Citrus Sinensis ID: 037655

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120-----

MDQQHVSLLERYRRDRRQLIEFLLSSGLIKELRTPSGPTTSLPNADFDSLSADYIIHCVKSGGVVDVSEASKKYLDESTYPTMVHSQIGDSYFLSSDPDLSGSPPRRVPPPIYVKQTANHAPCSSSFRDPANAENLATSRNDYGLKYKASPTSPMRPAEDSGIPPLGLPSLKTGLSDDDLRETAYELFLASLLFSGIGDYSAEDKKREKSPKFLTGLKSKKEKIHLQTHSSGSHSKLIDIVRALDACIRRNLIQLAATKTRGQVDLPQISLGLLIGIFKSDFLNEKAYIQWKNRQANILEELLSCSTNFTTTEHLNVRSCLEKIRDTTEWDFKMSASGRVEVLSSIRQVALKLSSLPGQFGIQSETYYWTAAYHLNIRLYEKLLFGMFDVLDECQLIEEADAIMSLIKLTWPTLGITQKMHYGIFAWVLFQQFVGTGEGMLLEYAVLELQKVSPTEEDDGKEVQYINNIICSRKLNDRKDNLSLLQAIFVSISIWCDSKLQDYHRHFSQEPSNFKRVMALASTVGVFTPGDCAEIKLTKLHTSNDNAARKVKGYVEKSIETACRQVASTIDLESKVQRSHPLALLANELRSIAERELTVFWPAICHWCSEALTISAIMLHHFYREILKPFLQGVTSLSEDARLVLSAANKMFLFGQIGEVCRPIILDWLIAQHAHILEWTGRAFDLEDWEPLSFQQRQGASIIEVFRIIEETVDQFFGMNLPLDIIHLQALLSIIFHSLDAYLQRLLNQLVEQKHLYPSAPPLTRYEETVLPMLKKKLLEFTVLDKSVSEKLNELTIPKLCIRLNTLQYIQKQVSVLEEGIRKSWALVGPAVDQASAEGETEESLERNFLTSSEAVDELFITTLNIIRDTATGAIRKICDFIGARVVFWDLRDSFLCCLYRGSVESARLESFLTHIDTVLDHICSLIDDSLRDFVVLSICRASLEGYVWVLLDGGPSRAFSNSDITMMEDDLNTLKEFFIAGGEGLPRSLVEREAKYAEEILGLFTLQSETLIRMLMSASENISLDLDPQNHGPMHVEDANTLVRVLCHKKDRESSKFLKQQYHLPISSEYDDTPSSNSTLRSPLAFDLLKRSNSIHWTKSGQSGLKIMKKRLQRVTSELKSAAW

cccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHccccccHHHHHHHHHccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHcHHHHccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHcccccccccccccEEccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHccccHHcccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccccccccccccccccccccccEEEEccccccHHHHHHHHHHcccccccccccccccccccccHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHccc

ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHEcccccccccccccccccHEcHHHHHHHHHccccEEHHHHHHHHHccccccEEEccccccEEEEEEcccccccccccccccccccccccccccccccccHcHccccccccccccccccccccccccccccHcccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHcEEEcHHHHHHHHHHHHHHHHHHHcccccHEEHHHHHHHHccHcccccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHcccccccccccEEccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccEEEEEEEcccccccccccccccccccccEEEEEHHHHHHHHHHHHHHHHHHHHHccccccccccHHcHHHHHccccccHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHcccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccccccccccccccEEEEEEccccHHHHHHHHHHccccccccccccccccccccccHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHcc

MDQQHVSLLERYRRDRRQLIEFLLSSGlikelrtpsgpttslpnadfdslsaDYIIHCVksggvvdvseaskkyldestyptmvhsqigdsyflssdpdlsgspprrvpppiyvkqtanhapcsssfrdpanaenlatsrndyglkykasptspmrpaedsgipplglpslktglsddDLRETAYELFLASLLFSGigdysaedkkrekspkfltglkskkekihlqthssgshsKLIDIVRALDACIRRNLIQLAAtktrgqvdlpqiSLGLLIGIFKSDFLNEKAYIQWKNRQANILEELLScstnftttehlnVRSCLEKIRDTtewdfkmsasGRVEVLSSIRQVALKLsslpgqfgiqseTYYWTAAYHLNIRLYEKLLFGMFDVLDECQLIEEADAIMSLIKLtwptlgitqKMHYGIFAWVLFQQFVGTGEGMLLEYAVLELqkvspteeddgkevqYINNIICSRKLNDRKDNLSLLQAIFVSISIWcdsklqdyhrhfsqepsnFKRVMALAStvgvftpgdcaeikltklhtsndnAARKVKGYVEKSIETACRQVASTIdleskvqrshpLALLANELRSIAERELTVFWPAICHWCSEALTISAIMLHHFYREILKPFLQGVTSLSEDARLVLSAANKMFLFGQIGEVCRPIILDWLIAQHAHILEwtgrafdledweplsfqqrqgASIIEVFRIIEETVDqffgmnlplDIIHLQALLSIIFHSLDAYLQRLLNQLVEqkhlypsappltryeETVLPMLKKKLLEFTVLDksvseklneltipklCIRLNTLQYIQKQVSVLEEGIRKSwalvgpavdqasaegeteeslernfltsseAVDELFITTLNIIRDTATGAIRKICDFIGARVVFWDLRDSFLCCLYRGSVESARLESFLTHIDTVLDHICSLIDDSLRDFVVLSICRASLEGYVWVLLdggpsrafsnsdiTMMEDDLNTLKEFFIaggeglprsLVEREAKYAEEILGLFTLQSETLIRMLMSASenisldldpqnhgpmhvedANTLVRVLCHKKdresskflkqqyhlpisseyddtpssnstlrspLAFDLLKrsnsihwtksgQSGLKIMKKRLQRVTSELKSAAW

MDQQHVSLLERYRRDRRQLIEFLLssglikelrtpsgpttslpNADFDSLSADYIIHCVKSGGVVDVSEASKKYLDESTYPTMVHSQIGDSYFLSSDPDLSGSPPRRVPPPIYVKQTANHAPCSSSFRDPANAENLATSRNDYGLKYKASPTSPMRPAEDSGIPPLGLPSLKTGLSDDDLRETAYELFLASLLFSGIGdysaedkkrekspkfltglkskkekihlqthssgshsklIDIVRALDACIRRNLIQlaatktrgqvdlPQISLGLLIGIFKSDFLNEKAYIQWKNRQANILEELLSCSTnftttehlnvrsCLEKIRDTTEWDFKMSASGRVEVLSSIRQVALKLsslpgqfgIQSETYYWTAAYHLNIRLYEKLLFGMFDVLDECQLIEEADAIMSLIKLTWPTLGITQKMHYGIFAWVLFQQFVGTGEGMLLEYAVLELQKVSpteeddgkevqYINNIICSRKLNDRKDNLSLLQAIFVSISIWCDSKLQDYHRHFSQEPSNFKRVMALASTVGVFTPGDCAEIKLtklhtsndnaarKVKGYVEKSIETACRQVASTidleskvqrshPLALLANELRSIAERELTVFWPAICHWCSEALTISAIMLHHFYREILKPFLQGVTSLSEDARLVLSAANKMFLFGQIGEVCRPIILDWLIAQHAHILEWTGRAFDLEDWEPLSFQQRQGASIIEVFRIIEETVDQFFGMNLPLDIIHLQALLSIIFHSLDAYLQRLLNQLVEQKHLYPSAPPLTRYEETVLPMLKKKLLEFTVLDksvseklneltipklcirlNTLQYIQKQVSVLEEGIRKSWALVGPAVDQASAEGETEESLERNFLTSSEAVDELFITTLNIIRDTATGAIRKICDFIGARVVFWDLRDSFLCCLYRGSVESARLESFLTHIDTVLDHICSLIDDSLRDFVVLSICRASLEGYVWVLLDGGPSRAFSNSDITMMEDDLNTLKEFFIAGGEGLPRSLVEREAKYAEEILGLFTLQSETLIRMLMSASENISLDLDPQNHGPMHVEDANTLVRVLCHKKDRESSKFLKQQYHLpisseyddtpssnSTLRSPLAFDLLKrsnsihwtksgqsglkimKKRLQRVTSELKSAAW

