein P14; CCHC type zinc f 97.38
3tir_A226 ROUS sarcoma virus capsid protein P27; viral capsi 97.23
1u6p_A56 GAG polyprotein; MLV, A-minor K-turn, stem loop, b 97.16
1a6b_B40 Momulv, zinc finger protein NCP10; nucleocapsid pr 97.15
1u6p_A56 GAG polyprotein; MLV, A-minor K-turn, stem loop, b 96.69
2ysa_A55 Retinoblastoma-binding protein 6; zinc finger, CCH 96.62
1exk_A79 DNAJ protein; extended beta-hairpin, CXXCXGXG, zin 96.47
2ysa_A55 Retinoblastoma-binding protein 6; zinc finger, CCH 96.44
2ctt_A104 DNAJ homolog subfamily A member 3; ZING finger, be 94.97
1u57_A48 GAG polyprotein, HIV-1; particle assembly, viral p 94.0
1nlt_A248 Protein YDJ1, mitochondrial protein import protein 92.34
1exk_A79 DNAJ protein; extended beta-hairpin, CXXCXGXG, zin 89.31
2bx9_A53 Anti-trap, AT, tryptophan RNA-binding attenuator p 88.1
3lcz_A53 YCZA, inhibitor of trap, regulated by T-box (Trp) 86.42
2ctt_A104 DNAJ homolog subfamily A member 3; ZING finger, be 85.13
1nlt_A248 Protein YDJ1, mitochondrial protein import protein 83.04
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae} Back     alignment and structure
Probab=99.83  E-value=4.1e-21  Score=164.59  Aligned_cols=96  Identities=32%  Similarity=0.706  Sum_probs=64.8

Q ss_pred             ccccccccccCccccCCCCCcCCCCcCcccceecccC-CCccccCCCCCCCCCCCCCCCcceeeecCCCccccCCCCCC-
Q 037631          253 RFYCKHCGREGHRKFYCPELKDGLTDRGFKCRLCGER-GHNRRTCPKSRLSYHNGTVSKHHRCQICRQRGHNRRTCPQV-  330 (388)
Q Consensus       253 ~~~Cf~CG~~GH~ar~CP~~~~~~~~~~~~C~~CG~~-GH~ardCp~~~~~~~~G~~~~~~~C~~CGe~GH~ardCP~~-  330 (388)
                      ...||+|++.||++++||.         ..||+||+. ||++++||..            ..||+|++.||++++||+. 
T Consensus         4 ~~~C~~C~~~GH~~~~Cp~---------~~C~~Cg~~~gH~~~~C~~~------------~~C~~Cg~~GH~~~~C~~~~   62 (124)
T 2lli_A            4 APKCNNCSQRGHLKKDCPH---------IICSYCGATDDHYSRHCPKA------------IQCSKCDEVGHYRSQCPHKW   62 (124)
T ss_dssp             SSCCSSCSSSSCCTTTTTS---------CCCTTTCCTTTCCTTTGGGS------------SCSSSSSCSSSSTTTSCCCC
T ss_pred             CCcccCCCCCCcCcccCcC---------CcCcCCCCcCCccCcccCCc------------ccccccCCCCCccccCcCcc
Confidence            4568888888888888887         257777766 6777777653            3566666666666666653 


