Citrus Sinensis ID: 037642

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70----
Protein Sequence
WGCSPGKFQLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFESTSSSSS
Secondary Structure (PSIPRED)
cccccEEEEEEEccEEEEEEEEcEEEEEEccccEEEEEccccEEEEccccEEEEEEcEEEEEEEEEEccccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEcccEEEEEEEEEEEEEccccccEEEEccccEEEEccccEEEEEEEcEEEEEEEEcccccccc
Coil and Loop (DISEMBL)
wgcspgkfqlkfdAEETCYLLKgkvkvypkgssdwvefgagdlvtipkglsctwdVSVAVDKYYKfestsssss
Flexible Loop (DISEMBL)
wgcspgkfqlkfdAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKfestsssss
Low Complexity Region (SEG)
WGCSPGKFQLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFEstsssss
Disordered region (IsUnstruct)
*******FQLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKF********
Disordered Region (DISOPRED)
WGCSPGKFQLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYK**S******
Disordered Region (DISEMBL)
WGCSPGKFQLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYK*********
Disordered Region (DISPRO)
WGCSPGKFQLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFES******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
WGCSPGKFQLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFESTSSSSS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	74
351725759	104	uncharacterized protein LOC100500522 [Gl	0.972	0.692	0.902	6e-31
388493876	103	unknown [Medicago truncatula]	0.959	0.689	0.887	7e-30
356574867	112	PREDICTED: uncharacterized protein LOC10	1.0	0.660	0.824	8e-30
356505082	112	PREDICTED: uncharacterized protein LOC10	0.905	0.598	0.925	2e-29
357510309	107	hypothetical protein MTR_7g099200 [Medic	0.905	0.626	0.940	5e-29
255585910	114	conserved hypothetical protein [Ricinus	0.905	0.587	0.910	7e-29
356533662	112	PREDICTED: uncharacterized protein LOC10	1.0	0.660	0.783	8e-29
224070023	109	predicted protein [Populus trichocarpa]	0.905	0.614	0.895	1e-28
356537214	110	PREDICTED: uncharacterized protein LOC10	0.905	0.609	0.895	2e-28
225437941	115	PREDICTED: uncharacterized protein LOC10	0.905	0.582	0.794	1e-24

>gi|351725759|ref|NP_001235568.1| uncharacterized protein LOC100500522 [Glycine max] gi|255630534|gb|ACU15625.1| unknown [Glycine max]

 Score =  137 bits (346), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 65/72 (90%), Positives = 70/72 (97%)

Query: 1   WGCSPGKFQLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAV 60
           WGCSPGK+QLKFDAEETCYLLKGKVK YPKGSS++VEFGAGDLVTIPKGL+CTWDVSVAV
Sbjct: 33  WGCSPGKYQLKFDAEETCYLLKGKVKAYPKGSSEFVEFGAGDLVTIPKGLNCTWDVSVAV 92

Query: 61  DKYYKFESTSSS 72
           DKYYKFES +SS
Sbjct: 93  DKYYKFESPNSS 104

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388493876|gb|AFK35004.1| unknown [Medicago truncatula]

 Score =  134 bits (337), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 63/71 (88%), Positives = 69/71 (97%)

Query: 1   WGCSPGKFQLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAV 60
           WGCSPGK+QLKFDAEETCYLLKGKVK Y KGSS++VEFGAGDLVTIPKGLSCTWDVS+AV
Sbjct: 33  WGCSPGKYQLKFDAEETCYLLKGKVKAYTKGSSEFVEFGAGDLVTIPKGLSCTWDVSIAV 92

Query: 61  DKYYKFESTSS 71
           DKYYKFE++SS
Sbjct: 93  DKYYKFEASSS 103

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356574867|ref|XP_003555565.1| PREDICTED: uncharacterized protein LOC100810390 [Glycine max]

 Score =  134 bits (336), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 61/74 (82%), Positives = 71/74 (95%)

Query: 1   WGCSPGKFQLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAV 60
           WGC PGKF LKFDA+ETCYLL+GKVKVYPKGSS++V+FGAGDLVTIPKGLSCTWDVS+AV
Sbjct: 37  WGCPPGKFMLKFDAQETCYLLRGKVKVYPKGSSEFVQFGAGDLVTIPKGLSCTWDVSIAV 96

Query: 61  DKYYKFESTSSSSS 74
           DK+YKFES+S++ S
Sbjct: 97  DKHYKFESSSTTPS 110

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505082|ref|XP_003521321.1| PREDICTED: uncharacterized protein LOC100793722 [Glycine max]

 Score =  132 bits (333), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 62/67 (92%), Positives = 66/67 (98%)

Query: 1  WGCSPGKFQLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAV 60
          WGCSPGK+QLKFDAEETCYL+KGKVK YPKGSS++VEFGAGDLVTIPKGLSCTWDVSVAV
Sbjct: 33 WGCSPGKYQLKFDAEETCYLVKGKVKAYPKGSSEFVEFGAGDLVTIPKGLSCTWDVSVAV 92

Query: 61 DKYYKFE 67
          DKYYKFE
Sbjct: 93 DKYYKFE 99

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357510309|ref|XP_003625443.1| hypothetical protein MTR_7g099200 [Medicago truncatula] gi|355500458|gb|AES81661.1| hypothetical protein MTR_7g099200 [Medicago truncatula]

 Score =  131 bits (330), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 63/67 (94%), Positives = 65/67 (97%)

Query: 1  WGCSPGKFQLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAV 60
          WGCSPGK+QLKFDAEETCYLLKGKVK Y KGSSD+VEFGAGDLVTIPKGLSCTWDVSVAV
Sbjct: 29 WGCSPGKYQLKFDAEETCYLLKGKVKAYTKGSSDFVEFGAGDLVTIPKGLSCTWDVSVAV 88

Query: 61 DKYYKFE 67
          DKYYKFE
Sbjct: 89 DKYYKFE 95

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255585910|ref|XP_002533628.1| conserved hypothetical protein [Ricinus communis] gi|223526486|gb|EEF28757.1| conserved hypothetical protein [Ricinus communis]

 Score =  131 bits (329), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 61/67 (91%), Positives = 65/67 (97%)

Query: 1  WGCSPGKFQLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAV 60
          WGCSPG++QLKFDAEETCYLLKGKVK YPKGSS++VEFGAGDLV IPKGLSCTWDVSVAV
Sbjct: 30 WGCSPGRYQLKFDAEETCYLLKGKVKAYPKGSSEYVEFGAGDLVIIPKGLSCTWDVSVAV 89

Query: 61 DKYYKFE 67
          DKYYKFE
Sbjct: 90 DKYYKFE 96

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356533662|ref|XP_003535379.1| PREDICTED: uncharacterized protein LOC100799672 [Glycine max]

 Score =  130 bits (328), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 58/74 (78%), Positives = 70/74 (94%)

Query: 1   WGCSPGKFQLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAV 60
           WGC PGKF LKFDA+ETCYLL+G+VKVYPKGSS++V+F AGDLVTIPKG+SCTWDVS+AV
Sbjct: 37  WGCPPGKFMLKFDAQETCYLLRGEVKVYPKGSSEFVQFAAGDLVTIPKGISCTWDVSIAV 96

Query: 61  DKYYKFESTSSSSS 74
           DK+YKFES+S++ S
Sbjct: 97  DKHYKFESSSTAPS 110

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224070023|ref|XP_002303103.1| predicted protein [Populus trichocarpa] gi|222844829|gb|EEE82376.1| predicted protein [Populus trichocarpa]

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 60/67 (89%), Positives = 66/67 (98%)

Query: 1  WGCSPGKFQLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAV 60
          WGCSPG++QLKFDAEETCYL+KGKVKVYPKGS ++VEFGAGDLVTIP+GLSCTWDVSVAV
Sbjct: 29 WGCSPGRYQLKFDAEETCYLVKGKVKVYPKGSLEFVEFGAGDLVTIPRGLSCTWDVSVAV 88

Query: 61 DKYYKFE 67
          DKYYKFE
Sbjct: 89 DKYYKFE 95

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356537214|ref|XP_003537124.1| PREDICTED: uncharacterized protein LOC100795642 [Glycine max]

 Score =  129 bits (324), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 60/67 (89%), Positives = 65/67 (97%)

Query: 1   WGCSPGKFQLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAV 60
           WGCSPGK+QLKFDAEETCYLLKGKVK YPKGSS++VEFGAGDLVTIP+GL+CTWDVSVAV
Sbjct: 34  WGCSPGKYQLKFDAEETCYLLKGKVKAYPKGSSEFVEFGAGDLVTIPRGLNCTWDVSVAV 93

Query: 61  DKYYKFE 67
           DK YKFE
Sbjct: 94  DKCYKFE 100

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225437941|ref|XP_002268868.1| PREDICTED: uncharacterized protein LOC100241271 [Vitis vinifera] gi|297744243|emb|CBI37213.3| unnamed protein product [Vitis vinifera]

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 58/73 (79%), Positives = 62/73 (84%), Gaps = 6/73 (8%)

Query: 1   WGCSPGKFQLKFDAEETCYLLKGKVKVYPKGSSD------WVEFGAGDLVTIPKGLSCTW 54
           WGCSPGK+QLKFDAEETCYLLKGKVK YPKG S        VEFGAGDLV +P+GLSCTW
Sbjct: 31  WGCSPGKYQLKFDAEETCYLLKGKVKAYPKGYSANEDEGCCVEFGAGDLVILPRGLSCTW 90

Query: 55  DVSVAVDKYYKFE 67
           DVSVAVDK+YKFE
Sbjct: 91  DVSVAVDKHYKFE 103

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	74
TAIR|locus:2103095	96	AT3G04300 "AT3G04300" [Arabido	0.905	0.697	0.761	1.5e-26
TAIR|locus:505006531	107	AT4G28703 "AT4G28703" [Arabido	0.891	0.616	0.693	8.7e-24
TAIR|locus:2122734	134	AT4G10300 "AT4G10300" [Arabido	0.905	0.5	0.686	7.8e-23
UNIPROTKB|Q60B25	91	MCA0659 "Putative uncharacteri	0.878	0.714	0.515	8.8e-15
TAIR|locus:2122809	140	AT4G10280 "AT4G10280" [Arabido	0.905	0.478	0.385	5.9e-09
TAIR|locus:2122819	120	AT4G10290 "AT4G10290" [Arabido	0.878	0.541	0.391	5.5e-06
TAIR|locus:2045532	139	PTAC18 "AT2G32180" [Arabidopsi	0.608	0.323	0.425	0.0001
TAIR|locus:2046412	139	AT2G32650 "AT2G32650" [Arabido	0.608	0.323	0.425	0.0001
UNIPROTKB|Q88BC6	121	PSPTO_0091 "Uncharacterized pr	0.851	0.520	0.328	0.00021
UNIPROTKB|Q5LN86	113	SPO3326 "Uncharacterized prote	0.851	0.557	0.312	0.00035

TAIR|locus:2103095 AT3G04300 "AT3G04300" [Arabidopsis thaliana (taxid:3702)]

 Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 51/67 (76%), Positives = 60/67 (89%)

Query:     1 WGCSPGKFQLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAV 60
             W C PGK+ L F+  ETCYL+KGKVKVYPKGSS++VEFGAGDLVTIPKGLSCTWDVS+ +
Sbjct:    25 WSCQPGKYALVFEERETCYLVKGKVKVYPKGSSEFVEFGAGDLVTIPKGLSCTWDVSLFI 84

Query:    61 DKYYKFE 67
             DK+YKF+
Sbjct:    85 DKHYKFD 91

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:505006531 AT4G28703 "AT4G28703" [Arabidopsis thaliana (taxid:3702)]

 Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
 Identities = 52/75 (69%), Positives = 61/75 (81%)

Query:     1 WGCSPGKFQLKFDAEETCYLLKGKVKVYPK----GSSD----W-VEFGAGDLVTIPKGLS 51
             WGCSPGK+ LK++AEE CY+L+GKVKVYPK     SSD    W VEFGAGD+VT PKGLS
Sbjct:    30 WGCSPGKYHLKYEAEEICYILRGKVKVYPKPPPSSSSDAEVEWCVEFGAGDIVTFPKGLS 89

Query:    52 CTWDVSVAVDKYYKF 66
             CTWDVS++VDK+Y F
Sbjct:    90 CTWDVSLSVDKHYIF 104

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2122734 AT4G10300 "AT4G10300" [Arabidopsis thaliana (taxid:3702)]

 Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
 Identities = 46/67 (68%), Positives = 53/67 (79%)

Query:     1 WGCSPGKFQLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAV 60
             WGC P KF   + A+ETCYLL+GKVKVYP GS + VE  AGD V  PKG+SCTWDVSVAV
Sbjct:    68 WGCPPSKFPWTYSAKETCYLLQGKVKVYPNGSDEGVEIEAGDFVVFPKGMSCTWDVSVAV 127

Query:    61 DKYYKFE 67
             DK+Y+FE
Sbjct:   128 DKHYQFE 134

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0009507 "chloroplast" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

UNIPROTKB|Q60B25 MCA0659 "Putative uncharacterized protein" [Methylococcus capsulatus str. Bath (taxid:243233)]

 Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
 Identities = 34/66 (51%), Positives = 41/66 (62%)

Query:     1 WGCSPGKFQLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAV 60
             W C    F   +D  ETCY+L+G+V V P+G    V  G GDLVT P G+SCTWDV V V
Sbjct:    26 WSCGVSSFPWTYDESETCYILEGEVTVTPQGGEP-VRIGKGDLVTFPPGMSCTWDVHVPV 84

Query:    61 DKYYKF 66
              K+Y F
Sbjct:    85 KKHYTF 90

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2122809 AT4G10280 "AT4G10280" [Arabidopsis thaliana (taxid:3702)]

 Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
 Identities = 27/70 (38%), Positives = 37/70 (52%)

Query:     1 WGCSPGKFQLKFDAEETCYLLKGKVKVYPKG---SSDWVEFGAGDLVTIPKGLSCTWDVS 57
             W  +P KF  +F   ET Y ++GKVKV   G     +  E G GD+V  PK +   W+++
Sbjct:    70 WEGAPSKFPWEFKKTETIYFMEGKVKVNVDGYDEEEETFEIGKGDVVVFPKDMKVVWEIT 129

Query:    58 VAVDKYYKFE 67
              AV K Y  E
Sbjct:   130 EAVKKQYSLE 139

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0006661 "phosphatidylinositol biosynthetic process" evidence=RCA

TAIR|locus:2122819 AT4G10290 "AT4G10290" [Arabidopsis thaliana (taxid:3702)]

 Score = 105 (42.0 bits), Expect = 5.5e-06, P = 5.5e-06
 Identities = 27/69 (39%), Positives = 37/69 (53%)

Query:     1 WGCSPGKFQLKFDAEETCYLLKGKVKVYPKG---SSDWVEFGAGDLVTIPKGLSCTWDVS 57
             W   P KF  KF   ET Y ++GK+KV  +      + +EF AGDLV  P+ ++   DV 
Sbjct:    42 WESMPRKFPWKFKKTETMYFVEGKLKVKVEDHHKEGEALEFVAGDLVVFPQDMNVFVDVI 101

Query:    58 VAVDK-YYK 65
               V K YY+
Sbjct:   102 EDVKKRYYR 110

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2045532 PTAC18 "AT2G32180" [Arabidopsis thaliana (taxid:3702)]

 Score = 93 (37.8 bits), Expect = 0.00010, P = 0.00010
 Identities = 20/47 (42%), Positives = 32/47 (68%)

Query:     6 GKFQLKFD--AEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGL 50
             GK +L +D   ++  Y+ +G+V+V P+GS  +++F AGDLV  PK L
Sbjct:    71 GKCKLPWDWQVDQLVYIEQGEVRVVPEGSKRYMQFLAGDLVRYPKWL 117

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009295 "nucleoid" evidence=IDA

GO:0009508 "plastid chromosome" evidence=IDA

TAIR|locus:2046412 AT2G32650 "AT2G32650" [Arabidopsis thaliana (taxid:3702)]

 Score = 93 (37.8 bits), Expect = 0.00010, P = 0.00010
 Identities = 20/47 (42%), Positives = 32/47 (68%)

Query:     6 GKFQLKFD--AEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGL 50
             GK +L +D   ++  Y+ +G+V+V P+GS  +++F AGDLV  PK L
Sbjct:    71 GKCKLPWDWQVDQLVYIEQGEVRVVPEGSKRYMQFLAGDLVRYPKWL 117

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

UNIPROTKB|Q88BC6 PSPTO_0091 "Uncharacterized protein" [Pseudomonas syringae pv. tomato str. DC3000 (taxid:223283)]

 Score = 90 (36.7 bits), Expect = 0.00021, P = 0.00021
 Identities = 21/64 (32%), Positives = 29/64 (45%)

Query:     1 WGCSPGKFQLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAV 60
             W   PG++Q+ +   E C +++G V V            AGD   IP G   TW+V  A 
Sbjct:    51 WNGEPGQWQVNYTEHEYCEIVQG-VSVLRDEQGTAKTLRAGDRFVIPAGFKGTWEVLEAC 109

Query:    61 DKYY 64
              K Y
Sbjct:   110 RKIY 113

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5LN86 SPO3326 "Uncharacterized protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 88 (36.0 bits), Expect = 0.00035, P = 0.00035
 Identities = 20/64 (31%), Positives = 29/64 (45%)

Query:     1 WGCSPGKFQLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAV 60
             W  +PGK+++ +D  E C +L G   V        +   AGD   +  G S TW+V    
Sbjct:    47 WRSTPGKWRVSYDEWEYCRILSGH-SVLTDAEGTEITLRAGDSFILRPGFSGTWEVIETT 105

Query:    61 DKYY 64
              K Y
Sbjct:   106 TKDY 109

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pg.C_LG_II2525	hypothetical protein (109 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.I.1555.1	hypothetical protein (409 aa)	•						•		0.446
	gw1.II.3029.1	hypothetical protein; Exchanges the guanine residue with 7-aminomethyl-7- deazaguanine in tRNAs [...] (392 aa)	•								0.445

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	74
pfam05899	74	pfam05899, Cupin_3, Protein of unknown function (D	1e-22
COG3450	116	COG3450, COG3450, Predicted enzyme of the cupin su	3e-15
pfam07883	70	pfam07883, Cupin_2, Cupin domain	0.001

>gnl|CDD|147835 pfam05899, Cupin_3, Protein of unknown function (DUF861)

 Score = 81.5 bits (202), Expect = 1e-22
 Identities = 30/64 (46%), Positives = 41/64 (64%), Gaps = 1/64 (1%)

Query: 1  WGCSPGKFQLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAV 60
          W C+PGKF+  ++ +E CY+L G+V V P+G    VE  AGDLV  P G + TW+V   V
Sbjct: 12 WECTPGKFRWTYEEDEFCYILSGEVTVTPEGGET-VELRAGDLVVFPAGFTGTWEVLETV 70

Query: 61 DKYY 64
           K+Y
Sbjct: 71 RKHY 74

This family consists of several proteins which seem to be specific to plants and bacteria. The function of this family is unknown. Length = 74

>gnl|CDD|225981 COG3450, COG3450, Predicted enzyme of the cupin superfamily [General function prediction only]

 Score = 64.3 bits (157), Expect = 3e-15
 Identities = 28/64 (43%), Positives = 40/64 (62%), Gaps = 1/64 (1%)

Query: 1   WGCSPGKFQLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAV 60
           W C+PGKF++ +D +E C++L+G+V+V P G    VE  AGD    P G   TW+V   V
Sbjct: 50  WECTPGKFRVTYDEDEFCHILEGRVEVTPDGGEP-VEVRAGDSFVFPAGFKGTWEVLETV 108

Query: 61  DKYY 64
            K+Y
Sbjct: 109 RKHY 112

Length = 116

>gnl|CDD|219618 pfam07883, Cupin_2, Cupin domain

 Score = 33.0 bits (76), Expect = 0.001
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)

Query: 15 EETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKG 49
          EE  Y+L+G+ ++   G  + V   AGD V  P G
Sbjct: 19 EEFFYVLEGEGELTVDG--EEVVLKAGDSVYFPAG 51

This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). Length = 70

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	74
COG3450	116	Predicted enzyme of the cupin superfamily [General	99.93
PF05899	74	Cupin_3: Protein of unknown function (DUF861); Int	99.9
PF06249	152	EutQ: Ethanolamine utilisation protein EutQ; Inter	99.5
PRK15457	233	ethanolamine utilization protein EutQ; Provisional	99.33
COG4766	176	EutQ Ethanolamine utilization protein [Amino acid	99.31
PF07883	71	Cupin_2: Cupin domain; InterPro: IPR013096 This fa	99.2
COG0662	127	{ManC} Mannose-6-phosphate isomerase [Carbohydrate	99.09
COG3837	161	Uncharacterized conserved protein, contains double	99.08
PRK13290	125	ectC L-ectoine synthase; Reviewed	99.03
PF06865	94	DUF1255: Protein of unknown function (DUF1255); In	98.95
PRK10579	94	hypothetical protein; Provisional	98.94
PF02311	136	AraC_binding: AraC-like ligand binding domain; Int	98.88
PF00190	144	Cupin_1: Cupin; InterPro: IPR006045 This family re	98.86
PRK09943	185	DNA-binding transcriptional repressor PuuR; Provis	98.84
PRK13264	177	3-hydroxyanthranilate 3,4-dioxygenase; Provisional	98.75
COG1917	131	Uncharacterized conserved protein, contains double	98.74
TIGR03214	260	ura-cupin putative allantoin catabolism protein. T	98.73
smart00835	146	Cupin_1 Cupin. This family represents the conserve	98.71
TIGR03037	159	anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase	98.7
TIGR03404	367	bicupin_oxalic bicupin, oxalate decarboxylase fami	98.66
PRK04190	191	glucose-6-phosphate isomerase; Provisional	98.65
PRK11171	266	hypothetical protein; Provisional	98.59
TIGR01479	468	GMP_PMI mannose-1-phosphate guanylyltransferase/ma	98.57
TIGR03214	260	ura-cupin putative allantoin catabolism protein. T	98.55
PRK11171	266	hypothetical protein; Provisional	98.53
PRK15460	478	cpsB mannose-1-phosphate guanyltransferase; Provis	98.53
PF01050	151	MannoseP_isomer: Mannose-6-phosphate isomerase; In	98.47
COG3123	94	Uncharacterized protein conserved in bacteria [Fun	98.46
TIGR03404	367	bicupin_oxalic bicupin, oxalate decarboxylase fami	98.42
PF12852	186	Cupin_6: Cupin	98.41
PRK13502	282	transcriptional activator RhaR; Provisional	98.34
PRK13501	290	transcriptional activator RhaR; Provisional	98.29
PRK13500	312	transcriptional activator RhaR; Provisional	98.23
COG2140	209	Thermophilic glucose-6-phosphate isomerase and rel	98.22
PF03079	157	ARD: ARD/ARD' family; InterPro: IPR004313 The two	98.21
PF04209	424	HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR	98.15
PRK10296	278	DNA-binding transcriptional regulator ChbR; Provis	98.12
PRK10371	302	DNA-binding transcriptional regulator MelR; Provis	98.09
PRK13503	278	transcriptional activator RhaS; Provisional	98.02
TIGR02297	287	HpaA 4-hydroxyphenylacetate catabolism regulatory	98.01
COG1791	181	Uncharacterized conserved protein, contains double	97.98
PF12973	91	Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_	97.96
PRK05341	438	homogentisate 1,2-dioxygenase; Provisional	97.96
PF06339	126	Ectoine_synth: Ectoine synthase; InterPro: IPR0104	97.91
TIGR01015	429	hmgA homogentisate 1,2-dioxygenase. Missing in hum	97.87
PF11699	85	CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.	97.86
PLN02658	435	homogentisate 1,2-dioxygenase	97.84
PF06052	151	3-HAO: 3-hydroxyanthranilic acid dioxygenase; Inte	97.8
TIGR02272	335	gentisate_1_2 gentisate 1,2-dioxygenase. This fami	97.8
COG4101	142	Predicted mannose-6-phosphate isomerase [Carbohydr	97.76
COG4297	163	Uncharacterized protein containing double-stranded	97.76
PF06560	182	GPI: Glucose-6-phosphate isomerase (GPI); InterPro	97.75
KOG2107	179	consensus Uncharacterized conserved protein, conta	97.74
COG3257	264	GlxB Uncharacterized protein, possibly involved in	97.59
PLN00212	493	glutelin; Provisional	97.56
PLN00212	493	glutelin; Provisional	97.54
COG3508	427	HmgA Homogentisate 1,2-dioxygenase [Secondary meta	97.45
PF02041	167	Auxin_BP: Auxin binding protein; InterPro: IPR0005	97.29
PRK10572	290	DNA-binding transcriptional regulator AraC; Provis	97.29
PF14525	172	AraC_binding_2: AraC-binding-like domain	97.26
TIGR02451	215	anti_sig_ChrR anti-sigma factor, putative, ChrR fa	97.2
PF05523	131	FdtA: WxcM-like, C-terminal ; InterPro: IPR008894	97.18
PRK09685	302	DNA-binding transcriptional activator FeaR; Provis	97.17
TIGR02272	335	gentisate_1_2 gentisate 1,2-dioxygenase. This fami	97.08
TIGR00218	302	manA mannose-6-phosphate isomerase, class I. The n	97.04
KOG2757	411	consensus Mannose-6-phosphate isomerase [Carbohydr	96.98
PF11142	63	DUF2917: Protein of unknown function (DUF2917); In	96.85
PRK15131	389	mannose-6-phosphate isomerase; Provisional	96.81
PRK00924	276	5-keto-4-deoxyuronate isomerase; Provisional	96.8
COG3435	351	Gentisate 1,2-dioxygenase [Secondary metabolites b	96.49
PF04962	261	KduI: KduI/IolB family; InterPro: IPR021120 The Kd	96.39
COG3257	264	GlxB Uncharacterized protein, possibly involved in	96.34
PLN02288	394	mannose-6-phosphate isomerase	96.23
PF13621	251	Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XU	96.11
COG1482	312	ManA Phosphomannose isomerase [Carbohydrate transp	96.08
COG3435	351	Gentisate 1,2-dioxygenase [Secondary metabolites b	95.94
KOG0501	971	consensus K+-channel KCNQ [Inorganic ion transport	95.47
PF02678	107	Pirin: Pirin; InterPro: IPR003829 This entry repre	94.77
PF05962	184	HutD: HutD; InterPro: IPR010282 This entry contain	94.74
PF05726	104	Pirin_C: Pirin C-terminal cupin domain; InterPro:	94.59
PRK15186	291	AraC family transcriptional regulator; Provisional	94.55
PF04622	216	ERG2_Sigma1R: ERG2 and Sigma1 receptor like protei	94.53
PF06719	155	AraC_N: AraC-type transcriptional regulator N-term	94.23
PF08007	319	Cupin_4: Cupin superfamily protein; InterPro: IPR0	94.09
PRK10202	149	ebgC cryptic beta-D-galactosidase subunit beta; Re	93.35
PF14499	251	DUF4437: Domain of unknown function (DUF4437); PDB	93.25
PF09313	82	DUF1971: Domain of unknown function (DUF1971); Int	92.71
KOG1417	446	consensus Homogentisate 1,2-dioxygenase [Amino aci	92.27
PRK11396	191	hypothetical protein; Provisional	91.67
TIGR01221	176	rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This en	91.43
KOG3995	279	consensus 3-hydroxyanthranilate oxygenase HAAO [Am	91.23
PF02373	114	JmjC: JmjC domain, hydroxylase; InterPro: IPR01312	91.03
PF00908	176	dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimer	89.93
COG1741	276	Pirin-related protein [General function prediction	89.42
COG2731	154	EbgC Beta-galactosidase, beta subunit [Carbohydrat	89.41
PF07385	225	DUF1498: Protein of unknown function (DUF1498); In	89.38
COG3717	278	KduI 5-keto 4-deoxyuronate isomerase [Carbohydrate	89.36
PHA02984	286	hypothetical protein; Provisional	88.62
PF05962	184	HutD: HutD; InterPro: IPR010282 This entry contain	88.36
PRK15044	295	transcriptional regulator SirC; Provisional	88.29
TIGR00218	302	manA mannose-6-phosphate isomerase, class I. The n	87.74
COG1482	312	ManA Phosphomannose isomerase [Carbohydrate transp	87.36
KOG0498	727	consensus K+-channel ERG and related proteins, con	87.03
PF00027	91	cNMP_binding: Cyclic nucleotide-binding domain; In	86.88
COG3718	270	IolB Uncharacterized enzyme involved in inositol m	85.01
PRK15131	389	mannose-6-phosphate isomerase; Provisional	84.79
PF04074	153	DUF386: Domain of unknown function (DUF386); Inter	83.98
PRK00364	95	groES co-chaperonin GroES; Reviewed	83.95
KOG3706	629	consensus Uncharacterized conserved protein [Funct	83.94
PHA02890	278	hypothetical protein; Provisional	83.45
PRK13918	202	CRP/FNR family transcriptional regulator; Provisio	83.35
cd00320	93	cpn10 Chaperonin 10 Kd subunit (cpn10 or GroES); C	81.75
COG3097	106	Uncharacterized protein conserved in bacteria [Fun	81.57
PRK04980	102	hypothetical protein; Provisional	80.03

>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]

Probab=99.93  E-value=6.5e-26  Score=140.23  Aligned_cols=66  Identities=42%  Similarity=0.895  Sum_probs=64.6

Q ss_pred             CCcCCceEEEecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEEEe
Q 037642            1 WGCSPGKFQLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFE   67 (74)
Q Consensus         1 W~~~pg~~~~~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~~   67 (74)
                      |+|+||+|++.++.+|+|+||+|+++++.++| +.++++|||+++||+|++++|+|.+++||+|++.
T Consensus        50 We~TpG~~r~~y~~~E~chil~G~v~~T~d~G-e~v~~~aGD~~~~~~G~~g~W~V~EtvrK~Yv~~  115 (116)
T COG3450          50 WECTPGKFRVTYDEDEFCHILEGRVEVTPDGG-EPVEVRAGDSFVFPAGFKGTWEVLETVRKHYVIR  115 (116)
T ss_pred             EEecCccceEEcccceEEEEEeeEEEEECCCC-eEEEEcCCCEEEECCCCeEEEEEeeeeEEEEEEe
Confidence            99999999999999999999999999999999 7999999999999999999999999999999985

>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown

Probab=99.90  E-value=1.6e-23  Score=120.35  Aligned_cols=63  Identities=40%  Similarity=0.831  Sum_probs=60.2

Q ss_pred             CCcCCceEEEecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEE
Q 037642            1 WGCSPGKFQLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYY   64 (74)
Q Consensus         1 W~~~pg~~~~~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y   64 (74)
                      |+|+||.+.+.++.+|++|||+|+++|+.++| ++++++|||+++||+|+.++|++.+++||+|
T Consensus        12 w~~~pg~~~~~~~~~E~~~vleG~v~it~~~G-~~~~~~aGD~~~~p~G~~~~w~v~~~vrK~Y   74 (74)
T PF05899_consen   12 WECTPGKFPWPYPEDEFFYVLEGEVTITDEDG-ETVTFKAGDAFFLPKGWTGTWEVREPVRKVY   74 (74)
T ss_dssp             EEEECEEEEEEESSEEEEEEEEEEEEEEETTT-EEEEEETTEEEEE-TTEEEEEEEEEEEEEEE
T ss_pred             EEECCceeEeeCCCCEEEEEEEeEEEEEECCC-CEEEEcCCcEEEECCCCEEEEEECeEEEEcC
Confidence            89999999999999999999999999999998 6899999999999999999999999999998

They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.

>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine

Probab=99.50  E-value=4.4e-13  Score=86.36  Aligned_cols=63  Identities=24%  Similarity=0.395  Sum_probs=54.0

Q ss_pred             CceEEEecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEEEecC
Q 037642            5 PGKFQLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFEST   69 (74)
Q Consensus         5 pg~~~~~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~~~~   69 (74)
                      ++.|.|.++++|+.|||||+..+.++|  +++..+|||+++||+|.+.+|.+....|.+|+.+-.
T Consensus        86 ~~~f~wtl~YDEi~~VlEG~L~i~~~G--~~~~A~~GDvi~iPkGs~I~fst~~~a~~~Yv~yPa  148 (152)
T PF06249_consen   86 KTSFPWTLTYDEIKYVLEGTLEISIDG--QTVTAKPGDVIFIPKGSTITFSTPDYARFFYVTYPA  148 (152)
T ss_dssp             EEEEEEE-SSEEEEEEEEEEEEEEETT--EEEEEETT-EEEE-TT-EEEEEEEEEEEEEEEEEST
T ss_pred             CCCccEEeecceEEEEEEeEEEEEECC--EEEEEcCCcEEEECCCCEEEEecCCCEEEEEEECCC
Confidence            456889999999999999999999886  589999999999999999999999999999998754

The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.

>PRK15457 ethanolamine utilization protein EutQ; Provisional

Probab=99.33  E-value=1.2e-11  Score=84.20  Aligned_cols=61  Identities=26%  Similarity=0.360  Sum_probs=54.9

Q ss_pred             CceEEEecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEEEe
Q 037642            5 PGKFQLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFE   67 (74)
Q Consensus         5 pg~~~~~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~~   67 (74)
                      ...|.|+++++|+.|||+|++++++++  +++.++|||+++||+|..+.|......|.+|++.
T Consensus       166 ~~sf~wtl~~dEi~YVLEGe~~l~IdG--~t~~l~pGDvlfIPkGs~~hf~tp~~aRflyV~~  226 (233)
T PRK15457        166 NAFFPWTLNYDEIDMVLEGELHVRHEG--ETMIAKAGDVMFIPKGSSIEFGTPSSVRFLYVAW  226 (233)
T ss_pred             cCccceeccceEEEEEEEeEEEEEECC--EEEEeCCCcEEEECCCCeEEecCCCCeeEEEEEe
Confidence            356789999999999999999999987  5899999999999999999998888888888764

>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.31  E-value=1.3e-11  Score=79.76  Aligned_cols=64  Identities=28%  Similarity=0.425  Sum_probs=57.7

Q ss_pred             CCceEEEecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEEEecC
Q 037642            4 SPGKFQLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFEST   69 (74)
Q Consensus         4 ~pg~~~~~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~~~~   69 (74)
                      +|..|.|..++||+.|||||+..+.++|+  +...+|||+++||+|...++.+.+..+-.|+.+--
T Consensus       108 ~~~tf~wtl~yDe~d~VlEGrL~V~~~g~--tv~a~aGDvifiPKgssIefst~gea~flyvtyPa  171 (176)
T COG4766         108 KNTTFPWTLNYDEIDYVLEGRLHVRIDGR--TVIAGAGDVIFIPKGSSIEFSTTGEAKFLYVTYPA  171 (176)
T ss_pred             ccccCcceecccceeEEEeeeEEEEEcCC--eEecCCCcEEEecCCCeEEEeccceEEEEEEEccc
Confidence            45667888889999999999999999995  69999999999999999999999999999986643

>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel)

Probab=99.20  E-value=3.3e-10  Score=62.54  Aligned_cols=61  Identities=23%  Similarity=0.334  Sum_probs=48.6

Q ss_pred             cCCceE---EEecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEE
Q 037642            3 CSPGKF---QLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYK   65 (74)
Q Consensus         3 ~~pg~~---~~~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~   65 (74)
                      -+||..   +.|...+|+++||+|++++..++  +.+.+++||++++|+|..+.+...+.-...|+
T Consensus         5 ~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~~~--~~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l   68 (71)
T PF07883_consen    5 LPPGGSIPPHRHPGEDEFFYVLSGEGTLTVDG--ERVELKPGDAIYIPPGVPHQVRNPGDEPARFL   68 (71)
T ss_dssp             EETTEEEEEEEESSEEEEEEEEESEEEEEETT--EEEEEETTEEEEEETTSEEEEEEESSSEEEEE
T ss_pred             ECCCCCCCCEECCCCCEEEEEEECCEEEEEcc--EEeEccCCEEEEECCCCeEEEEECCCCCEEEE
Confidence            456663   34444559999999999999887  57999999999999999999998875444443

; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....

>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]

Probab=99.09  E-value=1.4e-09  Score=67.53  Aligned_cols=61  Identities=28%  Similarity=0.348  Sum_probs=50.4

Q ss_pred             eEEEecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEE-EEEEEecC
Q 037642            7 KFQLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVD-KYYKFEST   69 (74)
Q Consensus         7 ~~~~~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~-k~y~~~~~   69 (74)
                      .++.|...+|+++||+|++.+.+++  +...+++||++++|+|..|...-.+... +++.+.++
T Consensus        50 ~~~~H~~~dE~~~Vl~G~g~v~~~~--~~~~v~~gd~~~iP~g~~H~~~N~G~~~L~liei~~p  111 (127)
T COG0662          50 SLHHHHHRDEHWYVLEGTGKVTIGG--EEVEVKAGDSVYIPAGTPHRVRNTGKIPLVLIEVQSP  111 (127)
T ss_pred             CcccccCcceEEEEEeeEEEEEECC--EEEEecCCCEEEECCCCcEEEEcCCCcceEEEEEecC
Confidence            3567777899999999999999998  5799999999999999999999887743 33334444

>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=99.08  E-value=7.5e-10  Score=71.67  Aligned_cols=62  Identities=21%  Similarity=0.234  Sum_probs=51.1

Q ss_pred             CCceE----EEecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCC--CeEEEEEeeeEEEEEEEe
Q 037642            4 SPGKF----QLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKG--LSCTWDVSVAVDKYYKFE   67 (74)
Q Consensus         4 ~pg~~----~~~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g--~~~~~~~~~~~~k~y~~~   67 (74)
                      +||.+    ++|..++|++|||||+.++..+++  ...|+|||++-||+|  .-|.+.-...+...|+.-
T Consensus        50 ~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~d~~--e~~lrpGD~~gFpAG~~~aHhliN~s~~~~~yL~v  117 (161)
T COG3837          50 EPGGESSLRHWHSAEDEFVYILEGEGTLREDGG--ETRLRPGDSAGFPAGVGNAHHLINRSDVILRYLEV  117 (161)
T ss_pred             CCCCccccccccccCceEEEEEcCceEEEECCe--eEEecCCceeeccCCCcceeEEeecCCceEEEEEe
Confidence            56664    678889999999999999999997  489999999999999  666666666666666643

>PRK13290 ectC L-ectoine synthase; Reviewed

Probab=99.03  E-value=4.6e-09  Score=65.56  Aligned_cols=53  Identities=13%  Similarity=0.117  Sum_probs=45.4

Q ss_pred             ceEEEEEEecEEEEE-eCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEEEe
Q 037642           14 AEETCYLLKGKVKVY-PKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFE   67 (74)
Q Consensus        14 ~~E~~~vleG~~~~~-~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~~   67 (74)
                      ..|++|||+|++++. ++++ +.+.++|||.++||++.+|.|...++++-+.++.
T Consensus        55 ~~E~~yVL~G~~~~~~i~~g-~~~~L~aGD~i~~~~~~~H~~~N~e~~~~l~v~t  108 (125)
T PRK13290         55 HLEAVYCIEGEGEVEDLATG-EVHPIRPGTMYALDKHDRHYLRAGEDMRLVCVFN  108 (125)
T ss_pred             CEEEEEEEeCEEEEEEcCCC-EEEEeCCCeEEEECCCCcEEEEcCCCEEEEEEEC
Confidence            469999999999999 7644 5799999999999999999999888776555554

>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length

Probab=98.95  E-value=1.2e-08  Score=61.14  Aligned_cols=61  Identities=23%  Similarity=0.451  Sum_probs=49.6

Q ss_pred             CCceEEEecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEEE
Q 037642            4 SPGKFQLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKF   66 (74)
Q Consensus         4 ~pg~~~~~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~   66 (74)
                      .||.|.+.+...|++-|++|.+++.+.+..+..++.+|+.|.+|++.+...++.+..  -|++
T Consensus        31 ~pGeY~F~T~~~E~M~vvsG~l~V~lpg~~ew~~~~aGesF~VpanssF~v~v~~~~--~Y~C   91 (94)
T PF06865_consen   31 LPGEYTFGTSAPERMEVVSGELEVKLPGEDEWQTYSAGESFEVPANSSFDVKVKEPT--AYLC   91 (94)
T ss_dssp             -SECEEEEESS-EEEEEEESEEEEEETT-SS-EEEETT-EEEE-TTEEEEEEESS-E--EEEE
T ss_pred             eeeEEEEcCCCCEEEEEEEeEEEEEcCCCcccEEeCCCCeEEECCCCeEEEEECcce--eeEE
Confidence            489999999999999999999999999987789999999999999999999999864  4544

The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.

>PRK10579 hypothetical protein; Provisional

Probab=98.94  E-value=1.8e-08  Score=60.45  Aligned_cols=61  Identities=20%  Similarity=0.447  Sum_probs=55.1

Q ss_pred             CCceEEEecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEEE
Q 037642            4 SPGKFQLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKF   66 (74)
Q Consensus         4 ~pg~~~~~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~   66 (74)
                      .||.|.+.+...|++-|++|.+++.+.+..+...+++|+.|.+|++.+...++.+..  -|++
T Consensus        31 ~pGey~F~T~~~E~MeivsG~l~V~Lpg~~ew~~~~aG~sF~VpanssF~l~v~~~t--~Y~C   91 (94)
T PRK10579         31 AEGEYTFSTAEPEEMTVISGALNVLLPGATDWQVYEAGEVFNVPGHSEFHLQVAEPT--SYLC   91 (94)
T ss_pred             eeeEEEEcCCCcEEEEEEeeEEEEECCCCcccEEeCCCCEEEECCCCeEEEEECcce--eeEE
Confidence            489999999999999999999999999987789999999999999999999998864  4554

>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC

Probab=98.88  E-value=7e-08  Score=57.55  Aligned_cols=58  Identities=24%  Similarity=0.370  Sum_probs=42.5

Q ss_pred             EEEe-cCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEee--eEEEEEEEe
Q 037642            8 FQLK-FDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSV--AVDKYYKFE   67 (74)
Q Consensus         8 ~~~~-~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~--~~~k~y~~~   67 (74)
                      +..| .+..+++||++|++++.+++  +.+.++|||+++||+|..+.+....  +....++.-
T Consensus        16 ~~~h~h~~~~i~~v~~G~~~~~~~~--~~~~l~~g~~~li~p~~~H~~~~~~~~~~~~~~i~~   76 (136)
T PF02311_consen   16 FPPHWHDFYEIIYVLSGEGTLHIDG--QEYPLKPGDLFLIPPGQPHSYYPDSNEPWEYYWIYF   76 (136)
T ss_dssp             EEEETT-SEEEEEEEEE-EEEEETT--EEEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEEEEE
T ss_pred             cCCEECCCEEEEEEeCCEEEEEECC--EEEEEECCEEEEecCCccEEEecCCCCCEEEEEEEE
Confidence            3344 56899999999999999999  4799999999999999999999999  665555543

The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.

>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel)

Probab=98.86  E-value=5.5e-08  Score=61.07  Aligned_cols=67  Identities=21%  Similarity=0.338  Sum_probs=50.4

Q ss_pred             CCceE---EEecCceEEEEEEecEEEEEe--CCC------ceEEE--ECCCcEEEEcCCCeEEEEEe--eeEEEEEEEec
Q 037642            4 SPGKF---QLKFDAEETCYLLKGKVKVYP--KGS------SDWVE--FGAGDLVTIPKGLSCTWDVS--VAVDKYYKFES   68 (74)
Q Consensus         4 ~pg~~---~~~~~~~E~~~vleG~~~~~~--~~g------~e~~~--~~~GD~v~~p~g~~~~~~~~--~~~~k~y~~~~   68 (74)
                      +||..   +|| +..|++||++|++++.+  .++      .....  +++||+++||+|..+.+.-.  .+...++++..
T Consensus        42 ~pg~~~~Ph~h-~a~~i~~V~~G~~~~~~v~~~~~~~~~~~~~~~v~l~~Gdv~~vP~G~~h~~~n~~~~~~~~~~~f~~  120 (144)
T PF00190_consen   42 EPGGLRAPHYH-NADEIVYVIEGRGRVGVVGPGGPQEEFRDFSQKVRLKAGDVFVVPAGHPHWIINDGDDEALVLIIFDT  120 (144)
T ss_dssp             ETTEEEEEEEE-SSEEEEEEEESEEEEEEEETTCSSSEEEEEEEEEEEETTEEEEE-TT-EEEEEECSSSSEEEEEEEEE
T ss_pred             hcCCccceeEe-eeeEEeeeeccceEEEEEecCCccccceeeeceeeeecccceeeccceeEEEEcCCCCCCEEEEEEEC
Confidence            56765   678 99999999999999654  221      12344  99999999999999999999  57777777776


Q ss_pred             CCC
Q 037642           69 TSS   71 (74)
Q Consensus        69 ~~~   71 (74)
                      .+.
T Consensus       121 ~~~  123 (144)
T PF00190_consen  121 NNP  123 (144)
T ss_dssp             SST
T ss_pred             CCC
Confidence            554

This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....

>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional

Probab=98.84  E-value=3.1e-08  Score=64.50  Aligned_cols=47  Identities=23%  Similarity=0.336  Sum_probs=42.5

Q ss_pred             ecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeee
Q 037642           11 KFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVA   59 (74)
Q Consensus        11 ~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~   59 (74)
                      +.+..|++|||+|++++.+++  +.+.+++||.++||++..|.|...+.
T Consensus       125 ~h~~~E~~~Vl~G~~~~~~~~--~~~~l~~Gd~~~~~~~~~H~~~n~~~  171 (185)
T PRK09943        125 KHQGEEIGTVLEGEIVLTING--QDYHLVAGQSYAINTGIPHSFSNTSA  171 (185)
T ss_pred             ccCCcEEEEEEEeEEEEEECC--EEEEecCCCEEEEcCCCCeeeeCCCC
Confidence            456789999999999999988  57999999999999999999998654

>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional

Probab=98.75  E-value=3.8e-08  Score=64.84  Aligned_cols=57  Identities=16%  Similarity=0.304  Sum_probs=45.7

Q ss_pred             CCc-eEEEec-CceEEEEEEecEEEEEeCCCc--eEEEECCCcEEEEcCCCeEEEEEeeeE
Q 037642            4 SPG-KFQLKF-DAEETCYLLKGKVKVYPKGSS--DWVEFGAGDLVTIPKGLSCTWDVSVAV   60 (74)
Q Consensus         4 ~pg-~~~~~~-~~~E~~~vleG~~~~~~~~g~--e~~~~~~GD~v~~p~g~~~~~~~~~~~   60 (74)
                      -|| ...||. +.+|++|+|+|.+.|.+.+++  +.+.|++||++++|+|.+|.+.-.+..
T Consensus        42 Gpn~r~d~H~~~tdE~FyqleG~~~l~v~d~g~~~~v~L~eGd~fllP~gvpHsP~r~~~t  102 (177)
T PRK13264         42 GPNARTDFHYDPGEEFFYQLEGDMYLKVQEDGKRRDVPIREGEMFLLPPHVPHSPQREAGS  102 (177)
T ss_pred             cCCcccccccCCCceEEEEECCeEEEEEEcCCceeeEEECCCCEEEeCCCCCcCCccCCCe
Confidence            356 355665 469999999999999994321  379999999999999999999876554

>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=98.74  E-value=7.1e-08  Score=59.51  Aligned_cols=55  Identities=29%  Similarity=0.459  Sum_probs=45.6

Q ss_pred             CCceE-EEec-C-ceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeE
Q 037642            4 SPGKF-QLKF-D-AEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAV   60 (74)
Q Consensus         4 ~pg~~-~~~~-~-~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~   60 (74)
                      +||.. .+|. + .++..|||+|.+++..++  +.+.+++||++++|+|..|.+...+..
T Consensus        51 ~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~g--~~~~l~~Gd~i~ip~g~~H~~~a~~~~  108 (131)
T COG1917          51 EPGAVIPWHTHPLGEQTIYVLEGEGTVQLEG--EKKELKAGDVIIIPPGVVHGLKAVEDE  108 (131)
T ss_pred             CCCcccccccCCCcceEEEEEecEEEEEecC--CceEecCCCEEEECCCCeeeeccCCCC
Confidence            34543 3443 3 679999999999999994  579999999999999999999887765

>TIGR03214 ura-cupin putative allantoin catabolism protein

Probab=98.73  E-value=1e-07  Score=65.51  Aligned_cols=64  Identities=20%  Similarity=0.214  Sum_probs=52.9

Q ss_pred             CCceEE---EecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEEEecC
Q 037642            4 SPGKFQ---LKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFEST   69 (74)
Q Consensus         4 ~pg~~~---~~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~~~~   69 (74)
                      +||...   .+...+|..|||+|++.+.+++  +...+++||+++||++.++.....+.-.-.|++++.
T Consensus       187 ~PG~~~~~~~~H~~eh~~yiL~G~G~~~~~g--~~~~V~~GD~i~i~~~~~h~~~~~G~~~~~~l~ykd  253 (260)
T TIGR03214       187 EPGASHPYIETHVMEHGLYVLEGKGVYNLDN--NWVPVEAGDYIWMGAYCPQACYAGGRGEFRYLLYKD  253 (260)
T ss_pred             CCCcccCCcccccceeEEEEEeceEEEEECC--EEEEecCCCEEEECCCCCEEEEecCCCcEEEEEEcc
Confidence            466642   3445678999999999999998  589999999999999999999998776677777653

This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).

>smart00835 Cupin_1 Cupin

Probab=98.71  E-value=9.2e-08  Score=60.19  Aligned_cols=55  Identities=22%  Similarity=0.280  Sum_probs=43.5

Q ss_pred             CCceE---EEecCceEEEEEEecEEEEEeCCCc----eEEEECCCcEEEEcCCCeEEEEEee
Q 037642            4 SPGKF---QLKFDAEETCYLLKGKVKVYPKGSS----DWVEFGAGDLVTIPKGLSCTWDVSV   58 (74)
Q Consensus         4 ~pg~~---~~~~~~~E~~~vleG~~~~~~~~g~----e~~~~~~GD~v~~p~g~~~~~~~~~   58 (74)
                      +||..   ++|....|++|||+|++++.+.+..    ....+++||+++||+|..|.+...+
T Consensus        38 ~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~~ip~g~~H~~~n~~   99 (146)
T smart00835       38 EPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREGDVFVVPQGHPHFQVNSG   99 (146)
T ss_pred             cCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEEEECCCCEEEEEcCC
Confidence            45553   3454578999999999999986631    1688999999999999999998754

This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.

>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase

Probab=98.70  E-value=5.4e-08  Score=63.21  Aligned_cols=53  Identities=19%  Similarity=0.236  Sum_probs=43.5

Q ss_pred             EEEec-CceEEEEEEecEEEEEeCCCc--eEEEECCCcEEEEcCCCeEEEEEeeeE
Q 037642            8 FQLKF-DAEETCYLLKGKVKVYPKGSS--DWVEFGAGDLVTIPKGLSCTWDVSVAV   60 (74)
Q Consensus         8 ~~~~~-~~~E~~~vleG~~~~~~~~g~--e~~~~~~GD~v~~p~g~~~~~~~~~~~   60 (74)
                      +.||. +.+|++|+|+|++.|.+.+++  +.+.|++||++++|+|.+|.+.-.+..
T Consensus        41 ~d~H~~~tdE~FyqleG~~~l~v~d~g~~~~v~L~eGd~flvP~gvpHsP~r~~~t   96 (159)
T TIGR03037        41 TDFHDDPGEEFFYQLKGEMYLKVTEEGKREDVPIREGDIFLLPPHVPHSPQRPAGS   96 (159)
T ss_pred             cccccCCCceEEEEEcceEEEEEEcCCcEEEEEECCCCEEEeCCCCCcccccCCCc
Confidence            34665 479999999999999775532  279999999999999999999876654

Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.

>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family

Probab=98.66  E-value=1.8e-07  Score=67.27  Aligned_cols=65  Identities=15%  Similarity=0.309  Sum_probs=49.3

Q ss_pred             CCceE---EEecCceEEEEEEecEEEEEeCC---CceEEEECCCcEEEEcCCCeEEEEEeee-EEEEEEEec
Q 037642            4 SPGKF---QLKFDAEETCYLLKGKVKVYPKG---SSDWVEFGAGDLVTIPKGLSCTWDVSVA-VDKYYKFES   68 (74)
Q Consensus         4 ~pg~~---~~~~~~~E~~~vleG~~~~~~~~---g~e~~~~~~GD~v~~p~g~~~~~~~~~~-~~k~y~~~~   68 (74)
                      +||..   ++|...+|++|||+|++++++.+   ..++..+++||+++||+|..|..+-.+. -.+++.+..
T Consensus       253 ~PG~~~~~H~H~~~~E~~yvl~G~~~~~v~d~~g~~~~~~l~~GD~~~iP~g~~H~i~N~G~e~l~fL~if~  324 (367)
T TIGR03404       253 EPGAMRELHWHPNADEWQYFIQGQARMTVFAAGGNARTFDYQAGDVGYVPRNMGHYVENTGDETLVFLEVFK  324 (367)
T ss_pred             CCCCccCCeeCcCCCeEEEEEEEEEEEEEEecCCcEEEEEECCCCEEEECCCCeEEEEECCCCCEEEEEEEC
Confidence            45653   67788899999999999999742   1257899999999999999999986653 234444433

Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.

>PRK04190 glucose-6-phosphate isomerase; Provisional

Probab=98.65  E-value=3.1e-07  Score=61.05  Aligned_cols=59  Identities=20%  Similarity=0.264  Sum_probs=44.3

Q ss_pred             EEec--CceEEEEEEecEEEEEeCCCc---eEEEECCCcEEEEcCCCeEEEEEee--eEEEEEEEe
Q 037642            9 QLKF--DAEETCYLLKGKVKVYPKGSS---DWVEFGAGDLVTIPKGLSCTWDVSV--AVDKYYKFE   67 (74)
Q Consensus         9 ~~~~--~~~E~~~vleG~~~~~~~~g~---e~~~~~~GD~v~~p~g~~~~~~~~~--~~~k~y~~~   67 (74)
                      ++|.  +..|++|||+|++.+.+++..   ....++|||+++||+|..|...-.+  +++.+.++.
T Consensus        90 H~H~~~~~~EiyyvlsG~g~~~l~~~~G~~~~~~v~pGd~v~IPpg~~H~~iN~G~epl~fl~v~p  155 (191)
T PRK04190         90 HFHAKADRAEIYYGLKGKGLMLLQDPEGEARWIEMEPGTVVYVPPYWAHRSVNTGDEPLVFLACYP  155 (191)
T ss_pred             eEcCCCCCCEEEEEEeCEEEEEEecCCCcEEEEEECCCCEEEECCCCcEEeEECCCCCEEEEEEEc
Confidence            3454  557999999999999986531   2589999999999999999887644  454444333

>PRK11171 hypothetical protein; Provisional

Probab=98.59  E-value=3.9e-07  Score=62.81  Aligned_cols=64  Identities=23%  Similarity=0.267  Sum_probs=52.3

Q ss_pred             CCceE-EE--ecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEEEecC
Q 037642            4 SPGKF-QL--KFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFEST   69 (74)
Q Consensus         4 ~pg~~-~~--~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~~~~   69 (74)
                      +||.. .+  +....|.+|||+|++++.+++  +.+.+++||++.||++..+.+.-.+.-...|++++.
T Consensus       192 ~PG~~~~~~~~~~~ee~i~Vl~G~~~~~~~~--~~~~l~~GD~i~~~~~~~h~~~N~g~~~~~yl~~k~  258 (266)
T PRK11171        192 EPGASIPFVETHVMEHGLYVLEGKGVYRLNN--DWVEVEAGDFIWMRAYCPQACYAGGPGPFRYLLYKD  258 (266)
T ss_pred             CCCCEEccCcCCCceEEEEEEeCEEEEEECC--EEEEeCCCCEEEECCCCCEEEECCCCCcEEEEEEcc
Confidence            45543 33  355789999999999999988  579999999999999999999987666677776653

>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase

Probab=98.57  E-value=4.1e-07  Score=66.81  Aligned_cols=61  Identities=15%  Similarity=0.195  Sum_probs=48.4

Q ss_pred             CCceE---EEecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEee--eEEEEEEE
Q 037642            4 SPGKF---QLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSV--AVDKYYKF   66 (74)
Q Consensus         4 ~pg~~---~~~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~--~~~k~y~~   66 (74)
                      .||..   ++|....|.+|||+|++++.+++  +++.+++||.++||+|.+|.|...+  +++-+.+.
T Consensus       384 ~PG~~~~~h~H~~~~E~~~Vl~G~~~v~~dg--~~~~l~~GDsi~ip~~~~H~~~N~g~~~~~~i~v~  449 (468)
T TIGR01479       384 KPGEKLSLQMHHHRAEHWIVVSGTARVTIGD--ETLLLTENESTYIPLGVIHRLENPGKIPLELIEVQ  449 (468)
T ss_pred             CCCCccCccccCCCceEEEEEeeEEEEEECC--EEEEecCCCEEEECCCCcEEEEcCCCCCEEEEEEE
Confidence            45652   45666788889999999999999  5799999999999999999999755  44433333

This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.

>TIGR03214 ura-cupin putative allantoin catabolism protein

Probab=98.55  E-value=6.1e-07  Score=61.72  Aligned_cols=43  Identities=23%  Similarity=0.384  Sum_probs=39.0

Q ss_pred             ceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEee
Q 037642           14 AEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSV   58 (74)
Q Consensus        14 ~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~   58 (74)
                      .+|++|||+|++++++++  +...|++||.++||+|..++|.-..
T Consensus        80 ~ee~iyVl~G~l~v~~~g--~~~~L~~Gd~~y~pa~~~H~~~N~~  122 (260)
T TIGR03214        80 IETFLFVISGEVNVTAEG--ETHELREGGYAYLPPGSKWTLANAQ  122 (260)
T ss_pred             eEEEEEEEeCEEEEEECC--EEEEECCCCEEEECCCCCEEEEECC
Confidence            489999999999999988  5799999999999999999997644

This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).

>PRK11171 hypothetical protein; Provisional

Probab=98.53  E-value=7.4e-07  Score=61.43  Aligned_cols=44  Identities=18%  Similarity=0.318  Sum_probs=39.8

Q ss_pred             CceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEee
Q 037642           13 DAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSV   58 (74)
Q Consensus        13 ~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~   58 (74)
                      ..+|++|||+|.+++.+++  +++.|++||.++||++..|++....
T Consensus        82 ~~eE~~~VlsG~l~v~~~g--~~~~L~~GDsi~~p~~~~H~~~N~g  125 (266)
T PRK11171         82 GAETFLFVVEGEITLTLEG--KTHALSEGGYAYLPPGSDWTLRNAG  125 (266)
T ss_pred             CceEEEEEEeCEEEEEECC--EEEEECCCCEEEECCCCCEEEEECC
Confidence            4589999999999999988  5799999999999999999998644

>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional

Probab=98.53  E-value=4.8e-07  Score=66.99  Aligned_cols=56  Identities=21%  Similarity=0.259  Sum_probs=47.0

Q ss_pred             EEecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEee--eEEEEEEE
Q 037642            9 QLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSV--AVDKYYKF   66 (74)
Q Consensus         9 ~~~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~--~~~k~y~~   66 (74)
                      ++|....|+.+||+|++++++++  +++.+++||.++||+|.+|.|.-.+  +++-+.+.
T Consensus       401 ~~H~~~~E~~~VlsG~~~v~idg--~~~~L~~GDSi~ip~g~~H~~~N~g~~~l~iI~V~  458 (478)
T PRK15460        401 QMHHHRAEHWVVVAGTAKVTIDG--DIKLLGENESIYIPLGATHCLENPGKIPLDLIEVR  458 (478)
T ss_pred             CCCCCCceEEEEEeeEEEEEECC--EEEEecCCCEEEECCCCcEEEEcCCCCCEEEEEEE
Confidence            55666789999999999999999  5799999999999999999999764  45444443

>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5

Probab=98.47  E-value=1.2e-06  Score=56.29  Aligned_cols=49  Identities=20%  Similarity=0.282  Sum_probs=44.6

Q ss_pred             EEEecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEee
Q 037642            8 FQLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSV   58 (74)
Q Consensus         8 ~~~~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~   58 (74)
                      +++|....|..+|++|.+.+++++  +...+.+||.++||+|..|+....+
T Consensus        78 lq~H~~R~E~W~Vv~G~a~v~~~~--~~~~~~~g~sv~Ip~g~~H~i~n~g  126 (151)
T PF01050_consen   78 LQYHHHRSEHWTVVSGTAEVTLDD--EEFTLKEGDSVYIPRGAKHRIENPG  126 (151)
T ss_pred             eeeecccccEEEEEeCeEEEEECC--EEEEEcCCCEEEECCCCEEEEECCC
Confidence            577888899999999999999998  4799999999999999999998654

3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process

>COG3123 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.46  E-value=2e-06  Score=50.88  Aligned_cols=57  Identities=26%  Similarity=0.529  Sum_probs=53.3

Q ss_pred             CCceEEEecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeE
Q 037642            4 SPGKFQLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAV   60 (74)
Q Consensus         4 ~pg~~~~~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~   60 (74)
                      .||.|.+...+.|.+.|+.|.+++.+++..+.+.+.||+.|-+|.+..+..++.+..
T Consensus        31 ~~geytFgTa~~E~Mtvv~Gal~v~lpgs~dWq~~~~Ge~F~VpgnS~F~lqVaeat   87 (94)
T COG3123          31 APGEYTFGTAAPEEMTVVSGALTVLLPGSDDWQVYTAGEVFNVPGNSEFDLQVAEAT   87 (94)
T ss_pred             eceeEEeccCCceEEEEEeeEEEEEcCCCcccEEecCCceEEcCCCCeEEEEEeeee
Confidence            488999999999999999999999999988899999999999999999999998874

>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family

Probab=98.42  E-value=2.5e-06  Score=61.37  Aligned_cols=57  Identities=21%  Similarity=0.342  Sum_probs=43.7

Q ss_pred             EEecCceEEEEEEecEEEEEeCC--CceEE--EECCCcEEEEcCCCeEEEEEeee-EEEEEEEe
Q 037642            9 QLKFDAEETCYLLKGKVKVYPKG--SSDWV--EFGAGDLVTIPKGLSCTWDVSVA-VDKYYKFE   67 (74)
Q Consensus         9 ~~~~~~~E~~~vleG~~~~~~~~--g~e~~--~~~~GD~v~~p~g~~~~~~~~~~-~~k~y~~~   67 (74)
                      ++| ...|+.|||+|++++.+.+  + +.+  .+++||+++||+|..|.+...+. .+-++++.
T Consensus        83 HwH-~~~E~~yVl~G~~~v~~~d~~g-~~~~~~L~~GD~~~fP~g~~H~~~n~~~~~~~l~vf~  144 (367)
T TIGR03404        83 HWH-KEAEWAYVLYGSCRITAVDENG-RNYIDDVGAGDLWYFPPGIPHSLQGLDEGCEFLLVFD  144 (367)
T ss_pred             ccC-CCceEEEEEeeEEEEEEEcCCC-cEEEeEECCCCEEEECCCCeEEEEECCCCeEEEEEeC
Confidence            566 4679999999999999953  3 345  49999999999999999997643 43333333

Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.

>PF12852 Cupin_6: Cupin

Probab=98.41  E-value=1.3e-06  Score=56.50  Aligned_cols=43  Identities=21%  Similarity=0.395  Sum_probs=37.9

Q ss_pred             ceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEE
Q 037642           14 AEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDV   56 (74)
Q Consensus        14 ~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~   56 (74)
                      ..-+++|++|+|++..+++.+++.+++||++++|+|..|+..-
T Consensus        35 ~~~fh~V~~G~~~l~~~~~~~~~~L~~GDivllp~g~~H~l~~   77 (186)
T PF12852_consen   35 GASFHVVLRGSCWLRVPGGGEPIRLEAGDIVLLPRGTAHVLSS   77 (186)
T ss_pred             ceEEEEEECCeEEEEEcCCCCeEEecCCCEEEEcCCCCeEeCC
Confidence            4789999999999998773368999999999999999999853

>PRK13502 transcriptional activator RhaR; Provisional

Probab=98.34  E-value=3.4e-06  Score=57.17  Aligned_cols=52  Identities=12%  Similarity=-0.016  Sum_probs=44.4

Q ss_pred             CceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEEE
Q 037642           13 DAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKF   66 (74)
Q Consensus        13 ~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~   66 (74)
                      +..|++++++|.+++.+++  +.+.++|||+++||+|..|.+...+.....+++
T Consensus        37 ~~~~l~~v~~G~~~~~i~~--~~~~l~~g~l~li~~~~~H~~~~~~~~~~~~~~   88 (282)
T PRK13502         37 EFCELVMVWRGNGLHVLNE--RPYRITRGDLFYIRAEDKHSYTSVNDLVLQNII   88 (282)
T ss_pred             ceEEEEEEecCcEEEEECC--EEEeecCCcEEEECCCCcccccccCCceEEEEE
Confidence            5789999999999999999  479999999999999999999876655444444

>PRK13501 transcriptional activator RhaR; Provisional

Probab=98.29  E-value=4.5e-06  Score=57.04  Aligned_cols=45  Identities=11%  Similarity=0.062  Sum_probs=41.2

Q ss_pred             CceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeee
Q 037642           13 DAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVA   59 (74)
Q Consensus        13 ~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~   59 (74)
                      +..|+.||++|.+++.+++  ..+.+++||+++||+|..|.++..++
T Consensus        37 ~~~ei~~i~~G~~~~~i~~--~~~~l~~g~~~~I~p~~~H~~~~~~~   81 (290)
T PRK13501         37 QFCEIVIVWRGNGLHVLND--HPYRITCGDVFYIQAADHHSYESVHD   81 (290)
T ss_pred             cceeEEEEecCceEEEECC--eeeeecCCeEEEEcCCCcccccccCC
Confidence            6899999999999999999  47999999999999999999986554

>PRK13500 transcriptional activator RhaR; Provisional

Probab=98.23  E-value=7.8e-06  Score=56.83  Aligned_cols=54  Identities=13%  Similarity=-0.015  Sum_probs=45.3

Q ss_pred             cCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEEEe
Q 037642           12 FDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFE   67 (74)
Q Consensus        12 ~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~~   67 (74)
                      .+..|++||++|.+.+.+++.  .+.+.+||+++||+|..|.+...+......++.
T Consensus        66 H~~~el~~v~~G~g~~~v~~~--~~~l~~Gdl~~I~~~~~H~~~~~~~~~~~~i~~  119 (312)
T PRK13500         66 HDFCELVIVWRGNGLHVLNDR--PYRITRGDLFYIHADDKHSYASVNDLVLQNIIY  119 (312)
T ss_pred             cceEEEEEEEcCeEEEEECCE--EEeecCCeEEEECCCCeecccccCCceEEEEEE
Confidence            357899999999999999994  799999999999999999998766654443433

>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]

Probab=98.22  E-value=1.2e-05  Score=54.26  Aligned_cols=67  Identities=19%  Similarity=0.325  Sum_probs=47.5

Q ss_pred             CCce---EEEec--CceEEEEEEecEEEEEeCCCc---eEEEECCCcEEEEcCCCeEEEEEee--eEEEEEEEecCC
Q 037642            4 SPGK---FQLKF--DAEETCYLLKGKVKVYPKGSS---DWVEFGAGDLVTIPKGLSCTWDVSV--AVDKYYKFESTS   70 (74)
Q Consensus         4 ~pg~---~~~~~--~~~E~~~vleG~~~~~~~~g~---e~~~~~~GD~v~~p~g~~~~~~~~~--~~~k~y~~~~~~   70 (74)
                      +||.   .++|-  ++.|++|+|+|++.+.+...+   .++.+++||++++|++.-|.-.-.+  ++..+.++.+..
T Consensus        88 t~G~~~~~H~Hp~ade~E~y~vi~G~g~m~v~~~~G~~~v~~~~~Gd~iyVPp~~gH~t~N~Gd~pLvf~~v~~~~~  164 (209)
T COG2140          88 TPGAMRELHYHPNADEPEIYYVLKGEGRMLVQKPEGEARVIAVRAGDVIYVPPGYGHYTINTGDEPLVFLNVYPADA  164 (209)
T ss_pred             cCCcccccccCCCCCcccEEEEEeccEEEEEEcCCCcEEEEEecCCcEEEeCCCcceEeecCCCCCEEEEEEEeCCC
Confidence            4663   24554  445599999999999886553   4678999999999999999877554  454444444443

>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []

Probab=98.21  E-value=1.5e-05  Score=51.67  Aligned_cols=47  Identities=21%  Similarity=0.461  Sum_probs=34.8

Q ss_pred             cCceEEEEEEecEEEEEeCCCc-eE--EEECCCcEEEEcCCCeEEEEEee
Q 037642           12 FDAEETCYLLKGKVKVYPKGSS-DW--VEFGAGDLVTIPKGLSCTWDVSV   58 (74)
Q Consensus        12 ~~~~E~~~vleG~~~~~~~~g~-e~--~~~~~GD~v~~p~g~~~~~~~~~   58 (74)
                      .+.+|+-||++|++.+.+..+. ..  +.+++||++.+|+|..|.+...+
T Consensus        90 H~deEvR~i~~G~g~Fdvr~~~~~wiri~~e~GDli~vP~g~~HrF~~~~  139 (157)
T PF03079_consen   90 HEDEEVRYIVDGSGYFDVRDGDDVWIRILCEKGDLIVVPAGTYHRFTLGE  139 (157)
T ss_dssp             ESS-EEEEEEECEEEEEEE-TTCEEEEEEEETTCEEEE-TT--EEEEEST
T ss_pred             cChheEEEEeCcEEEEEEEcCCCEEEEEEEcCCCEEecCCCCceeEEcCC
Confidence            4579999999999998874432 22  57999999999999999999877

ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.

>PF04209 HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR005708 Alkaptonuria (AKU), a rare hereditary disorder, was the first disease to be interpreted as an inborn error of metabolism

Probab=98.15  E-value=2.1e-05  Score=57.77  Aligned_cols=60  Identities=18%  Similarity=0.295  Sum_probs=46.8

Q ss_pred             EEEecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEEEecCC
Q 037642            8 FQLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFESTS   70 (74)
Q Consensus         8 ~~~~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~~~~~   70 (74)
                      +-++.+.||++++-+|++.|..+=|  .+.++|||+++||+|.+.+++..++. +.|++....
T Consensus       140 ~f~NaDGD~Li~~q~G~l~l~Te~G--~L~v~pGd~~VIPRG~~~rv~l~~p~-rgyi~E~~~  199 (424)
T PF04209_consen  140 AFRNADGDELIFPQQGSLRLETEFG--RLDVRPGDYVVIPRGTRFRVELPGPA-RGYIIENFG  199 (424)
T ss_dssp             EEEESSEEEEEEEEES-EEEEETTE--EEEE-TTEEEEE-TT--EEEE-SSSE-EEEEEEEES
T ss_pred             ceEcCCCCEEEEEEECCEEEEecCe--eEEEcCCeEEEECCeeEEEEEeCCCc-eEEEEEcCC
Confidence            3447789999999999999999998  59999999999999999999999775 788887543

The deficiency causes homogentisic aciduria, ochronosis, and arthritis. AKU patients are deficient for homogentisate 1,2 dioxygenase (1.13.11.5 from EC), the enzyme that mediates the conversion of homogentisate to maleylacetoacetate; a step in the catabolism of both tyrosine and phenylalanine. Homogentisate + O(2) = 4-maleylacetoacetate. ; GO: 0004411 homogentisate 1,2-dioxygenase activity, 0006559 L-phenylalanine catabolic process, 0006570 tyrosine metabolic process, 0055114 oxidation-reduction process; PDB: 1EY2_A 1EYB_A.

>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional

Probab=98.12  E-value=2.1e-05  Score=53.26  Aligned_cols=41  Identities=29%  Similarity=0.267  Sum_probs=37.7

Q ss_pred             CceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEE
Q 037642           13 DAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWD   55 (74)
Q Consensus        13 ~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~   55 (74)
                      +..|+.||++|.+.+.+++  +.+.+.|||+++||+|..|...
T Consensus        42 ~~~ei~~v~~G~~~~~i~~--~~~~l~~g~l~~i~p~~~H~~~   82 (278)
T PRK10296         42 DYYEFTLVLTGRYYQEING--KRVLLERGDFVFIPLGSHHQSF   82 (278)
T ss_pred             ccEEEEEEEeceEEEEECC--EEEEECCCcEEEeCCCCcccee
Confidence            6789999999999999999  4799999999999999999664

>PRK10371 DNA-binding transcriptional regulator MelR; Provisional

Probab=98.09  E-value=8.9e-06  Score=56.49  Aligned_cols=48  Identities=10%  Similarity=0.048  Sum_probs=42.4

Q ss_pred             CceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEE
Q 037642           13 DAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDK   62 (74)
Q Consensus        13 ~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k   62 (74)
                      ++.|++|+++|.+.+.+++  +.+.+.|||+++|++|..|.+...+..+.
T Consensus        45 ~e~Ei~yv~~G~~~~~i~g--~~~~l~~Gd~ili~s~~~H~~~~~~~~~~   92 (302)
T PRK10371         45 GQVEVNVPFDGDVEYLINN--EKVQINQGHITLFWACTPHQLTDPGNCRS   92 (302)
T ss_pred             ccEEEEEecCCcEEEEECC--EEEEEcCCcEEEEecCCcccccccCCCce
Confidence            4789999999999999999  47999999999999999999877666543

>PRK13503 transcriptional activator RhaS; Provisional

Probab=98.02  E-value=1e-05  Score=54.46  Aligned_cols=47  Identities=11%  Similarity=0.065  Sum_probs=42.0

Q ss_pred             cCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeE
Q 037642           12 FDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAV   60 (74)
Q Consensus        12 ~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~   60 (74)
                      .+..|+.+|++|.+++.+++.  .+.+++||+++||+|..+.+...+..
T Consensus        33 H~~~ei~~v~~G~~~~~i~~~--~~~l~~g~~~~i~~~~~h~~~~~~~~   79 (278)
T PRK13503         33 HDFHEIVIVEHGTGIHVFNGQ--PYTLSGGTVCFVRDHDRHLYEHTDNL   79 (278)
T ss_pred             cCceeEEEEecCceeeEecCC--cccccCCcEEEECCCccchhhhccCc
Confidence            468999999999999999995  69999999999999999998776553

>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA

Probab=98.01  E-value=2.5e-05  Score=52.87  Aligned_cols=45  Identities=11%  Similarity=0.061  Sum_probs=40.6

Q ss_pred             ceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeE
Q 037642           14 AEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAV   60 (74)
Q Consensus        14 ~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~   60 (74)
                      ..|++++++|.+.+.+++  ..+.+++||++++|+|..+.+......
T Consensus        44 ~~~l~~~~~G~~~~~~~~--~~~~l~~g~~~ii~~~~~H~~~~~~~~   88 (287)
T TIGR02297        44 YYQLHYLTEGSIALQLDE--HEYSEYAPCFFLTPPSVPHGFVTDLDA   88 (287)
T ss_pred             ceeEEEEeeCceEEEECC--EEEEecCCeEEEeCCCCccccccCCCc
Confidence            589999999999999998  479999999999999999999876654

This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.

>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=97.98  E-value=7.1e-05  Score=49.35  Aligned_cols=57  Identities=16%  Similarity=0.304  Sum_probs=43.9

Q ss_pred             cCceEEEEEEecEEEEEeCCCc---eEEEECCCcEEEEcCCCeEEEEEeee--EEEEEEEec
Q 037642           12 FDAEETCYLLKGKVKVYPKGSS---DWVEFGAGDLVTIPKGLSCTWDVSVA--VDKYYKFES   68 (74)
Q Consensus        12 ~~~~E~~~vleG~~~~~~~~g~---e~~~~~~GD~v~~p~g~~~~~~~~~~--~~k~y~~~~   68 (74)
                      ...+|+-|+|+|.+.+.+.+..   -.+.+.+||++.+|+|..|.++..+.  ++++=.+..
T Consensus        93 H~d~EvRy~vaG~GiF~v~~~d~~~~~i~c~~gDLI~vP~gi~HwFtlt~~~~f~AvRlF~~  154 (181)
T COG1791          93 HTDDEVRYFVAGEGIFDVHSPDGKVYQIRCEKGDLISVPPGIYHWFTLTESPNFKAVRLFTE  154 (181)
T ss_pred             cCCceEEEEEecceEEEEECCCCcEEEEEEccCCEEecCCCceEEEEccCCCcEEEEEEeeC
Confidence            4579999999999998875542   24779999999999999999998874  444433433

>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A

Probab=97.96  E-value=0.00014  Score=42.45  Aligned_cols=51  Identities=25%  Similarity=0.446  Sum_probs=37.7

Q ss_pred             CCce-EEEe-cCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeE
Q 037642            4 SPGK-FQLK-FDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAV   60 (74)
Q Consensus         4 ~pg~-~~~~-~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~   60 (74)
                      +||. +..| ....|.+|||+|++.  .+++    .+.+||.+..|+|..++..+.+.+
T Consensus        32 ~pG~~~p~H~H~g~ee~~VLeG~~~--d~~~----~~~~G~~~~~p~g~~h~~~s~~gc   84 (91)
T PF12973_consen   32 EPGASLPRHRHPGGEEILVLEGELS--DGDG----RYGAGDWLRLPPGSSHTPRSDEGC   84 (91)
T ss_dssp             -TTEEEEEEEESS-EEEEEEECEEE--ETTC----EEETTEEEEE-TTEEEEEEESSCE
T ss_pred             CCCCCcCccCCCCcEEEEEEEEEEE--ECCc----cCCCCeEEEeCCCCccccCcCCCE
Confidence            3555 4454 467888899999986  3442    579999999999999999988775

>PRK05341 homogentisate 1,2-dioxygenase; Provisional

Probab=97.96  E-value=6.6e-05  Score=55.36  Aligned_cols=62  Identities=15%  Similarity=0.288  Sum_probs=53.6

Q ss_pred             EEEecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEEEecCCC
Q 037642            8 FQLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFESTSS   71 (74)
Q Consensus         8 ~~~~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~~~~~~   71 (74)
                      +-++.|.|+++++.+|.+.|..+=|  .+.++|||+++||+|.+.+.+..+.-.+.|++...++
T Consensus       148 ~f~NaDGD~Livpq~G~l~i~TEfG--~L~v~pgei~VIPRG~~frv~l~~gp~rgyi~E~~g~  209 (438)
T PRK05341        148 YFYNADGELLIVPQQGRLRLATELG--VLDVEPGEIAVIPRGVKFRVELPDGPARGYVCENYGA  209 (438)
T ss_pred             eeecCCCCEEEEEEeCCEEEEEecc--ceEecCCCEEEEcCccEEEEecCCCCeeEEEEEecCC
Confidence            3456788999999999999999998  5999999999999999999998665558899876653

>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins

Probab=97.91  E-value=0.00013  Score=45.89  Aligned_cols=57  Identities=12%  Similarity=0.149  Sum_probs=50.7

Q ss_pred             CceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEEEecC
Q 037642           13 DAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFEST   69 (74)
Q Consensus        13 ~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~~~~   69 (74)
                      +.-|-+||++|+++++.-+.++.+.++||.++.+-+...|.....+.++.+=+|+-|
T Consensus        54 nHlEAvyci~G~Gev~~~~~G~~~~i~pGt~YaLd~hD~H~lra~~dm~~vCVFnPp  110 (126)
T PF06339_consen   54 NHLEAVYCIEGEGEVEDLDTGEVHPIKPGTMYALDKHDRHYLRAKTDMRLVCVFNPP  110 (126)
T ss_pred             CceEEEEEEeceEEEEEccCCcEEEcCCCeEEecCCCccEEEEecCCEEEEEEcCCC
Confidence            468999999999999986333789999999999999999999999999998888765

The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway [].; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process

>TIGR01015 hmgA homogentisate 1,2-dioxygenase

Probab=97.87  E-value=0.00013  Score=53.73  Aligned_cols=60  Identities=13%  Similarity=0.122  Sum_probs=52.4

Q ss_pred             EEEecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEEEecCC
Q 037642            8 FQLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFESTS   70 (74)
Q Consensus         8 ~~~~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~~~~~   70 (74)
                      +-++.|.|+++++-+|.+.|..+=|  .+.++|||+++||+|.+.+.+..++. +.|++..-.
T Consensus       142 ~f~NaDGD~Livpq~G~l~i~TEfG--~L~v~pgei~VIPRG~~frv~l~gp~-rgyi~E~~g  201 (429)
T TIGR01015       142 AFYNADGDFLIVPQQGALLITTEFG--RLLVEPNEICVIPRGVRFRVTVLEPA-RGYICEVYG  201 (429)
T ss_pred             eeeccCCCEEEEEEeCcEEEEEecc--ceEecCCCEEEecCccEEEEeeCCCc-eEEEEeccC
Confidence            3456788999999999999999998  59999999999999999999998775 688877654

Missing in human disease alkaptonuria.