MDQQHVSLLERYRRDRRQLIEFLLSSGLIKELRTPSGPTTSLPNADFDSLSADYIIHCVKSGGVVDVSEASKKYLDESTYPTMVHSQIGDSYFlssdpdlsgsppRRVPPPIYVKQTANHAPCSSSFRDPANAENLATSRNDYGLKYKASPTSPMRPAEDSGIPPLGLPSLKTGLSDDDLRETAYELFLASLLFSGIGDYSAEDKKREKSPKFLTGLKSKKEKIHLQTHSSGSHSKLIDIVRALDACIRRNLIQLAATKTRGQVDLPQISLGLLIGIFKSDFLNEKAYIQWKNRQANILEELLSCSTNFTTTEHLNVRSCLEKIRDTTEWDFKMSASGRVEVLSSIRQVALKLSSLPGQFGIQSETYYWTAAYHLNIRLYEKLLFGMFDVLDECQLIEEADAIMSLIKLTWPTLGITQKMHYGIFAWVLFQQFVGTGEGMLLEYAVLELQKVSPTEEDDGKEVQYINNIICSRKLNDRKDNLSLLQAIFVSISIWCDSKLQDYHRHFSQEPSNFKRVMALASTVGVFTPGDCAEIKLTKLHTSNDNAARKVKGYVEKSIETACRQVASTIDLESKVQRSHPLALLANELRSIAERELTVFWPAICHWCSEALTISAIMLHHFYREILKPFLQGVTSLSEDARLVLSAANKMFLFGQIGEVCRPIILDWLIAQHAHILEWTGRAFDLEDWEPLSFQQRQGASIIEVFRIIEETVDQFFGMNLPLDIIHLQALLSIIFHSLDAYLQRLLNQLVEQKHLYPSAPPLTRYEETVLPMLKKKLLEFTVLDKSVSEKLNELTIPKLCIRLNTLQYIQKQVSVLEEGIRKSWALVGPAVDQASAEGETEESLERNFLTSSEAVDELFITTLNIIRDTATGAIRKICDFIGARVVFWDLRDSFLCCLYRGSVESARLESFLTHIDTVLDHICSLIDDSLRDFVVLSICRASLEGYVWVLLDGGPSRAFSNSDITMMEDDLNTLKEFFIAGGEGLPRSLVEREAKYAEEILGLFTLQSETLIRMLMSASENISLDLDPQNHGPMHVEDANTLVRVLCHKKDRESSKFLKQQYHLPISSEYDDTPSSNSTLRSPLAFDLLKRSNSIHWTKSGQSGLKIMKKRLQRVTSELKSAAW

***********Y*RDRRQLIEFLLSSGLIKE**************DFDSLSADYIIHCVKSGGVVDVSEASKKYLDESTYPTMVHSQIGDSY***************************************************************************************LRETAYELFLASLLFSGIGDY***********************************KLIDIVRALDACIRRNLIQLAATKTRGQVDLPQISLGLLIGIFKSDFLNEKAYIQWKNRQANILEELLSCSTNFTTTEHLNVRSCLEKIRDTTEWDFKMSASGRVEVLSSIRQVALKLSSLPGQFGIQSETYYWTAAYHLNIRLYEKLLFGMFDVLDECQLIEEADAIMSLIKLTWPTLGITQKMHYGIFAWVLFQQFVGTGEGMLLEYAVLELQKV********KEVQYINNIICSRKLNDRKDNLSLLQAIFVSISIWCDSKLQDYHRHFSQEPSNFKRVMALASTVGVFTPGDCAEIKLTKLHTSNDNAARKVKGYVEKSIETACRQVASTIDLESKVQRSHPLALLANELRSIAERELTVFWPAICHWCSEALTISAIMLHHFYREILKPFLQGVTSLSEDARLVLSAANKMFLFGQIGEVCRPIILDWLIAQHAHILEWTGRAFDLEDWEPLSFQQRQGASIIEVFRIIEETVDQFFGMNLPLDIIHLQALLSIIFHSLDAYLQRLLNQLVEQKHLYPSAPPLTRYEETVLPMLKKKLLEFTVLDKSVSEKLNELTIPKLCIRLNTLQYIQKQVSVLEEGIRKSWALVGPAV*****************LTSSEAVDELFITTLNIIRDTATGAIRKICDFIGARVVFWDLRDSFLCCLYRGSVESARLESFLTHIDTVLDHICSLIDDSLRDFVVLSICRASLEGYVWVLLDGGPSRAFSNSDITMMEDDLNTLKEFFIAGGEGLPRSLVEREAKYAEEILGLFTLQSETLIRMLMSA*******************DANTLVRVLCH****************************************************************************

******S**ERYRRDRRQLIEFLLSSGLIKELRTPSGPTTSLPNADFDSLSADYIIHCVKSGGVVDVSEASKKYLDESTYPTMVHSQIGDSYFLS***********************************************************************GLPSLKTGLSDDDLRETAYELFLAS****************************************************LDACIRRNLIQLAATKTRGQVDLPQISLGLLIGIFKSDFLNEKAYIQWKNRQANILEELLSCSTNFT***********************************IRQVA***********I*SETYYWTAAYHLNIRLYEKLLFGMFDVLDECQLIEEADAIMSLIKLTWPTLGITQKMHYGIFAWVLFQQFVGTGEGMLLEYAVLELQKVSPTEED*GK**QYINNIICSRKLNDRKDNLSLLQAIFVSISIWCDSKLQDYHRHFSQEPSNFKRVMALASTVGVFTPGDCA***************RKVKGYVEKSIETACR****************PLALLANELRSIAERELTVFWPAICHWCSEALTISAIMLHHFYREILKPFLQGVTSLSEDARLVLSAANKMFLFGQIGEVCRPIILDWLIAQHAHILEWTGRAFDLEDWE******RQGASIIEVFRIIEETVDQFFGMNLPLDIIHLQALLSIIFHSLDAYLQRLLNQLVEQKHLYP*************************************TIPKLCIRLNTLQYIQKQVSVLEEGIRK*************************************ITTLNIIRDTATGAIRKICDFIGARVVFWDLRDSFLCCLYRGSVESARLESFLTHIDTVLDHICSLIDDSLRDFVVLSICRASLEGYVWVLLDGGPSRAFSNSDITMMEDDLNTLKEFFIAGGEGLPRSLVEREAKYAEEILGLFTLQSETLIRM*************************NTLVRVLCHKKDRESSKFLKQQYHLPISSE******SNSTLRSPLAFDLLKRSNSIH**********************L**A**

MDQQHVSLLERYRRDRRQLIEFLLSSGLIKELRTPSGPTTSLPNADFDSLSADYIIHCVKSGGVVDVSEASKKYLDESTYPTMVHSQIGDSYFLSSDPDLSGSPPRRVPPPIYVKQTANHAPCSSSFRDPANAENLATSRNDYGLKYKAS**********SGIPPLGLPSLKTGLSDDDLRETAYELFLASLLFSGIGDYSAEDKKREKSPKFLTGLKSKKE***********HSKLIDIVRALDACIRRNLIQLAATKTRGQVDLPQISLGLLIGIFKSDFLNEKAYIQWKNRQANILEELLSCSTNFTTTEHLNVRSCLEKIRDTTEWDFKMSASGRVEVLSSIRQVALKLSSLPGQFGIQSETYYWTAAYHLNIRLYEKLLFGMFDVLDECQLIEEADAIMSLIKLTWPTLGITQKMHYGIFAWVLFQQFVGTGEGMLLEYAVLELQKVSPTEEDDGKEVQYINNIICSRKLNDRKDNLSLLQAIFVSISIWCDSKLQDYHRHFSQEPSNFKRVMALASTVGVFTPGDCAEIKLTKLHTSNDNAARKVKGYVEKSIETACRQVASTIDLESKVQRSHPLALLANELRSIAERELTVFWPAICHWCSEALTISAIMLHHFYREILKPFLQGVTSLSEDARLVLSAANKMFLFGQIGEVCRPIILDWLIAQHAHILEWTGRAFDLEDWEPLSFQQRQGASIIEVFRIIEETVDQFFGMNLPLDIIHLQALLSIIFHSLDAYLQRLLNQLVEQKHLYPSAPPLTRYEETVLPMLKKKLLEFTVLDKSVSEKLNELTIPKLCIRLNTLQYIQKQVSVLEEGIRKSWALVGP****************RNFLTSSEAVDELFITTLNIIRDTATGAIRKICDFIGARVVFWDLRDSFLCCLYRGSVESARLESFLTHIDTVLDHICSLIDDSLRDFVVLSICRASLEGYVWVLLDGGPSRAFSNSDITMMEDDLNTLKEFFIAGGEGLPRSLVEREAKYAEEILGLFTLQSETLIRMLMSASENISLDLDPQNHGPMHVEDANTLVRVLCHKKDRESSKFLKQQYHLPISS***********LRSPLAFDLLKRSNSIHWTKSGQSGLKIMKKRLQ***********

**QQHVSLLERYRRDRRQLIEFLLSSGLIKELRTPSGPTTSLPNADFDSLSADYIIHCVKSGGVVDVSEASKKYLDESTYPTMVHSQIGDSYFLSSDPDLSGSPPRRVPP*********************************************RPAEDSGIPPLGLPSLKTGLSDDDLRETAYELFLASLLF****************************************SKLIDIVRALDACIRRNLIQLAATKTRGQVDLPQISLGLLIGIFKSDFLNEKAYIQWKNRQANILEELLSCSTNFTTTEHLNVRSCLEKIRDTTEWDFKM*ASGRVEVLSSIRQVALKLSSLPGQFGIQSETYYWTAAYHLNIRLYEKLLFGMFDVLDECQLIEEADAIMSLIKLTWPTLGITQKMHYGIFAWVLFQQFVGTGEGMLLEYAVLELQKVSPTEEDDGKEVQYINNIICSRKLNDRKDNLSLLQAIFVSISIWCDSKLQDYHRHFSQEPSNFKRVMALASTVGVFTPGDCAEIKLTK***SNDNAARKVKGYVEKSIETACRQVASTIDLESKVQRSHPLALLANELRSIAERELTVFWPAICHWCSEALTISAIMLHHFYREILKPFLQGVTSLSEDARLVLSAANKMFLFGQIGEVCRPIILDWLIAQHAHILEWTGRAFDLEDWEPLSFQQRQGASIIEVFRIIEETVDQFFGMNLPLDIIHLQALLSIIFHSLDAYLQRLLNQLVEQKHLYPSAPPLTRYEETVLPMLKKKLL***************LTIPKLCIRLNTLQYIQKQVSVLEEGIRKSWALVG****************ERNFLTSSEAVDELFITTLNIIRDTATGAIRKICDFIGARVVFWDLRDSFLCCLYRGSVESARLESFLTHIDTVLDHICSLIDDSLRDFVVLSICRASLEGYVWVLLDGGPSRAFSNSDITMMEDDLNTLKEFFIAGGEGLPRSLVEREAKYAEEILGLFTLQSETLIRMLMSASENI***********MHVEDANTLVRVLCHKKDRESSKFLKQQYHLPISSEYDDTPSSNSTLRSPLAFDLLKRSNSIHW****QSGLKIMKKRLQRVTSELKSAAW

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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iiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1125
297742578		1152	unnamed protein product [Vitis vinifera]	0.984	0.960	0.611	0.0
359474026		1141	PREDICTED: uncharacterized protein LOC10	0.984	0.970	0.615	0.0
255537349		1146	conserved hypothetical protein [Ricinus	0.988	0.970	0.610	0.0
240255786		1117	uncharacterized protein [Arabidopsis tha	0.96	0.966	0.524	0.0
224058577		1373	predicted protein [Populus trichocarpa]	0.703	0.576	0.592	0.0
449460507		1096	PREDICTED: uncharacterized protein LOC10	0.935	0.959	0.500	0.0
147852114		725	hypothetical protein VITISV_009285 [Viti	0.577	0.896	0.592	0.0
242076840		1054	hypothetical protein SORBIDRAFT_06g02572	0.686	0.732	0.443	0.0
302772633		1091	hypothetical protein SELMODRAFT_92955 [S	0.928	0.957	0.350	0.0
302799164		1094	hypothetical protein SELMODRAFT_114286 [	0.931	0.957	0.349	0.0

>gi\|297742578\|emb\|CBI34727.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1431 bits (3703), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 707/1157 (61%), Positives = 894/1157 (77%), Gaps = 50/1157 (4%)

Query: 7    SLLERYRRDRRQLIEFLLSSGLIKELRTPSGPTTSLPNADFDSLSADYIIHCVKSGGVVD 66
            SLL+RYRRDRR+L++F+LSS  I ++ T S PT ++ ++D D +SADY++ C+KSGGVVD
Sbjct: 3    SLLQRYRRDRRKLLDFILSSASIHQIPTSSAPTANVSDSDLDVVSADYVLDCLKSGGVVD 62

Query: 67   VSEASKKYLDESTYPTMVHSQIGDSYFLSSDPDLSGSPPRRVPPPIYVKQTANHAPCSSS 126
            +SEA+K+Y +ES  P M+HSQ+GDSYFLSSDPDL+ SPPRR+PP I+V Q++NH+     
Sbjct: 63   ISEATKRYYEESARPVMIHSQLGDSYFLSSDPDLAESPPRRLPPRIHVNQSSNHSS---- 118

Query: 127  FRDPANAENLATSRNDYGLKYKASPTSPMRPAEDSGIPPLGLPSLKTGLSDDDLRETAYE 186
                +++EN+A S + + LKY  + ++P++P E+  I  LGLP L TGLSDDDLRE+AYE
Sbjct: 119  ----SSSENIAMSGDGHDLKYTTTTSTPLKPVENLNIFSLGLPILNTGLSDDDLRESAYE 174

Query: 187  LFLASLLFSGIGDYSAEDKKREKSPKFLTGLKSKKEKIHLQTHSSGSHSKLIDIVRALDA 246
            + LAS++FSG+  Y+ +D+K+EKS KFL+G K K +K HLQ+ S G HS+LID +R +D 
Sbjct: 175  IMLASIVFSGVQVYTVQDRKKEKSSKFLSGFKGKMDKAHLQSQSLGRHSELIDTIRVMDL 234

Query: 247  CIRRNLIQLAATKTRGQVDLPQISLGLLIGIFKSDFLNEKAYIQWKNRQANILEELLSCS 306
            C+R+ L+Q A  K   ++D+PQISLGLL  IFKSDF++EK+Y+QWK RQANILEE+L   
Sbjct: 235  CMRQKLMQFATRKLCDRIDIPQISLGLLNSIFKSDFVHEKSYMQWKYRQANILEEVLYFF 294

Query: 307  TNFTTTEHLNVRSCLEKIRDTTEWDFKMSASGRVEVLSSIRQVALKLSSLPGQFGIQSET 366
             N  T E L ++S L KIR+T EWDF M  S R EVL ++++VA KL+S+PGQFGI  ET
Sbjct: 295  VNLKTAERLTIKSSLAKIRNTKEWDFIMPPSERAEVLLAMKEVASKLASVPGQFGIHDET 354

Query: 367  YYWTAAYHLNIRLYEKLLFGMFDVLDECQLIEEADAIMSLIKLTWPTLGITQKMHYGIFA 426
             YWTA YHLNIR+YEKLLFGMFDVLDE QLIEEAD I+ LIKLTW +LGI Q+MH  ++ 
Sbjct: 355  CYWTAGYHLNIRIYEKLLFGMFDVLDEGQLIEEADEILMLIKLTWSSLGINQRMHNVLYG 414

Query: 427  WVLFQQFVGTGEGMLLEYAVLELQKVSPTEEDDGKEVQYINNIICSRKLNDRKDNLSLLQ 486
            WVLFQQFVGT E  LLEYA+LE+Q+V  TE+ DGKE QY+N+++CSR  N ++  LSL++
Sbjct: 415  WVLFQQFVGTDEATLLEYAILEVQQVLSTEDIDGKEEQYMNSLVCSRVFNGKEKKLSLVE 474

Query: 487  AIFVSISIWCDSKLQDYHRHFSQEPSNFKRVMALASTVGVFTPGDCAEIK--------LT 538
            AIF S+SIWCDSKL DYH HFS++  NFK VM LA  VG  T  +  EIK        LT
Sbjct: 475  AIFFSMSIWCDSKLLDYHLHFSKKLDNFKTVMTLALAVGFITSSEGGEIKVKKFSYLQLT 534

Query: 539  KLHTSNDNAARKVKGYVEKSIETACRQVASTIDLESKVQRSHPLALLANELRSIAERELT 598
            K +  ++ AA+K++ Y++KSIE A  +VA+T+DLESK++R+HPLALLANELR IA RELT
Sbjct: 535  KTNGLDEIAAKKLQTYIQKSIEAAYSRVAATMDLESKLERTHPLALLANELRLIANRELT 594

Query: 599  VFWPAICHWCSEALTISAIMLHHFYREILKPFLQGVTSLSEDARLVLSAAN--------- 649
            VF P + HWC EA  ISA++L+  Y E LKPFL+GVTSLSED +LVL AA+         
Sbjct: 595  VFCPILRHWCPEAGMISAMLLNQLYGERLKPFLKGVTSLSEDVKLVLPAADIFPVLGISV 654

Query: 650  -------------------------KMFLFGQIGEVCRPIILDWLIAQHAHILEWTGRAF 684
                                      +FL  QIGE+ RPIILDW+IAQH  ILEWTGRAF
Sbjct: 655  KYGLDNMKIRLELYSKSTSKKMKLFVLFLCVQIGEISRPIILDWVIAQHGRILEWTGRAF 714

Query: 685  DLEDWEPLSFQQRQGASIIEVFRIIEETVDQFFGMNLPLDIIHLQALLSIIFHSLDAYLQ 744
            DLEDWEPLS QQRQ  S++EVFRI+EETVDQFFG+NLP+DI HLQALLS+IFHSLD YLQ
Sbjct: 715  DLEDWEPLSSQQRQAVSVVEVFRIVEETVDQFFGLNLPMDITHLQALLSVIFHSLDTYLQ 774

Query: 745  RLLNQLVEQKHLYPSAPPLTRYEETVLPMLKKKLLEFTVLDKSVSEKLNELTIPKLCIRL 804
            +++++LVE+ +L+PS P LTRY+E V+P+ KKKL+E T LD+ V+ KLNELTI KLC+RL
Sbjct: 775  KVISELVEKSYLFPSTPSLTRYKEMVIPIAKKKLVESTPLDEKVNNKLNELTISKLCVRL 834

Query: 805  NTLQYIQKQVSVLEEGIRKSWALVGPAVDQASAEGETEESLERNFLTSSEAVDELFITTL 864
            NTLQYIQKQ+  LE+GIRKSWALV P+ +Q   + E+ E+LE + + SSE++DELF TT 
Sbjct: 835  NTLQYIQKQMRTLEDGIRKSWALVRPSANQRWTKEESLENLEESSMMSSESIDELFSTTF 894

Query: 865  NIIRDTATGAIRKICDFIGARVVFWDLRDSFLCCLYRGSVESARLESFLTHIDTVLDHIC 924
            NIIRDTAT AI KICDFIG +VVFWDLRDSFL  LYRG+VE ARL+S L H+DTVLD IC
Sbjct: 895  NIIRDTATDAINKICDFIGTKVVFWDLRDSFLFRLYRGNVEDARLDSILPHVDTVLDQIC 954

Query: 925  SLIDDSLRDFVVLSICRASLEGYVWVLLDGGPSRAFSNSDITMMEDDLNTLKEFFIAGGE 984
             LIDD+LRD VVLSIC+A+LE +VWVLLDGGPSRAFS+SDI MMEDDLN LK+ F+A GE
Sbjct: 955  DLIDDALRDLVVLSICKAALEAFVWVLLDGGPSRAFSDSDIPMMEDDLNMLKDLFVADGE 1014

Query: 985  GLPRSLVEREAKYAEEILGLFTLQSETLIRMLMSASENISLDLDPQNHGPMHVEDANTLV 1044
            GLPRSLV+++A++AE+IL LF LQ+ T+I+MLM+ASE+IS  LD + HG + + DA TLV
Sbjct: 1015 GLPRSLVQKKAEFAEQILSLFALQTGTVIQMLMTASEHISTGLDSRKHGRLCLGDAQTLV 1074

Query: 1045 RVLCHKKDRESSKFLKQQYHLPISSEYDDTPSSNSTLRSPLAFDLLKRSNSIHWTKSGQS 1104
            RVLCHKKDRE+SKFLK+QY LP+SSEYDDTPS +STLRSPL  DL+KRS S HWT+ GQS
Sbjct: 1075 RVLCHKKDREASKFLKRQYQLPMSSEYDDTPSKDSTLRSPLISDLIKRSASFHWTEKGQS 1134

Query: 1105 GLKIMKKRLQRVTSELK 1121
                +KK+LQ  TSE++
Sbjct: 1135 SFISLKKKLQEATSEIR 1151

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359474026\|ref\|XP_002276624.2\| PREDICTED: uncharacterized protein LOC100259829 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255537349\|ref\|XP_002509741.1\| conserved hypothetical protein [Ricinus communis] gi\|223549640\|gb\|EEF51128.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|240255786\|ref\|NP_192904.5\| uncharacterized protein [Arabidopsis thaliana] gi\|332657637\|gb\|AEE83037.1\| uncharacterized protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|224058577\|ref\|XP_002299551.1\| predicted protein [Populus trichocarpa] gi\|222846809\|gb\|EEE84356.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|449460507\|ref\|XP_004147987.1\| PREDICTED: uncharacterized protein LOC101213131 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|147852114\|emb\|CAN82267.1\| hypothetical protein VITISV_009285 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|242076840\|ref\|XP_002448356.1\| hypothetical protein SORBIDRAFT_06g025720 [Sorghum bicolor] gi\|241939539\|gb\|EES12684.1\| hypothetical protein SORBIDRAFT_06g025720 [Sorghum bicolor]	Back alignment and taxonomy information

>gi\|302772633\|ref\|XP_002969734.1\| hypothetical protein SELMODRAFT_92955 [Selaginella moellendorffii] gi\|300162245\|gb\|EFJ28858.1\| hypothetical protein SELMODRAFT_92955 [Selaginella moellendorffii]	Back alignment and taxonomy information

>gi\|302799164\|ref\|XP_002981341.1\| hypothetical protein SELMODRAFT_114286 [Selaginella moellendorffii] gi\|300150881\|gb\|EFJ17529.1\| hypothetical protein SELMODRAFT_114286 [Selaginella moellendorffii]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1125
TAIR\|locus:2139707		1117	AT4G11670 "AT4G11670" [Arabido	0.560	0.564	0.512	5.8e-275
TAIR\|locus:2169424		1101	AT5G06970 "AT5G06970" [Arabido	0.786	0.803	0.353	6.9e-158
TAIR\|locus:2043515		987	AT2G25800 "AT2G25800" [Arabido	0.696	0.794	0.270	2.4e-64
TAIR\|locus:2061619		952	AT2G20010 "AT2G20010" [Arabido	0.797	0.942	0.273	1.4e-62
TAIR\|locus:2050997		1039	AT2G33420 "AT2G33420" [Arabido	0.342	0.370	0.278	4.1e-53
TAIR\|locus:2018339		1035	AT1G04470 "AT1G04470" [Arabido	0.344	0.374	0.245	2.9e-48

TAIR\|locus:2139707 AT4G11670 "AT4G11670" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1625 (577.1 bits), Expect = 5.8e-275, Sum P(2) = 5.8e-275
 Identities = 332/648 (51%), Positives = 443/648 (68%)

Query:     7 SLLERYRRDRRQLIEFLLSSGLIKELRTPSGPTTSLPNADFDSLSADYIIHCVKSGGVVD 66
             SLL+RYR DRR+L+EFL+SSGL+KELR+PSG  TSL  AD D+LSADY++ CVKSGGVVD
Sbjct:     3 SLLQRYRNDRRKLMEFLMSSGLVKELRSPSGSPTSLSPADLDALSADYVLDCVKSGGVVD 62

Query:    67 VSEASKKYLDESTYPTMVHSQIGDSYFXXXXXXXXXXXXRRVPPP-IYVKQTANHAPCSS 125
             VS+  +KY  +S+YP  +HS+ GDSYF             R+PPP + +++++N+    S
Sbjct:    63 VSKGREKYNFDSSYPVTIHSESGDSYFLVSSPDLAGSPPHRMPPPPVNIEKSSNNGADMS 122

Query:   126 SFRDPANAENLATSRNDYGLKYKASPTSPMRPAEDSGIPPLGLPSLKTGLSDDDLRETAY 185
                D +N  +   +R++Y  K +     P++P +   I PLGLP L+TGLSDDDLRE AY
Sbjct:   123 RHMDSSNTPS---ARDNYVFKEETPDIKPVKPIK---IIPLGLPPLRTGLSDDDLREAAY 176

Query:   186 ELFLASLLFSG-----IGDYSAEDKKREKSPKFLTGLKSKKEKIHLQTHSSGSHSKLIDI 240
             EL +AS+L S      +  Y    +K EKS + +  LK +K+K HLQ   S +HS   +I
Sbjct:   177 ELMIASMLLSSFLTNSVEAYPTHRRKIEKSSRLMLSLK-RKDKPHLQPQISNTHS---EI 232

Query:   241 VRALDACIRRNLIQLAATKTRGQVDLPQISLGLLIGIFKSDFLNEKAYIQWKNRQANILE 300
                +D CIRRNL+QLA  +T  Q+DLPQ++LGLL+GIFKSDF NEK Y++WK RQAN+LE
Sbjct:   233 SSKMDTCIRRNLVQLATLRTGEQIDLPQLALGLLVGIFKSDFPNEKLYMKWKTRQANLLE 292

Query:   301 ELLSCSTNFTTTEHLNVRSCLEKIRDTTEWDFKMSASGRVEVLSSIRQVALKLSSLPGQF 360
             E+L  S +    E   +R CL  IRD+ EWD  +SAS R+EVLSSIRQVA KLSSLPG+ 
Sbjct:   293 EVLCFSPSLEKNERATMRKCLATIRDSKEWDVVVSASLRIEVLSSIRQVASKLSSLPGRC 352

Query:   361 GIQSETYYWTAAYHLNIRLYEKLLFGMFDVLDECQLIEEADAIMSLIKLTWPTLGITQKM 420
             GI+ ETYYWTA YHLNIRLYEKLLFG+FD LDE Q+IE+A +++  +K  W TLGIT+ +
Sbjct:   353 GIEEETYYWTAIYHLNIRLYEKLLFGVFDTLDEGQVIEDASSMLFHMKSIWSTLGITENL 412

Query:   421 HYGIFAWVLFQQFVGTGEGMLLEYAVLELQKVSPTEEDDGKEVQYINNIICSRKLNDRKD 480
             H  I+ WVLFQQFV TGE  LL   + ELQKV+  E  + KE  Y+++++CSR+      
Sbjct:   413 HSAIYGWVLFQQFVCTGEPSLLGSTIQELQKVTSAESGNPKEDLYLSHLVCSRQTIGTDI 472

Query:   481 NLSLLQAIFVSISIWCDSKLQDYHRHFSQEPSNFKRVMALASTVGVFTPGDCAEIKLTKL 540
             +L L++AI  S+S WCD KLQDYH HF ++P +F  ++ LASTVG+  P DC   +L KL
Sbjct:   473 HLGLVKAILTSVSAWCDDKLQDYHLHFGKKPRDFGMLVRLASTVGL-PPADCTRTELIKL 531

Query:   541 HTSNDNAARKVKGYVEKSIETACRQVASTIDLESKVQRSHPLALLANELRSIAERELTVF 600
              T +D+ + K++ YV+ SI+ AC + A    ++S  +R+H LALLANEL  IA+ E+  F
Sbjct:   532 DTLSDDVSDKIQSYVQNSIKGACARAAHFAYVKSHGERTHALALLANELTVIAKVEINEF 591

Query:   601 WPAICHWCSEALTISAIMLHHFYREILKPFLQGVTSLSEDARLVLSAA 648
              P    W  E + ISA++LH FY E L PFL+GV+SLS D R V+ AA
Sbjct:   592 VPVFSKWLPECMMISAMLLHRFYGERLTPFLEGVSSLSGDVRKVVPAA 639

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006486 "protein glycosylation" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

TAIR\|locus:2169424 AT5G06970 "AT5G06970" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2043515 AT2G25800 "AT2G25800" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2061619 AT2G20010 "AT2G20010" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2050997 AT2G33420 "AT2G33420" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2018339 AT1G04470 "AT1G04470" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00001120001	SubName- Full=Chromosome chr2 scaffold_112, whole genome shotgun sequence; (1144 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1125
pfam05664		677	pfam05664, DUF810, Protein of unknown function (DU	1e-163

>gnl\|CDD\|218680 pfam05664, DUF810, Protein of unknown function (DUF810)	Back alignment and domain information

 Score =  499 bits (1286), Expect = e-163
 Identities = 218/683 (31%), Positives = 338/683 (49%), Gaps = 45/683 (6%)

Query: 174 GLSDDDLRETAYELFLASLLFSGIGDYSAEDKKREKSP-KFLTGLKSKK--EKIHLQTHS 230
           GLSDDDLRETAYE+ +A+   SG   Y +++KK EKS  K   GLK  K          S
Sbjct: 1   GLSDDDLRETAYEILVAACRSSGPLIYPSKEKKSEKSRVKKALGLKRSKSGSSSSQPQRS 60

Query: 231 SGSHSKL------IDIVRALDACIRRNLIQLAATKTRGQVDLPQISLGLLIGIFKSDFLN 284
               ++L      + I   +D+ IRR L++ A  +   + +   + L LL  +  S+F +
Sbjct: 61  RRPVTQLEIMRIQMRISEQMDSRIRRGLLRAAVGQVGRREESIVLPLELLQQLKASEFPD 120

Query: 285 EKAYIQWKNRQANILEELL----SCSTNFTTTEHLNVRSCLEKIRDTTEWDFKMSASGRV 340
            K Y  W+ RQ  +LEE L        + +      +R  +  I ++         + R 
Sbjct: 121 PKEYEAWQKRQLKLLEEGLILHPCVPLDKSNRSAQRLREIIRAIDESDSLPRPTDTNKRS 180

Query: 341 EVLSSIRQVALKLSSLPGQFGIQSETYYWTAAYHLNIRLYEKLLFGMFDVLDECQLIEEA 400
           E+L S+R V + L+  P + G+  ++ +W   Y LNIRLYEKLL  +FD +D+  L EE 
Sbjct: 181 EILRSLRSVVMSLAWRPSRGGMTGDSCHWADGYPLNIRLYEKLLEAVFDQVDDGSLAEEV 240

Query: 401 DAIMSLIKLTWPTLGITQKMHYGIFAWVLFQQFVGTGEGMLLEYAVLELQKVSPTEEDDG 460
           D I+ L+K TW  LGIT+ +H    AW LF+Q+V TGE  LL  A+ +L +V+   +   
Sbjct: 241 DEILELLKKTWSILGITETIHNVCLAWALFRQYVVTGEPDLLAAAIAQLAEVALDAKRGT 300

Query: 461 KEVQYINNIICSRKLNDRKDNLSLLQAIFVSISIWCDSKLQDYHRHFSQEPSN-FKRVMA 519
           KE  Y+ ++  S           LL +   SI  W + +L DYH  F +      + +++
Sbjct: 301 KEALYLKSLARSVTTIH----SPLLASALSSILGWSEKRLLDYHDTFDEGNIGVMEDIVS 356

Query: 520 LASTVGVFTPGDCAEIKLTKLHTSNDNAARKVKGYVEKSIETACRQVASTIDLESKVQRS 579
           +A +       D +        T    A  ++  Y+  S++ A  + A   D ++     
Sbjct: 357 IAYSAARILGEDISAELRRARKTC---ARDRIDEYIRSSLKNAFAKDAKVADGDATTNPL 413

Query: 580 HPLALLANELRSIAERELTVFWPAICHWCSEALTISAIMLHHFYREILKPFLQGVTSLSE 639
           H LA LA E   +A++EL  F P +  W  +A  ++A  LH  Y   LK FL G T L+E
Sbjct: 414 HVLAQLAEETADLAKKELERFSPILKRWHPQAAGVAAATLHKCYGNDLKQFLAGGTELTE 473

Query: 640 DARLVLSAANKM--FLFGQIGEVCRP--------------------IILDWLIAQHAHIL 677
           DA  VL AA+K+   L       C                      ++  W+  +   + 
Sbjct: 474 DAVEVLWAADKLEKALVQIAAVDCDDGGKAVIREMEPYEVESVIGNLVKTWINEKIDRLK 533

Query: 678 EWTGRAFDLEDWEPLSFQQRQGASIIEVFRIIEETVDQFFGMNLPLDIIHLQALLSIIFH 737
           EW  RA + E W+P S  QR   S +EV RI+EET+D FFG+ +P  +  L+AL   I  
Sbjct: 534 EWVDRAIEQETWKPKSNDQRYAPSAVEVLRIVEETLDGFFGLPIPAHVSLLRALTEGIDA 593

Query: 738 SLDAYLQRLLNQLVEQKHLYPSAPPLTRYEE--TVLPMLKKKLLEFTVLDKSVSEKLNEL 795
           +   Y  ++++ L  ++ L P  PPLTR ++   ++ + KKK    +  D+  S+ ++EL
Sbjct: 594 AFQKYTSKVVSSLGSREDLVPPLPPLTRCKKASGIVDLWKKKFKPSSPPDERKSQNIDEL 653

Query: 796 TIPKLCIRLNTLQYIQKQVSVLE 818
            +P LC+RLNTL Y++ Q+S LE
Sbjct: 654 GVPALCVRLNTLHYLRSQLSSLE 676

This family consists of several plant proteins of unknown function. Length = 677

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1125
PF05664		677	DUF810: Protein of unknown function (DUF810); Inte	100.0
KOG1011		1283	consensus Neurotransmitter release regulator, UNC-	99.96
KOG1328		1103	consensus Synaptic vesicle protein BAIAP3, involve	99.95
PF10540		137	Membr_traf_MHD: Munc13 (mammalian uncoordinated) h	99.73
PF06046		566	Sec6: Exocyst complex component Sec6; InterPro: IP	98.83
PF04437		494	RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR00	96.75
PF04091		311	Sec15: Exocyst complex subunit Sec15-like ; InterP	96.74
COG5173		742	SEC6 Exocyst complex subunit SEC6 [Intracellular t	96.35
KOG2180		793	consensus Late Golgi protein sorting complex, subu	96.18
KOG3543		1218	consensus Ca2+-dependent activator protein [Signal	95.93
KOG2286		667	consensus Exocyst complex subunit SEC6 [Intracellu	95.9
KOG0412		773	consensus Golgi transport complex COD1 protein [In	85.6

>PF05664 DUF810: Protein of unknown function (DUF810); InterPro: IPR008528 This family consists of several plant proteins of unknown function	Back alignment and domain information

Probab=100.00  E-value=1.9e-175  Score=1562.12  Aligned_cols=637  Identities=36%  Similarity=0.559  Sum_probs=599.6

Q ss_pred             CCChHHHHHHHHHHHHHhhhccCCCCCChhhhhccCChhhhhhcccccccc----ccccCCCCCcchHHHHHHh------
Q 037655          174 GLSDDDLRETAYELFLASLLFSGIGDYSAEDKKREKSPKFLTGLKSKKEKI----HLQTHSSGSHSKLIDIVRA------  243 (1125)
Q Consensus       174 ~ls~ddlRetAYEi~~a~~~~sg~~~~~~~~~~~~~~~s~~k~~lg~~~~~----~~~~~~~~~~~~~~e~mr~------  243 (1125)
                      ||||||||||||||||||||+||++.++..+++.++  ||+|++||+|++.    .++|++++||+|++||||+      
T Consensus         1 ~ls~~dlRetAYEi~~a~~~~s~~~~~~~~~~~~~~--s~~k~~lgl~~~~~~~~~~~~~~~~~~~~~~e~~r~qm~vse   78 (677)
T PF05664_consen    1 GLSDDDLRETAYEILLASCRSSGGLIYFSQSKKKEK--SRVKKALGLKSSKSGSSVSSPGRPRRPMTSAEIMRVQMRVSE   78 (677)
T ss_pred             CCCHHHHHHHHHHHHHHHHhccCCCccCccccccch--hHHHHHhcCCCCCCCCCCCCCCCCCCcchHHHHHHHHhcccH
Confidence            799999999999999999999987666654433333  8999999998764    5669999999999999999      


Q ss_pred             -hhHHHHHHHHHHHHHhhcccccchhcchHhhhccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCccCcchh----hhHH
Q 037655          244 -LDACIRRNLIQLAATKTRGQVDLPQISLGLLIGIFKSDFLNEKAYIQWKNRQANILEELLSCSTNFTTTEH----LNVR  318 (1125)
Q Consensus       244 -~D~r~R~~L~r~~~gq~g~r~~~~~lpLeLL~~~k~sdF~d~~ey~~Wq~Rql~vLE~gLl~hp~~~~~~~----~~lr  318 (1125)
                       ||+||||+|||+++||+|||+|+|+|||||||++|+|||+|++||++|||||||||||||++||++|++++    ++||
T Consensus        79 ~~d~r~r~~l~~~~~~~~g~r~e~~~lpLeLl~~~~~sdF~d~~ey~~WqkRql~~Le~gL~~hp~~~l~~s~~~a~~lr  158 (677)
T PF05664_consen   79 QMDARIRRALLRAAAGQVGRRAESIVLPLELLQQLKPSDFSDEKEYEQWQKRQLKVLEAGLLNHPSVPLDKSNASAQRLR  158 (677)
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccccccHHHHhhCCHhhCCCHHHHHHHHHHHHHHHHHHHHhCcCCCccccchhHHHHH
Confidence             99999999999999999999999999999999999999999999999999999999999999999999998    8999


Q ss_pred             HHHHHhhhccccccccccCchhhHHHHHHHHHHHhhCCCCCCCCCCCccccccCCCCCHHHHHHHHHhhhcccCcccchH
Q 037655          319 SCLEKIRDTTEWDFKMSASGRVEVLSSIRQVALKLSSLPGQFGIQSETYYWTAAYHLNIRLYEKLLFGMFDVLDECQLIE  398 (1125)
Q Consensus       319 ~~l~~i~~~~~~~~~~~~~~~~e~m~~l~~~~~~La~r~~~~~~~~e~chWadgyPlN~rlY~~LL~~~FD~~de~~l~e  398 (1125)
                      +++++|++.+.++..++.++|+|+||+||++|++|||||+.+|.++|+||||||||+|+|+|++||++|||++|||+|+|
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~se~~~~l~~~~~~La~r~~~~~~~~e~chWadgyplN~~LYe~LL~~~FD~~de~~vid  238 (677)
T PF05664_consen  159 QIIAKIREDEAEDKPIDTGKNSESMRALRSAVISLAWRPSRDGSSGETCHWADGYPLNVRLYEKLLFSVFDILDEGQVID  238 (677)
T ss_pred             HHHHhcccccccCCcCccccccHHHHHHHHHHHHHhcCCCCCCCCCcccccccCCCccHHHHHHHHHHHhcccccchHHh
Confidence            99999888886666655557799999999999999999988999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhCCCCCCChhhHHHHHHHHHHHhhcccCchhhHHHHHHHhhccCCCcccCcccccchhhhhhhcccCCc
Q 037655          399 EADAIMSLIKLTWPTLGITQKMHYGIFAWVLFQQFVGTGEGMLLEYAVLELQKVSPTEEDDGKEVQYINNIICSRKLNDR  478 (1125)
Q Consensus       399 E~dElLelik~tW~iLgit~~~Hnvcf~wVlF~qyV~tge~dlL~aA~~~l~ev~~d~~~~~~~~~y~~~l~~~~~~~~t  478 (1125)
                      |+||+||+||+||++|||||++||+||+||+|+|||+|||++||++|+++|++|+.|+++.++++.|++||+|+.    +
T Consensus       239 E~dEvlellK~tW~~LGIt~~lHn~cf~WVlF~qyv~tge~~LL~~a~~~L~ev~~d~~~~~~~~~y~~sl~~~~----~  314 (677)
T PF05664_consen  239 EVDEVLELLKKTWSILGITQTLHNVCFAWVLFRQYVATGEPDLLKAAIQQLQEVAKDAKRATKDPLYLKSLRCSV----E  314 (677)
T ss_pred             hHHHHHHHHHHHhHHhCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhccccccchhhhhhhhccc----c
Confidence            999999999999999999999999999999999999999999999999999999999987899999999999865    7


Q ss_pred             cccHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCc-chhhHHHHHHHHhhhcCCCchhhhhhccCccchHHHHHHHHHHHH
Q 037655          479 KDNLSLLQAIFVSISIWCDSKLQDYHRHFSQEPS-NFKRVMALASTVGVFTPGDCAEIKLTKLHTSNDNAARKVKGYVEK  557 (1125)
Q Consensus       479 ~~d~~ll~s~LssI~~w~~krL~dyH~~f~~~~~-~me~i~~v~~~~~~il~eD~~~~~~~~~~~~~~~~~~~vd~yIrs  557 (1125)
                      ..++++|+++|++|++|++|||+|||+||+.|+. .|+++++|++.+++|+++|++.+++.+.+   ..++++|+.|||+
T Consensus       315 ~~~l~ll~s~L~si~~W~ekrL~dYH~~f~~~~~~~me~llsl~~~a~~il~ed~~~~~~~~~~---~~~~~~ie~YIrs  391 (677)
T PF05664_consen  315 TSDLSLLSSVLSSIQGWAEKRLLDYHDHFSEGNIGVMEGLLSLAVSAAKILGEDVSREYRRKRS---KVARSRIESYIRS  391 (677)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHHHHhhchhHHHHhhhc---cchHHHHHHHHHH
Confidence            7899999999999999999999999999999997 59999999999999999999887653221   2789999999999


Q ss_pred             HHHHHHHHHhhcccccccccCchHHHHHHHHHHHHHHHHhhhccchhhhhccchhhHhHHHHHHHHHhhhHHHHhhhhhc
Q 037655          558 SIETACRQVASTIDLESKVQRSHPLALLANELRSIAERELTVFWPAICHWCSEALTISAIMLHHFYREILKPFLQGVTSL  637 (1125)
Q Consensus       558 S~~~af~~~le~~~~~~~~e~~~vL~~Lak~i~~La~ke~~~fSPiL~rwhP~a~~Vaa~~Lh~~yg~~Lk~fl~~v~~l  637 (1125)
                      |+++||++..+..++..+.++.|+|++||++|++||.+|+++|||+|++|||++++|||++||.|||++||+|++++++|
T Consensus       392 Si~~Af~~~~~~~~~~~~~~~~~~L~~LA~ei~~la~~e~~~FsPiLk~whP~a~~VAa~~LH~~Yg~~Lk~~L~~~~~L  471 (677)
T PF05664_consen  392 SIKAAFARMASSVDSRSDSEPSHVLAQLAKEIKELAKKEKEVFSPILKRWHPNAAGVAAATLHSCYGNELKQFLSGVTHL  471 (677)
T ss_pred             HHHHHHHhhhhhhhhcccccchHHHHHHHHHHHHHHHHhHHhcCchhcccCchHHHHHHHHHHHHHHHHHHHHHcccccC
Confidence            99999999998888888889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHhhhhhcCC----------------------CCcccccccHHHHHHHHHHHHHHHHHHHHhhhccCCcccCCCC
Q 037655          638 SEDARLVLSAANKMF----------------------LFGQIGEVCRPIILDWLIAQHAHILEWTGRAFDLEDWEPLSFQ  695 (1125)
Q Consensus       638 t~d~~~VL~aAd~LE----------------------~Pf~iE~~~~~~V~~Wi~~~~~ki~ewV~rAiq~E~W~P~s~~  695 (1125)
                      |+++++||++|++||                      +||+||+++.+||++||+++.+++.+||+||+++|+|+|++++
T Consensus       472 T~d~v~VL~aA~~LEk~Lvq~~~~~~edggk~~~rem~Py~vE~~i~~lv~~Wi~~~~~~l~ewv~ra~~qE~W~P~S~~  551 (677)
T PF05664_consen  472 TPDVVEVLQAADKLEKALVQMVSVDCEDGGKSLIREMPPYEVESLISNLVKRWIQEQLERLNEWVDRAIKQEKWNPRSKE  551 (677)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCCC
Confidence            999999999999997                      8999999999999999999999999999999999999999999


Q ss_pred             ccCcccHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchhhhhhh--hH
Q 037655          696 QRQGASIIEVFRIIEETVDQFFGMNLPLDIIHLQALLSIIFHSLDAYLQRLLNQLVEQKHLYPSAPPLTRYEETVL--PM  773 (1125)
Q Consensus       696 e~hSsSVVDIFrm~~Etvd~ffqL~wp~~a~lL~aLs~Gid~~lq~Y~~~v~~~cgske~liP~~P~LTR~~~e~~--~f  773 (1125)
                      ++||+|||||||||+||||+||+|+||+++.+|++|++||+++||+||++++++||++++++|++|+||||+++++  .+
T Consensus       552 e~hs~SvVEvfri~~eTvd~ff~L~~~~~~~~l~~L~~gld~~lq~Y~~~v~~~~gsk~~liP~~P~LTR~~~~sk~~~~  631 (677)
T PF05664_consen  552 ERHSPSVVEVFRIFNETVDQFFQLPWPMHADFLQALSKGLDKALQRYCEKVEQSCGSKQSLIPPLPPLTRCKKDSKFKKL  631 (677)
T ss_pred             CCCcchHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCchhhhhhhhhhHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999864  46


Q ss_pred             HHhhcccccccccccccccccccccceeeeeccHHHHHHHHHHHHH
Q 037655          774 LKKKLLEFTVLDKSVSEKLNELTIPKLCIRLNTLQYIQKQVSVLEE  819 (1125)
Q Consensus       774 ~Kkkv~~~~~P~~~~~~~~~~~~~~~LCVrLNNLeyi~~qLd~LEk  819 (1125)
                      |||+..++..+.++...+.+++++|++|||||||||+++||++|||
T Consensus       632 ~Kk~~~~~~~~~~~~~~~~~~~~~~~lcVrLNtL~yil~qL~~LEK  677 (677)
T PF05664_consen  632 WKKKWKSSTNPDERFSSKINSQFTPRLCVRLNTLEYILSQLDKLEK  677 (677)
T ss_pred             HHHHhcCccccccccccCcccCccCceeeeecHHHHHHHHHHhhcC
Confidence            8888877666666655544578899999999999999999999986

>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]	Back alignment and domain information

>PF10540 Membr_traf_MHD: Munc13 (mammalian uncoordinated) homology domain; InterPro: IPR019558 Mammalian uncoordinated homology 13 (Munc13) proteins constitute a family of three highly homologous molecules (Munc13-1, Munc13-2 and Munc13-3) with homology to Caenorhabditis elegans unc-13p	Back alignment and domain information

>PF06046 Sec6: Exocyst complex component Sec6; InterPro: IPR010326 Sec6 is a component of the multiprotein exocyst complex	Back alignment and domain information

>PF04437 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR007528 This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control [], that interacts with Rad50 only during late S and G2/M phases	Back alignment and domain information

>PF04091 Sec15: Exocyst complex subunit Sec15-like ; InterPro: IPR007225 Sec15 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane	Back alignment and domain information

>COG5173 SEC6 Exocyst complex subunit SEC6 [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]	Back alignment and domain information

>KOG2286 consensus Exocyst complex subunit SEC6 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0412 consensus Golgi transport complex COD1 protein [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1125
3swh_A		341	MUNC13-1, protein UNC-13 homolog A; alpha helical,	3e-28
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-11
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-07

>3swh_A MUNC13-1, protein UNC-13 homolog A; alpha helical, neurotransmitter release, snare motif, exocyt; 2.65A {Rattus norvegicus} Length = 341	Back alignment and structure

 Score =  116 bits (291), Expect = 3e-28
 Identities = 50/370 (13%), Positives = 122/370 (32%), Gaps = 65/370 (17%)

Query: 662  RPIILDWLIAQHAHILEWTGRAFDLEDWEP---LSFQQRQGASIIEVFRIIEETVDQFFG 718
             P ++ WL        ++   A + +  +     S       S+++VF  + ++ +    
Sbjct: 12   EPFVIQWLDENEEVSRDFLHGALERDKKDGFQQTSEHALFSCSVVDVFSQLNQSFEIIKK 71

Query: 719  MNLPLDIIHLQALLSIIFHSLDAYLQRLLNQLVEQKHLYPSAPPLTRYEETVLPMLKKKL 778
            +  P   I               Y++R    +      Y                     
Sbjct: 72   LECPDPQIVGH------------YMRRFAKTISNVLLQYAD------------------- 100

Query: 779  LEFTVLDKSVSEKLNELTIPKLCIRLNTLQYIQKQVSVLEEGIRKSWALVGPAVDQASAE 838
                ++ K  +   ++      CI +N  Q ++ Q+  + E           A+     +
Sbjct: 101  ----IVSKDFASYCSKEKEKVPCILMNNTQQLRVQLEKMFE-----------AMGGKELD 145

Query: 839  GETEESLERNFLTSSEAVDELFITTLNIIRDTATGAIRKICDFIGARVVFWDLRDSFLCC 898
             E   +L+   +  +  +DEL        +      +R++ D +    V          C
Sbjct: 146  AEASGTLKELQVKLNNVLDELSHVFATSFQPHIEECVRQMGDIL--SQVKGTGNVPASAC 203

Query: 899  LYRGSVESARLESFLTHIDTVLDHICSLIDDSLRDFVVLSICRASLEGYVWVLLDGG--- 955
                      L+  +  +D+ L     + + ++   V+  + +  +      ++      
Sbjct: 204  SSVAQDADNVLQPIMDLLDSNLTLFAKICEKTVLKRVLKELWKLVMNTMERTIVLPPEFS 263

Query: 956  ---------PSRAFSNSDITMMEDDLNTLKEFFIAGGEGLPRSLVEREAKYA--EEILGL 1004
                      +++ +     ++E  L+T+K++F AGG GL ++ +E+          L L
Sbjct: 264  KLKDHMVREEAKSLTPKQCAVVELALDTIKQYFHAGGVGLKKTFLEKSPDLQSLRYALSL 323

Query: 1005 FTLQSETLIR 1014
            +T  ++ LI+
Sbjct: 324  YTQATDLLIK 333

PyMOL of 3swh

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		1125
3swh_A		341	MUNC13-1, protein UNC-13 homolog A; alpha helical,	100.0
2fji_1		399	Exocyst complex component SEC6; exocytosis, tandem	98.93
3hr0_A		263	COG4; conserved oligomeric golgi complex, intracel	95.38
2a2f_X		325	Exocyst complex component SEC15; all helical struc	94.84

>3swh_A MUNC13-1, protein UNC-13 homolog A; alpha helical, neurotransmitter release, snare motif, exocyt; 2.65A {Rattus norvegicus}	Back alignment and structure

Probab=100.00  E-value=4e-44  Score=403.00  Aligned_cols=294  Identities=15%  Similarity=0.260  Sum_probs=227.1

Q ss_pred             ccccccHHHHHHHHHHHHHHHHHHHHhhhccCCcccCC---CCccCcccHHHHHHHHHHHHHHHHcCCCC---ccHHHHH
Q 037655          656 QIGEVCRPIILDWLIAQHAHILEWTGRAFDLEDWEPLS---FQQRQGASIIEVFRIIEETVDQFFGMNLP---LDIIHLQ  729 (1125)
Q Consensus       656 ~iE~~~~~~V~~Wi~~~~~ki~ewV~rAiq~E~W~P~s---~~e~hSsSVVDIFrm~~Etvd~ffqL~wp---~~a~lL~  729 (1125)
                      +.+.+|.|+|++|+++..+++.+||++|++.|+|+|.+   ++.+||+||||+|+||+|+++.|.+|+||   ..+.|++
T Consensus         6 ~~~~wF~~~V~~Wl~~~~~k~~~~v~~Ai~~Dk~~~~~~~~~~~~hSsSvvDif~~~~Q~~~~~~~L~WpD~~~~~~f~t   85 (341)
T 3swh_A            6 EYPAWFEPFVIQWLDENEEVSRDFLHGALERDKKDGFQQTSEHALFSCSVVDVFSQLNQSFEIIKKLECPDPQIVGHYMR   85 (341)
T ss_dssp             ---CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSSSCCSCTHHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccccccCccccchHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence            45789999999999999999999999999999999986   67899999999999999999999999999   4568999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchhhhhhhhHHHhhcccccccccccccccccccccceeeeeccHHH
Q 037655          730 ALLSIIFHSLDAYLQRLLNQLVEQKHLYPSAPPLTRYEETVLPMLKKKLLEFTVLDKSVSEKLNELTIPKLCIRLNTLQY  809 (1125)
Q Consensus       730 aLs~Gid~~lq~Y~~~v~~~cgske~liP~~P~LTR~~~e~~~f~Kkkv~~~~~P~~~~~~~~~~~~~~~LCVrLNNLey  809 (1125)
                      .|++.|.+++..||+.+...+.   ++         |..                          .+...+||.+||+||
T Consensus        86 ~l~~~i~~~~~~Y~~~l~~~~~---~~---------~~~--------------------------e~~~~~Cv~lNNie~  127 (341)
T 3swh_A           86 RFAKTISNVLLQYADIVSKDFA---SY---------CSK--------------------------EKEKVPCILMNNTQQ  127 (341)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH---HH---------CCT--------------------------TSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH---hh---------hhh--------------------------hcccchhhhcccHHH
Confidence            9999999999999999987762   11         110                          013459999999999


Q ss_pred             HHHHHHHHHHHHHhhhcccCCccccccccccchhhhhhhcccCchhhhhHHHhHHHHHHHHHHHHHHHHHhhhhceeeee
Q 037655          810 IQKQVSVLEEGIRKSWALVGPAVDQASAEGETEESLERNFLTSSEAVDELFITTLNIIRDTATGAIRKICDFIGARVVFW  889 (1125)
Q Consensus       810 i~~qLd~LEk~I~~~w~~~~~~~~l~~a~~~t~~s~~~~l~~~~~~~~~~~~~~F~~ar~a~~~aI~~l~e~ia~rlVF~  889 (1125)
                      +|.+|++|.+.+  .|...                            ....+...+..+..++..+++++...|.++. .
T Consensus       128 lR~~L~~l~~~l--~~~~l----------------------------~~~~~~~~~~lq~~l~~vl~~l~~~~~~~~~-~  176 (341)
T 3swh_A          128 LRVQLEKMFEAM--GGKEL----------------------------DAEASGTLKELQVKLNNVLDELSHVFATSFQ-P  176 (341)
T ss_dssp             HHHHHHHHHHHT--TTTTS----------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH-H
T ss_pred             HHHHHHHHHHhc--chhhH----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence            999999999977  33211                            1234457777888899999998887777765 4


Q ss_pred             ccchhhh---hhccc--c--cc-----------hhhhHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 037655          890 DLRDSFL---CCLYR--G--SV-----------ESARLESFLTHIDTVLDHICSLIDDSLRDFVVLSICRASLEGYVWVL  951 (1125)
Q Consensus       890 Dlr~~~~---d~LYv--g--~V-----------s~~RIeplL~~Ld~~L~~l~s~l~d~~r~rvv~~vmkAs~e~fL~VL  951 (1125)
                      ++++..-   ..|+.  |  .+           .+++|+|||+|||++|..+++++++++++||++++|++++++++.++
T Consensus       177 ~i~~~v~~m~~~l~~i~~~~~~~~~~~~~~~~~~~~ai~PLm~yLd~~L~~l~~~L~~~~f~rvL~~lW~~~l~~l~~~i  256 (341)
T 3swh_A          177 HIEECVRQMGDILSQVKGTGNVPASACSSVAQDADNVLQPIMDLLDSNLTLFAKICEKTVLKRVLKELWKLVMNTMERTI  256 (341)
T ss_dssp             HHHHHHHHHHHHHHTCC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhhcccccCCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444211   11121  1  11           26789999999999999999999999999999999999999999988


Q ss_pred             ------------hcCCCCCCCChhHHHHHHHHHHHHHHhhhcCCCCCcHHHHHH--HHHHHHHHHhhhcccHHHHHHHHH
Q 037655          952 ------------LDGGPSRAFSNSDITMMEDDLNTLKEFFIAGGEGLPRSLVER--EAKYAEEILGLFTLQSETLIRMLM 1017 (1125)
Q Consensus       952 ------------L~GGpsR~Fs~~D~~~lEeDL~~Lk~fF~A~GEGLp~elVe~--~~~~v~~vL~L~~~~Te~LIe~f~ 1017 (1125)
                                  ++||++|.|+++++++++++|+.|++||||+|+|||.+.+|+  +++.++++|.||+++|++||++|.
T Consensus       257 ~lP~~~~~~~~~~~~~~~r~~~~~~~~~l~~~L~~L~~fFhA~G~GL~~~~Leks~~~~~l~~~L~L~~~~T~~LI~~f~  336 (341)
T 3swh_A          257 VLPPEFSKLKDHMVREEAKSLTPKQCAVVELALDTIKQYFHAGGVGLKKTFLEKSPDLQSLRYALSLYTQATDLLIKTFV  336 (341)
T ss_dssp             TSCGGGCSSSCC----------CTTHHHHHHHHHHHHHHHHGGGTSCCHHHHHTCHHHHHHHHHHHHC------------
T ss_pred             cccchhhhhHhhhcccccCCCCHHHHHHHHHHHHHHHHHhccCCCCCCHHHHccChhHHHHHHHHHHhcCCHHHHHHHHH
Confidence                        689999999999999999999999999999999999999986  599999999999999999999996


Q ss_pred             H
Q 037655         1018 S 1018 (1125)
Q Consensus      1018 ~ 1018 (1125)
                      .
T Consensus       337 ~  337 (341)
T 3swh_A          337 Q  337 (341)
T ss_dssp             -
T ss_pred             h
Confidence            4

PyMOL of 3swh

>2fji_1 Exocyst complex component SEC6; exocytosis, tandem helical bundles, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}	Back alignment and structure

>3hr0_A COG4; conserved oligomeric golgi complex, intracellular trafficking, vesicle tethering, multisubunit tethering complex, exocyst; 1.90A {Homo sapiens}	Back alignment and structure

>2a2f_X Exocyst complex component SEC15; all helical structure, protein transport; 2.50A {Drosophila melanogaster}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00