Q ss_pred             ---CCCCCCCCCCCcccCCC--------------------CCCCccccccCCCCcCCCCCCCC
Q 037631          331 ---TGEKRHDNNGQKHIPTS--------------------ASKTCTCRFCGEKGHNIRTCPRR  370 (388)
Q Consensus       331 ---~~~~Cg~~Gh~~~~~~~--------------------~~~~~~Cy~CGe~GH~ardCP~~  370 (388)
                         .++.|+..||++. +|.                    ....++||+|++.|||++|||+.
T Consensus        63 ~~~~C~~Cg~~GH~~~-~Cp~~~~~y~~~~~~~~~~~~~~~~~~~~Cy~Cg~~GH~a~dCp~~  124 (124)
T 2lli_A           63 KKVQCTLCKSKKHSKE-RCPSIWRAYILVDDNEKAKPKVLPFHTIYCYNCGGKGHFGDDCKEK  124 (124)
T ss_dssp             CCCSSSSSCSSCCCTT-TCCCSTTSCCSSSCCCCCCCSCCCCCCCCTTTTSSSCTTTTTSCCC
T ss_pred             cCccCCCCCcCCcchh-hCCCccccccccCccccccccccCCCCCCcCCCCCCCcCcccCcCC
Confidence               2455555555541 111                    12357899999999999999974
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens} Back     alignment and structure
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2jyl_A Capsid protein P24 (Ca); HIV-1, carboxy-terminal, dimerization domain, CTD, 3D- NMR, capsid protein (Ca), double mutant; NMR {Human immunodeficiency virus 1} PDB: 2k1c_A* 2l6e_A* Back     alignment and structure
>1baj_A GAG polyprotein; capsid, HIV-1 assembly protein, viral protein; 2.60A {Human immunodeficiency virus 1} SCOP: a.28.3.1 Back     alignment and structure
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens} Back     alignment and structure
>3ds4_A HIV-1 capsid protein; HIV, mutant, polyprotein, complex(viral protein/peptide), mainly alpha; 1.12A {Human immunodeficiency virus 1} PDB: 3dph_A 1a43_A 2xt1_A 2buo_A 3lry_A 2kod_A 3ds1_A 3dtj_A 3ds0_A 3ds5_A 3ds2_A 3ds3_A 2jo0_A 2jyg_A 2xxm_A 2xv6_A 2ont_A 1aum_A 1a8o_A 4arg_B ... Back     alignment and structure
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic} Back     alignment and structure
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1 Back     alignment and structure
>1qrj_B HTLV-I capsid protein; retrovirus, two-domain protein, alpha helical protein, heteronuclear spectroscopy; NMR {Human t-cell lymphotrophic virus TYPE1} SCOP: a.28.3.1 a.73.1.1 Back     alignment and structure
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic} Back     alignment and structure
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus} Back     alignment and structure
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A Back     alignment and structure
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1 Back     alignment and structure
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus} Back     alignment and structure
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A Back     alignment and structure
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A Back     alignment and structure
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus} Back     alignment and structure
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus} Back     alignment and structure
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A Back     alignment and structure
>3h47_A Ca, capsid protein P24; hexamer, engineered disulfide bonds, viral protein; 1.90A {Human immunodeficiency virus type 1} PDB: 3h4e_A 2lf4_A 3mge_A 3p05_A 3p0a_A 3dik_A 3nte_A 1e6j_P Back     alignment and structure
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A* Back     alignment and structure
>3gv2_A Ca, fusion protein consisting of capsid protein P24, carbon dioxide-concentrating mechanism...; hexameric retroviral capsid; 7.00A {Human immunodeficiency virus type 1} Back     alignment and structure
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A* Back     alignment and structure
>1eia_A EIAV capsid protein P26; viral capsid, HIV, lentivirus, viral protein; 2.70A {Equine infectious anemia virus} SCOP: a.28.3.1 a.73.1.1 PDB: 2eia_A Back     alignment and structure
>1eoq_A GAG polyprotein capsid protein P27; virus/viral protein; NMR {Rous sarcoma virus - prague C} SCOP: a.28.3.1 Back     alignment and structure
>1d1d_A Protein (capsid protein); two independent domains helical bundles, virus/viral protein; NMR {Rous sarcoma virus} SCOP: a.28.3.1 a.73.1.1 Back     alignment and structure
>3g21_A GAG polyprotein, capsid protein; alpha-helical bundle, virion, viral protein, retrovirus; 0.90A {Rous sarcoma virus} PDB: 3g1i_A 3g28_A 3g29_A 3g26_A 3g0v_A Back     alignment and structure
>3g1g_A GAG polyprotein, capsid protein; alpha-helical bundle, virion, viral protein, retrovirus; 2.01A {Rous sarcoma virus} Back     alignment and structure
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A Back     alignment and structure
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1 Back     alignment and structure
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A Back     alignment and structure
>3tir_A ROUS sarcoma virus capsid protein P27; viral capsid protein, viral protein; 4.10A {Rous sarcoma virus} PDB: 2x8q_A Back     alignment and structure
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A Back     alignment and structure
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1 Back     alignment and structure
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A Back     alignment and structure
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1 Back     alignment and structure
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1u57_A GAG polyprotein, HIV-1; particle assembly, viral protein; NMR {Human immunodeficiency virus 1} Back     alignment and structure
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1 Back     alignment and structure
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1 Back     alignment and structure
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C* Back     alignment and structure
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A Back     alignment and structure
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 388
d2exfa142 g.40.1.1 (A:12-53) HIV nucleocapsid {Human immunod 8e-04
d2exfa142 g.40.1.1 (A:12-53) HIV nucleocapsid {Human immunod 0.003
>d2exfa1 g.40.1.1 (A:12-53) HIV nucleocapsid {Human immunodeficiency virus type 1, different isolates [TaxId: 11676]} Length = 42 Back     information, alignment and structure

class: Small proteins
fold: Retrovirus zinc finger-like domains
superfamily: Retrovirus zinc finger-like domains
family: Retrovirus zinc finger-like domains
domain: HIV nucleocapsid
species: Human immunodeficiency virus type 1, different isolates [TaxId: 11676]

 Score = 34.8 bits (80), Expect = 8e-04
 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 6/43 (13%)