>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B

Probab=97.86  E-value=0.00025  Score=41.72  Aligned_cols=44  Identities=23%  Similarity=0.274  Sum_probs=35.1

Q ss_pred             cCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEe
Q 037642           12 FDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVS   57 (74)
Q Consensus        12 ~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~   57 (74)
                      .+..-+++|++|.+.+++++  .+..+.+||.+.+|+|-.-..+-.
T Consensus        31 ~~~~~vF~V~~G~v~Vti~~--~~f~v~~G~~F~VP~gN~Y~i~N~   74 (85)
T PF11699_consen   31 RDNTMVFYVIKGKVEVTIHE--TSFVVTKGGSFQVPRGNYYSIKNI   74 (85)
T ss_dssp             -SEEEEEEEEESEEEEEETT--EEEEEETT-EEEE-TT-EEEEEE-
T ss_pred             CCcEEEEEEEeCEEEEEEcC--cEEEEeCCCEEEECCCCEEEEEEC
Confidence            45677899999999999999  479999999999999998887753

>PLN02658 homogentisate 1,2-dioxygenase

Probab=97.84  E-value=0.00015  Score=53.47  Aligned_cols=61  Identities=16%  Similarity=0.233  Sum_probs=52.7

Q ss_pred             EEEecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEEEecCC
Q 037642            8 FQLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFESTS   70 (74)
Q Consensus         8 ~~~~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~~~~~   70 (74)
                      +-++.|.|+++++-+|.+.|..+=|  .+.++|||+++||+|.+.+.+..+.-.+.|++..-.
T Consensus       141 ~f~NaDGD~Livpq~G~l~i~TEfG--~L~v~pgei~VIPRG~~frv~l~~gp~rgyv~E~~g  201 (435)
T PLN02658        141 AFCNADGDFLIVPQQGRLWIKTELG--KLQVSPGEIVVIPRGFRFAVDLPDGPSRGYVLEIFG  201 (435)
T ss_pred             eeecCCCCEEEEEEeCCEEEEEecc--ceEecCCCEEEecCccEEEEecCCCCeeEEEEeecC
Confidence            3456788999999999999999998  599999999999999999999866555788887654

>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1

Probab=97.80  E-value=0.00011  Score=47.38  Aligned_cols=48  Identities=19%  Similarity=0.325  Sum_probs=32.5

Q ss_pred             EEecC-ceEEEEEEecEEEEEe--CCCceEEEECCCcEEEEcCCCeEEEEE
Q 037642            9 QLKFD-AEETCYLLKGKVKVYP--KGSSDWVEFGAGDLVTIPKGLSCTWDV   56 (74)
Q Consensus         9 ~~~~~-~~E~~~vleG~~~~~~--~~g~e~~~~~~GD~v~~p~g~~~~~~~   56 (74)
                      .||.+ .+|++|-++|.+.+.+  ++..+.+.+++||++++|++.+|.=.=
T Consensus        47 DyHine~eE~FyQ~kG~m~Lkv~e~g~~kdi~I~EGe~fLLP~~vpHsP~R   97 (151)
T PF06052_consen   47 DYHINETEEFFYQLKGDMCLKVVEDGKFKDIPIREGEMFLLPANVPHSPQR   97 (151)
T ss_dssp             SEEE-SS-EEEEEEES-EEEEEEETTEEEEEEE-TTEEEEE-TT--EEEEE
T ss_pred             ccccCCcceEEEEEeCcEEEEEEeCCceEEEEeCCCcEEecCCCCCCCCcC
Confidence            46665 5899999999999876  333356889999999999999997653

13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.

>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase

Probab=97.80  E-value=0.0001  Score=52.80  Aligned_cols=46  Identities=13%  Similarity=0.219  Sum_probs=40.9

Q ss_pred             CceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeE
Q 037642           13 DAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAV   60 (74)
Q Consensus        13 ~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~   60 (74)
                      ....+++|++|++..++++  +.++.++||+|.+|....+++...++.
T Consensus       269 T~s~Vf~VieG~G~s~ig~--~~~~W~~gD~f~vPsW~~~~h~a~~da  314 (335)
T TIGR02272       269 TDATVFCVVEGRGQVRIGD--AVFRFSPKDVFVVPSWHPVRFEASDDA  314 (335)
T ss_pred             cccEEEEEEeCeEEEEECC--EEEEecCCCEEEECCCCcEecccCCCe
Confidence            3589999999999999988  479999999999999999888877664

This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.

>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]

Probab=97.76  E-value=0.00014  Score=45.74  Aligned_cols=47  Identities=26%  Similarity=0.473  Sum_probs=37.5

Q ss_pred             EEecCceEEEEEEecEEEEEeCCC-ceEEEECCCcEEEEcCCCeEEEE
Q 037642            9 QLKFDAEETCYLLKGKVKVYPKGS-SDWVEFGAGDLVTIPKGLSCTWD   55 (74)
Q Consensus         9 ~~~~~~~E~~~vleG~~~~~~~~g-~e~~~~~~GD~v~~p~g~~~~~~   55 (74)
                      +.|-..+-.+|||+|++...-.+- ++...++|||+++||+|.++.=-
T Consensus        62 H~H~~hEtaIYvlsG~ah~w~G~rLE~ha~~~pGDf~YiPpgVPHqp~  109 (142)
T COG4101          62 HLHEEHETAIYVLSGEAHTWYGNRLEEHAEVGPGDFFYIPPGVPHQPA  109 (142)
T ss_pred             cccccccEEEEEEeceeeeeeccceeeeEEecCCCeEEcCCCCCCccc
Confidence            455667889999999999886553 34578999999999999988643

>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]

Probab=97.76  E-value=0.0001  Score=47.39  Aligned_cols=45  Identities=27%  Similarity=0.450  Sum_probs=37.0

Q ss_pred             EEecCceEEEEEEecEEEEEeCCC-ceEEEECCCcEEEEcCCCeEE
Q 037642            9 QLKFDAEETCYLLKGKVKVYPKGS-SDWVEFGAGDLVTIPKGLSCT   53 (74)
Q Consensus         9 ~~~~~~~E~~~vleG~~~~~~~~g-~e~~~~~~GD~v~~p~g~~~~   53 (74)
                      +||...-|+.-||+|++.+.+.+. ...+.+++||+++||+|.-|.
T Consensus        59 HYHs~aHEVl~vlrgqA~l~iGG~~G~el~v~~GDvlliPAGvGH~  104 (163)
T COG4297          59 HYHSGAHEVLGVLRGQAGLQIGGADGQELEVGEGDVLLIPAGVGHC  104 (163)
T ss_pred             cccCCcceEEEEecceeEEEecCCCCceeeecCCCEEEEecCcccc
Confidence            355678999999999999998442 146999999999999998763

>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5

Probab=97.75  E-value=0.00023  Score=47.15  Aligned_cols=47  Identities=23%  Similarity=0.194  Sum_probs=32.0

Q ss_pred             cCceEEEEEEecEEEEEeCCCc-------eEEEECCCcEEEEcCCCeEEEEEee
Q 037642           12 FDAEETCYLLKGKVKVYPKGSS-------DWVEFGAGDLVTIPKGLSCTWDVSV   58 (74)
Q Consensus        12 ~~~~E~~~vleG~~~~~~~~g~-------e~~~~~~GD~v~~p~g~~~~~~~~~   58 (74)
                      .+..|++++|+|++.+.+.+..       ....++|||.++||+++-|.---.+
T Consensus        81 ~~~pEvY~vl~G~g~~lLq~~~~~~~~~~~~v~~~~G~~v~IPp~yaH~tIN~g  134 (182)
T PF06560_consen   81 LSYPEVYEVLSGEGLILLQKEEGDDVGDVIAVEAKPGDVVYIPPGYAHRTINTG  134 (182)
T ss_dssp             TT--EEEEEEESSEEEEEE-TTS-----EEEEEE-TTEEEEE-TT-EEEEEE-S
T ss_pred             CCCCcEEEEEeCEEEEEEEecCCCcceeEEEEEeCCCCEEEECCCceEEEEECC
Confidence            4589999999999998863321       2367999999999999999776444

3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....

>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=97.74  E-value=7.9e-05  Score=48.93  Aligned_cols=46  Identities=24%  Similarity=0.535  Sum_probs=38.1

Q ss_pred             CceEEEEEEecEEEEEeCCCc-eE--EEECCCcEEEEcCCCeEEEEEee
Q 037642           13 DAEETCYLLKGKVKVYPKGSS-DW--VEFGAGDLVTIPKGLSCTWDVSV   58 (74)
Q Consensus        13 ~~~E~~~vleG~~~~~~~~g~-e~--~~~~~GD~v~~p~g~~~~~~~~~   58 (74)
                      ..+|+-|||+|.+.+-+.+.+ ..  +.++.||+++||+|.-|++.+..
T Consensus        92 ~deeiR~il~GtgYfDVrd~dd~WIRi~vekGDlivlPaGiyHRFTtt~  140 (179)
T KOG2107|consen   92 EDEEIRYILEGTGYFDVRDKDDQWIRIFVEKGDLIVLPAGIYHRFTTTP  140 (179)
T ss_pred             chhheEEEeecceEEeeccCCCCEEEEEEecCCEEEecCcceeeeecCc
Confidence            468999999999999876542 23  45899999999999999998765

>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]

Probab=97.59  E-value=0.00053  Score=47.10  Aligned_cols=40  Identities=23%  Similarity=0.397  Sum_probs=37.2

Q ss_pred             ceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEE
Q 037642           14 AEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWD   55 (74)
Q Consensus        14 ~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~   55 (74)
                      .+-+.||++|++++..++  ++..+++|+.+++|+|...+.+
T Consensus        83 ae~~lfVv~Ge~tv~~~G--~th~l~eggyaylPpgs~~~~~  122 (264)
T COG3257          83 AETFLFVVSGEITVKAEG--KTHALREGGYAYLPPGSGWTLR  122 (264)
T ss_pred             ceEEEEEEeeeEEEEEcC--eEEEeccCCeEEeCCCCcceEe
Confidence            577899999999999999  5899999999999999998888

>PLN00212 glutelin; Provisional

Probab=97.56  E-value=0.00095  Score=50.01  Aligned_cols=51  Identities=16%  Similarity=0.271  Sum_probs=40.7

Q ss_pred             EEecCceEEEEEEecEEEEEeCC--CceEE--EECCCcEEEEcCCCeEEEEEeee
Q 037642            9 QLKFDAEETCYLLKGKVKVYPKG--SSDWV--EFGAGDLVTIPKGLSCTWDVSVA   59 (74)
Q Consensus         9 ~~~~~~~E~~~vleG~~~~~~~~--g~e~~--~~~~GD~v~~p~g~~~~~~~~~~   59 (74)
                      +||..+.+++||++|++.+.+-+  |...+  .|++||+++||+|..+.-.....
T Consensus       364 Hwn~nA~eI~yV~rG~g~vqvV~~~g~~vf~~~L~~GdvfVVPqg~~v~~~A~~e  418 (493)
T PLN00212        364 FWNVNAHSVVYITQGRARVQVVSNNGKTVFNGVLRPGQLLIIPQHYAVLKKAERE  418 (493)
T ss_pred             eecCCCCEEEEEeecceEEEEEcCCCCEEEEEEEcCCCEEEECCCCeEEEeecCC
Confidence            67788999999999999998744  22233  69999999999999987655543

>PLN00212 glutelin; Provisional

Probab=97.54  E-value=0.0008  Score=50.41  Aligned_cols=67  Identities=16%  Similarity=0.283  Sum_probs=49.0

Q ss_pred             CCceE--EEecCceEEEEEEecEEEEEeCC--Cce--------------------------EEEECCCcEEEEcCCCeEE
Q 037642            4 SPGKF--QLKFDAEETCYLLKGKVKVYPKG--SSD--------------------------WVEFGAGDLVTIPKGLSCT   53 (74)
Q Consensus         4 ~pg~~--~~~~~~~E~~~vleG~~~~~~~~--g~e--------------------------~~~~~~GD~v~~p~g~~~~   53 (74)
                      +|+..  +.+.+.++++||++|++.+.+-.  .-+                          ...+++||++.||+|..+.
T Consensus        88 ~p~gL~lP~y~na~~liyV~qG~G~~G~v~pGcpeT~~~~~~~~~~~~~~~~~~~~d~hqkv~~lr~GDViaiPaG~~hw  167 (493)
T PLN00212         88 EPQGLLLPRYSNTPGLVYIIQGRGSMGLTFPGCPATYQQQFQQFLTEGQSQSQKFRDEHQKIHQFRQGDVVALPAGVAHW  167 (493)
T ss_pred             cCCcccCccccCCCeEEEEEeCeEEEEEEeCCCcchhhhhcccccccccccccccccccccceEeccCCEEEECCCCeEE
Confidence            35554  22347899999999999988641  111                          1589999999999999999


Q ss_pred             EEEeee--EEEEEEEecCC
Q 037642           54 WDVSVA--VDKYYKFESTS   70 (74)
Q Consensus        54 ~~~~~~--~~k~y~~~~~~   70 (74)
                      +--.+.  +..+++++.+.
T Consensus       168 ~yN~Gd~~~v~v~~~d~~n  186 (493)
T PLN00212        168 FYNDGDAPVVALYVYDINN  186 (493)
T ss_pred             EEeCCCCcEEEEEEEeccc
Confidence            988764  55677776544

>COG3508 HmgA Homogentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=97.45  E-value=0.00078  Score=49.01  Aligned_cols=60  Identities=18%  Similarity=0.302  Sum_probs=52.1

Q ss_pred             eEEEecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEEEec
Q 037642            7 KFQLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFES   68 (74)
Q Consensus         7 ~~~~~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~~~   68 (74)
                      .+-++.|.++++++-.|+..+..+=|  .+.++|||+.+||.|.+.+.+..++-...|++.-
T Consensus       139 ~~f~NADge~Livpq~G~l~l~te~G--~l~v~pgeiavIPRG~~frve~~~~~~rgy~~En  198 (427)
T COG3508         139 RFFRNADGELLIVPQQGELRLKTELG--VLEVEPGEIAVIPRGTTFRVELKDGEARGYGCEN  198 (427)
T ss_pred             hhhhcCCCCEEEEeecceEEEEEeec--eEEecCCcEEEeeCCceEEEEecCCceEEEEEee
Confidence            34456788999999999999999998  5999999999999999999999887767777653

>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER)

Probab=97.29  E-value=0.0056  Score=39.89  Aligned_cols=57  Identities=16%  Similarity=0.140  Sum_probs=32.1

Q ss_pred             cCceEEEEEEecEEEEEeCCC-------ceEEEECCCcEEEEcCCCeEEE-EEe--eeEEEEEEEec
Q 037642           12 FDAEETCYLLKGKVKVYPKGS-------SDWVEFGAGDLVTIPKGLSCTW-DVS--VAVDKYYKFES   68 (74)
Q Consensus        12 ~~~~E~~~vleG~~~~~~~~g-------~e~~~~~~GD~v~~p~g~~~~~-~~~--~~~~k~y~~~~   68 (74)
                      ...+|+++||+|++++.+...       -+++.+.|++++.||.+..++. .+.  +.++.+-++++
T Consensus        62 HsCEEVFvVLkG~GTl~l~~~~~~~pG~pqef~~~pnSTf~IPvn~~HQv~NT~e~eDlqvlViiSr  128 (167)
T PF02041_consen   62 HSCEEVFVVLKGSGTLYLASSHEKYPGKPQEFPIFPNSTFHIPVNDAHQVWNTNEHEDLQVLVIISR  128 (167)
T ss_dssp             ESS-EEEEEEE--EEEEE--SSSSS--S-EEEEE-TTEEEEE-TT--EEEE---SSS-EEEEEEEES
T ss_pred             ccccEEEEEEecceEEEEecccccCCCCceEEEecCCCeEEeCCCCcceeecCCCCcceEEEEEecC
Confidence            357999999999999998643       1458899999999999999874 444  34433333443

The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.

>PRK10572 DNA-binding transcriptional regulator AraC; Provisional

Probab=97.29  E-value=0.0012  Score=44.92  Aligned_cols=43  Identities=16%  Similarity=0.247  Sum_probs=37.3

Q ss_pred             CceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEe
Q 037642           13 DAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVS   57 (74)
Q Consensus        13 ~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~   57 (74)
                      ...++.++++|.+.+..++.  .+.+++||+++||+|..+.+...
T Consensus        48 ~~~~i~~~~~G~~~~~~~~~--~~~~~~g~~i~i~p~~~h~~~~~   90 (290)
T PRK10572         48 KGYILNLTIRGQGVIFNGGR--AFVCRPGDLLLFPPGEIHHYGRH   90 (290)
T ss_pred             cceEEEEEEeccEEEecCCe--eEecCCCCEEEECCCCceeeccC
Confidence            35788999999999998884  69999999999999999986543

>PF14525 AraC_binding_2: AraC-binding-like domain

Probab=97.26  E-value=0.0022  Score=39.67  Aligned_cols=50  Identities=20%  Similarity=0.256  Sum_probs=44.0

Q ss_pred             ceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEE
Q 037642           14 AEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYK   65 (74)
Q Consensus        14 ~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~   65 (74)
                      ..-+++.++|.+.++.++  ....+.|||+++++++.+.+....+..+++.+
T Consensus        55 ~~~l~~~~~G~~~~~~~g--~~~~~~pg~~~l~d~~~~~~~~~~~~~~~~~l  104 (172)
T PF14525_consen   55 HYLLVLPLSGSARIEQGG--REVELAPGDVVLLDPGQPYRLEFSAGCRQLSL  104 (172)
T ss_pred             EEEEEEEccCCEEEEECC--EEEEEcCCeEEEEcCCCCEEEEECCCccEEEE
Confidence            456778899999999998  47999999999999999999999988877665

>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family

Probab=97.20  E-value=0.00083  Score=45.17  Aligned_cols=51  Identities=12%  Similarity=0.093  Sum_probs=41.1

Q ss_pred             CceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeee--EEEEEEEecC
Q 037642           13 DAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVA--VDKYYKFEST   69 (74)
Q Consensus        13 ~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~--~~k~y~~~~~   69 (74)
                      ...|+.+||+|++  ..++    ..+.+||.+.+|+|..|+....+.  +..+-+.+++
T Consensus       146 ~G~E~tlVLeG~f--~de~----g~y~~Gd~i~~p~~~~H~p~a~~~~~Cicl~v~dap  198 (215)
T TIGR02451       146 KGFELTLVLHGAF--SDET----GVYGVGDFEEADGSVQHQPRTVSGGDCLCLAVLDAP  198 (215)
T ss_pred             CCcEEEEEEEEEE--EcCC----CccCCCeEEECCCCCCcCcccCCCCCeEEEEEecCC
Confidence            5688999999996  3333    478999999999999999999965  7766666654

The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.

>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []

Probab=97.18  E-value=0.0067  Score=37.91  Aligned_cols=52  Identities=13%  Similarity=0.092  Sum_probs=33.4

Q ss_pred             EEEecCceEEEEEEecEEEEEeCCCc--eEEEECCC-cEEEEcCCCeEEEEEeee
Q 037642            8 FQLKFDAEETCYLLKGKVKVYPKGSS--DWVEFGAG-DLVTIPKGLSCTWDVSVA   59 (74)
Q Consensus         8 ~~~~~~~~E~~~vleG~~~~~~~~g~--e~~~~~~G-D~v~~p~g~~~~~~~~~~   59 (74)
                      |+.|....+++++++|++.+.++++.  +.+.|..- ..+.||+|..+.+.-.++
T Consensus        48 ~H~Hk~~~~~~~~l~Gs~~v~~~d~~~~~~~~L~~~~~~L~Ippg~w~~~~~~s~  102 (131)
T PF05523_consen   48 WHAHKKTTQWFIVLSGSFKVVLDDGREEEEFILDEPNKGLYIPPGVWHGIKNFSE  102 (131)
T ss_dssp             EEEESS--EEEEEEES-EEEEEE-SS-EEEEEE--TTEEEEE-TT-EEEEE---T
T ss_pred             ccccccccEEEEEEeCEEEEEEecCCCcEEEEECCCCeEEEECCchhhHhhccCC
Confidence            67888899999999999999987763  34556655 488999999999964443

It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.

>PRK09685 DNA-binding transcriptional activator FeaR; Provisional

Probab=97.17  E-value=0.0031  Score=43.05  Aligned_cols=48  Identities=19%  Similarity=0.236  Sum_probs=40.4

Q ss_pred             ceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEE
Q 037642           14 AEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKY   63 (74)
Q Consensus        14 ~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~   63 (74)
                      ...+.++++|.+.+..++.  .+.+.|||++++|++.++.+...+....+
T Consensus        71 ~~~l~~~~~G~~~~~~~g~--~~~l~~G~~~l~~~~~p~~~~~~~~~~~~  118 (302)
T PRK09685         71 HFFTVFQLSGHAIIEQDDR--QVQLAAGDITLIDASRPCSIYPQGLSEQI  118 (302)
T ss_pred             cEEEEEEecceEEEEECCe--EEEEcCCCEEEEECCCCcEeecCCCceeE
Confidence            3456778999999999994  69999999999999999998877766544

>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase

Probab=97.08  E-value=0.0016  Score=46.79  Aligned_cols=46  Identities=11%  Similarity=0.141  Sum_probs=37.5

Q ss_pred             CceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeee
Q 037642           13 DAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVA   59 (74)
Q Consensus        13 ~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~   59 (74)
                      ....+.+|++|++.++.-+| +.+.+++||+|+.|.+..|.+...+.
T Consensus       100 t~sAl~~vveG~G~~t~V~g-~~~~~~~gD~~~tP~w~wH~H~n~~d  145 (335)
T TIGR02272       100 TQSALRFIVEGKGAFTAVDG-ERTTMHPGDFIITPSWTWHDHGNPGD  145 (335)
T ss_pred             ccceEEEEEEcCceEEEECC-EEEeeeCCCEEEeCCCeeEecccCCC
Confidence            46789999999996544344 68999999999999999999876544

This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.

>TIGR00218 manA mannose-6-phosphate isomerase, class I

Probab=97.04  E-value=0.0056  Score=42.78  Aligned_cols=41  Identities=20%  Similarity=0.293  Sum_probs=33.9

Q ss_pred             CceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCC-eEEEE
Q 037642           13 DAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGL-SCTWD   55 (74)
Q Consensus        13 ~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~-~~~~~   55 (74)
                      +...++.|++|++++..++  +.+.+++|++++||++. ..+.+
T Consensus       252 ~~~~il~v~~G~~~i~~~~--~~~~l~~G~~~~ipa~~~~~~i~  293 (302)
T TIGR00218       252 QSALILSVLEGSGRIKSGG--KTLPLKKGESFFIPAHLGPFTIE  293 (302)
T ss_pred             CCcEEEEEEcceEEEEECC--EEEEEecccEEEEccCCccEEEE
Confidence            3577899999999998755  46999999999999987 45554

The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.

>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]

Probab=96.98  E-value=0.0026  Score=46.40  Aligned_cols=53  Identities=19%  Similarity=0.171  Sum_probs=45.8

Q ss_pred             CceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEEE
Q 037642           13 DAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKF   66 (74)
Q Consensus        13 ~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~   66 (74)
                      +..-+..|++|++++..+.+ ..+.+++||+++||++....+...++..+.|..
T Consensus       352 ~~~SIllv~~G~g~l~~~t~-~~~~v~rG~V~fI~a~~~i~~~~~sd~~~~yrA  404 (411)
T KOG2757|consen  352 DGPSILLVLKGSGILKTDTD-SKILVNRGDVLFIPANHPIHLSSSSDPFLGYRA  404 (411)
T ss_pred             CCceEEEEEecceEEecCCC-CceeeccCcEEEEcCCCCceeeccCcceeeeec
Confidence            46788999999999999944 369999999999999999999988887677763

>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria

Probab=96.85  E-value=0.0095  Score=33.06  Aligned_cols=53  Identities=23%  Similarity=0.311  Sum_probs=42.0

Q ss_pred             CCceE-EEecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEE
Q 037642            4 SPGKF-QLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDV   56 (74)
Q Consensus         4 ~pg~~-~~~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~   56 (74)
                      .||.. .+........-|.+|.+.++.++..+.+-|+|||.+.+++|.....+.
T Consensus         5 ~~g~~~~lr~~~~~~l~v~~G~vWlT~~g~~~D~~L~~G~~l~l~~g~~vvl~a   58 (63)
T PF11142_consen    5 APGETLSLRAAAGQRLRVESGRVWLTREGDPDDYWLQAGDSLRLRRGGRVVLSA   58 (63)
T ss_pred             CCCceEEeEcCCCcEEEEccccEEEECCCCCCCEEECCCCEEEeCCCCEEEEEe
Confidence            45553 455556666999999999999876567999999999999998876554

>PRK15131 mannose-6-phosphate isomerase; Provisional

Probab=96.81  E-value=0.012  Score=42.97  Aligned_cols=40  Identities=13%  Similarity=0.231  Sum_probs=32.9

Q ss_pred             EecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCe
Q 037642           10 LKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLS   51 (74)
Q Consensus        10 ~~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~   51 (74)
                      ...+...+++|++|++++..++  +...+++|+.+++|++..
T Consensus       335 ~~~~~~~Illv~~G~~~i~~~~--~~~~l~~G~~~fipa~~~  374 (389)
T PRK15131        335 LSQQSAAILFCVEGEAVLWKGE--QQLTLKPGESAFIAANES  374 (389)
T ss_pred             ecCCCcEEEEEEcceEEEEeCC--eEEEECCCCEEEEeCCCc
Confidence            3334578999999999998755  468999999999999764

>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional

Probab=96.80  E-value=0.014  Score=41.05  Aligned_cols=57  Identities=21%  Similarity=0.293  Sum_probs=43.5

Q ss_pred             cCceEE-EEEEecEEEEEeCCCceEEEECCCcEEEEcCCCe-EEEEEeee--EEEEEEEecCC
Q 037642           12 FDAEET-CYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLS-CTWDVSVA--VDKYYKFESTS   70 (74)
Q Consensus        12 ~~~~E~-~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~-~~~~~~~~--~~k~y~~~~~~   70 (74)
                      .+..|+ +..|.|.++++.++  +.+.+.+.|++++|+|.+ .++.....  -.++|++.++.
T Consensus        71 l~rrE~giV~lgG~~~V~vdG--~~~~l~~~d~LYVp~G~~~v~~as~~a~~paef~i~sAPA  131 (276)
T PRK00924         71 LERRELGIINIGGAGTVTVDG--ETYELGHRDALYVGKGAKEVVFASADAANPAKFYLNSAPA  131 (276)
T ss_pred             cCCcEEEEEEccceEEEEECC--EEEecCCCcEEEECCCCcEEEEEecCCCCCcEEEEEcccc
Confidence            344554 56789999999988  578999999999999977 66643321  25999998875

>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=96.49  E-value=0.013  Score=42.00  Aligned_cols=43  Identities=14%  Similarity=0.193  Sum_probs=38.3

Q ss_pred             CceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEe
Q 037642           13 DAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVS   57 (74)
Q Consensus        13 ~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~   57 (74)
                      ...-++.|.+|++++.+++  +.+...+||+|++|....+.....
T Consensus       280 t~s~iy~V~eGsg~~~Ig~--~rf~~~~~D~fvVPsW~~~~~~~g  322 (351)
T COG3435         280 TDSTIYHVVEGSGYTIIGG--ERFDWSAGDIFVVPSWAWHEHVNG  322 (351)
T ss_pred             cCCEEEEEEecceeEEECC--EEeeccCCCEEEccCcceeecccC
Confidence            3567889999999999999  589999999999999999888773

>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB)

Probab=96.39  E-value=0.023  Score=39.38  Aligned_cols=58  Identities=21%  Similarity=0.353  Sum_probs=42.0

Q ss_pred             cCceE-EEEEEecEEEEEeCCCceEEEECCC--------cEEEEcCCCeEEEEEeeeEEEEEEEecCCC
Q 037642           12 FDAEE-TCYLLKGKVKVYPKGSSDWVEFGAG--------DLVTIPKGLSCTWDVSVAVDKYYKFESTSS   71 (74)
Q Consensus        12 ~~~~E-~~~vleG~~~~~~~~g~e~~~~~~G--------D~v~~p~g~~~~~~~~~~~~k~y~~~~~~~   71 (74)
                      .+..| .+++|+|.++++.++. +...+..-        |++++|+|.+.+...... .++|++.++..
T Consensus        44 ~~~~E~~vv~l~G~~~v~~~g~-~~~~l~~R~~vF~~~~d~lYvp~g~~~~i~a~~~-ae~~~~sapa~  110 (261)
T PF04962_consen   44 LERRELGVVNLGGKATVTVDGE-EFYELGGRESVFDGPPDALYVPRGTKVVIFASTD-AEFAVCSAPAH  110 (261)
T ss_dssp             CCSEEEEEEEESSSEEEEETTE-EEEEE-TTSSGGGS--EEEEE-TT--EEEEESST-EEEEEEEEE-S
T ss_pred             CCCcEEEEEEeCCEEEEEeCCc-eEEEecccccccCCCCcEEEeCCCCeEEEEEcCC-CEEEEEccccC
Confidence            33344 4566899999999985 46788887        999999999999988777 58999887654

KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.

>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]

Probab=96.34  E-value=0.0091  Score=41.15  Aligned_cols=52  Identities=21%  Similarity=0.205  Sum_probs=42.9

Q ss_pred             eEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEEEec
Q 037642           15 EETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFES   68 (74)
Q Consensus        15 ~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~~~   68 (74)
                      +.=.|||||.+.+++++  ..+.+++||.+.+.+-.+-..-..++-+-.|++++
T Consensus       204 EHGlyvLeGk~vYrLn~--dwv~V~aGD~mwm~A~cpQacyagG~g~frYLlyK  255 (264)
T COG3257         204 EHGLYVLEGKGVYRLNN--NWVPVEAGDYIWMGAYCPQACYAGGRGAFRYLLYK  255 (264)
T ss_pred             hcceEEEecceEEeecC--ceEEeecccEEEeeccChhhhccCCCCceEEEEEe
Confidence            44569999999999999  48999999999998887777767777777777665

>PLN02288 mannose-6-phosphate isomerase

Probab=96.23  E-value=0.011  Score=43.32  Aligned_cols=42  Identities=17%  Similarity=0.249  Sum_probs=33.6

Q ss_pred             cCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEE
Q 037642           12 FDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCT   53 (74)
Q Consensus        12 ~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~   53 (74)
                      .+...+++|++|++++...+++....+++|+++++|++....
T Consensus       352 ~~gp~Illv~~G~~~i~~~~~~~~~~l~~G~~~fv~a~~~~~  393 (394)
T PLN02288        352 VPGPSVFLVIEGEGVLSTGSSEDGTAAKRGDVFFVPAGTEIH  393 (394)
T ss_pred             CCCCEEEEEEcCEEEEecCCccceEEEeceeEEEEeCCCccc
Confidence            346789999999999987664223679999999999987654

>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A

Probab=96.11  E-value=0.022  Score=37.36  Aligned_cols=36  Identities=22%  Similarity=0.267  Sum_probs=24.7

Q ss_pred             eEEEECCCcEEEEcCCCeEEEEEe--e--eEEEEEEEecC
Q 037642           34 DWVEFGAGDLVTIPKGLSCTWDVS--V--AVDKYYKFEST   69 (74)
Q Consensus        34 e~~~~~~GD~v~~p~g~~~~~~~~--~--~~~k~y~~~~~   69 (74)
                      -...++|||+++||+|+.|.-+..  +  .+--.|-+..+
T Consensus       209 ~~~~l~pGD~LfiP~gWwH~V~~~~~~~~sisvn~w~~~~  248 (251)
T PF13621_consen  209 YEVVLEPGDVLFIPPGWWHQVENLSDDDLSISVNYWFRTP  248 (251)
T ss_dssp             EEEEEETT-EEEE-TT-EEEEEESTTSSCEEEEEEEEESS
T ss_pred             eEEEECCCeEEEECCCCeEEEEEcCCCCeEEEEEEEeccc
Confidence            347899999999999999999998  5  35445544443

...

>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]

Probab=96.08  E-value=0.051  Score=38.80  Aligned_cols=42  Identities=17%  Similarity=0.203  Sum_probs=35.2

Q ss_pred             ceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCC-CeEEEEEe
Q 037642           14 AEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKG-LSCTWDVS   57 (74)
Q Consensus        14 ~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g-~~~~~~~~   57 (74)
                      ...+.+|++|++++..++  +.+.+++|+.++||+. .+.+.+-.
T Consensus       260 ~~~il~v~eG~~~l~~~~--~~~~l~~G~s~~ipa~~~~~~i~g~  302 (312)
T COG1482         260 SFSILLVLEGEGTLIGGG--QTLKLKKGESFFIPANDGPYTIEGE  302 (312)
T ss_pred             CcEEEEEEcCeEEEecCC--EEEEEcCCcEEEEEcCCCcEEEEec
Confidence            578999999999999996  5799999999999998 55444433

>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=95.94  E-value=0.013  Score=41.99  Aligned_cols=46  Identities=13%  Similarity=0.134  Sum_probs=39.0

Q ss_pred             cCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEee
Q 037642           12 FDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSV   58 (74)
Q Consensus        12 ~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~   58 (74)
                      .....+-+|+||.+-++.-+| +...+++||+++.|++..|..-..+
T Consensus       110 HsqsAlRFvveG~Ga~T~VdG-er~~M~~GDfilTP~w~wHdHgn~g  155 (351)
T COG3435         110 HNQSALRFVVEGKGAYTVVDG-ERTPMEAGDFILTPAWTWHDHGNEG  155 (351)
T ss_pred             ccccceEEEEeccceeEeecC-ceeeccCCCEEEccCceeccCCCCC
Confidence            457889999999998888887 6899999999999999887765543

>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]

Probab=95.47  E-value=0.036  Score=43.25  Aligned_cols=42  Identities=21%  Similarity=0.579  Sum_probs=36.7

Q ss_pred             CcCCceEEEecC--ceEEEEEEecEEEEEeCCCceEEEECCCcEE
Q 037642            2 GCSPGKFQLKFD--AEETCYLLKGKVKVYPKGSSDWVEFGAGDLV   44 (74)
Q Consensus         2 ~~~pg~~~~~~~--~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v   44 (74)
                      +|.||..-||..  .|.+|+|++|+.++..++. -.-.++.||.|
T Consensus       575 H~APGDLlYHtGESvDaLcFvVsGSLEVIQDDE-VVAILGKGDVF  618 (971)
T KOG0501|consen  575 HCAPGDLLYHTGESVDALCFVVSGSLEVIQDDE-VVAILGKGDVF  618 (971)
T ss_pred             cCCCcceeeecCCccceEEEEEecceEEeecCc-EEEEeecCccc
Confidence            589999888876  5999999999999999995 46779999987

>PF02678 Pirin: Pirin; InterPro: IPR003829 This entry represents N-terminal domain of Pirin proteins from both eukaryotes and prokaryotes

Probab=94.77  E-value=0.29  Score=29.77  Aligned_cols=44  Identities=18%  Similarity=0.196  Sum_probs=36.9

Q ss_pred             ecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEE
Q 037642           11 KFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWD   55 (74)
Q Consensus        11 ~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~   55 (74)
                      |.+.+-+-||++|.+.-.+.-|+ ...+++||+-.+-+|.-...+
T Consensus        47 H~g~eivTyv~~G~~~H~Ds~G~-~~~l~~G~vq~m~AG~Gi~H~   90 (107)
T PF02678_consen   47 HRGFEIVTYVLEGELRHRDSLGN-RGVLRAGDVQWMTAGSGIVHS   90 (107)
T ss_dssp             ECSEEEEEEEEESEEEEEETTSE-EEEEETTEEEEEE-TTTEEEE
T ss_pred             CCCceEEEEEecCEEEEECCCCC-eeEeCCCeEEEEeCCCCceEE
Confidence            46778899999999999999884 689999999999999766554

The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 2VEC_A 1J1L_A 3ACL_A 2P17_A 1TQ5_A.

>PF05962 HutD: HutD; InterPro: IPR010282 This entry contains proteins of unknown function, which include HutD from Pseudomonas fluorescens and Ves from Escherichia coli K12

Probab=94.74  E-value=0.52  Score=30.97  Aligned_cols=66  Identities=12%  Similarity=0.139  Sum_probs=42.7

Q ss_pred             CceEEEecCceEEEEEEecE-EEEEeCCCceEEEECCCcEEEEcCCCeEEEE-EeeeEEEEEEEecCC
Q 037642            5 PGKFQLKFDAEETCYLLKGK-VKVYPKGSSDWVEFGAGDLVTIPKGLSCTWD-VSVAVDKYYKFESTS   70 (74)
Q Consensus         5 pg~~~~~~~~~E~~~vleG~-~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~-~~~~~~k~y~~~~~~   70 (74)
                      +|.|..--..+-+..+|+|. +.+..++..+...++|++.+.|+-+...+-. ..++++.+=++.+.+
T Consensus        45 ~g~FS~FpG~~R~l~~L~G~gl~L~~~~~~~~~~l~p~~~~~F~G~~~v~~~l~~G~~~dfNlM~r~~  112 (184)
T PF05962_consen   45 DGPFSDFPGYDRILTLLEGNGLRLTHDGQQEHTLLQPFQPFAFDGDWPVTSELLDGPVRDFNLMTRRG  112 (184)
T ss_dssp             SEEE---TT-EEEEEEEESS-EEEEETTCSE-EEE-BT--EEEETTS-EEEEESSS-EEEEEEEE-TT
T ss_pred             CCCCCCCCCCcEEEEEEeCCcEEEecCCCcceeccCCCCcEEcCCCCeEEEEECCCCEEEEEEEecCC
Confidence            34444334578899999999 9999998633466999999999999998888 456677776666554

HutD from P. fluorescens is a component of the histidine uptake and utilisation operon. HutD is operonic with the well characterised repressor protein HutC. Genetic analysis using transcriptional fusions (lacZ) and deletion mutants shows that hutD is necessary to maintain fitness in environments replete with histidine. HutD probably sets an upper bound on the level of hut operon transcription []. The mechanistic basis is unknown, but in silico molecular docking studies based on the crystal structure of HutD from Pseudomonas aeruginosa show that urocanate (the first breakdown product of histidine) docks with the active site of HutD.; PDB: 3ESG_A 1YLL_D.

>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes

Probab=94.59  E-value=0.52  Score=27.97  Aligned_cols=49  Identities=22%  Similarity=0.259  Sum_probs=36.6

Q ss_pred             ecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEe-eeEEEE
Q 037642           11 KFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVS-VAVDKY   63 (74)
Q Consensus        11 ~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~-~~~~k~   63 (74)
                      .....-+.||++|.+.+  ++.  ...+.+|++++|..|...+.+.. +..+-+
T Consensus        17 ~~~~~~~iyv~~G~~~v--~~~--~~~~~~~~~~~l~~g~~i~~~a~~~~a~~l   66 (104)
T PF05726_consen   17 PPGHNAFIYVLEGSVEV--GGE--EDPLEAGQLVVLEDGDEIELTAGEEGARFL   66 (104)
T ss_dssp             ETT-EEEEEEEESEEEE--TTT--TEEEETTEEEEE-SECEEEEEESSSSEEEE
T ss_pred             CCCCEEEEEEEECcEEE--CCC--cceECCCcEEEECCCceEEEEECCCCcEEE
Confidence            35678999999999644  553  26899999999999999999988 555433

The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.

>PRK15186 AraC family transcriptional regulator; Provisional

Probab=94.55  E-value=0.17  Score=35.54  Aligned_cols=47  Identities=11%  Similarity=0.157  Sum_probs=40.7

Q ss_pred             cCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeee
Q 037642           12 FDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVA   59 (74)
Q Consensus        12 ~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~   59 (74)
                      ....-++++..|.+.+..++| +++.+.++.++++|++..+.....+.
T Consensus        36 ~~~~~li~v~~G~~~i~~~~g-~~l~i~~p~~~~~p~~~~~~~~~~~~   82 (291)
T PRK15186         36 LLQSVLIKLTTGKISITTSSG-EYITASGPMLIFLAKDQTIHITMEET   82 (291)
T ss_pred             ecceEEEEeccceEEEEeCCC-ceEEeCCCeEEEEeCCcEEEEEeccc
Confidence            346789999999999999887 57999999999999999998765543

>PF04622 ERG2_Sigma1R: ERG2 and Sigma1 receptor like protein; InterPro: IPR006716 This family consists of the fungal C-8 sterol isomerase and mammalian sigma1 receptor

Probab=94.53  E-value=0.3  Score=33.27  Aligned_cols=47  Identities=19%  Similarity=0.353  Sum_probs=41.5

Q ss_pred             ceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeE
Q 037642           14 AEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAV   60 (74)
Q Consensus        14 ~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~   60 (74)
                      ++-.+.||+|++.--.++..+...+.|||...+|+|...+.+..+..
T Consensus       119 ad~y~tIL~G~~~~~~~g~~~~evy~pGd~~~l~rg~a~~y~m~~~t  165 (216)
T PF04622_consen  119 ADDYFTILSGEQWAWSPGSLEPEVYKPGDSHHLPRGEAKQYQMPPGT  165 (216)
T ss_pred             eeeEEEEEEEEEEEEcCCCCCceEeccCCEEEecCceEEEEEeCCCe
Confidence            68899999999999888876778899999999999999998887653

C-8 sterol isomerase (delta-8--delta-7 sterol isomerase), catalyses a reaction in ergosterol biosynthesis, which results in unsaturation at C-7 in the B ring of sterols []. Sigma 1 receptor is a low molecular mass mammalian protein located in the endoplasmic reticulum [], which interacts with endogenous steroid hormones, such as progesterone and testosterone []. It also binds the sigma ligands, which are a set of chemically unrelated drugs including haloperidol, pentazocine, and ditolylguanidine []. Sigma1 effectors are not well understood, but sigma1 agonists have been observed to affect NMDA receptor function, the alpha-adrenergic system and opioid analgesia.; GO: 0000247 C-8 sterol isomerase activity, 0006696 ergosterol biosynthetic process, 0005783 endoplasmic reticulum

>PF06719 AraC_N: AraC-type transcriptional regulator N-terminus; InterPro: IPR009594 This entry represents the N terminus of bacterial ARAC-type transcriptional regulators

Probab=94.23  E-value=0.34  Score=30.72  Aligned_cols=43  Identities=21%  Similarity=0.334  Sum_probs=39.2

Q ss_pred             ceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEee
Q 037642           14 AEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSV   58 (74)
Q Consensus        14 ~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~   58 (74)
                      ..-+|+|+.|+=.+.+++  +.+.+.+|+.++.+.+.+.+-++.+
T Consensus        23 ~p~i~~vlQG~K~~~~g~--~~~~Y~~g~~lv~~~~lPv~~~v~~   65 (155)
T PF06719_consen   23 EPSICIVLQGSKRVHLGD--QVFEYDAGQYLVSSVDLPVESEVVE   65 (155)
T ss_pred             CCeEEEEEeeeEEEEECC--ceEEecCCcEEEecCCCcEEEEEee
Confidence            578999999999999998  4799999999999999999999843

In Escherichia coli these regulate the L-arabinose operon through sensing the presence of arabinose, and when the sugar is present, transmitting this information from the arabinose-binding domains to the protein s DNA-binding domains []. This family might represent the N-terminal arm of the protein, which binds to the C-terminal DNA binding domains to hold them in a state where the protein prefers to loop and remain non-activating []. This domain is associated with the IPR000005 from INTERPRO domain.

>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors

Probab=94.09  E-value=0.16  Score=35.75  Aligned_cols=53  Identities=17%  Similarity=0.224  Sum_probs=33.1

Q ss_pred             eEEEecCc-eEEEEEEecEEEEEeCC---------------------CceEEEECCCcEEEEcCCCeEEEEEeee
Q 037642            7 KFQLKFDA-EETCYLLKGKVKVYPKG---------------------SSDWVEFGAGDLVTIPKGLSCTWDVSVA   59 (74)
Q Consensus         7 ~~~~~~~~-~E~~~vleG~~~~~~~~---------------------g~e~~~~~~GD~v~~p~g~~~~~~~~~~   59 (74)
                      .+..|+|. +-+++=++|+=.-++-.                     -...+.++|||+++||+|+.|.-...+.
T Consensus       127 g~~~H~D~~dvfvlQ~~G~K~W~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGD~LYlPrG~~H~~~~~~~  201 (319)
T PF08007_consen  127 GFGPHYDDHDVFVLQLEGRKRWRLYPPPDEPAPLYSDQPFKQLEEFEPVEEVVLEPGDVLYLPRGWWHQAVTTDP  201 (319)
T ss_dssp             ESECEE-SSEEEEEEEES-EEEEEE-SCCCTTTSSCE--TTTCG--STSEEEEE-TT-EEEE-TT-EEEEEESS-
T ss_pred             CccCEECCcccEEEECCceeEEEECCCCcccccccCCCCccccccCceeEEEEECCCCEEEECCCccCCCCCCCC
Confidence            45667764 66666678876655432                     0135889999999999999999998883

The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.

>PRK10202 ebgC cryptic beta-D-galactosidase subunit beta; Reviewed

Probab=93.35  E-value=0.55  Score=29.91  Aligned_cols=60  Identities=22%  Similarity=0.143  Sum_probs=41.2

Q ss_pred             CceEEEecCceEEEEEEecEEEEEe----------------------CCCceEEEECCCcEEEEcCCCeEEEEEeeeEEE
Q 037642            5 PGKFQLKFDAEETCYLLKGKVKVYP----------------------KGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDK   62 (74)
Q Consensus         5 pg~~~~~~~~~E~~~vleG~~~~~~----------------------~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k   62 (74)
                      +..|..|..+-.+.++|+|+=.+..                      +.+ ..+.++||++++|-++..|.---.+.+||
T Consensus        56 ~~~~E~Hr~YiDIq~~l~G~E~i~~~~~~~~~~~~~y~~e~D~~f~~~~~-~~v~l~~G~F~iffP~daH~P~~~~~ikK  134 (149)
T PRK10202         56 DALFTGHRRYFEVHYYLQGQQKIEYAPKETLQVVEYYRDETDREYLKGCG-ETVEVHEGQIVICDIHEAYRFICNNAVKK  134 (149)
T ss_pred             cccccccccEEEEEEEEeCeEEEEEEEcccCccccccCcccCeeeccCCC-cEEEeCCCeEEEECCcccccCCCCCcEEE
Confidence            3455667777888888888766542                      122 36788999999988888777655555666


Q ss_pred             EEE
Q 037642           63 YYK   65 (74)
Q Consensus        63 ~y~   65 (74)
                      .=+
T Consensus       135 ~Vv  137 (149)
T PRK10202        135 VVL  137 (149)
T ss_pred             EEE
Confidence            544

>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A

Probab=93.25  E-value=0.17  Score=35.20  Aligned_cols=51  Identities=12%  Similarity=0.101  Sum_probs=30.1

Q ss_pred             CceEEEEEEecEEEEEeCCCc-eEEEECCCcEEEEcCCCeEEEEEeeeEEEEEE
Q 037642           13 DAEETCYLLKGKVKVYPKGSS-DWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYK   65 (74)
Q Consensus        13 ~~~E~~~vleG~~~~~~~~g~-e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~   65 (74)
                      ..++-++||+|.+..  ++.+ +...|.+|..+++|+|..+.--..+.-...|+
T Consensus        55 ~~~~~~~Vi~G~~~~--~~~~a~~~~l~~Gsy~~~PaG~~h~~~~~~~~~~~~~  106 (251)
T PF14499_consen   55 NADYRGTVISGELHN--GDPKAAAMWLPAGSYWFQPAGEPHITAAEGETNLLFI  106 (251)
T ss_dssp             SS-EEEEEEESEEEE--TTEE-----E-TTEEEEE-TT-EEEETTS-EE-EEEE
T ss_pred             eeeEEEEEEEeEEEc--CCCcccceecCCCceEeccCCCceeeeccCccEEEEE
Confidence            478999999998665  3321 23559999999999997766555554435565

>PF09313 DUF1971: Domain of unknown function (DUF1971); InterPro: IPR015392 This uncharacterised domain is predominantly found in bacterial Tellurite resistance proteins

Probab=92.71  E-value=1.2  Score=25.94  Aligned_cols=46  Identities=17%  Similarity=0.077  Sum_probs=36.8

Q ss_pred             ceEEEEEEecEEEEEeCCC-----ceEEEECCCcEEEEcCCCeEEEEEeee
Q 037642           14 AEETCYLLKGKVKVYPKGS-----SDWVEFGAGDLVTIPKGLSCTWDVSVA   59 (74)
Q Consensus        14 ~~E~~~vleG~~~~~~~~g-----~e~~~~~~GD~v~~p~g~~~~~~~~~~   59 (74)
                      ......||+|++.+...+.     .+...+.+|+..+|++...|.-+-..+
T Consensus        25 tWg~l~Vl~G~L~f~~~~~~~~~~~~~~~~~~~~~~~i~Pq~wH~V~p~s~   75 (82)
T PF09313_consen   25 TWGKLRVLEGELKFYGLDEEGEEPEEEVFIPAGQPPVIEPQQWHRVEPLSD   75 (82)
T ss_dssp             EEEEEEEEESEEEEEEESSTT-SESEEEEEETTEEEEE-TT-EEEEEESST
T ss_pred             eEEEEEEEeeEEEEEEECCCCCceeEEEEeCCCCCceeCCCceEEEEECCC
Confidence            4677899999999997654     356889999999999999999886665

; PDB: 3BB6_C 3M70_A 3DL3_I.

>KOG1417 consensus Homogentisate 1,2-dioxygenase [Amino acid transport and metabolism]

Probab=92.27  E-value=0.42  Score=34.66  Aligned_cols=49  Identities=14%  Similarity=0.203  Sum_probs=41.8

Q ss_pred             ecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEE
Q 037642           11 KFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVD   61 (74)
Q Consensus        11 ~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~   61 (74)
                      ..+.+-++.=..|...|+.+-|  ...+.|+++.+||+|.+..-++.++.|
T Consensus       152 NsDGDFLiVPQ~G~L~I~TEfG--rllV~P~EI~VIpqG~RFsi~v~~~sR  200 (446)
T KOG1417|consen  152 NSDGDFLIVPQQGRLWITTEFG--RLLVTPNEIAVIPQGIRFSIDVPGPSR  200 (446)
T ss_pred             cCCCCEEEecccCcEEEEeecc--ceeecccceEEeecccEEEEecCCCCc
Confidence            3456777777889999999997  489999999999999999999988753

>PRK11396 hypothetical protein; Provisional

Probab=91.67  E-value=2  Score=28.81  Aligned_cols=64  Identities=11%  Similarity=0.073  Sum_probs=46.0

Q ss_pred             ceEEEecCceEEEEEEec-EEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeee-E-EEEEEEecCC
Q 037642            6 GKFQLKFDAEETCYLLKG-KVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVA-V-DKYYKFESTS   70 (74)
Q Consensus         6 g~~~~~~~~~E~~~vleG-~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~-~-~k~y~~~~~~   70 (74)
                      |.|..-...+-++.+|+| .+.+..++. ....+++++.+.|+.+.....+..+. + +.+=++.+.+
T Consensus        47 GpFS~FpGidR~i~lL~G~g~~L~~~~~-~~~~l~~~~p~~F~Gd~~v~a~L~~G~v~~dfNvM~rr~  113 (191)
T PRK11396         47 GEFSLFPGMERIVTLLEGGEMFLESADR-FNHTLKPLQPFAFAADQVVKAKLTAGQMSMDFNIMTRLD  113 (191)
T ss_pred             CCCCCCCCccEEEEEEECCCEEEeeCCc-cceecCCCCCeEeCCCCeeEEEECCCCeEEEEEEEecCC
Confidence            334333447899999998 677777765 35678999999999999999987654 4 5455555443

>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase

Probab=91.43  E-value=2.8  Score=27.54  Aligned_cols=57  Identities=21%  Similarity=0.180  Sum_probs=42.5

Q ss_pred             CceEEEEEEecEEEEEeCCC---c------eEEEECC--CcEEEEcCCCeEEEEEeee-EEEEEEEecC
Q 037642           13 DAEETCYLLKGKVKVYPKGS---S------DWVEFGA--GDLVTIPKGLSCTWDVSVA-VDKYYKFEST   69 (74)
Q Consensus        13 ~~~E~~~vleG~~~~~~~~g---~------e~~~~~~--GD~v~~p~g~~~~~~~~~~-~~k~y~~~~~   69 (74)
                      .+..++.|+.|.+...+-|-   +      ..+.|.+  +-+++||+|.-|-+.+.+. ..-.|+++.+
T Consensus        66 ~q~Klv~c~~G~i~dV~VDlR~~SpTfG~~~~~~L~~~~~~~l~IP~G~aHGF~~L~d~a~v~Y~~~~~  134 (176)
T TIGR01221        66 PQGKLVRVLRGEVFDVAVDLRRNSPTFGKWVGVLLSAENKRQLWIPEGFAHGFVVLSDEAEFLYKCTDY  134 (176)
T ss_pred             CCceEEEEccCCEEEEEEECCCCcCCCCeEEEEEECCCCCCEEEeCCcceeEEEEcCCCeEEEEeCCCC
Confidence            37999999999998775322   1      2356666  6699999999999998654 6677776544

This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen

>KOG3995 consensus 3-hydroxyanthranilate oxygenase HAAO [Amino acid transport and metabolism]

Probab=91.23  E-value=0.29  Score=33.80  Aligned_cols=45  Identities=20%  Similarity=0.339  Sum_probs=35.2

Q ss_pred             EEecC-ceEEEEEEecEEEEEeCCC--ceEEEECCCcEEEEcCCCeEE
Q 037642            9 QLKFD-AEETCYLLKGKVKVYPKGS--SDWVEFGAGDLVTIPKGLSCT   53 (74)
Q Consensus         9 ~~~~~-~~E~~~vleG~~~~~~~~g--~e~~~~~~GD~v~~p~g~~~~   53 (74)
                      .+|.+ .+|++|-+.|.+.+.+-+.  .+.+.++.||++++|+..+|.
T Consensus        47 dyHieegeE~FyQ~KGdMvLKVie~g~~rDivI~qGe~flLParVpHS   94 (279)
T KOG3995|consen   47 DYHIEEGEEVFYQLKGDMVLKVLEQGKHRDVVIRQGEIFLLPARVPHS   94 (279)
T ss_pred             ccccCCcchhheeecCceEEeeeccCcceeeEEecCcEEEeccCCCCC
Confidence            46654 5899999999999886332  235789999999999988764

>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice []

Probab=91.03  E-value=0.66  Score=27.02  Aligned_cols=25  Identities=20%  Similarity=0.054  Sum_probs=17.4

Q ss_pred             EEEECCCcEEEEcCCCeEEEEEeee
Q 037642           35 WVEFGAGDLVTIPKGLSCTWDVSVA   59 (74)
Q Consensus        35 ~~~~~~GD~v~~p~g~~~~~~~~~~   59 (74)
                      .+.-+|||+|++|+|+-|.-...+.
T Consensus        82 ~~~Q~~Ge~V~i~pg~~H~v~n~g~  106 (114)
T PF02373_consen   82 RFVQKPGEFVFIPPGAYHQVFNLGD  106 (114)
T ss_dssp             EEEEETT-EEEE-TT-EEEEEESSS
T ss_pred             cceECCCCEEEECCCceEEEEeCCc
Confidence            4678999999999999887665554

There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....

>PF00908 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimerase; InterPro: IPR000888 Deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-d-hexulose 3, 5-epimerase (RmlC, 5

Probab=89.93  E-value=4  Score=26.76  Aligned_cols=55  Identities=18%  Similarity=0.224  Sum_probs=39.6

Q ss_pred             ceEEEEEEecEEEEEeCCC---------ceEEEECCCc--EEEEcCCCeEEEEEeee-EEEEEEEec
Q 037642           14 AEETCYLLKGKVKVYPKGS---------SDWVEFGAGD--LVTIPKGLSCTWDVSVA-VDKYYKFES   68 (74)
Q Consensus        14 ~~E~~~vleG~~~~~~~~g---------~e~~~~~~GD--~v~~p~g~~~~~~~~~~-~~k~y~~~~   68 (74)
                      +..++.|+.|.+...+-+-         -..+.|.+++  .++||+|.-|-+.+.+. ..-.|.+..
T Consensus        67 q~Klv~~~~G~i~dV~vDlR~~SpTfg~~~~~~Ls~~n~~~l~IP~G~aHGf~~l~d~a~v~Y~~t~  133 (176)
T PF00908_consen   67 QAKLVRCLRGEIFDVAVDLRKGSPTFGKWVSVELSAENPRQLYIPPGVAHGFQTLEDDAEVLYKVTN  133 (176)
T ss_dssp             EEEEEEEEESEEEEEEEE-BTTSTTTT-EEEEEEETTT--EEEE-TTEEEEEEESSSEEEEEEEESS
T ss_pred             CCcEEEEecCeEEEEEEECCCCCCCCCEEEEEEeCccccCEEEeCCcceeeEEeccCceEEEEecCC
Confidence            4789999999887765321         1346677765  79999999999998886 456666543

1.3.13 from EC) is involved in the biosynthesis of dTDP-l-rhamnose, which is an essential component of the bacterial cell wall, converting dTDP-4-keto-6-deoxy-D-glucose to dTDP-4-keto-L-rhamnose. The crystal structure of RmlC from Methanobacterium thermoautotrophicum was determined in the presence and absence of a substrate analogue. RmlC is a homodimer comprising a central jelly roll motif, which extends in two directions into longer beta-sheets. Binding of dTDP is stabilised by ionic interactions to the phosphate group and by a combination of ionic and hydrophobic interactions with the base. The active site, which is located in the centre of the jelly roll, is formed by residues that are conserved in all known RmlC sequence homologues. The active site is lined with a number of charged residues and a number of residues with hydrogen-bonding potentials, which together comprise a potential network for substrate binding and catalysis. The active site is also lined with aromatic residues which provide favorable environments for the base moiety of dTDP and potentially for the sugar moiety of the substrate [].; GO: 0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity, 0009103 lipopolysaccharide biosynthetic process; PDB: 1EPZ_A 1EP0_A 1NXM_A 1NZC_D 2IXL_C 1NYW_B 2IXC_D 1PM7_B 1UPI_A 3RYK_B ....

>COG1741 Pirin-related protein [General function prediction only]

Probab=89.42  E-value=1.7  Score=30.55  Aligned_cols=45  Identities=16%  Similarity=0.161  Sum_probs=38.8

Q ss_pred             ecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEE
Q 037642           11 KFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDV   56 (74)
Q Consensus        11 ~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~   56 (74)
                      |.+.+-+-|+|+|+++-++..|+ ...++|||+-.+-+|.-...+=
T Consensus        62 Hrg~etvTyvl~G~i~HrDS~Gn-~~~i~pGdvqwMTAG~GI~HSE  106 (276)
T COG1741          62 HRGLETVTYVLDGEIEHRDSLGN-KGVIRPGDVQWMTAGSGIVHSE  106 (276)
T ss_pred             CCCcEEEEEEEccEEEEeecCCc-eeeecccceeEEcCCCceeecc
Confidence            45677888999999999999985 7999999999999998776653

>COG2731 EbgC Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]

Probab=89.41  E-value=2.6  Score=27.31  Aligned_cols=59  Identities=20%  Similarity=0.164  Sum_probs=42.3

Q ss_pred             ceEEEecCceEEEEEEecEEEEEeC------------------------CCceEEEECCCcEEEEcCCCeEEEEE----e
Q 037642            6 GKFQLKFDAEETCYLLKGKVKVYPK------------------------GSSDWVEFGAGDLVTIPKGLSCTWDV----S   57 (74)
Q Consensus         6 g~~~~~~~~~E~~~vleG~~~~~~~------------------------~g~e~~~~~~GD~v~~p~g~~~~~~~----~   57 (74)
                      +.+..|..+-.+.++|+|.=.+...                        +. ..+++.||++++|=+|..|.-.+    .
T Consensus        61 ~~~E~HrkYiDiqill~G~E~i~~s~~~~~~~~e~y~~e~Di~~~~~~~~e-~~v~L~~G~faiFfP~e~H~P~c~~~~~  139 (154)
T COG2731          61 KKFELHRKYIDIQILLKGQEGIEYSPKETAQVKEDYDEEKDIIFYKGIEDE-STVELNPGMFAIFFPGEPHRPGCNVGVP  139 (154)
T ss_pred             cchhhhhheEEEEEEEeceeeeEEccCcCCccccccccccCEEeecCCccc-eEEEeCCCCEEEECCCCccccccccCCc
Confidence            3456677788899999998665531                        22 56899999999997777766553    4


Q ss_pred             eeEEEEEE
Q 037642           58 VAVDKYYK   65 (74)
Q Consensus        58 ~~~~k~y~   65 (74)
                      +++||+-+
T Consensus       140 ~~IkKvVv  147 (154)
T COG2731         140 EPIKKVVV  147 (154)
T ss_pred             ceeEEEEE
Confidence            67887654

>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length

Probab=89.38  E-value=2.9  Score=28.76  Aligned_cols=44  Identities=16%  Similarity=0.286  Sum_probs=29.2

Q ss_pred             eEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeE
Q 037642           15 EETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAV   60 (74)
Q Consensus        15 ~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~   60 (74)
                      ..+...+.|.-.....++  .+.|.||+.+.|++|.-|.|......
T Consensus       137 ~~v~V~~DG~~~t~~aG~--~l~L~PGESiTL~Pg~yH~Fw~e~g~  180 (225)
T PF07385_consen  137 TDVTVPVDGIRRTVPAGT--QLRLNPGESITLPPGIYHWFWGEGGD  180 (225)
T ss_dssp             S-EEEEETTEEEEE-TT---EEEE-TT-EEEE-TTEEEEEEE-TTS
T ss_pred             CCeEEecCCcEEEecCCc--eEEeCCCCeEeeCCCCeeeEEecCCC
Confidence            345566677777666664  69999999999999999999876654

The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.

>COG3717 KduI 5-keto 4-deoxyuronate isomerase [Carbohydrate transport and metabolism]

Probab=89.36  E-value=1.4  Score=30.83  Aligned_cols=56  Identities=18%  Similarity=0.277  Sum_probs=42.3

Q ss_pred             CceEEEEE-EecEEEEEeCCCceEEEECCCcEEEEcCC-CeEEEEEeee--EEEEEEEecCC
Q 037642           13 DAEETCYL-LKGKVKVYPKGSSDWVEFGAGDLVTIPKG-LSCTWDVSVA--VDKYYKFESTS   70 (74)
Q Consensus        13 ~~~E~~~v-leG~~~~~~~~g~e~~~~~~GD~v~~p~g-~~~~~~~~~~--~~k~y~~~~~~   70 (74)
                      +..|+-.| +-|.++|+.+|  +.+++.+.|++++-.| ...+|.-...  -.|||+..+|-
T Consensus        74 eRRElgiINIG~~G~i~v~g--~~y~l~~rd~LYvg~G~~dv~F~s~d~~~pAkFY~~sapA  133 (278)
T COG3717          74 ERRELGIINIGGPGTITVDG--QEYELGHRDALYVGMGAKDVTFSSIDGAAPAKFYYVSAPA  133 (278)
T ss_pred             eeeeeeEEeeCCCceEEECC--EEEEeccccEEEEecCccceEEeccCCCCcceEEEeeccc
Confidence            45565554 56778888888  5799999999999999 5666766553  35899988874

>PHA02984 hypothetical protein; Provisional

Probab=88.62  E-value=5.5  Score=28.28  Aligned_cols=49  Identities=10%  Similarity=-0.047  Sum_probs=38.6

Q ss_pred             ecCceEEEEEEecEEEEEeCCCc--eEEEECCCcEEEEcCCCeEEEEEeee
Q 037642           11 KFDAEETCYLLKGKVKVYPKGSS--DWVEFGAGDLVTIPKGLSCTWDVSVA   59 (74)
Q Consensus        11 ~~~~~E~~~vleG~~~~~~~~g~--e~~~~~~GD~v~~p~g~~~~~~~~~~   59 (74)
                      ...+.-|..+|+|++.+....++  -+..+++||+|.+--+.+|.-.+...
T Consensus        90 esnEy~FvlCl~G~~~I~~~~~~~~is~~I~kGeaf~md~~t~h~i~T~~k  140 (286)
T PHA02984         90 ESNEYMFVLCLNGKTSIECFNKGSKITNTIKKGEAFTLNLKTKYVTTTKDK  140 (286)
T ss_pred             eeccEEEEEEcCCeEEEEEecCCceeeeEEecCceEEEEccceEEEEeCCC
Confidence            34466788899999999875553  34679999999999999998887744

>PF05962 HutD: HutD; InterPro: IPR010282 This entry contains proteins of unknown function, which include HutD from Pseudomonas fluorescens and Ves from Escherichia coli K12

Probab=88.36  E-value=2.3  Score=27.94  Aligned_cols=39  Identities=23%  Similarity=0.379  Sum_probs=26.9

Q ss_pred             cCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeE
Q 037642           12 FDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSC   52 (74)
Q Consensus        12 ~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~   52 (74)
                      ....-++|+++|.+.+..++  +.+.+.+||.+.+-.....
T Consensus       133 ~~~~~l~~~~~G~~~i~~~~--~~~~L~~~d~l~~~~~~~~  171 (184)
T PF05962_consen  133 AASTVLVYVLEGAWSITEGG--NCISLSAGDLLLIDDEEDL  171 (184)
T ss_dssp             --SEEEEEESSS-EEECCCE--EEEEE-TT-EEEEESEECE
T ss_pred             CCCEEEEEEeeCcEEEecCC--CceEcCCCCEEEEeCCCce
Confidence            34567789999987777664  4799999999999885444

HutD from P. fluorescens is a component of the histidine uptake and utilisation operon. HutD is operonic with the well characterised repressor protein HutC. Genetic analysis using transcriptional fusions (lacZ) and deletion mutants shows that hutD is necessary to maintain fitness in environments replete with histidine. HutD probably sets an upper bound on the level of hut operon transcription []. The mechanistic basis is unknown, but in silico molecular docking studies based on the crystal structure of HutD from Pseudomonas aeruginosa show that urocanate (the first breakdown product of histidine) docks with the active site of HutD.; PDB: 3ESG_A 1YLL_D.

>PRK15044 transcriptional regulator SirC; Provisional

Probab=88.29  E-value=1.9  Score=30.74  Aligned_cols=45  Identities=20%  Similarity=0.154  Sum_probs=39.3

Q ss_pred             CceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEee
Q 037642           13 DAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSV   58 (74)
Q Consensus        13 ~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~   58 (74)
                      ...-++.+-.|..+++++.| |.+.+.+-+++++|+|........+
T Consensus        39 ~~~~l~~~~~g~~~~~~~~~-~~~~~~~~~~~~l~k~~~i~~~~~~   83 (295)
T PRK15044         39 ANCLLFKLNKGSLRIENEFG-EFIEQSAPCLFLLEKDQTITLSMSE   83 (295)
T ss_pred             cceEEEEEecCeEEEEecCC-ceEEecCCeeEEEeCCCEEEEeHhh
Confidence            35677888999999999999 7999999999999999998876544

>TIGR00218 manA mannose-6-phosphate isomerase, class I

Probab=87.74  E-value=0.34  Score=33.85  Aligned_cols=20  Identities=20%  Similarity=0.589  Sum_probs=18.0

Q ss_pred             EEEECCCcEEEEcCCCeEEE
Q 037642           35 WVEFGAGDLVTIPKGLSCTW   54 (74)
Q Consensus        35 ~~~~~~GD~v~~p~g~~~~~   54 (74)
                      .+.++|||+++||+|..|.-
T Consensus       152 ~v~v~~Gd~i~ipaGt~HA~  171 (302)
T TIGR00218       152 RIKLKPGDFFYVPSGTPHAY  171 (302)
T ss_pred             ccccCCCCEEEeCCCCcccc
Confidence            47899999999999999973

The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.

>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]

Probab=87.36  E-value=0.58  Score=33.52  Aligned_cols=21  Identities=19%  Similarity=0.403  Sum_probs=18.7

Q ss_pred             EEEECCCcEEEEcCCCeEEEE
Q 037642           35 WVEFGAGDLVTIPKGLSCTWD   55 (74)
Q Consensus        35 ~~~~~~GD~v~~p~g~~~~~~   55 (74)
                      .+.++|||++++|+|+.|..-
T Consensus       159 ~v~lkpGe~~fl~Agt~HA~~  179 (312)
T COG1482         159 RVKLKPGEAFFLPAGTPHAYL  179 (312)
T ss_pred             EEecCCCCEEEecCCCceeec
Confidence            588999999999999999753

>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=87.03  E-value=2  Score=34.09  Aligned_cols=55  Identities=15%  Similarity=0.364  Sum_probs=41.1

Q ss_pred             cCCceEEEec--CceEEEEEEecEEEEEeCCC---ceEEEECCCcEEE---------EcCCCeEEEEEeee
Q 037642            3 CSPGKFQLKF--DAEETCYLLKGKVKVYPKGS---SDWVEFGAGDLVT---------IPKGLSCTWDVSVA   59 (74)
Q Consensus         3 ~~pg~~~~~~--~~~E~~~vleG~~~~~~~~g---~e~~~~~~GD~v~---------~p~g~~~~~~~~~~   59 (74)
                      ++||.+-.+-  ...++++|++|.+.+...++   .....+++||++=         +|.  +.+-++.+.
T Consensus       447 f~pge~iireGd~v~~myFI~rG~le~~~~~~g~~~~~~~L~~Gd~~GeEl~~~~~~~p~--t~TVralt~  515 (727)
T KOG0498|consen  447 FTPGEYIIREGDPVTDMYFIVRGSLESITTDGGGFFVVAILGPGDFFGEELLTWCLDLPQ--TRTVRALTY  515 (727)
T ss_pred             cCCCCeEEecCCccceeEEEEeeeEEEEEccCCceEEEEEecCCCccchHHHHHHhcCCC--Cceeehhhh
Confidence            6788886664  35999999999999998774   2357899999987         777  444444443

>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]

Probab=86.88  E-value=3.4  Score=22.27  Aligned_cols=63  Identities=17%  Similarity=0.196  Sum_probs=39.2

Q ss_pred             CCceEEEec--CceEEEEEEecEEEEEeCCCc-e---EEEECCCcEEEE-----cCCCeEEEEEeeeEEEEEEEe
Q 037642            4 SPGKFQLKF--DAEETCYLLKGKVKVYPKGSS-D---WVEFGAGDLVTI-----PKGLSCTWDVSVAVDKYYKFE   67 (74)
Q Consensus         4 ~pg~~~~~~--~~~E~~~vleG~~~~~~~~g~-e---~~~~~~GD~v~~-----p~g~~~~~~~~~~~~k~y~~~   67 (74)
                      .+|..-+..  ..+.+++|++|.+.+...+.. +   ...+.+||++-.     ......+..+.+++ .+|.+.
T Consensus         5 ~~g~~i~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~-~~~~i~   78 (91)
T PF00027_consen    5 KKGEVIYRQGDPCDHIYIILSGEVKVSSINEDGKEQIIFFLGPGDIFGEIELLTGKPSPFTVIALTDS-EVLRIP   78 (91)
T ss_dssp             STTEEEEETTSBESEEEEEEESEEEEEEETTTSEEEEEEEEETTEEESGHHHHHTSBBSSEEEESSSE-EEEEEE
T ss_pred             CCCCEEEeCCCcCCEEEEEEECceEEEeceecceeeeecceeeeccccceeecCCCccEEEEEEccCE-EEEEEe
Confidence            355554443  368999999999999864432 2   246889998743     22345555555565 455544

The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....

>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]

Probab=85.01  E-value=7.7  Score=27.23  Aligned_cols=58  Identities=22%  Similarity=0.336  Sum_probs=41.7

Q ss_pred             CceEEEE-EEecEEEEEeCCCc--------eEEEECCCcEEEEcCCCeEEEEEeeeEEEEEEEecCCC
Q 037642           13 DAEETCY-LLKGKVKVYPKGSS--------DWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFESTSS   71 (74)
Q Consensus        13 ~~~E~~~-vleG~~~~~~~~g~--------e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~~~~~~   71 (74)
                      ...|.|+ ++.|.+++...+..        ..++=+|=|.|++|+|...+.+....+ .+-++++|..
T Consensus        47 ~~~E~clV~v~Gk~~vs~~g~~f~~iG~R~SvFe~~p~~~vYvp~g~~~~vtA~t~~-~vAvC~AP~~  113 (270)
T COG3718          47 GDRERCLVLVTGKATVSAHGSTFGEIGTRMSVFERKPPDSVYVPAGSAFSVTATTDL-EVAVCSAPGK  113 (270)
T ss_pred             CCceEEEEEEeeeEEEeeccchHhhcccccccccCCCCCeEEecCCceEEEEeecce-EEEEEeCCCC
Confidence            3455555 57999999987741        112223669999999999888887776 6777888763

>PRK15131 mannose-6-phosphate isomerase; Provisional

Probab=84.79  E-value=1.1  Score=32.82  Aligned_cols=20  Identities=10%  Similarity=0.210  Sum_probs=18.0

Q ss_pred             EEEECCCcEEEEcCCCeEEE
Q 037642           35 WVEFGAGDLVTIPKGLSCTW   54 (74)
Q Consensus        35 ~~~~~~GD~v~~p~g~~~~~   54 (74)
                      .+.++|||++++|+|..|..
T Consensus       238 ~v~l~pGeaifipAg~~HAy  257 (389)
T PRK15131        238 VVKLNPGEAMFLFAETPHAY  257 (389)
T ss_pred             EEEeCCCCEEEeCCCCCeEE
Confidence            58899999999999999874

>PF04074 DUF386: Domain of unknown function (DUF386); InterPro: IPR004375 This family consists of conserved hypothetical proteins, about 150 amino acids in length, with no known function

Probab=83.98  E-value=8.3  Score=24.23  Aligned_cols=60  Identities=17%  Similarity=0.205  Sum_probs=34.3

Q ss_pred             ceEEEecCceEEEEEEecEEEEEe-C----------------------C-CceEEEECCCcEEEEcCCCeEEEE--Ee--
Q 037642            6 GKFQLKFDAEETCYLLKGKVKVYP-K----------------------G-SSDWVEFGAGDLVTIPKGLSCTWD--VS--   57 (74)
Q Consensus         6 g~~~~~~~~~E~~~vleG~~~~~~-~----------------------~-g~e~~~~~~GD~v~~p~g~~~~~~--~~--   57 (74)
                      ..|..|...--++++|+|+=.+.. .                      + ....+.++||+.++|-|+..|.=.  +.  
T Consensus        61 ~~~E~HrkyiDiq~~l~G~E~i~~~~~~~~~~~~~~yd~~~D~~f~~~~~~~~~i~l~~g~f~iffP~d~H~p~~~~~~~  140 (153)
T PF04074_consen   61 RRFESHRKYIDIQYVLEGEERIGWSADIEDLEVVQPYDEEKDIAFYEDGKNESFITLKPGDFAIFFPEDAHRPGCAVDEP  140 (153)
T ss_dssp             S-EEE-SSEEEEEEEEES-EEEEEE-S---GGGS---BTTTTBEEES--TTEEEEEE-TTEEEEE-TT--EEEEE-BTT-
T ss_pred             cceeeeccEEEEEeeccccEEEEEEcCcccCcccccCCCCCCEEEecCCCCceEEEEcCCEEEEECCCccccccccCCCC
Confidence            346778888889999999876665 1                      1 112467999999999888888833  33  


Q ss_pred             eeEEEEEE
Q 037642           58 VAVDKYYK   65 (74)
Q Consensus        58 ~~~~k~y~   65 (74)
                      +++||.=+
T Consensus       141 ~~v~K~V~  148 (153)
T PF04074_consen  141 EPVRKVVF  148 (153)
T ss_dssp             -B-EEEEE
T ss_pred             ceEEEEEE
Confidence            35666543

The family is restricted to the bacteria. It includes three members in Escherichia coli (strain K12) and three in Streptococcus pneumoniae.; PDB: 1S4C_B 1JOP_B.

>PRK00364 groES co-chaperonin GroES; Reviewed

Probab=83.95  E-value=2.9  Score=24.76  Aligned_cols=23  Identities=17%  Similarity=0.127  Sum_probs=17.5

Q ss_pred             EEEECCCcEEEEcCCCeEEEEEe
Q 037642           35 WVEFGAGDLVTIPKGLSCTWDVS   57 (74)
Q Consensus        35 ~~~~~~GD~v~~p~g~~~~~~~~   57 (74)
                      +..+++||.|+|++......+..
T Consensus        56 ~~~vk~GD~Vlf~~~~g~ev~~~   78 (95)
T PRK00364         56 PLDVKVGDKVLFGKYAGTEVKID   78 (95)
T ss_pred             ecccCCCCEEEEcCCCCeEEEEC
Confidence            45699999999998766555553

>KOG3706 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.94  E-value=1.1  Score=34.40  Aligned_cols=28  Identities=25%  Similarity=0.363  Sum_probs=23.4

Q ss_pred             EECCCcEEEEcCCCeEEEEEeeeEEEEE
Q 037642           37 EFGAGDLVTIPKGLSCTWDVSVAVDKYY   64 (74)
Q Consensus        37 ~~~~GD~v~~p~g~~~~~~~~~~~~k~y   64 (74)
                      -++|||+++||.|.-|+.++.+.+.-+-
T Consensus       384 vle~GDllYfPRG~IHQA~t~~~vHSlH  411 (629)
T KOG3706|consen  384 VLEPGDLLYFPRGTIHQADTPALVHSLH  411 (629)
T ss_pred             hcCCCcEEEecCcceeeccccchhceeE
Confidence            4899999999999999999888654433

>PHA02890 hypothetical protein; Provisional

Probab=83.45  E-value=13  Score=26.22  Aligned_cols=47  Identities=13%  Similarity=-0.026  Sum_probs=37.4

Q ss_pred             EecCceEEEEEEecEEEEEeCCCc--eEEEECCCcEEEEcCCCeEEEEE
Q 037642           10 LKFDAEETCYLLKGKVKVYPKGSS--DWVEFGAGDLVTIPKGLSCTWDV   56 (74)
Q Consensus        10 ~~~~~~E~~~vleG~~~~~~~~g~--e~~~~~~GD~v~~p~g~~~~~~~   56 (74)
                      +...+.-|+.+|+|++.+....+.  -+..+++||+|.+--+.+|.-.+
T Consensus        88 ~eSnEy~FVlCL~Gs~~In~~~~d~~iS~~I~kGeaF~mdv~t~H~i~T  136 (278)
T PHA02890         88 MKKIECFFVACIEGSCKINVNIGDREISDHIHENQGFIMDVGLDHAIDS  136 (278)
T ss_pred             EeeccEEEEEEeCCeEEEEEecCCceeeeeeecCceEEEEccceEEEEc
Confidence            334466788899999999875542  34679999999999999998876

>PRK13918 CRP/FNR family transcriptional regulator; Provisional

Probab=83.35  E-value=7.2  Score=24.74  Aligned_cols=52  Identities=6%  Similarity=-0.003  Sum_probs=30.8

Q ss_pred             eEEEEEEecEEEEEe--CCCceE--EEECCCcEEEEc----CCCeEEEEEeeeEEEEEEEe
Q 037642           15 EETCYLLKGKVKVYP--KGSSDW--VEFGAGDLVTIP----KGLSCTWDVSVAVDKYYKFE   67 (74)
Q Consensus        15 ~E~~~vleG~~~~~~--~~g~e~--~~~~~GD~v~~p----~g~~~~~~~~~~~~k~y~~~   67 (74)
                      +.+++|++|.+.+..  .+|.+.  ..+.|||++-.+    ...+.+....+++ .++.++
T Consensus        27 ~~~y~I~~G~vr~~~~~~~G~e~~l~~~~~Gd~~G~~~~~~~~~~~~~~A~~~~-~v~~i~   86 (202)
T PRK13918         27 DMLYRVRSGLVRLHTVDDEGNALTLRYVRPGEYFGEEALAGAERAYFAEAVTDS-RIDVLN   86 (202)
T ss_pred             CeEEEEEeeEEEEEEECCCCCEEEEEEecCCCeechHHhcCCCCCceEEEcCce-EEEEEE
Confidence            679999999998865  344322  235899987443    2233444445554 334443

>cd00320 cpn10 Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts

Probab=81.75  E-value=3.5  Score=24.29  Aligned_cols=31  Identities=19%  Similarity=0.246  Sum_probs=21.5

Q ss_pred             EEEECCCcEEEEcCCCeEEEEEeeeEEEEEEEe
Q 037642           35 WVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFE   67 (74)
Q Consensus        35 ~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~~   67 (74)
                      +..+++||.|+||+......+..+  .+..+++
T Consensus        55 ~~~vk~GD~Vl~~~~~g~~v~~~~--~~y~i~~   85 (93)
T cd00320          55 PLSVKVGDKVLFPKYAGTEVKLDG--EEYLILR   85 (93)
T ss_pred             cccccCCCEEEECCCCceEEEECC--EEEEEEE
Confidence            467999999999997765555533  3444444

It forms heptameric rings with a dome-like structure, forming a lid to the large cavity of the tetradecameric cpn60 cylinder and thereby tightly regulating release and binding of proteins to the cpn60 surface.

>COG3097 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=81.57  E-value=1.7  Score=26.37  Aligned_cols=37  Identities=16%  Similarity=0.217  Sum_probs=28.7

Q ss_pred             EEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEE
Q 037642           19 YLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDV   56 (74)
Q Consensus        19 ~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~   56 (74)
                      -||.|+-++++.+.+ +..++|||.+.+-......+-+
T Consensus        15 dilagrKTITIRD~S-EShf~~g~vlrV~r~Ed~~~fc   51 (106)
T COG3097          15 DILAGRKTITIRDKS-ESHFKPGDVLRVGRFEDDRYFC   51 (106)
T ss_pred             HHhCCCceEEEeccc-hhcCCCCCEEEEEEecCCcEEE
Confidence            378999999999875 5899999999876555544443

>PRK04980 hypothetical protein; Provisional

Probab=80.03  E-value=2.9  Score=25.41  Aligned_cols=45  Identities=16%  Similarity=0.169  Sum_probs=31.6

Q ss_pred             EEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEE
Q 037642           19 YLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYY   64 (74)
Q Consensus        19 ~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y   64 (74)
                      .||+|.=++++.++. ...++|||.+.+=-...+++-+.-.+..+.
T Consensus        14 ~ILsGkKTiTiRd~s-e~~~~~G~~~~V~~~e~g~~~c~ieI~sV~   58 (102)
T PRK04980         14 DILAGRKTITIRDES-ESHFKPGDVLRVGTFEDDRYFCTIEVLSVS   58 (102)
T ss_pred             HHHcCCceEEeeCCc-ccCCCCCCEEEEEECCCCcEEEEEEEEEEE
Confidence            478999999998873 579999999999544445555444444433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	74
1o5u_A	101	Crystal Structure Of A Duf861 Family Protein (Tm111		3e-08
1lkn_A	89	Solution Nmr Structure Of Protein Tm_1112 From Ther		3e-08

>pdb|1O5U|A Chain A, Crystal Structure Of A Duf861 Family Protein (Tm1112) From Thermotoga Maritima At 1.83 A Resolution Length = 101

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 1   WGCSPGKFQLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAV 60
           W     +F   +D  ETCY+L+GKV+V  +    +V    GDLVT PKGL C W V   V
Sbjct: 36  WEKEVSEFDWYYDTNETCYILEGKVEVTTEDGKKYV-IEKGDLVTFPKGLRCRWKVLEPV 94
Query: 61  DKYYKF 66
            K+Y  
Sbjct: 95  RKHYNL 100

>pdb|1LKN|A Chain A, Solution Nmr Structure Of Protein Tm_1112 From Thermotoga Maritima. Ontario Centre For Structural Proteomics Target Tm1112_1_89; Northeast Structural Genomics Consortium Target Vt74. Length = 89

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 1  WGCSPGKFQLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAV 60
          W     +F   +D  ETCY+L+GKV+V  +    +V    GDLVT PKGL C W V   V
Sbjct: 24 WEKEVSEFDWYYDTNETCYILEGKVEVTTEDGKKYV-IEKGDLVTFPKGLRCRWKVLEPV 82
Query: 61 DKYYKF 66
           K+Y  
Sbjct: 83 RKHYNL 88

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	74
1o5u_A	101	Novel thermotoga maritima enzyme TM1112; cupin, st	3e-23
3myx_A	238	Uncharacterized protein pspto_0244; protein of unk	5e-21
3myx_A	238	Uncharacterized protein pspto_0244; protein of unk	9e-04
3bcw_A	123	Uncharacterized protein; structural genomics, join	2e-19
4axo_A	151	EUTQ, ethanolamine utilization protein; structural	6e-10
2pyt_A	133	Ethanolamine utilization protein EUTQ; structural	7e-10
3es4_A	116	Uncharacterized protein DUF861 with A RMLC-like C;	6e-07
3ht1_A	145	REMF protein; cupin fold, Zn-binding, antibiotic b	5e-06
3lwc_A	119	Uncharacterized protein; structural genomics, unkn	2e-05
1y3t_A	337	Hypothetical protein YXAG; BI cupin, dioxygenase,	2e-05
1y3t_A	337	Hypothetical protein YXAG; BI cupin, dioxygenase,	3e-05
1juh_A	350	Quercetin 2,3-dioxygenase; cupin, glycoprotein, be	3e-05
1juh_A	350	Quercetin 2,3-dioxygenase; cupin, glycoprotein, be	8e-04
1v70_A	105	Probable antibiotics synthesis protein; structural	2e-04
3cew_A	125	Uncharacterized cupin protein; all beta-protein, j	2e-04
3l2h_A	162	Putative sugar phosphate isomerase; AFE_0303, stru	3e-04
1vj2_A	126	Novel manganese-containing cupin TM1459; structura	5e-04
2gu9_A	113	Tetracenomycin polyketide synthesis protein; X-RAY	8e-04

>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A Length = 101

 Score = 83.4 bits (206), Expect = 3e-23
 Identities = 27/66 (40%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 1   WGCSPGKFQLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAV 60
           W     +F   +D  ETCY+L+GKV+V  +          GDLVT PKGL C W V   V
Sbjct: 36  WEKEVSEFDWYYDTNETCYILEGKVEVTTEDGKK-YVIEKGDLVTFPKGLRCRWKVLEPV 94

Query: 61  DKYYKF 66
            K+Y  
Sbjct: 95  RKHYNL 100

>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV} Length = 238

 Score = 81.3 bits (200), Expect = 5e-21
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 2/65 (3%)

Query: 1   WGCSPGKFQL-KFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVA 59
           W  +P +         E   L++G+V +  +  S  +    GD V + +G  C W  +  
Sbjct: 172 WDSTPYERISRPHKIHELMNLIEGRVVLSLENGSS-LTVNTGDTVFVAQGAPCKWTSTGY 230

Query: 60  VDKYY 64
           V K+Y
Sbjct: 231 VRKFY 235

>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV} Length = 238

 Score = 34.7 bits (79), Expect = 9e-04
 Identities = 9/64 (14%), Positives = 16/64 (25%), Gaps = 2/64 (3%)

Query: 1   WGCSPGKFQLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAV 60
                      +   E   + +G V +     S  V    G+   I +G     D     
Sbjct: 52  VEFGTALSVEAYPYTEMLVMHRGSVTLTSGTDS--VTLSTGESAVIGRGTQVRIDAQPES 109

Query: 61  DKYY 64
              +
Sbjct: 110 LWAF 113

>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50} Length = 123

 Score = 74.2 bits (182), Expect = 2e-19
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 2/65 (3%)

Query: 1   WGCSPGKFQLKFD-AEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVA 59
           W  + G FQ       E C++++G+ ++     +      AGD   +P+G +  W+V   
Sbjct: 54  WESTSGSFQSNTTGYIEYCHIIEGEARLVDPDGTV-HAVKAGDAFIMPEGYTGRWEVDRH 112

Query: 60  VDKYY 64
           V K Y
Sbjct: 113 VKKIY 117

>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile} Length = 151

 Score = 50.8 bits (121), Expect = 6e-10
 Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 2/64 (3%)

Query: 1   WGCSPGKFQLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAV 60
                  F    + +E  Y++ G + +   G    V   +G+L+ IPKG    + V    
Sbjct: 71  MEMKETTFDWTLNYDEIDYVIDGTLDIIIDGRK--VSASSGELIFIPKGSKIQFSVPDYA 128

Query: 61  DKYY 64
              Y
Sbjct: 129 RFIY 132

>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24 Length = 133

 Score = 50.4 bits (120), Expect = 7e-10
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 1   WGCSPGKFQLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAV 60
                  F    + +E   +L+G++ V  +G +  +   AGD++ IPKG S  +    +V
Sbjct: 62  MQWDNAFFPWTLNYDEIDMVLEGELHVRHEGET--MIAKAGDVMFIPKGSSIEFGTPTSV 119

Query: 61  DKYY 64
              Y
Sbjct: 120 RFLY 123

>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str} Length = 116

 Score = 42.5 bits (99), Expect = 6e-07
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 2/65 (3%)

Query: 1   WGCSPGKFQLK-FDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVA 59
           W   PG +     D EET  +++G+   Y +  +D V+ G G +V+I KG+    ++  +
Sbjct: 47  WMAEPGIYNYAGRDLEETFVVVEGEAL-YSQADADPVKIGPGSIVSIAKGVPSRLEILSS 105

Query: 60  VDKYY 64
             K  
Sbjct: 106 FRKLA 110

>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A Length = 145

 Score = 40.3 bits (94), Expect = 5e-06
 Identities = 10/37 (27%), Positives = 18/37 (48%)

Query: 13 DAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKG 49
          + E   Y+L+G + +         E G G+ + IP+G
Sbjct: 58 EWEHEIYVLEGSMGLVLPDQGRTEEVGPGEAIFIPRG 94

>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum} Length = 119

 Score = 38.8 bits (90), Expect = 2e-05
 Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 8   FQLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVS 57
                  ++   +L+G++ V   G +  V  G G++V +PKG + T    
Sbjct: 53  LTETMAVDDVMIVLEGRLSVSTDGET--VTAGPGEIVYMPKGETVTIRSH 100

>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A* Length = 337

 Score = 39.4 bits (91), Expect = 2e-05
 Identities = 9/44 (20%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 13  DAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDV 56
              ET Y L+G++ ++  G    ++   GD + +P     ++ +
Sbjct: 238 YHTETFYCLEGQMTMWTDG--QEIQLNPGDFLHVPANTVHSYRL 279

>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A* Length = 337

 Score = 39.0 bits (90), Expect = 3e-05
 Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 2/37 (5%)

Query: 13  DAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKG 49
           D  E   +L GK+++   G  +     +GD   IP G
Sbjct: 66  DTHEGILVLDGKLELTLDG--ERYLLISGDYANIPAG 100

>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A* Length = 350

 Score = 39.0 bits (90), Expect = 3e-05
 Identities = 7/40 (17%), Positives = 17/40 (42%), Gaps = 3/40 (7%)

Query: 13  DAEETCYLLKGKVKVYPKGSSD---WVEFGAGDLVTIPKG 49
              E  Y  KG  +++ +  ++        +GD  ++P+ 
Sbjct: 70  KHYENFYCNKGSFQLWAQSGNETQQTRVLSSGDYGSVPRN 109

>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A* Length = 350

 Score = 34.8 bits (79), Expect = 8e-04
 Identities = 12/55 (21%), Positives = 19/55 (34%), Gaps = 1/55 (1%)

Query: 12  FDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKF 66
           F       + +G+V V         E G+GD+  IP G+   +       K    
Sbjct: 270 FPGACAFQVQEGRVVVQIGDY-AATELGSGDVAFIPGGVEFKYYSEAYFSKVLFV 323

>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A Length = 105

 Score = 35.9 bits (83), Expect = 2e-04
 Identities = 8/37 (21%), Positives = 14/37 (37%), Gaps = 2/37 (5%)

Query: 13 DAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKG 49
           +++  Y L+G+V V      +      G     P G
Sbjct: 48 GSDKVYYALEGEVVVRVGE--EEALLAPGMAAFAPAG 82

>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis} Length = 125

 Score = 36.0 bits (83), Expect = 2e-04
 Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 2/37 (5%)

Query: 13 DAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKG 49
            EE   +L GK  +   G  + +E  AGD + I   
Sbjct: 47 QNEEIYGILSGKGFITIDG--EKIELQAGDWLRIAPD 81

>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans} Length = 162

 Score = 35.8 bits (82), Expect = 3e-04
 Identities = 13/48 (27%), Positives = 18/48 (37%), Gaps = 2/48 (4%)

Query: 2   GCSPGKFQLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKG 49
           G    ++ L    EE  Y+L GK  +  +   D      GD V  P  
Sbjct: 56  GKESTEYHLHHYEEEAVYVLSGKGTLTMEN--DQYPIAPGDFVGFPCH 101

>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10 Length = 126

 Score = 34.8 bits (80), Expect = 5e-04
 Identities = 7/37 (18%), Positives = 13/37 (35%), Gaps = 2/37 (5%)

Query: 13  DAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKG 49
             E   ++LKGK+ V  +          G  + +   
Sbjct: 67  PWEHEIFVLKGKLTVLKEQ--GEETVEEGFYIFVEPN 101

>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A Length = 113

 Score = 33.9 bits (78), Expect = 8e-04
 Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 2/37 (5%)

Query: 13 DAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKG 49
           A++  +++ G  +    G        AG L+ I +G
Sbjct: 43 GADQWLFVVDGAGEAIVDG--HTQALQAGSLIAIERG 77

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	74
3es4_A	116	Uncharacterized protein DUF861 with A RMLC-like C;	99.91
3myx_A	238	Uncharacterized protein pspto_0244; protein of unk	99.84
3bcw_A	123	Uncharacterized protein; structural genomics, join	99.84
1o5u_A	101	Novel thermotoga maritima enzyme TM1112; cupin, st	99.75
2pyt_A	133	Ethanolamine utilization protein EUTQ; structural	99.72
4axo_A	151	EUTQ, ethanolamine utilization protein; structural	99.63
3lwc_A	119	Uncharacterized protein; structural genomics, unkn	99.57
3myx_A	238	Uncharacterized protein pspto_0244; protein of unk	99.53
2oyz_A	94	UPF0345 protein VPA0057; unknown function, structu	99.2
3fjs_A	114	Uncharacterized protein with RMLC-like cupin fold;	99.2
1v70_A	105	Probable antibiotics synthesis protein; structural	99.1
2i45_A	107	Hypothetical protein; neisseria meningitidis cupin	99.1
1yhf_A	115	Hypothetical protein SPY1581; structural genomics,	99.09
2pfw_A	116	Cupin 2, conserved barrel domain protein; cupin do	99.08
2ozj_A	114	Cupin 2, conserved barrel; cupin superfamily prote	99.07
3eo6_A	106	Protein of unknown function (DUF1255); AFE_2634, s	99.07
3d82_A	102	Cupin 2, conserved barrel domain protein; structur	99.06
2o8q_A	134	Hypothetical protein; cpuin-like fold, structural	99.04
3l2h_A	162	Putative sugar phosphate isomerase; AFE_0303, stru	99.04
2opk_A	112	Hypothetical protein; putative mannose-6-phosphate	99.02
3h8u_A	125	Uncharacterized conserved protein with double-STR	99.02
4e2g_A	126	Cupin 2 conserved barrel domain protein; MCSG, PSI	98.99
2q30_A	110	Uncharacterized protein; double-stranded beta-heli	98.97
2gu9_A	113	Tetracenomycin polyketide synthesis protein; X-RAY	98.96
3i7d_A	163	Sugar phosphate isomerase; YP_168127.1, structural	98.96
2fqp_A	97	Hypothetical protein BP2299; double-stranded beta-	98.95
3ibm_A	167	Cupin 2, conserved barrel domain protein; cupin 2	98.95
1juh_A	350	Quercetin 2,3-dioxygenase; cupin, glycoprotein, be	98.95
4h7l_A	157	Uncharacterized protein; structural genomics, PSI-	98.95
1o4t_A	133	Putative oxalate decarboxylase; double-stranded be	98.94
4b29_A	217	Dimethylsulfoniopropionate lyase; hydrolase, dimet	98.93
3cew_A	125	Uncharacterized cupin protein; all beta-protein, j	98.92
2vpv_A	166	Protein MIF2, MIF2P; nucleus, mitosis, centromere,	98.9
4i4a_A	128	Similar to unknown protein; structural genomics, P	98.89
3rns_A	227	Cupin 2 conserved barrel domain protein; structura	98.88
2b8m_A	117	Hypothetical protein MJ0764; structural genomics,	98.88
1rc6_A	261	Hypothetical protein YLBA; structural genomics, NY	98.87
1lr5_A	163	Auxin binding protein 1; beta jellyroll, double st	98.86
3hqx_A	111	UPF0345 protein aciad0356; DUF1255,PF06865,PSI2,MC	98.86
1y9q_A	192	Transcriptional regulator, HTH_3 family; transcrip	98.85
1dgw_A	178	Canavalin; duplicated swiss-roll beta barrels, loo	98.85
3rns_A	227	Cupin 2 conserved barrel domain protein; structura	98.84
2oa2_A	148	BH2720 protein; 10175341, structural genomics, joi	98.84
2bnm_A	198	Epoxidase; oxidoreductase, cupin, HTH, cation-depe	98.84
3ht1_A	145	REMF protein; cupin fold, Zn-binding, antibiotic b	98.81
1vj2_A	126	Novel manganese-containing cupin TM1459; structura	98.81
3kgz_A	156	Cupin 2 conserved barrel domain protein; metallopr	98.8
1y3t_A	337	Hypothetical protein YXAG; BI cupin, dioxygenase,	98.79
1y3t_A	337	Hypothetical protein YXAG; BI cupin, dioxygenase,	98.78
2vqa_A	361	SLL1358 protein, MNCA; periplasmic binding protein	98.78
1sfn_A	246	Conserved hypothetical protein; structural genomic	98.78
1fi2_A	201	Oxalate oxidase, germin; beta-jellyroll, oxidoredu	98.76
3h7j_A	243	Bacilysin biosynthesis protein BACB; YWFC, bacilys	98.76
3jzv_A	166	Uncharacterized protein RRU_A2000; structural geno	98.75
3d0j_A	140	Uncharacterized protein CA_C3497; beta-barrel, str	98.75
1x82_A	190	Glucose-6-phosphate isomerase; cupin superfamily,	98.75
1sfn_A	246	Conserved hypothetical protein; structural genomic	98.75
1sq4_A	278	GLXB, glyoxylate-induced protein; structural genom	98.73
1rc6_A	261	Hypothetical protein YLBA; structural genomics, NY	98.72
2arc_A	164	ARAC, arabinose operon regulatory protein; transcr	98.71
1sef_A	274	Conserved hypothetical protein; structural genomic	98.71
1yfu_A	174	3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxid	98.69
3es1_A	172	Cupin 2, conserved barrel domain protein; YP_00116	98.68
2cav_A	445	Protein (canavalin); vicilin, 7S SEED protein, dom	98.68
2ea7_A	434	7S globulin-1; beta barrel, cupin superfamily, pla	98.68
2f4p_A	147	Hypothetical protein TM1010; double-stranded beta-	98.66
1sef_A	274	Conserved hypothetical protein; structural genomic	98.66
4e2q_A	266	Ureidoglycine aminohydrolase; BI-cupin, manganese	98.65
1juh_A	350	Quercetin 2,3-dioxygenase; cupin, glycoprotein, be	98.65
1uij_A	416	Beta subunit of beta conglycinin; double-stranded	98.65
1vr3_A	191	Acireductone dioxygenase; 13543033, structural gen	98.63
2xlg_A	239	SLL1785 protein, CUCA; metal binding protein, cupi	98.63
1zvf_A	176	3-hydroxyanthranilate 3,4-dioxygenase; jellyroll b	98.63
4e2q_A	266	Ureidoglycine aminohydrolase; BI-cupin, manganese	98.62
3h7j_A	243	Bacilysin biosynthesis protein BACB; YWFC, bacilys	98.59
1j58_A	385	YVRK protein; cupin, decarboxyklase, oxalate, mang	98.57
3fz3_A	531	Prunin; TREE NUT allergen, allergy, amandin, almon	98.57
2d5f_A	493	Glycinin A3B4 subunit; soybean, globulin, 11S,SEED	98.55
3c3v_A	510	Arachin ARAH3 isoform; peanut allergen, allergy, g	98.55
2vqa_A	361	SLL1358 protein, MNCA; periplasmic binding protein	98.55
1fxz_A	476	Glycinin G1; proglycinin, legumin, SEED storage pr	98.55
2ozi_A	98	Hypothetical protein RPA4178; APC6210, putative pr	98.54
1j58_A	385	YVRK protein; cupin, decarboxyklase, oxalate, mang	98.5
2e9q_A	459	11S globulin subunit beta; cucubitin, pumpkin SEED	98.48
1sq4_A	278	GLXB, glyoxylate-induced protein; structural genom	98.47
2d40_A	354	Z3393, putative gentisate 1,2-dioxygenase; gentisi	98.45
2d40_A	354	Z3393, putative gentisate 1,2-dioxygenase; gentisi	98.44
2phl_A	397	Phaseolin; plant SEED storage protein(vicilin); HE	98.42
1zrr_A	179	E-2/E-2' protein; nickel, cupin, beta helix, methi	98.39
3lag_A	98	Uncharacterized protein RPA4178; functionally unkn	98.38
3ksc_A	496	LEGA class, prolegumin; PEA prolegumin, 11S SEED s	98.36
3kgl_A	466	Cruciferin; 11S SEED globulin, rapeseed, SEED stor	98.35
3bu7_A	394	Gentisate 1,2-dioxygenase; cupin domain, oxidoredu	98.35
2e9q_A	459	11S globulin subunit beta; cucubitin, pumpkin SEED	98.35
1uij_A	416	Beta subunit of beta conglycinin; double-stranded	98.35
1fxz_A	476	Glycinin G1; proglycinin, legumin, SEED storage pr	98.32
3qac_A	465	11S globulin SEED storage protein; 11S SEED storag	98.31
2ea7_A	434	7S globulin-1; beta barrel, cupin superfamily, pla	98.28
2o1q_A	145	Putative acetyl/propionyl-COA carboxylase, alpha;	98.27
3bu7_A	394	Gentisate 1,2-dioxygenase; cupin domain, oxidoredu	98.25
2phl_A	397	Phaseolin; plant SEED storage protein(vicilin); HE	98.24
2qnk_A	286	3-hydroxyanthranilate 3,4-dioxygenase; bicupin fol	98.24
3s7i_A	418	Allergen ARA H 1, clone P41B; bicupin, vicilin, st	98.22
3nw4_A	368	Gentisate 1,2-dioxygenase; beta-barrel, oxidoreduc	98.19
3nw4_A	368	Gentisate 1,2-dioxygenase; beta-barrel, oxidoreduc	98.19
2d5f_A	493	Glycinin A3B4 subunit; soybean, globulin, 11S,SEED	98.17
2qnk_A	286	3-hydroxyanthranilate 3,4-dioxygenase; bicupin fol	98.13
3qac_A	465	11S globulin SEED storage protein; 11S SEED storag	98.1
3ksc_A	496	LEGA class, prolegumin; PEA prolegumin, 11S SEED s	98.06
3gbg_A	276	TCP pilus virulence regulatory protein; cupin, hel	98.06
3c3v_A	510	Arachin ARAH3 isoform; peanut allergen, allergy, g	98.02
2cav_A	445	Protein (canavalin); vicilin, 7S SEED protein, dom	98.01
3s7i_A	418	Allergen ARA H 1, clone P41B; bicupin, vicilin, st	97.97
1eyb_A	471	Homogentisate 1,2-dioxygenase; jelly roll, beta sa	97.96
2y0o_A	175	Probable D-lyxose ketol-isomerase; carbohydrate me	97.9
3cjx_A	165	Protein of unknown function with A cupin-like FOL;	97.87
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	97.74
3ebr_A	159	Uncharacterized RMLC-like cupin; structural genomi	97.7
3kgl_A	466	Cruciferin; 11S SEED globulin, rapeseed, SEED stor	97.67
2q1z_B	195	Anti-sigma factor CHRR, transcriptional activator;	97.5
2wfp_A	394	Mannose-6-phosphate isomerase; APO-structure, meta	97.3
2pa7_A	141	DTDP-6-deoxy-3,4-keto-hexulose isomerase; deoxysug	97.2
3bal_A	153	Acetylacetone-cleaving enzyme; jelly roll, tetrame	97.07
3o14_A	223	Anti-ecfsigma factor, CHRR; cupin, structural geno	97.07
3ejk_A	174	DTDP sugar isomerase; YP_390184.1, structural geno	97.05
1zx5_A	300	Mannosephosphate isomerase, putative; STRU genomic	96.86
1qwr_A	319	Mannose-6-phosphate isomerase; structural genomics	96.83
2qjv_A	270	Uncharacterized IOLB-like protein; structural geno	96.81
3fz3_A	531	Prunin; TREE NUT allergen, allergy, amandin, almon	96.79
1pmi_A	440	PMI, phosphomannose isomerase; aldose-ketose isome	96.49
1ywk_A	289	4-deoxy-L-threo-5-hexosulose-uronate ketol- isomer	96.35
4gjz_A	235	Lysine-specific demethylase 8; JMJC, beta barrel,	95.85
1xru_A	282	4-deoxy-L-threo-5-hexosulose-uronate ketol-isomer;	95.51
3o14_A	223	Anti-ecfsigma factor, CHRR; cupin, structural geno	95.48
2vec_A	256	YHAK, pirin-like protein YHAK; ROS, bicupin, sulfe	95.45
1ep0_A	185	DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; race	94.69
3bpz_A	202	Potassium/sodium hyperpolarization-activated cycli	94.67
2vec_A	256	YHAK, pirin-like protein YHAK; ROS, bicupin, sulfe	94.6
3eqe_A	171	Putative cystein deoxygenase; YUBC, SR112, NESG, s	94.5
2ixk_A	184	DTDP-4-dehydrorhamnose 3,5-epimerase; isomerase, l	94.42
3d8c_A	349	Hypoxia-inducible factor 1 alpha inhibitor; FIH, H	94.36
1dgw_Y	93	Canavalin; duplicated swiss-roll beta barrels, loo	94.35
1yll_A	200	PA5104, conserved hypothetical protein; structural	94.22
1tq5_A	242	Protein YHHW; bicupin, pirin, montreal-kingston ba	94.17
3esg_A	193	HUTD, putative uncharacterized protein; beta barre	94.15
2yu1_A	451	JMJC domain-containing histone demethylation PROT;	94.11
1nxm_A	197	DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; jell	94.04
1yud_A	170	Hypothetical protein SO0799; SOR12, Q8E1N8, PSI, p	93.9
2d93_A	134	RAP guanine nucleotide exchange factor 6; CNMP_bin	93.77
3bb6_A	127	Uncharacterized protein YEAR; structural genomics,	93.73
2xdv_A	442	MYC-induced nuclear antigen; ribosome biogenesis,	93.69
1wlt_A	196	176AA long hypothetical DTDP-4-dehydrorhamnose 3,	93.67
3al5_A	338	HTYW5, JMJC domain-containing protein C2ORF60; tRN	93.58
3ryk_A	205	DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pat	93.55
2gm6_A	208	Cysteine dioxygenase type I; structural genomics,	93.54
2ptm_A	198	Hyperpolarization-activated (IH) channel; ION chan	93.46
1tq5_A	242	Protein YHHW; bicupin, pirin, montreal-kingston ba	93.39
3pna_A	154	CAMP-dependent protein kinase type I-alpha regula	93.05
3ocp_A	139	PRKG1 protein; serine/threonine kinase, TF2I and I	93.04
1vrb_A	342	Putative asparaginyl hydroxylase; 2636534, structu	92.76
2qdr_A	303	Uncharacterized protein; double-stranded beta-heli	92.73
4f8a_A	160	Potassium voltage-gated channel subfamily H membe;	92.27
2p17_A	277	Pirin-like protein; GK1651, structural genomics, s	92.09
3k2o_A	336	Bifunctional arginine demethylase and lysyl-hydro	92.09
3ukn_A	212	Novel protein similar to vertebrate potassium VOL	92.01
3kmh_A	246	D-lyxose isomerase; cupin beta-barrel, structural	91.96
1dzr_A	183	DTDP-4-dehydrorhamnose 3\,5-epimerase; isomerase,	91.9
2c0z_A	216	NOVW; isomerase, epimerase, antibiotic biosynthesi	91.61
1oi6_A	205	PCZA361.16; epimerase, vancomycin group antibiotic	91.25
1dgw_X	79	Canavalin; duplicated swiss-roll beta barrels, loo	91.23
3k3o_A	371	PHF8, PHD finger protein 8; histone demethylase, c	90.95
3kv5_D	488	JMJC domain-containing histone demethylation prote	90.89
3of1_A	246	CAMP-dependent protein kinase regulatory subunit;	90.85
3dl3_A	119	Tellurite resistance protein B; X-RAY NESG VFR98 Q	90.44
4diq_A	489	Lysine-specific demethylase NO66; structural genom	90.33
2ypd_A	392	Probable JMJC domain-containing histone demethyla	90.1
3pua_A	392	GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe	89.89
2qcs_B	291	CAMP-dependent protein kinase type I-alpha regula	89.74
1yll_A	200	PA5104, conserved hypothetical protein; structural	89.7
3kv4_A	447	PHD finger protein 8; epigenetics, histone CODE, c	89.69
1zx5_A	300	Mannosephosphate isomerase, putative; STRU genomic	89.64
3mdp_A	142	Cyclic nucleotide-binding domain (CNMP-BD) protei;	89.45
3kv9_A	397	JMJC domain-containing histone demethylation prote	89.41
2p17_A	277	Pirin-like protein; GK1651, structural genomics, s	89.33
1qwr_A	319	Mannose-6-phosphate isomerase; structural genomics	89.24
1upi_A	225	DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pat	89.24
3eln_A	200	Cysteine dioxygenase type 1; peroxysulfenate, non-	88.08
3of1_A	246	CAMP-dependent protein kinase regulatory subunit;	88.04
3shr_A	299	CGMP-dependent protein kinase 1; cyclic nucleotide	87.94
1vp6_A	138	CNBD, cyclic-nucleotide binding domain of mesorhiz	87.53
3pur_A	528	Lysine-specific demethylase 7 homolog; oxidoreduct	87.4
2wfp_A	394	Mannose-6-phosphate isomerase; APO-structure, meta	87.28
1ft9_A	222	Carbon monoxide oxidation system transcription reg	87.13
3dn7_A	194	Cyclic nucleotide binding regulatory protein; stru	85.9
4f7z_A	999	RAP guanine nucleotide exchange factor 4; cyclic n	85.74
1o7f_A	469	CAMP-dependent RAP1 guanine-nucleotide exchange fa	85.69
4hn1_A	201	Putative 3-epimerase in D-allose pathway; 3'-monoe	85.14
3dv8_A	220	Transcriptional regulator, CRP/FNR family; cyclic	84.32
2fmy_A	220	COOA, carbon monoxide oxidation system transcripti	83.7
1pmi_A	440	PMI, phosphomannose isomerase; aldose-ketose isome	83.65
1wgp_A	137	Probable cyclic nucleotide-gated ION channel 6; cy	82.98
2oz6_A	207	Virulence factor regulator; winged helix, helix-tu	82.44
1j1l_A	290	Pirin; beta sandwich, cupin, iron, metatl binding	82.38
2z69_A	154	DNR protein; beta barrel, dimerization helix, tran	81.95
2qjv_A	270	Uncharacterized IOLB-like protein; structural geno	81.83
1pcq_O	97	Groes protein; chaperone; HET: ADP; 2.81A {Escheri	81.03
2pqq_A	149	Putative transcriptional regulator; APC7345, strep	80.95
3idb_B	161	CAMP-dependent protein kinase type II-beta regulat	80.74
3d0s_A	227	Transcriptional regulatory protein; CAMP receptor	80.56
3b02_A	195	Transcriptional regulator, CRP family; structural	80.39
3fx3_A	237	Cyclic nucleotide-binding protein; helix_TURN_heli	80.27
3ryp_A	210	Catabolite gene activator; CAMP receptor protein (	80.11

>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}

Probab=99.91  E-value=2e-24  Score=132.81  Aligned_cols=66  Identities=23%  Similarity=0.392  Sum_probs=62.8

Q ss_pred             CCcCCceEEEecCce-EEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEEEe
Q 037642            1 WGCSPGKFQLKFDAE-ETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFE   67 (74)
Q Consensus         1 W~~~pg~~~~~~~~~-E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~~   67 (74)
                      |+|+||+|+++++.+ |+||||+|+++|+.++| +.++++|||+++||+|++++|++.+++||+|++.
T Consensus        47 We~tPG~~~~~~~~~~E~~~iLeG~~~lt~ddG-~~~~l~aGD~~~~P~G~~gtWev~e~vrK~~~~~  113 (116)
T 3es4_A           47 WMAEPGIYNYAGRDLEETFVVVEGEALYSQADA-DPVKIGPGSIVSIAKGVPSRLEILSSFRKLATVI  113 (116)
T ss_dssp             EEECSEEEEECCCSEEEEEEEEECCEEEEETTC-CCEEECTTEEEEECTTCCEEEEECSCEEEEEEEE
T ss_pred             EecCCceeECeeCCCcEEEEEEEeEEEEEeCCC-eEEEECCCCEEEECCCCeEEEEEeEEEeEEEEEe
Confidence            899999999998876 99999999999999998 5899999999999999999999999999999974

>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV}

Probab=99.84  E-value=7.5e-21  Score=128.51  Aligned_cols=66  Identities=23%  Similarity=0.481  Sum_probs=61.6

Q ss_pred             CCcCCceE-EEecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEEEe
Q 037642            1 WGCSPGKF-QLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFE   67 (74)
Q Consensus         1 W~~~pg~~-~~~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~~   67 (74)
                      |+|+||++ .+.++.+|+||||||+++|+.++| +.++++|||+++||+|++++|++.+++||+|+|.
T Consensus       172 W~~tpG~~~~~~~~~~E~~~ILeG~v~lt~~~G-~~~~~~aGD~~~~P~G~~~tWev~e~vrK~Yvit  238 (238)
T 3myx_A          172 WDSTPYERISRPHKIHELMNLIEGRVVLSLENG-SSLTVNTGDTVFVAQGAPCKWTSTGYVRKFYAVT  238 (238)
T ss_dssp             EEECCEEBCCEECSSCEEEEEEECCEEEEETTS-CEEEECTTCEEEECTTCEEEEEESSCEEEEEEEC
T ss_pred             EEeCCCEEECCcCCCCEEEEEEEeEEEEEeCCC-CEEEECCCCEEEECCCCEEEEEECccEEEEEEeC
Confidence            89999986 466789999999999999999998 5899999999999999999999999999999984

>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}

Probab=99.84  E-value=1e-20  Score=116.56  Aligned_cols=67  Identities=25%  Similarity=0.532  Sum_probs=62.8

Q ss_pred             CCcCCceEEEecCc-eEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEEEec
Q 037642            1 WGCSPGKFQLKFDA-EETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFES   68 (74)
Q Consensus         1 W~~~pg~~~~~~~~-~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~~~   68 (74)
                      |+|+||.|.+|+.. +|++|||+|++++++++| +.+.++|||.++||+|.+|+|++.+++||+|++..
T Consensus        54 w~~~pG~~~~~~~~~~E~~~Vl~G~~~l~~~~g-~~~~l~~GD~~~ip~g~~h~~~~~~~~rK~yv~~~  121 (123)
T 3bcw_A           54 WESTSGSFQSNTTGYIEYCHIIEGEARLVDPDG-TVHAVKAGDAFIMPEGYTGRWEVDRHVKKIYFVTH  121 (123)
T ss_dssp             EEEEEEEEECCCTTEEEEEEEEEEEEEEECTTC-CEEEEETTCEEEECTTCCCEEEEEEEEEEEEEEEE
T ss_pred             EEECCCceeeEcCCCcEEEEEEEEEEEEEECCC-eEEEECCCCEEEECCCCeEEEEECCceeEEEEEEe
Confidence            89999999988887 999999999999999776 58999999999999999999999999999999864

>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A

Probab=99.75  E-value=1.4e-17  Score=99.26  Aligned_cols=66  Identities=41%  Similarity=0.767  Sum_probs=61.5

Q ss_pred             CCcCCceEEEecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEEEe
Q 037642            1 WGCSPGKFQLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFE   67 (74)
Q Consensus         1 W~~~pg~~~~~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~~   67 (74)
                      |.++||.+.++.+.+|++|||+|++++.++++ +.+.++|||+++||+|..++|...++++|+|++.
T Consensus        36 ~~~~pg~~~~hH~~~E~~~Vl~G~~~~~i~~g-~~~~l~~GD~i~ip~g~~H~~~n~~~~~~~yv~~  101 (101)
T 1o5u_A           36 WEKEVSEFDWYYDTNETCYILEGKVEVTTEDG-KKYVIEKGDLVTFPKGLRCRWKVLEPVRKHYNLF  101 (101)
T ss_dssp             EEECSEEEEEECSSCEEEEEEEEEEEEEETTC-CEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEC
T ss_pred             EEeCCCcccccCCceEEEEEEeCEEEEEECCC-CEEEECCCCEEEECCCCcEEEEeCCCeeEEEEEC
Confidence            78999999888889999999999999999844 5799999999999999999999999999999973

>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24

Probab=99.72  E-value=7.7e-17  Score=99.99  Aligned_cols=68  Identities=24%  Similarity=0.325  Sum_probs=62.2

Q ss_pred             CCcCCceEEEecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEEEecCC
Q 037642            1 WGCSPGKFQLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFESTS   70 (74)
Q Consensus         1 W~~~pg~~~~~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~~~~~   70 (74)
                      |+++||.+++|++.+|++|||+|++++++++  +.+.++|||+++||+|..++|+..++++++|++..++
T Consensus        62 ~~~~pG~~~~h~~~~E~~~VLeG~~~l~~~g--~~~~l~~GD~i~~p~g~~h~~~~~~~~~~l~v~~p~~  129 (133)
T 2pyt_A           62 MQWDNAFFPWTLNYDEIDMVLEGELHVRHEG--ETMIAKAGDVMFIPKGSSIEFGTPTSVRFLYVAWPAN  129 (133)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEEEEEEEEETT--EEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEESTT
T ss_pred             EEECCCCccccCCCCEEEEEEECEEEEEECC--EEEEECCCcEEEECCCCEEEEEeCCCEEEEEEEcCCc
Confidence            5678998888989999999999999999996  5799999999999999999999999999999986553

>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}

Probab=99.63  E-value=4.1e-15  Score=94.60  Aligned_cols=67  Identities=21%  Similarity=0.351  Sum_probs=59.8

Q ss_pred             CcCCceEEEecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEEEecCC
Q 037642            2 GCSPGKFQLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFESTS   70 (74)
Q Consensus         2 ~~~pg~~~~~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~~~~~   70 (74)
                      +++.+.++++.+.+|++|||+|++++++++  +++.++|||+++||+|.+++|...++++++|++.-+.
T Consensus        72 ~~e~~~~~~~~~~eE~~yVLeG~~~l~i~g--~~~~l~~GD~i~iP~G~~h~~~n~~~a~~l~V~~P~~  138 (151)
T 4axo_A           72 EMKETTFDWTLNYDEIDYVIDGTLDIIIDG--RKVSASSGELIFIPKGSKIQFSVPDYARFIYVTYPAD  138 (151)
T ss_dssp             EEEEEEEEEECSSEEEEEEEEEEEEEEETT--EEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEECSC
T ss_pred             EEcCccccEeCCCcEEEEEEEeEEEEEECC--EEEEEcCCCEEEECCCCEEEEEeCCCEEEEEEECCCC
Confidence            445567888999999999999999999966  5899999999999999999999999999999987554

>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}

Probab=99.57  E-value=4.6e-14  Score=85.83  Aligned_cols=65  Identities=23%  Similarity=0.408  Sum_probs=56.2

Q ss_pred             CcCCce-EEEecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEe-eeEEEEEEEec
Q 037642            2 GCSPGK-FQLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVS-VAVDKYYKFES   68 (74)
Q Consensus         2 ~~~pg~-~~~~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~-~~~~k~y~~~~   68 (74)
                      ..+||. ..+|.+.+|++|||+|++++.+++  +.+.+++||.++||+|..|+|+.. ++.+++|++.-
T Consensus        46 ~~~pG~~~~~H~~~~E~~~Vl~G~~~~~~~g--~~~~l~~GD~v~ip~g~~H~~~~~~~~~~~l~v~~P  112 (119)
T 3lwc_A           46 RYAPGQSLTETMAVDDVMIVLEGRLSVSTDG--ETVTAGPGEIVYMPKGETVTIRSHEEGALTAYVTYP  112 (119)
T ss_dssp             EECTTCEEEEECSSEEEEEEEEEEEEEEETT--EEEEECTTCEEEECTTCEEEEEEEEEEEEEEEEEEC
T ss_pred             EECCCCCcCccCCCCEEEEEEeCEEEEEECC--EEEEECCCCEEEECCCCEEEEEcCCCCeEEEEEECC
Confidence            356774 467888999999999999999976  579999999999999999999988 77888888753

>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV}

Probab=99.53  E-value=5e-14  Score=95.11  Aligned_cols=62  Identities=16%  Similarity=0.233  Sum_probs=55.0

Q ss_pred             CceEEE-ecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEEEec
Q 037642            5 PGKFQL-KFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFES   68 (74)
Q Consensus         5 pg~~~~-~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~~~   68 (74)
                      .|.+.. .++.+|++|||||+++|++ +| +++.++|||.++||+|..++|++.+++||+|+.+.
T Consensus        55 ~g~~~v~~~p~dE~~~VleG~~~lt~-~g-~~~~~~~Gd~~~ip~G~~~~w~~~~~~~~~y~~~~  117 (238)
T 3myx_A           55 GTALSVEAYPYTEMLVMHRGSVTLTS-GT-DSVTLSTGESAVIGRGTQVRIDAQPESLWAFCAST  117 (238)
T ss_dssp             CSEEEESSCSSEEEEEEEESEEEEEE-TT-EEEEEETTCEEEECTTCCEEEEECTTEEEEEEEEC
T ss_pred             ccccccccCCCcEEEEEEEeEEEEEC-CC-eEEEEcCCCEEEECCCCEEEEEecCCeEEEEEecc
Confidence            344444 4778999999999999999 55 68999999999999999999999999999999876

>2oyz_A UPF0345 protein VPA0057; unknown function, structural genomi 2, protein structure initiative, midwest center for structu genomics, MCSG; 1.71A {Vibrio parahaemolyticus} SCOP: b.82.1.22

Probab=99.20  E-value=1.7e-10  Score=68.35  Aligned_cols=62  Identities=24%  Similarity=0.426  Sum_probs=57.0

Q ss_pred             cCCceEEEecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEEE
Q 037642            3 CSPGKFQLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKF   66 (74)
Q Consensus         3 ~~pg~~~~~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~   66 (74)
                      ..||.|.+.+...|++.|++|.+++.+++..+..++++||.|.+|++.++.+++.+..  .|++
T Consensus        30 m~pGeytF~T~~~E~M~vvsG~~~V~lpg~~ew~~~~aGesF~Vpans~F~l~v~~~~--~YlC   91 (94)
T 2oyz_A           30 MLPGEYTFGTQAPERMTVVKGALVVKRVGEADWTTYSSGESFDVEGNSSFELQVKDAT--AYLC   91 (94)
T ss_dssp             ECSEEEEEEESSCEEEEEEESEEEEEETTCSSCEEEETTCEEEECSSEEEEEEESSCE--EEEE
T ss_pred             EeceEEEEcCCCeEEEEEEEeEEEEEcCCCCcCEEECCCCEEEECCCCEEEEEEcccE--eEEE
Confidence            4699999999999999999999999999986789999999999999999999999885  5654

>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}

Probab=99.20  E-value=3.1e-10  Score=67.71  Aligned_cols=67  Identities=16%  Similarity=0.173  Sum_probs=53.2

Q ss_pred             CCceE-EEe-cCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEEEecCCCC
Q 037642            4 SPGKF-QLK-FDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFESTSSS   72 (74)
Q Consensus         4 ~pg~~-~~~-~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~~~~~~~   72 (74)
                      +||.. ..| .+.+|++|||+|++++.+++  +.+.+++||+++||+|..|.+...++.+.+.++-.+++-
T Consensus        44 ~~G~~~~~H~H~~~e~~~Vl~G~~~~~i~~--~~~~l~~Gd~i~ip~~~~H~~~~~~~~~~~~~~v~p~~~  112 (114)
T 3fjs_A           44 PAGKQVGSHSVAGPSTIQCLEGEVEIGVDG--AQRRLHQGDLLYLGAGAAHDVNAITNTSLLVTVVLVDRG  112 (114)
T ss_dssp             CTTCEEEEECCSSCEEEEEEESCEEEEETT--EEEEECTTEEEEECTTCCEEEEESSSEEEEEEEECC---
T ss_pred             CCCCccCceeCCCcEEEEEEECEEEEEECC--EEEEECCCCEEEECCCCcEEEEeCCCcEEEEEEEeCCcC
Confidence            34543 333 34689999999999999998  479999999999999999999999988777777666653

>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A

Probab=99.10  E-value=1.5e-09  Score=61.71  Aligned_cols=60  Identities=17%  Similarity=0.185  Sum_probs=46.6

Q ss_pred             CCce-EEEec--CceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEee--eEEEEEE
Q 037642            4 SPGK-FQLKF--DAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSV--AVDKYYK   65 (74)
Q Consensus         4 ~pg~-~~~~~--~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~--~~~k~y~   65 (74)
                      .||. ...|.  ..+|++||++|++++.+++  +.+.+++||+++||+|..|.+...+  +++.+++
T Consensus        36 ~pg~~~~~H~H~~~~e~~~v~~G~~~~~~~~--~~~~l~~Gd~~~ip~~~~H~~~~~~~~~~~~~~v  100 (105)
T 1v70_A           36 LPGQAQKVHVHEGSDKVYYALEGEVVVRVGE--EEALLAPGMAAFAPAGAPHGVRNESASPALLLVV  100 (105)
T ss_dssp             CTTCEEEEECCSSCEEEEEEEESCEEEEETT--EEEEECTTCEEEECTTSCEEEECCSSSCEEEEEE
T ss_pred             CCCCcCCccCCCCCcEEEEEEeCEEEEEECC--EEEEeCCCCEEEECCCCcEEeEeCCCCCEEEEEE
Confidence            4554 23443  3579999999999999998  4799999999999999999998764  4433333

>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}

Probab=99.10  E-value=3.7e-10  Score=65.92  Aligned_cols=57  Identities=12%  Similarity=0.218  Sum_probs=45.6

Q ss_pred             CceEEEec-Cc-eEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEE
Q 037642            5 PGKFQLKF-DA-EETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDK   62 (74)
Q Consensus         5 pg~~~~~~-~~-~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k   62 (74)
                      ||.+.+|. +. +|++|||+|++++.++++ +.+.+++||+++||+|..|.+...++++-
T Consensus        37 ~g~~~~H~H~~~~E~~~Vl~G~~~~~~~~~-~~~~l~~Gd~~~ip~~~~H~~~~~~~~~~   95 (107)
T 2i45_A           37 LGDYGWHTHGYSDKVLFAVEGDMAVDFADG-GSMTIREGEMAVVPKSVSHRPRSENGCSL   95 (107)
T ss_dssp             EEECCCBCC--CCEEEEESSSCEEEEETTS-CEEEECTTEEEEECTTCCEEEEEEEEEEE
T ss_pred             CCCCcceeCCCCCEEEEEEeCEEEEEECCC-cEEEECCCCEEEECCCCcEeeEeCCCeEE
Confidence            44443332 34 899999999999999994 36999999999999999999998777543

>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9

Probab=99.09  E-value=2.4e-09  Score=62.69  Aligned_cols=64  Identities=11%  Similarity=0.179  Sum_probs=51.2

Q ss_pred             CCce-EEEe-cCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEEEecC
Q 037642            4 SPGK-FQLK-FDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFEST   69 (74)
Q Consensus         4 ~pg~-~~~~-~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~~~~   69 (74)
                      .||. ...| .+..|++||++|++++.+++  +.+.+++||+++||+|..|.+...++.+.+.++..+
T Consensus        48 ~~g~~~~~H~H~~~e~~~vl~G~~~~~~~~--~~~~l~~Gd~~~ip~~~~H~~~~~~~~~~~~v~~~~  113 (115)
T 1yhf_A           48 DKGQEIGRHSSPGDAMVTILSGLAEITIDQ--ETYRVAEGQTIVMPAGIPHALYAVEAFQMLLVVVKP  113 (115)
T ss_dssp             CTTCEEEEECCSSEEEEEEEESEEEEEETT--EEEEEETTCEEEECTTSCEEEEESSCEEEEEEEECS
T ss_pred             CCCCccCCEECCCcEEEEEEeCEEEEEECC--EEEEECCCCEEEECCCCCEEEEECCCceEEEEEEcc
Confidence            4554 3334 35789999999999999988  479999999999999999999998887555554443

>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}

Probab=99.08  E-value=3.2e-09  Score=62.22  Aligned_cols=61  Identities=16%  Similarity=0.175  Sum_probs=49.6

Q ss_pred             CCceE-EEe-cCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEEE
Q 037642            4 SPGKF-QLK-FDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKF   66 (74)
Q Consensus         4 ~pg~~-~~~-~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~   66 (74)
                      .||.. ..| .+..|++|||+|.+++.+++  +.+.+++||+++||+|..|.+...++.+.+.++
T Consensus        42 ~pg~~~~~H~H~~~e~~~vl~G~~~~~~~~--~~~~l~~Gd~~~ip~~~~H~~~~~~~~~~l~v~  104 (116)
T 2pfw_A           42 DKGAEGYVHAHRHSQVSYVVEGEFHVNVDG--VIKVLTAGDSFFVPPHVDHGAVCPTGGILIDTF  104 (116)
T ss_dssp             CTTEEEEEECCSSEEEEEEEEECEEEEETT--EEEEECTTCEEEECTTCCEEEEESSCEEEEEEE
T ss_pred             CCCCcCCcEECCcceEEEEEeeEEEEEECC--EEEEeCCCCEEEECcCCceeeEeCCCcEEEEEE
Confidence            45543 333 35799999999999999987  479999999999999999999998887554444

>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}

Probab=99.07  E-value=2.1e-09  Score=63.15  Aligned_cols=54  Identities=7%  Similarity=0.058  Sum_probs=46.8

Q ss_pred             cCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEEEe
Q 037642           12 FDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFE   67 (74)
Q Consensus        12 ~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~~   67 (74)
                      .+..|++|||+|++++.+++  +.+.+++||+++||+|..|.+...++.+.+.++.
T Consensus        56 h~~~e~~~vl~G~~~~~i~~--~~~~l~~Gd~i~i~~~~~H~~~~~~~~~~~~i~~  109 (114)
T 2ozj_A           56 YFGDTLYLILQGEAVITFDD--QKIDLVPEDVLMVPAHKIHAIAGKGRFKMLQITL  109 (114)
T ss_dssp             CSSCEEEEEEEEEEEEEETT--EEEEECTTCEEEECTTCCBEEEEEEEEEEEEEEE
T ss_pred             CCCCeEEEEEeCEEEEEECC--EEEEecCCCEEEECCCCcEEEEeCCCcEEEEEEE
Confidence            35789999999999999998  5799999999999999999999888775555543

>3eo6_A Protein of unknown function (DUF1255); AFE_2634, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 0.97A {Acidithiobacillus ferrooxidans ATCC23270}

Probab=99.07  E-value=1.9e-09  Score=64.99  Aligned_cols=62  Identities=29%  Similarity=0.428  Sum_probs=56.8

Q ss_pred             CCceEEEecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEEEe
Q 037642            4 SPGKFQLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFE   67 (74)
Q Consensus         4 ~pg~~~~~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~~   67 (74)
                      .||.|.+.....|++.|++|.+++.+.+..++.++++||.|.+|++.++..++.+..  .|++.
T Consensus        44 ~PGeY~F~T~~~E~MevvsG~l~V~LpG~~eW~~~~aGesF~VpanssF~lkv~~~t--~Y~Cs  105 (106)
T 3eo6_A           44 HPGVYTLSSEVAETIRVLSGMAYYHAEGANDVQELHAGDSMVIPANQSYRLEVMEPL--DYLLS  105 (106)
T ss_dssp             CSEEEEECCSSCEEEEEEEEEEEEECTTCSSCEEEETTCEEEECSSSCEEEEEEEEE--EEEEE
T ss_pred             eeeEEEecCCCcEEEEEEEeEEEEECCCCccCEEECCCCEEEECCCCcEEEEECceE--EEEEc
Confidence            489999999999999999999999999976789999999999999999999999864  67765

>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}

Probab=99.06  E-value=1e-09  Score=62.72  Aligned_cols=48  Identities=17%  Similarity=0.320  Sum_probs=42.5

Q ss_pred             ceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEE
Q 037642           14 AEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKY   63 (74)
Q Consensus        14 ~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~   63 (74)
                      ..|++||++|++++.+++.  .+.+++||+++||+|..|.+...+..+-+
T Consensus        50 ~~e~~~v~~G~~~~~~~~~--~~~l~~Gd~~~ip~~~~H~~~~~~~~~~l   97 (102)
T 3d82_A           50 TDEVFIVMEGTLQIAFRDQ--NITLQAGEMYVIPKGVEHKPMAKEECKIM   97 (102)
T ss_dssp             CCEEEEEEESEEEEECSSC--EEEEETTEEEEECTTCCBEEEEEEEEEEE
T ss_pred             CcEEEEEEeCEEEEEECCE--EEEEcCCCEEEECCCCeEeeEcCCCCEEE
Confidence            4899999999999999984  69999999999999999999988765433

>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans}

Probab=99.04  E-value=2e-09  Score=64.84  Aligned_cols=60  Identities=17%  Similarity=0.054  Sum_probs=47.3

Q ss_pred             EEecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEEEecC
Q 037642            9 QLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFEST   69 (74)
Q Consensus         9 ~~~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~~~~   69 (74)
                      ++|...+|++|||+|.+++.++++ +.+.+++||+++||+|..|.+.....-.++..+..+
T Consensus        59 H~H~~~~E~~~vl~G~~~~~~~~~-~~~~l~~Gd~~~ip~g~~H~~~~~~~~~~~l~~~~p  118 (134)
T 2o8q_A           59 HTHTVGFQLFYVLRGWVEFEYEDI-GAVMLEAGGSAFQPPGVRHRELRHSDDLEVLEIVSP  118 (134)
T ss_dssp             EEECCSCEEEEEEESEEEEEETTT-EEEEEETTCEEECCTTCCEEEEEECTTCEEEEEESS
T ss_pred             EECCCCcEEEEEEeCEEEEEECCc-EEEEecCCCEEEECCCCcEEeEeCCCCeEEEEEECC
Confidence            455555999999999999999995 479999999999999999999884432244434444

>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}

Probab=99.04  E-value=2.2e-09  Score=66.86  Aligned_cols=54  Identities=22%  Similarity=0.268  Sum_probs=45.5

Q ss_pred             EEecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCC-CeEEEEEe--eeEEEEE
Q 037642            9 QLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKG-LSCTWDVS--VAVDKYY   64 (74)
Q Consensus         9 ~~~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g-~~~~~~~~--~~~~k~y   64 (74)
                      ++|...+|++|||+|++++.+++  +.+.+++||+++||+| ..|.+...  ++++-+.
T Consensus        63 H~H~~~~E~~~Vl~G~~~~~~~~--~~~~l~~Gd~i~i~~~~~~H~~~n~~~~~~~~l~  119 (162)
T 3l2h_A           63 HLHHYEEEAVYVLSGKGTLTMEN--DQYPIAPGDFVGFPCHAAAHSISNDGTETLVCLV  119 (162)
T ss_dssp             BEESSCCEEEEEEESCEEEEETT--EEEEECTTCEEEECTTSCCEEEECCSSSCEEEEE
T ss_pred             ccCCCCCEEEEEEEEEEEEEECC--EEEEeCCCCEEEECCCCceEEeEeCCCCCEEEEE
Confidence            56667899999999999999998  4799999999999998 99999874  4454333

>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}

Probab=99.02  E-value=1.2e-09  Score=65.00  Aligned_cols=48  Identities=13%  Similarity=0.136  Sum_probs=43.3

Q ss_pred             EecCceEEEEEEecEEEEEeCCCceE--EEECCCcEEEEcCCCeEEEEEeee
Q 037642           10 LKFDAEETCYLLKGKVKVYPKGSSDW--VEFGAGDLVTIPKGLSCTWDVSVA   59 (74)
Q Consensus        10 ~~~~~~E~~~vleG~~~~~~~~g~e~--~~~~~GD~v~~p~g~~~~~~~~~~   59 (74)
                      ++.+.+|+++||+|++++.+++.  .  +.+++||.++||+|..|.+...+.
T Consensus        49 ~~~~~~E~~~Vl~G~~~l~~~~~--~~~~~l~~Gd~i~ipa~~~H~~~n~~~   98 (112)
T 2opk_A           49 YDSPQDEWVMVVSGSAGIECEGD--TAPRVMRPGDWLHVPAHCRHRVAWTDG   98 (112)
T ss_dssp             BCCSSEEEEEEEESCEEEEETTC--SSCEEECTTEEEEECTTCCEEEEEECS
T ss_pred             ccCCccEEEEEEeCeEEEEECCE--EEEEEECCCCEEEECCCCcEEEEeCCC
Confidence            45678999999999999999995  5  899999999999999999987764

>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}

Probab=99.02  E-value=1.4e-09  Score=64.70  Aligned_cols=55  Identities=16%  Similarity=0.167  Sum_probs=44.1

Q ss_pred             CCceE---EEecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeee
Q 037642            4 SPGKF---QLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVA   59 (74)
Q Consensus         4 ~pg~~---~~~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~   59 (74)
                      .||..   ++|....|++|||+|++++.++++ +.+.+++||+++||+|..|.+...+.
T Consensus        47 ~pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~~~-~~~~l~~Gd~~~i~~~~~H~~~n~~~  104 (125)
T 3h8u_A           47 HPGQEIASHVHPHGQDTWTVISGEAEYHQGNG-IVTHLKAGDIAIAKPGQVHGAMNSGP  104 (125)
T ss_dssp             CTTCEECCC-CTTCEEEEEEEECEEEEECSTT-CEEEEETTEEEEECTTCCCEEEECSS
T ss_pred             CCCCcCCcccCCCCeEEEEEEEeEEEEEECCC-eEEEeCCCCEEEECCCCEEEeEeCCC
Confidence            45543   344446899999999999999444 57999999999999999999997643

>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}

Probab=98.99  E-value=8.5e-09  Score=61.27  Aligned_cols=61  Identities=16%  Similarity=0.158  Sum_probs=48.3

Q ss_pred             CCce-EEEe-cCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeee-EEEEEEE
Q 037642            4 SPGK-FQLK-FDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVA-VDKYYKF   66 (74)
Q Consensus         4 ~pg~-~~~~-~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~-~~k~y~~   66 (74)
                      .||. ...| .+..|++|||+|++++.+++  +.+.+++||+++||+|..|.+...+. .+-+.++
T Consensus        49 ~pg~~~~~H~H~~~e~~~vl~G~~~~~~~~--~~~~l~~Gd~~~ip~~~~H~~~~~~~~~~~l~v~  112 (126)
T 4e2g_A           49 EPNTEMPAHEHPHEQAGVMLEGTLELTIGE--ETRVLRPGMAYTIPGGVRHRARTFEDGCLVLDIF  112 (126)
T ss_dssp             CTTCEEEEECCSSEEEEEEEEECEEEEETT--EEEEECTTEEEEECTTCCEEEECCTTCEEEEEEE
T ss_pred             CCCCcCCCccCCCceEEEEEEeEEEEEECC--EEEEeCCCCEEEECCCCcEEeEECCCCEEEEEEE
Confidence            3444 2333 34699999999999999988  47999999999999999999998777 5444444

>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}

Probab=98.97  E-value=6e-09  Score=60.20  Aligned_cols=60  Identities=12%  Similarity=0.143  Sum_probs=46.6

Q ss_pred             CCceE-EEec-C-ceEE-EEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEE
Q 037642            4 SPGKF-QLKF-D-AEET-CYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYY   64 (74)
Q Consensus         4 ~pg~~-~~~~-~-~~E~-~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y   64 (74)
                      .||.. ..|. + ..|+ +|||+|++++.++++ +.+.+++||+++||+|..|.+...+..+.+.
T Consensus        41 ~~g~~~~~H~H~~~~e~~~~vl~G~~~~~~~~~-~~~~l~~Gd~~~ip~~~~H~~~~~~~~~~l~  104 (110)
T 2q30_A           41 KAGQELPVHSHNIEGELNIVVLEGEGEFVGDGD-AVIPAPRGAVLVAPISTPHGVRAVTDMKVLV  104 (110)
T ss_dssp             CTTCEEEEECCSSSCEEEEEEEESCEEEECGGG-CEEEECTTEEEEEETTSCEEEEESSSEEEEE
T ss_pred             CCCCcCCcccCCCCccEEEEEEeCEEEEEeCCC-EEEEECCCCEEEeCCCCcEEEEEcCCcEEEE
Confidence            45542 3443 2 3687 899999999999843 4799999999999999999999988865333

>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A

Probab=98.96  E-value=6.7e-09  Score=60.02  Aligned_cols=50  Identities=16%  Similarity=0.236  Sum_probs=42.8

Q ss_pred             ceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEee--eEEEEEE
Q 037642           14 AEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSV--AVDKYYK   65 (74)
Q Consensus        14 ~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~--~~~k~y~   65 (74)
                      ..|++||++|++++.+++  +.+.+++||+++||+|..|.+...+  +++.+++
T Consensus        44 ~~e~~~vl~G~~~~~~~~--~~~~l~~Gd~~~i~~~~~H~~~~~~~~~~~~~~v   95 (113)
T 2gu9_A           44 ADQWLFVVDGAGEAIVDG--HTQALQAGSLIAIERGQAHEIRNTGDTPLKTVNF   95 (113)
T ss_dssp             CEEEEEEEECCEEEEETT--EEEEECTTEEEEECTTCCEEEECCSSSCEEEEEE
T ss_pred             CcEEEEEEeCEEEEEECC--EEEEeCCCCEEEECCCCcEEeEcCCCCCEEEEEE
Confidence            789999999999999988  4799999999999999999998754  4444433

>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}

Probab=98.96  E-value=5.6e-09  Score=65.79  Aligned_cols=56  Identities=11%  Similarity=0.109  Sum_probs=45.9

Q ss_pred             EEecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCC--CeEEEEEee--eEEEEEEE
Q 037642            9 QLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKG--LSCTWDVSV--AVDKYYKF   66 (74)
Q Consensus         9 ~~~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g--~~~~~~~~~--~~~k~y~~   66 (74)
                      ++|...+|++|||+|++++.+++  +.+.+++||+++||+|  ..|.+....  +++-++++
T Consensus        60 H~H~~~eE~~~Vl~G~~~~~~~~--~~~~l~~GD~i~ip~~~~~~H~~~n~~~~~~~~l~v~  119 (163)
T 3i7d_A           60 HYHMEQDEFVMVTEGALVLVDDQ--GEHPMVPGDCAAFPAGDPNGHQFVNRTDAPATFLVVG  119 (163)
T ss_dssp             EEESSCCEEEEEEESCEEEEETT--EEEEECTTCEEEECTTCCCCBEEECCSSSCEEEEEEE
T ss_pred             ccCCCCcEEEEEEECEEEEEECC--EEEEeCCCCEEEECCCCCcceEEEECCCCCEEEEEEE
Confidence            55665689999999999999998  4799999999999999  999998743  45444443

>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}

Probab=98.95  E-value=1.7e-09  Score=62.39  Aligned_cols=50  Identities=12%  Similarity=-0.023  Sum_probs=42.1

Q ss_pred             EEecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEee
Q 037642            9 QLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSV   58 (74)
Q Consensus         9 ~~~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~   58 (74)
                      +.|....|+.|||+|.+++.++++.+.+.+++||+++||+|..|.+....
T Consensus        34 H~H~~~~e~~~Vl~G~~~~~~~~g~~~~~l~~Gd~~~~p~~~~H~~~N~g   83 (97)
T 2fqp_A           34 HRHSMDYVVVPMTTGPLLLETPEGSVTSQLTRGVSYTRPEGVEHNVINPS   83 (97)
T ss_dssp             EECCSCEEEEESSCEEEEEEETTEEEEEEECTTCCEEECTTCEEEEECCS
T ss_pred             EECCCCcEEEEEeecEEEEEeCCCCEEEEEcCCCEEEeCCCCcccCEeCC
Confidence            44544467999999999999998523689999999999999999998765

>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}

Probab=98.95  E-value=9.7e-09  Score=65.07  Aligned_cols=54  Identities=11%  Similarity=0.054  Sum_probs=45.8

Q ss_pred             CceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEee---eEEEEEEEec
Q 037642           13 DAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSV---AVDKYYKFES   68 (74)
Q Consensus        13 ~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~---~~~k~y~~~~   68 (74)
                      +..|++|||+|++.+.+++  +.+.+++||+++||+|..|.+...+   +++-+.++..
T Consensus        75 ~~~E~~~Vl~G~~~~~i~~--~~~~l~~Gd~i~ip~~~~H~~~n~~~~~~~~~l~i~~~  131 (167)
T 3ibm_A           75 EHTHVVMVVRGHAEVVLDD--RVEPLTPLDCVYIAPHAWHQIHATGANEPLGFLCIVDS  131 (167)
T ss_dssp             SSCEEEEEEESEEEEEETT--EEEEECTTCEEEECTTCCEEEEEESSSCCEEEEEEEES
T ss_pred             CCcEEEEEEeCEEEEEECC--EEEEECCCCEEEECCCCcEEEEeCCCCCCEEEEEEEeC
Confidence            5899999999999999999  4799999999999999999998765   5554544443

>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*

Probab=98.95  E-value=2.7e-09  Score=74.45  Aligned_cols=58  Identities=22%  Similarity=0.281  Sum_probs=51.3

Q ss_pred             ecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEEEecC
Q 037642           11 KFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFEST   69 (74)
Q Consensus        11 ~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~~~~   69 (74)
                      ..+.+++++||+|++.+++++. +.+.+++||+++||+|.++++...+..++++++.+.
T Consensus       269 ~~~~~~~~~vleG~~~i~i~g~-~~~~l~~Gd~~~iPag~~h~~~~~~~~~~~l~~~~g  326 (350)
T 1juh_A          269 SFPGACAFQVQEGRVVVQIGDY-AATELGSGDVAFIPGGVEFKYYSEAYFSKVLFVSSG  326 (350)
T ss_dssp             CCSSCEEEEEEESCEEEEETTS-CCEEECTTCEEEECTTCCEEEEESSSSEEEEEEEES
T ss_pred             cCCCcEEEEEEeeEEEEEECCe-EEEEeCCCCEEEECCCCCEEEEecCCeEEEEEEecC
Confidence            3678999999999999999995 369999999999999999999998887777777654

>4h7l_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, cupin, unknown function; 2.45A {Planctomyces limnophilus}

Probab=98.95  E-value=3.2e-09  Score=67.84  Aligned_cols=57  Identities=11%  Similarity=0.036  Sum_probs=46.3

Q ss_pred             EEEecCceEEEEEEe--cEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEEEecC
Q 037642            8 FQLKFDAEETCYLLK--GKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFEST   69 (74)
Q Consensus         8 ~~~~~~~~E~~~vle--G~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~~~~   69 (74)
                      +++|....|++|||+  |++++.+++  +.+.+++||+++||+|..|++.  +++ ++..+..|
T Consensus        60 ~H~H~~~~E~~yVLe~~G~g~v~idg--e~~~l~~GD~v~IPpg~~H~i~--g~l-~~L~I~~P  118 (157)
T 4h7l_A           60 THYHREHQEIYVVLDHAAHATIELNG--QSYPLTKLLAISIPPLVRHRIV--GEA-TIINIVSP  118 (157)
T ss_dssp             CBBCSSCEEEEEEEEECTTCEEEETT--EEEECCTTEEEEECTTCCEEEE--SCE-EEEEEEES
T ss_pred             ceECCCCcEEEEEEecCcEEEEEECC--EEEEeCCCCEEEECCCCeEeeE--CCE-EEEEEECC
Confidence            455656789999999  999999988  5799999999999999999996  454 44444443

>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9

Probab=98.94  E-value=6.3e-09  Score=63.22  Aligned_cols=51  Identities=22%  Similarity=0.191  Sum_probs=43.3

Q ss_pred             CceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEee--eEEEEEE
Q 037642           13 DAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSV--AVDKYYK   65 (74)
Q Consensus        13 ~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~--~~~k~y~   65 (74)
                      +..|++|||+|++++.+++  +.+.+++||+++||+|..+.+...+  +++-+++
T Consensus        77 ~~~E~~~Vl~G~~~~~i~~--~~~~l~~Gd~i~i~~~~~H~~~n~~~~~~~~l~v  129 (133)
T 1o4t_A           77 GEFEIYYILLGEGVFHDNG--KDVPIKAGDVCFTDSGESHSIENTGNTDLEFLAV  129 (133)
T ss_dssp             SEEEEEEEEESEEEEEETT--EEEEEETTEEEEECTTCEEEEECCSSSCEEEEEE
T ss_pred             CccEEEEEEeCEEEEEECC--EEEEeCCCcEEEECCCCcEEeEECCCCCEEEEEE
Confidence            3689999999999999998  5799999999999999999999764  4444443

>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}

Probab=98.93  E-value=1.1e-08  Score=68.21  Aligned_cols=67  Identities=10%  Similarity=0.126  Sum_probs=55.3

Q ss_pred             CCce-EEEe-cCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEee-eEEEEEEEecCCC
Q 037642            4 SPGK-FQLK-FDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSV-AVDKYYKFESTSS   71 (74)
Q Consensus         4 ~pg~-~~~~-~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~-~~~k~y~~~~~~~   71 (74)
                      .||. |..| .+.+|++|||+|.++++++++ +...++|||++++|+|..|.+++.+ |+..+|+...+.+
T Consensus       140 ~PG~~yP~HsHp~EEiy~VLsG~~e~~v~~g-~~~~l~pGd~v~ipsgv~Ha~rt~dePllalwvW~G~~~  209 (217)
T 4b29_A          140 GPGLDYGWHEHLPEELYSVVSGRALFHLRNA-PDLMLEPGQTRFHPANAPHAMTTLTDPILTLVLWRGAGL  209 (217)
T ss_dssp             CSSCEEEEEECSSEEEEEEEEECEEEEETTS-CCEEECTTCEEEECTTCCEEEECCSSCEEEEEEEESTTT
T ss_pred             CCCCcCCCCCCCCceEEEEEeCCEEEEECCC-CEEecCCCCEEEcCCCCceeEEECCccEEEEEEEeCCCC
Confidence            4554 4555 457999999999999999976 5899999999999999999999755 6888888766543

>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}

Probab=98.92  E-value=2.6e-08  Score=59.35  Aligned_cols=55  Identities=20%  Similarity=0.185  Sum_probs=42.5

Q ss_pred             EEecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEee--eEEEEEE
Q 037642            9 QLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSV--AVDKYYK   65 (74)
Q Consensus         9 ~~~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~--~~~k~y~   65 (74)
                      ++|....+++||++|++++.+++  +.+.+++||+++||+|..+.+....  +++.+.+
T Consensus        43 H~H~~~e~~~~vl~G~~~~~i~~--~~~~l~~Gd~i~i~~~~~H~~~~~~~~~~~~~~i   99 (125)
T 3cew_A           43 HSHKQNEEIYGILSGKGFITIDG--EKIELQAGDWLRIAPDGKRQISAASDSPIGFLCI   99 (125)
T ss_dssp             EEESSEEEEEEEEEEEEEEEETT--EEEEEETTEEEEECTTCCEEEEEBTTBCEEEEEE
T ss_pred             ccCCCceEEEEEEeCEEEEEECC--EEEEeCCCCEEEECCCCcEEEEcCCCCCEEEEEE
Confidence            44433345556999999999998  4799999999999999999998763  4443333

>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}

Probab=98.90  E-value=1.1e-08  Score=65.77  Aligned_cols=54  Identities=15%  Similarity=0.051  Sum_probs=46.9

Q ss_pred             EecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeee--EEEEEE
Q 037642           10 LKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVA--VDKYYK   65 (74)
Q Consensus        10 ~~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~--~~k~y~   65 (74)
                      .+....|++|||+|.+++++++  +.+.|++||.++||+|..++|+-...  +|-+++
T Consensus       106 ~~h~gEE~~yVLeG~v~vtl~g--~~~~L~~Gds~~iP~g~~H~~~N~~d~~Arll~V  161 (166)
T 2vpv_A          106 NSFRTYITFHVIQGIVEVTVCK--NKFLSVKGSTFQIPAFNEYAIANRGNDEAKMFFV  161 (166)
T ss_dssp             ECCSEEEEEEEEESEEEEEETT--EEEEEETTCEEEECTTCEEEEEECSSSCEEEEEE
T ss_pred             cCCCceEEEEEEEeEEEEEECC--EEEEEcCCCEEEECCCCCEEEEECCCCCEEEEEE
Confidence            4567899999999999999998  57999999999999999999997664  555555

>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}

Probab=98.89  E-value=9.1e-09  Score=61.28  Aligned_cols=43  Identities=16%  Similarity=0.183  Sum_probs=40.3

Q ss_pred             CceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEe
Q 037642           13 DAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVS   57 (74)
Q Consensus        13 ~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~   57 (74)
                      +..|++||++|++++.+++  +.+.+++||+++||+|..+.+...
T Consensus        53 ~~~Ei~~v~~G~~~~~i~~--~~~~l~~Gd~~~i~~~~~H~~~~~   95 (128)
T 4i4a_A           53 NEYELFIVIQGNAIIRIND--EDFPVTKGDLIIIPLDSEHHVINN   95 (128)
T ss_dssp             SSEEEEEEEESEEEEEETT--EEEEEETTCEEEECTTCCEEEEEC
T ss_pred             CCeEEEEEEeCEEEEEECC--EEEEECCCcEEEECCCCcEEeEeC
Confidence            6899999999999999998  479999999999999999999875

>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}

Probab=98.88  E-value=1.5e-08  Score=66.55  Aligned_cols=62  Identities=13%  Similarity=0.172  Sum_probs=51.8

Q ss_pred             CCceE-EEe-cCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEE-eeeEEEEEEEe
Q 037642            4 SPGKF-QLK-FDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDV-SVAVDKYYKFE   67 (74)
Q Consensus         4 ~pg~~-~~~-~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~-~~~~~k~y~~~   67 (74)
                      +||.. ..| .+.+|+.|||+|++++.+++  +.+.+++||.++||+|..|.+.. .++++.+.++-
T Consensus       161 ~~G~~~~~H~H~~~e~~~Vl~G~~~~~i~g--~~~~l~~Gd~i~ip~~~~H~~~~~~~~~~~ll~~v  225 (227)
T 3rns_A          161 WKGESLDPHKAPGDALVTVLDGEGKYYVDG--KPFIVKKGESAVLPANIPHAVEAETENFKMLLILV  225 (227)
T ss_dssp             CTTCEEEEECCSSEEEEEEEEEEEEEEETT--EEEEEETTEEEEECTTSCEEEECCSSCEEEEEEEE
T ss_pred             CCCCccCCEECCCcEEEEEEeEEEEEEECC--EEEEECCCCEEEECCCCcEEEEeCCCCEEEEEEEE
Confidence            45553 334 34689999999999999998  47999999999999999999999 88887777654

>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18

Probab=98.88  E-value=8.6e-09  Score=60.75  Aligned_cols=45  Identities=11%  Similarity=0.202  Sum_probs=41.0

Q ss_pred             CceEEEEEEecEEEEEeCCCceEE-EECCCcEEEEcCCCeEEEEEeee
Q 037642           13 DAEETCYLLKGKVKVYPKGSSDWV-EFGAGDLVTIPKGLSCTWDVSVA   59 (74)
Q Consensus        13 ~~~E~~~vleG~~~~~~~~g~e~~-~~~~GD~v~~p~g~~~~~~~~~~   59 (74)
                      +..|++||++|++++.+++.  .+ .+++||+++||+|..|.+...+.
T Consensus        46 ~~~e~~~Vl~G~~~~~i~~~--~~~~l~~Gd~i~ip~~~~H~~~~~~~   91 (117)
T 2b8m_A           46 NSYVHLIIIKGEMTLTLEDQ--EPHNYKEGNIVYVPFNVKMLIQNINS   91 (117)
T ss_dssp             SSCEEEEEEESEEEEEETTS--CCEEEETTCEEEECTTCEEEEECCSS
T ss_pred             CCcEEEEEEeCEEEEEECCE--EEEEeCCCCEEEECCCCcEEeEcCCC
Confidence            67899999999999999985  57 99999999999999999997654

>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11

Probab=98.87  E-value=1.2e-08  Score=68.11  Aligned_cols=50  Identities=14%  Similarity=0.135  Sum_probs=43.1

Q ss_pred             EEEecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeee
Q 037642            8 FQLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVA   59 (74)
Q Consensus         8 ~~~~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~   59 (74)
                      +++|...+|+.|||+|++++.+++  +.+.+++||+++||+|..|.+...+.
T Consensus       194 ~h~H~~~~E~~~Vl~G~~~~~i~~--~~~~l~~GD~i~~~~~~~H~~~n~g~  243 (261)
T 1rc6_A          194 YIETHVQEHGAYILSGQGVYNLDN--NWIPVKKGDYIFMGAYSLQAGYGVGR  243 (261)
T ss_dssp             EEEEESSCEEEEEEESEEEEESSS--CEEEEETTCEEEECSSEEEEEEEC--
T ss_pred             cccCCCceEEEEEEEeEEEEEECC--EEEEeCCCCEEEECCCCcEEeEeCCC
Confidence            355656789999999999999998  47999999999999999999988654

>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*

Probab=98.86  E-value=4.1e-08  Score=61.10  Aligned_cols=59  Identities=20%  Similarity=0.107  Sum_probs=47.3

Q ss_pred             EEecCceEEEEEEecEEEEEeCCCc-------eEEEECCCcEEEEcCCCeEEEEEee---eEEEEEEEec
Q 037642            9 QLKFDAEETCYLLKGKVKVYPKGSS-------DWVEFGAGDLVTIPKGLSCTWDVSV---AVDKYYKFES   68 (74)
Q Consensus         9 ~~~~~~~E~~~vleG~~~~~~~~g~-------e~~~~~~GD~v~~p~g~~~~~~~~~---~~~k~y~~~~   68 (74)
                      ++| +..|++||++|++++.++++.       +.+.+++||+++||+|..|.+...+   +++.+.++..
T Consensus        57 H~H-~~~E~~~Vl~G~~~~~~~~~~~~~~~~~~~~~l~~Gd~i~ip~~~~H~~~n~~~~~~~~~l~i~~~  125 (163)
T 1lr5_A           57 HRH-SCEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTFSIPVNDPHQVWNSDEHEDLQVLVIISR  125 (163)
T ss_dssp             EEE-SSCEEEEEEECCEEEEECCSSSSSCCSCEEEEECTTEEEEECTTCCEEEECCCSSSCEEEEEEEES
T ss_pred             eEC-CCCeEEEEEeCEEEEEECCccccccCccEEEEeCCCCEEEECCCCcEEeEeCCCCCCEEEEEEECC
Confidence            455 578999999999999998821       3689999999999999999998765   5655555443

>3hqx_A UPF0345 protein aciad0356; DUF1255,PF06865,PSI2,MCSG, structural genomics, protein STRU initiative, midwest center for structural genomics; 1.66A {Acinetobacter SP} SCOP: b.82.1.0

Probab=98.86  E-value=2.5e-08  Score=60.46  Aligned_cols=61  Identities=16%  Similarity=0.233  Sum_probs=55.5

Q ss_pred             CCce--EEEecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEEE
Q 037642            4 SPGK--FQLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKF   66 (74)
Q Consensus         4 ~pg~--~~~~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~   66 (74)
                      .||.  |.+.+...|++-|++|.+++.+.+..+..++++|+.|.+|++.+...++.+..  .|++
T Consensus        45 ~PGe~~YtF~T~~~E~MevvsG~l~V~Lpg~~eW~~~~aGesF~VpanssF~lkv~~~~--~Y~C  107 (111)
T 3hqx_A           45 LPTEQPLTFETHVPERMEIISGECRVKIADSTESELFRAGQSFYVPGNSLFKIETDEVL--DYVC  107 (111)
T ss_dssp             CCCSSCEEEECSSCEEEEEEESEEEEEETTCSSCEEEETTCEEEECTTCEEEEECSSCE--EEEE
T ss_pred             eccccceEEcCCCcEEEEEEEeEEEEEcCCcccCEEeCCCCEEEECCCCcEEEEECcce--eEEE
Confidence            4888  99999999999999999999999987789999999999999999999999864  4554

>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15

Probab=98.85  E-value=2.7e-08  Score=63.25  Aligned_cols=46  Identities=17%  Similarity=0.314  Sum_probs=41.4

Q ss_pred             cCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeee
Q 037642           12 FDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVA   59 (74)
Q Consensus        12 ~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~   59 (74)
                      .+..|++|||+|++++.+++  +.+.+++||+++||+|..|.+...+.
T Consensus       124 h~~~E~~~Vl~G~~~~~~~~--~~~~l~~GD~i~i~~~~~H~~~n~~~  169 (192)
T 1y9q_A          124 LGVIEYIHVLEGIMKVFFDE--QWHELQQGEHIRFFSDQPHGYAAVTE  169 (192)
T ss_dssp             TTCEEEEEEEESCEEEEETT--EEEEECTTCEEEEECSSSEEEEESSS
T ss_pred             CCCEEEEEEEEeEEEEEECC--EEEEeCCCCEEEEcCCCCeEeECCCC
Confidence            34689999999999999987  57999999999999999999998643

>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A

Probab=98.85  E-value=2e-08  Score=64.15  Aligned_cols=55  Identities=16%  Similarity=0.209  Sum_probs=44.6

Q ss_pred             CCceE--EEecCceEEEEEEecEEEEEeC--CCceEEEECCCcEEEEcCCCeEEEEEee
Q 037642            4 SPGKF--QLKFDAEETCYLLKGKVKVYPK--GSSDWVEFGAGDLVTIPKGLSCTWDVSV   58 (74)
Q Consensus         4 ~pg~~--~~~~~~~E~~~vleG~~~~~~~--~g~e~~~~~~GD~v~~p~g~~~~~~~~~   58 (74)
                      +||..  ..|.+.+|+.|||+|++++.+.  ++.+.+.+++||+++||+|..|.+.-.+
T Consensus        49 ~pg~~~~pHh~~a~E~~yVl~G~~~v~v~~~~~~~~~~l~~GDv~~~P~g~~H~~~N~g  107 (178)
T 1dgw_A           49 KPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRDTYKLDQGDAIKIQAGTPFYLINPD  107 (178)
T ss_dssp             CTTEEEEEEEESSEEEEEEEESEEEEEEEETTEEEEEEEETTEEEEECTTCCEEEEECC
T ss_pred             cCCcEecCcCCCCCEEEEEEeEEEEEEEEeCCCcEEEEECCCCEEEECCCCeEEEEeCC
Confidence            56653  2256789999999999999875  2225799999999999999999998864

>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}

Probab=98.84  E-value=2.6e-08  Score=65.47  Aligned_cols=60  Identities=8%  Similarity=0.146  Sum_probs=49.9

Q ss_pred             CCceE-EEe-cCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEE
Q 037642            4 SPGKF-QLK-FDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYK   65 (74)
Q Consensus         4 ~pg~~-~~~-~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~   65 (74)
                      +||.- ..| .+.+++.|||+|++++++++  ++..++|||.+++|+|.+|.+...++++-+.+
T Consensus        45 ~~G~~~~~h~h~~~~~~~Vl~G~~~~~i~~--~~~~l~~Gd~~~~p~~~~H~~~a~~~~~~l~i  106 (227)
T 3rns_A           45 AKDEEITAEAMLGNRYYYCFNGNGEIFIEN--NKKTISNGDFLEITANHNYSIEARDNLKLIEI  106 (227)
T ss_dssp             CTTCEEEECSCSSCEEEEEEESEEEEEESS--CEEEEETTEEEEECSSCCEEEEESSSEEEEEE
T ss_pred             CCCCccCccccCCCEEEEEEeCEEEEEECC--EEEEECCCCEEEECCCCCEEEEECCCcEEEEE
Confidence            35543 333 47899999999999999998  47999999999999999999999988765544

>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}

Probab=98.84  E-value=2e-08  Score=61.91  Aligned_cols=55  Identities=13%  Similarity=0.011  Sum_probs=44.5

Q ss_pred             EEecCceEEEEEEecEEEEEeCCCceE------EEECCCcEEEEcCCCeEEEEEee--eEEEEEE
Q 037642            9 QLKFDAEETCYLLKGKVKVYPKGSSDW------VEFGAGDLVTIPKGLSCTWDVSV--AVDKYYK   65 (74)
Q Consensus         9 ~~~~~~~E~~~vleG~~~~~~~~g~e~------~~~~~GD~v~~p~g~~~~~~~~~--~~~k~y~   65 (74)
                      ++|...+|++|||+|.+++.+++.  .      +.+++||+++||+|..|.+...+  +++.+.+
T Consensus        59 H~H~~~~E~~~Vl~G~~~~~i~~~--~~~~~~~~~l~~Gd~i~ip~g~~H~~~n~~~~~~~~l~i  121 (148)
T 2oa2_A           59 EIHPHLDQFLRVEEGRGLVQMGHR--QDNLHFQEEVFDDYAILIPAGTWHNVRNTGNRPLKLYSI  121 (148)
T ss_dssp             BCCTTCEEEEEEEESEEEEEEESB--TTBCCEEEEEETTCEEEECTTCEEEEEECSSSCEEEEEE
T ss_pred             eECCCCcEEEEEEeCEEEEEECCc--cccceeeEEECCCCEEEECCCCcEEEEECCCCCEEEEEE
Confidence            344446799999999999999985  4      89999999999999999998754  4443333

>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A

Probab=98.84  E-value=2e-08  Score=63.95  Aligned_cols=53  Identities=8%  Similarity=0.120  Sum_probs=43.6

Q ss_pred             cCceEEEEEEecEEEEEeCCC--ceEEEECCCcEEEEcCCCeEEEEEe---eeEEEEE
Q 037642           12 FDAEETCYLLKGKVKVYPKGS--SDWVEFGAGDLVTIPKGLSCTWDVS---VAVDKYY   64 (74)
Q Consensus        12 ~~~~E~~~vleG~~~~~~~~g--~e~~~~~~GD~v~~p~g~~~~~~~~---~~~~k~y   64 (74)
                      .+..|++|||+|++++.++++  .+.+.+++||.++||+|..|.|...   ++++.+.
T Consensus       138 h~~~E~~~Vl~G~~~~~~~~~~~~~~~~l~~GD~~~~~~~~~H~~~n~~~~~~~~~l~  195 (198)
T 2bnm_A          138 HAGNEFLFVLEGEIHMKWGDKENPKEALLPTGASMFVEEHVPHAFTAAKGTGSAKLIA  195 (198)
T ss_dssp             CSSCEEEEEEESCEEEEESCTTSCEEEEECTTCEEEECTTCCEEEEESTTSCCEEEEE
T ss_pred             CCCeEEEEEEeeeEEEEECCcCCcccEEECCCCEEEeCCCCceEEEecCCCCCeEEEE
Confidence            456899999999999999882  0269999999999999999999987   4554433

>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A

Probab=98.81  E-value=1.3e-08  Score=61.46  Aligned_cols=52  Identities=21%  Similarity=0.342  Sum_probs=42.6

Q ss_pred             CceEEEEEEecEEEEE--eCCCceEEEECCCcEEEEcCCCeEEEEEee--eEEEEEEE
Q 037642           13 DAEETCYLLKGKVKVY--PKGSSDWVEFGAGDLVTIPKGLSCTWDVSV--AVDKYYKF   66 (74)
Q Consensus        13 ~~~E~~~vleG~~~~~--~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~--~~~k~y~~   66 (74)
                      +..|++|||+|++++.  +++  +.+.+++||+++||+|..|.+...+  +++-++++
T Consensus        58 ~~~e~~~vl~G~~~~~~~~~~--~~~~l~~Gd~~~ip~~~~H~~~~~~~~~~~~l~i~  113 (145)
T 3ht1_A           58 EWEHEIYVLEGSMGLVLPDQG--RTEEVGPGEAIFIPRGEPHGFVTGPGQTCRFLVVA  113 (145)
T ss_dssp             SSCEEEEEEEECEEEEEGGGT--EEEEECTTCEEEECTTCCBEEECCTTCCEEEEEEE
T ss_pred             CCceEEEEEEeEEEEEEeECC--EEEEECCCCEEEECCCCeEEeEcCCCCCEEEEEEE
Confidence            4567789999999999  887  5799999999999999999998854  44444444

>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10

Probab=98.81  E-value=3.3e-08  Score=59.34  Aligned_cols=51  Identities=16%  Similarity=0.139  Sum_probs=43.2

Q ss_pred             CceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEee--eEEEEEE
Q 037642           13 DAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSV--AVDKYYK   65 (74)
Q Consensus        13 ~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~--~~~k~y~   65 (74)
                      +..|++||++|++++.+++.  .+.+++||+++||+|..+.+...+  +++.+.+
T Consensus        67 ~~~e~~~Vl~G~~~~~i~~~--~~~l~~Gd~i~ip~g~~H~~~~~~~~~~~~l~v  119 (126)
T 1vj2_A           67 PWEHEIFVLKGKLTVLKEQG--EETVEEGFYIFVEPNEIHGFRNDTDSEVEFLCL  119 (126)
T ss_dssp             SSCEEEEEEESEEEEECSSC--EEEEETTEEEEECTTCCEEEECCSSSCEEEEEE
T ss_pred             CCcEEEEEEEeEEEEEECCE--EEEECCCCEEEECCCCcEEeEeCCCCCEEEEEE
Confidence            47899999999999999984  699999999999999999998765  4443333

>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}

Probab=98.80  E-value=4.9e-08  Score=61.45  Aligned_cols=55  Identities=13%  Similarity=0.144  Sum_probs=45.9

Q ss_pred             CceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEee--eEEEEEEEecC
Q 037642           13 DAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSV--AVDKYYKFEST   69 (74)
Q Consensus        13 ~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~--~~~k~y~~~~~   69 (74)
                      +..|++|||+|++++.+++  +.+.+++||+++||+|..|.+...+  +++-++++...
T Consensus        63 ~~~E~~~Vl~G~~~v~v~g--~~~~l~~Gd~i~ip~~~~H~~~n~g~~~~~~l~i~~~~  119 (156)
T 3kgz_A           63 AHVHAVMIHRGHGQCLVGE--TISDVAQGDLVFIPPMTWHQFRANRGDCLGFLCVVNAA  119 (156)
T ss_dssp             SSCEEEEEEEEEEEEEETT--EEEEEETTCEEEECTTCCEEEECCSSSCEEEEEEEESS
T ss_pred             CCcEEEEEEeCEEEEEECC--EEEEeCCCCEEEECCCCcEEeEeCCCCCEEEEEEEeCC
Confidence            4689999999999999998  5799999999999999999998744  46555555543

>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*

Probab=98.79  E-value=4.8e-08  Score=66.21  Aligned_cols=49  Identities=22%  Similarity=0.408  Sum_probs=43.4

Q ss_pred             EEecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeee
Q 037642            9 QLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVA   59 (74)
Q Consensus         9 ~~~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~   59 (74)
                      ++|...+|++|||+|++++.+++  +.+.+++||+++||+|..|.+...+.
T Consensus        62 h~H~~~~e~~~Vl~G~~~~~~~~--~~~~l~~Gd~~~~p~~~~H~~~n~~~  110 (337)
T 1y3t_A           62 HVHKDTHEGILVLDGKLELTLDG--ERYLLISGDYANIPAGTPHSYRMQSH  110 (337)
T ss_dssp             EECTTCCEEEEEEESCEEEEETT--EEEEECTTCEEEECTTCCEEEEECST
T ss_pred             eeCCCceEEEEEEECEEEEEECC--EEEEECCCCEEEECCCCcEEEEECCC
Confidence            45544899999999999999987  57999999999999999999998765

>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*

Probab=98.78  E-value=4.5e-08  Score=66.39  Aligned_cols=56  Identities=16%  Similarity=0.357  Sum_probs=46.3

Q ss_pred             EEecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeee-EEEEEEE
Q 037642            9 QLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVA-VDKYYKF   66 (74)
Q Consensus         9 ~~~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~-~~k~y~~   66 (74)
                      ++|...+|++|||+|++++.+++  +.+.+++||+++||+|..|.+..... .+.+.++
T Consensus       234 h~H~~~~e~~~vl~G~~~~~i~~--~~~~l~~GD~~~ip~~~~H~~~n~~~~~~~l~v~  290 (337)
T 1y3t_A          234 HYHEYHTETFYCLEGQMTMWTDG--QEIQLNPGDFLHVPANTVHSYRLDSHYTKMVGVL  290 (337)
T ss_dssp             EECSSCEEEEEEEESCEEEEETT--EEEEECTTCEEEECTTCCEEEEECSSSEEEEEEE
T ss_pred             cCCCCCcEEEEEEeCEEEEEECC--EEEEECCCCEEEECCCCeEEEEECCCCeEEEEEE
Confidence            45544799999999999999988  57999999999999999999998764 4333333

>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}

Probab=98.78  E-value=7.1e-08  Score=66.42  Aligned_cols=65  Identities=18%  Similarity=0.386  Sum_probs=49.6

Q ss_pred             CCceE---EEecCceEEEEEEecEEEEEe---CCCceEEEECCCcEEEEcCCCeEEEEEee--eEEEEEEEec
Q 037642            4 SPGKF---QLKFDAEETCYLLKGKVKVYP---KGSSDWVEFGAGDLVTIPKGLSCTWDVSV--AVDKYYKFES   68 (74)
Q Consensus         4 ~pg~~---~~~~~~~E~~~vleG~~~~~~---~~g~e~~~~~~GD~v~~p~g~~~~~~~~~--~~~k~y~~~~   68 (74)
                      .||..   ++|.+.+|++|||+|++++++   ++..+.+.+++||+++||+|..|.+...+  +++-+.++..
T Consensus        60 ~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~g~~~~~~l~~GD~~~ip~g~~H~~~n~~~~~~~~l~v~~~  132 (361)
T 2vqa_A           60 EPGAIRELHWHANAAEWAYVMEGRTRITLTSPEGKVEIADVDKGGLWYFPRGWGHSIEGIGPDTAKFLLVFND  132 (361)
T ss_dssp             CTTCEEEEEECTTCCEEEEEEESEEEEEEECTTSCEEEEEEETTEEEEECTTCEEEEEECSSSCEEEEEEESS
T ss_pred             cCCCCCCceeCCCCCEEEEEEEeEEEEEEEeCCCcEEEEEEcCCCEEEECCCCeEEEEeCCCCCEEEEEEECC
Confidence            35543   566658999999999999999   44224689999999999999999999875  5544444443

>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11

Probab=98.78  E-value=2.8e-08  Score=66.15  Aligned_cols=56  Identities=13%  Similarity=0.046  Sum_probs=48.5

Q ss_pred             ecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEEEec
Q 037642           11 KFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFES   68 (74)
Q Consensus        11 ~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~~~   68 (74)
                      +....|..|||+|++.+.+++  +.+.++|||.++++++.++.|...+.-...|++.+
T Consensus       183 ~h~~ee~~~vLeG~~~~~~~~--~~~~l~~GD~~~~~~~~pH~~~n~g~~~~~yl~~k  238 (246)
T 1sfn_A          183 VHYMEHGLLMLEGEGLYKLEE--NYYPVTAGDIIWMGAHCPQWYGALGRNWSKYLLYK  238 (246)
T ss_dssp             CCSSCEEEEEEECEEEEEETT--EEEEEETTCEEEECTTCCEEEEEESSSCEEEEEEE
T ss_pred             CCCceEEEEEEECEEEEEECC--EEEEcCCCCEEEECCCCCEEEEcCCCCCEEEEEEE
Confidence            345789999999999999998  57999999999999999999998877556777654

>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A

Probab=98.76  E-value=7e-08  Score=62.43  Aligned_cols=60  Identities=25%  Similarity=0.204  Sum_probs=45.9

Q ss_pred             EEecCceEEEEEEecEEEEEeCCC----ce--EEEECCCcEEEEcCCCeEEEEEee--eEEEEEEEec
Q 037642            9 QLKFDAEETCYLLKGKVKVYPKGS----SD--WVEFGAGDLVTIPKGLSCTWDVSV--AVDKYYKFES   68 (74)
Q Consensus         9 ~~~~~~~E~~~vleG~~~~~~~~g----~e--~~~~~~GD~v~~p~g~~~~~~~~~--~~~k~y~~~~   68 (74)
                      ++|....|+.|||+|++++.+.++    ++  ...+++||+++||+|..|.+...+  +++.+.++..
T Consensus        88 H~H~~~~E~~~Vl~G~~~v~~~~~~~~~~~~~~~~l~~GD~~~iP~g~~H~~~N~g~~~~~~l~v~~~  155 (201)
T 1fi2_A           88 HIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNS  155 (201)
T ss_dssp             EECTTCCEEEEEEESEEEEEEECCGGGTTCEEEEEEETTCEEEECTTCCEEEEECSSSCEEEEEEESS
T ss_pred             eECCCCCEEEEEEeCEEEEEEEcCCCCCCeEEEEEECCCCEEEECCCCeEEEEeCCCCCEEEEEEECC
Confidence            445556899999999999988532    24  689999999999999999998653  4555544443

>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*

Probab=98.76  E-value=9.7e-08  Score=63.19  Aligned_cols=53  Identities=13%  Similarity=-0.048  Sum_probs=46.0

Q ss_pred             CceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEe--eeEEEEEEEe
Q 037642           13 DAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVS--VAVDKYYKFE   67 (74)
Q Consensus        13 ~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~--~~~~k~y~~~   67 (74)
                      +..|++|||+|++++.+++  +.+.+++||+++||+|..|.+...  ++++-++++.
T Consensus       165 ~~~e~~~Vl~G~~~~~i~~--~~~~l~~Gd~i~ip~~~~H~~~n~~~~~~~~l~v~~  219 (243)
T 3h7j_A          165 RNEQIGICIGGGYDMTVEG--CTVEMKFGTAYFCEPREDHGAINRSEKESKSINIFF  219 (243)
T ss_dssp             SSEEEEEECSSCEEEEETT--EEEEECTTCEEEECTTCCEEEEECSSSCEEEEEEEE
T ss_pred             CCcEEEEEEECEEEEEECC--EEEEECCCCEEEECCCCcEEeEeCCCCCEEEEEEEc
Confidence            4689999999999999999  479999999999999999999987  4566666654

>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}

Probab=98.75  E-value=3.4e-08  Score=62.82  Aligned_cols=54  Identities=19%  Similarity=0.152  Sum_probs=44.9

Q ss_pred             CceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEee--eEEEEEEEec
Q 037642           13 DAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSV--AVDKYYKFES   68 (74)
Q Consensus        13 ~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~--~~~k~y~~~~   68 (74)
                      +..|++||++|++++.+++  +.+.+++||+++||+|..|.+...+  +++-++++..
T Consensus        72 ~~~E~~~Vl~G~~~~~v~g--~~~~l~~GD~i~ip~g~~H~~~n~~~~~~~~l~i~~~  127 (166)
T 3jzv_A           72 QHAHGVMILKGRGHAMVGR--AVSAVAPYDLVTIPGWSWHQFRAPADEALGFLCMVNA  127 (166)
T ss_dssp             SSCEEEEEEEECEEEEETT--EEEEECTTCEEEECTTCCEEEECCTTSCEEEEEEEES
T ss_pred             CCcEEEEEEeCEEEEEECC--EEEEeCCCCEEEECCCCcEEeEeCCCCCEEEEEEEcc
Confidence            4689999999999999998  4799999999999999999998643  4555555543

>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}

Probab=98.75  E-value=3.9e-08  Score=61.81  Aligned_cols=58  Identities=12%  Similarity=0.154  Sum_probs=48.8

Q ss_pred             EEEecCceEEEEEEecEEEEEeCCC------ceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEE
Q 037642            8 FQLKFDAEETCYLLKGKVKVYPKGS------SDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYK   65 (74)
Q Consensus         8 ~~~~~~~~E~~~vleG~~~~~~~~g------~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~   65 (74)
                      ++.|.+.||+++||+|++++...++      ...+.++||+++++|+|..|.-...+.++-..+
T Consensus        44 ~h~H~~tDE~Fivl~G~l~i~~rd~~~~~~~d~~V~l~~Ge~yvVPkGveH~p~a~~e~~vLLi  107 (140)
T 3d0j_A           44 LEIHHSTDEQFILSAGKAILITAEKENDKFNIELTLMEKGKVYNVPAECWFYSITQKDTKMMYV  107 (140)
T ss_dssp             EEEESSCCEEEEEEESCEEEEEEEEETTEEEEEEEECCTTCCEEECTTCEEEEEECTTCEEEEE
T ss_pred             hccCCCCCeEEEEEecEEEEEEecCcCCCCccceEEecCCCEEEeCCCccCcccCCCceEEEEE
Confidence            4677889999999999999998842      136899999999999999999999888755444

>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A*

Probab=98.75  E-value=7.2e-08  Score=62.11  Aligned_cols=55  Identities=20%  Similarity=0.219  Sum_probs=42.9

Q ss_pred             CceEEEEEEecEEEEEeCCCc-e--EEEECCCcEEEEcCCCeEEEEEee--eEEEEEEEe
Q 037642           13 DAEETCYLLKGKVKVYPKGSS-D--WVEFGAGDLVTIPKGLSCTWDVSV--AVDKYYKFE   67 (74)
Q Consensus        13 ~~~E~~~vleG~~~~~~~~g~-e--~~~~~~GD~v~~p~g~~~~~~~~~--~~~k~y~~~   67 (74)
                      +..|++|||+|++.+.+++.. +  .+.+++||+++||+|..|.+...+  +++-+.++.
T Consensus        95 ~~~E~~~Vl~G~~~~~i~~~~g~~~~~~l~~GD~v~ip~g~~H~~~N~g~~~~~~l~v~~  154 (190)
T 1x82_A           95 DRAEVYVALKGKGGMLLQTPEGDAKWISMEPGTVVYVPPYWAHRTVNIGDEPFIFLAIYP  154 (190)
T ss_dssp             TCCEEEEEEESCEEEEEECTTCCEEEEEECTTCEEEECTTCEEEEEECSSSCEEEEEEEE
T ss_pred             CCCEEEEEEcCEEEEEEcCcCCcEEEEEECCCcEEEECCCCeEEEEECCcccEEEEEEEC
Confidence            347999999999999998841 0  289999999999999999998754  454333333

>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11

Probab=98.75  E-value=6.5e-08  Score=64.36  Aligned_cols=51  Identities=18%  Similarity=0.167  Sum_probs=44.5

Q ss_pred             ceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEEE
Q 037642           14 AEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKF   66 (74)
Q Consensus        14 ~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~   66 (74)
                      .+|++|||+|++++.+++  +.+.|++||.++||+|..|.+...++.+-+++.
T Consensus        68 ~ee~~~Vl~G~~~~~~~~--~~~~l~~Gd~~~~p~~~~H~~~n~~~~~~l~v~  118 (246)
T 1sfn_A           68 YQRFAFVLSGEVDVAVGG--ETRTLREYDYVYLPAGEKHMLTAKTDARVSVFE  118 (246)
T ss_dssp             SEEEEEEEEEEEEEECSS--CEEEECTTEEEEECTTCCCEEEEEEEEEEEEEE
T ss_pred             eeEEEEEEECEEEEEECC--EEEEECCCCEEEECCCCCEEEEeCCCEEEEEEE
Confidence            789999999999999998  479999999999999999999988766544443

>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11

Probab=98.73  E-value=5.8e-08  Score=65.87  Aligned_cols=53  Identities=15%  Similarity=0.213  Sum_probs=45.1

Q ss_pred             cCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEe--eeEEEEEEE
Q 037642           12 FDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVS--VAVDKYYKF   66 (74)
Q Consensus        12 ~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~--~~~~k~y~~   66 (74)
                      ...+|++|||+|++++.+++  +.+.+++||.++||+|..|.+...  ++++.+.+.
T Consensus        88 H~~eE~~~Vl~G~l~v~v~g--~~~~L~~GD~i~ip~~~~H~~~N~g~~~~~~l~v~  142 (278)
T 1sq4_A           88 PNAEAVLFVVEGELSLTLQG--QVHAMQPGGYAFIPPGADYKVRNTTGQHTRFHWIR  142 (278)
T ss_dssp             TTEEEEEEEEESCEEEEESS--CEEEECTTEEEEECTTCCEEEECCSSSCEEEEEEE
T ss_pred             CCceEEEEEEeCEEEEEECC--EEEEECCCCEEEECCCCcEEEEECCCCCEEEEEEE
Confidence            45799999999999999998  479999999999999999999976  455544444

>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11

Probab=98.72  E-value=7.3e-08  Score=64.29  Aligned_cols=52  Identities=15%  Similarity=0.253  Sum_probs=44.1

Q ss_pred             CceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEe--eeEEEEEEE
Q 037642           13 DAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVS--VAVDKYYKF   66 (74)
Q Consensus        13 ~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~--~~~~k~y~~   66 (74)
                      ..+|+.|||+|++++.+++  +.+.|++||.++||+|..|.+...  ++++-+.+.
T Consensus        80 ~~ee~~~Vl~G~l~~~~~~--~~~~L~~Gd~~~~~~~~~H~~~N~~~~~~~~l~v~  133 (261)
T 1rc6_A           80 GIETFLYVISGNITAKAEG--KTFALSEGGYLYCPPGSLMTFVNAQAEDSQIFLYK  133 (261)
T ss_dssp             TEEEEEEEEESEEEEEETT--EEEEEETTEEEEECTTCCCEEEECSSSCEEEEEEE
T ss_pred             CceEEEEEEEeEEEEEECC--EEEEECCCCEEEECCCCCEEEEeCCCCCEEEEEEE
Confidence            3579999999999999988  579999999999999999999987  455444444

>2arc_A ARAC, arabinose operon regulatory protein; transcription factor, carbohydrate binding, coiled-coil, jelly roll; HET: ARA; 1.50A {Escherichia coli} SCOP: b.82.4.1 PDB: 2aac_A* 1xja_A 2ara_A

Probab=98.71  E-value=2.1e-07  Score=56.57  Aligned_cols=53  Identities=13%  Similarity=0.167  Sum_probs=44.5

Q ss_pred             cCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEee---eEEEEEEE
Q 037642           12 FDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSV---AVDKYYKF   66 (74)
Q Consensus        12 ~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~---~~~k~y~~   66 (74)
                      .+..|++||++|++++.+++  +.+.+++||+++||+|..|.+....   +.+..++.
T Consensus        36 h~~~~i~~v~~G~~~~~i~~--~~~~l~~Gd~~~i~p~~~H~~~~~~~~~~~~~~~i~   91 (164)
T 2arc_A           36 MKGYILNLTIRGQGVVKNQG--REFVCRPGDILLFPPGEIHHYGRHPEAREWYHQWVY   91 (164)
T ss_dssp             CSSEEEEEEEEECEEEEETT--EEEEECTTCEEEECTTCCEEEEECTTSSEEEEEEEE
T ss_pred             CCceEEEEEEEeEEEEEECC--EEEEecCCeEEEEcCCCCEEEEeCCCCCcEEEEEEE
Confidence            46789999999999999998  4799999999999999999998753   35444443

>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11

Probab=98.71  E-value=6.6e-08  Score=65.05  Aligned_cols=45  Identities=16%  Similarity=0.214  Sum_probs=41.4

Q ss_pred             CceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeee
Q 037642           13 DAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVA   59 (74)
Q Consensus        13 ~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~   59 (74)
                      ..+|+.|||+|++++.+++  +.+.+++||+++||+|..|.+...+.
T Consensus       202 ~~~E~~yVl~G~~~~~i~~--~~~~l~~GD~i~i~~~~~H~~~n~~~  246 (274)
T 1sef_A          202 VQEHGAYLISGQGMYNLDN--EWYPVEKGDYIFMSAYVPQAAYAVGR  246 (274)
T ss_dssp             SCCEEEEEEECEEEEEETT--EEEEEETTCEEEECTTCCEEEEEECS
T ss_pred             cCeEEEEEEeCEEEEEECC--EEEEECCCCEEEECCCCCEEEEeCCC
Confidence            5689999999999999998  57999999999999999999998755

>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*

Probab=98.69  E-value=1.1e-07  Score=61.70  Aligned_cols=63  Identities=16%  Similarity=0.153  Sum_probs=47.9

Q ss_pred             EEEe-cCceEEEEEEecEEEEEeCCC--ceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEEEecCC
Q 037642            8 FQLK-FDAEETCYLLKGKVKVYPKGS--SDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFESTS   70 (74)
Q Consensus         8 ~~~~-~~~~E~~~vleG~~~~~~~~g--~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~~~~~   70 (74)
                      +.|| .+.+|++|+|+|++.|.+.++  ...+.+++||++++|+|..|.-.-.++=-..|++....
T Consensus        48 ~d~H~h~~dE~FyvlkG~m~i~v~d~g~~~~v~l~eGE~f~lP~gvpH~P~r~~~e~~~lviE~~r  113 (174)
T 1yfu_A           48 TDYHDDPLEEFFYQLRGNAYLNLWVDGRRERADLKEGDIFLLPPHVRHSPQRPEAGSACLVIERQR  113 (174)
T ss_dssp             CCEEECSSCEEEEEEESCEEEEEEETTEEEEEEECTTCEEEECTTCCEEEEBCCTTCEEEEEEECC
T ss_pred             ccCcCCCCceEEEEEeeEEEEEEEcCCceeeEEECCCCEEEeCCCCCcCccccCCCCEEEEEEeCC
Confidence            3444 368999999999999998763  13699999999999999999886555223566665543

>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}

Probab=98.68  E-value=4.9e-08  Score=62.88  Aligned_cols=53  Identities=9%  Similarity=0.263  Sum_probs=43.9

Q ss_pred             CceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEee--eEEEEEEEe
Q 037642           13 DAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSV--AVDKYYKFE   67 (74)
Q Consensus        13 ~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~--~~~k~y~~~   67 (74)
                      ...|+.|||+|++++.++++ +.+.|++||.+ ||+|..|.|....  +++.++++.
T Consensus        98 ~~eE~~~VLeGel~l~ld~g-e~~~L~~GDsi-~~~g~~H~~~N~g~~~ar~l~V~~  152 (172)
T 3es1_A           98 NSIDYGIVLEGEIELELDDG-AKRTVRQGGII-VQRGTNHLWRNTTDKPCRIAFILI  152 (172)
T ss_dssp             SEEEEEEEEESCEEEECGGG-CEEEECTTCEE-EECSCCBEEECCSSSCEEEEEEEE
T ss_pred             CceEEEEEEeCEEEEEECCC-eEEEECCCCEE-EeCCCcEEEEeCCCCCEEEEEEEc
Confidence            45789999999999999855 57999999999 9999999998764  565555544

>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B

Probab=98.68  E-value=2.9e-07  Score=66.46  Aligned_cols=65  Identities=14%  Similarity=0.132  Sum_probs=50.3

Q ss_pred             CCceE--EEecCceEEEEEEecEEEEEe--CCCceEEEECCCcEEEEcCCCeEEEEEee---eEEEEEEEec
Q 037642            4 SPGKF--QLKFDAEETCYLLKGKVKVYP--KGSSDWVEFGAGDLVTIPKGLSCTWDVSV---AVDKYYKFES   68 (74)
Q Consensus         4 ~pg~~--~~~~~~~E~~~vleG~~~~~~--~~g~e~~~~~~GD~v~~p~g~~~~~~~~~---~~~k~y~~~~   68 (74)
                      +||..  ..|.+.+|+.|||+|++++.+  .++.+...+++||+++||+|..|.+.-.+   +++-+.++..
T Consensus        94 ~Pgg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~~~~~l~~GDv~~~P~G~~H~~~N~g~~~~l~~l~v~~~  165 (445)
T 2cav_A           94 KPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRDTYKLDQGDAIKIQAGTPFYLINPDNNQNLRILKFAIT  165 (445)
T ss_dssp             CSSEEEEEEEESSEEEEEEEESEEEEEEEETTEEEEEEEETTEEEEECTTCCEEEEECCSSCCEEEEEEEEC
T ss_pred             CCCcCccCcCCCCceEEEEEeCEEEEEEEeCCCCEEEEecCCCEEEECCCCcEEEEECCCCCCEEEEEEecc
Confidence            56764  236778999999999999986  33336899999999999999999999864   5555544553

>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A

Probab=98.68  E-value=2.3e-07  Score=66.74  Aligned_cols=64  Identities=17%  Similarity=0.096  Sum_probs=49.5

Q ss_pred             CCceE--EEecCceEEEEEEecEEEEEe--CCCceEEEECCCcEEEEcCCCeEEEEEee---eEEEEEEEe
Q 037642            4 SPGKF--QLKFDAEETCYLLKGKVKVYP--KGSSDWVEFGAGDLVTIPKGLSCTWDVSV---AVDKYYKFE   67 (74)
Q Consensus         4 ~pg~~--~~~~~~~E~~~vleG~~~~~~--~~g~e~~~~~~GD~v~~p~g~~~~~~~~~---~~~k~y~~~   67 (74)
                      +||..  ..|.+.+|++|||+|++++.+  +++.+...+++||+++||+|..|.+.-.+   +++.+.++.
T Consensus        69 ~PGg~~~pHh~~a~Ei~yVl~G~g~v~~v~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~~e~l~~l~~~~  139 (434)
T 2ea7_A           69 KPNTLLLPHHADADFLLVVLNGTAVLTLVNPDSRDSYILEQGHAQKIPAGTTFFLVNPDDNENLRIIKLAI  139 (434)
T ss_dssp             CTTEEEEEEEESEEEEEEEEESEEEEEEECSSCEEEEEEETTEEEEECTTCEEEEEECCSSCCEEEEEEEE
T ss_pred             cCCcCccCccCCCceEEEEEecEEEEEEEeCCCCEEEEeCCCCEEEECCCccEEEEeCCCCCCeEEEEEec
Confidence            46765  236778999999999999987  33236799999999999999999998764   454444444

>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9

Probab=98.66  E-value=1.1e-07  Score=58.72  Aligned_cols=45  Identities=18%  Similarity=0.175  Sum_probs=40.6

Q ss_pred             CceEEEEEEecEEEEEeCCCceE-EEECCCcEEEEcCCCeEEEEEeee
Q 037642           13 DAEETCYLLKGKVKVYPKGSSDW-VEFGAGDLVTIPKGLSCTWDVSVA   59 (74)
Q Consensus        13 ~~~E~~~vleG~~~~~~~~g~e~-~~~~~GD~v~~p~g~~~~~~~~~~   59 (74)
                      +..|++||++|++++.+++.  . +.+++||+++||+|..+.+.....
T Consensus        67 ~~~E~~~Vl~G~~~~~~~~~--~~~~l~~Gd~i~ip~~~~H~~~n~~~  112 (147)
T 2f4p_A           67 PGGQILIVTRGKGFYQERGK--PARILKKGDVVEIPPNVVHWHGAAPD  112 (147)
T ss_dssp             TTCEEEEEEEEEEEEEETTS--CCEEEETTCEEEECTTCCEEEEEBTT
T ss_pred             CCceEEEEEeCEEEEEECCE--EEEEECCCCEEEECCCCcEEeEeCCC
Confidence            45899999999999999984  5 899999999999999999998654

>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11

Probab=98.66  E-value=1.1e-07  Score=63.99  Aligned_cols=52  Identities=12%  Similarity=0.200  Sum_probs=43.8

Q ss_pred             CceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEee--eEEEEEEE
Q 037642           13 DAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSV--AVDKYYKF   66 (74)
Q Consensus        13 ~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~--~~~k~y~~   66 (74)
                      ..+|+.|||+|++++.+++  +.+.|++||.++||++..+.+....  +++-+.++
T Consensus        83 ~~ee~~~Vl~G~l~~~~~~--~~~~L~~GD~~~~~~~~~H~~~N~~~~~~~~l~v~  136 (274)
T 1sef_A           83 GIQTLVYVIDGRLRVSDGQ--ETHELEAGGYAYFTPEMKMYLANAQEADTEVFLYK  136 (274)
T ss_dssp             TEEEEEEEEESEEEEECSS--CEEEEETTEEEEECTTSCCEEEESSSSCEEEEEEE
T ss_pred             CceEEEEEEEeEEEEEECC--EEEEECCCCEEEECCCCCEEEEeCCCCCEEEEEEE
Confidence            3579999999999999988  4799999999999999999999874  45444443

>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A

Probab=98.65  E-value=8.8e-08  Score=65.38  Aligned_cols=53  Identities=13%  Similarity=0.176  Sum_probs=44.4

Q ss_pred             cCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEE
Q 037642           12 FDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYK   65 (74)
Q Consensus        12 ~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~   65 (74)
                      ...+|++|||+|++++.++++ +++.+++||.++||+|..|+|+-.++.+-+++
T Consensus        88 h~~EEfiyVleG~l~l~l~~g-~~~~L~~Gds~y~p~~~~H~~~N~~~Ar~l~V  140 (266)
T 4e2q_A           88 QDIERLIFVVEGAVTLTNTSS-SSKKLTVDSYAYLPPNFHHSLDCVESATLVVF  140 (266)
T ss_dssp             TTEEEEEEEEEECEEEEC--C-CCEEECTTEEEEECTTCCCEEEESSCEEEEEE
T ss_pred             CCCeEEEEEEEEEEEEEECCC-cEEEEcCCCEEEECCCCCEEEEeCCCEEEEEE
Confidence            456999999999999999933 47999999999999999999998877655554

>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*

Probab=98.65  E-value=9e-08  Score=66.69  Aligned_cols=62  Identities=13%  Similarity=0.236  Sum_probs=48.5

Q ss_pred             EEEecCceEEEEEEecEEEEEeCCC---ceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEEEecC
Q 037642            8 FQLKFDAEETCYLLKGKVKVYPKGS---SDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFEST   69 (74)
Q Consensus         8 ~~~~~~~~E~~~vleG~~~~~~~~g---~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~~~~   69 (74)
                      .++|...+|++|||+|++++.++++   .+.+.+++||+++||+|..|.+.....-.++.++..+
T Consensus        65 ~H~H~~~~E~~~Vl~G~~~~~v~~~~g~~~~~~L~~GD~v~ip~g~~H~~~n~~~~~~~l~v~~p  129 (350)
T 1juh_A           65 PHIHQKHYENFYCNKGSFQLWAQSGNETQQTRVLSSGDYGSVPRNVTHTFQIQDPDTEMTGVIVP  129 (350)
T ss_dssp             CEECSSCEEEEEEEESEEEEEEEETTSCCEEEEEETTCEEEECTTEEEEEEECSTTEEEEEEEES
T ss_pred             cccCCCceEEEEEEEEEEEEEECCcCCceEEEEECCCCEEEECCCCcEEEEeCCCCCEEEEEEcC
Confidence            4566668999999999999999871   1369999999999999999999986542244444433

>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*

Probab=98.65  E-value=3.1e-07  Score=65.65  Aligned_cols=63  Identities=17%  Similarity=0.218  Sum_probs=49.5

Q ss_pred             CCceE--EEecCceEEEEEEecEEEEEe---CCCceEEEECCCcEEEEcCCCeEEEEEe---eeEEEEEEEe
Q 037642            4 SPGKF--QLKFDAEETCYLLKGKVKVYP---KGSSDWVEFGAGDLVTIPKGLSCTWDVS---VAVDKYYKFE   67 (74)
Q Consensus         4 ~pg~~--~~~~~~~E~~~vleG~~~~~~---~~g~e~~~~~~GD~v~~p~g~~~~~~~~---~~~~k~y~~~   67 (74)
                      +||..  ..|.+.+|++|||+|++++.+   +++ ++..+++||+++||+|..|.+.-.   ++++.+.++.
T Consensus        57 ~PGg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~-~~~~l~~GDv~~iP~G~~H~~~N~gg~e~l~~l~~~~  127 (416)
T 1uij_A           57 KPNTILLPHHADADFLLFVLSGRAILTLVNNDDR-DSYNLHPGDAQRIPAGTTYYLVNPHDHQNLKMIWLAI  127 (416)
T ss_dssp             CTTEEEEEEEESEEEEEEEEESCEEEEEECSSCE-EEEEECTTEEEEECTTCEEEEEECCSSCCEEEEEEEE
T ss_pred             ccCcCcccccCCCceEEEEEeeEEEEEEEECCCC-eEEEecCCCEEEECCCCeEEEEecCCCCCEEEEEEec
Confidence            57664  236788999999999999987   233 689999999999999999999876   3555444554

>1vr3_A Acireductone dioxygenase; 13543033, structural genomics, JOI for structural genomics, JCSG, protein structure initiative oxidoreductase; 2.06A {Mus musculus} SCOP: b.82.1.6

Probab=98.63  E-value=1.8e-07  Score=61.20  Aligned_cols=50  Identities=22%  Similarity=0.426  Sum_probs=41.5

Q ss_pred             EEecCceEEEEEEecEEEEEeCCC-ce--EEEECCCcEEEEcCCCeEEEEEeee
Q 037642            9 QLKFDAEETCYLLKGKVKVYPKGS-SD--WVEFGAGDLVTIPKGLSCTWDVSVA   59 (74)
Q Consensus         9 ~~~~~~~E~~~vleG~~~~~~~~g-~e--~~~~~~GD~v~~p~g~~~~~~~~~~   59 (74)
                      +.| +.+|+.||++|++.+.++++ .+  .+.+++||+++||+|..|.+...+.
T Consensus       100 H~H-~~~Ei~yVleG~G~f~i~d~~d~~~~i~v~~GDlIiIPaG~~H~f~~~~~  152 (191)
T 1vr3_A          100 HLH-LDEEIRYILEGSGYFDVRDKEDKWIRISMEKGDMITLPAGIYHRFTLDEK  152 (191)
T ss_dssp             EEC-SSCEEEEEEEEEEEEEEECTTSCEEEEEEETTEEEEECTTCCEEEEECTT
T ss_pred             eEC-CcceEEEEEeceEEEEECCCCCeEEEEEECCCCEEEECcCCcCCcccCCC
Confidence            444 46899999999999999873 13  3589999999999999999987655

>2xlg_A SLL1785 protein, CUCA; metal binding protein, cupin; 1.80A {Synechocystis SP} PDB: 2xl7_A 2xl9_A 2xlf_A* 2xla_A

Probab=98.63  E-value=4.2e-08  Score=65.80  Aligned_cols=50  Identities=8%  Similarity=0.115  Sum_probs=43.7

Q ss_pred             EEEecCceEEEEEEecEEEEEe--------CCCce------------EEEECCCcEEEEcCCCeEEEEEeee
Q 037642            8 FQLKFDAEETCYLLKGKVKVYP--------KGSSD------------WVEFGAGDLVTIPKGLSCTWDVSVA   59 (74)
Q Consensus         8 ~~~~~~~~E~~~vleG~~~~~~--------~~g~e------------~~~~~~GD~v~~p~g~~~~~~~~~~   59 (74)
                      .++|...+|++|||+|++++.+        ++  +            .+.++|||+++||+|..|.|.....
T Consensus        58 ~H~H~~~~E~~yVLeG~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~GD~i~iP~g~~H~~~N~~~  127 (239)
T 2xlg_A           58 PHIHYFINEWFWTPEGGIELFHSTKQYPNMDE--LPVVGGAGRGDLYSIQSEPKQLIYSPNHYMHGFVNPTD  127 (239)
T ss_dssp             SEEESSEEEEEEETTCCCEEEEEEEECCCTTS--CCSTTTTCCEEEEEEECCTTEEEEECTTEEEEEECCSS
T ss_pred             CeECCCccEEEEEEEeEEEEEEEecccccCCC--cccccccccCceeEEEECCCCEEEECCCCCEEEEeCCC
Confidence            3667778999999999999999        55  4            7899999999999999999997654

>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20

Probab=98.63  E-value=5.3e-08  Score=63.19  Aligned_cols=64  Identities=14%  Similarity=0.079  Sum_probs=48.5

Q ss_pred             CCce-EEEec-CceEEEEEEecEEEEEeCCCc------eEEEECCCcEEEEcCCCeEEEEEeeeEEEEEEEec
Q 037642            4 SPGK-FQLKF-DAEETCYLLKGKVKVYPKGSS------DWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFES   68 (74)
Q Consensus         4 ~pg~-~~~~~-~~~E~~~vleG~~~~~~~~g~------e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~~~   68 (74)
                      .|+. +.||. +.+|++|+|+|++.|.+.+.+      ..+.+++||++++|+|..|.=.-.+.. ..|++..
T Consensus        42 GPn~r~D~H~~~~eE~Fy~lkG~m~l~v~d~g~~~~~~~dv~i~eGdmfllP~gvpHsP~r~~e~-v~lviEr  113 (176)
T 1zvf_A           42 GPNERTDYHINPTPEWFYQKKGSMLLKVVDETDAEPKFIDIIINEGDSYLLPGNVPHSPVRFADT-VGIVVEQ  113 (176)
T ss_dssp             SSBCCSCEEECSSCEEEEEEESCEEEEEEECSSSSCEEEEEEECTTEEEEECTTCCEEEEECTTC-EEEEEEE
T ss_pred             CCCcCCcCcCCCCceEEEEEeCEEEEEEEcCCCcccceeeEEECCCCEEEcCCCCCcCCcccCCc-EEEEEEe
Confidence            4656 56664 579999999999999987722      369999999999999999987444433 4555543

>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A

Probab=98.62  E-value=1.6e-07  Score=64.11  Aligned_cols=55  Identities=15%  Similarity=0.157  Sum_probs=49.1

Q ss_pred             cCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEEEec
Q 037642           12 FDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFES   68 (74)
Q Consensus        12 ~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~~~   68 (74)
                      ....|..|||+|++.+.+++  +.+.+++||.++++++..+.....++-...|++++
T Consensus       205 H~~eh~~~vL~G~g~y~l~~--~~~~V~~GD~i~~~~~~~h~~~n~G~e~~~yl~yk  259 (266)
T 4e2q_A          205 HYNQHGLLLLEGQGIYRLGD--NWYPVQAGDVIWMAPFVPQWYAALGKTRSRYLLYK  259 (266)
T ss_dssp             CSCCEEEEEEECEEEEEETT--EEEEEETTCEEEECTTCCEEEEEESSSCEEEEEEE
T ss_pred             cccceEEEEEeceEEEEECC--EEEEecCCCEEEECCCCcEEEEeCCCCCEEEEEEc
Confidence            45679999999999999999  58999999999999999999999877677787765

>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*

Probab=98.59  E-value=3.7e-07  Score=60.37  Aligned_cols=54  Identities=7%  Similarity=-0.006  Sum_probs=45.0

Q ss_pred             CCceE-EEe-cCceEEEEEEecEEEEEeCCCceEEEECCCcEEE-EcCCCeEEEEEeee
Q 037642            4 SPGKF-QLK-FDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVT-IPKGLSCTWDVSVA   59 (74)
Q Consensus         4 ~pg~~-~~~-~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~-~p~g~~~~~~~~~~   59 (74)
                      .||.. ..| .+..|+.|||+|++++.+++  +...+.|||.++ ||+|..|.+...+.
T Consensus        42 ~pg~~~~~H~H~~~e~~~Vl~G~~~~~~~~--~~~~l~~Gd~i~~ip~~~~H~~~n~~~   98 (243)
T 3h7j_A           42 PPHTNVEPHQHKEVQIGMVVSGELMMTVGD--VTRKMTALESAYIAPPHVPHGARNDTD   98 (243)
T ss_dssp             CTTEEEEEECCSSEEEEEEEESEEEEEETT--EEEEEETTTCEEEECTTCCEEEEECSS
T ss_pred             CCCCccCCEECCCcEEEEEEEeEEEEEECC--EEEEECCCCEEEEcCCCCcEeeEeCCC
Confidence            46653 333 35799999999999999987  479999999995 99999999998765

>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A

Probab=98.57  E-value=8.6e-07  Score=61.62  Aligned_cols=54  Identities=24%  Similarity=0.377  Sum_probs=43.3

Q ss_pred             CCceE---EEecCceEEEEEEecEEEEEeC--CCce--EEEECCCcEEEEcCCCeEEEEEeee
Q 037642            4 SPGKF---QLKFDAEETCYLLKGKVKVYPK--GSSD--WVEFGAGDLVTIPKGLSCTWDVSVA   59 (74)
Q Consensus         4 ~pg~~---~~~~~~~E~~~vleG~~~~~~~--~g~e--~~~~~~GD~v~~p~g~~~~~~~~~~   59 (74)
                      .||..   ++|. ..|++|||+|++++.+.  +| +  .+.+++||+++||+|..|.+...+.
T Consensus        87 ~pg~~~~~H~H~-~~E~~~Vl~G~~~~~~~~~~g-~~~~~~l~~GD~~~ip~g~~H~~~n~~~  147 (385)
T 1j58_A           87 KPGAIRELHWHK-EAEWAYMIYGSARVTIVDEKG-RSFIDDVGEGDLWYFPSGLPHSIQALEE  147 (385)
T ss_dssp             CTTCEEEEEEES-SCEEEEEEEEEEEEEEECTTS-CEEEEEEETTEEEEECTTCCEEEEEEEE
T ss_pred             CCCCCCCCccCC-hheEEEEEeeeEEEEEEeCCC-cEEEEEeCCCCEEEECCCCeEEEEECCC
Confidence            45543   4555 88999999999999983  22 4  4599999999999999999987654

>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A

Probab=98.57  E-value=7.2e-07  Score=65.84  Aligned_cols=65  Identities=15%  Similarity=0.298  Sum_probs=47.5

Q ss_pred             CCceE---EEecCceEEEEEEecEEEEEeCC--Cce--EEEECCCcEEEEcCCCeEEEEEeeeEEEEEEEec
Q 037642            4 SPGKF---QLKFDAEETCYLLKGKVKVYPKG--SSD--WVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFES   68 (74)
Q Consensus         4 ~pg~~---~~~~~~~E~~~vleG~~~~~~~~--g~e--~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~~~   68 (74)
                      +||..   +||..+.|+.|||+|++.+.+-+  |+.  ...|++||+++||+|..|.-...+.-..+..|..
T Consensus       402 ~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~G~~v~~~~L~~GDV~v~P~G~~H~~~ag~e~l~flaF~s  473 (531)
T 3fz3_A          402 YRNGIYSPHWNVNAHSVVYVIRGNARVQVVNENGDAILDQEVQQGQLFIVPQNHGVIQQAGNQGFEYFAFKT  473 (531)
T ss_dssp             CTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEES
T ss_pred             ecCccccceEcCCCCEEEEEEeCcEEEEEEeCCCcEEEEEEecCCeEEEECCCCeEEEecCCCCEEEEEEec
Confidence            45654   67888999999999999988744  222  3679999999999999996554434334434544

>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}

Probab=98.55  E-value=7.2e-07  Score=65.52  Aligned_cols=66  Identities=14%  Similarity=0.289  Sum_probs=48.4

Q ss_pred             CCceE---EEecCceEEEEEEecEEEEEeCC--CceEEE--ECCCcEEEEcCCCeEEEEEeeeEEEEEEEecC
Q 037642            4 SPGKF---QLKFDAEETCYLLKGKVKVYPKG--SSDWVE--FGAGDLVTIPKGLSCTWDVSVAVDKYYKFEST   69 (74)
Q Consensus         4 ~pg~~---~~~~~~~E~~~vleG~~~~~~~~--g~e~~~--~~~GD~v~~p~g~~~~~~~~~~~~k~y~~~~~   69 (74)
                      .||..   ++|....|++|||+|++++.+.+  |+..+.  |++||+++||+|..|.....+.-..+..+..+
T Consensus       380 ~PG~~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~G~~~~~~~l~~GDv~viP~G~~H~~~Ng~e~l~~l~f~~s  452 (510)
T 3c3v_A          380 YRNALFVPHYNTNAHSIIYALRGRAHVQVVDSNGNRVYDEELQEGHVLVVPQNFAVAGKSQSDNFEYVAFKTD  452 (510)
T ss_dssp             ETTCEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEEEECTTCEEEEEECSSEEEEEEEESS
T ss_pred             cCCceecceECCCCCEEEEEEeCEEEEEEEeCCCCEEEeEEEcCCcEEEECCCCeEEEEeCCCCEEEEEEECC
Confidence            35553   67777899999999999998754  223444  99999999999999998875443344445433

>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}

Probab=98.55  E-value=4.7e-07  Score=62.29  Aligned_cols=50  Identities=24%  Similarity=0.378  Sum_probs=41.4

Q ss_pred             EEecCceEEEEEEecEEEEEe---CCCceEEEECCCcEEEEcCCCeEEEEEee
Q 037642            9 QLKFDAEETCYLLKGKVKVYP---KGSSDWVEFGAGDLVTIPKGLSCTWDVSV   58 (74)
Q Consensus         9 ~~~~~~~E~~~vleG~~~~~~---~~g~e~~~~~~GD~v~~p~g~~~~~~~~~   58 (74)
                      ++|....|++|||+|++++.+   ++....+.+++||+++||+|..|.+...+
T Consensus       250 H~H~~~~E~~~Vl~G~~~~~v~~~~g~~~~~~l~~GD~~~ip~~~~H~~~n~~  302 (361)
T 2vqa_A          250 HWHPNADEWQYVLDGEMDLTVFASEGKASVSRLQQGDVGYVPKGYGHAIRNSS  302 (361)
T ss_dssp             EECSSCCEEEEEEESCEEEEEECSTTCEEEEEECTTCEEEECTTCEEEEECCS
T ss_pred             ccCCCCCEEEEEEeCEEEEEEEcCCCcEEEEEECCCCEEEECCCCeEEeEECC
Confidence            555556999999999999998   44112799999999999999999998754

>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A

Probab=98.55  E-value=6.6e-07  Score=65.11  Aligned_cols=64  Identities=13%  Similarity=0.284  Sum_probs=47.4

Q ss_pred             CCceE---EEecCceEEEEEEecEEEEEeCC--CceEEE--ECCCcEEEEcCCCeEEEEEeeeEEEEEEEe
Q 037642            4 SPGKF---QLKFDAEETCYLLKGKVKVYPKG--SSDWVE--FGAGDLVTIPKGLSCTWDVSVAVDKYYKFE   67 (74)
Q Consensus         4 ~pg~~---~~~~~~~E~~~vleG~~~~~~~~--g~e~~~--~~~GD~v~~p~g~~~~~~~~~~~~k~y~~~   67 (74)
                      +||..   ++|....|+.|||+|++++.+.+  |...+.  +++||+++||+|..|.....+.-..+..+.
T Consensus       346 ~pGa~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~G~~~~~~~l~~GDv~viP~G~~H~~~ng~~~l~~l~f~  416 (476)
T 1fxz_A          346 RKNAMFVPHYNLNANSIIYALNGRALIQVVNCNGERVFDGELQEGRVLIVPQNFVVAARSQSDNFEYVSFK  416 (476)
T ss_dssp             CTTCEEEEEEETTCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEEEECTTCEEEEEECSTTEEEEEEE
T ss_pred             cCCceecceECCCCCEEEEEEeCEEEEEEEecCCCEEeeeEEcCCCEEEECCCCeEEEEeCCCCEEEEEEE
Confidence            45553   67777899999999999998754  223444  999999999999999988744333333344

>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A

Probab=98.50  E-value=5.6e-07  Score=62.57  Aligned_cols=50  Identities=16%  Similarity=0.202  Sum_probs=41.5

Q ss_pred             EEecCceEEEEEEecEEEEEeC--CC-ceEEEECCCcEEEEcCCCeEEEEEee
Q 037642            9 QLKFDAEETCYLLKGKVKVYPK--GS-SDWVEFGAGDLVTIPKGLSCTWDVSV   58 (74)
Q Consensus         9 ~~~~~~~E~~~vleG~~~~~~~--~g-~e~~~~~~GD~v~~p~g~~~~~~~~~   58 (74)
                      ++|...+|++|||+|+++++++  +| .+.+.+++||+++||+|..|.+...+
T Consensus       273 h~H~~~~E~~~Vl~G~~~~~i~~~~g~~~~~~l~~GD~~~ip~~~~H~~~n~~  325 (385)
T 1j58_A          273 HWHPNTHEWQYYISGKARMTVFASDGHARTFNYQAGDVGYVPFAMGHYVENIG  325 (385)
T ss_dssp             EECSSSCEEEEEEESEEEEEEEEETTEEEEEEEESSCEEEECTTCBEEEEECS
T ss_pred             eeCCCCCEEEEEEeCeEEEEEEcCCCcEEEEEEcCCCEEEECCCCeEEEEECC
Confidence            4555558999999999999986  22 15799999999999999999998754

>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A

Probab=98.48  E-value=1.9e-06  Score=62.48  Aligned_cols=54  Identities=13%  Similarity=0.275  Sum_probs=43.9

Q ss_pred             CCceE---EEecCceEEEEEEecEEEEEeCC--CceEEE--ECCCcEEEEcCCCeEEEEEe
Q 037642            4 SPGKF---QLKFDAEETCYLLKGKVKVYPKG--SSDWVE--FGAGDLVTIPKGLSCTWDVS   57 (74)
Q Consensus         4 ~pg~~---~~~~~~~E~~~vleG~~~~~~~~--g~e~~~--~~~GD~v~~p~g~~~~~~~~   57 (74)
                      .||..   +||....|+.||++|++.+.+.+  |...+.  |++||+++||+|..|.-.-.
T Consensus       330 ~pG~~~~pH~Hp~A~Ei~yV~~G~~~v~vv~~~g~~~~~~~l~~GDv~v~P~G~~H~~~ng  390 (459)
T 2e9q_A          330 YSNAMVAPHYTVNSHSVMYATRGNARVQVVDNFGQSVFDGEVREGQVLMIPQNFVVIKRAS  390 (459)
T ss_dssp             CTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEEEECTTCEEEEEEE
T ss_pred             eCCcCccceECCCCCEEEEEEeeEEEEEEEeCCCCEEEeeEEeCCcEEEECCCCEEEEEeC
Confidence            45654   67888999999999999999865  334554  99999999999999987664

>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11

Probab=98.47  E-value=3.3e-07  Score=62.12  Aligned_cols=52  Identities=25%  Similarity=0.241  Sum_probs=43.6

Q ss_pred             cCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEE
Q 037642           12 FDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYK   65 (74)
Q Consensus        12 ~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~   65 (74)
                      ....|.+|||+|++.+.+++  +.+.++|||++++++|..+.+...+.-...|+
T Consensus       210 h~~e~~~~il~G~~~~~~~~--~~~~v~~GD~~~~~~~~~h~~~n~g~~~~~yl  261 (278)
T 1sq4_A          210 HVMEHGLYVLEGKAVYRLNQ--DWVEVEAGDFMWLRAFCPQACYSGGPGRFRYL  261 (278)
T ss_dssp             CSEEEEEEEEECEEEEEETT--EEEEEETTCEEEEEESCCEEEECCSSSCEEEE
T ss_pred             CCccEEEEEEeCEEEEEECC--EEEEeCCCCEEEECCCCCEEEEcCCCCCEEEE
Confidence            34679999999999999998  57999999999999999999998654333443

>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23

Probab=98.45  E-value=1.1e-06  Score=61.43  Aligned_cols=49  Identities=14%  Similarity=0.225  Sum_probs=41.9

Q ss_pred             EEecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeE
Q 037642            9 QLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAV   60 (74)
Q Consensus         9 ~~~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~   60 (74)
                      ++|... |++||++|++++++++  +++.+++||++++|++..+.....+++
T Consensus       284 H~h~~~-ev~~v~~G~g~~~v~~--~~~~~~~GD~~~vP~~~~H~~~n~e~~  332 (354)
T 2d40_A          284 ARTTDS-TIYHVVEGSGQVIIGN--ETFSFSAKDIFVVPTWHGVSFQTTQDS  332 (354)
T ss_dssp             BEESSC-EEEEEEEEEEEEEETT--EEEEEETTCEEEECTTCCEEEEEEEEE
T ss_pred             eecCCc-EEEEEEeCeEEEEECC--EEEEEcCCCEEEECCCCeEEEEeCCCE
Confidence            344444 9999999999999976  689999999999999999999876664

>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23

Probab=98.44  E-value=5.1e-07  Score=63.12  Aligned_cols=52  Identities=15%  Similarity=0.272  Sum_probs=43.1

Q ss_pred             CCceE---EEecCceEEEEEEecEEEE-EeCCCceEEEECCCcEEEEcCCCeEEEEEee
Q 037642            4 SPGKF---QLKFDAEETCYLLKGKVKV-YPKGSSDWVEFGAGDLVTIPKGLSCTWDVSV   58 (74)
Q Consensus         4 ~pg~~---~~~~~~~E~~~vleG~~~~-~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~   58 (74)
                      .||..   +.| +..|++|||+|++.+ .+++  +.+.+++||+++||+|..|.+...+
T Consensus       108 ~PG~~~~~H~H-~~~e~~yVl~G~g~~t~v~g--~~~~l~~GD~~~iP~g~~H~~~n~~  163 (354)
T 2d40_A          108 MPGEVAPSHRH-NQSALRFIVEGKGAFTAVDG--ERTPMNEGDFILTPQWRWHDHGNPG  163 (354)
T ss_dssp             CTTCEEEEEEE-SSCEEEEEEECSSCEEEETT--EEEECCTTCEEEECTTSCEEEECCS
T ss_pred             CCCCCcCCeec-CcceEEEEEEEEEEEEEECC--EEEEEcCCCEEEECCCCcEEeEeCC
Confidence            45553   344 567999999999998 6776  5799999999999999999998764

>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A*

Probab=98.42  E-value=2.5e-06  Score=60.92  Aligned_cols=57  Identities=18%  Similarity=0.193  Sum_probs=46.9

Q ss_pred             CCceE---EEecCceEEEEEEecEEEEEeCCC--------c--eEEEECCCcEEEEcCCCeEEEEEeeeE
Q 037642            4 SPGKF---QLKFDAEETCYLLKGKVKVYPKGS--------S--DWVEFGAGDLVTIPKGLSCTWDVSVAV   60 (74)
Q Consensus         4 ~pg~~---~~~~~~~E~~~vleG~~~~~~~~g--------~--e~~~~~~GD~v~~p~g~~~~~~~~~~~   60 (74)
                      +||..   +||....|+.||++|++.+.+-+.        .  -...+++||+++||+|..+...-.+.+
T Consensus       247 ~pG~~~~PH~h~~A~Ei~yVl~G~g~v~vv~~~~~~~~~g~~~~~~~l~~GDV~vvP~G~~h~~~n~~~l  316 (397)
T 2phl_A          247 EEGALFVPHYYSKAIVILVVNEGEAHVELVGPKGNKETLEYESYRAELSKDDVFVIPAAYPVAIKATSNV  316 (397)
T ss_dssp             CTTEEEEEEEESSCEEEEEEEESEEEEEEEEECC--CCSCEEEEEEEEETTCEEEECTTCCEEEEESSSE
T ss_pred             cCCcEeeeeEcCCCCEEEEEEeeeEEEEEEeccccccCCCceEEEEEecCCCEEEECCCCeEEEEeCCCe
Confidence            46665   678889999999999999998642        1  146799999999999999999888764

>1zrr_A E-2/E-2' protein; nickel, cupin, beta helix, methionine salvage, oxidoreductase; NMR {Klebsiella oxytoca} SCOP: b.82.1.6 PDB: 2hji_A

Probab=98.39  E-value=1.9e-07  Score=60.46  Aligned_cols=49  Identities=16%  Similarity=0.311  Sum_probs=39.5

Q ss_pred             EEecCceEEEEEEecEEEEEeC-CCceE--EEECCCcEEEEcCCCeEEEEEeee
Q 037642            9 QLKFDAEETCYLLKGKVKVYPK-GSSDW--VEFGAGDLVTIPKGLSCTWDVSVA   59 (74)
Q Consensus         9 ~~~~~~~E~~~vleG~~~~~~~-~g~e~--~~~~~GD~v~~p~g~~~~~~~~~~   59 (74)
                      +.| +.+|+.||++|++.+.+. ++ +.  +.+++||+++||+|..|.+...+.
T Consensus        96 H~H-~~~Ei~~Vl~G~g~~~i~~~d-~~~~~~l~~GDli~IP~g~~H~~~~~~~  147 (179)
T 1zrr_A           96 HTH-GEDEVRFFVEGAGLFCLHIGD-EVFQVLCEKNDLISVPAHTPHWFDMGSE  147 (179)
T ss_dssp             BEE-SSCEEEEEEESCCCCCEECSS-CEEEEECCCSCEEEECTTCCBCCCCSSC
T ss_pred             eEC-ChheEEEEEcceEEEEEEeCC-EEEEEEECCCCEEEECCCCeEeeecCCC
Confidence            444 458999999999999873 33 34  559999999999999999887554

>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}

Probab=98.38  E-value=1.1e-07  Score=55.55  Aligned_cols=57  Identities=9%  Similarity=0.103  Sum_probs=44.6

Q ss_pred             cCCce---EEEecCceEEEEEEecEEEEEeCCCce-EEEECCCcEEEEcCCCeEEEEEeee
Q 037642            3 CSPGK---FQLKFDAEETCYLLKGKVKVYPKGSSD-WVEFGAGDLVTIPKGLSCTWDVSVA   59 (74)
Q Consensus         3 ~~pg~---~~~~~~~~E~~~vleG~~~~~~~~g~e-~~~~~~GD~v~~p~g~~~~~~~~~~   59 (74)
                      -+||.   ++.|....|+++|++|.++++.+++.. ...+++||.+++|+|..|...-.+.
T Consensus        24 i~PG~~~~~H~H~~~~e~~~v~~G~~~v~~~d~~~~~~~l~~G~~~~ip~G~~H~~~N~g~   84 (98)
T 3lag_A           24 LPPGSATGHHTHGMDYVVVPMADGEMTIVAPDGTRSLAQLKTGRSYARKAGVQHDVRNEST   84 (98)
T ss_dssp             ECTTEECCSEECCSCEEEEESSCBC-CEECTTSCEECCCBCTTCCEEECTTCEEEEBCCSS
T ss_pred             ECCCCccCcEECCCcEEEEEEeccEEEEEeCCCceEEEEecCCcEEEEcCCCcEECEECCC
Confidence            35776   456666789999999999999988632 3568999999999999999876554

>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum}

Probab=98.36  E-value=4.4e-06  Score=61.23  Aligned_cols=55  Identities=18%  Similarity=0.330  Sum_probs=42.8

Q ss_pred             CCceE---EEecCceEEEEEEecEEEEEeCC--CceEE--EECCCcEEEEcCCCeEEEEEee
Q 037642            4 SPGKF---QLKFDAEETCYLLKGKVKVYPKG--SSDWV--EFGAGDLVTIPKGLSCTWDVSV   58 (74)
Q Consensus         4 ~pg~~---~~~~~~~E~~~vleG~~~~~~~~--g~e~~--~~~~GD~v~~p~g~~~~~~~~~   58 (74)
                      .||..   +||..+.|+.||++|++.+.+-+  |+..+  .|++||+++||+|..|.-....
T Consensus       366 ~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~g~~~f~~~l~~GDV~v~P~G~~H~~~a~~  427 (496)
T 3ksc_A          366 HKNAMFVPHYNLNANSIIYALKGRARLQVVNCNGNTVFDGELEAGRALTVPQNYAVAAKSLS  427 (496)
T ss_dssp             ETTCEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEEEECTTCEEEEEECS
T ss_pred             eCCeEECCeeCCCCCEEEEEEeceEEEEEEeCCCcEEEEEEecCCeEEEECCCCEEEEEeCC
Confidence            35554   68888999999999999998744  33344  4999999999999999654443

>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein, storage protein, plant protein; 2.98A {Brassica napus}

Probab=98.35  E-value=6e-06  Score=60.12  Aligned_cols=55  Identities=20%  Similarity=0.348  Sum_probs=43.2

Q ss_pred             CCceE---EEecCceEEEEEEecEEEEEeCC--CceEE--EECCCcEEEEcCCCeEEEEEee
Q 037642            4 SPGKF---QLKFDAEETCYLLKGKVKVYPKG--SSDWV--EFGAGDLVTIPKGLSCTWDVSV   58 (74)
Q Consensus         4 ~pg~~---~~~~~~~E~~~vleG~~~~~~~~--g~e~~--~~~~GD~v~~p~g~~~~~~~~~   58 (74)
                      +||..   +||..+.|+.||++|++.+.+-+  |+..+  .|++||+++||+|..|.-....
T Consensus       331 ~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~g~~~f~~~l~~GDV~v~P~G~~H~~~ag~  392 (466)
T 3kgl_A          331 RQNAMVLPQWNANANAVLYVTDGEAHVQVVNDNGDRVFDGQVSQGQLLSIPQGFSVVKRATS  392 (466)
T ss_dssp             ETTEEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEEEECTTCEEEEEECS
T ss_pred             ecCcEeeeeECCCCCEEEEEEeceEEEEEEeCCCcEEEEeEecCCcEEEECCCCeEEEEcCC
Confidence            45664   68888999999999999998744  32333  4999999999999999775543

>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23

Probab=98.35  E-value=3.1e-06  Score=60.45  Aligned_cols=43  Identities=12%  Similarity=0.088  Sum_probs=38.8

Q ss_pred             ceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEee
Q 037642           14 AEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSV   58 (74)
Q Consensus        14 ~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~   58 (74)
                      ..+++|||+|++.+.+++  +.+.+++||+|++|+|..|...-.+
T Consensus       314 ~~~v~~VleG~G~~~V~g--e~~~~~~GD~~~iP~g~~H~~~N~g  356 (394)
T 3bu7_A          314 GNVIYNVAKGQGYSIVGG--KRFDWSEHDIFCVPAWTWHEHCNTQ  356 (394)
T ss_dssp             SCEEEEEEECCEEEEETT--EEEEECTTCEEEECTTCCEEEEECC
T ss_pred             CcEEEEEEeCeEEEEECC--EEEEEeCCCEEEECCCCeEEeEeCC
Confidence            568999999999999987  5799999999999999999998653

>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A

Probab=98.35  E-value=5.5e-06  Score=60.05  Aligned_cols=66  Identities=17%  Similarity=0.164  Sum_probs=49.9

Q ss_pred             CCceE---EEecCceEEEEEEecEEEEEeC--CCc----------------------eEEEECCCcEEEEcCCCeEEEEE
Q 037642            4 SPGKF---QLKFDAEETCYLLKGKVKVYPK--GSS----------------------DWVEFGAGDLVTIPKGLSCTWDV   56 (74)
Q Consensus         4 ~pg~~---~~~~~~~E~~~vleG~~~~~~~--~g~----------------------e~~~~~~GD~v~~p~g~~~~~~~   56 (74)
                      +||..   ++ .+.+|++||++|++.+.+.  ++.                      +...|++||+++||+|..|.+.-
T Consensus        71 ~pggl~~Ph~-h~a~ei~yVl~G~g~vg~v~p~~~~tf~~~~~~~~~~~~~~~d~~q~~~~l~~GDv~~iPaG~~H~~~N  149 (459)
T 2e9q_A           71 RPKGLLLPGF-SNAPKLIFVAQGFGIRGIAIPGCAETYQTDLRRSQSAGSAFKDQHQKIRPFREGDLLVVPAGVSHWMYN  149 (459)
T ss_dssp             CTTEEEEEEE-ESSCEEEEEEECEEEEEECCTTCCCCEEECCC-------CCCEEECCCEEEETTEEEEECTTCCEEEEE
T ss_pred             cCCCEeccee-cCCceEEEEEeeEEEEEEEeCCCcchhccchhhccccccccccccceeEEecCCCEEEECCCCCEEEEe
Confidence            56765   34 3689999999999999875  211                      14589999999999999999987


Q ss_pred             ee--eEEEEEEEecCC
Q 037642           57 SV--AVDKYYKFESTS   70 (74)
Q Consensus        57 ~~--~~~k~y~~~~~~   70 (74)
                      .+  +++.+.+++..+
T Consensus       150 ~g~~~l~~l~~~d~~n  165 (459)
T 2e9q_A          150 RGQSDLVLIVFADTRN  165 (459)
T ss_dssp             CSSSCEEEEEEEESSS
T ss_pred             CCCCCEEEEEEecCCC
Confidence            65  565555666543

>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*

Probab=98.35  E-value=3.9e-06  Score=59.97  Aligned_cols=59  Identities=14%  Similarity=0.217  Sum_probs=47.2

Q ss_pred             CCceE---EEecCceEEEEEEecEEEEEeCCCc---------------eEE--EECCCcEEEEcCCCeEEEEEeeeEEE
Q 037642            4 SPGKF---QLKFDAEETCYLLKGKVKVYPKGSS---------------DWV--EFGAGDLVTIPKGLSCTWDVSVAVDK   62 (74)
Q Consensus         4 ~pg~~---~~~~~~~E~~~vleG~~~~~~~~g~---------------e~~--~~~~GD~v~~p~g~~~~~~~~~~~~k   62 (74)
                      .||..   +||....|+.||++|++.+.+-+..               ..+  .+++||+++||+|..+...-.+++.-
T Consensus       257 ~~g~~~~pH~h~~A~Ei~~V~~G~~~v~~v~~~g~~~~~~~~~~~~~~~~~~~~l~~Gdv~vvP~g~~h~~~n~~~~~~  335 (416)
T 1uij_A          257 NEGALLLPHFNSKAIVILVINEGDANIELVGIKEQQQKQKQEEEPLEVQRYRAELSEDDVFVIPAAYPFVVNATSNLNF  335 (416)
T ss_dssp             CTTEEEEEEEESSCEEEEEEEESEEEEEEEEEC------------CCEEEEEEEEETTCEEEECTTCCEEEEESSSEEE
T ss_pred             cCCcEecceEcCCCcEEEEEEeeEEEEEEEcCCCccccccccccccceEEEEEEecCCcEEEECCCCeEEEEcCCCeEE
Confidence            46664   6788899999999999999864321               145  89999999999999999988876543

>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A

Probab=98.32  E-value=6.3e-06  Score=59.95  Aligned_cols=67  Identities=16%  Similarity=0.192  Sum_probs=50.5

Q ss_pred             CCceEE--EecCceEEEEEEecEEEEEeCC--Cc-----------------------eEEEECCCcEEEEcCCCeEEEEE
Q 037642            4 SPGKFQ--LKFDAEETCYLLKGKVKVYPKG--SS-----------------------DWVEFGAGDLVTIPKGLSCTWDV   56 (74)
Q Consensus         4 ~pg~~~--~~~~~~E~~~vleG~~~~~~~~--g~-----------------------e~~~~~~GD~v~~p~g~~~~~~~   56 (74)
                      +||...  .+.+.+|++||++|++.+.+..  +.                       +...|++||+++||+|..|.+.-
T Consensus        56 ~Pggl~~Ph~~~a~ei~yV~~G~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~d~~qk~~~l~~GDvi~iPaG~~h~~~N  135 (476)
T 1fxz_A           56 NRNALRRPSYTNGPQEIYIQQGKGIFGMIYPGCPSTFEEPQQPQQRGQSSRPQDRHQKIYNFREGDLIAVPTGVAWWMYN  135 (476)
T ss_dssp             CTTEEEEEEEESSCEEEEEEECCEEEEEECTTCCCC------------------CCCCEEEECTTEEEEECTTCEEEEEE
T ss_pred             cCCCEecceecCCceEEEEEecEEEEEEEcCCCcchhhccccccccccccccccccceEEEEeCCCEEEECCCCcEEEEe
Confidence            566652  3356899999999999888753  10                       25789999999999999999987


Q ss_pred             ee--eEEEEEEEecCC
Q 037642           57 SV--AVDKYYKFESTS   70 (74)
Q Consensus        57 ~~--~~~k~y~~~~~~   70 (74)
                      .+  +++.+.+++...
T Consensus       136 ~G~~~l~~i~~~d~~n  151 (476)
T 1fxz_A          136 NEDTPVVAVSIIDTNS  151 (476)
T ss_dssp             CSSSCEEEEEEECTTC
T ss_pred             CCCCCEEEEEEecCCC
Confidence            76  566666666444

>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus}

Probab=98.31  E-value=1.1e-05  Score=58.65  Aligned_cols=54  Identities=13%  Similarity=0.319  Sum_probs=42.1

Q ss_pred             CCceE---EEecCceEEEEEEecEEEEEeCC--CceEEE--ECCCcEEEEcCCCeEEEEEe
Q 037642            4 SPGKF---QLKFDAEETCYLLKGKVKVYPKG--SSDWVE--FGAGDLVTIPKGLSCTWDVS   57 (74)
Q Consensus         4 ~pg~~---~~~~~~~E~~~vleG~~~~~~~~--g~e~~~--~~~GD~v~~p~g~~~~~~~~   57 (74)
                      .||..   +||..+.|+.||++|++.+.+-+  |+..+.  |++||+++||+|..+.-...
T Consensus       331 ~pGgm~~PHwHp~A~Ei~yV~~G~~~v~vV~~~g~~~f~~~l~~GDVfvvP~g~~h~~~ag  391 (465)
T 3qac_A          331 YRNAMMAPHYNLNAHNIMYCVRGRGRIQIVNDQGQSVFDEELSRGQLVVVPQNFAIVKQAF  391 (465)
T ss_dssp             CTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEEEECTTCEEEEEEE
T ss_pred             cCCcEeeeEECCCCCEEEEEEeCCEEEEEEeCCCcEEEEEEecCCeEEEECCCcEEEEEcC
Confidence            45554   68888999999999999988744  223444  99999999999999865543

>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A

Probab=98.28  E-value=7.3e-06  Score=58.93  Aligned_cols=60  Identities=17%  Similarity=0.274  Sum_probs=47.3

Q ss_pred             CCceE---EEecCceEEEEEEecEEEEEeCCCc------------e--EE--EECCCcEEEEcCCCeEEEEEeeeEEEE
Q 037642            4 SPGKF---QLKFDAEETCYLLKGKVKVYPKGSS------------D--WV--EFGAGDLVTIPKGLSCTWDVSVAVDKY   63 (74)
Q Consensus         4 ~pg~~---~~~~~~~E~~~vleG~~~~~~~~g~------------e--~~--~~~~GD~v~~p~g~~~~~~~~~~~~k~   63 (74)
                      .||..   +||....|+.||++|++.+.+.+..            .  .+  .+++||+++||+|..+.-.-.+++.-+
T Consensus       274 ~pG~m~~pH~hp~A~Ei~~V~~G~~~v~vv~~~g~~~~~~~~~~~~~r~~~~~l~~Gdv~vvP~g~~h~~~n~~~~~~v  352 (434)
T 2ea7_A          274 KEGALLLPHYSSKAIVIMVINEGEAKIELVGLSDQQQQKQQEESLEVQRYRAELSEDDVFVIPAAYPVAINATSNLNFF  352 (434)
T ss_dssp             CTTEEEEEEEESSCEEEEEEEESCEEEEEEEEEECCCCTTSCCCEEEEEEEEEECTTCEEEECTTCCEEEEESSSEEEE
T ss_pred             cCCeeeccEEcCCCCEEEEEEeeEEEEEEEecCccccccccccCcceEEEEEEecCCcEEEECCCCeEEEEcCCCeEEE
Confidence            46664   6788899999999999999875431            1  45  799999999999999998877765333

>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21

Probab=98.27  E-value=2.9e-06  Score=52.56  Aligned_cols=54  Identities=19%  Similarity=0.080  Sum_probs=41.1

Q ss_pred             ceEEEEEEecEEEEEeCCCceE--EEECCCcEEEEcCCCeEE-EEEeeeEEEEEEEecC
Q 037642           14 AEETCYLLKGKVKVYPKGSSDW--VEFGAGDLVTIPKGLSCT-WDVSVAVDKYYKFEST   69 (74)
Q Consensus        14 ~~E~~~vleG~~~~~~~~g~e~--~~~~~GD~v~~p~g~~~~-~~~~~~~~k~y~~~~~   69 (74)
                      ..|..|||+|++....++  ..  ..+++||.+++|+|..|. ....+....+.++..+
T Consensus        64 ~~ee~~VL~G~~~~~~g~--~~~~~~~~~Gd~~~~p~g~~H~p~~~~e~~~~l~~~~gp  120 (145)
T 2o1q_A           64 GPGEYFLTKGKMDVRGGK--AAGGDTAIAPGYGYESANARHDKTEFPVASEFYMSFLGP  120 (145)
T ss_dssp             SCEEEEEEEEEEEETTCG--GGTSEEEESSEEEEECTTCEESCCEEEEEEEEEEEEESC
T ss_pred             CCEEEEEEEeEEEEcCCC--EecceEeCCCEEEEECcCCccCCeECCCCeEEEEEECCc
Confidence            566699999999865433  34  799999999999999999 6667776555555443

>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23

Probab=98.25  E-value=3.8e-06  Score=59.97  Aligned_cols=55  Identities=18%  Similarity=0.268  Sum_probs=42.0

Q ss_pred             EEecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEE-eeeEEEEEE
Q 037642            9 QLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDV-SVAVDKYYK   65 (74)
Q Consensus         9 ~~~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~-~~~~~k~y~   65 (74)
                      +.|. ..|++|||+|++.++..+| +.+.+++||++++|+|..|.... .+.-...|+
T Consensus       139 HrH~-~~ev~~IleG~G~~t~v~G-~~~~~~~GD~i~~P~g~~H~~~N~~gde~l~~l  194 (394)
T 3bu7_A          139 HRHA-ASALRFIMEGSGAYTIVDG-HKVELGANDFVLTPNGTWHEHGILESGTECIWQ  194 (394)
T ss_dssp             EEES-SCEEEEEEECSCEEEEETT-EEEEECTTCEEEECTTCCEEEEECTTCCCEEEE
T ss_pred             ccCC-cceEEEEEEeeEEEEEECC-EEEEEcCCCEEEECcCCCEEEEcCCCCCCEEEE
Confidence            3444 4599999999997744444 58999999999999999999988 554333444

>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A*

Probab=98.24  E-value=9.9e-06  Score=57.81  Aligned_cols=65  Identities=15%  Similarity=0.011  Sum_probs=49.0

Q ss_pred             CCceE--EEecCceEEEEEEecEEEEEe--CCCceEEEECCCcE------EEEcCCCeEEEEEee---eEEEEEEEec
Q 037642            4 SPGKF--QLKFDAEETCYLLKGKVKVYP--KGSSDWVEFGAGDL------VTIPKGLSCTWDVSV---AVDKYYKFES   68 (74)
Q Consensus         4 ~pg~~--~~~~~~~E~~~vleG~~~~~~--~~g~e~~~~~~GD~------v~~p~g~~~~~~~~~---~~~k~y~~~~   68 (74)
                      .||..  +.+.+.+|+.||++|++.+.+  .++.++..+++||+      ++||+|..|.+.-.+   +++-+-++..
T Consensus        60 ~pgg~~~ph~~~a~ei~yVl~G~~~v~~v~~~~~~~~~l~~GDv~~~~~~~~iP~G~~h~~~N~g~~~~l~~i~~~~~  137 (397)
T 2phl_A           60 KPETLLLPQQADAELLLVVRSGSAILVLVKPDDRREYFFLTSDNPIFSDHQKIPAGTIFYLVNPDPKEDLRIIQLAMP  137 (397)
T ss_dssp             CSSEEEEEEEESEEEEEEEEESEEEEEEEETTTEEEEEEEESSCTTSCSEEEECTTCEEEEEECCSSCCEEEEEEEEE
T ss_pred             CCCcCccCEecCCCeEEEEEeeeEEEEEEeCCCcEEEEECCCCcccccceEEECCCCcEEEEeCCCCCCeEEEEeecC
Confidence            56665  333588999999999999987  23336789999999      999999999997644   4544444443

>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A

Probab=98.24  E-value=2.1e-06  Score=59.17  Aligned_cols=52  Identities=15%  Similarity=0.174  Sum_probs=41.8

Q ss_pred             EEEe-cCceEEEEEEecEEEEEeCC-C-ceEEEECCCcEEEEcCCCeEEEEEeee
Q 037642            8 FQLK-FDAEETCYLLKGKVKVYPKG-S-SDWVEFGAGDLVTIPKGLSCTWDVSVA   59 (74)
Q Consensus         8 ~~~~-~~~~E~~~vleG~~~~~~~~-g-~e~~~~~~GD~v~~p~g~~~~~~~~~~   59 (74)
                      +.|| -+.+|++|+|+|.+.+.+.+ | -..+.+++||++++|+|..|.=.-.+.
T Consensus        44 ~d~H~~~~dE~FyqlkG~m~l~~~d~g~~~~V~i~eGemfllP~gv~HsP~r~~e   98 (286)
T 2qnk_A           44 KDYHIEEGEEVFYQLEGDMVLRVLEQGKHRDVVIRQGEIFLLPARVPHSPQRFAN   98 (286)
T ss_dssp             CCEEECSSCEEEEEEESCEEEEEEETTEEEEEEECTTEEEEECTTCCEEEEECTT
T ss_pred             ccCcCCCCCeEEEEEeCeEEEEEEeCCceeeEEECCCeEEEeCCCCCcCCcccCC
Confidence            4455 45799999999999999877 3 125899999999999999998755444

>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A

Probab=98.22  E-value=7.3e-06  Score=58.82  Aligned_cols=55  Identities=16%  Similarity=0.236  Sum_probs=44.8

Q ss_pred             CCceE--EEecCceEEEEEEecEEEEEe--CCCceEEEECCCcEEEEcCCCeEEEEEee
Q 037642            4 SPGKF--QLKFDAEETCYLLKGKVKVYP--KGSSDWVEFGAGDLVTIPKGLSCTWDVSV   58 (74)
Q Consensus         4 ~pg~~--~~~~~~~E~~~vleG~~~~~~--~~g~e~~~~~~GD~v~~p~g~~~~~~~~~   58 (74)
                      +|+..  +.|.+.+|++||++|++.+.+  .++.....|++||+++||+|..+.+.-.+
T Consensus        52 ~p~gl~~Phh~~A~ei~yV~~G~g~~g~V~~~~~~~~~l~~GDv~~~P~G~~h~~~N~g  110 (418)
T 3s7i_A           52 KPNTLVLPKHADADNILVIQQGQATVTVANGNNRKSFNLDEGHALRIPSGFISYILNRH  110 (418)
T ss_dssp             CTTEEEEEEEESEEEEEEEEESEEEEEEECSSCEEEEEEETTEEEEECTTCEEEEEECC
T ss_pred             cCCceeeeeeCCCCeEEEEEEeeEEEEEEecCCEEEEEecCCCEEEECCCCeEEEEecC
Confidence            46665  346789999999999998886  23335789999999999999999988754

>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A

Probab=98.19  E-value=7.8e-06  Score=57.99  Aligned_cols=46  Identities=15%  Similarity=0.312  Sum_probs=41.9

Q ss_pred             ceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEE
Q 037642           14 AEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVD   61 (74)
Q Consensus        14 ~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~   61 (74)
                      ..++++|++|++.+++++  +.+.+++||+|++|++..+++...++..
T Consensus       299 ~s~Vy~V~eG~G~~~I~~--~~~~w~~gD~fvvP~w~~h~~~n~~~a~  344 (368)
T 3nw4_A          299 GSTVFQVFEGAGAVVMNG--ETTKLEKGDMFVVPSWVPWSLQAETQFD  344 (368)
T ss_dssp             SCEEEEEEESCEEEEETT--EEEEECTTCEEEECTTCCEEEEESSSEE
T ss_pred             ccEEEEEEeCcEEEEECC--EEEEecCCCEEEECCCCcEEEEeCCCEE
Confidence            569999999999999998  5799999999999999999999887653

>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A

Probab=98.19  E-value=5.1e-06  Score=58.91  Aligned_cols=54  Identities=17%  Similarity=0.156  Sum_probs=43.3

Q ss_pred             CCceE---EEecCceEEEEEEecEEE-EEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeE
Q 037642            4 SPGKF---QLKFDAEETCYLLKGKVK-VYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAV   60 (74)
Q Consensus         4 ~pg~~---~~~~~~~E~~~vleG~~~-~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~   60 (74)
                      .||.-   +.|. ..|++|||+|++. +.++|  +.+.+++||++++|+|..|...-.+.-
T Consensus       111 ~PG~~~~~HrH~-~~ev~~VleG~G~~~~vdG--~~~~~~~GD~v~iP~g~~H~~~N~gde  168 (368)
T 3nw4_A          111 GPRETAPEHRHS-QNAFRFVVEGEGVWTVVNG--DPVRMSRGDLLLTPGWCFHGHMNDTDQ  168 (368)
T ss_dssp             CTTCEEEEEEES-SCEEEECSSCEEEEEEETT--EEEEEETTCEEEECTTCCEEEEECSSS
T ss_pred             CCCCccCceecc-cceEEEEEecceEEEEECC--EEEEEeCCCEEEECCCCcEEeEeCCCC
Confidence            45553   3444 5799999999995 66666  579999999999999999999986543

>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A

Probab=98.17  E-value=2.2e-05  Score=57.38  Aligned_cols=67  Identities=13%  Similarity=0.112  Sum_probs=49.9

Q ss_pred             CCceEE--EecCceEEEEEEecEEEEEeCCC----------------------------ceEEEECCCcEEEEcCCCeEE
Q 037642            4 SPGKFQ--LKFDAEETCYLLKGKVKVYPKGS----------------------------SDWVEFGAGDLVTIPKGLSCT   53 (74)
Q Consensus         4 ~pg~~~--~~~~~~E~~~vleG~~~~~~~~g----------------------------~e~~~~~~GD~v~~p~g~~~~   53 (74)
                      +||...  ...+..+++||++|++.+.+...                            .+...|++||+++||+|..+.
T Consensus        53 ~pggl~~Ph~~~~~~i~yV~~G~g~vg~v~pgc~et~~~~~~~~~~~~~~~~~~~~d~~qkv~~l~~GDvi~iPaG~~h~  132 (493)
T 2d5f_A           53 NRNGLHLPSYSPYPQMIIVVQGKGAIGFAFPGCPETFEKPQQQSSRRGSRSQQQLQDSHQKIRHFNEGDVLVIPPGVPYW  132 (493)
T ss_dssp             CTTEEEEEEECSSCEEEEEEECEEEEEECCTTCCCCEEECC-------------CSEEESCEEEEETTEEEEECTTCCEE
T ss_pred             CCCcEeCceecCCCeEEEEEeCEEEEEEEeCCCccccccccccccccccccccccccccceEEEecCCCEEEECCCCcEE
Confidence            567752  23467899999999999987620                            025789999999999999999


Q ss_pred             EEEee--eEEEEEEEecCC
Q 037642           54 WDVSV--AVDKYYKFESTS   70 (74)
Q Consensus        54 ~~~~~--~~~k~y~~~~~~   70 (74)
                      +.-.+  +++.+.+++...
T Consensus       133 ~~N~g~~~l~~v~~~d~~n  151 (493)
T 2d5f_A          133 TYNTGDEPVVAISLLDTSN  151 (493)
T ss_dssp             EEECSSSCEEEEEEECTTC
T ss_pred             EEeCCCCCEEEEEEecCcC
Confidence            98775  455555565443

>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A

Probab=98.13  E-value=1.3e-05  Score=55.32  Aligned_cols=53  Identities=15%  Similarity=0.226  Sum_probs=48.0

Q ss_pred             CceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEEEe
Q 037642           13 DAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFE   67 (74)
Q Consensus        13 ~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~~   67 (74)
                      ..+-++++|||+..|++++.  ++.|++||.++||+|..++|+..+..+.+++.-
T Consensus       225 ~~d~wiWqLEGss~Vt~~~q--~~~L~~~DsLLIpa~~~y~~~r~~gsv~L~I~~  277 (286)
T 2qnk_A          225 NVDVWLWQLEGSSVVTMGGR--RLSLAPDDSLLVLAGTSYAWERTQGSVALSVTQ  277 (286)
T ss_dssp             SSCEEEEEEESCEEEEETTE--EEEECTTEEEEECTTCCEEEEECTTCEEEEEEE
T ss_pred             cCcEEEEEEcCceEEEECCe--EEeccCCCEEEecCCCeEEEEecCCeEEEEEEE
Confidence            45899999999999999994  799999999999999999999999888888743

>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus}

Probab=98.10  E-value=1.8e-05  Score=57.55  Aligned_cols=66  Identities=17%  Similarity=0.233  Sum_probs=49.3

Q ss_pred             CCceE---EEecCceEEEEEEecEEEEEe--CCCce--------------------------------------EEEECC
Q 037642            4 SPGKF---QLKFDAEETCYLLKGKVKVYP--KGSSD--------------------------------------WVEFGA   40 (74)
Q Consensus         4 ~pg~~---~~~~~~~E~~~vleG~~~~~~--~~g~e--------------------------------------~~~~~~   40 (74)
                      +|+..   ++| +.+|+.||++|++.+.+  .+..+                                      ...+++
T Consensus        58 ~P~gl~~Ph~h-~a~ei~yV~qG~g~~g~v~pgc~etf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~hqk~~~~~~  136 (465)
T 3qac_A           58 EPHGLLLPSFT-SAPELIYIEQGNGITGMMIPGCPETYESGSQQFQGGEDERIREQGSRKFGMRGDRFQDQHQKIRHLRE  136 (465)
T ss_dssp             CTTEEEEEEEE-SSCEEEEEEECEEEEEEECTTCCCCC------------------------------CCCCCCEEEEET
T ss_pred             cCCcCcccEEc-CCCEEEEEEECcEEEEEecCCCCceeecchhccccccccccccccccccccccccccccccceeeecC
Confidence            46664   566 89999999999998874  32112                                      248999


Q ss_pred             CcEEEEcCCCeEEEEEee--eEEEEEEEecCC
Q 037642           41 GDLVTIPKGLSCTWDVSV--AVDKYYKFESTS   70 (74)
Q Consensus        41 GD~v~~p~g~~~~~~~~~--~~~k~y~~~~~~   70 (74)
                      ||+++||+|..|.+.-.+  ++..+.+++...
T Consensus       137 GDvi~iPaG~~hw~~N~G~~~lv~v~~~d~~n  168 (465)
T 3qac_A          137 GDIFAMPAGVSHWAYNNGDQPLVAVILIDTAN  168 (465)
T ss_dssp             TEEEEECTTCEEEEECCSSSCEEEEEEECTTS
T ss_pred             CCEEEECCCCeEEEEcCCCCCEEEEEEEcCCC
Confidence            999999999999998764  566666666543

>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum}

Probab=98.06  E-value=4.2e-05  Score=56.05  Aligned_cols=65  Identities=14%  Similarity=0.182  Sum_probs=47.6

Q ss_pred             CCceE---EEecCceEEEEEEecEEEEEeC--CCceE----------------------EEECCCcEEEEcCCCeEEEEE
Q 037642            4 SPGKF---QLKFDAEETCYLLKGKVKVYPK--GSSDW----------------------VEFGAGDLVTIPKGLSCTWDV   56 (74)
Q Consensus         4 ~pg~~---~~~~~~~E~~~vleG~~~~~~~--~g~e~----------------------~~~~~GD~v~~p~g~~~~~~~   56 (74)
                      +||..   ++| +..|++||++|++.+.+-  +..++                      ..|++||+|+||+|..+.+--
T Consensus        54 ~pggl~lPh~~-~A~ei~~V~qG~g~~G~v~p~~~e~f~~~~~~~~~~~~~~~d~~qk~~~l~~GDV~viPaG~~h~~~N  132 (496)
T 3ksc_A           54 QRNALRRPYYS-NAPQEIFIQQGNGYFGMVFPGCPETFEEPQESEQGEGRRYRDRHQKVNRFREGDIIAVPTGIVFWMYN  132 (496)
T ss_dssp             CTTEEEEEEEE-SSCEEEEEEECCEEEEEECTTCCCC---------------CCCCCCEEEECTTEEEEECTTCEEEEEE
T ss_pred             cCCCEeCceEc-CCCEEEEEEeCceEEEEEeCCCCccchhhhhcccccccccccchheeeccCCCCEEEECCCCcEEEEc
Confidence            46664   455 899999999999988872  21122                      389999999999999998887


Q ss_pred             ee--eEEEEEEEecC
Q 037642           57 SV--AVDKYYKFEST   69 (74)
Q Consensus        57 ~~--~~~k~y~~~~~   69 (74)
                      .+  ++..+.+++..
T Consensus       133 ~G~~~lv~v~~~d~~  147 (496)
T 3ksc_A          133 DQDTPVIAVSLTDIR  147 (496)
T ss_dssp             CSSSCEEEEEEECTT
T ss_pred             CCCCCEEEEEEeccC
Confidence            65  45555555443

>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}

Probab=98.06  E-value=1.3e-05  Score=52.87  Aligned_cols=53  Identities=8%  Similarity=0.095  Sum_probs=43.6

Q ss_pred             cCceEEEEEEecEEEEEeCCCce-EEEECCCcEEEEcCCCeEEEEEe----eeEEEEEE
Q 037642           12 FDAEETCYLLKGKVKVYPKGSSD-WVEFGAGDLVTIPKGLSCTWDVS----VAVDKYYK   65 (74)
Q Consensus        12 ~~~~E~~~vleG~~~~~~~~g~e-~~~~~~GD~v~~p~g~~~~~~~~----~~~~k~y~   65 (74)
                      .+..|+++|++|++. .+++... .+.+.+||++++|+|..+.+...    ++.....+
T Consensus        27 ~~~~~i~~v~~G~~~-~i~~~~~~~~~l~~g~l~~i~p~~~h~~~~~~~~~~~~~~~~i   84 (276)
T 3gbg_A           27 INDYKMFWIDSGIAK-LIDKNCLVSYEINSSSIILLKKNSIQRFSLTSLSDENINVSVI   84 (276)
T ss_dssp             CSSCEEEEESSSCEE-EEETTTTEEEEECTTEEEEECTTCEEEEEEEECCSSCEEEEEE
T ss_pred             hcceEEEEEecCceE-EECCccceeEEEcCCCEEEEcCCCceeeccccCCCcceEEEEE
Confidence            478999999999999 8887300 69999999999999999999988    66644433

>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}

Probab=98.02  E-value=5.2e-05  Score=55.72  Aligned_cols=67  Identities=13%  Similarity=0.156  Sum_probs=49.8

Q ss_pred             CCceE--EEecCceEEEEEEecEEEEEeCCCc--------------------------------------eEEEECCCcE
Q 037642            4 SPGKF--QLKFDAEETCYLLKGKVKVYPKGSS--------------------------------------DWVEFGAGDL   43 (74)
Q Consensus         4 ~pg~~--~~~~~~~E~~~vleG~~~~~~~~g~--------------------------------------e~~~~~~GD~   43 (74)
                      +||..  ....+..+++||++|++.+.+...+                                      ....|++||+
T Consensus        56 ~p~gl~lPh~~~a~~~~yV~~G~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~qkv~~v~~GDv  135 (510)
T 3c3v_A           56 RRNALRRPFYSNAPQEIFIQQGRGYFGLIFPGCPSTYEEPAQQGRRYQSQRPPRRLQEEDQSQQQQDSHQKVHRFNEGDL  135 (510)
T ss_dssp             CTTEEEEEEECSSCEEEEEEECCEEEEEECTTCCCCEEEECCC--------------------CEEEEESCCEEECTTEE
T ss_pred             CCCCCccceecCCCeEEEEEeCEEEEEEEeCCCccccccccccccccccccccccccccccccccccccceEEEecCCCE
Confidence            46665  2234689999999999998875410                                      1368999999


Q ss_pred             EEEcCCCeEEEEEee--eEEEEEEEecCC
Q 037642           44 VTIPKGLSCTWDVSV--AVDKYYKFESTS   70 (74)
Q Consensus        44 v~~p~g~~~~~~~~~--~~~k~y~~~~~~   70 (74)
                      ++||+|..+.+.-.+  +++.+.+++...
T Consensus       136 i~iPaG~~hw~~N~g~~~l~~v~~~d~~n  164 (510)
T 3c3v_A          136 IAVPTGVAFWLYNDHDTDVVAVSLTDTNN  164 (510)
T ss_dssp             EEECTTCEEEEEECSSSCEEEEEEECTTB
T ss_pred             EEECCCCCEEEEeCCCCCEEEEEEeCCCC
Confidence            999999999998765  566666666554

>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B

Probab=98.01  E-value=5.7e-05  Score=54.49  Aligned_cols=57  Identities=16%  Similarity=0.278  Sum_probs=45.0

Q ss_pred             CCceE---EEecCceEEEEEEecEEEEEeCCCc----------e----EEEECCCcEEEEcCCCeEEEEEeeeE
Q 037642            4 SPGKF---QLKFDAEETCYLLKGKVKVYPKGSS----------D----WVEFGAGDLVTIPKGLSCTWDVSVAV   60 (74)
Q Consensus         4 ~pg~~---~~~~~~~E~~~vleG~~~~~~~~g~----------e----~~~~~~GD~v~~p~g~~~~~~~~~~~   60 (74)
                      .||..   +||....|+.||++|++.+.+-+..          .    ...+++||+++||+|..+.-.-.+++
T Consensus       289 ~pg~m~~PH~hp~A~ei~~V~~G~~~v~vv~~~~~~~~~~~g~~~~~~~~~l~~GdV~vvP~g~~h~~~n~~~~  362 (445)
T 2cav_A          289 NEGALFVPHYNSRATVILVANEGRAEVELVGLEQQQQQGLESMQLRRYAATLSEGDIIVIPSSFPVALKAASDL  362 (445)
T ss_dssp             CTTEEEEEEEESSCEEEEEEEESCEEEEEEEC-----------CCEEEEEEECTTCEEEECTTCCEEEEESSSE
T ss_pred             eCCceeeeEECCCCcEEEEEEeeEEEEEEEeCCCcccccccCcceEEEEeEecCCcEEEEcCCcEEEEEcCCCe
Confidence            46664   6888899999999999998874321          1    35599999999999999987777653

>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A

Probab=97.97  E-value=4.9e-05  Score=54.53  Aligned_cols=57  Identities=14%  Similarity=0.183  Sum_probs=44.0

Q ss_pred             CCceE---EEecCceEEEEEEecEEEEEeCC--C-------------------------ce-EEEECCCcEEEEcCCCeE
Q 037642            4 SPGKF---QLKFDAEETCYLLKGKVKVYPKG--S-------------------------SD-WVEFGAGDLVTIPKGLSC   52 (74)
Q Consensus         4 ~pg~~---~~~~~~~E~~~vleG~~~~~~~~--g-------------------------~e-~~~~~~GD~v~~p~g~~~   52 (74)
                      .||..   +||....|+.||++|++.+.+-+  +                         .. ...+++||+++||+|..+
T Consensus       271 ~pgg~~~PH~~p~A~ei~yV~~G~g~v~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vvP~G~~~  350 (418)
T 3s7i_A          271 KEGALMLPHFNSKAMVIVVVNKGTGNLELVAVRKEQQQRGRREEEEDEDEEEEGSNREVRRYTARLKEGDVFIMPAAHPV  350 (418)
T ss_dssp             CTTEEEEEEEESSCEEEEEEEECCEEEEEEEEEEC-------------------CCEEEEEEEEEECTTCEEEECTTCCE
T ss_pred             cCCceeCceecCCCCEEEEEEeCeEEEEEEeCCCccccccccccccccccccccccccceEEEeeeCCCCEEEECCCCEE
Confidence            45554   57777899999999999887642  1                         01 356899999999999999


Q ss_pred             EEEEeeeE
Q 037642           53 TWDVSVAV   60 (74)
Q Consensus        53 ~~~~~~~~   60 (74)
                      .+.-.+++
T Consensus       351 ~~~~~~~l  358 (418)
T 3s7i_A          351 AINASSEL  358 (418)
T ss_dssp             EEEESSCE
T ss_pred             EEECCCCE
Confidence            98877663

>1eyb_A Homogentisate 1,2-dioxygenase; jelly roll, beta sandwich, oxidoreductase; 1.90A {Homo sapiens} SCOP: b.82.1.4 PDB: 1ey2_A

Probab=97.96  E-value=4.8e-05  Score=55.48  Aligned_cols=61  Identities=16%  Similarity=0.208  Sum_probs=52.9

Q ss_pred             eEEEecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEEEecCC
Q 037642            7 KFQLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFESTS   70 (74)
Q Consensus         7 ~~~~~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~~~~~   70 (74)
                      .+-++.+.++++++.+|.+.|..+=|  .+.++|||+++||.|.+.++++.++ ...|++...+
T Consensus       171 ~~f~NaDGD~Livpq~G~l~i~TEfG--~L~v~pgei~VIPRGi~frv~l~~p-~Rgyi~E~~g  231 (471)
T 1eyb_A          171 RCFYNSDGDFLIVPQKGNLLIYTEFG--KMLVQPNEICVIQRGMRFSIDVFEE-TRGYILEVYG  231 (471)
T ss_dssp             EEEEESSEEEEEEEEESCEEEEETTE--EEEECTTEEEEECTTCCEEEECSSS-EEEEEEEEES
T ss_pred             ceeecCCCCEEEEEEeCCEEEEEecc--cEEeccCCEEEECCccEEEEeeCCC-ceEEEEEccC
Confidence            34567889999999999999999998  5999999999999999999999885 4778876544

>2y0o_A Probable D-lyxose ketol-isomerase; carbohydrate metabolism, metal-binding, sugar ISO stress response; HET: MSE; 1.23A {Bacillus subtilis subsp}

Probab=97.90  E-value=0.00036  Score=45.03  Aligned_cols=44  Identities=27%  Similarity=0.359  Sum_probs=38.0

Q ss_pred             ceEEEEEEecEEEEEeCCCc-------------------eEEEECCCcEEEEcCCCeEEEEEe
Q 037642           14 AEETCYLLKGKVKVYPKGSS-------------------DWVEFGAGDLVTIPKGLSCTWDVS   57 (74)
Q Consensus        14 ~~E~~~vleG~~~~~~~~g~-------------------e~~~~~~GD~v~~p~g~~~~~~~~   57 (74)
                      -.|-++|+.|.+++..++..                   ..+.++|||.+.||+|..|.+...
T Consensus        80 K~E~~ivr~G~v~l~~~g~~~~~~~v~v~dg~~~~~~a~~~i~L~pGesvtIppg~~H~f~ag  142 (175)
T 2y0o_A           80 KQETFRCRYGKVYLYVEGEKTPLPKVLPPQEDREHYTVWHEIELEPGGQYTIPPNTKHWFQAG  142 (175)
T ss_dssp             CCEEEEEEEEEEEEEESSSCCSSCSCCCCGGGGGGCCCCEEEEECTTCEEEECTTCCEEEEEE
T ss_pred             CceeEEEecCEEEEEECCccccCcceeccCCceeeecCCcEEEECCCCEEEECCCCcEEEEeC
Confidence            67999999999999997641                   126999999999999999999983

>3cjx_A Protein of unknown function with A cupin-like FOL; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.60A {Ralstonia eutropha}

Probab=97.87  E-value=4.1e-05  Score=48.74  Aligned_cols=53  Identities=11%  Similarity=0.090  Sum_probs=43.2

Q ss_pred             CceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEee----eEEEEEEEec
Q 037642           13 DAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSV----AVDKYYKFES   68 (74)
Q Consensus        13 ~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~----~~~k~y~~~~   68 (74)
                      +..|..|||+|.+... +++  ...+++||.+.+|+|..|+..+.+    .+..+++..+
T Consensus        62 ~g~ee~~VL~G~f~~~-~~~--~~~~~aGd~~~~P~g~~H~~~a~~~~~~gci~l~v~~G  118 (165)
T 3cjx_A           62 TGTVHMYTISGCWYYT-EYP--GQKQTAGCYLYEPGGSIHQFNTPRDNEGQTEVIFMLSG  118 (165)
T ss_dssp             SSCEEEEEEESEEEET-TCT--TSCEETTEEEEECTTCEECEECCTTCSSCEEEEEEEES
T ss_pred             CCCEEEEEEEEEEEEC-CCc--eEEECCCeEEEeCCCCceeeEeCCCCCCCcEEEEEEec
Confidence            4689999999999873 221  367899999999999999999987    7777886654

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=97.74  E-value=0.00011  Score=49.96  Aligned_cols=58  Identities=16%  Similarity=0.213  Sum_probs=46.0

Q ss_pred             EEEecCceEEEEEEecEEEEEe---CCCceEEEECC-C---cEEEEcCCCeEEEEEee--eEEEEEEE
Q 037642            8 FQLKFDAEETCYLLKGKVKVYP---KGSSDWVEFGA-G---DLVTIPKGLSCTWDVSV--AVDKYYKF   66 (74)
Q Consensus         8 ~~~~~~~~E~~~vleG~~~~~~---~~g~e~~~~~~-G---D~v~~p~g~~~~~~~~~--~~~k~y~~   66 (74)
                      |++|....|.++|++|++.+.+   ..+ +.+.+.. |   |.++||+|..|.....+  ++.-.|..
T Consensus       287 ~h~h~~~~e~~~~~~G~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ip~g~~h~~~n~~~~~~~~~~~~  353 (369)
T 3st7_A          287 NHWHHTKNEKFLVVSGKGVIRFRHVNDD-EIIEYYVSGDKLEVVDIPVGYTHNIENLGDTDMVTIMWV  353 (369)
T ss_dssp             EEECSSCCEEEEEEESEEEEEEEETTCC-CCEEEEEETTBCCEEEECTTEEEEEEECSSSCEEEEEEE
T ss_pred             cccccCcceEEEEEeeeEEEEEEcCCCC-cEEEEEecCCcceEEEeCCCceEEeEEcCCCcEEEEEec
Confidence            5788889999999999999942   333 5688888 8   99999999999999876  45444443

>3ebr_A Uncharacterized RMLC-like cupin; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.60A {Ralstonia eutropha JMP134}

Probab=97.70  E-value=7.7e-05  Score=47.08  Aligned_cols=53  Identities=11%  Similarity=0.056  Sum_probs=41.3

Q ss_pred             CceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEe----eeEEEEEEEecC
Q 037642           13 DAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVS----VAVDKYYKFEST   69 (74)
Q Consensus        13 ~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~----~~~~k~y~~~~~   69 (74)
                      ...|..|||+|+..+. +.+   ..+.+||.++.|+|..|+..+.    +.+..+++...+
T Consensus        61 ~g~ee~~VL~G~~~~~-e~~---~~~~~Gd~~~~P~g~~H~~~~~~~~~e~~~~~~~~~G~  117 (159)
T 3ebr_A           61 TGTVIVYTVQGSWRYK-EHD---WVAHAGSVVYETASTRHTPQSAYAEGPDIITFNIVAGE  117 (159)
T ss_dssp             SSCEEEEEEESCEEET-TSS---CCBCTTCEEEECSSEEECEEESSSSSSCEEEEEEEESC
T ss_pred             CCCEEEEEEEeEEEEe-CCC---eEECCCeEEEECCCCcceeEeCCCCCCCEEEEEEecCc
Confidence            3578889999998764 332   4899999999999999999998    667656555443

>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein, storage protein, plant protein; 2.98A {Brassica napus}

Probab=97.67  E-value=0.00055  Score=49.86  Aligned_cols=35  Identities=11%  Similarity=0.076  Sum_probs=26.6

Q ss_pred             EEECCCcEEEEcCCCeEEEEEee--eEEEEEEEecCC
Q 037642           36 VEFGAGDLVTIPKGLSCTWDVSV--AVDKYYKFESTS   70 (74)
Q Consensus        36 ~~~~~GD~v~~p~g~~~~~~~~~--~~~k~y~~~~~~   70 (74)
                      ..|++||++.||+|..+.+.-.+  +++-+.+++...
T Consensus       147 ~~l~~GDvi~iPaG~~~~~~N~g~e~L~~l~~~d~~n  183 (466)
T 3kgl_A          147 EHIRTGDTIATHPGVAQWFYNDGNQPLVIVSVLDLAS  183 (466)
T ss_dssp             EEEETTEEEEECTTCEEEEECCSSSCEEEEEEEESSS
T ss_pred             ccccCCCEEEECCCCcEEEEeCCCCcEEEEEEEcCCC
Confidence            38999999999999999998765  455555554433

>2wfp_A Mannose-6-phosphate isomerase; APO-structure, metal-binding; 1.67A {Salmonella typhimurium} PDB: 3h1w_A 3h1m_A 3h1y_A*

Probab=97.30  E-value=0.0018  Score=46.06  Aligned_cols=48  Identities=6%  Similarity=0.080  Sum_probs=36.9

Q ss_pred             ceEEEecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCC-eEEEE
Q 037642            6 GKFQLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGL-SCTWD   55 (74)
Q Consensus         6 g~~~~~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~-~~~~~   55 (74)
                      +......+...++.|++|++++..++  ++..+++||.++||++. ..+.+
T Consensus       334 ~~~~~~~~~~~il~v~~G~~~l~~~~--~~~~l~~G~~~fvpa~~~~~~i~  382 (394)
T 2wfp_A          334 QETSIGQHSAAILFCVEGEAVLRKDE--QRLVLKPGESAFIGADESPVNAS  382 (394)
T ss_dssp             SCEEECCSSCEEEEEEEEEEEEEETT--EEEEECTTCEEEECGGGCCEEEE
T ss_pred             CeEEecCCCcEEEEEEeceEEEEECC--eEEEEccCcEEEEeCCCceEEEE
Confidence            33333445678999999999999876  46899999999999984 44444

>2pa7_A DTDP-6-deoxy-3,4-keto-hexulose isomerase; deoxysugar biosynthesis, S-layer biosynthesis, ketoisomerase; HET: TYD; 1.50A {Aneurinibacillus thermoaerophilus} SCOP: b.82.1.1 PDB: 2pae_A* 2pak_A* 2pam_A*

Probab=97.20  E-value=0.0042  Score=38.55  Aligned_cols=53  Identities=9%  Similarity=0.047  Sum_probs=42.6

Q ss_pred             EEEecCceEEEEEEecEEEEEeCCCc--eEEEECCCc-EEEEcCCCeEEEEEeeeE
Q 037642            8 FQLKFDAEETCYLLKGKVKVYPKGSS--DWVEFGAGD-LVTIPKGLSCTWDVSVAV   60 (74)
Q Consensus         8 ~~~~~~~~E~~~vleG~~~~~~~~g~--e~~~~~~GD-~v~~p~g~~~~~~~~~~~   60 (74)
                      |+.|....+++++++|++.+.+++|.  +.+.|.+.. .+.||+|..++....++-
T Consensus        50 ~H~Hk~~~q~li~l~Gs~~v~ldDg~~~~~~~L~~~~~gL~IppgvWh~~~~~s~~  105 (141)
T 2pa7_A           50 FHAHKKLEQVLVCLNGSCRVILDDGNIIQEITLDSPAVGLYVGPAVWHEMHDFSSD  105 (141)
T ss_dssp             EEEESSCCEEEEEEESCEEEEEECSSCEEEEEECCTTEEEEECTTCEEEEECCCTT
T ss_pred             cCcCCCceEEEEEEccEEEEEEECCcEEEEEEECCCCcEEEeCCCEEEEEEEcCCC
Confidence            56778889999999999999998884  235565544 589999999999887653

>3bal_A Acetylacetone-cleaving enzyme; jelly roll, tetramer, dioxygenase, iron, metal-binding, oxidoreductase; 1.95A {Acinetobacter johnsonii}

Probab=97.07  E-value=0.0018  Score=40.93  Aligned_cols=65  Identities=18%  Similarity=0.110  Sum_probs=42.2

Q ss_pred             CCce-EEEe-cCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEE-EEEeeeEEEEEEEec
Q 037642            4 SPGK-FQLK-FDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCT-WDVSVAVDKYYKFES   68 (74)
Q Consensus         4 ~pg~-~~~~-~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~-~~~~~~~~k~y~~~~   68 (74)
                      +||. +..| .+..|.++||+|...+...+-.....+.+|+.++.|+|..|+ +...+....++++..
T Consensus        54 ~pG~~~p~H~H~g~ee~~VL~G~~~~~~Gd~~~~~~~~aGsYv~ePpGs~H~p~~~~~~~~~~~~~~G  121 (153)
T 3bal_A           54 PAGSSFASHIHAGPGEYFLTKGKMEVRGGEQEGGSTAYAPSYGFESSGALHGKTFFPVESQFYMTFLG  121 (153)
T ss_dssp             CTTEEECCEEESSCEEEEEEESEEEETTCGGGTSEEEESSEEEEECTTCEESCCEESSCEEEEEEEES
T ss_pred             CCCCCccCccCCCCEEEEEEEEEEEecCccccCccccCCCeEEEcCCCCcccceeCCCCeEEEEEEEC
Confidence            4555 3222 356788999999997644221012678999999999999998 444544434444443

>3o14_A Anti-ecfsigma factor, CHRR; cupin, structural genomics, joint center for structura genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Marinobacter aquaeolei}

Probab=97.07  E-value=0.003  Score=41.72  Aligned_cols=55  Identities=20%  Similarity=0.270  Sum_probs=40.9

Q ss_pred             CCceE-EEe-cCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEE
Q 037642            4 SPGKF-QLK-FDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYK   65 (74)
Q Consensus         4 ~pg~~-~~~-~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~   65 (74)
                      +||.. ..| .+..|..|||+|.+.  +++    ..+.+||.+..|+|..|...+.+.+. +|+
T Consensus        51 ~pG~~~p~H~H~g~Ee~~VL~G~f~--d~~----~~~~~Gd~~~~P~g~~H~p~a~~gc~-~~v  107 (223)
T 3o14_A           51 APGSRFSAHTHDGGEEFIVLDGVFQ--DEH----GDYPAGTYVRNPPTTSHVPGSAEGCT-IFV  107 (223)
T ss_dssp             CTTEECCCEECTTCEEEEEEEEEEE--ETT----EEEETTEEEEECTTCEECCEESSCEE-EEE
T ss_pred             CCCCCcccccCCCCEEEEEEEeEEE--ECC----eEECCCeEEEeCCCCccccEeCCCCE-EEE
Confidence            45553 223 347899999999975  333    48999999999999999988877764 444

>3ejk_A DTDP sugar isomerase; YP_390184.1, structural genomics, JOIN for structural genomics, JCSG; HET: CIT; 1.95A {Desulfovibrio desulfuricans subsp}

Probab=97.05  E-value=0.0083  Score=38.44  Aligned_cols=61  Identities=11%  Similarity=0.011  Sum_probs=48.0

Q ss_pred             EEEecCceEEEEEEecEEEEEeCCCc---------eEEEEC---CCcEEEEcCCCeEEEEEeee--EEEEEEEec
Q 037642            8 FQLKFDAEETCYLLKGKVKVYPKGSS---------DWVEFG---AGDLVTIPKGLSCTWDVSVA--VDKYYKFES   68 (74)
Q Consensus         8 ~~~~~~~~E~~~vleG~~~~~~~~g~---------e~~~~~---~GD~v~~p~g~~~~~~~~~~--~~k~y~~~~   68 (74)
                      +++|....+++.|++|++.+.+.+..         ..+.|.   +.-.++||+|..|.+.+.++  ..-.|.++.
T Consensus        68 ~H~h~~q~klv~~v~G~v~dv~vD~R~~SpTfg~~~~v~Ls~~~n~~~L~IP~G~aHgf~~lsd~~av~ly~~s~  142 (174)
T 3ejk_A           68 WKRHSLMTQLFAVPVGCIHVVLYDGREKSPTSGRLAQVTLGRPDNYRLLRIPPQVWYGFAATGDTPALVANCTDI  142 (174)
T ss_dssp             EEEESSCCEEEEEEESEEEEEEECCCTTCTTTTCEEEEEEETTTBCEEEEECTTCEEEEEECTTSCEEEEEEESS
T ss_pred             cEecCCCceEEEEEeeEEEEEEEeCCCCCCCCCeEEEEEECCccCceEEEeCCCcEEEEEEccCCCEEEEEECCC
Confidence            46777789999999999999985542         246677   56799999999999998765  666677654

>1zx5_A Mannosephosphate isomerase, putative; STRU genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; HET: LFR; 2.30A {Archaeoglobus fulgidus} SCOP: b.82.1.3

Probab=96.86  E-value=0.013  Score=40.11  Aligned_cols=40  Identities=15%  Similarity=0.186  Sum_probs=32.4

Q ss_pred             Cce-EEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCC-eEEEE
Q 037642           13 DAE-ETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGL-SCTWD   55 (74)
Q Consensus        13 ~~~-E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~-~~~~~   55 (74)
                      +.. .++.|++| +++..++  +...+++||.++||++. ..+.+
T Consensus       246 ~~~~~il~v~~G-~~i~~~~--~~~~l~~G~~~~ipa~~~~~~i~  287 (300)
T 1zx5_A          246 GGVMNILYAAEG-YFILRGK--ETADLHRGYSCLVPASTDSFTVE  287 (300)
T ss_dssp             CSBCEEEEEEES-CEEEESS--SEEEECTTCEEEECTTCCEEEEE
T ss_pred             CCceEEEEEccc-EEEEeCC--eEEEEccceEEEEeCCCceEEEE
Confidence            456 89999999 9998855  36899999999999987 44443

>1qwr_A Mannose-6-phosphate isomerase; structural genomics, D-mannose 6-phosphate, PSI, protein structure initiative; 1.80A {Bacillus subtilis} SCOP: b.82.1.3

Probab=96.83  E-value=0.01  Score=40.89  Aligned_cols=45  Identities=11%  Similarity=0.248  Sum_probs=34.9

Q ss_pred             CceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeE
Q 037642           13 DAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAV   60 (74)
Q Consensus        13 ~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~   60 (74)
                      +...++.|++|++++..++  +...+++||.++||++.. .+++.+.+
T Consensus       268 ~~~~il~v~~G~~~l~~~~--~~~~l~~G~~~~vpa~~~-~~~i~g~~  312 (319)
T 1qwr_A          268 ESFLICSVIEGSGLLKYED--KTCPLKKGDHFILPAQMP-DFTIKGTC  312 (319)
T ss_dssp             SSCEEEEEEEEEEEEEETT--EEEEEETTCEEEECTTCC-CEEEEEEE
T ss_pred             CccEEEEEEcCeEEEEECC--EEEEEcCCcEEEEeCCCc-eEEEEece
Confidence            4578999999999998854  478999999999999872 23444443

>2qjv_A Uncharacterized IOLB-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.90A {Salmonella typhimurium LT2}

Probab=96.81  E-value=0.015  Score=39.74  Aligned_cols=61  Identities=18%  Similarity=0.182  Sum_probs=47.0

Q ss_pred             EEEecCceEEEE-EEecEEEEEeCCCceEEEE-CC---------CcEEEEcCCCeEEEEEeeeEEEEEEEecCCC
Q 037642            8 FQLKFDAEETCY-LLKGKVKVYPKGSSDWVEF-GA---------GDLVTIPKGLSCTWDVSVAVDKYYKFESTSS   71 (74)
Q Consensus         8 ~~~~~~~~E~~~-vleG~~~~~~~~g~e~~~~-~~---------GD~v~~p~g~~~~~~~~~~~~k~y~~~~~~~   71 (74)
                      +....+..|+++ .|.|.++|+.++.  ++.+ ..         .|++++|+|...+.+...+ .++|++.++..
T Consensus        42 ~~~~~~~~E~~iv~l~G~~~V~~~g~--~~~~~g~R~svF~~~~p~~lYvp~g~~v~i~a~~~-~~~~v~sAp~~  113 (270)
T 2qjv_A           42 ITLPSDERERCLVLVAGLASVXAADS--FFYRIGQRMSPFERIPAYSVYLPHHTEAXVTAETD-LELAVCSAPGF  113 (270)
T ss_dssp             EEECCSSEEEEEEEEESCEEEEETTE--EEEEECCCSSGGGCSCCCEEEECSSCCEEEEESSS-EEEEEEEEECC
T ss_pred             EEecCCCcEEEEEEecceEEEEECCE--EEeccccccccccCCCCcEEEECCCCEEEEEecCC-ceEEEEeeecC
Confidence            345555566665 5799999999983  5655 32         5999999999999998888 69999988753

>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A

Probab=96.79  E-value=0.017  Score=42.78  Aligned_cols=36  Identities=22%  Similarity=0.202  Sum_probs=28.8

Q ss_pred             EEEECCCcEEEEcCCCeEEEEEee--eEEEEEEEecCC
Q 037642           35 WVEFGAGDLVTIPKGLSCTWDVSV--AVDKYYKFESTS   70 (74)
Q Consensus        35 ~~~~~~GD~v~~p~g~~~~~~~~~--~~~k~y~~~~~~   70 (74)
                      ...+++||++.||+|..+.|--.+  ++.-+++++.++
T Consensus       173 v~~vr~GDviaiPaG~~~w~yN~G~~~l~iv~~~Dt~n  210 (531)
T 3fz3_A          173 TRRIREGDVVAIPAGVAYWSYNDGDQELVAVNLFHVSS  210 (531)
T ss_dssp             CEEEETTEEEEECTTCCEEEECCSSSCEEEEEEEETTC
T ss_pred             eecccCCcEEEECCCCeEEEEeCCCceEEEEEEEcccc
Confidence            357899999999999999998765  466677776654

>1pmi_A PMI, phosphomannose isomerase; aldose-ketose isomerase; 1.70A {Candida albicans} SCOP: b.82.1.3

Probab=96.49  E-value=0.016  Score=41.74  Aligned_cols=46  Identities=13%  Similarity=0.180  Sum_probs=36.2

Q ss_pred             cCceEEEEEEecEEEEEeCCCceE-EEECCCcEEEEcCCCeEEEEEe
Q 037642           12 FDAEETCYLLKGKVKVYPKGSSDW-VEFGAGDLVTIPKGLSCTWDVS   57 (74)
Q Consensus        12 ~~~~E~~~vleG~~~~~~~~g~e~-~~~~~GD~v~~p~g~~~~~~~~   57 (74)
                      .+...+++|++|++++..+++... ..+++||.++||++...+.+..
T Consensus       377 ~~~~~illv~~G~g~i~~~~~~~~~~~l~~G~~~fvpa~~~~~i~g~  423 (440)
T 1pmi_A          377 LNGPSIVIATNGKGTIQITGDDSTKQKIDTGYVFFVAPGSSIELTAD  423 (440)
T ss_dssp             CSSCEEEEEEESEEEEEETTCGGGCEEEETTCEEEECTTCCEEEEEC
T ss_pred             CCCcEEEEEEeCeEEEEeCCcccceEEeccCCEEEEeCCCcEEEEEe
Confidence            456789999999999998764112 7899999999999966555543

>1ywk_A 4-deoxy-L-threo-5-hexosulose-uronate ketol- isomerase 1; structural genomics, nysgxrc target T1814, PSI, protein structure initiative; 2.95A {Enterococcus faecalis} SCOP: b.82.1.13

Probab=96.35  E-value=0.011  Score=40.88  Aligned_cols=56  Identities=14%  Similarity=0.086  Sum_probs=43.7

Q ss_pred             CceEEEEE-EecEEEEEeCCCceEEEECCCcEEEEcCCCe-EEEEE---eeeEEEEEEEecCCC
Q 037642           13 DAEETCYL-LKGKVKVYPKGSSDWVEFGAGDLVTIPKGLS-CTWDV---SVAVDKYYKFESTSS   71 (74)
Q Consensus        13 ~~~E~~~v-leG~~~~~~~~g~e~~~~~~GD~v~~p~g~~-~~~~~---~~~~~k~y~~~~~~~   71 (74)
                      +..|+++| |.|.++|+.++  +.+.+.+-|.+++|+|.+ .++..   ..+ .++|++.++..
T Consensus        77 ~~rE~~iV~lgG~~~V~vdg--~~f~lg~~dalYVp~G~~~v~~as~d~~~~-a~fav~sAPa~  137 (289)
T 1ywk_A           77 ERRELGVINIGGPGFIEIDG--AKETMKKQDGYYIGKETKHVRFSSENPDNP-AKFYISCVPAH  137 (289)
T ss_dssp             TTEEEEEEECSSCEEEEETT--EEEEECTTCEEEECTTCCCEEEEESCTTSC-CCEEEEEEECS
T ss_pred             CCcEEEEEEccCeEEEEECC--EEEecCCCCEEEeCCCCeEEEEEecCCCCC-eEEEEEccccC
Confidence            45676655 68999999998  468999999999999987 66654   233 58999988753

>4gjz_A Lysine-specific demethylase 8; JMJC, beta barrel, Fe(II) and 2-oxoglutarate binding, oxidor; HET: AKG BME; 1.05A {Homo sapiens} PDB: 4gjy_A* 4aap_A* 3uyj_A*

Probab=95.85  E-value=0.016  Score=36.70  Aligned_cols=56  Identities=13%  Similarity=0.055  Sum_probs=39.4

Q ss_pred             CCceE-EEecC-ceEEEEEEecEEEEEeCCC-------------------------------------ceEEEECCCcEE
Q 037642            4 SPGKF-QLKFD-AEETCYLLKGKVKVYPKGS-------------------------------------SDWVEFGAGDLV   44 (74)
Q Consensus         4 ~pg~~-~~~~~-~~E~~~vleG~~~~~~~~g-------------------------------------~e~~~~~~GD~v   44 (74)
                      .+|+. ..|++ .+-+...+.|+=++.+-.-                                     .-...++|||++
T Consensus       132 ~~gs~t~~H~D~~~n~~~qv~G~K~w~L~pP~~~~~l~~~~~~~~~~~s~vd~~~~d~~~~p~~~~~~~~~~~l~pGD~L  211 (235)
T 4gjz_A          132 PQGTISPLHQDPQQNFLVQVMGRKYIRLYSPQESGALYPHDTHLLHNTSQVDVENPDLEKFPKFAKAPFLSCILSPGEIL  211 (235)
T ss_dssp             CTTCEEEEECCSSEEEEEEEESCEEEEEECGGGGGGSCBCSSTTTTTBBSSCTTSCCTTTCGGGGGCCCEEEEECTTCEE
T ss_pred             CCCCCceeeeccccceEEEEeeeEeeEEcCcccccccccCcccccCccccccccCcchhhCccccCCCcEEEEECCCCEE
Confidence            44554 35666 4667778899888775100                                     014689999999


Q ss_pred             EEcCCCeEEEEEeee
Q 037642           45 TIPKGLSCTWDVSVA   59 (74)
Q Consensus        45 ~~p~g~~~~~~~~~~   59 (74)
                      +||+|+.|.-...+.
T Consensus       212 yiP~gW~H~V~~l~~  226 (235)
T 4gjz_A          212 FIPVKYWHYVRALDL  226 (235)
T ss_dssp             EECTTCEEEEEESSS
T ss_pred             EeCCCCcEEEEECCC
Confidence            999999998776654

>1xru_A 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomer; beta barrel, cupin, isomerase; HET: 1PE; 1.94A {Escherichia coli} SCOP: b.82.1.13 PDB: 1x8m_A

Probab=95.51  E-value=0.038  Score=37.96  Aligned_cols=57  Identities=18%  Similarity=0.257  Sum_probs=43.9

Q ss_pred             CceEEEEE-EecEEEEEeCCCceEEEECCCcEEEEcCCCe-EEEEEeee--EEEEEEEecCCC
Q 037642           13 DAEETCYL-LKGKVKVYPKGSSDWVEFGAGDLVTIPKGLS-CTWDVSVA--VDKYYKFESTSS   71 (74)
Q Consensus        13 ~~~E~~~v-leG~~~~~~~~g~e~~~~~~GD~v~~p~g~~-~~~~~~~~--~~k~y~~~~~~~   71 (74)
                      +..|+++| |.|.+.|+.++  +.+.+..-|.+++|+|.+ .++.....  -.++|++.++..
T Consensus        77 ~~rE~~iV~l~G~~~V~vdG--~~f~lg~~dalYVp~g~~~v~~as~da~~~a~fav~sAPa~  137 (282)
T 1xru_A           77 ERRELGVINIGGAGTITVDG--QCYEIGHRDALYVGKGAKEVVFASIDTGTPAKFYYNCAPAH  137 (282)
T ss_dssp             TTEEEEEEECSSCEEEEETT--EEEEECTTCEEEECTTCCCEEEEESCTTSCCCEEEEEEECS
T ss_pred             CCcEEEEEEccCeEEEEECC--EEEecCCCCEEEeCCCCeEEEEEecCCCCCeEEEEEccccC
Confidence            45666655 68999999998  468999999999999997 66664431  258999988753

>3o14_A Anti-ecfsigma factor, CHRR; cupin, structural genomics, joint center for structura genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Marinobacter aquaeolei}

Probab=95.48  E-value=0.16  Score=33.26  Aligned_cols=46  Identities=17%  Similarity=0.271  Sum_probs=35.5

Q ss_pred             CceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEE
Q 037642           13 DAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYK   65 (74)
Q Consensus        13 ~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~   65 (74)
                      ...|+ +||+|++.  .++    ..+.+|+.+.+|+|..++......-..+|+
T Consensus       165 gG~Ei-lVL~G~~~--d~~----~~~~~GsWlR~P~gs~h~~~ag~~g~~i~~  210 (223)
T 3o14_A          165 GGIEV-LVLDGDVT--VND----EVLGRNAWLRLPEGEALSATAGARGAKIWM  210 (223)
T ss_dssp             SCEEE-EEEEEEEE--ETT----EEECTTEEEEECTTCCEEEEEEEEEEEEEE
T ss_pred             CcEEE-EEEEeEEE--ECC----ceECCCeEEEeCCCCccCcEECCCCeEEEE
Confidence            45675 99999964  333    489999999999999999998444345665

>2vec_A YHAK, pirin-like protein YHAK; ROS, bicupin, sulfenic acid, reactive cysteine, cytosolic protein; 1.85A {Escherichia coli}

Probab=95.45  E-value=0.1  Score=35.09  Aligned_cols=50  Identities=12%  Similarity=0.108  Sum_probs=38.6

Q ss_pred             EEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEEEe
Q 037642           16 ETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFE   67 (74)
Q Consensus        16 E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~~   67 (74)
                      -+.||++|++.+...++ +...+.+||.+.|..+...+.+..++. .+.+++
T Consensus       204 ~~l~v~~G~v~v~g~~~-~~~~l~~gd~~~l~~~~~l~l~a~~~a-~~LL~d  253 (256)
T 2vec_A          204 AYLQSIHGKFHALTHHE-EKAALTCGDGAFIRDEANITLVADSPL-RALLID  253 (256)
T ss_dssp             EEEEEEESCEEEEETTE-EEEEECTTCEEEEESCSEEEEEESSSE-EEEEEE
T ss_pred             EEEEEEECEEEECCccc-cceEECCCCEEEECCCCeEEEEeCCCC-EEEEEE
Confidence            78899999999875444 357899999999998888888776665 344444

>1ep0_A DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; racemase, DTDP-4-dehydrorhamnose epimerase, structural genomics, PSI; 1.50A {Methanothermobacterthermautotrophicus} SCOP: b.82.1.1 PDB: 1epz_A*

Probab=94.69  E-value=0.48  Score=30.34  Aligned_cols=60  Identities=13%  Similarity=0.143  Sum_probs=42.6

Q ss_pred             EEEe--cCceEEEEEEecEEE-EEeCCCc--------eEEEECC--CcEEEEcCCCeEEEEEeee-EEEEEEEe
Q 037642            8 FQLK--FDAEETCYLLKGKVK-VYPKGSS--------DWVEFGA--GDLVTIPKGLSCTWDVSVA-VDKYYKFE   67 (74)
Q Consensus         8 ~~~~--~~~~E~~~vleG~~~-~~~~~g~--------e~~~~~~--GD~v~~p~g~~~~~~~~~~-~~k~y~~~   67 (74)
                      +++|  ....+++.|++|++. +.++...        ..+.|.+  +..++||+|..|.+.+.+. ..-.|.++
T Consensus        63 lH~q~p~~q~klv~vv~G~v~dV~VD~R~~SpTfg~~~~~~Ls~~n~~~L~IP~G~aHgf~~lsd~a~~~y~~s  136 (185)
T 1ep0_A           63 LHFQREKPQGKLVRVIRGEIFDVAVDLRKNSDTYGEWTGVRLSDENRREFFIPEGFAHGFLALSDECIVNYKCT  136 (185)
T ss_dssp             EEEESSSCCCEEEEEEESEEEEEEEECCTTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSEEEEEEEES
T ss_pred             ceecCCccccEEEEEeCCeEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCCeEEEEEEcCCCeEEEEecC
Confidence            4677  678999999999964 3333221        3355655  6899999999999998876 44455543

>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*

Probab=94.67  E-value=0.081  Score=32.76  Aligned_cols=62  Identities=15%  Similarity=0.313  Sum_probs=41.2

Q ss_pred             CCceEEEec--CceEEEEEEecEEEEEeCCCceEEEECCCcEEEE-----cCCCeEEEEEeeeEEEEEEEe
Q 037642            4 SPGKFQLKF--DAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTI-----PKGLSCTWDVSVAVDKYYKFE   67 (74)
Q Consensus         4 ~pg~~~~~~--~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~-----p~g~~~~~~~~~~~~k~y~~~   67 (74)
                      .||..-+..  ..+.+++|++|.+.+..++|. ...+.+||++-.     ..-...+..+.+++ .+|.+.
T Consensus       101 ~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~g~-~~~l~~G~~fGe~~~~~~~~~~~~v~a~~~~-~l~~i~  169 (202)
T 3bpz_A          101 QPGDYIIREGTIGKKMYFIQHGVVSVLTKGNK-EMKLSDGSYFGEICLLTRGRRTASVRADTYC-RLYSLS  169 (202)
T ss_dssp             CTTCEEECTTSBCCEEEEEEECEEEEECTTSC-CEEEETTCEECHHHHHHCSBCSSEEEESSCE-EEEEEE
T ss_pred             CCCCEEEECCCcCCeEEEEeccEEEEEECCCe-EEEEcCCCEeccHHHhcCCCcccEEEEeeEE-EEEEEE
Confidence            456554443  257899999999999988874 578999998732     11224455555555 555554

>2vec_A YHAK, pirin-like protein YHAK; ROS, bicupin, sulfenic acid, reactive cysteine, cytosolic protein; 1.85A {Escherichia coli}

Probab=94.60  E-value=0.096  Score=35.20  Aligned_cols=45  Identities=16%  Similarity=0.220  Sum_probs=36.2

Q ss_pred             eEEEe--cCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeE
Q 037642            7 KFQLK--FDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSC   52 (74)
Q Consensus         7 ~~~~~--~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~   52 (74)
                      .|..|  .+.+.+-|||+|.++-.+.-|+ ...++|||+-.+.+|.-.
T Consensus        76 gf~~HPHrg~EtvTyvl~G~~~H~DS~Gn-~~~i~~GdvQ~MtAG~GI  122 (256)
T 2vec_A           76 AFQPRTYPKVDILNVILDGEAEYRDSEGN-HVQASAGEALLLSTQPGV  122 (256)
T ss_dssp             EEEEECCSSEEEEEEEEESEEEEEETTSC-EEEEETTEEEEECCCTTC
T ss_pred             ccCCcCCCCcEEEEEEEeeEEEEEeCCCC-EEEECCCeEEEEECCCCe
Confidence            36554  4456688999999999999884 699999999999887643

>3eqe_A Putative cystein deoxygenase; YUBC, SR112, NESG, structural genomics, PSI-2, protein structure initiative; 2.82A {Bacillus subtilis}

Probab=94.50  E-value=0.32  Score=30.73  Aligned_cols=55  Identities=18%  Similarity=0.144  Sum_probs=39.5

Q ss_pred             CCceE---EEecCceEEEEEEecEEEEEe---CCCc----eEEEECCCcEEEEcCCCeEEEEEee
Q 037642            4 SPGKF---QLKFDAEETCYLLKGKVKVYP---KGSS----DWVEFGAGDLVTIPKGLSCTWDVSV   58 (74)
Q Consensus         4 ~pg~~---~~~~~~~E~~~vleG~~~~~~---~~g~----e~~~~~~GD~v~~p~g~~~~~~~~~   58 (74)
                      .||..   +-|.....++.||+|+.+.+.   +++.    ....+.+||.+++|++.-|+.....
T Consensus        77 ~PGq~S~iHdH~~s~~~~~VL~G~l~e~~y~~~~~~~~~~~~~~l~~G~~~~~~~~~iH~V~N~~  141 (171)
T 3eqe_A           77 PPNKETTVHDHGQSIGCAMVLEGKLLNSIYRSTGEHAELSNSYFVHEGECLISTKGLIHKMSNPT  141 (171)
T ss_dssp             CTTCBCCEECCTTCEEEEEEEESEEEEEEEEECSSSEEEEEEEEEETTCEEEECTTCEEEEECCS
T ss_pred             CCCCCcccccCCCceEEEEEEeeeEEEEEeecCCCceeecceEEeCCCcEEEeCCCCEEEEECCC
Confidence            46654   223345788889999999764   3321    2478999999999999999987644

>2ixk_A DTDP-4-dehydrorhamnose 3,5-epimerase; isomerase, lipopolysaccharide biosynthesis, epimerise, epimerize; HET: TDO; 1.7A {Pseudomonas aeruginosa} PDB: 2ixi_A* 2ixh_A* 1rtv_A* 2ixj_A*

Probab=94.42  E-value=0.57  Score=29.98  Aligned_cols=60  Identities=17%  Similarity=0.094  Sum_probs=42.5

Q ss_pred             EEEe--cCceEEEEEEecEEE-EEeCCCc--------eEEEECC--CcEEEEcCCCeEEEEEeee-EEEEEEEe
Q 037642            8 FQLK--FDAEETCYLLKGKVK-VYPKGSS--------DWVEFGA--GDLVTIPKGLSCTWDVSVA-VDKYYKFE   67 (74)
Q Consensus         8 ~~~~--~~~~E~~~vleG~~~-~~~~~g~--------e~~~~~~--GD~v~~p~g~~~~~~~~~~-~~k~y~~~   67 (74)
                      +++|  .....++.|++|++. +.+|...        ..+.|.+  +..++||+|..|.+.+.+. ..-.|.++
T Consensus        64 ~H~q~p~~q~Klv~vv~G~v~dV~vD~R~~SpTfg~~~~~~Ls~~n~~~L~IP~G~aHgf~~lsd~a~~~y~~s  137 (184)
T 2ixk_A           64 LHYQIRQAQGKLVRATLGEVFDVAVDLRRGSPTFGQWVGERLSAENKRQMWIPAGFAHGFVVLSEYAEFLYKTT  137 (184)
T ss_dssp             EEEESSSCCCEEEEEEESEEEEEEEECBTTSTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSEEEEEEEES
T ss_pred             EEeCCCCCcCEEEEEeCCeEEEEEEECCCCCCCCCeEEEEEeCCCcCCEEEeCCCeEEEEEEcCCCEEEEEeCC
Confidence            4666  668999999999963 4443321        3355555  6899999999999998876 44455544

>3d8c_A Hypoxia-inducible factor 1 alpha inhibitor; FIH, HIF, DSBH, oxygenase, transcription, inhibitor oxoglutarate, asparaginyl hydroxylase; HET: AKG; 2.10A {Homo sapiens} PDB: 2ilm_A* 2w0x_A* 1h2l_A* 1h2m_A* 1h2n_A* 1yci_A* 2cgn_A 2cgo_A* 1h2k_A* 2wa3_A* 2wa4_A* 3od4_A* 3p3n_A* 3p3p_A* 2yc0_A* 2y0i_A* 2yde_A* 1mze_A* 1mzf_A* 2xum_A* ...

Probab=94.36  E-value=0.17  Score=35.00  Aligned_cols=36  Identities=14%  Similarity=0.194  Sum_probs=27.9

Q ss_pred             eEEEECCCcEEEEcCCCeEEEEEee----eEEEEEEEecC
Q 037642           34 DWVEFGAGDLVTIPKGLSCTWDVSV----AVDKYYKFEST   69 (74)
Q Consensus        34 e~~~~~~GD~v~~p~g~~~~~~~~~----~~~k~y~~~~~   69 (74)
                      -...++|||+++||+|+.|.-...+    .+--.|.+...
T Consensus       261 ~~~~l~pGD~LyiP~gWwH~V~~l~d~~~sisvn~w~~~~  300 (349)
T 3d8c_A          261 YETVVGPGDVLYIPMYWWHHIESLLNGGITITVNFWYKGA  300 (349)
T ss_dssp             EEEEECTTCEEEECTTCEEEEEECTTSCCEEEEEEEEECC
T ss_pred             EEEEECCCCEEEECCCCcEEEEEcCCCCcEEEEEEEcCCC
Confidence            3578999999999999999998875    35555555443

>1dgw_Y Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_Y

Probab=94.35  E-value=0.086  Score=30.58  Aligned_cols=32  Identities=13%  Similarity=0.226  Sum_probs=25.5

Q ss_pred             EEECCCcEEEEcCCCeEEEEEeeeEEEEEEEecC
Q 037642           36 VEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFEST   69 (74)
Q Consensus        36 ~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~~~~   69 (74)
                      -+|++||+++||+|+...-.....  -.|+...+
T Consensus         8 ~~l~~G~v~vVPq~~~v~~~A~~~--le~v~F~t   39 (93)
T 1dgw_Y            8 ATLSEGDIIVIPSSFPVALKAASD--LNMVGIGV   39 (93)
T ss_dssp             EEECTTCEEEECTTCCEEEEESSS--EEEEEEEE
T ss_pred             ceecCCcEEEECCCCceeEEecCC--eEEEEEEe
Confidence            579999999999999999998875  45554433

>1yll_A PA5104, conserved hypothetical protein; structural genomics, beta-BA PSI, protein structure initiative, midwest center for struc genomics; 1.64A {Pseudomonas aeruginosa} SCOP: b.82.1.17

Probab=94.22  E-value=0.21  Score=32.47  Aligned_cols=51  Identities=8%  Similarity=-0.029  Sum_probs=36.7

Q ss_pred             ceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeE---EEEEeeeEEEEEEE
Q 037642           14 AEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSC---TWDVSVAVDKYYKF   66 (74)
Q Consensus        14 ~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~---~~~~~~~~~k~y~~   66 (74)
                      ..-++|+++|...+..+++ +...+.+||++.+-.....   ........ ..+++
T Consensus       140 ~~~~v~~l~G~~~v~~~~~-~~~~L~~~d~l~~~~~~~~~~~~~~~~g~~-~~~~i  193 (200)
T 1yll_A          140 STLLLFAQQDGVAISLQGQ-PRGQLAAHDCLCAEGLQGLQHWRLTAHEPA-WVCAV  193 (200)
T ss_dssp             SEEEEEESSSCEEEEETTE-EEEEECTTCEEEEESCCSCEEEEEEEEEEE-EEEEE
T ss_pred             CEEEEEEccCcEEEEcCCC-ceeecCCCCEEEEeCCCccceeEeccCCce-EEEEE
Confidence            4578899999999988765 5799999999999665533   44444443 34443

>1tq5_A Protein YHHW; bicupin, pirin, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics, unknown function; 1.76A {Escherichia coli} SCOP: b.82.1.12

Probab=94.17  E-value=0.24  Score=32.89  Aligned_cols=48  Identities=21%  Similarity=0.256  Sum_probs=39.6

Q ss_pred             eEEE--ecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEE
Q 037642            7 KFQL--KFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWD   55 (74)
Q Consensus         7 ~~~~--~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~   55 (74)
                      .|..  |.+.+.+-|||+|.+.-.+.-|+ ...++|||+-.+-+|.-....
T Consensus        53 gf~~HPHrg~EtvTyvl~G~~~H~DS~Gn-~~~i~~GdvQ~MtAG~GI~Hs  102 (242)
T 1tq5_A           53 GFGTHPHKDMEILTYVLEGTVEHQDSMGN-KEQVPAGEFQIMSAGTGIRHS  102 (242)
T ss_dssp             EEEEEEECSCEEEEEEEESEEEEEESSSC-EEEEETTCEEEEECTTCEEEE
T ss_pred             cCCCcCCCCcEEEEEEEEeEEEEEeCCCC-cEEECCCcEEEEECCCCcEEE
Confidence            3544  45677899999999999999874 699999999999888776665

>3esg_A HUTD, putative uncharacterized protein; beta barrel, unknown function; 1.80A {Pseudomonas fluorescens} SCOP: b.82.1.0

Probab=94.15  E-value=0.37  Score=31.31  Aligned_cols=64  Identities=8%  Similarity=0.053  Sum_probs=50.0

Q ss_pred             ceEEEecCceEEEEEEecE-EEEEeCCCceEEEECCCcEEEEcCCCeEEEEEe-eeEEEEEEEecCC
Q 037642            6 GKFQLKFDAEETCYLLKGK-VKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVS-VAVDKYYKFESTS   70 (74)
Q Consensus         6 g~~~~~~~~~E~~~vleG~-~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~-~~~~k~y~~~~~~   70 (74)
                      |.|..-...+-+..+|+|. +.+..++. ....+.|++.+.|+.+....-+.. ++++.+=++.+.+
T Consensus        58 g~FS~FpG~dR~l~lL~G~gl~L~~~g~-~~~~L~~~~p~~F~G~~~v~a~L~~G~v~DfNlM~rr~  123 (193)
T 3esg_A           58 GGFSSFAGYQRVITVIQGAGMVLTVDGE-EQRGLLPLQPFAFRGDSQVSCRLITGPIRDFNLIYSPE  123 (193)
T ss_dssp             EECCCCTTCEEEEEEEESSCEEEEETTS-CCEEECBTCCEEEETTSCEEEEESSSCEEEEEEEECTT
T ss_pred             CCCCCCCCceEEEEEEcCCcEEEEeCCC-ccEecCCCCCEEeCCCCeEEEEECCCCEEEEEEEEcCC
Confidence            4444334578999999997 99999875 468899999999999999988865 5777776666553

>2yu1_A JMJC domain-containing histone demethylation PROT; JMJC-domain-containing histone demethylases, oxidoreductase; HET: AKG; 2.70A {Homo sapiens} PDB: 2yu2_A

Probab=94.11  E-value=0.22  Score=36.05  Aligned_cols=58  Identities=14%  Similarity=0.157  Sum_probs=42.1

Q ss_pred             cCCceE-EEecCc---eEEEEEEecEEEEEe-----------------------------CCCceEEEECCCcEEEEcCC
Q 037642            3 CSPGKF-QLKFDA---EETCYLLKGKVKVYP-----------------------------KGSSDWVEFGAGDLVTIPKG   49 (74)
Q Consensus         3 ~~pg~~-~~~~~~---~E~~~vleG~~~~~~-----------------------------~~g~e~~~~~~GD~v~~p~g   49 (74)
                      ..+|++ .+|+|.   .-+..++.|+=...+                             +.. -...++|||+++||.|
T Consensus       203 Gp~gS~T~~H~D~~~ts~w~avi~GrK~w~L~PP~~~~~~~y~~~~~s~~q~~~~~p~~~~~~-~~v~l~pGE~LfIPsG  281 (451)
T 2yu1_A          203 SVRGCYTDFHVDFGGTSVWYHIHQGGKVFWLIPPTAHNLELYENWLLSGSQGDIFLGDRVSDC-QRIELKQGYTFVIPSG  281 (451)
T ss_dssp             ECTTCEEEEECCGGGCEEEEEEEESCEEEEEECCCHHHHHHHHHHHHTTCCSSSCHHHHSSCC-EEEEECTTCEEEECTT
T ss_pred             ccCCCCCCeEECCCCcchhhheecceEEEEEeCCCcccccccccccccccchhhhhccccccc-eEEEECCCcEEEeCCC
Confidence            345665 567765   357888999876552                             123 4688999999999999


Q ss_pred             CeEEEEEeeeEE
Q 037642           50 LSCTWDVSVAVD   61 (74)
Q Consensus        50 ~~~~~~~~~~~~   61 (74)
                      +-|.-...+...
T Consensus       282 WwH~V~nledsI  293 (451)
T 2yu1_A          282 WIHAVYTPTDTL  293 (451)
T ss_dssp             CEEEEECSSCEE
T ss_pred             ceEEEecCCCeE
Confidence            999988776543

>1nxm_A DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; jelly roll-like structure, beta sheet, isomerase; 1.30A {Streptococcus suis} SCOP: b.82.1.1 PDB: 1nyw_A* 1nzc_A* 2ixl_A*

Probab=94.04  E-value=0.51  Score=30.63  Aligned_cols=59  Identities=15%  Similarity=0.210  Sum_probs=44.1

Q ss_pred             EEEecCceEEEEEEe-cEE-EEEeCCC-------ceEEEECCCcEEEEcCCCeEEEEEeee-EEEEEEEe
Q 037642            8 FQLKFDAEETCYLLK-GKV-KVYPKGS-------SDWVEFGAGDLVTIPKGLSCTWDVSVA-VDKYYKFE   67 (74)
Q Consensus         8 ~~~~~~~~E~~~vle-G~~-~~~~~~g-------~e~~~~~~GD~v~~p~g~~~~~~~~~~-~~k~y~~~   67 (74)
                      +++| ....++.|++ |++ .+.+|..       -..+.|.++-.++||+|..|.+.+.+. ..-.|+++
T Consensus        75 lH~h-~q~Klv~~~~~G~v~dV~VDlR~SpTfg~~~~v~Ls~~~~L~IP~G~aHgf~~lsd~a~~~y~~s  143 (197)
T 1nxm_A           75 LHAE-PWDKYISVADGGKVLGTWVDLREGETFGNTYQTVIDASKSIFVPRGVANGFQVLSDFVAYSYLVN  143 (197)
T ss_dssp             EEEC-SSCEEEEECSSCCEEEEEEECBSSTTTTCEEEEEECTTEEEEECTTEEEEEEECSSEEEEEEEES
T ss_pred             eeec-ccceEEEEcCCCEEEEEEEECCCCCCCCeEEEEEeCCCcEEEeCCCeEEEEEeccCCeEEEEECC
Confidence            3454 6889999999 994 5555542       245788899999999999999998876 44555544

>1yud_A Hypothetical protein SO0799; SOR12, Q8E1N8, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Shewanella oneidensis} SCOP: b.82.1.16

Probab=93.90  E-value=0.73  Score=29.33  Aligned_cols=45  Identities=22%  Similarity=0.432  Sum_probs=34.0

Q ss_pred             cCceEEEEEEecEE-EEEe--CCCceEEE------ECCCcE--EEEcCCCeEEEEEe
Q 037642           12 FDAEETCYLLKGKV-KVYP--KGSSDWVE------FGAGDL--VTIPKGLSCTWDVS   57 (74)
Q Consensus        12 ~~~~E~~~vleG~~-~~~~--~~g~e~~~------~~~GD~--v~~p~g~~~~~~~~   57 (74)
                      .+.+|+.+..+|.. ++.+  ++| ....      +.+|+.  +++|+|.....+..
T Consensus        67 v~sdEiW~~~~G~pL~l~l~~~dg-~~~~~~LG~dv~~Ge~pQ~vVP~G~wqaa~~~  122 (170)
T 1yud_A           67 LTADEMWYFHAGQSLTIYMISPEG-ELTTAQLGLDLAAGERPQFLVPKGCIFGSAMN  122 (170)
T ss_dssp             CSSCEEEEEEEESCEEEEEECTTS-CEEEEEESSCTTTTEESCEEECTTCEEEEEES
T ss_pred             cCCCEEEEEEcCCCEEEEEEcCCC-CEEEEEeCCCcccCceeEEEECCCCEEEEEEC
Confidence            35899999999985 5554  344 2344      677999  99999999888765

>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}

Probab=93.77  E-value=0.11  Score=29.87  Aligned_cols=39  Identities=15%  Similarity=0.184  Sum_probs=29.7

Q ss_pred             CceEEEecC--ceEEEEEEecEEEEEeCCCceEEEECCCcEE
Q 037642            5 PGKFQLKFD--AEETCYLLKGKVKVYPKGSSDWVEFGAGDLV   44 (74)
Q Consensus         5 pg~~~~~~~--~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v   44 (74)
                      +|..-+..+  .+.+++|++|.+.+...+|. ...+.+||++
T Consensus        47 ~g~~i~~~g~~~~~~y~i~~G~v~~~~~~g~-~~~l~~G~~f   87 (134)
T 2d93_A           47 AGAIILEDGQELDSWYVILNGTVEISHPDGK-VENLFMGNSF   87 (134)
T ss_dssp             SSCEEECTTCEECEEEECCBSCEEEECSSSC-EEEECTTCEE
T ss_pred             CCCEEEeCCCCCCeEEEEEeCEEEEEcCCCc-EEEecCCCcc
Confidence            454444432  47899999999999987774 4889999987

>3bb6_A Uncharacterized protein YEAR; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Escherichia coli} SCOP: b.82.2.13

Probab=93.73  E-value=0.37  Score=29.44  Aligned_cols=48  Identities=13%  Similarity=0.140  Sum_probs=37.6

Q ss_pred             CceEEEEEEecEEEEEe--CCC----ceEEEECCCcEEEEcCCCeEEEEE-eeeE
Q 037642           13 DAEETCYLLKGKVKVYP--KGS----SDWVEFGAGDLVTIPKGLSCTWDV-SVAV   60 (74)
Q Consensus        13 ~~~E~~~vleG~~~~~~--~~g----~e~~~~~~GD~v~~p~g~~~~~~~-~~~~   60 (74)
                      ...+...||+|++.+..  ++|    .+.....+|+..+||++..++-+. ++++
T Consensus        38 Gtwg~l~VL~G~L~f~~~~e~g~~~~~~~~l~~~~~~~~i~Pq~wH~Ve~lsdd~   92 (127)
T 3bb6_A           38 GVYPRLSVMHGAVKYLGYADEHSAEPDQVILIEAGQFAVFPPEKWHNIEAMTDDT   92 (127)
T ss_dssp             TEEEEEEEEESEEEEEEESSTTCSSCSEEEEEEBTBEEECCSSCEEEEEESSTTC
T ss_pred             CEEEEEEEEEeEEEEEEECCCCCcceeEEEEeCCCCceEECCCCcEEEEEcCCCE
Confidence            35789999999998873  322    245678899999999999999997 4444

>2xdv_A MYC-induced nuclear antigen; ribosome biogenesis, nuclear protein; HET: OGA; 2.57A {Homo sapiens}

Probab=93.69  E-value=0.19  Score=36.13  Aligned_cols=50  Identities=20%  Similarity=0.213  Sum_probs=37.1

Q ss_pred             EEecC-ceEEEEEEecEEEEEeCCC-------------------ceEEEECCCcEEEEcCCCeEEEEEee
Q 037642            9 QLKFD-AEETCYLLKGKVKVYPKGS-------------------SDWVEFGAGDLVTIPKGLSCTWDVSV   58 (74)
Q Consensus         9 ~~~~~-~~E~~~vleG~~~~~~~~g-------------------~e~~~~~~GD~v~~p~g~~~~~~~~~   58 (74)
                      ..|+| .+-+..-++|+=+.++-..                   .....++|||+++||+|+.|.-+..+
T Consensus       154 ~~H~D~~dvf~~Qv~G~Krw~l~~p~~pl~~~~s~d~~~~~~~~~~~~~L~pGD~LYiP~g~~H~~~s~~  223 (442)
T 2xdv_A          154 PPHYDDVEVFILQLEGEKHWRLYHPTVPLAREYSVEAEERIGRPVHEFMLKPGDLLYFPRGTIHQADTPA  223 (442)
T ss_dssp             CSEECSSEEEEEEEESCEEEEEECCSSTTCSSCEECCTTTSCSCSEEEEECTTCEEEECTTCEEEEECCS
T ss_pred             cceECCcceEEEEEEeEEEEEEccCCCCccccCCCCchhhcCCcceEEEECCCcEEEECCCceEEEEecC
Confidence            35665 4667778889877774110                   12578999999999999999988764

>1wlt_A 176AA long hypothetical DTDP-4-dehydrorhamnose 3, 5-epimerase; jelly roll-like topology, flattened barrel, isomerase; 1.90A {Sulfolobus tokodaii} SCOP: b.82.1.1 PDB: 2b9u_A

Probab=93.67  E-value=0.88  Score=29.48  Aligned_cols=60  Identities=13%  Similarity=0.221  Sum_probs=42.2

Q ss_pred             EEEecC---ceEEEEEEecEE-EEEeCCCc--------eEEEECC--CcEEEEcCCCeEEEEEeee-EEEEEEEe
Q 037642            8 FQLKFD---AEETCYLLKGKV-KVYPKGSS--------DWVEFGA--GDLVTIPKGLSCTWDVSVA-VDKYYKFE   67 (74)
Q Consensus         8 ~~~~~~---~~E~~~vleG~~-~~~~~~g~--------e~~~~~~--GD~v~~p~g~~~~~~~~~~-~~k~y~~~   67 (74)
                      ++++..   ...++.|++|++ .+.+|...        ..+.|.+  +..++||+|..+.+.+.+. ..-.|.++
T Consensus        80 lH~q~~p~~q~Klv~vv~G~v~dV~VDlR~~SpTfG~~~~v~Ls~en~~~L~IP~G~aHgf~~lsd~a~~ly~~s  154 (196)
T 1wlt_A           80 LHYQRTPKEQGKIIFVPKGRILDVAVDVRKSSPTFGKYVKAELNEENHYMLWIPPGFAHGFQALEDSIVIYFITH  154 (196)
T ss_dssp             EEEECTTSCCEEEEEEEESEEEEEEEECBTTSTTTTCEEEEEEETTTCCEEEECTTEEEEEEESSSEEEEEEEES
T ss_pred             EEccCCCCCCceEEEEeCCEEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCCeEEEEEEcCCCeEEEEEeC
Confidence            455654   789999999999 44443321        3356664  7899999999999998876 33445543

>3al5_A HTYW5, JMJC domain-containing protein C2ORF60; tRNA modification enzyme, unknown function; 2.50A {Homo sapiens} PDB: 3al6_A*

Probab=93.58  E-value=0.13  Score=35.40  Aligned_cols=27  Identities=19%  Similarity=-0.032  Sum_probs=23.1

Q ss_pred             eEEEECCCcEEEEcCCCeEEEEEeeeE
Q 037642           34 DWVEFGAGDLVTIPKGLSCTWDVSVAV   60 (74)
Q Consensus        34 e~~~~~~GD~v~~p~g~~~~~~~~~~~   60 (74)
                      ....++|||+++||+|+.|.-...+..
T Consensus       240 ~~~~L~pGD~LyiP~gWwH~v~~l~~s  266 (338)
T 3al5_A          240 YECSLEAGDVLFIPALWFHNVISEEFG  266 (338)
T ss_dssp             EEEEECTTCEEEECTTCEEEEEESSCE
T ss_pred             EEEEECCCCEEEECCCCeEEEeeCCCE
Confidence            357899999999999999998877653

>3ryk_A DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pathway, STRU genomics, infectious diseases; HET: TYD; 1.63A {Bacillus anthracis str}

Probab=93.55  E-value=0.96  Score=29.53  Aligned_cols=61  Identities=16%  Similarity=0.238  Sum_probs=42.5

Q ss_pred             EEEec---CceEEEEEEecEEE-EE--eCCCc------eEEEECC--CcEEEEcCCCeEEEEEeee-EEEEEEEec
Q 037642            8 FQLKF---DAEETCYLLKGKVK-VY--PKGSS------DWVEFGA--GDLVTIPKGLSCTWDVSVA-VDKYYKFES   68 (74)
Q Consensus         8 ~~~~~---~~~E~~~vleG~~~-~~--~~~g~------e~~~~~~--GD~v~~p~g~~~~~~~~~~-~~k~y~~~~   68 (74)
                      ++++.   ...+++.|++|++. +.  +..++      ..+.|.+  +-.++||+|..|-+.+.++ ..-.|.++.
T Consensus        85 lH~q~~p~~q~KlV~vv~G~v~DV~VDlR~~SpTfg~~~~~~Ls~~n~~~L~IP~G~aHGF~~Lsd~a~~~Y~~s~  160 (205)
T 3ryk_A           85 LHFQKNPKAQTKLIQVMQGAIYDVIVDLRKDSPTFKQWRGYILSADNHRQLLVPKGFAHGFCTLVPHTIVMYKVDE  160 (205)
T ss_dssp             EEEECTTSCCCEEEEEEESEEEEEEEECCTTSTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSSEEEEEEESS
T ss_pred             eEecCCCCCceEEEEEeCCeEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCCceEEEEEcCCCEEEEEEcCC
Confidence            35554   47999999999963 33  32232      3456765  7999999999999998775 445566543

>2gm6_A Cysteine dioxygenase type I; structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2, oxidoreductase; 1.84A {Ralstonia eutropha} SCOP: b.82.1.19

Probab=93.54  E-value=0.61  Score=30.20  Aligned_cols=52  Identities=13%  Similarity=0.118  Sum_probs=37.6

Q ss_pred             CCceE---EEecCceEEEEEEecEEEEEe----CCCc-----eEEEECCCcEEEEcC--CCeEEEEE
Q 037642            4 SPGKF---QLKFDAEETCYLLKGKVKVYP----KGSS-----DWVEFGAGDLVTIPK--GLSCTWDV   56 (74)
Q Consensus         4 ~pg~~---~~~~~~~E~~~vleG~~~~~~----~~g~-----e~~~~~~GD~v~~p~--g~~~~~~~   56 (74)
                      .||..   +-|. ...++.||+|..+.+.    ++|.     +...+.+||.+.|++  |.-|+-..
T Consensus        87 ~PGq~spiHdH~-~~~~~~VL~G~l~e~~y~~~~~g~~l~~~~~~~l~~G~v~~~~~~~g~iH~V~N  152 (208)
T 2gm6_A           87 GPGQRTPIHDHT-VWGLIGMLRGAEYSQPFVLDGSGRPVLHGEPTRLEPGHVEAVSPTVGDIHRVHN  152 (208)
T ss_dssp             CTTCBCCSBCCS-SCEEEEEEESCEEEEEEEECTTSCEEECSCCEEECTTCEEEEBTTTBCCEEEEE
T ss_pred             CCCcccCcccCC-cceEEEEecccEEEEEeecCCCCccccccceEEeCCCCEEEECCCCCCeEEecc
Confidence            46665   2233 4899999999997764    3221     257899999999999  87787763

>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}

Probab=93.46  E-value=0.27  Score=30.16  Aligned_cols=63  Identities=6%  Similarity=0.140  Sum_probs=41.3

Q ss_pred             CCceEEEec--CceEEEEEEecEEEEEeCCCceEEEECCCcEEEE-----cCCCeEEEEEeeeEEEEEEEe
Q 037642            4 SPGKFQLKF--DAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTI-----PKGLSCTWDVSVAVDKYYKFE   67 (74)
Q Consensus         4 ~pg~~~~~~--~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~-----p~g~~~~~~~~~~~~k~y~~~   67 (74)
                      .||..-+..  ..+.+++|++|.+.+...+|.....+.+||.+--     ..-...+..+.+++ .+|.+.
T Consensus       100 ~~ge~I~~~G~~~~~ly~I~~G~v~~~~~~g~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~-~l~~i~  169 (198)
T 2ptm_A          100 QPADYVIQEGTFGDRMFFIQQGIVDIIMSDGVIATSLSDGSYFGEICLLTRERRVASVKCETYC-TLFSLS  169 (198)
T ss_dssp             CTTCEEECTTSCCSEEEEEEECCEEEECTTSCEEEEECTTCEESCHHHHHSSCCSSEEEESSCE-EEEEEE
T ss_pred             CCCCEEEECCCcCcEEEEEEeCEEEEEecCCeEEEEecCCCEechHHHcCCCccceEEEEeeEE-EEEEEe
Confidence            456554443  3578999999999999766644568999998731     22234555566665 455554

>1tq5_A Protein YHHW; bicupin, pirin, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics, unknown function; 1.76A {Escherichia coli} SCOP: b.82.1.12

Probab=93.39  E-value=0.56  Score=31.08  Aligned_cols=48  Identities=17%  Similarity=0.202  Sum_probs=36.5

Q ss_pred             ceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEEEec
Q 037642           14 AEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFES   68 (74)
Q Consensus        14 ~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~~~   68 (74)
                      ..-+.||++|++.+  ++    ..+.+||++.|..+...+.+..++.+ +-++..
T Consensus       181 ~~~~~~v~~G~v~v--~g----~~l~~gd~~~~~~~~~l~l~a~~~a~-~Ll~~~  228 (242)
T 1tq5_A          181 RRVWIQVVKGNVTI--NG----VKASTSDGLAIWDEQAISIHADSDSE-VLLFDL  228 (242)
T ss_dssp             CEEEEEEEESEEEE--TT----EEEETTCEEEEESCSCEEEEESSSEE-EEEEEE
T ss_pred             cEEEEEEccCcEEE--CC----EEeCCCCEEEECCCCeEEEEeCCCCE-EEEEEC
Confidence            46789999999877  33    37999999999998888888766653 444443

>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*

Probab=93.05  E-value=0.35  Score=28.37  Aligned_cols=62  Identities=15%  Similarity=0.202  Sum_probs=41.0

Q ss_pred             CCceEEEec--CceEEEEEEecEEEEEeCCCceEEEECCCcEEEE-----cCCCeEEEEEeeeEEEEEEEe
Q 037642            4 SPGKFQLKF--DAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTI-----PKGLSCTWDVSVAVDKYYKFE   67 (74)
Q Consensus         4 ~pg~~~~~~--~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~-----p~g~~~~~~~~~~~~k~y~~~   67 (74)
                      .+|..-+..  ..+.+++|++|.+.+..++. ....+.+||++-.     ..-...+..+.+++ .++.+.
T Consensus        67 ~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~-~~~~~~~G~~fGe~~~~~~~~~~~~v~A~~~~-~~~~i~  135 (154)
T 3pna_A           67 IAGETVIQQGDEGDNFYVIDQGEMDVYVNNE-WATSVGEGGSFGELALIYGTPRAATVKAKTNV-KLWGID  135 (154)
T ss_dssp             CTTCEEECTTSCCCEEEEEEESCEEEEETTE-EEEEECTTCEECCHHHHHCCCCSSEEEESSCE-EEEEEE
T ss_pred             CCCCEEEeCCCCCCeEEEEEecEEEEEECCE-EEEEecCCCEeeehHhhcCCCcceEEEECcce-EEEEEe
Confidence            345444433  35889999999999999774 5677999998742     22234455666664 455554

>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*

Probab=93.04  E-value=0.37  Score=27.63  Aligned_cols=62  Identities=19%  Similarity=0.213  Sum_probs=40.7

Q ss_pred             CCceEEEec--CceEEEEEEecEEEEEeCCCceEEEECCCcEEEE-----cCCCeEEEEEeeeEEEEEEEe
Q 037642            4 SPGKFQLKF--DAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTI-----PKGLSCTWDVSVAVDKYYKFE   67 (74)
Q Consensus         4 ~pg~~~~~~--~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~-----p~g~~~~~~~~~~~~k~y~~~   67 (74)
                      .+|..-+..  ..+.+++|++|.+.+..++. ....+.+||++--     ..-...+..+.+++ .++.+.
T Consensus        52 ~~g~~i~~~g~~~~~~y~i~~G~v~~~~~g~-~~~~~~~G~~fGe~~~l~~~~~~~~~~a~~~~-~v~~i~  120 (139)
T 3ocp_A           52 GKDSCIIKEGDVGSLVYVMEDGKVEVTKEGV-KLCTMGPGKVFGELAILYNCTRTATVKTLVNV-KLWAID  120 (139)
T ss_dssp             CSSCEEECTTSCCCEEEEEEECCEEEEETTE-EEEEECTTCEESCHHHHHCCCCSSEEEESSCE-EEEEEE
T ss_pred             CCCCEEEeCCCcCCEEEEEEeCEEEEEECCE-EEEEeCCCCEeccHHHHCCCCcceEEEECcce-EEEEEc
Confidence            344444433  35889999999999988774 5678999998742     23344456666665 455544

>1vrb_A Putative asparaginyl hydroxylase; 2636534, structural genomi center for structural genomics, JCSG, protein structure INI PSI, oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.82.2.11

Probab=92.76  E-value=0.12  Score=35.80  Aligned_cols=23  Identities=22%  Similarity=0.437  Sum_probs=21.1

Q ss_pred             EEEECCCcEEEEcCCCeEEEEEe
Q 037642           35 WVEFGAGDLVTIPKGLSCTWDVS   57 (74)
Q Consensus        35 ~~~~~~GD~v~~p~g~~~~~~~~   57 (74)
                      ...++|||+++||+|+.|.-...
T Consensus       219 ~~~L~pGD~LyiP~gwwH~v~s~  241 (342)
T 1vrb_A          219 IVNLTPGTMLYLPRGLWHSTKSD  241 (342)
T ss_dssp             EEEECTTCEEEECTTCEEEEECS
T ss_pred             EEEECCCcEEEeCCCccEEEEEC
Confidence            57899999999999999998877

>2qdr_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE EPE; 2.60A {Nostoc punctiforme}

Probab=92.73  E-value=0.86  Score=31.41  Aligned_cols=47  Identities=17%  Similarity=0.386  Sum_probs=37.1

Q ss_pred             ceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCC-eEEEEE--eeeEEEEEEEe
Q 037642           14 AEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGL-SCTWDV--SVAVDKYYKFE   67 (74)
Q Consensus        14 ~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~-~~~~~~--~~~~~k~y~~~   67 (74)
                      ..| +|||.|.+.+  ++    ..+.+|.-.++|+|. ...|++  .+++.-+++-+
T Consensus       112 d~E-~fVL~G~i~~--G~----~~l~~h~Y~f~PaGV~~~~~kv~~~~g~~iL~fe~  161 (303)
T 2qdr_A          112 DLE-IFVIKGAIQL--GE----WQLNKHSYSFIPAGVRIGSWKVLGGEEAEILWMEN  161 (303)
T ss_dssp             CEE-EEEEESEEEE--TT----EEECTTEEEEECTTCCBCCEEEETTSCEEEEEEEC
T ss_pred             ceE-EEEEEeEEEe--CC----EEecCCceEEecCCCccCceeecCCCCcEEEEEec
Confidence            456 8999998765  33    689999999999998 578898  77777777633

>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}

Probab=92.27  E-value=0.54  Score=27.32  Aligned_cols=62  Identities=13%  Similarity=0.247  Sum_probs=41.5

Q ss_pred             CCceEEEec--CceEEEEEEecEEEEEeCCCceEEEECCCcEEEEc-------CCCeEEEEEeeeEEEEEEEe
Q 037642            4 SPGKFQLKF--DAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIP-------KGLSCTWDVSVAVDKYYKFE   67 (74)
Q Consensus         4 ~pg~~~~~~--~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p-------~g~~~~~~~~~~~~k~y~~~   67 (74)
                      .+|..-+..  ..+.+++|++|.+.+...+. ....+.+||.+--.       .-...+..+.+++ .++.+.
T Consensus        56 ~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~-~~~~~~~G~~fG~~~~~~~~~~~~~~~~~a~~~~-~v~~i~  126 (160)
T 4f8a_A           56 APGDLIYHAGESVDSLCFVVSGSLEVIQDDE-VVAILGKGDVFGDVFWKEATLAQSCANVRALTYC-DLHVIK  126 (160)
T ss_dssp             CTTCEEECTTSBCCEEEEEEESEEEEEETTE-EEEEEETTCEEECCTTTCSSCCBCSSEEEESSCE-EEEEEE
T ss_pred             CCCCEEEeCCCCccEEEEEEeeEEEEEECCE-EEEEecCCCEeCcHHHhcCcccceEEEEEECCce-EEEEEc
Confidence            345444443  35899999999999998774 46789999998641       2344556666665 455544

>2p17_A Pirin-like protein; GK1651, structural genomics, south collaboratory for structural genomics, protein structure in secsg; 1.52A {Geobacillus kaustophilus}

Probab=92.09  E-value=1.7  Score=29.29  Aligned_cols=46  Identities=13%  Similarity=0.081  Sum_probs=33.7

Q ss_pred             cCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcC-C----CeEEEEEeeeEE
Q 037642           12 FDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPK-G----LSCTWDVSVAVD   61 (74)
Q Consensus        12 ~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~-g----~~~~~~~~~~~~   61 (74)
                      ....-+.||++|++.+  ++.  ...+.+||++.|.. +    ...+.+..++.+
T Consensus       186 ~~~~~~lyv~~G~v~v--~g~--~~~l~~~d~~~~~~~~~~~~~~l~l~a~~~a~  236 (277)
T 2p17_A          186 GHYNGFLYILEGSGVF--GAD--NIEGKAGQALFFSRHNRGEETELNVTAREKLR  236 (277)
T ss_dssp             TTCEEEEEEEESEEEE--TTT--TEEEETTEEEEECCCCTTCEEEEEEEESSSEE
T ss_pred             CCCEEEEEEEeCeEEE--CCC--ceEeCCCcEEEEcCCCCCccceEEEEeCCCcE
Confidence            3457899999999766  442  24799999999986 7    666666656643

>3k2o_A Bifunctional arginine demethylase and lysyl-hydro JMJD6; structural genomics consortium, SGC, chromatin regulator, developmental protein; 1.75A {Homo sapiens} PDB: 3ld8_A 3ldb_A*

Probab=92.09  E-value=0.27  Score=34.08  Aligned_cols=27  Identities=15%  Similarity=-0.050  Sum_probs=23.6

Q ss_pred             EEEECCCcEEEEcCCCeEEEEEeeeEE
Q 037642           35 WVEFGAGDLVTIPKGLSCTWDVSVAVD   61 (74)
Q Consensus        35 ~~~~~~GD~v~~p~g~~~~~~~~~~~~   61 (74)
                      ...++|||+++||+|+.|.-...+...
T Consensus       257 ~~~l~pGd~l~iP~gw~H~v~~~~~si  283 (336)
T 3k2o_A          257 EILQKPGETVFVPGGWWHVVLNLDTTI  283 (336)
T ss_dssp             EEEECTTCEEEECTTCEEEEEESSCEE
T ss_pred             EEEECCCCEEEeCCCCcEEEecCCCeE
Confidence            478999999999999999998887643

>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B

Probab=92.01  E-value=0.5  Score=29.21  Aligned_cols=63  Identities=14%  Similarity=0.275  Sum_probs=42.1

Q ss_pred             CCceEEEecC--ceEEEEEEecEEEEEeCCCceEEEECCCcEEEE----cC---CCeEEEEEeeeEEEEEEEec
Q 037642            4 SPGKFQLKFD--AEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTI----PK---GLSCTWDVSVAVDKYYKFES   68 (74)
Q Consensus         4 ~pg~~~~~~~--~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~----p~---g~~~~~~~~~~~~k~y~~~~   68 (74)
                      .||..-+..+  .+.+++|++|.+.+..++. ....+.+||.+--    ..   -...+....+++ .+|.+..
T Consensus       104 ~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~-~~~~l~~G~~fGe~~~~~~~~~~~~~~v~a~~~~-~l~~i~~  175 (212)
T 3ukn_A          104 APGEFLIRQGDALQAIYFVCSGSMEVLKDNT-VLAILGKGDLIGSDSLTKEQVIKTNANVKALTYC-DLQYISL  175 (212)
T ss_dssp             CTTCEEECTTSBCCEEEEEEECCEEEESSSC-EEEEECTTCEEECSCCSSSSCCBBCSEEEESSCE-EEEEEEH
T ss_pred             CCCCEEEECCCcccEEEEEEecEEEEEECCe-EEEEecCCCCcCcHHhccCCCCCcceEEEEcccE-EEEEEeH
Confidence            4666544432  5899999999999998774 5678999999852    22   233455556665 5555543

>3kmh_A D-lyxose isomerase; cupin beta-barrel, structural genomics, montreal-kingston BA structural genomics initiative, BSGI; 1.58A {Escherichia coli O157} PDB: 3mpb_A*

Probab=91.96  E-value=0.49  Score=31.93  Aligned_cols=40  Identities=15%  Similarity=0.332  Sum_probs=28.3

Q ss_pred             EEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeee
Q 037642           18 CYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVA   59 (74)
Q Consensus        18 ~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~   59 (74)
                      ...+.|.-.....+  ..+.|+||+.+.||+|..|.|...+.
T Consensus       158 ~V~~DG~~~~~~aG--~~i~L~PGESiTl~Pg~~H~F~ae~g  197 (246)
T 3kmh_A          158 TVVIDGCRQKHTAG--SQLRLSPGESICLPPGLYHSFWAEAG  197 (246)
T ss_dssp             EEEETTEEEEECTT--CEEEECTTCEEEECTTEEEEEEECTT
T ss_pred             EEecCCeEEEeCCC--CEEEECCCCeEecCCCCEEEEEecCC
Confidence            33334444333333  35789999999999999999998876

>1dzr_A DTDP-4-dehydrorhamnose 3\,5-epimerase; isomerase, 3\,5-hexulose epimerase; 2.17A {Salmonella typhimurium} SCOP: b.82.1.1 PDB: 1dzt_A*

Probab=91.90  E-value=1.6  Score=27.85  Aligned_cols=60  Identities=17%  Similarity=0.108  Sum_probs=42.0

Q ss_pred             EEEec---CceEEEEEEecEEE-EEeCCC--------ceEEEECC--CcEEEEcCCCeEEEEEeee-EEEEEEEe
Q 037642            8 FQLKF---DAEETCYLLKGKVK-VYPKGS--------SDWVEFGA--GDLVTIPKGLSCTWDVSVA-VDKYYKFE   67 (74)
Q Consensus         8 ~~~~~---~~~E~~~vleG~~~-~~~~~g--------~e~~~~~~--GD~v~~p~g~~~~~~~~~~-~~k~y~~~   67 (74)
                      +++|.   ....++.|++|++. +.+|..        -..+.|.+  +..++||+|..|.+.+.+. ..-.|.++
T Consensus        62 lH~q~~p~~q~Klv~vv~G~v~dV~VD~R~~SpTfg~~~~~~Ls~~n~~~L~IP~G~aHgf~~lsd~a~~~y~~s  136 (183)
T 1dzr_A           62 LHFQRGENAQGKLVRCAVGEVFDVAVDIRKESPTFGQWVGVNLSAENKRQLWIPEGFAHGFVTLSEYAEFLYKAT  136 (183)
T ss_dssp             EEEECGGGCCCEEEEEEESEEEEEEEECCTTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSEEEEEEEES
T ss_pred             eEccCCCCCCcEEEEEeCCeEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCCeEEEEEEcCCCeEEEEEcC
Confidence            45665   67999999999964 333332        13355655  6899999999999998876 44445543

>2c0z_A NOVW; isomerase, epimerase, antibiotic biosynthesis, RMLC-like cupin; 1.60A {Streptomyces sphaeroides} SCOP: b.82.1.1

Probab=91.61  E-value=1.9  Score=28.28  Aligned_cols=60  Identities=10%  Similarity=0.027  Sum_probs=41.5

Q ss_pred             EEEecC---ceEEEEEEecEEE-EEeCCC--------ceEEEECC--CcEEEEcCCCeEEEEEeee-EEEEEEEe
Q 037642            8 FQLKFD---AEETCYLLKGKVK-VYPKGS--------SDWVEFGA--GDLVTIPKGLSCTWDVSVA-VDKYYKFE   67 (74)
Q Consensus         8 ~~~~~~---~~E~~~vleG~~~-~~~~~g--------~e~~~~~~--GD~v~~p~g~~~~~~~~~~-~~k~y~~~   67 (74)
                      +++|..   ...++.|++|++. +.+|..        -..+.|.+  +..++||+|..|.+.+.+. ..-.|.++
T Consensus        70 lH~q~~p~~q~KlV~vv~G~v~dV~VDlR~~SpTfG~~~~v~Ls~~n~~~L~IP~G~aHgF~~Lsd~a~~ly~~s  144 (216)
T 2c0z_A           70 IHFVDVPPGQAKYVTCVRGAVFDVVVDLRVGSPTYGCWEGTRLDDVSRRAVYLSEGIGHGFCAISDEATLCYLSS  144 (216)
T ss_dssp             EEEECTTTCCCEEEEEEESEEEEEEEECCBTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSEEEEEEEES
T ss_pred             CEecCCCCCcceEEEEeCCeEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCCeeEEEEEcCCCeEEEEecC
Confidence            456654   7899999999964 443332        13356665  5799999999999998876 33445443

>1oi6_A PCZA361.16; epimerase, vancomycin group antibiotic, EVAD, isomerase; HET: TMP; 1.4A {Amycolatopsis orientalis} SCOP: b.82.1.1 PDB: 1ofn_A* 1wa4_A

Probab=91.25  E-value=2  Score=27.87  Aligned_cols=60  Identities=15%  Similarity=0.181  Sum_probs=42.8

Q ss_pred             EEEecC---ceEEEEEEecEE-EEEeCCCc--------eEEEECC--CcEEEEcCCCeEEEEEeee-EEEEEEEe
Q 037642            8 FQLKFD---AEETCYLLKGKV-KVYPKGSS--------DWVEFGA--GDLVTIPKGLSCTWDVSVA-VDKYYKFE   67 (74)
Q Consensus         8 ~~~~~~---~~E~~~vleG~~-~~~~~~g~--------e~~~~~~--GD~v~~p~g~~~~~~~~~~-~~k~y~~~   67 (74)
                      +++|..   ...++.|++|++ .+.+|...        ..+.|.+  +..++||+|..|.+.+.+. ..-.|.++
T Consensus        62 lH~q~~p~~q~Klv~vv~G~v~dV~VDlR~~SpTfG~~~~v~Ls~~n~~~L~IP~G~aHgf~~lsd~a~~~y~~s  136 (205)
T 1oi6_A           62 IHYTVTPPGTAKYVYCARGKAMDIVIDIRVGSPTFGQWDSVLMDQQDPRAVYLPVGVGHAFVALEDDTVMSYMLS  136 (205)
T ss_dssp             EEEECTTTCCCEEEEEEESCEEEEEECCCBTCTTTTCEEEEEECSSSCCEEEECTTCEEEEEECSTTEEEEEEES
T ss_pred             eeccCCCCCCceEEEEeCCEEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCCeeEEEEEccCCeEEEEecC
Confidence            456654   789999999996 44454431        3466666  5889999999999998775 44555544

>1dgw_X Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_X

Probab=91.23  E-value=0.29  Score=27.27  Aligned_cols=23  Identities=17%  Similarity=0.104  Sum_probs=19.5

Q ss_pred             EEecCceEEEEEEecEEEEEeCC
Q 037642            9 QLKFDAEETCYLLKGKVKVYPKG   31 (74)
Q Consensus         9 ~~~~~~~E~~~vleG~~~~~~~~   31 (74)
                      +||..+.|+.||++|++.+.+-+
T Consensus        52 H~hprA~ei~~V~~G~~~v~~V~   74 (79)
T 1dgw_X           52 HYNSRATVILVANEGRAEVELVG   74 (79)
T ss_dssp             EEESSCEEEEEEEESCEEEEEEE
T ss_pred             ccCCCCcEEEEEEeceEEEEEec
Confidence            67778999999999999887643

>3k3o_A PHF8, PHD finger protein 8; histone demethylase, chromatin modification, methylated H3K9, mental retardation, metal-BI phosphoprotein, zinc-finger; HET: AKG; 2.10A {Homo sapiens} PDB: 3k3n_A* 4do0_A* 2wwu_A*

Probab=90.95  E-value=0.41  Score=33.89  Aligned_cols=59  Identities=17%  Similarity=0.138  Sum_probs=42.4

Q ss_pred             cCCceE-EEecCc---eEEEEEEecEEEEEeC-----------------------------CCceEEEECCCcEEEEcCC
Q 037642            3 CSPGKF-QLKFDA---EETCYLLKGKVKVYPK-----------------------------GSSDWVEFGAGDLVTIPKG   49 (74)
Q Consensus         3 ~~pg~~-~~~~~~---~E~~~vleG~~~~~~~-----------------------------~g~e~~~~~~GD~v~~p~g   49 (74)
                      ..+|++ .+|.|.   .-+..++.|+=...+-                             .. -...++|||+++||.|
T Consensus       154 Gp~gS~T~~HiD~~gts~w~~vv~GrK~w~L~PPt~~nl~~y~~~~~s~~~~e~~~~~~~~~~-~ev~l~pGEtLfIPsG  232 (371)
T 3k3o_A          154 SVRDSYTDFHIDFGGTSVWYHVLKGEKIFYLIRPTNANLTLFECWSSSSNQNEMFFGDQVDKC-YKCSVKQGQTLFIPTG  232 (371)
T ss_dssp             ECTTEEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHTSTTGGGSCGGGTSSCC-EEEEEETTCEEEECTT
T ss_pred             cCCCCCCCeEECCCCCceeEEEeeeEEEEEEECCCccccccccccccCCccchhhcccccCce-EEEEECCCcEEEeCCC
Confidence            456666 567764   3467889998666531                             12 3578999999999999


Q ss_pred             CeEEEEEeeeEEE
Q 037642           50 LSCTWDVSVAVDK   62 (74)
Q Consensus        50 ~~~~~~~~~~~~k   62 (74)
                      +-|.-...+....
T Consensus       233 WwH~V~nledSIa  245 (371)
T 3k3o_A          233 WIHAVLTPVDCLA  245 (371)
T ss_dssp             CEEEEEEEEEEEE
T ss_pred             CeEEEecCCCeEE
Confidence            9998887776543

>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*

Probab=90.89  E-value=0.4  Score=34.94  Aligned_cols=60  Identities=13%  Similarity=0.088  Sum_probs=42.6

Q ss_pred             cCCceE-EEecCc---eEEEEEEecEEEEEeC-----------------------------CCceEEEECCCcEEEEcCC
Q 037642            3 CSPGKF-QLKFDA---EETCYLLKGKVKVYPK-----------------------------GSSDWVEFGAGDLVTIPKG   49 (74)
Q Consensus         3 ~~pg~~-~~~~~~---~E~~~vleG~~~~~~~-----------------------------~g~e~~~~~~GD~v~~p~g   49 (74)
                      ..+|++ .+|+|.   .-++.++.|+=.+.+-                             .. -...++|||+++||.|
T Consensus       273 G~~gS~T~~H~D~~~t~~w~~vv~G~K~w~L~PPt~~~~~~y~~~~~~~~~~~~~~~~~~~~~-~~~~l~pGe~lfIPsG  351 (488)
T 3kv5_D          273 GVQDSYTDFHIDFGGTSVWYHVLWGEKIFYLIKPTDENLARYESWSSSVTQSEVFFGDKVDKC-YKCVVKQGHTLFVPTG  351 (488)
T ss_dssp             ECTTCEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHTCSSGGGSCGGGSSSCC-EEEEEETTCEEEECTT
T ss_pred             cCCCCCCCeEECCCCCceeeeccCeeEEEEEeCCcccccccccccccCCccchhhhcccccce-EEEeeCCCCEEEeCCC
Confidence            345666 567764   3477888998666531                             11 2578999999999999


Q ss_pred             CeEEEEEeeeEEEE
Q 037642           50 LSCTWDVSVAVDKY   63 (74)
Q Consensus        50 ~~~~~~~~~~~~k~   63 (74)
                      +.|.-...+....+
T Consensus       352 WwH~V~nledsIai  365 (488)
T 3kv5_D          352 WIHAVLTSQDCMAF  365 (488)
T ss_dssp             CEEEEEEEEEEEEE
T ss_pred             ceEEeeCCCCeEEE
Confidence            99988877765443

>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}

Probab=90.85  E-value=0.37  Score=29.98  Aligned_cols=53  Identities=13%  Similarity=0.162  Sum_probs=36.4

Q ss_pred             CceEEEEEEecEEEEEeCCCceEEEECCCcEEE----E-cCCCeEEEEEeeeEEEEEEEe
Q 037642           13 DAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVT----I-PKGLSCTWDVSVAVDKYYKFE   67 (74)
Q Consensus        13 ~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~----~-p~g~~~~~~~~~~~~k~y~~~   67 (74)
                      ..+.+++|++|.+.+..++. ....+.+||.+-    + ..-...+....+++ .++.+.
T Consensus        47 ~~~~~y~i~~G~v~v~~~~~-~~~~~~~g~~fGe~~l~~~~~~~~tv~a~~~~-~~~~i~  104 (246)
T 3of1_A           47 QGDYFYVVEKGTVDFYVNDN-KVNSSGPGSSFGELALMYNSPRAATVVATSDC-LLWALD  104 (246)
T ss_dssp             CCCEEEEEEECCEEEESTTS-CCEEECTTCEECHHHHHHTCCCSSEEEESSCE-EEEEEE
T ss_pred             CCCEEEEEEeeEEEEEECCE-EEEecCCCCeeehhHHhcCCCCCcEEEECCCe-EEEEEE
Confidence            35899999999999998775 568899999884    1 22223455555554 444443

>3dl3_A Tellurite resistance protein B; X-RAY NESG VFR98 Q5E3X2_VIBF1, structural genomics, PSI-2, protein structure initiative; 2.30A {Vibrio fischeri ES114} SCOP: b.82.2.13

Probab=90.44  E-value=1.8  Score=26.02  Aligned_cols=49  Identities=18%  Similarity=0.163  Sum_probs=39.4

Q ss_pred             ceEEEEEEecEEEEEe--CCC----ceEEEECCCcEEEEcCCCeEEEEEeeeEEE
Q 037642           14 AEETCYLLKGKVKVYP--KGS----SDWVEFGAGDLVTIPKGLSCTWDVSVAVDK   62 (74)
Q Consensus        14 ~~E~~~vleG~~~~~~--~~g----~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k   62 (74)
                      .....-||+|++.+..  +++    .+...+.+|+..+||+...+.-+.+++++.
T Consensus        38 tWgkL~Vl~G~Lkf~~~~e~~~~~~~~~~~~~~~~~~~i~Pq~wHrVe~sdD~~f   92 (119)
T 3dl3_A           38 VFGQICVMEGVVTYYGFANSEATEPEIKVVINAGQFATSPPQYWHRIELSDDAQF   92 (119)
T ss_dssp             EEEEEEEEESEEEEEEESSTTCCSCSEEEEEETTEEEEECTTCEEEEEECTTCEE
T ss_pred             EEEEEEEEEeEEEEEEEcCCCCCcccEEEEeCCCCCceeCCCceEEEEECCCeEE
Confidence            4677889999999994  222    145788999999999999999998887643

>4diq_A Lysine-specific demethylase NO66; structural genomics, structural genomics consortium, SGC, HI demethylase, oxidoreductase; HET: PD2; 2.40A {Homo sapiens}

Probab=90.33  E-value=0.28  Score=35.99  Aligned_cols=55  Identities=20%  Similarity=0.274  Sum_probs=39.2

Q ss_pred             CCce--EEEecCc-eEEEEEEecEEEEEeCCC-----------------------ceEEEECCCcEEEEcCCCeEEEEEe
Q 037642            4 SPGK--FQLKFDA-EETCYLLKGKVKVYPKGS-----------------------SDWVEFGAGDLVTIPKGLSCTWDVS   57 (74)
Q Consensus         4 ~pg~--~~~~~~~-~E~~~vleG~~~~~~~~g-----------------------~e~~~~~~GD~v~~p~g~~~~~~~~   57 (74)
                      .+|.  +..|+|. +-++.=++|+=..++-..                       .....++|||+++||+|+.|.-...
T Consensus       172 p~Gs~g~~pH~D~~DvFllQv~G~KrWrL~~P~~~~~~lp~~~~~~~~~~~~~~p~~e~~L~pGDvLYiP~g~~H~~~s~  251 (489)
T 4diq_A          172 PPNSQGFAPHYDDIEAFVLQLEGRKLWRVYRPRAPTEELALTSSPNFSQDDLGEPVLQTVLEPGDLLYFPRGFIHQAECQ  251 (489)
T ss_dssp             CSSBCCSCCBCCSSEEEEEEEEECEEEEEECCSSGGGTTCSSCCCCCCGGGCCCCSEEEEECTTCEEEECTTCEEEEEBC
T ss_pred             CCCcccccCccCCcceEEEEEeeEEEEEEeCCCCccccCCCcccccCCcccccCcceEEEECCCCEEEECCCCceEEEec
Confidence            4453  3467764 666666788777665211                       0247899999999999999999987


Q ss_pred             e
Q 037642           58 V   58 (74)
Q Consensus        58 ~   58 (74)
                      +
T Consensus       252 ~  252 (489)
T 4diq_A          252 D  252 (489)
T ss_dssp             S
T ss_pred             C
Confidence            5

>2ypd_A Probable JMJC domain-containing histone demethyla PROT EIN 2C; oxidoreductase; 2.10A {Homo sapiens}

Probab=90.10  E-value=0.48  Score=33.91  Aligned_cols=29  Identities=14%  Similarity=0.012  Sum_probs=23.2

Q ss_pred             EEEECCCcEEEEcCCCeEEEEEeeeEEEE
Q 037642           35 WVEFGAGDLVTIPKGLSCTWDVSVAVDKY   63 (74)
Q Consensus        35 ~~~~~~GD~v~~p~g~~~~~~~~~~~~k~   63 (74)
                      ++.-.+||+|+||+|+.|+-.-.....|+
T Consensus       294 ~~~Q~~GeavfiPaG~~HQV~Nl~~~i~v  322 (392)
T 2ypd_A          294 TLIQFLGDAIVLPAGALHQVQNFHSCIQV  322 (392)
T ss_dssp             EEEEETTCEEEECTTCEEEEEESSEEEEE
T ss_pred             EEEEcCCCEEEecCCCHHHHhcccchhhH
Confidence            46678999999999999997766655554

>3pua_A GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe2+ dependent dioxygenases, histone TAI protein, protein binding; HET: OGA; 1.89A {Homo sapiens} PDB: 3pu3_A* 3ptr_B* 3pu8_B* 3pus_A*

Probab=89.89  E-value=0.57  Score=33.41  Aligned_cols=59  Identities=19%  Similarity=0.244  Sum_probs=42.6

Q ss_pred             cCCceE-EEecCc---eEEEEEEecEEEEEe-----------------------------CCCceEEEECCCcEEEEcCC
Q 037642            3 CSPGKF-QLKFDA---EETCYLLKGKVKVYP-----------------------------KGSSDWVEFGAGDLVTIPKG   49 (74)
Q Consensus         3 ~~pg~~-~~~~~~---~E~~~vleG~~~~~~-----------------------------~~g~e~~~~~~GD~v~~p~g   49 (74)
                      ...|++ .+|.|.   .-+..++.|+=...+                             +.+ -...++|||+++||.|
T Consensus       181 Gp~gS~T~fHiD~~gTs~w~~vi~GrK~w~L~PPt~~nl~~y~~~~~s~~~~e~~~~~~~~~~-~ev~l~pGEtlfIPsG  259 (392)
T 3pua_A          181 CVKDSYTDFHIDSGGASAWYHVLKGEKTFYLIRPASANISLYERWRSASNHSEMFFADQVDKC-YKCIVKQGQTLFIPSG  259 (392)
T ss_dssp             ECTTCEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHHSTTGGGSCGGGGSSCC-EEEEEETTCEEEECTT
T ss_pred             eCCCCCCCEeECCCCCceeeeeccceEEEEEECCCcccccchhhcccCcchhhhhhcccccce-EEEEECCCcEEeeCCC
Confidence            345666 467664   567888999866654                             122 3588999999999999


Q ss_pred             CeEEEEEeeeEEE
Q 037642           50 LSCTWDVSVAVDK   62 (74)
Q Consensus        50 ~~~~~~~~~~~~k   62 (74)
                      +-|.--..+....
T Consensus       260 WwH~V~nledSIa  272 (392)
T 3pua_A          260 WIYATLTPVDCLA  272 (392)
T ss_dssp             CEEEEEEEEEEEE
T ss_pred             ceEEEecCCCEEE
Confidence            9998887776543

>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*

Probab=89.74  E-value=1  Score=28.88  Aligned_cols=61  Identities=15%  Similarity=0.207  Sum_probs=38.8

Q ss_pred             CceEEEec--CceEEEEEEecEEEEEeCCCceEEEECCCcEEEE----c-CCCeEEEEEeeeEEEEEEEe
Q 037642            5 PGKFQLKF--DAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTI----P-KGLSCTWDVSVAVDKYYKFE   67 (74)
Q Consensus         5 pg~~~~~~--~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~----p-~g~~~~~~~~~~~~k~y~~~   67 (74)
                      +|..-+..  ..+.+++|++|.+.+..++. ....+.+||.+--    . .-...+....+++ .++.+.
T Consensus        69 ~g~~i~~~G~~~~~~y~i~~G~v~~~~~g~-~~~~l~~G~~fGe~~l~~~~~~~~tv~a~~~~-~~~~i~  136 (291)
T 2qcs_B           69 AGETVIQQGDEGDNFYVIDQGEMDVYVNNE-WATSVGEGGSFGELALIYGTPRAATVKAKTNV-KLWGID  136 (291)
T ss_dssp             TTCEEECTTSBCCEEEEEEECCEEEEETTE-EEEEECTTCEECGGGGTCCCBCSSEEEESSCE-EEEEEE
T ss_pred             CCCEEEeCCCCCceEEEEeeeEEEEEECCe-EEEEcCCCCccchHHHhcCCCCceEEEECCCE-EEEEEE
Confidence            44443332  25889999999999999764 5678999998731    1 1123455555554 444443

>1yll_A PA5104, conserved hypothetical protein; structural genomics, beta-BA PSI, protein structure initiative, midwest center for struc genomics; 1.64A {Pseudomonas aeruginosa} SCOP: b.82.1.17

Probab=89.70  E-value=1.7  Score=28.12  Aligned_cols=64  Identities=11%  Similarity=0.103  Sum_probs=48.2

Q ss_pred             CceEEEecCceEEEEEEecE-EEEEeCCCceEEEE-CCCcEEEEcCCCeEEEEEe-eeEEEEEEEecCC
Q 037642            5 PGKFQLKFDAEETCYLLKGK-VKVYPKGSSDWVEF-GAGDLVTIPKGLSCTWDVS-VAVDKYYKFESTS   70 (74)
Q Consensus         5 pg~~~~~~~~~E~~~vleG~-~~~~~~~g~e~~~~-~~GD~v~~p~g~~~~~~~~-~~~~k~y~~~~~~   70 (74)
                      .|.|..-...+-+..+|+|. +.+..++. ... + ++++.+.|+.+.....+.. ++++.+=++.+.+
T Consensus        52 ~g~FS~FpGidR~i~lL~G~g~~L~~~~~-~~~-L~~~~~p~~F~G~~~v~a~L~~G~~~DfNlM~rr~  118 (200)
T 1yll_A           52 SGGFSGFAGYQRIISVLEGGGMRLRVDGA-ESA-PLRARQAFAFSGDSEVHCTLLDGAIRDFNLIYAPR  118 (200)
T ss_dssp             CEEECCCTTCEEEEEEEESSCEEEEETTE-ECC-CBCBTCCEEEETTSCEEEEESSSCEEEEEEEECTT
T ss_pred             CCCCCCCCCccEEEEEEeCCcEEEecCCC-ccc-cCCCCCcEEeCCCCcEEEEECCCCEEEEEEEEcCC
Confidence            34444434578999999998 99998885 344 7 9999999999999988865 5676666665543

>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}

Probab=89.69  E-value=0.5  Score=34.16  Aligned_cols=60  Identities=17%  Similarity=0.164  Sum_probs=43.3

Q ss_pred             cCCceE-EEecCc---eEEEEEEecEEEEEeC-----------------------------CCceEEEECCCcEEEEcCC
Q 037642            3 CSPGKF-QLKFDA---EETCYLLKGKVKVYPK-----------------------------GSSDWVEFGAGDLVTIPKG   49 (74)
Q Consensus         3 ~~pg~~-~~~~~~---~E~~~vleG~~~~~~~-----------------------------~g~e~~~~~~GD~v~~p~g   49 (74)
                      ..+|++ .+|.|.   .-+..++.|+=...+-                             .. -...++|||+++||.|
T Consensus       238 G~~gS~T~~HiD~~~ts~w~~vi~GrK~w~L~PPt~~nl~~~~~~~~s~~~~~~~~~~~~~~~-~~v~l~pGetlfIPsG  316 (447)
T 3kv4_A          238 SVRDSYTDFHIDFGGTSVWYHVLKGEKIFYLIRPTNANLTLFECWSSSSNQNEMFFGDQVDKC-YKCSVKQGQTLFIPTG  316 (447)
T ss_dssp             ECTTEEEEEECCGGGCEEEEEEEESEEEEEEECCCHHHHHHHHHHHTCSSGGGSCGGGGSSCC-EEEEEETTCEEEECTT
T ss_pred             eCCCCCCCeeECCCCCceeEEEeeeEEEEEEeCCCcccccchhhcccCcchhhhhccccccce-EEEEECCCcEEecCCC
Confidence            345666 477764   4578899998776541                             11 3578999999999999


Q ss_pred             CeEEEEEeeeEEEE
Q 037642           50 LSCTWDVSVAVDKY   63 (74)
Q Consensus        50 ~~~~~~~~~~~~k~   63 (74)
                      +.|.-...+....+
T Consensus       317 WwH~V~nledsIai  330 (447)
T 3kv4_A          317 WIHAVLTPVDCLAF  330 (447)
T ss_dssp             CEEEEEESSCEEEE
T ss_pred             CeEEEecCCCEEEE
Confidence            99988877765433

>1zx5_A Mannosephosphate isomerase, putative; STRU genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; HET: LFR; 2.30A {Archaeoglobus fulgidus} SCOP: b.82.1.3

Probab=89.64  E-value=0.26  Score=33.65  Aligned_cols=21  Identities=19%  Similarity=0.113  Sum_probs=18.5

Q ss_pred             EEEECCCcEEEEcCCCeEEEE
Q 037642           35 WVEFGAGDLVTIPKGLSCTWD   55 (74)
Q Consensus        35 ~~~~~~GD~v~~p~g~~~~~~   55 (74)
                      .+.++|||++++|+|..|..-
T Consensus       159 ~v~l~pGd~~~ipaGt~HA~~  179 (300)
T 1zx5_A          159 TFETTPYDTFVIRPGIPHAGE  179 (300)
T ss_dssp             EEECCTTCEEEECTTCCEEEE
T ss_pred             eeECCCCCEEEcCCCCceEcC
Confidence            578999999999999998753

>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}

Probab=89.45  E-value=1.3  Score=25.07  Aligned_cols=63  Identities=17%  Similarity=0.294  Sum_probs=36.7

Q ss_pred             CCceEEEec--CceEEEEEEecEEEEEe--CCCce-----EEEECCCcEEEEc---CCC--eEEEEEeeeEEEEEEEe
Q 037642            4 SPGKFQLKF--DAEETCYLLKGKVKVYP--KGSSD-----WVEFGAGDLVTIP---KGL--SCTWDVSVAVDKYYKFE   67 (74)
Q Consensus         4 ~pg~~~~~~--~~~E~~~vleG~~~~~~--~~g~e-----~~~~~~GD~v~~p---~g~--~~~~~~~~~~~k~y~~~   67 (74)
                      .+|..-+..  ..+.+++|++|.+.+..  .+|.+     ...+.+||++-..   .+.  ..+..+.+++ .++.+.
T Consensus        35 ~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~~~~G~~fG~~~~~~~~~~~~~~~a~~~~-~~~~i~  111 (142)
T 3mdp_A           35 PTGSVIFKENSKADNLMLLLEGGVELFYSNGGAGSAANSTVCSVVPGAIFGVSSLIKPYHYTSSARATKPV-RVVDIN  111 (142)
T ss_dssp             CTTCEEECTTSBCCEEEEEEESCEEEECC---------CEEEEECTTCEECGGGSSTTCBCSSEEEESSCE-EEEEEE
T ss_pred             CCCCEEEeCCCCCCcEEEEEeCEEEEEEECCCCCceEeeeEEEecCCCEechHHHcCCCCceEEEEECCcE-EEEEEe
Confidence            345444433  35889999999999975  33322     3458999988432   222  3366666665 455554

>3kv9_A JMJC domain-containing histone demethylation protein 1D; jumonji domain lysine demethylase, metal-binding, zinc, zinc-finger; 2.29A {Homo sapiens} PDB: 3kva_A* 3kvb_A* 3u78_A*

Probab=89.41  E-value=0.66  Score=33.14  Aligned_cols=59  Identities=14%  Similarity=0.101  Sum_probs=41.5

Q ss_pred             CCceE-EEecCc---eEEEEEEecEEEEEeC-----------------------------CCceEEEECCCcEEEEcCCC
Q 037642            4 SPGKF-QLKFDA---EETCYLLKGKVKVYPK-----------------------------GSSDWVEFGAGDLVTIPKGL   50 (74)
Q Consensus         4 ~pg~~-~~~~~~---~E~~~vleG~~~~~~~-----------------------------~g~e~~~~~~GD~v~~p~g~   50 (74)
                      ..|++ .+|.|.   .-+..++.|+=...+-                             .. -...++|||+++||.|+
T Consensus       183 p~gS~T~~HiD~~gts~w~~vv~GrK~w~L~PPt~~nl~ly~~~~~s~~~~e~~~~~~~~~~-~~v~l~pGe~lfIPsGW  261 (397)
T 3kv9_A          183 VQDSYTDFHIDFGGTSVWYHVLWGEKIFYLIKPTDENLARYESWSSSVTQSEVFFGDKVDKC-YKCVVKQGHTLFVPTGW  261 (397)
T ss_dssp             CTTCEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHTSGGGGGSCGGGGSSCC-EEEEEETTCEEEECTTC
T ss_pred             CCCCCCCEEECCCCCceeeeecCceEEEEEeCCcccccccccccccCCCcchhhhccccCce-EEEEECCCCEEEeCCCC
Confidence            45666 467663   4577888887665531                             12 34789999999999999


Q ss_pred             eEEEEEeeeEEEE
Q 037642           51 SCTWDVSVAVDKY   63 (74)
Q Consensus        51 ~~~~~~~~~~~k~   63 (74)
                      .|.-...+....+
T Consensus       262 ~H~V~nledSIai  274 (397)
T 3kv9_A          262 IHAVLTSQDCMAF  274 (397)
T ss_dssp             EEEEEEEEEEEEE
T ss_pred             eEEccCCcCeEEE
Confidence            9988877765443

>2p17_A Pirin-like protein; GK1651, structural genomics, south collaboratory for structural genomics, protein structure in secsg; 1.52A {Geobacillus kaustophilus}

Probab=89.33  E-value=1.9  Score=29.03  Aligned_cols=45  Identities=16%  Similarity=0.341  Sum_probs=38.5

Q ss_pred             ecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEE
Q 037642           11 KFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDV   56 (74)
Q Consensus        11 ~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~   56 (74)
                      |.+.+-+-|+++|.+.=.+.-|+ ...++|||+-.+-+|.-....-
T Consensus        57 Hrg~EtVTyvl~G~~~H~DS~Gn-~~~i~~GdvQwMtAG~GI~HsE  101 (277)
T 2p17_A           57 HRGIETVTYVISGELEHFDSKAG-HSTLGPGDVQWMTAGRGVVHKE  101 (277)
T ss_dssp             ECSEEEEEEEEESCEEEEETTTE-EEEECTTCEEEEECTTCEEEEE
T ss_pred             CCCcEEEEEEEEeEEEEeeCCCC-ceEECCCeEEEEeCCCCEEEEe
Confidence            45667799999999999999884 7999999999999998776653

>1qwr_A Mannose-6-phosphate isomerase; structural genomics, D-mannose 6-phosphate, PSI, protein structure initiative; 1.80A {Bacillus subtilis} SCOP: b.82.1.3

Probab=89.24  E-value=0.28  Score=33.63  Aligned_cols=20  Identities=20%  Similarity=0.431  Sum_probs=18.3

Q ss_pred             EEEECCCcEEEEcCCCeEEE
Q 037642           35 WVEFGAGDLVTIPKGLSCTW   54 (74)
Q Consensus        35 ~~~~~~GD~v~~p~g~~~~~   54 (74)
                      .+.++|||+++||+|..|..
T Consensus       159 ~v~l~pGd~~~ipaGt~HA~  178 (319)
T 1qwr_A          159 RIKIKPGDFYYVPSGTLHAL  178 (319)
T ss_dssp             EEECCTTCEEEECTTCCEEE
T ss_pred             EEEcCCCCEEEcCCCCceEe
Confidence            68999999999999999874

>1upi_A DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pathway, PSI, protein structure initiative, TB structural genomics consortium, TB; HET: CME; 1.7A {Mycobacterium tuberculosis} SCOP: b.82.1.1 PDB: 2ixc_A* 1pm7_A*

Probab=89.24  E-value=3.4  Score=27.28  Aligned_cols=60  Identities=13%  Similarity=0.098  Sum_probs=42.2

Q ss_pred             EEEecC---ceEEEEEEecEE-EEEeCCCc--------eEEEECC--CcEEEEcCCCeEEEEEeee-EEEEEEEe
Q 037642            8 FQLKFD---AEETCYLLKGKV-KVYPKGSS--------DWVEFGA--GDLVTIPKGLSCTWDVSVA-VDKYYKFE   67 (74)
Q Consensus         8 ~~~~~~---~~E~~~vleG~~-~~~~~~g~--------e~~~~~~--GD~v~~p~g~~~~~~~~~~-~~k~y~~~   67 (74)
                      ++++..   ...++.|++|++ .+.+|...        ..+.|.+  +..++||+|..|.+.+.+. ..-.|.++
T Consensus        81 lH~q~~p~~q~KlV~vv~G~v~dV~VDlR~~SpTfG~~~~v~Ls~~n~~~L~IP~G~aHgF~~Lsd~a~vly~~s  155 (225)
T 1upi_A           81 LHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHGFLALQDNSTVMYLCS  155 (225)
T ss_dssp             EEEECTTTCCCEEEEEEESEEEEEEECCCBTCTTTTCEEEEEEETTTCCEEEECTTCEEEEEECSSSEEEEEEES
T ss_pred             eeccCCCCCcceEEEEeCCeEEEEEEECCCCCCCCCcEEEEEecCCCCcEEEeCCCeeEEEEEcCCCEEEEEecC
Confidence            455643   789999999996 45554431        2355665  5899999999999998876 44455543

>3eln_A Cysteine dioxygenase type 1; peroxysulfenate, non-heme dioxygenases, Fe2+ metalloenzyme, taurine, thioether, iron, metal- binding; 1.42A {Rattus norvegicus} SCOP: b.82.1.19 PDB: 2gh2_A 2b5h_A 2atf_A* 2q4s_A 2ic1_A

Probab=88.08  E-value=2.3  Score=27.32  Aligned_cols=53  Identities=13%  Similarity=-0.046  Sum_probs=36.1

Q ss_pred             CCceE---EEecCceEEEEEEecEEEEEe----CCC------ceEEEECCCcEEEE-cCCCeEEEEE
Q 037642            4 SPGKF---QLKFDAEETCYLLKGKVKVYP----KGS------SDWVEFGAGDLVTI-PKGLSCTWDV   56 (74)
Q Consensus         4 ~pg~~---~~~~~~~E~~~vleG~~~~~~----~~g------~e~~~~~~GD~v~~-p~g~~~~~~~   56 (74)
                      .||..   +-|.+...++.||+|..+-+.    +++      .....+.+||...| |++.-|.-..
T Consensus        78 ~PGq~SpiHDH~~s~g~i~VL~G~l~e~~y~~~~~~~~~l~~~~~~~l~~G~v~~~~~~~giH~V~N  144 (200)
T 3eln_A           78 GEGHGSSIHDHTDSHCFLKLLQGNLKETLFDWPDKKSNEMIKKSERTLRENQCAYINDSIGLHRVEN  144 (200)
T ss_dssp             CTTCBCCEECCTTCEEEEEEEESCEEEEEECCCCSSCCCCCEEEEEEECTTCEEEECTTTCEEEEEC
T ss_pred             CCCCcCCCccCCCceEEEEEEeeeEEEEEeecCCCCcccccccceEEeCCCCEEEecCCCcEEEEEC
Confidence            45654   223346899999999998774    221      12578999999999 7666555443

>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}

Probab=88.04  E-value=1.2  Score=27.65  Aligned_cols=53  Identities=17%  Similarity=0.103  Sum_probs=35.7

Q ss_pred             ceEEEEEEecEEEEEeCCCceEEEECCCcEEE----E-cCCCeEEEEEeeeEEEEEEEe
Q 037642           14 AEETCYLLKGKVKVYPKGSSDWVEFGAGDLVT----I-PKGLSCTWDVSVAVDKYYKFE   67 (74)
Q Consensus        14 ~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~----~-p~g~~~~~~~~~~~~k~y~~~   67 (74)
                      .+.+++|++|.+.+...+.+....+.+||.|-    + ..-...+..+.+++ .++.+.
T Consensus       166 ~~~~y~I~~G~v~v~~~~~~~~~~l~~g~~fGe~~~~~~~~~~~~v~a~~~~-~~~~i~  223 (246)
T 3of1_A          166 GENFYLIEYGAVDVSKKGQGVINKLKDHDYFGEVALLNDLPRQATVTATKRT-KVATLG  223 (246)
T ss_dssp             CCEEEEEEECEEEEEETTTEEEEEEETTCEECHHHHHHTCBCSSEEEESSCE-EEEEEE
T ss_pred             CCEEEEEEecEEEEEEcCCceEEEcCCCCcccHHHHhCCCCcccEEEECCCE-EEEEEe
Confidence            58899999999999988753357799999873    1 22223445555554 555554

>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}

Probab=87.94  E-value=1.2  Score=28.78  Aligned_cols=52  Identities=21%  Similarity=0.275  Sum_probs=35.3

Q ss_pred             ceEEEEEEecEEEEEeCCCceEEEECCCcEEEE-----cCCCeEEEEEeeeEEEEEEEe
Q 037642           14 AEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTI-----PKGLSCTWDVSVAVDKYYKFE   67 (74)
Q Consensus        14 ~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~-----p~g~~~~~~~~~~~~k~y~~~   67 (74)
                      .+.+++|++|.+.+..++. ....+.+||.+--     ..-...+....+++ .++.+.
T Consensus        80 ~~~~yiI~~G~v~v~~~g~-~~~~~~~G~~fGe~~ll~~~~~~~tv~a~~~~-~l~~i~  136 (299)
T 3shr_A           80 GSLVYVMEDGKVEVTKEGV-KLCTMGPGKVFGELAILYNCTRTATVKTLVNV-KLWAID  136 (299)
T ss_dssp             CCCEEEEEESCEEEEETTE-EEEEECTTCEESCSGGGTTTBCCSEEEESSCE-EEEEEC
T ss_pred             CceEEEEEEEEEEEEECCE-EEEEeCCCCeeeHhHHhcCCCCCcEEEEcCCe-EEEEEc
Confidence            5789999999999988875 5688999998741     11123355555554 444443

>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A

Probab=87.53  E-value=1.2  Score=25.23  Aligned_cols=60  Identities=18%  Similarity=0.315  Sum_probs=39.0

Q ss_pred             CCceEEEec--CceEEEEEEecEEEEEeCCCceEEEECCCcEEEE-----cCCCeEEEEEeeeEEEEEEEe
Q 037642            4 SPGKFQLKF--DAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTI-----PKGLSCTWDVSVAVDKYYKFE   67 (74)
Q Consensus         4 ~pg~~~~~~--~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~-----p~g~~~~~~~~~~~~k~y~~~   67 (74)
                      .+|..-+..  ..+.+++|++|.+.+...+  + ..+.+||++-.     ..-...+..+.+++ .+|.+.
T Consensus        40 ~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~--~-~~~~~G~~~G~~~~~~~~~~~~~~~a~~~~-~~~~i~  106 (138)
T 1vp6_A           40 PAGAVICRIGEPGDRMFFVVEGSVSVATPN--P-VELGPGAFFGEMALISGEPRSATVSAATTV-SLLSLH  106 (138)
T ss_dssp             CTTCEEECTTSCCCEEEEEEESCEEECSSS--C-EEECTTCEECHHHHHHCCCCSSCEEESSSE-EEEEEE
T ss_pred             CCCCEEEeCCCCcceEEEEEeeEEEEEeCC--c-ceECCCCEeeehHhccCCCceeEEEECCCE-EEEEEC
Confidence            345444433  3578999999999998776  2 68999998732     12234556666665 555554

>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*

Probab=87.40  E-value=1  Score=33.38  Aligned_cols=59  Identities=22%  Similarity=0.279  Sum_probs=40.3

Q ss_pred             CCceE-EEecCc---eEEEEEEecEEEEEe----------------------------CCCceEEEECCCcEEEEcCCCe
Q 037642            4 SPGKF-QLKFDA---EETCYLLKGKVKVYP----------------------------KGSSDWVEFGAGDLVTIPKGLS   51 (74)
Q Consensus         4 ~pg~~-~~~~~~---~E~~~vleG~~~~~~----------------------------~~g~e~~~~~~GD~v~~p~g~~   51 (74)
                      ..|+| .+|.|.   .-++.++.|+=.+.+                            ++.-....++|||+++||.|+-
T Consensus       304 ~~gS~Td~HiD~~gts~w~~v~~GrK~w~L~PPt~~nl~~y~~w~~s~~~~~wfgd~l~~~~~~v~l~pGEtlfIPsGW~  383 (528)
T 3pur_A          304 MAGSYTDFHVDFGGSSVYYHILKGEKIFYIAAPTEQNFAAYQAHETSPDTTTWFGDIANGAVKRVVIKEGQTLLIPAGWI  383 (528)
T ss_dssp             CTTEEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHHSSCCSCCGGGGTTTCCEEEEEETTCEEEECTTCE
T ss_pred             CCCCCCCeeECCCCCceeEEEecceEEEEEeCCCccchhhhhhhccCCchhhhhcccccccEEEEEECCCCEEEecCCce
Confidence            34555 467663   457888888765542                            1111247899999999999999


Q ss_pred             EEEEEeeeEEE
Q 037642           52 CTWDVSVAVDK   62 (74)
Q Consensus        52 ~~~~~~~~~~k   62 (74)
                      |.--..+....
T Consensus       384 HaV~tleDSIa  394 (528)
T 3pur_A          384 HAVLTPVDSLV  394 (528)
T ss_dssp             EEEEEEEEEEE
T ss_pred             EEEecCCCeEE
Confidence            88777766533

>2wfp_A Mannose-6-phosphate isomerase; APO-structure, metal-binding; 1.67A {Salmonella typhimurium} PDB: 3h1w_A 3h1m_A 3h1y_A*

Probab=87.28  E-value=0.53  Score=33.30  Aligned_cols=21  Identities=10%  Similarity=0.137  Sum_probs=18.7

Q ss_pred             EEEECCCcEEEEcCCCeEEEE
Q 037642           35 WVEFGAGDLVTIPKGLSCTWD   55 (74)
Q Consensus        35 ~~~~~~GD~v~~p~g~~~~~~   55 (74)
                      .+.++|||++++|+|..|..-
T Consensus       241 ~v~l~pGd~~fipAG~~HAy~  261 (394)
T 2wfp_A          241 VVKLNPGEAMFLFAETPHAYL  261 (394)
T ss_dssp             EEEECTTCEEEECTTCCEEEE
T ss_pred             EEECCCCCEEEcCCCCceEcC
Confidence            578999999999999999854

>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1

Probab=87.13  E-value=3.7  Score=25.23  Aligned_cols=51  Identities=12%  Similarity=0.246  Sum_probs=34.6

Q ss_pred             ceEEEEEEecEEEEEe-CCCceE--EEECCCcEEEEcCCCeEEEEEeeeEEEEEEEe
Q 037642           14 AEETCYLLKGKVKVYP-KGSSDW--VEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFE   67 (74)
Q Consensus        14 ~~E~~~vleG~~~~~~-~~g~e~--~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~~   67 (74)
                      .+.+++|++|.+.+.. .+|.+.  ..+.|||++-  .-...+..+.+++ .++.+.
T Consensus        41 ~~~~y~i~~G~v~~~~~~~G~~~~~~~~~~G~~fG--~~~~~~~~A~~~~-~v~~i~   94 (222)
T 1ft9_A           41 ENGVFVVVDGRLRVYLVGEEREISLFYLTSGDMFC--MHSGCLVEATERT-EVRFAD   94 (222)
T ss_dssp             CCCEEEEEESEEEEEEEETTEEEEEEEEETTCEEE--SCSSCEEEESSCE-EEEEEC
T ss_pred             CCeEEEEEecEEEEEECCCCCEEEEEEcCCCCEec--CCCCEEEEEccce-EEEEEe
Confidence            5789999999999852 344222  3578999988  4456666667775 445544

>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}

Probab=85.90  E-value=3.4  Score=24.68  Aligned_cols=62  Identities=6%  Similarity=-0.024  Sum_probs=38.1

Q ss_pred             CceEEEec--CceEEEEEEecEEEEEe--CCCceE--EEECCCcEEE-E----c-CCCeEEEEEeeeEEEEEEEe
Q 037642            5 PGKFQLKF--DAEETCYLLKGKVKVYP--KGSSDW--VEFGAGDLVT-I----P-KGLSCTWDVSVAVDKYYKFE   67 (74)
Q Consensus         5 pg~~~~~~--~~~E~~~vleG~~~~~~--~~g~e~--~~~~~GD~v~-~----p-~g~~~~~~~~~~~~k~y~~~   67 (74)
                      +|..-+..  ..+.+++|++|.+.+..  ++|.+.  ..+.|||++- +    . .-...+....+++ .++.+.
T Consensus        37 ~g~~l~~~G~~~~~~y~i~~G~v~~~~~~~~G~e~~~~~~~~g~~~ge~~~~~~~~~~~~~~~a~~~~-~v~~i~  110 (194)
T 3dn7_A           37 KKETLLKTGEICRINYFVVKGCLRLFFIDEKGIEQTTQFAIENWWLSDYMAFQKQQPADFYIQSVENC-ELLSIT  110 (194)
T ss_dssp             TTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEECCHHHHHHTCBCSSEEEESSCE-EEEEEE
T ss_pred             CCCEEECCCCeeeEEEEeecCeEEEEEECCCCCEEEEEEccCCcEEeehHHHhcCCCCceEEEEECCE-EEEEEe
Confidence            44444433  25889999999999874  455332  2378999985 3    1 2234566666665 445544

>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E

Probab=85.74  E-value=1.3  Score=34.00  Aligned_cols=43  Identities=19%  Similarity=0.175  Sum_probs=31.1

Q ss_pred             ceEEEEEEecEEEEEeCCCceEEEECCCcEEE---EcCCCeEEEEE
Q 037642           14 AEETCYLLKGKVKVYPKGSSDWVEFGAGDLVT---IPKGLSCTWDV   56 (74)
Q Consensus        14 ~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~---~p~g~~~~~~~   56 (74)
                      .+.+++|++|++.|..++......+++||.|=   +-.+.+..+.+
T Consensus       379 gds~YIIlsG~V~V~~~~~~~v~~L~~Gd~FGElALL~~~PR~aTV  424 (999)
T 4f7z_A          379 GTSWYIILKGSVNVVIYGKGVVCTLHEGDDFGKLALVNDAPRAASI  424 (999)
T ss_dssp             CCEEEEEEESEEEEEETTTEEEEEEETTCEECGGGGTCSCBCSSEE
T ss_pred             CCeEEEEEeeEEEEEEcCCcceEEecCCCcccchhhccCCCeeEEE
Confidence            48899999999999887653567899999983   33444444443

>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2

Probab=85.69  E-value=2.6  Score=29.01  Aligned_cols=41  Identities=22%  Similarity=0.250  Sum_probs=30.0

Q ss_pred             CCceEEEec--CceEEEEEEecEEEEEeCCCceEEEECCCcEE
Q 037642            4 SPGKFQLKF--DAEETCYLLKGKVKVYPKGSSDWVEFGAGDLV   44 (74)
Q Consensus         4 ~pg~~~~~~--~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v   44 (74)
                      .+|..-+..  ..+.+++|++|.+.+...+......+.+||.|
T Consensus       367 ~~g~~i~~~G~~~~~~yiI~~G~v~v~~~~~~~~~~l~~G~~f  409 (469)
T 1o7f_A          367 KGGTVLFNQGEEGTSWYIILKGSVNVVIYGKGVVCTLHEGDDF  409 (469)
T ss_dssp             STTCEEECTTSCCCEEEEEEESEEEEEETTTEEEEEEETTCEE
T ss_pred             cCCCEEEeCCCcCCeEEEEEEeEEEEEEcCCeeEEEecCCCEE
Confidence            345444433  35899999999999988764345789999987

>4hn1_A Putative 3-epimerase in D-allose pathway; 3'-monoepimerase, natural product, deoxysugar, chalcomycin, mycinose, cupin fold; HET: TYD THM; 1.60A {Streptomyces bikiniensis} PDB: 4hmz_A* 4hn0_A

Probab=85.14  E-value=5.9  Score=25.72  Aligned_cols=60  Identities=13%  Similarity=0.064  Sum_probs=42.4

Q ss_pred             EEec---CceEEEEEEecEEEEE-eCC--Cc------eEEEECC--CcEEEEcCCCeEEEEEeee-EEEEEEEec
Q 037642            9 QLKF---DAEETCYLLKGKVKVY-PKG--SS------DWVEFGA--GDLVTIPKGLSCTWDVSVA-VDKYYKFES   68 (74)
Q Consensus         9 ~~~~---~~~E~~~vleG~~~~~-~~~--g~------e~~~~~~--GD~v~~p~g~~~~~~~~~~-~~k~y~~~~   68 (74)
                      +++.   .+..++.|+.|++.-. +|-  ++      ..+.|.+  +-.++||+|.-|-+.+.++ ..-.|.+..
T Consensus        60 H~q~~p~~q~KlV~~~~G~v~DV~VDlR~~SpTfG~w~~v~Ls~en~~~l~IP~GfaHGF~~Lsd~a~~~Y~~t~  134 (201)
T 4hn1_A           60 NYTEIPPGQAKYSVCVRGAGLDVVVDVRIGSPTFGRWEIVPMDAERNTAVYLTAGLGRAFLSLTDDATLVFLCSS  134 (201)
T ss_dssp             EEECSSSCCCEEEEEEESEEEEEEECCCBTCTTTTCEEEEEEETTTCCEEEECTTCEEEEEECSTTEEEEEEESS
T ss_pred             EecCCCCCceEEEEEeCCeEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCcceEEEeecCCCeEEEEeCCC
Confidence            4554   5799999999996443 332  11      2355665  8899999999999999876 555677643

>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}

Probab=84.32  E-value=5.1  Score=24.30  Aligned_cols=63  Identities=10%  Similarity=0.131  Sum_probs=38.9

Q ss_pred             CCceEEEec--CceEEEEEEecEEEEEe--CCCceE--EEECCCcEEEE-------cCCCeEEEEEeeeEEEEEEEe
Q 037642            4 SPGKFQLKF--DAEETCYLLKGKVKVYP--KGSSDW--VEFGAGDLVTI-------PKGLSCTWDVSVAVDKYYKFE   67 (74)
Q Consensus         4 ~pg~~~~~~--~~~E~~~vleG~~~~~~--~~g~e~--~~~~~GD~v~~-------p~g~~~~~~~~~~~~k~y~~~   67 (74)
                      .+|..-+..  ..+.+++|++|.+.+..  ++|.+.  ..+.|||++.|       ..-...+....+++ .++.+.
T Consensus        32 ~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~a~~~~-~~~~i~  107 (220)
T 3dv8_A           32 KKGTIIHNGNMDCTGLLLVKSGQLRTYILSDEGREITLYRLFDMDMCLLSASCIMRSIQFEVTIEAEKDT-DLWIIP  107 (220)
T ss_dssp             CTTCEEEEGGGCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESGGGGGGCTTCCCCCEEEESSCE-EEEEEE
T ss_pred             CCCCEEECCCCCcceEEEEEeceEEEEEECCCCCEEEEEecCCCCeeehhHHHHhCCCCCceEEEEeeee-EEEEEE
Confidence            344443432  35889999999999874  444322  45789999632       22345566666676 455554

>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*

Probab=83.70  E-value=5.6  Score=24.28  Aligned_cols=60  Identities=12%  Similarity=0.137  Sum_probs=37.4

Q ss_pred             CceEEEec--CceEEEEEEecEEEEEe-CCCceE--EEECCCcEEEEcCCCeEEEEEeeeEEEEEEEe
Q 037642            5 PGKFQLKF--DAEETCYLLKGKVKVYP-KGSSDW--VEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFE   67 (74)
Q Consensus         5 pg~~~~~~--~~~E~~~vleG~~~~~~-~~g~e~--~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~~   67 (74)
                      +|..-+..  ..+.+++|++|.+.+.. .+|.+.  ..+.|||++-.|  ...+....+++ .++.+.
T Consensus        34 ~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~~~~~~~G~~~G~~--~~~~~~A~~~~-~v~~i~   98 (220)
T 2fmy_A           34 KKAILYTPNTERNLVFLVKSGRVRVYLAYEDKEFTLAILEAGDIFCTH--TRAFIQAMEDT-TILYTD   98 (220)
T ss_dssp             TTCEEECTTCSSCEEEEEEESEEEEEEECSSCEEEEEEEETTCEEESC--SSSEEEESSSE-EEEEEE
T ss_pred             CCCEEECCCCCCCeEEEEEecEEEEEECCCCCEEEEEEcCCCCEeCCc--cceEEEEcCcE-EEEEEe
Confidence            44443432  35789999999999843 444322  357899998763  44455566665 445544

>1pmi_A PMI, phosphomannose isomerase; aldose-ketose isomerase; 1.70A {Candida albicans} SCOP: b.82.1.3

Probab=83.65  E-value=1.1  Score=32.18  Aligned_cols=21  Identities=10%  Similarity=0.136  Sum_probs=18.8

Q ss_pred             EEEECCCcEEEEcCCCeEEEE
Q 037642           35 WVEFGAGDLVTIPKGLSCTWD   55 (74)
Q Consensus        35 ~~~~~~GD~v~~p~g~~~~~~   55 (74)
                      .+.++|||++++|+|..|..-
T Consensus       267 ~v~L~pGea~flpAg~~HAYl  287 (440)
T 1pmi_A          267 HVGLNKGEAMFLQAKDPHAYI  287 (440)
T ss_dssp             EEEECTTCEEEECTTCCEEEE
T ss_pred             eEecCCCCEEecCCCCccccC
Confidence            478999999999999999765

>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2

Probab=82.98  E-value=0.89  Score=25.76  Aligned_cols=63  Identities=11%  Similarity=0.232  Sum_probs=39.1

Q ss_pred             CCceEEEec--CceEEEEEEecEEEEEeC-CCceE--E--EECCCcEEE-------EcCC-------CeEEEEEeeeEEE
Q 037642            4 SPGKFQLKF--DAEETCYLLKGKVKVYPK-GSSDW--V--EFGAGDLVT-------IPKG-------LSCTWDVSVAVDK   62 (74)
Q Consensus         4 ~pg~~~~~~--~~~E~~~vleG~~~~~~~-~g~e~--~--~~~~GD~v~-------~p~g-------~~~~~~~~~~~~k   62 (74)
                      ++|..-+..  ..+.+++|++|.+.+... +|.+.  .  .+.+||++-       +...       ...+....+++ .
T Consensus        35 ~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~~~~~~~~~~A~~~~-~  113 (137)
T 1wgp_A           35 TEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEV-E  113 (137)
T ss_dssp             CTTEEEECTTSBCSEEEEEEECCCEEECCSSCSSSSSCEEECCTTCBSSTHHHHHHHCSSCCSSSCBCSSEEEESSCB-E
T ss_pred             CCCCEEEeCCCCCCeEEEEEeeEEEEEEcCCCcceeeeeeeecCCCEecHHHHHHHhccccccccccceeEEEEeEEE-E
Confidence            455554443  257899999999997743 33221  2  788999873       4333       23566777775 4


Q ss_pred             EEEEe
Q 037642           63 YYKFE   67 (74)
Q Consensus        63 ~y~~~   67 (74)
                      ++.+.
T Consensus       114 ~~~i~  118 (137)
T 1wgp_A          114 AFALI  118 (137)
T ss_dssp             EEEEE
T ss_pred             EEEEC
Confidence            55554

>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2

Probab=82.44  E-value=5.4  Score=23.93  Aligned_cols=63  Identities=14%  Similarity=0.151  Sum_probs=37.7

Q ss_pred             CCceEEEec--CceEEEEEEecEEEEEe--CCCce--EEEECCCcEEEEc----CC-----CeEEEEEeeeEEEEEEEe
Q 037642            4 SPGKFQLKF--DAEETCYLLKGKVKVYP--KGSSD--WVEFGAGDLVTIP----KG-----LSCTWDVSVAVDKYYKFE   67 (74)
Q Consensus         4 ~pg~~~~~~--~~~E~~~vleG~~~~~~--~~g~e--~~~~~~GD~v~~p----~g-----~~~~~~~~~~~~k~y~~~   67 (74)
                      .+|..-+..  ..+.+++|++|.+.+..  .+|.+  ...+.|||++-..    ..     ...+....+++ .++.+.
T Consensus        19 ~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~~~~~~~~~~~~~~~~~~A~~~~-~v~~i~   96 (207)
T 2oz6_A           19 TAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLFEKEGSEQERSAWVRAKVEC-EVAEIS   96 (207)
T ss_dssp             CTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEESCTTTCC-----CBCCSEEEESSCE-EEEEEE
T ss_pred             CCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCCcccHHHhcCCCCCCCcceEEEECCcE-EEEEEC
Confidence            345544443  25789999999999874  34432  2357899988322    22     44556666665 445544

>1j1l_A Pirin; beta sandwich, cupin, iron, metatl binding protein; 2.10A {Homo sapiens} SCOP: b.82.1.12 PDB: 3acl_A*

Probab=82.38  E-value=3.9  Score=27.70  Aligned_cols=49  Identities=20%  Similarity=0.146  Sum_probs=40.0

Q ss_pred             eEEEe--cCceEEEEEE-ecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEE
Q 037642            7 KFQLK--FDAEETCYLL-KGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDV   56 (74)
Q Consensus         7 ~~~~~--~~~~E~~~vl-eG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~   56 (74)
                      .|..|  .+.+-+-|++ +|.+.-.+.-|+ ...++|||+-.+-+|.-....-
T Consensus        52 Gf~~HPHrg~EtVTyvl~~G~~~H~DS~Gn-~~~i~~GdvQwMtAG~GI~HsE  103 (290)
T 1j1l_A           52 GFPDHPHRGFETVSYLLEGGSMAHEDFCGH-TGKMNPGDLQWMTAGRGILHAE  103 (290)
T ss_dssp             BEEEEEEBSEEEEEEECSSSCEEEEETTSC-EEEECTTCEEEEECTTCEEEEE
T ss_pred             CCCCCCCCCeEEEEEECcceEEEEeeCCCC-ceEECCCcEEEEeCCCCEEEEe
Confidence            36544  5556688999 999999999885 6999999999999998776653

>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}

Probab=81.95  E-value=3.5  Score=23.42  Aligned_cols=63  Identities=17%  Similarity=0.298  Sum_probs=38.1

Q ss_pred             CCceEEEec--CceEEEEEEecEEEEEeC--CCce--EEEECCCcEEE----EcC-C-CeEEEEEeeeEEEEEEEe
Q 037642            4 SPGKFQLKF--DAEETCYLLKGKVKVYPK--GSSD--WVEFGAGDLVT----IPK-G-LSCTWDVSVAVDKYYKFE   67 (74)
Q Consensus         4 ~pg~~~~~~--~~~E~~~vleG~~~~~~~--~g~e--~~~~~~GD~v~----~p~-g-~~~~~~~~~~~~k~y~~~   67 (74)
                      .+|..-+..  ..+.+++|++|.+.+...  +|.+  ...+.+||++-    +.. . ...+..+.+++ .++.+.
T Consensus        41 ~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~~~~~~~~~~~~~a~~~~-~~~~i~  115 (154)
T 2z69_A           41 DKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAEAMMFMDTPNYVATAQAVVPS-QLFRFS  115 (154)
T ss_dssp             CTTCEEECTTSBCCEEEEEEESCEEEECCCC-----CCEEECTTEEESGGGGGSSCSBCSSEEEESSSE-EEEEEE
T ss_pred             cCCCEEecCCCccceEEEEEeCEEEEEEECCCCCEEEEEEccCCCeeccHhhccCCCCCceEEEEccce-EEEEEC
Confidence            345444433  357899999999999853  3321  24789999873    222 2 45666777775 555554

>2qjv_A Uncharacterized IOLB-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.90A {Salmonella typhimurium LT2}

Probab=81.83  E-value=5.9  Score=26.86  Aligned_cols=37  Identities=22%  Similarity=0.287  Sum_probs=25.6

Q ss_pred             EEEEE-Ee---cEEEEEe----CCCceEEEECCCcEEEEcCCCeEE
Q 037642           16 ETCYL-LK---GKVKVYP----KGSSDWVEFGAGDLVTIPKGLSCT   53 (74)
Q Consensus        16 E~~~v-le---G~~~~~~----~~g~e~~~~~~GD~v~~p~g~~~~   53 (74)
                      |++|. +.   |.+.-.+    ....+.+.++-||+|++|+|. |.
T Consensus       186 E~YYf~~~~~~gf~~q~vyt~d~~~de~~~V~~~d~VlvP~Gy-Hp  230 (270)
T 2qjv_A          186 ETYYHRFNPPQGFCLQRVYTDDRSLDECMAVYNRDVVXVPXGY-HP  230 (270)
T ss_dssp             EEEEEEEESTTCEEEEEEECTTSSSEEEEEEETTCEEEESSSB-CC
T ss_pred             eEEEEECCCCCCEEEEEEeCCCCCCceEEEEECCCEEecCCCc-CC
Confidence            77754 43   4444333    222367999999999999999 76

>1pcq_O Groes protein; chaperone; HET: ADP; 2.81A {Escherichia coli} SCOP: b.35.1.1 PDB: 1gru_O 1aon_O* 1pf9_O* 1svt_O* 1sx4_O* 2c7c_O 2c7d_O

Probab=81.03  E-value=0.82  Score=26.61  Aligned_cols=18  Identities=22%  Similarity=0.523  Sum_probs=13.9

Q ss_pred             EEECCCcEEEEcCCCeEE
Q 037642           36 VEFGAGDLVTIPKGLSCT   53 (74)
Q Consensus        36 ~~~~~GD~v~~p~g~~~~   53 (74)
                      ..+++||.|+|++|..++
T Consensus        57 ~~VkvGD~Vlf~k~y~Gt   74 (97)
T 1pcq_O           57 LDVKVGDIVIFNDGYGVK   74 (97)
T ss_dssp             CSCCTTCEEEECCCSSCE
T ss_pred             cccCCCCEEEECCccCCe
Confidence            458999999999944443

>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}

Probab=80.95  E-value=5.4  Score=22.40  Aligned_cols=63  Identities=16%  Similarity=0.163  Sum_probs=37.2

Q ss_pred             CceEEEecC--ceEEEEEEecEEEEEe--CCCce--EEEECCCcEEEEc-----CCCeEEEEEeeeEEEEEEEec
Q 037642            5 PGKFQLKFD--AEETCYLLKGKVKVYP--KGSSD--WVEFGAGDLVTIP-----KGLSCTWDVSVAVDKYYKFES   68 (74)
Q Consensus         5 pg~~~~~~~--~~E~~~vleG~~~~~~--~~g~e--~~~~~~GD~v~~p-----~g~~~~~~~~~~~~k~y~~~~   68 (74)
                      +|..-+..+  .+.+++|++|.+.+..  .+|.+  ...+.+||++-..     .-...+..+.+++ .+|.+..
T Consensus        35 ~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~~~~~~~~~~~a~~~~-~~~~i~~  108 (149)
T 2pqq_A           35 RGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDGRENMLAVVGPSELIGELSLFDPGPRTATGTALTEV-KLLALGH  108 (149)
T ss_dssp             TTCEEECTTSEECEEEEEEESCEEEEEECTTSSEEEEEEECTTCEESGGGGTSCEECSSEEEESSCE-EEEEEEG
T ss_pred             CCCEEECCCCCCCeEEEEEecEEEEEEECCCCcEEEEEEcCCcCEechHHhcCCCCcceEEEEccce-EEEEEeH
Confidence            444434332  4789999999999875  23322  2468899987321     1233455566665 5555554

>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*

Probab=80.74  E-value=4.8  Score=23.36  Aligned_cols=62  Identities=10%  Similarity=0.152  Sum_probs=36.4

Q ss_pred             CceEEEec--CceEEEEEEecEEEEEeC-CCce--EEEECCCcEEEE-----cCCCeEEEEEeeeEEEEEEEe
Q 037642            5 PGKFQLKF--DAEETCYLLKGKVKVYPK-GSSD--WVEFGAGDLVTI-----PKGLSCTWDVSVAVDKYYKFE   67 (74)
Q Consensus         5 pg~~~~~~--~~~E~~~vleG~~~~~~~-~g~e--~~~~~~GD~v~~-----p~g~~~~~~~~~~~~k~y~~~   67 (74)
                      +|..-+..  ..+.+++|++|.+.+... +|.+  ...+.+||++--     ..-...+....+++ .++.+.
T Consensus        68 ~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~~~~~~~G~~fGe~~~~~~~~~~~~v~A~~~~-~~~~i~  139 (161)
T 3idb_B           68 EGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRGSFGELALMYNTPRAATITATSPG-ALWGLD  139 (161)
T ss_dssp             TTCEEECTTSCCCEEEEEEESEEEEEEEETTEEEEEEEEESCCEECGGGGTCCCCCSSEEEESSSE-EEEEEE
T ss_pred             CCCEEEeCCCCCcEEEEEEeCEEEEEEcCCCCeEEEEEcCCCCEechHHHHcCCCcccEEEECCCe-EEEEEe
Confidence            44444433  358899999999998752 3312  234889997631     22234455566665 455544

>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*

Probab=80.56  E-value=7  Score=23.89  Aligned_cols=62  Identities=15%  Similarity=0.203  Sum_probs=38.3

Q ss_pred             CceEEEec--CceEEEEEEecEEEEEe--CCCceE--EEECCCcEEEE-----cCCCeEEEEEeeeEEEEEEEe
Q 037642            5 PGKFQLKF--DAEETCYLLKGKVKVYP--KGSSDW--VEFGAGDLVTI-----PKGLSCTWDVSVAVDKYYKFE   67 (74)
Q Consensus         5 pg~~~~~~--~~~E~~~vleG~~~~~~--~~g~e~--~~~~~GD~v~~-----p~g~~~~~~~~~~~~k~y~~~   67 (74)
                      +|..-+..  ..+.+++|++|.+.+..  .+|.+.  ..+.|||++-.     ..-...+....+++ .++.+.
T Consensus        36 ~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~~~~~~~~~~~~A~~~~-~v~~i~  108 (227)
T 3d0s_A           36 RGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMFGELSIFDPGPRTSSATTITEV-RAVSMD  108 (227)
T ss_dssp             TTCEEECTTCCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESCHHHHSCSCCSSEEEESSCE-EEEEEE
T ss_pred             CCCEEEcCCCcCCEEEEEEeeEEEEEEECCCCcEEEEEEecCCCEEeeHHHcCCCCceeEEEEcccE-EEEEEe
Confidence            44443432  35789999999999875  344322  36889998832     23345566666775 555554

>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A

Probab=80.39  E-value=4.8  Score=24.20  Aligned_cols=64  Identities=16%  Similarity=0.043  Sum_probs=38.6

Q ss_pred             CCceEEEec--CceEEEEEEecEEEEEe--CCCce--EEEECCCcEEEE---c-CCCeEEEEEeeeEEEEEEEec
Q 037642            4 SPGKFQLKF--DAEETCYLLKGKVKVYP--KGSSD--WVEFGAGDLVTI---P-KGLSCTWDVSVAVDKYYKFES   68 (74)
Q Consensus         4 ~pg~~~~~~--~~~E~~~vleG~~~~~~--~~g~e--~~~~~~GD~v~~---p-~g~~~~~~~~~~~~k~y~~~~   68 (74)
                      ++|..-+..  ..+.+++|++|.+.+..  ++|.+  ...+.|||++-.   . .-...+....+++ .++.+..
T Consensus         5 ~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~Ge~~~~~~~~~~~~~A~~~~-~v~~i~~   78 (195)
T 3b02_A            5 ARKETIYLRGEEARTLYRLEEGLVRVVELLPDGRLITLRHVLPGDYFGEEALEGKAYRYTAEAMTEA-VVQGLEP   78 (195)
T ss_dssp             CTTCEEECTTSBCCCEEEEEESCEEEEEECTTSCEEEEEEECTTCEECGGGGTCSBCSSEEEESSSE-EEEEECG
T ss_pred             CCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEecCCCEechhhhCCCCceeEEEECCcE-EEEEEcH
Confidence            455554443  35789999999999864  34432  236889998832   1 1234556666665 4555543

>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*

Probab=80.27  E-value=7.2  Score=23.98  Aligned_cols=62  Identities=13%  Similarity=0.156  Sum_probs=37.9

Q ss_pred             CceEEEec--CceEEEEEEecEEEEEe--CCCce--EEEECCCcEEEE-----cCCCeEEEEEeeeEEEEEEEe
Q 037642            5 PGKFQLKF--DAEETCYLLKGKVKVYP--KGSSD--WVEFGAGDLVTI-----PKGLSCTWDVSVAVDKYYKFE   67 (74)
Q Consensus         5 pg~~~~~~--~~~E~~~vleG~~~~~~--~~g~e--~~~~~~GD~v~~-----p~g~~~~~~~~~~~~k~y~~~   67 (74)
                      +|..-+..  ..+.+++|++|.+.+..  .+|.+  ...+.|||++-.     ..-...+..+.+++ .++.+.
T Consensus        41 ~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~~~~~~~~~~~~~~~a~~~~-~v~~i~  113 (237)
T 3fx3_A           41 RGETLFLQEEKAQAIHVVIDGWVKLFRMTPTGSEAVVSVFTRGESFGEAVALRNTPYPVSAEAVTPC-EVMHIP  113 (237)
T ss_dssp             TTCEEECTTSCCCEEEEEEESEEEEEEECTTSCEEEEEEEETTEEECHHHHHHTCCCSSEEEESSSE-EEEEEE
T ss_pred             CCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEeCCCCEechHHHhcCCCCCceEEECCce-EEEEEc
Confidence            44443433  35789999999999885  44432  235789998833     22344556666665 445544

>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...

Probab=80.11  E-value=6.2  Score=23.71  Aligned_cols=62  Identities=19%  Similarity=0.246  Sum_probs=38.4

Q ss_pred             CceEEEec--CceEEEEEEecEEEEEe--CCCce--EEEECCCcEEEE----cCC--CeEEEEEeeeEEEEEEEe
Q 037642            5 PGKFQLKF--DAEETCYLLKGKVKVYP--KGSSD--WVEFGAGDLVTI----PKG--LSCTWDVSVAVDKYYKFE   67 (74)
Q Consensus         5 pg~~~~~~--~~~E~~~vleG~~~~~~--~~g~e--~~~~~~GD~v~~----p~g--~~~~~~~~~~~~k~y~~~   67 (74)
                      +|..-+..  ..+.+++|++|.+.+..  .+|.+  ...+.|||++-.    -.+  ...+..+.+++ .++.+.
T Consensus        26 ~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~~~~~~~~~~~~a~~~~-~v~~i~   99 (210)
T 3ryp_A           26 SKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTAC-EVAEIS   99 (210)
T ss_dssp             TTCEEECTTSBCCEEEEEEESEEEEEEECTTCCEEEEEEEETTCEESCTTTTSTTCBCSSEEEESSCE-EEEEEE
T ss_pred             CCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeeeHHHhcCCCCceEEEEECCcE-EEEEEc
Confidence            44443433  25889999999999974  44432  234799999842    222  45566667776 555554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	74
d1o5ua_	88	b.82.1.8 (A:) Hypothetical protein TM1112 {Thermot	6e-22
d2pyta1	128	b.82.1.24 (A:100-227) Ethanolamine utilization pro	1e-08
d2oyza1	93	b.82.1.22 (A:2-94) Uncharacterized protein VPA0057	3e-04
d1y3ta1	330	b.82.1.5 (A:5-334) Hypothetical protein YxaG {Baci	0.001

>d1o5ua_ b.82.1.8 (A:) Hypothetical protein TM1112 {Thermotoga maritima [TaxId: 2336]} Length = 88

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Hypothetical protein TM1112
domain: Hypothetical protein TM1112
species: Thermotoga maritima [TaxId: 2336]

 Score = 78.6 bits (194), Expect = 6e-22
 Identities = 27/66 (40%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 1  WGCSPGKFQLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAV 60
          W     +F   +D  ETCY+L+GKV+V  +          GDLVT PKGL C W V   V
Sbjct: 23 WEKEVSEFDWYYDTNETCYILEGKVEVTTEDGKK-YVIEKGDLVTFPKGLRCRWKVLEPV 81

Query: 61 DKYYKF 66
           K+Y  
Sbjct: 82 RKHYNL 87

>d2pyta1 b.82.1.24 (A:100-227) Ethanolamine utilization protein EutQ {Salmonella typhimurium [TaxId: 90371]} Length = 128

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: EutQ-like
domain: Ethanolamine utilization protein EutQ
species: Salmonella typhimurium [TaxId: 90371]

 Score = 46.1 bits (109), Expect = 1e-08
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 1   WGCSPGKFQLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAV 60
                  F    + +E   +L+G++ V  +G  + +   AGD++ IPKG S  +    +V
Sbjct: 59  MQWDNAFFPWTLNYDEIDMVLEGELHVRHEG--ETMIAKAGDVMFIPKGSSIEFGTPTSV 116

Query: 61  DKYY 64
              Y
Sbjct: 117 RFLY 120

>d2oyza1 b.82.1.22 (A:2-94) Uncharacterized protein VPA0057 {Vibrio parahaemolyticus [TaxId: 670]} Length = 93

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: VPA0057-like
domain: Uncharacterized protein VPA0057
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 33.5 bits (77), Expect = 3e-04
 Identities = 14/57 (24%), Positives = 24/57 (42%)

Query: 5  PGKFQLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVD 61
          PG++     A E   ++KG + V   G +DW  + +G+   +    S    V  A  
Sbjct: 31 PGEYTFGTQAPERMTVVKGALVVKRVGEADWTTYSSGESFDVEGNSSFELQVKDATA 87

>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus subtilis [TaxId: 1423]} Length = 330

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Hypothetical protein YxaG
species: Bacillus subtilis [TaxId: 1423]

 Score = 33.3 bits (75), Expect = 0.001
 Identities = 9/37 (24%), Positives = 18/37 (48%), Gaps = 2/37 (5%)

Query: 13  DAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKG 49
              ET Y L+G++ ++  G    ++   GD + +P  
Sbjct: 234 YHTETFYCLEGQMTMWTDG--QEIQLNPGDFLHVPAN 268

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	74
d1o5ua_	88	Hypothetical protein TM1112 {Thermotoga maritima [	99.93
d2pyta1	128	Ethanolamine utilization protein EutQ {Salmonella	99.75
d1yhfa1	112	Hypothetical protein SPy1581 {Streptococcus pyogen	99.27
d2b8ma1	108	Hypothetical protein MJ0764 {Archaeon Methanococcu	99.18
d1v70a_	105	Hypothetical protein TTHA0104 {Thermus thermophilu	99.16
d1o4ta_	115	Hypothetical protein TM1287 {Thermotoga maritima [	99.11
d1y9qa2	99	Probable transcriptional regulator VC1968, C-termi	99.07
d2oyza1	93	Uncharacterized protein VPA0057 {Vibrio parahaemol	98.98
d1vj2a_	114	Hypothetical protein TM1459 {Thermotoga maritima [	98.98
d1y3ta1	330	Hypothetical protein YxaG {Bacillus subtilis [TaxI	98.96
d1juha_	348	Quercetin 2,3-dioxygenase {Aspergillus japonicus [	98.92
d1rc6a_	253	Hypothetical protein YlbA {Escherichia coli [TaxId	98.9
d1sfna_	245	Hypothetical protein DR1152 {Deinococcus radiodura	98.86
d2f4pa1	134	Hypothetical protein TM1010 {Thermotoga maritima [	98.86
d1y3ta1	330	Hypothetical protein YxaG {Bacillus subtilis [TaxI	98.84
d1juha_	348	Quercetin 2,3-dioxygenase {Aspergillus japonicus [	98.84
d1fxza2	174	Seed storage 7S protein {Soybean (Glycine max), pr	98.82
d1dgwa_	178	Seed storage 7S protein {Jack bean (Canavalia ensi	98.82
d1lr5a_	160	Auxin binding protein {Maize (Zea mays) [TaxId: 45	98.81
d1uika1	203	Seed storage 7S protein {Soybean (Glycine max), be	98.8
g1dgw.1	168	Seed storage 7S protein {Jack bean (Canavalia ensi	98.8
d1uija1	170	Seed storage 7S protein {Soybean (Glycine max), be	98.8
d2bnma2	122	Hydroxypropylphosphonic acid epoxidase Fom4, C-ter	98.8
d1od5a2	173	Seed storage 7S protein {Soybean (Glycine max), gl	98.79
d1sefa_	250	Hypothetical protein EF2996 {Enterococcus faecalis	98.79
d1x82a_	190	Glucose-6-phosphate isomerase, GPI {Archaeon Pyroc	98.74
d1sfna_	245	Hypothetical protein DR1152 {Deinococcus radiodura	98.72
d1uika2	185	Seed storage 7S protein {Soybean (Glycine max), be	98.71
d1sq4a_	273	Glyoxylate-induced protein PA1140 {Pseudomonas aer	98.7
d1j58a_	372	Oxalate decarboxylase OxdC (YvrK) {Bacillus subtil	98.66
d2phla2	162	Seed storage 7S protein {French bean (Phaseolus vu	98.66
d1sefa_	250	Hypothetical protein EF2996 {Enterococcus faecalis	98.64
d2arca_	161	Regulatory protein AraC {Escherichia coli [TaxId:	98.62
d2d40a1	308	Gentisate 1,2-dioxygenase {Escherichia coli [TaxId	98.54
d2et1a1	201	Germin {Barley (Hordeum vulgare) [TaxId: 4513]}	98.54
d1sq4a_	273	Glyoxylate-induced protein PA1140 {Pseudomonas aer	98.53
d1rc6a_	253	Hypothetical protein YlbA {Escherichia coli [TaxId	98.52
d1j58a_	372	Oxalate decarboxylase OxdC (YvrK) {Bacillus subtil	98.51
d2d40a1	308	Gentisate 1,2-dioxygenase {Escherichia coli [TaxId	98.4
d2phla1	200	Seed storage 7S protein {French bean (Phaseolus vu	98.39
d3bu7a1	355	Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [	98.36
d2phda1	351	Gentisate 1,2-dioxygenase {Pseudaminobacter salicy	98.3
d1vr3a1	179	Acireductone dioxygenase {Mouse (Mus musculus) [Ta	98.28
d1zrra1	179	Acireductone dioxygenase {Klebsiella pneumoniae [T	98.22
d2phda1	351	Gentisate 1,2-dioxygenase {Pseudaminobacter salicy	98.21
d1eyba_	439	Homogentisate dioxygenase {Human (Homo sapiens) [T	98.16
d3bu7a1	355	Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [	98.02
d1fxza1	239	Seed storage 7S protein {Soybean (Glycine max), pr	97.86
d1yfua1	174	3-hydroxyanthranilate-3,4-dioxygenase {Ralstonia m	97.79
d1zvfa1	175	3-hydroxyanthranilate-3,4-dioxygenase {Baker's yea	97.72
d1od5a1	245	Seed storage 7S protein {Soybean (Glycine max), gl	97.68
d2o1qa1	144	Putative acetyl/propionyl-CoA carboxylase subunit	97.55
d2pa7a1	135	dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA {Ane	97.28
d1qwra_	315	Mannose-6-phosphate isomerase ManA {Bacillus subti	97.23
d1zx5a1	299	Putative mannosephosphate isomerase AF0035 {Archae	96.87
d1pmia_	440	Phosphomannose isomerase {Yeast (Candida albicans)	96.74
d1ywka1	260	5-keto-4-deoxyuronate isomerase KduI {Enterococcus	96.11
d1xrua1	277	5-keto-4-deoxyuronate isomerase KduI {Escherichia	95.91
d1vrba1	319	Putative asparaginyl hydroxylase YxbC {Bacillus su	95.53
d1h2ka_	335	Hypoxia-inducible factor HIF ihhibitor (FIH1) {Hum	94.28
d1q3ea_	193	HCN pacemaker channel {Mouse (Mus musculus) [TaxId	94.04
d1ne6a1	136	Regulatory subunit of Protein kinase A {Cow (Bos t	94.02
d1tq5a1	231	Hypothetical protein YhhW {Escherichia coli [TaxId	93.68
d1ylla1	195	Hypothetical protein PA5104 {Pseudomonas aeruginos	93.14
d2ixca1	198	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Mycobac	92.79
d2ixha1	184	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Pseudom	92.68
d1ft9a2	132	CO-sensing protein CooA, N-terminal domain {Rhodos	91.84
d1dzra_	183	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Salmone	91.13
d1zx5a1	299	Putative mannosephosphate isomerase AF0035 {Archae	91.02
d1cx4a2	147	Regulatory subunit of Protein kinase A {Rat (Rattu	90.63
d1ep0a_	183	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeo	90.32
d1o7fa3	124	Regulatory domain of Epac2, domains 1 and 3 {Mouse	90.3
d1tq5a1	231	Hypothetical protein YhhW {Escherichia coli [TaxId	90.26
d1vp6a_	133	Putative ion channel CnbD {Mesorhizobium loti [Tax	89.8
d2c0za1	190	Novobiocin biosynthesis protein NovW {Streptomyces	89.49
d1qwra_	315	Mannose-6-phosphate isomerase ManA {Bacillus subti	89.17
d1wlta1	176	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeo	89.01
d2zcwa2	112	Transcriptional regulator TTHA1359, N-terminal dom	88.38
d1i5za2	132	Catabolite gene activator protein, N-terminal doma	88.02
d1ylla1	195	Hypothetical protein PA5104 {Pseudomonas aeruginos	87.84
d1pmia_	440	Phosphomannose isomerase {Yeast (Candida albicans)	87.77
d1oi6a_	202	dTDP-4-keto-6-deoxy-glucose-5-epimerase EvaD {Amyc	87.68
d1s4ca1	143	Hypothetical protein HI0227 {Haemophilus influenza	87.56
d3dl3a1	96	Tellurite resistance protein B, TehB {Vibrio fisch	87.01
d3bb6a1	109	Uncharacterized protein YeaR {Escherichia coli [Ta	86.88
d1ne6a2	132	Regulatory subunit of Protein kinase A {Cow (Bos t	86.85
d1j1la_	288	Pirin {Human (Homo sapiens) [TaxId: 9606]}	86.74
d1nxma_	194	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Strepto	85.64
d3e5ua2	139	Chlorophenol reduction protein CprK {Desulfitobact	84.56
d1cx4a1	136	Regulatory subunit of Protein kinase A {Rat (Rattu	84.03
d1j1la_	288	Pirin {Human (Homo sapiens) [TaxId: 9606]}	83.9
d2oz6a2	134	Cyclic AMP receptor-like protein Vfr {Pseudomonas	83.68
d1we3o_	96	Chaperonin-10 (GroES) {Thermus thermophilus [TaxId	82.4
d1zyba2	147	Probable transcription regulator BT4300, N-termina	81.42
d1wgpa_	137	Probable cyclic nucleotide-gated ion channel 6 {Th	80.84

>d1o5ua_ b.82.1.8 (A:) Hypothetical protein TM1112 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Hypothetical protein TM1112
domain: Hypothetical protein TM1112
species: Thermotoga maritima [TaxId: 2336]

Probab=99.93  E-value=3.2e-26  Score=133.51  Aligned_cols=66  Identities=41%  Similarity=0.767  Sum_probs=63.7

Q ss_pred             CCcCCceEEEecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEEEe
Q 037642            1 WGCSPGKFQLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFE   67 (74)
Q Consensus         1 W~~~pg~~~~~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~~   67 (74)
                      |+|+||+|+++++.+|+++||+|+++++.++| ++++++|||+++||+|++++|++.+++||+|+++
T Consensus        23 W~~~pg~f~~~y~~~E~~~ileG~v~i~~~~G-~~~~~~aGD~~~~p~G~~~~W~v~e~v~K~yviy   88 (88)
T d1o5ua_          23 WEKEVSEFDWYYDTNETCYILEGKVEVTTEDG-KKYVIEKGDLVTFPKGLRCRWKVLEPVRKHYNLF   88 (88)
T ss_dssp             EEECSEEEEEECSSCEEEEEEEEEEEEEETTC-CEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEC
T ss_pred             EeecCcEEEEEcCccEEEEEEEeEEEEEcCCC-CEEEEeCCCEEEECCCCEEEEEECceEEEEEEeC
Confidence            99999999999999999999999999999998 5799999999999999999999999999999985

>d2pyta1 b.82.1.24 (A:100-227) Ethanolamine utilization protein EutQ {Salmonella typhimurium [TaxId: 90371]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: EutQ-like
domain: Ethanolamine utilization protein EutQ
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.75  E-value=5.3e-18  Score=102.86  Aligned_cols=65  Identities=25%  Similarity=0.331  Sum_probs=61.5

Q ss_pred             CCcCCceEEEecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEEEe
Q 037642            1 WGCSPGKFQLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFE   67 (74)
Q Consensus         1 W~~~pg~~~~~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~~   67 (74)
                      |.++||.+++|.+.+|++|||+|++++.++|  +.+.+++||+++||+|.+|+|+..+..+++|++.
T Consensus        59 ~~~~~g~~~~~~~~~E~~~vl~G~~~~~~~g--~~~~l~~Gd~~~~p~g~~h~~~~~~~~~~~~v~~  123 (128)
T d2pyta1          59 MQWDNAFFPWTLNYDEIDMVLEGELHVRHEG--ETMIAKAGDVMFIPKGSSIEFGTPTSVRFLYVAW  123 (128)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEEEEEEEEETT--EEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEE
T ss_pred             EEECCCccceeCCccEEEEEEEeEEEEEECC--EEEEecCCCEEEECCCCEEEEEeCCCEEEEEEEC
Confidence            5789999999999999999999999999987  5799999999999999999999999999999986

>d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein SPy1581
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.27  E-value=5.2e-11  Score=69.73  Aligned_cols=66  Identities=11%  Similarity=0.156  Sum_probs=56.7

Q ss_pred             CCceE-EEe-cCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEEEecCCC
Q 037642            4 SPGKF-QLK-FDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFESTSS   71 (74)
Q Consensus         4 ~pg~~-~~~-~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~~~~~~   71 (74)
                      +||.- ..| .+.+|++|||+|++.+.+++  +.+.+++||++++|+|..|..+..++.+.+.++..|.|
T Consensus        45 ~~G~~~~~H~h~~~~~~~vl~G~~~~~~~~--~~~~l~~Gd~~~ip~~~~H~~~a~~~~~~l~~vi~pe~  112 (112)
T d1yhfa1          45 DKGQEIGRHSSPGDAMVTILSGLAEITIDQ--ETYRVAEGQTIVMPAGIPHALYAVEAFQMLLVVVKPEA  112 (112)
T ss_dssp             CTTCEEEEECCSSEEEEEEEESEEEEEETT--EEEEEETTCEEEECTTSCEEEEESSCEEEEEEEECSCC
T ss_pred             CCCCCcceEECCCCEEEEEEeCEEEEEEcc--EEEEecCCEEEEcCCCCeEEeEECCCcEEEEEEECCCC
Confidence            45553 333 45799999999999999998  47999999999999999999999999999998888765

>d2b8ma1 b.82.1.18 (A:1-108) Hypothetical protein MJ0764 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: MJ0764-like
domain: Hypothetical protein MJ0764
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.18  E-value=1.1e-10  Score=68.35  Aligned_cols=60  Identities=8%  Similarity=0.231  Sum_probs=49.1

Q ss_pred             EEecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeee-EEEEEEEecCC
Q 037642            9 QLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVA-VDKYYKFESTS   70 (74)
Q Consensus         9 ~~~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~-~~k~y~~~~~~   70 (74)
                      ++| +.+|++|||+|++.+.+++. +.+.+++||++++|+|..|.+...+. -..++++.+|.
T Consensus        42 H~H-~~~e~~~Vl~G~~~~~v~~~-e~~~v~~Gd~i~ip~~~~H~~~n~~~e~l~~l~v~~P~  102 (108)
T d2b8ma1          42 HYS-NSYVHLIIIKGEMTLTLEDQ-EPHNYKEGNIVYVPFNVKMLIQNINSDILEFFVVKAPH  102 (108)
T ss_dssp             EEC-SSCEEEEEEESEEEEEETTS-CCEEEETTCEEEECTTCEEEEECCSSSEEEEEEEECSC
T ss_pred             hcc-cccEEEEEEeeeEEEEEecc-cEEEeecceEeeccCCceEEEEcCCCCcEEEEEEECCC
Confidence            444 57899999999999999986 56899999999999999999997643 34666676654

>d1v70a_ b.82.1.9 (A:) Hypothetical protein TTHA0104 {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TTHA0104
species: Thermus thermophilus [TaxId: 274]

Probab=99.16  E-value=1.3e-10  Score=66.50  Aligned_cols=63  Identities=16%  Similarity=0.190  Sum_probs=49.5

Q ss_pred             CCceE-EE--ecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEee--eEEEEEEEecC
Q 037642            4 SPGKF-QL--KFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSV--AVDKYYKFEST   69 (74)
Q Consensus         4 ~pg~~-~~--~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~--~~~k~y~~~~~   69 (74)
                      +||.- ..  |...+|++|||+|++.+.+++  +.+.+++||++++|+|..|.+...+  ++ ++.++.+|
T Consensus        36 ~PG~~~~~H~H~~~~e~~~vl~G~~~~~~~~--~~~~l~~Gd~~~~p~~~~H~~~n~g~~~~-~~l~v~~P  103 (105)
T d1v70a_          36 LPGQAQKVHVHEGSDKVYYALEGEVVVRVGE--EEALLAPGMAAFAPAGAPHGVRNESASPA-LLLVVTAP  103 (105)
T ss_dssp             CTTCEEEEECCSSCEEEEEEEESCEEEEETT--EEEEECTTCEEEECTTSCEEEECCSSSCE-EEEEEEES
T ss_pred             CCCCCCcceECCCCeEEEEEEeeEEEEEEee--eEEEecceEEEEeCCCCEEEeEECCCCCE-EEEEEECC
Confidence            46543 34  445689999999999999988  4799999999999999999999764  44 44556554

>d1o4ta_ b.82.1.9 (A:) Hypothetical protein TM1287 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TM1287
species: Thermotoga maritima [TaxId: 2336]

Probab=99.11  E-value=3e-10  Score=66.65  Aligned_cols=54  Identities=24%  Similarity=0.244  Sum_probs=45.0

Q ss_pred             CCceE---EEecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeee
Q 037642            4 SPGKF---QLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVA   59 (74)
Q Consensus         4 ~pg~~---~~~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~   59 (74)
                      +||.-   ++|...+|++|||+|++.+..++  +...++|||++++|+|..|.+.-.+.
T Consensus        47 ~PG~~~~~H~H~~~~E~~~vl~G~~~~~~~~--~~~~l~~Gd~~~ip~g~~H~~~N~g~  103 (115)
T d1o4ta_          47 PPGSSVGLHKHEGEFEIYYILLGEGVFHDNG--KDVPIKAGDVCFTDSGESHSIENTGN  103 (115)
T ss_dssp             CTTCEEEEEECCSEEEEEEEEESEEEEEETT--EEEEEETTEEEEECTTCEEEEECCSS
T ss_pred             CCCCCcCCEECCCCcEEEEEEECcceEEEcC--eeEEeeccEEEEECCCCeEEEEECCC
Confidence            45553   44555689999999999999988  47999999999999999999986644

>d1y9qa2 b.82.1.15 (A:83-181) Probable transcriptional regulator VC1968, C-terminal domain {Vibrio cholerae [TaxId: 666]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Probable transcriptional regulator VC1968, C-terminal domain
domain: Probable transcriptional regulator VC1968, C-terminal domain
species: Vibrio cholerae [TaxId: 666]

Probab=99.07  E-value=1e-09  Score=62.93  Aligned_cols=56  Identities=14%  Similarity=0.181  Sum_probs=46.8

Q ss_pred             cCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeee-EEEEEEEecC
Q 037642           12 FDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVA-VDKYYKFEST   69 (74)
Q Consensus        12 ~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~-~~k~y~~~~~   69 (74)
                      ....|++|||+|++++.+++  +.+.|++||++.||++..|.|...+. -..+.+|..|
T Consensus        42 h~~~E~~~Vl~G~~~~~~~~--~~~~l~~GD~~~~~~~~~H~~~n~~~~~~~~~vi~~P   98 (99)
T d1y9qa2          42 LGVIEYIHVLEGIMKVFFDE--QWHELQQGEHIRFFSDQPHGYAAVTEKAVFQNIVAYP   98 (99)
T ss_dssp             TTCEEEEEEEESCEEEEETT--EEEEECTTCEEEEECSSSEEEEESSSCEEEEEEEECC
T ss_pred             CCcEEEEEEEcCceEEEecc--eEEEecCCCEEEECCCCeEEEEeCCccCEEEEEEeCC
Confidence            35689999999999999988  57999999999999999999998864 3344456554

>d2oyza1 b.82.1.22 (A:2-94) Uncharacterized protein VPA0057 {Vibrio parahaemolyticus [TaxId: 670]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: VPA0057-like
domain: Uncharacterized protein VPA0057
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.98  E-value=2.7e-09  Score=61.59  Aligned_cols=62  Identities=26%  Similarity=0.450  Sum_probs=56.4

Q ss_pred             CCceEEEecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEEEe
Q 037642            4 SPGKFQLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFE   67 (74)
Q Consensus         4 ~pg~~~~~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~~   67 (74)
                      .||.|.+.+...|++-|++|.+.+.+++..+...+++|+.|-+|++..+..++.+..  .|++.
T Consensus        30 ~pGeY~F~T~~~E~MeivsG~l~V~lpg~~ew~~~~~G~sF~Vpans~F~ikv~~~~--~Y~C~   91 (93)
T d2oyza1          30 LPGEYTFGTQAPERMTVVKGALVVKRVGEADWTTYSSGESFDVEGNSSFELQVKDAT--AYLCE   91 (93)
T ss_dssp             CSEEEEEEESSCEEEEEEESEEEEEETTCSSCEEEETTCEEEECSSEEEEEEESSCE--EEEEE
T ss_pred             eccEEEEcCCCCEEEEEEeeEEEEECCCCcccEEeCCCCeEEECCCCEEEEEECcce--eeEEE
Confidence            499999999999999999999999999877789999999999999999999998875  36653

>d1vj2a_ b.82.1.10 (A:) Hypothetical protein TM1459 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1459-like
domain: Hypothetical protein TM1459
species: Thermotoga maritima [TaxId: 2336]

Probab=98.98  E-value=1.1e-09  Score=64.06  Aligned_cols=62  Identities=16%  Similarity=0.193  Sum_probs=48.4

Q ss_pred             CCceE-EEe-cCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEee--eEEEEEEEe
Q 037642            4 SPGKF-QLK-FDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSV--AVDKYYKFE   67 (74)
Q Consensus         4 ~pg~~-~~~-~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~--~~~k~y~~~   67 (74)
                      +||.. ..| .+.+|++|||+|++.+.+++  +.+.+++||++++|+|..|.+...+  +++-+.++.
T Consensus        44 ~pG~~~~~H~H~~~e~~~vl~G~~~~~~~~--~~~~l~~Gd~~~ip~~~~H~~~n~~~~~~~~l~iip  109 (114)
T d1vj2a_          44 EPGGLIDRHSHPWEHEIFVLKGKLTVLKEQ--GEETVEEGFYIFVEPNEIHGFRNDTDSEVEFLCLIP  109 (114)
T ss_dssp             EEEEEEEEECCSSCEEEEEEESEEEEECSS--CEEEEETTEEEEECTTCCEEEECCSSSCEEEEEEEE
T ss_pred             CCCCCCCceECCCcEEEEEEEceeEEEEee--eeeEEecCeEEEEcCCCeEEEEeCCCCCEEEEEEEC
Confidence            45553 333 35689999999999999988  4799999999999999999999754  555444443

>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Hypothetical protein YxaG
species: Bacillus subtilis [TaxId: 1423]

Probab=98.96  E-value=2.1e-09  Score=72.27  Aligned_cols=60  Identities=17%  Similarity=0.346  Sum_probs=51.5

Q ss_pred             EEecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEEEecCC
Q 037642            9 QLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFESTS   70 (74)
Q Consensus         9 ~~~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~~~~~   70 (74)
                      ++|...+|++|||+|++++.+++  +.+.+++||++++|+|..|.+...+.-.+++.+..++
T Consensus       230 H~H~~~~e~~~vl~G~~~~~v~~--~~~~~~~Gd~~~vP~g~~H~~~~~~~~~~~l~~~~p~  289 (330)
T d1y3ta1         230 HYHEYHTETFYCLEGQMTMWTDG--QEIQLNPGDFLHVPANTVHSYRLDSHYTKMVGVLVPG  289 (330)
T ss_dssp             EECSSCEEEEEEEESCEEEEETT--EEEEECTTCEEEECTTCCEEEEECSSSEEEEEEEESS
T ss_pred             cCcCCccEEEEEEecEEEEEECC--EEEEeCCCCEEEECcCCcEEeEeCCCCeEEEEEECCc
Confidence            56667899999999999999988  5799999999999999999999876656666666654

>d1juha_ b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergillus japonicus [TaxId: 34381]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Quercetin 2,3-dioxygenase
species: Aspergillus japonicus [TaxId: 34381]

Probab=98.92  E-value=1.8e-09  Score=73.43  Aligned_cols=59  Identities=22%  Similarity=0.278  Sum_probs=50.4

Q ss_pred             EEecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEEEec
Q 037642            9 QLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFES   68 (74)
Q Consensus         9 ~~~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~~~   68 (74)
                      ++|.+.+|++|||+|++.+++.++ +...+++||++++|+|..+.+.......+++++..
T Consensus       265 ~~~~~~~e~~~vleG~~~~~i~~~-~~~~l~~GD~~~vP~g~~h~~~~~~~~~~~~~~~~  323 (348)
T d1juha_         265 TWSFPGACAFQVQEGRVVVQIGDY-AATELGSGDVAFIPGGVEFKYYSEAYFSKVLFVSS  323 (348)
T ss_dssp             CBCCSSCEEEEEEESCEEEEETTS-CCEEECTTCEEEECTTCCEEEEESSSSEEEEEEEE
T ss_pred             cccCCCCEEEEEEeceEEEEeCCc-ceEEecCCCEEEECCCCcEEEEeCCCCcEEEEEEc
Confidence            456778999999999999999776 57899999999999999999988887666666554

>d1rc6a_ b.82.1.11 (A:) Hypothetical protein YlbA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein YlbA
species: Escherichia coli [TaxId: 562]

Probab=98.90  E-value=4.2e-09  Score=68.90  Aligned_cols=63  Identities=16%  Similarity=0.172  Sum_probs=49.7

Q ss_pred             CCceE---EEecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEE-EEEEEec
Q 037642            4 SPGKF---QLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVD-KYYKFES   68 (74)
Q Consensus         4 ~pg~~---~~~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~-k~y~~~~   68 (74)
                      +||..   ..+...+|++|||+|++.+.+++  +.+.+++||+++||+|.++.+...++-. ..|++++
T Consensus       179 ~PG~~~~~~h~h~~ee~~~vl~G~g~~~i~~--~~~~~~~GD~i~~~~~~ph~~~~~g~~~~~~~~~~~  245 (253)
T d1rc6a_         179 APGASHGYIETHVQEHGAYILSGQGVYNLDN--NWIPVKKGDYIFMGAYSLQAGYGVGRGEAFSYIYSK  245 (253)
T ss_dssp             CTTCCBEEEEEESSCEEEEEEESEEEEESSS--CEEEEETTCEEEECSSEEEEEEEC----CEEEEEEE
T ss_pred             CCCceEeEEEeCCceEEEEEeCCEEEEEECC--EEEEecCCCEEEECCCCCEeeeeCCCCCcEEEEEEE
Confidence            56642   33457899999999999999998  4799999999999999999999987533 5677765

>d1sfna_ b.82.1.11 (A:) Hypothetical protein DR1152 {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein DR1152
species: Deinococcus radiodurans [TaxId: 1299]

Probab=98.86  E-value=5.2e-09  Score=68.41  Aligned_cols=63  Identities=14%  Similarity=0.089  Sum_probs=52.8

Q ss_pred             CCceE-E--EecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEEEec
Q 037642            4 SPGKF-Q--LKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFES   68 (74)
Q Consensus         4 ~pg~~-~--~~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~~~   68 (74)
                      +||.. .  .+...+|.+|||+|++.+.+++  +.+.+++||++++|++..|.+...++-...|++.+
T Consensus       173 ~PG~~~~~~~~h~~ee~~~vl~G~~~~~i~~--~~~~v~~GD~i~~~~~~~H~~~n~g~~~~~~l~~k  238 (245)
T d1sfna_         173 APGASLPYAEVHYMEHGLLMLEGEGLYKLEE--NYYPVTAGDIIWMGAHCPQWYGALGRNWSKYLLYK  238 (245)
T ss_dssp             CTTCBCSSCBCCSSCEEEEEEECEEEEEETT--EEEEEETTCEEEECTTCCEEEEEESSSCEEEEEEE
T ss_pred             ccCceeeceecCCceEEEEEeCCEEEEEECC--EEEEecCCCEEEECCCCCEeeEeCCCCCEEEEEEe
Confidence            56664 2  3356789999999999999998  57999999999999999999999887666777654

>d2f4pa1 b.82.1.9 (A:2-135) Hypothetical protein TM1010 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TM1010
species: Thermotoga maritima [TaxId: 2336]

Probab=98.86  E-value=6.1e-09  Score=63.23  Aligned_cols=60  Identities=17%  Similarity=0.157  Sum_probs=46.9

Q ss_pred             CCceE---EEecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEE
Q 037642            4 SPGKF---QLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYK   65 (74)
Q Consensus         4 ~pg~~---~~~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~   65 (74)
                      +||.-   +.| +..|++|||+|++++..+++ +.+.++|||++++|+|..|........-..|+
T Consensus        43 ~PG~~~~~H~H-~~~q~~~Vl~G~~~~~~~g~-~~~~~~~Gd~v~ippg~~H~~~a~~~~~~~~l  105 (134)
T d2f4pa1          43 EPGARTHWHSH-PGGQILIVTRGKGFYQERGK-PARILKKGDVVEIPPNVVHWHGAAPDEELVHI  105 (134)
T ss_dssp             CTTCEECSEEC-TTCEEEEEEEEEEEEEETTS-CCEEEETTCEEEECTTCCEEEEEBTTBCEEEE
T ss_pred             CCCCcCccccC-CCCEEEEEEeCEEEEEECCc-ceEEEcCCCeEEECCCCceECccCCCCcEEEE
Confidence            45553   444 56899999999999999887 57899999999999999998776655434443

>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Hypothetical protein YxaG
species: Bacillus subtilis [TaxId: 1423]

Probab=98.84  E-value=1.1e-08  Score=68.70  Aligned_cols=61  Identities=20%  Similarity=0.379  Sum_probs=49.2

Q ss_pred             CCceE---EEecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEEE
Q 037642            4 SPGKF---QLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKF   66 (74)
Q Consensus         4 ~pg~~---~~~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~   66 (74)
                      .||..   ++|...+|++|||+|++.+.+++  +++.+++||++++|+|..|.+...+.-.++.++
T Consensus        50 ~pG~~~~~h~H~~~~e~~~vl~G~~~~~~~~--~~~~l~~Gd~~~~p~~~~H~~~n~~~~~~~l~~  113 (330)
T d1y3ta1          50 GKGDAFPLHVHKDTHEGILVLDGKLELTLDG--ERYLLISGDYANIPAGTPHSYRMQSHRTRLVSY  113 (330)
T ss_dssp             CTTCEEEEEECTTCCEEEEEEESCEEEEETT--EEEEECTTCEEEECTTCCEEEEECSTTEEEEEE
T ss_pred             CCCCcCCcccCCCceEEEEEeCCEEEEEECC--EEEEEcCCCEEEeCCCCeEEEEEcCCCeEEEEE
Confidence            45553   45666799999999999999987  579999999999999999999987653333333

>d1juha_ b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergillus japonicus [TaxId: 34381]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Quercetin 2,3-dioxygenase
species: Aspergillus japonicus [TaxId: 34381]

Probab=98.84  E-value=5.7e-09  Score=70.93  Aligned_cols=61  Identities=13%  Similarity=0.267  Sum_probs=49.7

Q ss_pred             EEecCceEEEEEEecEEEEEeCC---CceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEEEecC
Q 037642            9 QLKFDAEETCYLLKGKVKVYPKG---SSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFEST   69 (74)
Q Consensus         9 ~~~~~~~E~~~vleG~~~~~~~~---g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~~~~   69 (74)
                      ++|...+|++|||+|++++.+++   +.+...+++||+++||+|..|.++..++-.++.++..+
T Consensus        64 H~H~~~~E~~~vl~G~~~~~~~~~~~~~~~~~l~~GD~~~~P~g~~H~~~n~~~~~~~l~v~~p  127 (348)
T d1juha_          64 HIHQKHYENFYCNKGSFQLWAQSGNETQQTRVLSSGDYGSVPRNVTHTFQIQDPDTEMTGVIVP  127 (348)
T ss_dssp             EECSSCEEEEEEEESEEEEEEEETTSCCEEEEEETTCEEEECTTEEEEEEECSTTEEEEEEEES
T ss_pred             cccccceEEEEEEeeEEEEEEeccCCceEEEEeCCCCEEEECCCCeEeeEeCCCCcEEEEEECC
Confidence            67788999999999999998743   23578999999999999999999988865455555443

>d1fxza2 b.82.1.2 (A:297-470) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), proglycinin [TaxId: 3847]

Probab=98.82  E-value=2.5e-08  Score=62.44  Aligned_cols=64  Identities=14%  Similarity=0.289  Sum_probs=48.0

Q ss_pred             CCceE---EEecCceEEEEEEecEEEEEeC--CCceEE--EECCCcEEEEcCCCeEEEEEeeeEEEEEEEe
Q 037642            4 SPGKF---QLKFDAEETCYLLKGKVKVYPK--GSSDWV--EFGAGDLVTIPKGLSCTWDVSVAVDKYYKFE   67 (74)
Q Consensus         4 ~pg~~---~~~~~~~E~~~vleG~~~~~~~--~g~e~~--~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~~   67 (74)
                      +||..   +||.+.+|+.||++|+++++.-  ++.+.+  ++++||+++||+|..+...-.+.-..+..+.
T Consensus        50 ~pga~~~PH~H~~A~ei~yV~~G~~~v~~v~~~g~~~~~~~l~~Gdv~vvP~G~~h~~~n~~~~~~~v~~~  120 (174)
T d1fxza2          50 RKNAMFVPHYNLNANSIIYALNGRALIQVVNCNGERVFDGELQEGRVLIVPQNFVVAARSQSDNFEYVSFK  120 (174)
T ss_dssp             CTTCEEEEEEETTCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEEEECTTCEEEEEECSTTEEEEEEE
T ss_pred             cCCCEeCCccCCCCCEEEEEEecceEEEEecCCCceeEEEEEcCCcEEEECCCCEEEEEeCCCCeEEEEEE
Confidence            46665   6788999999999999999863  332333  4999999999999999887766533333343

>d1dgwa_ b.82.1.2 (A:) Seed storage 7S protein {Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]

Probab=98.82  E-value=1.3e-08  Score=64.02  Aligned_cols=55  Identities=16%  Similarity=0.233  Sum_probs=45.3

Q ss_pred             cCCceE--EEecCceEEEEEEecEEEEEe--CCCceEEEECCCcEEEEcCCCeEEEEEe
Q 037642            3 CSPGKF--QLKFDAEETCYLLKGKVKVYP--KGSSDWVEFGAGDLVTIPKGLSCTWDVS   57 (74)
Q Consensus         3 ~~pg~~--~~~~~~~E~~~vleG~~~~~~--~~g~e~~~~~~GD~v~~p~g~~~~~~~~   57 (74)
                      .+||..  +.|.+.+|+.||++|++++++  .++.++..+++||+++||+|..+.+.-.
T Consensus        48 i~p~~l~~Ph~~~a~ev~yV~~G~g~v~~v~~~~~~~~~l~~GDv~~iP~G~~h~~~N~  106 (178)
T d1dgwa_          48 SKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRDTYKLDQGDAIKIQAGTPFYLINP  106 (178)
T ss_dssp             ECTTEEEEEEEESSEEEEEEEESEEEEEEEETTEEEEEEEETTEEEEECTTCCEEEEEC
T ss_pred             ecCCcccccccCCCCEEEEEEEeEEEEEEecCCceEEEEecCCCEEEECCCCeEEEEEC
Confidence            367776  346789999999999998886  4444678899999999999999988754

>d1lr5a_ b.82.1.2 (A:) Auxin binding protein {Maize (Zea mays) [TaxId: 4577]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Auxin binding protein
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.81  E-value=2.9e-08  Score=61.14  Aligned_cols=63  Identities=24%  Similarity=0.180  Sum_probs=47.6

Q ss_pred             CCceE---EEecCceEEEEEEecEEEEEeCCCc-------eEEEECCCcEEEEcCCCeEEEEEe---eeEEEEEEEe
Q 037642            4 SPGKF---QLKFDAEETCYLLKGKVKVYPKGSS-------DWVEFGAGDLVTIPKGLSCTWDVS---VAVDKYYKFE   67 (74)
Q Consensus         4 ~pg~~---~~~~~~~E~~~vleG~~~~~~~~g~-------e~~~~~~GD~v~~p~g~~~~~~~~---~~~~k~y~~~   67 (74)
                      .||..   +. .+.+|++|||+|++.+.+++..       +.+.++|||++++|+|..|.+.-.   ++++-+-++.
T Consensus        49 ~PG~~~~~H~-H~~~e~~~Vl~G~g~~~i~~~~~~~~~~~~~~~l~~Gd~~~iP~~~~H~~~N~g~~E~l~~l~i~~  124 (160)
T d1lr5a_          49 SPGQRTPIHR-HSCEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTFSIPVNDPHQVWNSDEHEDLQVLVIIS  124 (160)
T ss_dssp             CTTCBCCEEE-ESSCEEEEEEECCEEEEECCSSSSSCCSCEEEEECTTEEEEECTTCCEEEECCCSSSCEEEEEEEE
T ss_pred             CCCcccccee-ccccEEEEEEeeeEEEEECCccccccccceEEEecCCCEEEeCCCCcEEEEECCCCCCEEEEEEEC
Confidence            45553   33 4678999999999999998732       468999999999999999999954   3454333333

>d1uika1 b.82.1.2 (A:148-350) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]

Probab=98.80  E-value=1.6e-08  Score=64.87  Aligned_cols=57  Identities=18%  Similarity=0.238  Sum_probs=46.1

Q ss_pred             cCCceE--EEecCceEEEEEEecEEEEEe--CCCceEEEECCCcEEEEcCCCeEEEEEeee
Q 037642            3 CSPGKF--QLKFDAEETCYLLKGKVKVYP--KGSSDWVEFGAGDLVTIPKGLSCTWDVSVA   59 (74)
Q Consensus         3 ~~pg~~--~~~~~~~E~~~vleG~~~~~~--~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~   59 (74)
                      .+|+..  +.+.+.+|++||++|++.+.+  +++.++..+++||+++||+|..+.+.-...
T Consensus        47 i~p~~l~~Ph~~~a~ev~yV~~G~g~~~~v~~~~~~~~~l~~GDv~~iP~G~~~~~~N~~~  107 (203)
T d1uika1          47 SKPNTLLLPHHADADYLIVILNGTAILTLVNNDDRDSYNLQSGDALRVPAGTTYYVVNPDN  107 (203)
T ss_dssp             ECSSEEEEEEEESEEEEEEEEESEEEEEEECSSCEEEEEEETTEEEEECTTCEEEEEECCS
T ss_pred             ecCCCccccccCCCcEEEEEEEEEEEEEEEeCCCeEEEEecCCCEEEECCCCeEEEEECCC
Confidence            467775  345689999999999998876  444467899999999999999998886553

>d1uija1 b.82.1.2 (A:6-175) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]

Probab=98.80  E-value=1.9e-08  Score=62.80  Aligned_cols=55  Identities=20%  Similarity=0.270  Sum_probs=45.3

Q ss_pred             CCceE--EEecCceEEEEEEecEEEEEe--CCCceEEEECCCcEEEEcCCCeEEEEEee
Q 037642            4 SPGKF--QLKFDAEETCYLLKGKVKVYP--KGSSDWVEFGAGDLVTIPKGLSCTWDVSV   58 (74)
Q Consensus         4 ~pg~~--~~~~~~~E~~~vleG~~~~~~--~~g~e~~~~~~GD~v~~p~g~~~~~~~~~   58 (74)
                      +||..  +.|.+.+|++||++|++++.+  .++.++..+++||+++||+|..+...-..
T Consensus        52 ~p~~~~~Ph~~~a~ei~yV~~G~g~v~~v~~~~~~~~~l~~GDv~~vP~G~~h~~~n~~  110 (170)
T d1uija1          52 KPNTILLPHHADADFLLFVLSGRAILTLVNNDDRDSYNLHPGDAQRIPAGTTYYLVNPH  110 (170)
T ss_dssp             CTTEEEEEEEESEEEEEEEEESCEEEEEECSSCEEEEEECTTEEEEECTTCEEEEEECC
T ss_pred             cCCcccccccCCCCEEEEEEEEEEEEEEEeCCCcEEEEecCCcEEEECCCCeEEEEEcC
Confidence            57775  345789999999999999876  34446789999999999999999888764

>d2bnma2 b.82.1.10 (A:77-198) Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain {Streptomyces wedmorensis [TaxId: 43759]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1459-like
domain: Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain
species: Streptomyces wedmorensis [TaxId: 43759]

Probab=98.80  E-value=1.8e-08  Score=59.81  Aligned_cols=47  Identities=9%  Similarity=0.174  Sum_probs=40.2

Q ss_pred             ecCceEEEEEEecEEEEEeCCC--ceEEEECCCcEEEEcCCCeEEEEEe
Q 037642           11 KFDAEETCYLLKGKVKVYPKGS--SDWVEFGAGDLVTIPKGLSCTWDVS   57 (74)
Q Consensus        11 ~~~~~E~~~vleG~~~~~~~~g--~e~~~~~~GD~v~~p~g~~~~~~~~   57 (74)
                      +...+|++|||+|++++...+.  .+++.++|||.++||++.+|.|.-.
T Consensus        61 ~H~~eE~~yVl~G~~~~~~g~~~~~~~~~l~~GDsi~~~~~~pH~~~n~  109 (122)
T d2bnma2          61 GHAGNEFLFVLEGEIHMKWGDKENPKEALLPTGASMFVEEHVPHAFTAA  109 (122)
T ss_dssp             CCSSCEEEEEEESCEEEEESCTTSCEEEEECTTCEEEECTTCCEEEEES
T ss_pred             CcccEEEEEEEEEEEEEEEecccCCEEEEEccCcEEEeCCCCCEEEEcC
Confidence            3457899999999999998531  2579999999999999999999874

>d1od5a2 b.82.1.2 (A:321-493) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]

Probab=98.79  E-value=4.7e-08  Score=61.25  Aligned_cols=64  Identities=17%  Similarity=0.252  Sum_probs=47.5

Q ss_pred             CCceE---EEecCceEEEEEEecEEEEEeC--CCceE--EEECCCcEEEEcCCCeEEEEEeeeEEEEEEEe
Q 037642            4 SPGKF---QLKFDAEETCYLLKGKVKVYPK--GSSDW--VEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFE   67 (74)
Q Consensus         4 ~pg~~---~~~~~~~E~~~vleG~~~~~~~--~g~e~--~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~~   67 (74)
                      +||..   +||.+.+|+.||++|++++.+-  ++.+.  .++++||+++||+|..+.....+.-..+..+.
T Consensus        55 ~pga~~~PH~H~~A~ei~yV~~G~~~v~~v~~~~~~~~~~~l~~Gdv~~iP~G~~h~~~n~~~~~~~v~~~  125 (173)
T d1od5a2          55 YRNGIYSPHWNLNANSVIYVTRGKGRVRVVNCQGNAVFDGELRRGQLLVVPQNFVVAEQGGEQGLEYVVFK  125 (173)
T ss_dssp             CTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEE
T ss_pred             cCCcEecCccCCCCcEEEEEEecceEEEEEeCCCceEEeEEecCCcEEEECCCCEEEEEcCCCceEEEEee
Confidence            46665   6788999999999999999853  33233  35999999999999999776655543333333

>d1sefa_ b.82.1.11 (A:) Hypothetical protein EF2996 {Enterococcus faecalis [TaxId: 1351]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein EF2996
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.79  E-value=1.1e-08  Score=66.84  Aligned_cols=63  Identities=16%  Similarity=0.222  Sum_probs=49.1

Q ss_pred             CCceE---EEecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeee-EEEEEEEec
Q 037642            4 SPGKF---QLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVA-VDKYYKFES   68 (74)
Q Consensus         4 ~pg~~---~~~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~-~~k~y~~~~   68 (74)
                      +||..   ..+...+|++|||+|++.+.+++  +.+.+++||+++||+|.+|...-.++ --..|++.+
T Consensus       176 ~PG~~~~~~h~h~~ee~~~vl~G~~~~~~~~--~~~~~~~GD~i~~~~~~pH~~~n~G~~~~~~~l~~k  242 (250)
T d1sefa_         176 EPGASHAYIETHVQEHGAYLISGQGMYNLDN--EWYPVEKGDYIFMSAYVPQAAYAVGREEPLMYVYSK  242 (250)
T ss_dssp             CTTCBCSSCBCCSCCEEEEEEECEEEEEETT--EEEEEETTCEEEECTTCCEEEEEECSSSCEEEEEEE
T ss_pred             CCCCccCccCccCceEEEEEeCCEEEEEECC--EEEEecCCCEEEECCCCCEEeEcCCCCCcEEEEEEe
Confidence            45554   23456799999999999999998  57999999999999999999887652 234455543

>d1x82a_ b.82.1.7 (A:) Glucose-6-phosphate isomerase, GPI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Glucose-6-phosphate isomerase, GPI
domain: Glucose-6-phosphate isomerase, GPI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.74  E-value=3.3e-08  Score=62.72  Aligned_cols=61  Identities=20%  Similarity=0.253  Sum_probs=45.0

Q ss_pred             EEEecCceEEEEEEecEEEEEeCCC---ceEEEECCCcEEEEcCCCeEEEEEee--eEEEEEEEec
Q 037642            8 FQLKFDAEETCYLLKGKVKVYPKGS---SDWVEFGAGDLVTIPKGLSCTWDVSV--AVDKYYKFES   68 (74)
Q Consensus         8 ~~~~~~~~E~~~vleG~~~~~~~~g---~e~~~~~~GD~v~~p~g~~~~~~~~~--~~~k~y~~~~   68 (74)
                      |+.|.+..|++|||+|++.+.+.+.   ...+.++|||+++||+|..|...-.+  ++..++++.+
T Consensus        90 ~H~h~~~~E~~~vl~G~g~~~l~~~~~~~~~~~v~~Gd~v~iP~g~~H~~~N~Gde~L~~l~v~~~  155 (190)
T d1x82a_          90 FHAKLDRAEVYVALKGKGGMLLQTPEGDAKWISMEPGTVVYVPPYWAHRTVNIGDEPFIFLAIYPA  155 (190)
T ss_dssp             BCSSTTCCEEEEEEESCEEEEEECTTCCEEEEEECTTCEEEECTTCEEEEEECSSSCEEEEEEEET
T ss_pred             ECCCCCCeEEEEEEEeEEEEEEeeccCceEEEEecCCcEEEEecceeEEeEECCCCCEEEEEEECC
Confidence            3334467899999999999987442   14578999999999999999987554  4544444433

>d1sfna_ b.82.1.11 (A:) Hypothetical protein DR1152 {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein DR1152
species: Deinococcus radiodurans [TaxId: 1299]

Probab=98.72  E-value=5.6e-08  Score=63.39  Aligned_cols=60  Identities=17%  Similarity=0.154  Sum_probs=48.7

Q ss_pred             CCceEEEecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEE
Q 037642            4 SPGKFQLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYK   65 (74)
Q Consensus         4 ~pg~~~~~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~   65 (74)
                      .||.-.-....++++|||+|++++++++  +...+++||.+++|+|..+++...+.-...++
T Consensus        58 ~pGg~~~~~~~E~~~~Vl~G~~~~~~~g--~~~~l~~G~~~~~P~g~~h~~~n~~~~~~~~~  117 (245)
T d1sfna_          58 PAGAQATESVYQRFAFVLSGEVDVAVGG--ETRTLREYDYVYLPAGEKHMLTAKTDARVSVF  117 (245)
T ss_dssp             CTTCEEECCSSEEEEEEEEEEEEEECSS--CEEEECTTEEEEECTTCCCEEEEEEEEEEEEE
T ss_pred             CCCCCCCCCCccEEEEEEECEEEEEECC--EEEEecCCCEEEeCCCCcEEEEeCCCccEEEE
Confidence            3554443445799999999999999987  47999999999999999999998877554444

>d1uika2 b.82.1.2 (A:351-535) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]

Probab=98.71  E-value=9.9e-08  Score=60.06  Aligned_cols=63  Identities=14%  Similarity=0.203  Sum_probs=49.7

Q ss_pred             CCceE---EEecCceEEEEEEecEEEEEeCCC-----------------ceEEEECCCcEEEEcCCCeEEEEEeeeEEEE
Q 037642            4 SPGKF---QLKFDAEETCYLLKGKVKVYPKGS-----------------SDWVEFGAGDLVTIPKGLSCTWDVSVAVDKY   63 (74)
Q Consensus         4 ~pg~~---~~~~~~~E~~~vleG~~~~~~~~g-----------------~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~   63 (74)
                      +|+..   +||.+++|+.||++|++.+.+-+.                 ....+|++||+++||+|+.+.+.-.+....+
T Consensus        50 ~p~~~~~Ph~h~~A~~i~~V~~G~g~v~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~GDv~viP~G~~~~~~n~~d~~~v  129 (185)
T d1uika2          50 NEGALFLPHFNSKAIVVLVINEGEANIELVGIKEQQQRQQQEEQPLEVRKYRAELSEQDIFVIPAGYPVVVNATSDLNFF  129 (185)
T ss_dssp             CTTEEEEEEEESSCEEEEEEEESCEEEEEEEC------------CBCCEEEEEEECTTCEEEECTTCCEEEEESSSEEEE
T ss_pred             CCCceeeeeecCCCCEEEEEEeeEEEEEEEccCccchhhccccccCcceeEEEEecCCcEEEECCCCEEEEEcCCCccEE
Confidence            46665   577889999999999988876421                 0245799999999999999999988887666


Q ss_pred             EEE
Q 037642           64 YKF   66 (74)
Q Consensus        64 y~~   66 (74)
                      ++.
T Consensus       130 ~~~  132 (185)
T d1uika2         130 AFG  132 (185)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            653

>d1sq4a_ b.82.1.11 (A:) Glyoxylate-induced protein PA1140 {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Glyoxylate-induced protein PA1140
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.70  E-value=1.9e-08  Score=66.90  Aligned_cols=54  Identities=24%  Similarity=0.229  Sum_probs=48.1

Q ss_pred             CceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEEEec
Q 037642           13 DAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFES   68 (74)
Q Consensus        13 ~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~~~   68 (74)
                      ..+|++|||+|++.+.+++  +.+.+++||+++||++..+.+...++-...|++.+
T Consensus       209 ~~ee~~~vl~G~~~~~~~~--~~~~v~~GD~i~~~~~~ph~~~n~g~~p~~yl~~k  262 (273)
T d1sq4a_         209 VMEHGLYVLEGKAVYRLNQ--DWVEVEAGDFMWLRAFCPQACYSGGPGRFRYLLYK  262 (273)
T ss_dssp             SEEEEEEEEECEEEEEETT--EEEEEETTCEEEEEESCCEEEECCSSSCEEEEEEE
T ss_pred             ccceEEEEEccEEEEEECC--EEEEecCCCEEEECCCCCEEeEeCCCCCEEEEEEE
Confidence            4689999999999999988  57999999999999999999999887666777654

>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Oxalate decarboxylase OxdC (YvrK)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.66  E-value=1.1e-07  Score=65.58  Aligned_cols=65  Identities=17%  Similarity=0.237  Sum_probs=48.3

Q ss_pred             CCceE---EEecCceEEEEEEecEEEEEeCC--C-ceEEEECCCcEEEEcCCCeEEEEEee--eEEEEEEEec
Q 037642            4 SPGKF---QLKFDAEETCYLLKGKVKVYPKG--S-SDWVEFGAGDLVTIPKGLSCTWDVSV--AVDKYYKFES   68 (74)
Q Consensus         4 ~pg~~---~~~~~~~E~~~vleG~~~~~~~~--g-~e~~~~~~GD~v~~p~g~~~~~~~~~--~~~k~y~~~~   68 (74)
                      +||..   +||...+|+.|||+|++++++.+  + ..+.++++||+++||+|..|..+-.+  +++-+.++.+
T Consensus       258 ~PG~~~~~H~Hp~a~E~~yvl~G~g~v~v~~~~g~~~t~~l~~GDv~~iP~g~~H~i~N~g~e~l~~l~vf~s  330 (372)
T d1j58a_         258 EPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFNYQAGDVGYVPFAMGHYVENIGDEPLVFLEIFKD  330 (372)
T ss_dssp             CTTCEEEEEECSSSCEEEEEEESEEEEEEEEETTEEEEEEEESSCEEEECTTCBEEEEECSSSCEEEEEEESS
T ss_pred             CCCcccCCCCCCCCcEEEEEEECeEEEEEEcCCCceEEEEecCCcEEEECCCCeEEEEECCCCCEEEEEEECC
Confidence            46664   57777899999999999987633  2 23578999999999999999987654  4544444443

>d2phla2 b.82.1.2 (A:220-381) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]

Probab=98.66  E-value=1.1e-07  Score=58.95  Aligned_cols=62  Identities=15%  Similarity=0.114  Sum_probs=48.8

Q ss_pred             CCceE---EEecCceEEEEEEecEEEEEeC--CCce--------EEEECCCcEEEEcCCCeEEEEEeeeEEEEEE
Q 037642            4 SPGKF---QLKFDAEETCYLLKGKVKVYPK--GSSD--------WVEFGAGDLVTIPKGLSCTWDVSVAVDKYYK   65 (74)
Q Consensus         4 ~pg~~---~~~~~~~E~~~vleG~~~~~~~--~g~e--------~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~   65 (74)
                      +||..   +||.+++|++||++|++++.+-  ++..        ..+|++||+++||+|..+...-.++..++.+
T Consensus        28 ~p~~~~~PH~h~~A~~i~~V~~G~g~v~~v~~~g~~~~~~~~~~~~~l~~Gdv~vvP~G~~~~~~n~~~~~~v~~  102 (162)
T d2phla2          28 EEGALFVPHYYSKAIVILVVNEGEAHVELVGPKGNKETLEYESYRAELSKDDVFVIPAAYPVAIKATSNVNFTGF  102 (162)
T ss_dssp             CTTEEEEEEEESSCEEEEEEEESEEEEEEEEECC--CCSCEEEEEEEEETTCEEEECTTCCEEEEESSSEEEEEE
T ss_pred             CCCcEeCCccCCCCCEEEEEEEeeeEEEEEecCCccccccceeeEeeecCCcEEEECCCCEEEEEeCCCceEEEE
Confidence            57775   5788899999999999988863  2211        2479999999999999999988887665554

>d1sefa_ b.82.1.11 (A:) Hypothetical protein EF2996 {Enterococcus faecalis [TaxId: 1351]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein EF2996
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.64  E-value=4.3e-08  Score=64.00  Aligned_cols=52  Identities=12%  Similarity=0.231  Sum_probs=43.4

Q ss_pred             CceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeee-EEEEEEE
Q 037642           13 DAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVA-VDKYYKF   66 (74)
Q Consensus        13 ~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~-~~k~y~~   66 (74)
                      ..+|++|||+|++++++++  +...+++||.++||+|..|.+.-.+. -.+++++
T Consensus        69 ~~Ee~~yVl~G~~~~~~~~--~~~~l~~Gd~~~~p~~~~H~~~N~~~~~~~~l~v  121 (250)
T d1sefa_          69 GIQTLVYVIDGRLRVSDGQ--ETHELEAGGYAYFTPEMKMYLANAQEADTEVFLY  121 (250)
T ss_dssp             TEEEEEEEEESEEEEECSS--CEEEEETTEEEEECTTSCCEEEESSSSCEEEEEE
T ss_pred             CcEEEEEEEeeEEEEEECC--EEEEEcCCCEEEEcCCCcEEEEECCCCCEEEEEE
Confidence            4578999999999999988  47999999999999999999986553 3355555

>d2arca_ b.82.4.1 (A:) Regulatory protein AraC {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Regulatory protein AraC
family: Regulatory protein AraC
domain: Regulatory protein AraC
species: Escherichia coli [TaxId: 562]

Probab=98.62  E-value=2.7e-07  Score=55.56  Aligned_cols=52  Identities=13%  Similarity=0.136  Sum_probs=44.4

Q ss_pred             cCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEe---eeEEEEEE
Q 037642           12 FDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVS---VAVDKYYK   65 (74)
Q Consensus        12 ~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~---~~~~k~y~   65 (74)
                      .+..++.||++|++.+.+++  +.+.++|||++++|+|..|.+...   ++.+..|+
T Consensus        36 ~~~Y~l~yv~~G~G~~~i~~--~~y~l~~Gdl~li~P~~~H~y~~~~~~~~w~~~wl   90 (161)
T d2arca_          36 MKGYILNLTIRGQGVVKNQG--REFVCRPGDILLFPPGEIHHYGRHPEAREWYHQWV   90 (161)
T ss_dssp             CSSEEEEEEEEECEEEEETT--EEEEECTTCEEEECTTCCEEEEECTTSSEEEEEEE
T ss_pred             CCCEEEEEEEEeEEEEEECC--EEEEecCCeEEEEcCCCcEEEEeCCCCCCEEEEEE
Confidence            35789999999999999999  479999999999999999998764   35665555

>d2d40a1 b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Escherichia coli [TaxId: 562]

Probab=98.54  E-value=2.4e-07  Score=61.69  Aligned_cols=54  Identities=13%  Similarity=0.239  Sum_probs=45.2

Q ss_pred             EEecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEEE
Q 037642            9 QLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKF   66 (74)
Q Consensus         9 ~~~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~   66 (74)
                      +.| ...|+++|++|++++.+++  +.+.++|||++++|++..+.....+... +|.+
T Consensus       238 h~h-~~~~~~~v~~G~g~~~v~~--~~~~~~~GD~~~vP~~~~h~~~~~~d~~-l~~v  291 (308)
T d2d40a1         238 ART-TDSTIYHVVEGSGQVIIGN--ETFSFSAKDIFVVPTWHGVSFQTTQDSV-LFSF  291 (308)
T ss_dssp             BEE-SSCEEEEEEEEEEEEEETT--EEEEEETTCEEEECTTCCEEEEEEEEEE-EEEE
T ss_pred             ccC-ChheEEEEEeCcEEEEECC--EEEEEeCCCEEEeCCCCeEEEEcCCCeE-EEEE
Confidence            344 4689999999999999988  5799999999999999999999888753 3443

>d2et1a1 b.82.1.2 (A:1-201) Germin {Barley (Hordeum vulgare) [TaxId: 4513]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Germin
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=98.54  E-value=4.5e-07  Score=57.99  Aligned_cols=58  Identities=24%  Similarity=0.260  Sum_probs=44.8

Q ss_pred             CCceE---EEecCceEEEEEEecEEEEEeCC----Cce--EEEECCCcEEEEcCCCeEEEEEeeeEE
Q 037642            4 SPGKF---QLKFDAEETCYLLKGKVKVYPKG----SSD--WVEFGAGDLVTIPKGLSCTWDVSVAVD   61 (74)
Q Consensus         4 ~pg~~---~~~~~~~E~~~vleG~~~~~~~~----g~e--~~~~~~GD~v~~p~g~~~~~~~~~~~~   61 (74)
                      .||..   ++|....|+.||++|++++...+    ++.  ...+++||+++||+|..|.+.-...-.
T Consensus        80 ~pgg~~~PH~Hp~A~Ei~yV~~G~~~v~~v~~~~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~g~~~  146 (201)
T d2et1a1          80 APGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRVVRAGETFVIPRGLMHFQFNVGKTE  146 (201)
T ss_dssp             CTTCEEEEEECTTCCEEEEEEESCEEEEEECCGGGTTCEEEEEECTTCEEEECTTCCEEEEECSSSC
T ss_pred             CCCCCcCCcccCCCCEEEEEEcceEEEEEEeccCCCceeEEEEecCCCEEEECCCCeEEEEEcCCCC
Confidence            35553   67777899999999999988732    212  357999999999999999888766543

>d1sq4a_ b.82.1.11 (A:) Glyoxylate-induced protein PA1140 {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Glyoxylate-induced protein PA1140
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.53  E-value=1.3e-07  Score=62.77  Aligned_cols=45  Identities=18%  Similarity=0.319  Sum_probs=40.0

Q ss_pred             cCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEee
Q 037642           12 FDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSV   58 (74)
Q Consensus        12 ~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~   58 (74)
                      ...+|++|||+|++++++++  +...|++||.++||+|..+++.-.+
T Consensus        86 ~~~Ee~~yVl~G~~~l~~~g--~~~~L~~Gd~~y~P~g~~h~~~N~g  130 (273)
T d1sq4a_          86 PNAEAVLFVVEGELSLTLQG--QVHAMQPGGYAFIPPGADYKVRNTT  130 (273)
T ss_dssp             TTEEEEEEEEESCEEEEESS--CEEEECTTEEEEECTTCCEEEECCS
T ss_pred             CCcEEEEEEEeCEEEEEECC--EEEEecCCCEEEECCCCcEeeeecC
Confidence            34688999999999999988  4799999999999999999998544

>d1rc6a_ b.82.1.11 (A:) Hypothetical protein YlbA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein YlbA
species: Escherichia coli [TaxId: 562]

Probab=98.52  E-value=1.7e-07  Score=60.99  Aligned_cols=53  Identities=17%  Similarity=0.332  Sum_probs=43.8

Q ss_pred             CceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeee-EEEEEEEe
Q 037642           13 DAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVA-VDKYYKFE   67 (74)
Q Consensus        13 ~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~-~~k~y~~~   67 (74)
                      +.+|++|||+|++++.+++  +.+.+++||.+++|+|..+.+..... -.+++++.
T Consensus        72 ~~Ee~~~Vl~G~~~~~~~~--~~~~l~~Gd~~~~p~~~~H~~~N~~~~~~~~l~v~  125 (253)
T d1rc6a_          72 GIETFLYVISGNITAKAEG--KTFALSEGGYLYCPPGSLMTFVNAQAEDSQIFLYK  125 (253)
T ss_dssp             TEEEEEEEEESEEEEEETT--EEEEEETTEEEEECTTCCCEEEECSSSCEEEEEEE
T ss_pred             CcEEEEEEEECEEEEEECC--EEEEECCCCEEEECCCCCEEEEECCCCCEEEEEEE
Confidence            4678999999999999988  47999999999999999999986654 23444453

>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Oxalate decarboxylase OxdC (YvrK)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.51  E-value=9e-07  Score=60.92  Aligned_cols=63  Identities=21%  Similarity=0.325  Sum_probs=46.1

Q ss_pred             CCceE---EEecCceEEEEEEecEEEEEe--CCCce-EEEECCCcEEEEcCCCeEEEEEeeeEEEEEEEe
Q 037642            4 SPGKF---QLKFDAEETCYLLKGKVKVYP--KGSSD-WVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFE   67 (74)
Q Consensus         4 ~pg~~---~~~~~~~E~~~vleG~~~~~~--~~g~e-~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~~   67 (74)
                      +||.+   +||. ..|+.|||+|++.++.  .+|.. ...+++||+++||+|..|...-.+.-..+..+.
T Consensus        80 ~pga~~~pH~H~-~ae~~yVl~G~~~vt~Vd~~G~~~~~~l~~GDv~~~P~G~~H~i~n~~dg~e~l~vf  148 (372)
T d1j58a_          80 KPGAIRELHWHK-EAEWAYMIYGSARVTIVDEKGRSFIDDVGEGDLWYFPSGLPHSIQALEEGAEFLLVF  148 (372)
T ss_dssp             CTTCEEEEEEES-SCEEEEEEEEEEEEEEECTTSCEEEEEEETTEEEEECTTCCEEEEEEEEEEEEEEEE
T ss_pred             CCCcCcCCcccC-cccEEEEEeCEEEEEEEeCCCcEEEEEeccCCEEEECCCCEEEEEeCCCCcEEEEEE
Confidence            57775   4665 5699999999999986  33322 345999999999999999887766544444443

>d2d40a1 b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Escherichia coli [TaxId: 562]

Probab=98.40  E-value=2.7e-07  Score=61.49  Aligned_cols=54  Identities=13%  Similarity=0.224  Sum_probs=43.8

Q ss_pred             CCceE---EEecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeee
Q 037642            4 SPGKF---QLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVA   59 (74)
Q Consensus         4 ~pg~~---~~~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~   59 (74)
                      .||..   +.| +..|+.|||+|++.++..++ +.+.+++||++++|+|..|...-.+.
T Consensus        62 ~PG~~~~~H~H-~~~e~~~vl~G~g~~t~~~~-~~~~~~~Gd~~~~P~~~~H~~~n~g~  118 (308)
T d2d40a1          62 MPGEVAPSHRH-NQSALRFIVEGKGAFTAVDG-ERTPMNEGDFILTPQWRWHDHGNPGD  118 (308)
T ss_dssp             CTTCEEEEEEE-SSCEEEEEEECSSCEEEETT-EEEECCTTCEEEECTTSCEEEECCSS
T ss_pred             CCCCccccccC-chhheEEEEEeeEEEEEecC-EEEEecCCCEEEeCCCceEEeEECCC
Confidence            46653   444 56899999999998875454 57999999999999999999987654

>d2phla1 b.82.1.2 (A:11-210) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]

Probab=98.39  E-value=7.4e-07  Score=56.73  Aligned_cols=54  Identities=17%  Similarity=0.039  Sum_probs=42.2

Q ss_pred             CCceE--EEecCceEEEEEEecEEEEEe--CCCceEE------EECCCcEEEEcCCCeEEEEEe
Q 037642            4 SPGKF--QLKFDAEETCYLLKGKVKVYP--KGSSDWV------EFGAGDLVTIPKGLSCTWDVS   57 (74)
Q Consensus         4 ~pg~~--~~~~~~~E~~~vleG~~~~~~--~~g~e~~------~~~~GD~v~~p~g~~~~~~~~   57 (74)
                      +|+..  +.+.+.+++.||++|++.+.+  .++.++.      .+++||+++||+|..+.+.-.
T Consensus        50 ~P~~l~lP~~~nA~~i~yV~~G~G~v~~v~p~~~~~~~~~~~~~l~~GDv~~iPaG~~~~~~n~  113 (200)
T d2phla1          50 KPETLLLPQQADAELLLVVRSGSAILVLVKPDDRREYFFLTSDNPIFSDHQKIPAGTIFYLVNP  113 (200)
T ss_dssp             CSSEEEEEEEESEEEEEEEEESEEEEEEEETTTEEEEEEEESSCTTSCSEEEECTTCEEEEEEC
T ss_pred             cCCceeeeecCCCCEEEEEEeeeEEEEEEECCCCceeehhhccCccCCCEEEECCCCeEEEEEC
Confidence            67776  345689999999999988875  3442332      489999999999999988753

>d3bu7a1 b.82.1.23 (A:19-373) Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [TaxId: 89184]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Silicibacter pomeroyi [TaxId: 89184]

Probab=98.36  E-value=6.9e-07  Score=61.11  Aligned_cols=48  Identities=10%  Similarity=0.076  Sum_probs=41.1

Q ss_pred             EEecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeee
Q 037642            9 QLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVA   59 (74)
Q Consensus         9 ~~~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~   59 (74)
                      +.| ...+++||++|++++++++  +++.+++||++++|++..+++...+.
T Consensus       272 hrH-~~~~v~~v~~G~g~~~i~g--~~~~~~~GDv~~vP~~~~h~~~N~s~  319 (355)
T d3bu7a1         272 HRH-TGNVIYNVAKGQGYSIVGG--KRFDWSEHDIFCVPAWTWHEHCNTQE  319 (355)
T ss_dssp             EEE-SSCEEEEEEECCEEEEETT--EEEEECTTCEEEECTTCCEEEEECCS
T ss_pred             cCc-cCcEEEEEEECcEEEEECC--EEEEeeCCCEEEeCCCCcEEeecCCC
Confidence            344 3568999999999999988  57999999999999999999986553

>d2phda1 b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase {Pseudaminobacter salicylatoxidans [TaxId: 93369]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Pseudaminobacter salicylatoxidans [TaxId: 93369]

Probab=98.30  E-value=1.6e-06  Score=59.00  Aligned_cols=46  Identities=13%  Similarity=0.257  Sum_probs=41.9

Q ss_pred             CceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeE
Q 037642           13 DAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAV   60 (74)
Q Consensus        13 ~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~   60 (74)
                      ...++++|++|++++++++  +++.+++||+|++|++..+++...+..
T Consensus       282 ~~~~v~~vi~G~g~~~i~~--~~~~~~~gDvf~vP~~~~h~~~n~~~~  327 (351)
T d2phda1         282 VGSTVFQVFEGAGAVVMNG--ETTKLEKGDMFVVPSWVPWSLQAETQF  327 (351)
T ss_dssp             SSCEEEEEEESCEEEEETT--EEEEECTTCEEEECTTCCEEEEESSCE
T ss_pred             cCcEEEEEEeCcEEEEECC--EEEEEcCCCEEEeCCCCcEEEecCCCe
Confidence            4679999999999999988  579999999999999999999987764

>d1vr3a1 b.82.1.6 (A:1-179) Acireductone dioxygenase {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Acireductone dioxygenase
domain: Acireductone dioxygenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.28  E-value=1.2e-06  Score=55.41  Aligned_cols=47  Identities=23%  Similarity=0.522  Sum_probs=39.6

Q ss_pred             CceEEEEEEecEEEEEeCCCc-eE--EEECCCcEEEEcCCCeEEEEEeee
Q 037642           13 DAEETCYLLKGKVKVYPKGSS-DW--VEFGAGDLVTIPKGLSCTWDVSVA   59 (74)
Q Consensus        13 ~~~E~~~vleG~~~~~~~~g~-e~--~~~~~GD~v~~p~g~~~~~~~~~~   59 (74)
                      +.+|+.|||+|++.+.+.+.. ..  +.+++||++.||+|..|.+.+.+.
T Consensus        91 ~~~Evr~vl~G~G~f~v~~~~~~~iri~~~~GDli~iPag~~HwFtl~~~  140 (179)
T d1vr3a1          91 LDEEIRYILEGSGYFDVRDKEDKWIRISMEKGDMITLPAGIYHRFTLDEK  140 (179)
T ss_dssp             SSCEEEEEEEEEEEEEEECTTSCEEEEEEETTEEEEECTTCCEEEEECTT
T ss_pred             CCcEEEEEEeCcEEEEEECCCCcEEEEEEeCCCEEEeCCCccEeccCCCC
Confidence            579999999999999886531 23  567899999999999999998775

>d1zrra1 b.82.1.6 (A:1-179) Acireductone dioxygenase {Klebsiella pneumoniae [TaxId: 573]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Acireductone dioxygenase
domain: Acireductone dioxygenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=98.22  E-value=1.4e-07  Score=59.79  Aligned_cols=47  Identities=15%  Similarity=0.244  Sum_probs=38.4

Q ss_pred             CceEEEEEEecEEEEEeCCCce--EEEECCCcEEEEcCCCeEEEEEeee
Q 037642           13 DAEETCYLLKGKVKVYPKGSSD--WVEFGAGDLVTIPKGLSCTWDVSVA   59 (74)
Q Consensus        13 ~~~E~~~vleG~~~~~~~~g~e--~~~~~~GD~v~~p~g~~~~~~~~~~   59 (74)
                      +.+|+.||++|++.+.+.++.+  .+.+++||++.||+|..|.+...+.
T Consensus        99 ~~dEvr~vv~G~g~f~v~~~d~~~~v~~~~GDli~vPag~~H~F~~~~~  147 (179)
T d1zrra1          99 GEDEVRFFVEGAGLFCLHIGDEVFQVLCEKNDLISVPAHTPHWFDMGSE  147 (179)
T ss_dssp             SSCEEEEEEESCCCCCEECSSCEEEEECCCSCEEEECTTCCBCCCCSSC
T ss_pred             CCceEEEEEeCeEEEEEEcCCeEEEEEEcCCCEEEeCCCCeEccccCCC
Confidence            5799999999999876644423  3578999999999999999987654

>d2phda1 b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase {Pseudaminobacter salicylatoxidans [TaxId: 93369]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Pseudaminobacter salicylatoxidans [TaxId: 93369]

Probab=98.21  E-value=4.1e-06  Score=56.87  Aligned_cols=54  Identities=15%  Similarity=0.113  Sum_probs=43.2

Q ss_pred             CCceE---EEecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeee
Q 037642            4 SPGKF---QLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVA   59 (74)
Q Consensus         4 ~pg~~---~~~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~   59 (74)
                      .||..   +.| ...++.|||+|++.++.-+| +.+.+++||++++|+|..|...-.+.
T Consensus        95 ~PGe~~~~H~H-~~~~~~~vi~G~g~~t~v~g-~~~~~~~GD~~~~P~~~~H~~~n~~d  151 (351)
T d2phda1          95 GPRETAPEHRH-SQNAFRFVVEGEGVWTVVNG-DPVRMSRGDLLLTPGWCFHGHMNDTD  151 (351)
T ss_dssp             CTTCEEEEEEE-SSCEEEEEEECEEEEEEETT-EEEEEETTCEEEECTTCCEEEEECSS
T ss_pred             CCCCcCCcccc-ccceeEEEEECCcEEEEECC-EEEEEeCCCEEEeCCCceEEEEEcCC
Confidence            35654   334 58899999999997766555 57999999999999999999986643

>d1eyba_ b.82.1.4 (A:) Homogentisate dioxygenase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Homogentisate dioxygenase
domain: Homogentisate dioxygenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=7.2e-06  Score=57.66  Aligned_cols=60  Identities=17%  Similarity=0.196  Sum_probs=53.1

Q ss_pred             EEEecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEEEecCC
Q 037642            8 FQLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFESTS   70 (74)
Q Consensus         8 ~~~~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~~~~~   70 (74)
                      +-+..+.||++++-+|++.|..+=|  .+.+++||.++||+|...+.+..++. +.|++....
T Consensus       145 ~f~NADGDeLi~~~~Gsg~l~TefG--~L~v~pGDyvVIPRG~~frv~~~~~~-r~yiiE~~g  204 (439)
T d1eyba_         145 CFYNSDGDFLIVPQKGNLLIYTEFG--KMLVQPNEICVIQRGMRFSIDVFEET-RGYILEVYG  204 (439)
T ss_dssp             EEEESSEEEEEEEEESCEEEEETTE--EEEECTTEEEEECTTCCEEEECSSSE-EEEEEEEES
T ss_pred             eeEcCCCCEEEEEEeCcEEEEEeee--EEEecCCcEEEecCceEEEEecCCCc-eEEEEeecC
Confidence            4456789999999999999999998  59999999999999999999999987 678877644

>d3bu7a1 b.82.1.23 (A:19-373) Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [TaxId: 89184]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Silicibacter pomeroyi [TaxId: 89184]

Probab=98.02  E-value=7.4e-06  Score=55.87  Aligned_cols=51  Identities=22%  Similarity=0.291  Sum_probs=41.4

Q ss_pred             CceE---EEecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEe
Q 037642            5 PGKF---QLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVS   57 (74)
Q Consensus         5 pg~~---~~~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~   57 (74)
                      ||..   +.| ...++.|||+|++.++.-+| +...+++||++++|+|..|.....
T Consensus        94 PGe~~~~HrH-~~~~~~~vi~G~g~~t~v~g-e~~~~~~GD~~~~P~~~~H~h~n~  147 (355)
T d3bu7a1          94 AGERAGAHRH-AASALRFIMEGSGAYTIVDG-HKVELGANDFVLTPNGTWHEHGIL  147 (355)
T ss_dssp             TTCBCCCEEE-SSCEEEEEEECSCEEEEETT-EEEEECTTCEEEECTTCCEEEEEC
T ss_pred             CCCcCccccc-ccceeEEEEECCcEEEEECC-EEEEeeCCCEEEeCCCceEeeecC
Confidence            5553   344 57899999999987765555 579999999999999999999874

>d1fxza1 b.82.1.2 (A:10-248) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), proglycinin [TaxId: 3847]

Probab=97.86  E-value=0.00014  Score=47.32  Aligned_cols=56  Identities=18%  Similarity=0.261  Sum_probs=43.9

Q ss_pred             CCceE--EEecCceEEEEEEecEEEEEeC--CC-----------------------ceEEEECCCcEEEEcCCCeEEEEE
Q 037642            4 SPGKF--QLKFDAEETCYLLKGKVKVYPK--GS-----------------------SDWVEFGAGDLVTIPKGLSCTWDV   56 (74)
Q Consensus         4 ~pg~~--~~~~~~~E~~~vleG~~~~~~~--~g-----------------------~e~~~~~~GD~v~~p~g~~~~~~~   56 (74)
                      +|+.+  +.+.+.+.+.||++|++.+.+-  +.                       .....|++||++.||+|..+.+--
T Consensus        47 ~p~gL~lP~y~~a~~i~yV~qG~G~~g~v~pgc~et~~~~~~~~~~~~~~~~~d~~qk~~~lr~GDVi~iPAG~~~w~~N  126 (239)
T d1fxza1          47 NRNALRRPSYTNGPQEIYIQQGKGIFGMIYPGCPSTFEEPQQPQQRGQSSRPQDRHQKIYNFREGDLIAVPTGVAWWMYN  126 (239)
T ss_dssp             CTTEEEEEEEESSCEEEEEEECCEEEEEECTTCCCC------------------CCCCEEEECTTEEEEECTTCEEEEEE
T ss_pred             ccCceecceecCCCeEEEEEeCEEEEEEecCCChhhhcccccccccccccccchhhhhhhccccCCEEEecCCceEEEEe
Confidence            46665  3447899999999999988864  10                       123589999999999999999987


Q ss_pred             eee
Q 037642           57 SVA   59 (74)
Q Consensus        57 ~~~   59 (74)
                      .+.
T Consensus       127 ~gn  129 (239)
T d1fxza1         127 NED  129 (239)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            664

>d1yfua1 b.82.1.20 (A:1-174) 3-hydroxyanthranilate-3,4-dioxygenase {Ralstonia metallidurans [TaxId: 119219]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: 3-hydroxyanthranilic acid dioxygenase-like
domain: 3-hydroxyanthranilate-3,4-dioxygenase
species: Ralstonia metallidurans [TaxId: 119219]

Probab=97.79  E-value=3.6e-05  Score=48.24  Aligned_cols=47  Identities=19%  Similarity=0.310  Sum_probs=38.2

Q ss_pred             EEecC-ceEEEEEEecEEEEEe-CCC-ceEEEECCCcEEEEcCCCeEEEE
Q 037642            9 QLKFD-AEETCYLLKGKVKVYP-KGS-SDWVEFGAGDLVTIPKGLSCTWD   55 (74)
Q Consensus         9 ~~~~~-~~E~~~vleG~~~~~~-~~g-~e~~~~~~GD~v~~p~g~~~~~~   55 (74)
                      .||.+ .+|++|=|+|.+.+.+ ++| -+.+.+++||++++|++.+|.=.
T Consensus        49 DyH~~~~eE~FyQlkG~m~Lkv~e~g~~~di~I~EGe~fLLP~~vpHSPq   98 (174)
T d1yfua1          49 DYHDDPLEEFFYQLRGNAYLNLWVDGRRERADLKEGDIFLLPPHVRHSPQ   98 (174)
T ss_dssp             CEEECSSCEEEEEEESCEEEEEEETTEEEEEEECTTCEEEECTTCCEEEE
T ss_pred             ccccCcchhheeeeccceEEEEEeCCceEEEEcCCCcEEEeCCCCCCCcc
Confidence            46764 5899999999999987 343 34588999999999999988754

>d1zvfa1 b.82.1.20 (A:1-175) 3-hydroxyanthranilate-3,4-dioxygenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: 3-hydroxyanthranilic acid dioxygenase-like
domain: 3-hydroxyanthranilate-3,4-dioxygenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.72  E-value=5.5e-05  Score=47.39  Aligned_cols=47  Identities=15%  Similarity=0.128  Sum_probs=37.6

Q ss_pred             EEecC-ceEEEEEEecEEEEEe-CCC-----ceEEEECCCcEEEEcCCCeEEEE
Q 037642            9 QLKFD-AEETCYLLKGKVKVYP-KGS-----SDWVEFGAGDLVTIPKGLSCTWD   55 (74)
Q Consensus         9 ~~~~~-~~E~~~vleG~~~~~~-~~g-----~e~~~~~~GD~v~~p~g~~~~~~   55 (74)
                      .||.+ .+|++|=|+|.+.+.+ +++     -..+.+++||++++|++.+|.=.
T Consensus        47 DyH~~~~eE~FYQlkGdm~Lkv~~~~~~~gk~~di~I~EGe~fLLP~~vPHSPq  100 (175)
T d1zvfa1          47 DYHINPTPEWFYQKKGSMLLKVVDETDAEPKFIDIIINEGDSYLLPGNVPHSPV  100 (175)
T ss_dssp             CEEECSSCEEEEEEESCEEEEEEECSSSSCEEEEEEECTTEEEEECTTCCEEEE
T ss_pred             ccccCcchhheeeecCcEEEEEEecCCCCCceeEEeecCCCEEEeCCCCCCCCC
Confidence            57765 5999999999999965 221     12578999999999999999755

>d1od5a1 b.82.1.2 (A:7-251) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]

Probab=97.68  E-value=0.00034  Score=45.57  Aligned_cols=65  Identities=14%  Similarity=0.095  Sum_probs=46.8

Q ss_pred             CCceE--EEecCceEEEEEEecEEEEEeCC--CceE--------------------------EEECCCcEEEEcCCCeEE
Q 037642            4 SPGKF--QLKFDAEETCYLLKGKVKVYPKG--SSDW--------------------------VEFGAGDLVTIPKGLSCT   53 (74)
Q Consensus         4 ~pg~~--~~~~~~~E~~~vleG~~~~~~~~--g~e~--------------------------~~~~~GD~v~~p~g~~~~   53 (74)
                      .|+..  +.+.+...+.||++|++.+.+--  ..++                          ..++.||++.||+|..+.
T Consensus        47 ~p~gL~lP~ys~a~~i~yV~qG~G~~giv~Pgc~et~~~~~~~~~~~~~~~~~~~~d~~qk~~rl~~GDVi~iPAG~~~w  126 (245)
T d1od5a1          47 NRNGLHLPSYSPYPQMIIVVQGKGAIGFAFPGCPETFEKPQQQSSRRGSRSQQQLQDSHQKIRHFNEGDVLVIPPGVPYW  126 (245)
T ss_dssp             CTTEEEEEEECSSCEEEEEEECEEEEEECCTTCCCCEEECC---------------EEESCEEEEETTEEEEECTTCCEE
T ss_pred             cCCccccccccCCCeEEEEEeCEEEEEEEeCCChhhhcchhhcccccccccccccccceeeeecccCCCEEEECCCceEE
Confidence            46665  33478999999999999998752  1112                          349999999999999999


Q ss_pred             EEEeee--EEEEEEEec
Q 037642           54 WDVSVA--VDKYYKFES   68 (74)
Q Consensus        54 ~~~~~~--~~k~y~~~~   68 (74)
                      +--.+.  +..+.+++.
T Consensus       127 ~yNdgn~~Lv~v~~~d~  143 (245)
T d1od5a1         127 TYNTGDEPVVAISLLDT  143 (245)
T ss_dssp             EEECSSSCEEEEEEECT
T ss_pred             EEeCCCCcEEEEEEEcc
Confidence            987664  444444443

>d2o1qa1 b.82.1.21 (A:1-144) Putative acetyl/propionyl-CoA carboxylase subunit alpha Mpe_A3659 {Rubrivivax gelatinosus [TaxId: 28068]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Acetylacetone-cleaving enzyme-like
domain: Putative acetyl/propionyl-CoA carboxylase subunit alpha Mpe A3659
species: Rubrivivax gelatinosus [TaxId: 28068]

Probab=97.55  E-value=0.00016  Score=43.29  Aligned_cols=57  Identities=18%  Similarity=0.072  Sum_probs=40.7

Q ss_pred             CceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEE-EEEeeeEEEEEEEecC
Q 037642           13 DAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCT-WDVSVAVDKYYKFEST   69 (74)
Q Consensus        13 ~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~-~~~~~~~~k~y~~~~~   69 (74)
                      ...|..+||+|+..+...+......+.+|+.++.|+|..|+ +...+...-++.++.+
T Consensus        62 ~~~e~~~VL~G~l~~~~g~~~~g~~~~~g~y~~~Pag~~H~~~~~~e~~~~~~~~~Gp  119 (144)
T d2o1qa1          62 VGPGEYFLTKGKMDVRGGKAAGGDTAIAPGYGYESANARHDKTEFPVASEFYMSFLGP  119 (144)
T ss_dssp             SSCEEEEEEEEEEEETTCGGGTSEEEESSEEEEECTTCEESCCEEEEEEEEEEEEESC
T ss_pred             ccCEEEEEEEEEEEecCCCcCCCceEeCCceeEcCCCCeEccccCCCCEEEEEEEECC
Confidence            46788999999998764332222578899999999999997 5666666555444433

>d2pa7a1 b.82.1.1 (A:2-136) dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA {Aneurinibacillus thermoaerophilus [TaxId: 143495]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA
species: Aneurinibacillus thermoaerophilus [TaxId: 143495]

Probab=97.28  E-value=0.0016  Score=38.24  Aligned_cols=60  Identities=8%  Similarity=-0.058  Sum_probs=46.0

Q ss_pred             EEEecCceEEEEEEecEEEEEeCCCceE--EE-ECCCcEEEEcCCCeEEEEEee-eEEEEEEEe
Q 037642            8 FQLKFDAEETCYLLKGKVKVYPKGSSDW--VE-FGAGDLVTIPKGLSCTWDVSV-AVDKYYKFE   67 (74)
Q Consensus         8 ~~~~~~~~E~~~vleG~~~~~~~~g~e~--~~-~~~GD~v~~p~g~~~~~~~~~-~~~k~y~~~   67 (74)
                      +++|....++++|+.|.+.+.+.++...  +. -++++++++|+|..+.+...+ ...-.|+++
T Consensus        47 ~H~Hk~~~q~~~vi~G~i~~~~~d~~~~~~~~l~~~~~~l~IPpg~~h~~~~l~~~s~ll~l~~  110 (135)
T d2pa7a1          47 FHAHKKLEQVLVCLNGSCRVILDDGNIIQEITLDSPAVGLYVGPAVWHEMHDFSSDCVMMVLAS  110 (135)
T ss_dssp             EEEESSCCEEEEEEESCEEEEEECSSCEEEEEECCTTEEEEECTTCEEEEECCCTTCEEEEEES
T ss_pred             eeccccccEEEEecccEEEEEEEeccccceeecccCCceeeeCCCEeeeEEecCCCcEEEEEcC
Confidence            5778889999999999999988766322  23 377999999999999999664 444455544

>d1qwra_ b.82.1.3 (A:) Mannose-6-phosphate isomerase ManA {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Type I phosphomannose isomerase
domain: Mannose-6-phosphate isomerase ManA
species: Bacillus subtilis [TaxId: 1423]

Probab=97.23  E-value=0.0011  Score=43.81  Aligned_cols=36  Identities=14%  Similarity=0.247  Sum_probs=31.7

Q ss_pred             ceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCe
Q 037642           14 AEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLS   51 (74)
Q Consensus        14 ~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~   51 (74)
                      ...+++|++|++++..++  +.+.+++||.++||++..
T Consensus       265 ~~~il~vi~G~~~i~~~~--~~~~l~~G~~~~ipa~~~  300 (315)
T d1qwra_         265 SFLICSVIEGSGLLKYED--KTCPLKKGDHFILPAQMP  300 (315)
T ss_dssp             SCEEEEEEEEEEEEEETT--EEEEEETTCEEEECTTCC
T ss_pred             CcEEEEEEeCeEEEEECC--EEEEEecCcEEEEECCCC
Confidence            468999999999999887  468999999999999863

>d1zx5a1 b.82.1.3 (A:1-299) Putative mannosephosphate isomerase AF0035 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Type I phosphomannose isomerase
domain: Putative mannosephosphate isomerase AF0035
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.87  E-value=0.0074  Score=39.57  Aligned_cols=48  Identities=15%  Similarity=0.281  Sum_probs=35.2

Q ss_pred             ceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEee---eEEEEEE
Q 037642           14 AEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSV---AVDKYYK   65 (74)
Q Consensus        14 ~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~---~~~k~y~   65 (74)
                      ...++++++|++++.  ++ +.+.+++||.++||++.. .+++..   .+.+.|+
T Consensus       247 ~~~il~~~~G~~~i~--~~-~~~~l~~G~s~~iPA~~~-~~~i~g~~~~~l~~yv  297 (299)
T d1zx5a1         247 VMNILYAAEGYFILR--GK-ETADLHRGYSCLVPASTD-SFTVESERGKIVRIYL  297 (299)
T ss_dssp             BCEEEEEEESCEEEE--SS-SEEEECTTCEEEECTTCC-EEEEEEEEEEEEEEEE
T ss_pred             ceEEEEEeccEEEEe--CC-CEEEEcCCcEEEEecCCc-cEEEEcCcEEEEEEEE
Confidence            578999999999885  33 468999999999999875 344433   3444554

>d1pmia_ b.82.1.3 (A:) Phosphomannose isomerase {Yeast (Candida albicans) [TaxId: 5476]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Type I phosphomannose isomerase
domain: Phosphomannose isomerase
species: Yeast (Candida albicans) [TaxId: 5476]

Probab=96.74  E-value=0.0041  Score=42.84  Aligned_cols=45  Identities=16%  Similarity=0.155  Sum_probs=37.7

Q ss_pred             ceEEEEEEecEEEEEeCCC-ceEEEECCCcEEEEcCCCeEEEEEee
Q 037642           14 AEETCYLLKGKVKVYPKGS-SDWVEFGAGDLVTIPKGLSCTWDVSV   58 (74)
Q Consensus        14 ~~E~~~vleG~~~~~~~~g-~e~~~~~~GD~v~~p~g~~~~~~~~~   58 (74)
                      ..++++|++|+++|...++ ...+.+++||+++||+|...+++...
T Consensus       379 ~~~Illv~~G~~~i~~~~~~~~~~~l~~G~~~fIpa~~~~~i~~~~  424 (440)
T d1pmia_         379 GPSIVIATNGKGTIQITGDDSTKQKIDTGYVFFVAPGSSIELTADS  424 (440)
T ss_dssp             SCEEEEEEESEEEEEETTCGGGCEEEETTCEEEECTTCCEEEEECS
T ss_pred             CcEEEEEEcCEEEEEecCCCccEEEeCCceEEEEcCCceEEEEeec
Confidence            4689999999999997653 13589999999999999988887665

>d1ywka1 b.82.1.13 (A:1001-1260) 5-keto-4-deoxyuronate isomerase KduI {Enterococcus faecalis [TaxId: 1351]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: KduI-like
domain: 5-keto-4-deoxyuronate isomerase KduI
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.11  E-value=0.0045  Score=40.55  Aligned_cols=56  Identities=14%  Similarity=0.018  Sum_probs=42.0

Q ss_pred             ceEEE-EEEecEEEEEeCCCceEEEECCCcEEEEcCCCe-EEEEEe--eeEEEEEEEecCCC
Q 037642           14 AEETC-YLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLS-CTWDVS--VAVDKYYKFESTSS   71 (74)
Q Consensus        14 ~~E~~-~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~-~~~~~~--~~~~k~y~~~~~~~   71 (74)
                      ..|+. ..|.|.++|+++|  +++.+.+.|.+++|+|.+ .++...  ..-.|+|+..+|-.
T Consensus        73 rRElgiVnigG~g~V~VDG--~~f~l~~~D~lYvg~G~~~V~f~s~da~~pa~fyi~SAPAh  132 (260)
T d1ywka1          73 RRELGVINIGGPGFIEIDG--AKETMKKQDGYYIGKETKHVRFSSENPDNPAKFYISCVPAH  132 (260)
T ss_dssp             TEEEEEEECSSCEEEEETT--EEEEECTTCEEEECTTCCCEEEEESCTTSCCCEEEEEEECS
T ss_pred             hcEEEEEEeCCcEEEEECC--EEEecCCCcEEEECCCCceEEEeccCCCCCcEEEEEeeccC
Confidence            44554 5689999999988  579999999999999975 444432  23358899887743

>d1xrua1 b.82.1.13 (A:1-277) 5-keto-4-deoxyuronate isomerase KduI {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: KduI-like
domain: 5-keto-4-deoxyuronate isomerase KduI
species: Escherichia coli [TaxId: 562]

Probab=95.91  E-value=0.0057  Score=40.36  Aligned_cols=57  Identities=18%  Similarity=0.223  Sum_probs=41.5

Q ss_pred             CceEEE-EEEecEEEEEeCCCceEEEECCCcEEEEcCCCe-EEEEEe--eeEEEEEEEecCCC
Q 037642           13 DAEETC-YLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLS-CTWDVS--VAVDKYYKFESTSS   71 (74)
Q Consensus        13 ~~~E~~-~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~-~~~~~~--~~~~k~y~~~~~~~   71 (74)
                      ...|+. ..|.|.++|+++|  +++.+...|.+++|.|.+ ..+.-.  ..-.|+|++.++..
T Consensus        74 erRElgiVnlgG~g~V~VDG--~~feL~~rd~lYvg~G~~~V~f~s~da~~pa~fyl~SAPAh  134 (277)
T d1xrua1          74 ERRELGVINIGGAGTITVDG--QCYEIGHRDALYVGKGAKEVVFASIDTGTPAKFYYNCAPAH  134 (277)
T ss_dssp             TTEEEEEEECSSCEEEEETT--EEEEECTTCEEEECTTCCCEEEEESCTTSCCCEEEEEEECS
T ss_pred             hccEEEEEEeCCCEEEEECC--EEEeeCCccEEEeCCCCceEEEeccCCCCCcEEEEEecccC
Confidence            345554 5589999999988  579999999999999975 333321  12248999888753

>d1vrba1 b.82.2.11 (A:8-326) Putative asparaginyl hydroxylase YxbC {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Asparaginyl hydroxylase-like
domain: Putative asparaginyl hydroxylase YxbC
species: Bacillus subtilis [TaxId: 1423]

Probab=95.53  E-value=0.0093  Score=37.81  Aligned_cols=26  Identities=23%  Similarity=0.399  Sum_probs=22.5

Q ss_pred             EEEECCCcEEEEcCCCeEEEEEeeeE
Q 037642           35 WVEFGAGDLVTIPKGLSCTWDVSVAV   60 (74)
Q Consensus        35 ~~~~~~GD~v~~p~g~~~~~~~~~~~   60 (74)
                      .+.++|||+++||+|+.|.-...++.
T Consensus       200 ~~~L~pGDvLYiP~gw~H~v~s~~~s  225 (319)
T d1vrba1         200 IVNLTPGTMLYLPRGLWHSTKSDQAT  225 (319)
T ss_dssp             EEEECTTCEEEECTTCEEEEECSSCE
T ss_pred             EEEECCCCEEEeCCCceEEeEecCCe
Confidence            36899999999999999998877653

>d1h2ka_ b.82.2.6 (A:) Hypoxia-inducible factor HIF ihhibitor (FIH1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Hypoxia-inducible factor HIF ihhibitor (FIH1)
domain: Hypoxia-inducible factor HIF ihhibitor (FIH1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.28  E-value=0.068  Score=34.59  Aligned_cols=54  Identities=17%  Similarity=0.126  Sum_probs=39.3

Q ss_pred             cCCceE-EEecCc-eEEEEEEecEEEEEeC---------------------------------------CCceEEEECCC
Q 037642            3 CSPGKF-QLKFDA-EETCYLLKGKVKVYPK---------------------------------------GSSDWVEFGAG   41 (74)
Q Consensus         3 ~~pg~~-~~~~~~-~E~~~vleG~~~~~~~---------------------------------------~g~e~~~~~~G   41 (74)
                      ..+|+. .+|+|. +-+..+++|+=.+.+-                                       .. -...++||
T Consensus       176 G~~gs~t~~H~D~~~~~~~q~~G~K~~~l~~p~~~~~~~~~~~~~~~~~~s~~d~~~~d~~~~p~~~~~~~-~~~~l~pG  254 (335)
T d1h2ka_         176 GMEGNVTPAHYDEQQNFFAQIKGYKRCILFPPDQFECLYPYPVHHPCDRQSQVDFDNPDYERFPNFQNVVG-YETVVGPG  254 (335)
T ss_dssp             ECTTCEEEEECCSEEEEEEEEESCEEEEEECGGGHHHHCBCCTTSTTTTBBCCCTTSCCTTTCGGGGGCCE-EEEEECTT
T ss_pred             cCCCCCCccccccccceEEEeccceEEEEeccccccccccccccCCCCcceeccccCcchhhccchhcCCc-eEEEECCC
Confidence            445555 467764 5678889999777641                                       01 23679999


Q ss_pred             cEEEEcCCCeEEEEEe
Q 037642           42 DLVTIPKGLSCTWDVS   57 (74)
Q Consensus        42 D~v~~p~g~~~~~~~~   57 (74)
                      |+++||+|+.|.-+..
T Consensus       255 d~L~iP~~w~H~V~~~  270 (335)
T d1h2ka_         255 DVLYIPMYWWHHIESL  270 (335)
T ss_dssp             CEEEECTTCEEEEEEC
T ss_pred             CEEeeCCCCeEEEEEc
Confidence            9999999999998764

>d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: HCN pacemaker channel
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.04  E-value=0.071  Score=31.59  Aligned_cols=62  Identities=15%  Similarity=0.332  Sum_probs=39.7

Q ss_pred             CCceEEEec--CceEEEEEEecEEEEEeCCCceEEEECCCcEEE---EcCCC--eEEEEEeeeEEEEEEEe
Q 037642            4 SPGKFQLKF--DAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVT---IPKGL--SCTWDVSVAVDKYYKFE   67 (74)
Q Consensus         4 ~pg~~~~~~--~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~---~p~g~--~~~~~~~~~~~k~y~~~   67 (74)
                      .||..-+..  ..+.+++|++|.+.+..+++ ....+.+||.+=   +-.|.  ..+....+.+ .++++.
T Consensus        97 ~~g~~I~~~g~~~~~ly~i~~G~v~v~~~~~-~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~-~l~~l~  165 (193)
T d1q3ea_          97 QPGDYIIREGTIGKKMYFIQHGVVSVLTKGN-KEMKLSDGSYFGEICLLTRGRRTASVRADTYC-RLYSLS  165 (193)
T ss_dssp             CTTCEEECTTSBCCEEEEEEECCEEEEC-CC-CEEEECTTCEECHHHHHHCSBCSSEEEESSCE-EEEEEE
T ss_pred             ccCceecccCCCCcceeEeeeeeEEeecCCc-ceeeeccceeeeeeeccCCCcccccceecCce-EEEEEe
Confidence            455554443  25899999999999998887 578999999883   21222  3444445554 455544

>d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.02  E-value=0.09  Score=29.77  Aligned_cols=62  Identities=16%  Similarity=0.246  Sum_probs=41.0

Q ss_pred             CceEEEec--CceEEEEEEecEEEEEeCCCceEEEECCCcEEE----E-cCCCeEEEEEeeeEEEEEEEec
Q 037642            5 PGKFQLKF--DAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVT----I-PKGLSCTWDVSVAVDKYYKFES   68 (74)
Q Consensus         5 pg~~~~~~--~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~----~-p~g~~~~~~~~~~~~k~y~~~~   68 (74)
                      ||..-++.  ..+.+++|++|.+.+...+. ....+++||.|=    + ..-...+..+.+++ .+|.+++
T Consensus        50 ~ge~I~~~gd~~~~~yiI~~G~v~v~~~~~-~~~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~-~l~~i~~  118 (136)
T d1ne6a1          50 AGETVIQQGDEGDNFYVIDQGEMDVYVNNE-WATSVGEGGSFGELALIYGTPRAATVKAKTNV-KLWGIDR  118 (136)
T ss_dssp             TTCEEECTTSCCCEEEEEEESCEEEEETTE-EEEEECTTCEECCHHHHHCCCCCSEEEESSCE-EEEEEEH
T ss_pred             CCCEEEeCCCCcceeeeecCCceeeecccc-ccceeccccccccHHHcCCCcceEEEEEccCE-EEEEEEH
Confidence            44444443  24789999999999999886 578899999873    2 22224455556665 5666543

>d1tq5a1 b.82.1.12 (A:1-231) Hypothetical protein YhhW {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Pirin-like
domain: Hypothetical protein YhhW
species: Escherichia coli [TaxId: 562]

Probab=93.68  E-value=0.23  Score=30.64  Aligned_cols=47  Identities=17%  Similarity=0.210  Sum_probs=36.7

Q ss_pred             ceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEEEe
Q 037642           14 AEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFE   67 (74)
Q Consensus        14 ~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~~   67 (74)
                      ..-++||++|++++  ++    ..+.+||.+.|..+...+.+..++. ++.++.
T Consensus       181 ~~~~lyvi~G~l~i--~g----~~l~~gd~~~l~~~~~l~i~A~~~a-~~LL~~  227 (231)
T d1tq5a1         181 RRVWIQVVKGNVTI--NG----VKASTSDGLAIWDEQAISIHADSDS-EVLLFD  227 (231)
T ss_dssp             CEEEEEEEESEEEE--TT----EEEETTCEEEEESCSCEEEEESSSE-EEEEEE
T ss_pred             ccEEEEEEeeEEEE--CC----EEccCCCeEEECCCCeEEEEECCCC-EEEEEE
Confidence            45689999999876  44    3689999999999988888887775 555554

>d1ylla1 b.82.1.17 (A:2-196) Hypothetical protein PA5104 {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: PA5104-like
domain: Hypothetical protein PA5104
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.14  E-value=0.19  Score=31.18  Aligned_cols=65  Identities=11%  Similarity=0.129  Sum_probs=49.5

Q ss_pred             CceEEEecCceEEEEEEecE-EEEEeCCCceEEEECCCcEEEEcCCCeEEEEEe-eeEEEEEEEecCC
Q 037642            5 PGKFQLKFDAEETCYLLKGK-VKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVS-VAVDKYYKFESTS   70 (74)
Q Consensus         5 pg~~~~~~~~~E~~~vleG~-~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~-~~~~k~y~~~~~~   70 (74)
                      .|.|..-...+-+..+|+|. +.+..++. +...+.|++.+.|+.+.....+.. ++++.+=++.+.+
T Consensus        49 ~gpFS~FpgidR~l~vl~G~g~~L~~~~~-~~~~~~~~~~~~F~Gd~~~~a~L~~Gpi~dfNlM~rr~  115 (195)
T d1ylla1          49 SGGFSGFAGYQRIISVLEGGGMRLRVDGA-ESAPLRARQAFAFSGDSEVHCTLLDGAIRDFNLIYAPR  115 (195)
T ss_dssp             CEEECCCTTCEEEEEEEESSCEEEEETTE-ECCCBCBTCCEEEETTSCEEEEESSSCEEEEEEEECTT
T ss_pred             CCCCCCCCCccEEEEEEECCeEEEEECCc-cEeecCCCCccCcCCCCcEEEEeCCCCEEEEEEEEeCC
Confidence            34454444579999999998 77877774 456689999999999999998866 4787777766543

>d2ixca1 b.82.1.1 (A:1-198) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.79  E-value=0.58  Score=28.71  Aligned_cols=57  Identities=12%  Similarity=0.048  Sum_probs=43.9

Q ss_pred             CceEEEEEEecEEEEEeCCC---------ceEEEECCC--cEEEEcCCCeEEEEEeee-EEEEEEEecC
Q 037642           13 DAEETCYLLKGKVKVYPKGS---------SDWVEFGAG--DLVTIPKGLSCTWDVSVA-VDKYYKFEST   69 (74)
Q Consensus        13 ~~~E~~~vleG~~~~~~~~g---------~e~~~~~~G--D~v~~p~g~~~~~~~~~~-~~k~y~~~~~   69 (74)
                      .+..++.|+.|++...+-+-         ...+.|.+.  -.++||+|.-|-+.+.+. ..-.|.++..
T Consensus        69 ~q~Klv~~i~G~I~dvvvDlR~~S~Tfgk~~~~~L~~~~~~~i~IP~G~aHGf~~L~~~~~i~Y~~s~~  137 (198)
T d2ixca1          69 SQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHGFLALQDNSTVMYLCSAE  137 (198)
T ss_dssp             CCCEEEEEEESEEEEEEECCCBTCTTTTCEEEEEEETTTCCEEEECTTCEEEEEECSSSEEEEEEESSC
T ss_pred             hhhhhhhhhhceEEEEEEecccccccCCcEEEEEeecCCcceEEEcCCcEEEEEeecCcceeecccCCc
Confidence            47899999999998885221         124667664  499999999999998776 7788887654

>d2ixha1 b.82.1.1 (A:1-184) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.68  E-value=0.58  Score=28.36  Aligned_cols=57  Identities=16%  Similarity=0.056  Sum_probs=42.2

Q ss_pred             CceEEEEEEecEEEEEeCC---------CceEEEECC--CcEEEEcCCCeEEEEEeee-EEEEEEEecC
Q 037642           13 DAEETCYLLKGKVKVYPKG---------SSDWVEFGA--GDLVTIPKGLSCTWDVSVA-VDKYYKFEST   69 (74)
Q Consensus        13 ~~~E~~~vleG~~~~~~~~---------g~e~~~~~~--GD~v~~p~g~~~~~~~~~~-~~k~y~~~~~   69 (74)
                      .+..++.|++|.+...+-+         .-..+.|.+  +.+++||+|.-|-+.+.+. ..-.|.++..
T Consensus        71 ~q~Klv~~i~G~I~dvvvDlR~~S~Tfgk~~~~~L~~~~~~~l~IP~G~aHGf~~L~~~~~v~Y~~s~~  139 (184)
T d2ixha1          71 AQGKLVRATLGEVFDVAVDLRRGSPTFGQWVGERLSAENKRQMWIPAGFAHGFVVLSEYAEFLYKTTDF  139 (184)
T ss_dssp             CCCEEEEEEESEEEEEEEECBTTSTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSEEEEEEEESSC
T ss_pred             hhheecceeeeEEEEEEeecccCCCCCCceEEeeecccCccEEEecCCeEEEEEecCCceEEEeccccc
Confidence            4679999999999765422         123467766  5589999999999998754 6677777543

>d1ft9a2 b.82.3.1 (A:2-133) CO-sensing protein CooA, N-terminal domain {Rhodospirillum rubrum [TaxId: 1085]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: CO-sensing protein CooA, N-terminal domain
domain: CO-sensing protein CooA, N-terminal domain
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=91.84  E-value=0.39  Score=26.60  Aligned_cols=60  Identities=13%  Similarity=0.268  Sum_probs=37.0

Q ss_pred             CceEEEec--CceEEEEEEecEEEEEeC-CCceE--EEECCCcEEEEcCCCeEEEEEeeeEEEEEEEe
Q 037642            5 PGKFQLKF--DAEETCYLLKGKVKVYPK-GSSDW--VEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFE   67 (74)
Q Consensus         5 pg~~~~~~--~~~E~~~vleG~~~~~~~-~g~e~--~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~~   67 (74)
                      +|.+-+..  ..+.+++|++|.+.+... +|++.  ..+.|||++-.+.  ..+.+..+++ .++.+.
T Consensus        29 kG~~i~~~g~~~~~ly~v~~G~v~~~~~~~g~e~~l~~~~~g~~f~~~~--~~~v~A~~~s-~v~~i~   93 (132)
T d1ft9a2          29 KGSLVCTGEGDENGVFVVVDGRLRVYLVGEEREISLFYLTSGDMFCMHS--GCLVEATERT-EVRFAD   93 (132)
T ss_dssp             TTCEEECTTCCCCCEEEEEESEEEEEEEETTEEEEEEEEETTCEEESCS--SCEEEESSCE-EEEEEC
T ss_pred             CCcEEECCCCCCCEEEEEEeCeEeeeccccccceeeccccccccccccc--cccceeccce-eeeeeh
Confidence            44443333  368999999999997542 23221  3488999875544  5566666666 344443

>d1dzra_ b.82.1.1 (A:) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Salmonella typhimurium [TaxId: 90371]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Salmonella typhimurium [TaxId: 90371]

Probab=91.13  E-value=0.9  Score=27.38  Aligned_cols=57  Identities=16%  Similarity=0.075  Sum_probs=42.6

Q ss_pred             CceEEEEEEecEEEEEeCCC---------ceEEEECCC--cEEEEcCCCeEEEEEeee-EEEEEEEecC
Q 037642           13 DAEETCYLLKGKVKVYPKGS---------SDWVEFGAG--DLVTIPKGLSCTWDVSVA-VDKYYKFEST   69 (74)
Q Consensus        13 ~~~E~~~vleG~~~~~~~~g---------~e~~~~~~G--D~v~~p~g~~~~~~~~~~-~~k~y~~~~~   69 (74)
                      .+..++.|++|.+...+-+-         ...+.+.+.  ..++||+|.-|-+.+.+. ..-.|.++..
T Consensus        70 ~q~Klv~~i~G~I~dvvvDlR~~S~t~g~~~~~~L~~~~~~~l~IP~G~aHGf~~l~~~~~i~Y~~~~~  138 (183)
T d1dzra_          70 AQGKLVRCAVGEVFDVAVDIRKESPTFGQWVGVNLSAENKRQLWIPEGFAHGFVTLSEYAEFLYKATNY  138 (183)
T ss_dssp             CCCEEEEEEESEEEEEEEECCTTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSEEEEEEEESSC
T ss_pred             chhhheeeccccEEEEEEeccCCCCCCCcEEEEeecCCCceEEEEcCCeEEEEEEecCcceEEEeCCcc
Confidence            36799999999998775221         134667664  599999999999999865 6677776543

>d1zx5a1 b.82.1.3 (A:1-299) Putative mannosephosphate isomerase AF0035 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Type I phosphomannose isomerase
domain: Putative mannosephosphate isomerase AF0035
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.02  E-value=0.078  Score=34.46  Aligned_cols=20  Identities=20%  Similarity=0.177  Sum_probs=18.3

Q ss_pred             eEEEECCCcEEEEcCCCeEE
Q 037642           34 DWVEFGAGDLVTIPKGLSCT   53 (74)
Q Consensus        34 e~~~~~~GD~v~~p~g~~~~   53 (74)
                      ..+.++|||+++||+|+.|.
T Consensus       157 n~v~v~~Gd~i~IpaGtvHA  176 (299)
T d1zx5a1         157 NTFETTPYDTFVIRPGIPHA  176 (299)
T ss_dssp             EEEECCTTCEEEECTTCCEE
T ss_pred             cEEEcccCCEEEeCCCCcEE
Confidence            35889999999999999998

>d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.63  E-value=0.74  Score=25.52  Aligned_cols=63  Identities=14%  Similarity=0.135  Sum_probs=38.6

Q ss_pred             CCceEEEec--CceEEEEEEecEEEEEeCCC----------ceEEEECCCcEE-----EEcCCCeEEEEEeeeEEEEEEE
Q 037642            4 SPGKFQLKF--DAEETCYLLKGKVKVYPKGS----------SDWVEFGAGDLV-----TIPKGLSCTWDVSVAVDKYYKF   66 (74)
Q Consensus         4 ~pg~~~~~~--~~~E~~~vleG~~~~~~~~g----------~e~~~~~~GD~v-----~~p~g~~~~~~~~~~~~k~y~~   66 (74)
                      .||.+-+..  ..+.+++|++|.+.+.....          .....+.+||.+     +-..-...+..+.+++ .++.+
T Consensus        31 ~~ge~i~~~G~~~~~~y~i~~G~v~v~~~~~~~~~~~~~~~~~i~~~~~g~~fGe~~~~~~~~~~~t~~a~~~~-~~~~i  109 (147)
T d1cx4a2          31 NDGEQIIAQGDSADSFFIVESGEVRITMKRKGKSDIEENGAVEIARCLRGQYFGELALVTNKPRAASAHAIGTV-KCLAM  109 (147)
T ss_dssp             CTTCEEECTTCCCCEEEEEEEEEEEEEEEC--------CCEEEEEEECTTCEESCHHHHHTCCCSSEEEEEEEE-EEEEE
T ss_pred             CCCCEEEeCCCCCceeEEEecceEEEEEecCCCccccccceeeeeeccCCcEeeehhhcCCCCceEEEEECCCE-EEEEE
Confidence            456655543  35899999999999864221          113567899987     2233345566666665 55555


Q ss_pred             e
Q 037642           67 E   67 (74)
Q Consensus        67 ~   67 (74)
                      .
T Consensus       110 ~  110 (147)
T d1cx4a2         110 D  110 (147)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1ep0a_ b.82.1.1 (A:) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=90.32  E-value=1.1  Score=26.94  Aligned_cols=56  Identities=13%  Similarity=0.094  Sum_probs=41.5

Q ss_pred             ceEEEEEEecEEEEEeCCC---------ceEEEECC--CcEEEEcCCCeEEEEEeee-EEEEEEEecC
Q 037642           14 AEETCYLLKGKVKVYPKGS---------SDWVEFGA--GDLVTIPKGLSCTWDVSVA-VDKYYKFEST   69 (74)
Q Consensus        14 ~~E~~~vleG~~~~~~~~g---------~e~~~~~~--GD~v~~p~g~~~~~~~~~~-~~k~y~~~~~   69 (74)
                      +..++.|++|.+...+-+-         -..+.+.+  +.+++||+|.-|-+.+.+. ..-.|.+...
T Consensus        69 q~Klv~~~~G~I~dv~vD~R~~S~tfgk~~~~~L~~~~~~~l~IP~G~aHGf~~L~d~~~i~Y~~s~~  136 (183)
T d1ep0a_          69 QGKLVRVIRGEIFDVAVDLRKNSDTYGEWTGVRLSDENRREFFIPEGFAHGFLALSDECIVNYKCTEL  136 (183)
T ss_dssp             CCEEEEEEESEEEEEEEECCTTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSEEEEEEEESSC
T ss_pred             HHhhhcccccEEEEEEEeccCCCCcCCeeeEEEecCCCcceeEecCCceeeeeeccCceEEEEeccCC
Confidence            5889999999998775321         13356766  5589999999999999754 6667776543

>d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory domain of Epac2, domains 1 and 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.30  E-value=0.4  Score=26.16  Aligned_cols=55  Identities=15%  Similarity=0.124  Sum_probs=34.9

Q ss_pred             ceEEEEEEecEEEEEeCCCceEEEECCCcEEEE---cCCCeEEEEEe--eeEEEEEEEec
Q 037642           14 AEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTI---PKGLSCTWDVS--VAVDKYYKFES   68 (74)
Q Consensus        14 ~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~---p~g~~~~~~~~--~~~~k~y~~~~   68 (74)
                      .+.+++|++|.+.+...+......+++||.|=-   =.|.+..+.+.  +..-.+|.+++
T Consensus        52 ~~~lyii~~G~v~~~~~~~~~~~~~~~G~~fGe~~ll~~~~r~~t~~a~~~~~~l~~i~~  111 (124)
T d1o7fa3          52 GTSWYIILKGSVNVVIYGKGVVCTLHEGDDFGKLALVNDAPRAASIVLREDNCHFLRVDK  111 (124)
T ss_dssp             CCEEEEEEESEEEEEETTTEEEEEEETTCEECGGGGTCCSCCSSEEEESSSSEEEEEEEH
T ss_pred             CceEEEEEcceEEEEEeeeeecccccCCcchhhhHhhCCCceeeEEEEEeCcEEEEEEcH
Confidence            578999999999998877644567889998722   22444433333  33225555543

>d1tq5a1 b.82.1.12 (A:1-231) Hypothetical protein YhhW {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Pirin-like
domain: Hypothetical protein YhhW
species: Escherichia coli [TaxId: 562]

Probab=90.26  E-value=1  Score=27.50  Aligned_cols=51  Identities=22%  Similarity=0.291  Sum_probs=42.0

Q ss_pred             Cce-EEE--ecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEE
Q 037642            5 PGK-FQL--KFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDV   56 (74)
Q Consensus         5 pg~-~~~--~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~   56 (74)
                      ||. |..  |.+.+-+-|||+|.+.=.+.-|+ ...+++||+-.+-+|.-....-
T Consensus        50 pg~gf~~HpH~g~eivT~vl~G~~~H~DS~G~-~~~i~~G~vq~mtAG~Gi~HsE  103 (231)
T d1tq5a1          50 AGQGFGTHPHKDMEILTYVLEGTVEHQDSMGN-KEQVPAGEFQIMSAGTGIRHSE  103 (231)
T ss_dssp             TTCEEEEEEECSCEEEEEEEESEEEEEESSSC-EEEEETTCEEEEECTTCEEEEE
T ss_pred             CCCCCCCCCcCCeeEEEEEEeEEEEECCCCCC-cEEECCCcEEEEecCCcEEEEe
Confidence            443 644  46778889999999999998884 6899999999999999888754

>d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Putative ion channel CnbD
species: Mesorhizobium loti [TaxId: 381]

Probab=89.80  E-value=0.35  Score=26.75  Aligned_cols=59  Identities=20%  Similarity=0.362  Sum_probs=38.4

Q ss_pred             CceEEEec--CceEEEEEEecEEEEEeCCCceEEEECCCcEEE----E-cCCCeEEEEEeeeEEEEEEEe
Q 037642            5 PGKFQLKF--DAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVT----I-PKGLSCTWDVSVAVDKYYKFE   67 (74)
Q Consensus         5 pg~~~~~~--~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~----~-p~g~~~~~~~~~~~~k~y~~~   67 (74)
                      ||..-+..  ..+.+++|++|.+.+...++   ..+.+||++-    + ..-...+..+.+++ .+|.+.
T Consensus        41 ~g~~i~~~G~~~~~~y~I~~G~v~v~~~~~---~~l~~G~~~G~~~~l~~~~~~~~~~a~~~~-~i~~i~  106 (133)
T d1vp6a_          41 AGAVICRIGEPGDRMFFVVEGSVSVATPNP---VELGPGAFFGEMALISGEPRSATVSAATTV-SLLSLH  106 (133)
T ss_dssp             TTCEEECTTSCCCEEEEEEESCEEECSSSC---EEECTTCEECHHHHHHCCCCSSCEEESSSE-EEEEEE
T ss_pred             CCCEEEeCCCCCccceeeeccccEEEEeee---eeeccCcccccccccCCCcccceEEECCCE-EEEEEe
Confidence            44443432  35799999999999988875   4699999882    2 22234455666664 555554

>d2c0za1 b.82.1.1 (A:1-190) Novobiocin biosynthesis protein NovW {Streptomyces caeruleus [TaxId: 195949]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: Novobiocin biosynthesis protein NovW
species: Streptomyces caeruleus [TaxId: 195949]

Probab=89.49  E-value=1.3  Score=26.74  Aligned_cols=57  Identities=11%  Similarity=0.048  Sum_probs=41.9

Q ss_pred             CceEEEEEEecEEEEEeCCCc---------eEEEE--CCCcEEEEcCCCeEEEEEee-eEEEEEEEecC
Q 037642           13 DAEETCYLLKGKVKVYPKGSS---------DWVEF--GAGDLVTIPKGLSCTWDVSV-AVDKYYKFEST   69 (74)
Q Consensus        13 ~~~E~~~vleG~~~~~~~~g~---------e~~~~--~~GD~v~~p~g~~~~~~~~~-~~~k~y~~~~~   69 (74)
                      .+..++.|++|.+...+-+-.         ..+.+  +.+.+++||+|.-|-+.+.+ ...-.|.++..
T Consensus        69 ~q~Klv~~i~G~i~dv~vDlR~~S~t~gk~~~~~l~~~~~~~l~IP~G~aHGf~~L~~~t~i~Y~~s~~  137 (190)
T d2c0za1          69 GQAKYVTCVRGAVFDVVVDLRVGSPTYGCWEGTRLDDVSRRAVYLSEGIGHGFCAISDEATLCYLSSGT  137 (190)
T ss_dssp             CCCEEEEEEESEEEEEEEECCBTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSEEEEEEEESSC
T ss_pred             chhheeeeeeeeEEEEEEeeccccceeEEEeeeccccccceeEEecCCcEEEEeecCchheeEEecCCc
Confidence            468999999999988862210         12333  67899999999999998864 46677776543

>d1qwra_ b.82.1.3 (A:) Mannose-6-phosphate isomerase ManA {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Type I phosphomannose isomerase
domain: Mannose-6-phosphate isomerase ManA
species: Bacillus subtilis [TaxId: 1423]

Probab=89.17  E-value=0.15  Score=33.03  Aligned_cols=21  Identities=19%  Similarity=0.406  Sum_probs=18.6

Q ss_pred             eEEEECCCcEEEEcCCCeEEE
Q 037642           34 DWVEFGAGDLVTIPKGLSCTW   54 (74)
Q Consensus        34 e~~~~~~GD~v~~p~g~~~~~   54 (74)
                      ..+.++|||+++||+|..|..
T Consensus       154 n~~~l~~Gd~~~ipaG~~HA~  174 (315)
T d1qwra_         154 RRIKIKPGDFYYVPSGTLHAL  174 (315)
T ss_dssp             EEEECCTTCEEEECTTCCEEE
T ss_pred             cEEEcccCCEEEeCCCCeeEe
Confidence            357899999999999999985

>d1wlta1 b.82.1.1 (A:1-176) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=89.01  E-value=1.4  Score=26.28  Aligned_cols=56  Identities=13%  Similarity=0.204  Sum_probs=40.2

Q ss_pred             CceEEEEEEecEEEEEeCCC---------ceEEEEC--CCcEEEEcCCCeEEEEEeee-EEEEEEEec
Q 037642           13 DAEETCYLLKGKVKVYPKGS---------SDWVEFG--AGDLVTIPKGLSCTWDVSVA-VDKYYKFES   68 (74)
Q Consensus        13 ~~~E~~~vleG~~~~~~~~g---------~e~~~~~--~GD~v~~p~g~~~~~~~~~~-~~k~y~~~~   68 (74)
                      .+..+++|+.|++...+-+-         ...+.|.  .+.+++||+|.-|-+.+.+. ..-.|.++.
T Consensus        68 ~q~Klv~ci~G~I~dvvvDlR~~S~Tfgk~~~~~L~~~~~~~l~IP~G~ahGf~~l~d~~~i~Y~~~~  135 (176)
T d1wlta1          68 EQGKIIFVPKGRILDVAVDVRKSSPTFGKYVKAELNEENHYMLWIPPGFAHGFQALEDSIVIYFITHN  135 (176)
T ss_dssp             CCEEEEEEEESEEEEEEEECBTTSTTTTCEEEEEEETTTCCEEEECTTEEEEEEESSSEEEEEEEESS
T ss_pred             CccEEEEEeccceEEEEEeeccCCCccceeeeEEeeccccceEEEccceeeEEeeccccceEEEecCC
Confidence            36789999999998776211         1235565  46699999999999999876 444555543

>d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein, N-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Catabolite gene activator protein, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=88.02  E-value=1.1  Score=24.19  Aligned_cols=53  Identities=23%  Similarity=0.332  Sum_probs=33.8

Q ss_pred             ceEEEEEEecEEEEEe--CCCceE--EEECCCcEEE----EcCCC--eEEEEEeeeEEEEEEEe
Q 037642           14 AEETCYLLKGKVKVYP--KGSSDW--VEFGAGDLVT----IPKGL--SCTWDVSVAVDKYYKFE   67 (74)
Q Consensus        14 ~~E~~~vleG~~~~~~--~~g~e~--~~~~~GD~v~----~p~g~--~~~~~~~~~~~k~y~~~   67 (74)
                      .+.+++|++|.+.+..  .+|.+.  ..+.+||++-    +..+.  ..+..+.+++ .+|.++
T Consensus        31 ~~~iy~i~~G~v~~~~~~~~g~e~~l~~~~~G~~~G~~~~~~~~~~~~~~~~a~~~~-~v~~i~   93 (132)
T d1i5za2          31 AETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTAC-EVAEIS   93 (132)
T ss_dssp             CCEEEEEEECCEEEEEECTTCCEEEEEEECTTCEESCTTTTSSSCBCCSEEEESSCE-EEEEEE
T ss_pred             CCEEEEEEEccceeeeccccchhhhhhhhCcccccchHHHhcCCccceEEEEEccce-EEEEEc
Confidence            5899999999998773  344222  3479999973    43333  4555666665 445444

>d1ylla1 b.82.1.17 (A:2-196) Hypothetical protein PA5104 {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: PA5104-like
domain: Hypothetical protein PA5104
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.84  E-value=1.1  Score=27.50  Aligned_cols=36  Identities=11%  Similarity=0.034  Sum_probs=30.0

Q ss_pred             eEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCe
Q 037642           15 EETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLS   51 (74)
Q Consensus        15 ~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~   51 (74)
                      .-+.|++.|.+.+..+++ ....+.+||.+.+.....
T Consensus       138 ~~ll~~~~G~~~v~~~g~-~~~~L~~~d~L~~~~~~~  173 (195)
T d1ylla1         138 TLLLFAQQDGVAISLQGQ-PRGQLAAHDCLCAEGLQG  173 (195)
T ss_dssp             EEEEEESSSCEEEEETTE-EEEEECTTCEEEEESCCS
T ss_pred             EEEEEEccCcEEEEcCCC-ceEecCCCcEEEEeCCCC
Confidence            557888999999999986 578999999999965543

>d1pmia_ b.82.1.3 (A:) Phosphomannose isomerase {Yeast (Candida albicans) [TaxId: 5476]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Type I phosphomannose isomerase
domain: Phosphomannose isomerase
species: Yeast (Candida albicans) [TaxId: 5476]

Probab=87.77  E-value=0.25  Score=33.58  Aligned_cols=21  Identities=10%  Similarity=0.136  Sum_probs=18.9

Q ss_pred             EEEECCCcEEEEcCCCeEEEE
Q 037642           35 WVEFGAGDLVTIPKGLSCTWD   55 (74)
Q Consensus        35 ~~~~~~GD~v~~p~g~~~~~~   55 (74)
                      .+.++|||++++|+|..|..-
T Consensus       267 ~v~l~pGdaifvpaG~~HAyl  287 (440)
T d1pmia_         267 HVGLNKGEAMFLQAKDPHAYI  287 (440)
T ss_dssp             EEEECTTCEEEECTTCCEEEE
T ss_pred             eecccccceEEcCCCCceEec
Confidence            478999999999999999873

>d1oi6a_ b.82.1.1 (A:) dTDP-4-keto-6-deoxy-glucose-5-epimerase EvaD {Amycolatopsis orientalis [TaxId: 31958]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-keto-6-deoxy-glucose-5-epimerase EvaD
species: Amycolatopsis orientalis [TaxId: 31958]

Probab=87.68  E-value=1.9  Score=26.30  Aligned_cols=55  Identities=16%  Similarity=0.130  Sum_probs=41.2

Q ss_pred             ceEEEEEEecEEEEEeCCC---------ceEEEECC--CcEEEEcCCCeEEEEEeee-EEEEEEEec
Q 037642           14 AEETCYLLKGKVKVYPKGS---------SDWVEFGA--GDLVTIPKGLSCTWDVSVA-VDKYYKFES   68 (74)
Q Consensus        14 ~~E~~~vleG~~~~~~~~g---------~e~~~~~~--GD~v~~p~g~~~~~~~~~~-~~k~y~~~~   68 (74)
                      ...++.|++|++...+-+-         -..+.|.+  +..++||+|.-|-+.+.+. ..-.|.++.
T Consensus        71 q~Klv~ci~G~i~dv~vD~R~~SpTfg~~~~~~L~~~~~~~l~IP~G~aHGf~~L~d~t~v~Y~~s~  137 (202)
T d1oi6a_          71 TAKYVYCARGKAMDIVIDIRVGSPTFGQWDSVLMDQQDPRAVYLPVGVGHAFVALEDDTVMSYMLSR  137 (202)
T ss_dssp             CCEEEEEEESCEEEEEECCCBTCTTTTCEEEEEECSSSCCEEEECTTCEEEEEECSTTEEEEEEESS
T ss_pred             hhheeeeccccEEEEEEecccCCCccceeeeeecccccceeEEeccceeEEEeeccccceeEEecCC
Confidence            5799999999999887331         12355665  4689999999999999874 556677654

>d1s4ca1 b.82.2.7 (A:1-143) Hypothetical protein HI0227 {Haemophilus influenzae [TaxId: 727]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: YhcH-like
domain: Hypothetical protein HI0227
species: Haemophilus influenzae [TaxId: 727]

Probab=87.56  E-value=1.2  Score=25.66  Aligned_cols=49  Identities=10%  Similarity=-0.029  Sum_probs=33.5

Q ss_pred             ceEEEecCceEEEEEEecEEEEEeCC--C----------------------ceEEEECCCcEEEEcCCCeEEE
Q 037642            6 GKFQLKFDAEETCYLLKGKVKVYPKG--S----------------------SDWVEFGAGDLVTIPKGLSCTW   54 (74)
Q Consensus         6 g~~~~~~~~~E~~~vleG~~~~~~~~--g----------------------~e~~~~~~GD~v~~p~g~~~~~   54 (74)
                      ..|..|..+-.+.++|+|+=.+....  +                      ...+.+++|+.++|=++..|.=
T Consensus        60 ~~~E~H~~YiDIq~vl~G~E~i~~~~~~~~~~~~~~y~~~~D~~f~~~~~~~~~i~l~~G~f~iFfP~D~H~P  132 (143)
T d1s4ca1          60 KKAELHHEYLDVQVLIRGTENIEVGATYPNLSKYEDYNEADDYQLCADIDDKFTVTMKPKMFAVFYPYEPHKP  132 (143)
T ss_dssp             SCEEECSSEEEEEEEEESCEEEEECCSCCCGGGSCCCBTTTTBEEESCCTTCEEEEECTTEEEEECTTCCEEE
T ss_pred             cccccccceEEEEEEeeCceEEEEecCCCCcccccccCcccCEEeecCCCcceEEEeCCCeEEEECCCCcccc
Confidence            34677888889999999987665311  0                      0235678888877777777763

>d3dl3a1 b.82.2.13 (A:5-100) Tellurite resistance protein B, TehB {Vibrio fischeri [TaxId: 668]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: TehB-like
domain: Tellurite resistance protein B, TehB
species: Vibrio fischeri [TaxId: 668]

Probab=87.01  E-value=1.4  Score=24.16  Aligned_cols=48  Identities=19%  Similarity=0.177  Sum_probs=37.9

Q ss_pred             ceEEEEEEecEEEEEe---CC---CceEEEECCCcEEEEcCCCeEEEEEeeeEE
Q 037642           14 AEETCYLLKGKVKVYP---KG---SSDWVEFGAGDLVTIPKGLSCTWDVSVAVD   61 (74)
Q Consensus        14 ~~E~~~vleG~~~~~~---~~---g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~   61 (74)
                      ......||+|.+.+..   +.   ......+.+|+.-++|+...|.-+.+++++
T Consensus        34 vwg~i~Vl~G~L~y~~~~d~~~~e~~~~~~~~~g~~~~~~Pq~wH~Ve~sdD~~   87 (96)
T d3dl3a1          34 VFGQICVMEGVVTYYGFANSEATEPEIKVVINAGQFATSPPQYWHRIELSDDAQ   87 (96)
T ss_dssp             EEEEEEEEESEEEEEEESSTTCCSCSEEEEEETTEEEEECTTCEEEEEECTTCE
T ss_pred             eEEEEEEEEEEEEEEEeccCCCCcccEEEEecCCCcceeCCCccEEEEeCCCeE
Confidence            4677889999999853   11   124588999999999999999999877763

>d3bb6a1 b.82.2.13 (A:1-109) Uncharacterized protein YeaR {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: TehB-like
domain: Uncharacterized protein YeaR
species: Escherichia coli [TaxId: 562]

Probab=86.88  E-value=1.5  Score=24.64  Aligned_cols=46  Identities=15%  Similarity=0.158  Sum_probs=35.9

Q ss_pred             ceEEEEEEecEEEEEe--C-CC---ceEEEECCCcEEEEcCCCeEEEEEeee
Q 037642           14 AEETCYLLKGKVKVYP--K-GS---SDWVEFGAGDLVTIPKGLSCTWDVSVA   59 (74)
Q Consensus        14 ~~E~~~vleG~~~~~~--~-~g---~e~~~~~~GD~v~~p~g~~~~~~~~~~   59 (74)
                      ......||+|.+++..  + ++   +..+.+.+|+.-++|+...|.-+...+
T Consensus        39 vwg~l~Vl~G~L~y~~~~d~~~~~~e~~~~~~ag~~~~~~Pq~wH~Ve~lsd   90 (109)
T d3bb6a1          39 VYPRLSVMHGAVKYLGYADEHSAEPDQVILIEAGQFAVFPPEKWHNIEAMTD   90 (109)
T ss_dssp             EEEEEEEEESEEEEEEESSTTCSSCSEEEEEEBTBEEECCSSCEEEEEESST
T ss_pred             EEEEEEEEEEEEEEEEeccCCCCCcceEEEecCCCceeeCCCccEEeEECCC
Confidence            4677889999999862  2 11   235789999999999999999996554

>d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Cow (Bos taurus) [TaxId: 9913]

Probab=86.85  E-value=1.1  Score=24.35  Aligned_cols=64  Identities=16%  Similarity=0.171  Sum_probs=39.2

Q ss_pred             CCceEEEec--CceEEEEEEecEEEEEe--CCCce---EEEECCCcEEEE-----cCCCeEEEEEeeeEEEEEEEec
Q 037642            4 SPGKFQLKF--DAEETCYLLKGKVKVYP--KGSSD---WVEFGAGDLVTI-----PKGLSCTWDVSVAVDKYYKFES   68 (74)
Q Consensus         4 ~pg~~~~~~--~~~E~~~vleG~~~~~~--~~g~e---~~~~~~GD~v~~-----p~g~~~~~~~~~~~~k~y~~~~   68 (74)
                      .+|..-+..  ..+.+++|++|.+.+..  +++.+   ...+++||++-.     ......+..+.+++ .+|.+.+
T Consensus        31 ~~g~~I~~~Gd~~~~~yii~~G~v~~~~~~~~~~~~~~~~~~~~g~~fG~~~~~~~~~~~~t~~a~~~~-~~~~i~~  106 (132)
T d1ne6a2          31 EDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYFGEIALLMNRPRAATVVARGPL-KCVKLDR  106 (132)
T ss_dssp             CTTCEEECTTSCCCEEEEEEECCEEEEEESSSSCCEEEEEEECTTCEECHHHHHHTSSCSSEEEESSCE-EEEEEEH
T ss_pred             CCCCEEEEcCCcchHHHHHHhhhheeeccCCccccchhhhhccccceeeEeeecCCCceeEEEEEcccE-EEEEEEH
Confidence            355544443  35899999999998765  33322   346889998843     22234455666664 6666654

>d1j1la_ b.82.1.12 (A:) Pirin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Pirin-like
domain: Pirin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.74  E-value=1.4  Score=27.65  Aligned_cols=44  Identities=14%  Similarity=0.132  Sum_probs=35.7

Q ss_pred             CceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEee
Q 037642           13 DAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSV   58 (74)
Q Consensus        13 ~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~   58 (74)
                      ...-+.|+++|.+.+.....  ...+.+++++++.+|...+.+...
T Consensus       187 ~~~~~lyvi~G~~~v~g~~~--~~~l~~~~~~~l~~gd~~~i~~~~  230 (288)
T d1j1la_         187 GWTSFIYTISGDVYIGPDDA--QQKIEPHHTAVLGEGDSVQVENKD  230 (288)
T ss_dssp             TCEEEEEEEESCEEESCTTS--CEEECTTEEEEECSCSEEEEECCS
T ss_pred             CCeEEEEEEEeeEEecCccc--ceeecCceEEEEcCCCeEEEEeCC
Confidence            46789999999999987774  468999999999998887766543

>d1nxma_ b.82.1.1 (A:) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Streptococcus suis [TaxId: 1307]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Streptococcus suis [TaxId: 1307]

Probab=85.64  E-value=2.5  Score=25.57  Aligned_cols=55  Identities=16%  Similarity=0.125  Sum_probs=40.0

Q ss_pred             ceEEEEEE-ecEEEEEeCCC--------ceEEEECCCcEEEEcCCCeEEEEEeee-EEEEEEEec
Q 037642           14 AEETCYLL-KGKVKVYPKGS--------SDWVEFGAGDLVTIPKGLSCTWDVSVA-VDKYYKFES   68 (74)
Q Consensus        14 ~~E~~~vl-eG~~~~~~~~g--------~e~~~~~~GD~v~~p~g~~~~~~~~~~-~~k~y~~~~   68 (74)
                      ....+.++ .|.+...+.+-        ...+.+.++..++||+|.-|-+.+.+. ..-.|.++.
T Consensus        77 ~~k~v~~~~~G~i~~V~vD~R~S~t~g~~~~~~l~~~~~i~IP~G~aHGf~tL~d~t~i~Y~~s~  141 (194)
T d1nxma_          77 WDKYISVADGGKVLGTWVDLREGETFGNTYQTVIDASKSIFVPRGVANGFQVLSDFVAYSYLVND  141 (194)
T ss_dssp             SCEEEEECSSCCEEEEEEECBSSTTTTCEEEEEECTTEEEEECTTEEEEEEECSSEEEEEEEESS
T ss_pred             chhhhhhccccceeEEEEEeccccccceeeeeeeccCceEEEecceeeEEEeeccceeEEEecCc
Confidence            45666665 68776665422        134779999999999999999999875 666787754

>d3e5ua2 b.82.3.2 (A:9-147) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Chlorophenol reduction protein CprK
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=84.56  E-value=2  Score=23.57  Aligned_cols=52  Identities=19%  Similarity=0.274  Sum_probs=31.5

Q ss_pred             ceEEEEEEecEEEEEe--CCCceE--EEECCCcEEE-E-cCCCeEEEEEeeeEEEEEEE
Q 037642           14 AEETCYLLKGKVKVYP--KGSSDW--VEFGAGDLVT-I-PKGLSCTWDVSVAVDKYYKF   66 (74)
Q Consensus        14 ~~E~~~vleG~~~~~~--~~g~e~--~~~~~GD~v~-~-p~g~~~~~~~~~~~~k~y~~   66 (74)
                      .+.+++|++|.+.+..  .+|++.  ..+++||++- + ......+..+.+++ +++.+
T Consensus        42 ~~~~y~v~~G~v~~~~~~~~g~~~~l~~~~~g~~~g~~~~~~~~~~~~a~~~~-~v~~i   99 (139)
T d3e5ua2          42 ITSMIFLVEGKIKLDIIFEDGSEKLLYYAGGNSLIGKLYPTGNNIYATAMEPT-RTCWF   99 (139)
T ss_dssp             CCSEEEEEESEEEEEEECTTSCEEEEEEEETTCEECCCSCCSCEEEEEESSCE-EEEEE
T ss_pred             CCEEEEEEeccceEEEeeccccccceeeccccceeehhhhhcccccccccccc-eEEEe
Confidence            5889999999998743  444332  3589999873 1 12234444455554 44444

>d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=84.03  E-value=1.4  Score=24.04  Aligned_cols=41  Identities=12%  Similarity=0.230  Sum_probs=26.6

Q ss_pred             CCceEEEec--CceEEEEEEecEEEEEeCC-CceE--EEECCCcEE
Q 037642            4 SPGKFQLKF--DAEETCYLLKGKVKVYPKG-SSDW--VEFGAGDLV   44 (74)
Q Consensus         4 ~pg~~~~~~--~~~E~~~vleG~~~~~~~~-g~e~--~~~~~GD~v   44 (74)
                      .||..-+..  ..+.+++|++|.+.+.... +.+.  ..+.+||.+
T Consensus        45 ~~g~~I~~~G~~~~~~y~I~~G~v~v~~~~~~~~~~~~~l~~g~~f   90 (136)
T d1cx4a1          45 KEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRGSF   90 (136)
T ss_dssp             CTTCEEECTTSCCCEEEEEEECEEEEEEEETTEEEEEEEEESSCEE
T ss_pred             CCCCEEEECCCcchhhhhhhhheeEEeeccccceeeeeccCCcccc
Confidence            345443432  3589999999999886532 2122  358999986

>d1j1la_ b.82.1.12 (A:) Pirin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Pirin-like
domain: Pirin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.90  E-value=2.3  Score=26.62  Aligned_cols=50  Identities=24%  Similarity=0.262  Sum_probs=38.1

Q ss_pred             CceEEEe--cCceEEEEEEecE-EEEEeCCCceEEEECCCcEEEEcCCCeEEEE
Q 037642            5 PGKFQLK--FDAEETCYLLKGK-VKVYPKGSSDWVEFGAGDLVTIPKGLSCTWD   55 (74)
Q Consensus         5 pg~~~~~--~~~~E~~~vleG~-~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~   55 (74)
                      |+.|..|  .+.+-+-|||+|. +.=.+.-| ....+++||+-.+-+|.-....
T Consensus        48 ~~gf~~HPH~g~e~vTy~~~G~~~~H~Ds~G-~~~~i~~G~vq~mtAG~Gi~Hs  100 (288)
T d1j1la_          48 PGGFPDHPHRGFETVSYLLEGGSMAHEDFCG-HTGKMNPGDLQWMTAGRGILHA  100 (288)
T ss_dssp             TCBEEEEEEBSEEEEEEECSSSCEEEEETTS-CEEEECTTCEEEEECTTCEEEE
T ss_pred             CCCCCCCCcCCeEEEEEEEeCCeEEEecCCC-CeeEecCCCEEEEecccceEec
Confidence            4456544  5667778889984 66667666 4689999999999999877765

>d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Cyclic AMP receptor-like protein Vfr
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=83.68  E-value=2  Score=23.28  Aligned_cols=62  Identities=15%  Similarity=0.179  Sum_probs=36.7

Q ss_pred             CceEEEec--CceEEEEEEecEEEEEe--CCCceE--EEECCCcEEE----EcC-----CCeEEEEEeeeEEEEEEEe
Q 037642            5 PGKFQLKF--DAEETCYLLKGKVKVYP--KGSSDW--VEFGAGDLVT----IPK-----GLSCTWDVSVAVDKYYKFE   67 (74)
Q Consensus         5 pg~~~~~~--~~~E~~~vleG~~~~~~--~~g~e~--~~~~~GD~v~----~p~-----g~~~~~~~~~~~~k~y~~~   67 (74)
                      +|..-+..  ..+.+++|++|.+.+..  .+|.+.  ..+.|||++-    |..     -.+.+..+.+++ +++.+.
T Consensus        19 ~g~~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~~~~~~~~~~g~~~G~~~~~~~~~~~~~~~~~~~a~~~~-~vl~i~   95 (134)
T d2oz6a2          19 AKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLFEKEGSEQERSAWVRAKVEC-EVAEIS   95 (134)
T ss_dssp             TTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEESCTTTCC-----CBCCSEEEESSCE-EEEEEE
T ss_pred             CCCEEEeCCCcCCEEEEEEEcccceeeeecccccceeeeccCCCccchHHHhcCccccccceeEEEECCCE-EEEEEe
Confidence            44443333  35899999999998764  344222  3478999982    321     133456666666 555544

>d1we3o_ b.35.1.1 (O:) Chaperonin-10 (GroES) {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: GroES
domain: Chaperonin-10 (GroES)
species: Thermus thermophilus [TaxId: 274]

Probab=82.40  E-value=0.51  Score=25.56  Aligned_cols=30  Identities=20%  Similarity=0.314  Sum_probs=22.0

Q ss_pred             EECCCcEEEEcCCCeEEEEEeeeEEEEEEEec
Q 037642           37 EFGAGDLVTIPKGLSCTWDVSVAVDKYYKFES   68 (74)
Q Consensus        37 ~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~~~   68 (74)
                      .+++||.|+|++.....++..+  .++++++-
T Consensus        59 ~vkvGD~Vl~~~~~g~~v~~~g--~~y~ii~e   88 (96)
T d1we3o_          59 EVKEGDIVVFAKYGGTEIEIDG--EEYVILSE   88 (96)
T ss_dssp             SCCTTCEEEECTTCSEEEECSS--CEEEEECT
T ss_pred             eEEeCCEEEEccCCCcEEEECC--EEEEEEEH
Confidence            4889999999998888777643  34555543

>d1zyba2 b.82.3.2 (A:1-147) Probable transcription regulator BT4300, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Probable transcription regulator BT4300, N-terminal domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=81.42  E-value=2  Score=23.63  Aligned_cols=63  Identities=16%  Similarity=0.269  Sum_probs=37.4

Q ss_pred             CCceEEEec--CceEEEEEEecEEEEEeCC--Cce--EEEECCCcEEE----E-cCC-CeEEEEEeeeEEEEEEEe
Q 037642            4 SPGKFQLKF--DAEETCYLLKGKVKVYPKG--SSD--WVEFGAGDLVT----I-PKG-LSCTWDVSVAVDKYYKFE   67 (74)
Q Consensus         4 ~pg~~~~~~--~~~E~~~vleG~~~~~~~~--g~e--~~~~~~GD~v~----~-p~g-~~~~~~~~~~~~k~y~~~   67 (74)
                      .+|..-+..  ..+.+++|++|.+.+...+  |.+  ...+.+||++-    + ... ...+..+.+++ .++.+.
T Consensus        37 ~~g~~i~~~g~~~~~iy~i~~G~v~v~~~~~~g~~~~~~~~~~g~~fGe~~~~~~~~~~~~~v~a~~~~-~vl~i~  111 (147)
T d1zyba2          37 KAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIYTVIEQIEAPYLIEPQSLFGMNTNYASSYVAHTEV-HTVCIS  111 (147)
T ss_dssp             CTTCEEECTTSBCCEEEEEEESEEEEEEECGGGSCEEEEEEESSEEECGGGGSSSCCBCSSEEEESSCE-EEEEEE
T ss_pred             CCCCEEEeccCCccEEEEEecceEEEEEEcCCCCEEEEEEcCCCCEeccchhhcccccccceeeeccee-eeeehh
Confidence            345444433  3589999999999877533  222  35589999873    1 222 13455666665 455554

>d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Probable cyclic nucleotide-gated ion channel 6
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=80.84  E-value=0.73  Score=25.72  Aligned_cols=41  Identities=10%  Similarity=0.340  Sum_probs=27.8

Q ss_pred             CCceEEEec--CceEEEEEEecEEEEEeCCCc-----eEEEECCCcEE
Q 037642            4 SPGKFQLKF--DAEETCYLLKGKVKVYPKGSS-----DWVEFGAGDLV   44 (74)
Q Consensus         4 ~pg~~~~~~--~~~E~~~vleG~~~~~~~~g~-----e~~~~~~GD~v   44 (74)
                      .||.+-+..  ..+.+++|++|.+.+...++.     ....++|||.|
T Consensus        35 ~~ge~I~~~Gd~~~~ly~i~~G~v~~~~~~~~~~~~~~~~~l~~G~~f   82 (137)
T d1wgpa_          35 TEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFYNRSLLKEGDFC   82 (137)
T ss_dssp             CTTEEEECTTSBCSEEEEEEECCCEEECCSSCSSSSSCEEECCTTCBS
T ss_pred             CCCCEEEecccccceeehhccCceEEEEecCCCceeeeeeeccCCcEE
Confidence            456554443  358999999999998764321     12467899986