Query: 256 CKHCGREGHRKFYCPELKDGLTDRGFKCRLCGERGHNRRTCPK 298
           C +CG+EGH    C         R   C  CG+ GH  + C +
Sbjct: 4   CFNCGKEGHTARNCRA------PRKKGCWKCGKEGHQMKDCTE 40
>d2exfa1 g.40.1.1 (A:12-53) HIV nucleocapsid {Human immunodeficiency virus type 1, different isolates [TaxId: 11676]} Length = 42 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query388
d2exfa142 HIV nucleocapsid {Human immunodeficiency virus typ 99.12
d2exfa142 HIV nucleocapsid {Human immunodeficiency virus typ 99.03
d1qrjb184 HTLV-I capsid protein {Human T-cell leukemia virus 98.82
d2eiaa175 EIAV capsid protein p26 {Equine infectious anemia 98.71
d1a8oa_70 HIV capsid protein, dimerisation domain {Human imm 98.46
d1d1da180 RSV capsid protein {Rous sarcoma virus [TaxId: 118 97.92
d1nc8a_29 HIV nucleocapsid {Human immunodeficiency virus typ 97.72
d1nc8a_29 HIV nucleocapsid {Human immunodeficiency virus typ 97.41
d1nlta374 Mitochondrial protein import protein mas5 (Hsp40, 96.17
d1dsqa_26 Nucleic acid binding protein p14 {Mouse mammary tu 95.05
d1dsqa_26 Nucleic acid binding protein p14 {Mouse mammary tu 94.47
d1a6bb_40 Zinc finger protein ncp10 {Moloney murine leukemia 94.1
d1exka_79 Cysteine-rich domain of the chaperone protein DnaJ 93.46
d1exka_79 Cysteine-rich domain of the chaperone protein DnaJ 91.26
d1nlta374 Mitochondrial protein import protein mas5 (Hsp40, 90.07
d1a6bb_40 Zinc finger protein ncp10 {Moloney murine leukemia 87.29
d1pfta_50 Transcription initiation factor TFIIB, N-terminal 84.12
>d2exfa1 g.40.1.1 (A:12-53) HIV nucleocapsid {Human immunodeficiency virus type 1, different isolates [TaxId: 11676]} Back     information, alignment and structure
class: Small proteins
fold: Retrovirus zinc finger-like domains
superfamily: Retrovirus zinc finger-like domains
family: Retrovirus zinc finger-like domains
domain: HIV nucleocapsid
species: Human immunodeficiency virus type 1, different isolates [TaxId: 11676]

Probab=99.12  E-value=1.3e-11  Score=85.90  Aligned_cols=40  Identities=33%  Similarity=0.865  Sum_probs=30.9

Q ss_pred             ceeeecCCCccccCCCCCCCCCCCCCCCCCcccCCCCCCCccccccCCCCcCCCCCCCC
Q 037631          312 HRCQICRQRGHNRRTCPQVTGEKRHDNNGQKHIPTSASKTCTCRFCGEKGHNIRTCPRR  370 (388)
Q Consensus       312 ~~C~~CGe~GH~ardCP~~~~~~Cg~~Gh~~~~~~~~~~~~~Cy~CGe~GH~ardCP~~  370 (388)
                      +.||+|++.||++++||.+.                   ...||+||+.||++++||++
T Consensus         2 i~C~~Cg~~GH~~~~Cp~~~-------------------~~~C~~Cg~~GH~~~~Cp~r   41 (42)
T d2exfa1           2 VKCFNCGKEGHTARNCRAPR-------------------KKGCWKCGKEGHQMKDCTER   41 (42)
T ss_dssp             CCCTTTCCSSSCTTTCSSCC-------------------CSSCSSSCCSSSCTTTCCSS
T ss_pred             CccccCCCcCcCcccCcCCC-------------------cCccccCCCCCeecccCCCC
Confidence            46888888888888888653                   24588888888888888875
>d2exfa1 g.40.1.1 (A:12-53) HIV nucleocapsid {Human immunodeficiency virus type 1, different isolates [TaxId: 11676]} Back     information, alignment and structure
>d1qrjb1 a.28.3.1 (B:131-214) HTLV-I capsid protein {Human T-cell leukemia virus type 1 [TaxId: 11908]} Back     information, alignment and structure
>d2eiaa1 a.28.3.1 (A:148-222) EIAV capsid protein p26 {Equine infectious anemia virus [TaxId: 11665]} Back     information, alignment and structure
>d1a8oa_ a.28.3.1 (A:) HIV capsid protein, dimerisation domain {Human immunodeficiency virus type 1 [TaxId: 11676]} Back     information, alignment and structure
>d1d1da1 a.28.3.1 (A:151-230) RSV capsid protein {Rous sarcoma virus [TaxId: 11886]} Back     information, alignment and structure
>d1nc8a_ g.40.1.1 (A:) HIV nucleocapsid {Human immunodeficiency virus type 2 [TaxId: 11709]} Back     information, alignment and structure
>d1nc8a_ g.40.1.1 (A:) HIV nucleocapsid {Human immunodeficiency virus type 2 [TaxId: 11709]} Back     information, alignment and structure
>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1dsqa_ g.40.1.1 (A:) Nucleic acid binding protein p14 {Mouse mammary tumor virus [TaxId: 11757]} Back     information, alignment and structure
>d1a6bb_ g.40.1.1 (B:) Zinc finger protein ncp10 {Moloney murine leukemia virus, MoMLV [TaxId: 11801]} Back     information, alignment and structure
>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1a6bb_ g.40.1.1 (B:) Zinc finger protein ncp10 {Moloney murine leukemia virus, MoMLV [TaxId: 11801]} Back     information, alignment and structure
>d1pfta_ g.41.3.1 (A:) Transcription initiation factor TFIIB, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure