Citrus Sinensis ID: 037659

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200--
Protein Sequence
MQASQFLVTSTKRPAACSPLVPNPAHHRLTAASSTVRFRQISAVAAPPKPKTHSMPPEKVEVFKSLETWATNNVLPLLKPVEKCWQPQDFLPDPTLPFSDFTDQVRALRERTAGLPDDYFVVLVGDMITEDAIPTYQTMINTLDGVRDETGASSSPWAIWNRSWTAEENRHGDLLRSFLYLSGRVDMLMIEKTVQYLISAGM
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHcccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHcccccccccccccccHHcccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccHccccccccccccccccccccccccccccHHHHHHHHHcHHHHHHHcHHHcccHHHcccHHHHccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mqasqflvtstkrpaacsplvpnpahhrltaasstvrfrqisavaappkpkthsmppekVEVFKSLETWatnnvlpllkpvekcwqpqdflpdptlpfsdfTDQVRALRERTAGLPDDYFVVLVGDmitedaipTYQTMINTLdgvrdetgassspwaiwnrswtaeenrhgDLLRSFLYLSGRVDMLMIEKTVQYLISAGM
Flexible Loop (DISEMBL)
mqasqflvtstkrpaacsplvpnpaHHRLTAASSTVRFRQISAVaappkpkthsmpPEKVEVFKSLETWATNNVLPLLKPVEKCWQPQDFLPDPTLPFSDFTDQVRALRErtaglpddYFVVLVGDMITEDAIPTYQTMINTLDGVRDETGASSSPWAIWNRSWTAEENRHGDLLRSFLYLSGRVDMLMIEKTVQYLISAGM
Low Complexity Region (SEG)
MQASQFLVTSTKRPAACSPLVPNPAHHRLTAASSTVRFRQISAVAAPPKPKTHSMPPEKVEVFKSLETWATNNVLPLLKPVEKCWQPQDFLPDPTLPFSDFTDQVRALRERTAGLPDDYFVVLVGDMITEDAIPTYQTMINTLDGVRDETGASSSPWAIWNRSWTAEENRHGDLLRSFLYLSGRVDMLMIEKTVQYLISAGM
Disordered region (IsUnstruct)
************************************************************EVFKSLETWATNNVLPLLKPVEKCWQPQDFLPDPTLPFSDFTDQVRALRERTAGLPDDYFVVLVGDMITEDAIPTYQTMINTLDGVRDETGASSSPWAIWNRSWTAEENRHGDLLRSFLYLSGRVDMLMIEKTVQYLI****
Disordered Region (DISOPRED)
************************************************K*****MPPEKVEVFKSLETWATNNVLPLLKPVEKCWQPQDFLPDPTLPFSDFTDQVRALRERTAGLPDDYFVVLVGDMITEDAIPTYQTMINTLDGVRDETGASSSPWAIWNRSWTAEENRHGDLLRSFLYLSGRVDMLMIEKTVQYLISAGM
Disordered Region (DISEMBL)
*************PAACSPLVPNPAHHRLTAASSTVRFRQISAVA***********PEKVEVFKSLETWATNNVLPLLKPVEKCWQPQDFLPDPTLPFSDFTDQVRALRERTAGLPDDYFVVLVGDMITEDAIPTYQTMINTLDGVRDETGASSSPWAIWNRSWTAEENRHGDLLRSFLYLSGRVDMLMIEKTVQYLISAGM
Disordered Region (DISPRO)
**************************************************KTHSMPPEKVEVFKSLETWATNNVLPLLKPVEKCWQPQDFLPDPTLPFSDFTDQVRALRERTAGLPDDYFVVLVGDMITEDAIPTYQTMINTLDGVRDETGASSSPWAIWNRSWTAEENRHGDLLRSFLYLSGRVDMLMIEKTVQYLISAG*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQASQFLVTSTKRPAACSPLVPNPAHHRLTAASSTVRFRQISAVAAPPKPKTHSMPPEKVEVFKSLETWATNNVLPLLKPVEKCWQPQDFLPDPTLPFSDFTDQVRALRERTAGLPDDYFVVLVGDMITEDAIPTYQTMINTLDGVRDETGASSSPWAIWNRSWTAEENRHGDLLRSFLYLSGRVDMLMIEKTVQYLISAGM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	202	2.2.26 [Sep-21-2011]
Q84VY3	391	Acyl-[acyl-carrier-protei	yes	no	0.806	0.416	0.757	8e-75
Q01753	398	Acyl-[acyl-carrier-protei	N/A	no	0.920	0.467	0.63	3e-67
Q8LJJ9	381	Acyl-[acyl-carrier-protei	yes	no	0.940	0.498	0.620	1e-65
B8A7A3	381	Acyl-[acyl-carrier-protei	N/A	no	0.940	0.498	0.620	1e-65
Q42807	411	Acyl-[acyl-carrier-protei	no	no	0.732	0.360	0.75	2e-65
P32061	396	Acyl-[acyl-carrier-protei	N/A	no	0.737	0.376	0.741	4e-65
P22337	396	Acyl-[acyl-carrier-protei	N/A	no	0.732	0.373	0.75	6e-65
Q41319	393	Acyl-[acyl-carrier-protei	N/A	no	0.945	0.486	0.618	9e-65
P46253	393	Acyl-[acyl-carrier-protei	N/A	no	0.737	0.379	0.735	4e-64
Q42770	397	Acyl-[acyl-carrier-protei	N/A	no	0.732	0.372	0.736	5e-64

>sp|Q84VY3|STAD6_ARATH Acyl-[acyl-carrier-protein] desaturase 6, chloroplastic OS=Arabidopsis thaliana GN=S-ACP-DES6 PE=2 SV=2

 Score =  279 bits (714), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 128/169 (75%), Positives = 148/169 (87%), Gaps = 6/169 (3%)

Query: 40  QISAVAAPPKP------KTHSMPPEKVEVFKSLETWATNNVLPLLKPVEKCWQPQDFLPD 93
           +ISAVAAP +P      K H+MPPEK+E+FKSL+ WA + +LPLLKPV++CWQP  FLPD
Sbjct: 34  KISAVAAPVRPALKHQNKIHTMPPEKMEIFKSLDGWAKDQILPLLKPVDQCWQPASFLPD 93

Query: 94  PTLPFSDFTDQVRALRERTAGLPDDYFVVLVGDMITEDAIPTYQTMINTLDGVRDETGAS 153
           P LPFS+FTDQVR LRERTA LPD+YFVVLVGDMITEDA+PTYQTMINTLDGVRDETGAS
Sbjct: 94  PALPFSEFTDQVRELRERTASLPDEYFVVLVGDMITEDALPTYQTMINTLDGVRDETGAS 153

Query: 154 SSPWAIWNRSWTAEENRHGDLLRSFLYLSGRVDMLMIEKTVQYLISAGM 202
            S WA W R+WTAEENRHGDLLR++LYLSGRVDMLM+E+TVQ+LI +GM
Sbjct: 154 ESAWASWTRAWTAEENRHGDLLRTYLYLSGRVDMLMVERTVQHLIGSGM 202

Converts stearoyl-ACP to oleoyl-ACP by introduction of a cis double bond between carbons Delta(9) and Delta(10) of the acyl chain.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 9EC: .EC: 2

>sp|Q01753|STAD_SIMCH Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Simmondsia chinensis PE=2 SV=1

 Score =  254 bits (648), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 126/200 (63%), Positives = 146/200 (73%), Gaps = 14/200 (7%)

Query: 15  AACSPLVPNPAH---HRLTAASSTVRF--RQISAVAAPPKP-------KTHSMPPEKVEV 62
           A  S  +P   H   HR+  ASST+    ++I     P  P       KTHSMPP+K+E+
Sbjct: 15  AVTSSGLPRSYHLRSHRVFMASSTIGITSKEIPNAKKPHMPPREAHVQKTHSMPPQKIEI 74

Query: 63  FKSLETWATNNVLPLLKPVEKCWQPQDFLPDPTLPFSDFTDQVRALRERTAGLPDDYFVV 122
           FKSLE WA  NVL  LKPVEKCWQPQDFLPDP      F DQV+ LRERT  +PD+Y VV
Sbjct: 75  FKSLEGWAEENVLVHLKPVEKCWQPQDFLPDPA--SEGFMDQVKELRERTKEIPDEYLVV 132

Query: 123 LVGDMITEDAIPTYQTMINTLDGVRDETGASSSPWAIWNRSWTAEENRHGDLLRSFLYLS 182
           LVGDMITE+A+PTYQTM+NTLDGVRDETGAS + WAIW R+WTAEENRHGDLL  +LYL+
Sbjct: 133 LVGDMITEEALPTYQTMLNTLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLNKYLYLT 192

Query: 183 GRVDMLMIEKTVQYLISAGM 202
           GRVDM  IEKT+QYLI +GM
Sbjct: 193 GRVDMKQIEKTIQYLIGSGM 212

Converts stearoyl-ACP to oleoyl-ACP by introduction of a cis double bond between carbons Delta(9) and Delta(10) of the acyl chain.

Simmondsia chinensis (taxid: 3999)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 2

>sp|Q8LJJ9|STAD1_ORYSJ Acyl-[acyl-carrier-protein] desaturase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0880800 PE=2 SV=1

 Score =  248 bits (634), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 121/195 (62%), Positives = 141/195 (72%), Gaps = 5/195 (2%)

Query: 8   VTSTKRPAACSPLVPNPAHHRLTAASSTVRFRQISAVAAPPKPKTHSMPPEKVEVFKSLE 67
           V  T R + C  +V   A  R     S           A  +  THSMPPEK EVF+SLE
Sbjct: 3   VVGTVRVSGCGAVV---APSRRQCRVSAAVLTAAETATATRRRVTHSMPPEKAEVFRSLE 59

Query: 68  TWATNNVLPLLKPVEKCWQPQDFLPDPTLPFSDFTDQVRALRERTAGLPDDYFVVLVGDM 127
            WA +++LPLLKPVE+CWQP DFLPD +     F  QV  LR R AGLPD+YFVVLVGDM
Sbjct: 60  GWARSSLLPLLKPVEECWQPTDFLPDSSSEM--FEHQVHELRARAAGLPDEYFVVLVGDM 117

Query: 128 ITEDAIPTYQTMINTLDGVRDETGASSSPWAIWNRSWTAEENRHGDLLRSFLYLSGRVDM 187
           ITE+A+PTYQTMINTLDGVRDETGAS+ PWA+W R+WTAEENRHGD+L  ++YLSGRVDM
Sbjct: 118 ITEEALPTYQTMINTLDGVRDETGASACPWAVWTRTWTAEENRHGDILGKYMYLSGRVDM 177

Query: 188 LMIEKTVQYLISAGM 202
            M+EKTVQYLI +GM
Sbjct: 178 RMVEKTVQYLIGSGM 192

Converts stearoyl-ACP to oleoyl-ACP by introduction of a cis double bond between carbons Delta(9) and Delta(10) of the acyl chain.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 2

>sp|B8A7A3|STAD1_ORYSI Acyl-[acyl-carrier-protein] desaturase 1, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_04666 PE=3 SV=1

 Score =  248 bits (634), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 121/195 (62%), Positives = 141/195 (72%), Gaps = 5/195 (2%)

Query: 8   VTSTKRPAACSPLVPNPAHHRLTAASSTVRFRQISAVAAPPKPKTHSMPPEKVEVFKSLE 67
           V  T R + C  +V   A  R     S           A  +  THSMPPEK EVF+SLE
Sbjct: 3   VVGTVRVSGCGAVV---APSRRQCRVSAAVLTAAETATATRRRVTHSMPPEKAEVFRSLE 59

Query: 68  TWATNNVLPLLKPVEKCWQPQDFLPDPTLPFSDFTDQVRALRERTAGLPDDYFVVLVGDM 127
            WA +++LPLLKPVE+CWQP DFLPD +     F  QV  LR R AGLPD+YFVVLVGDM
Sbjct: 60  GWARSSLLPLLKPVEECWQPTDFLPDSSSEM--FEHQVHELRARAAGLPDEYFVVLVGDM 117

Query: 128 ITEDAIPTYQTMINTLDGVRDETGASSSPWAIWNRSWTAEENRHGDLLRSFLYLSGRVDM 187
           ITE+A+PTYQTMINTLDGVRDETGAS+ PWA+W R+WTAEENRHGD+L  ++YLSGRVDM
Sbjct: 118 ITEEALPTYQTMINTLDGVRDETGASACPWAVWTRTWTAEENRHGDILGKYMYLSGRVDM 177

Query: 188 LMIEKTVQYLISAGM 202
            M+EKTVQYLI +GM
Sbjct: 178 RMVEKTVQYLIGSGM 192

Converts stearoyl-ACP to oleoyl-ACP by introduction of a cis double bond between carbons Delta(9) and Delta(10) of the acyl chain.

Oryza sativa subsp. indica (taxid: 39946)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 2

>sp|Q42807|STAD_SOYBN Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Glycine max GN=ACPD PE=2 SV=1

 Score =  248 bits (632), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 114/152 (75%), Positives = 130/152 (85%), Gaps = 4/152 (2%)

Query: 52  THSMPPEKVEVFKSLETWATNNVLPLLKPVEKCWQPQDFLPDPTLPFSD-FTDQVRALRE 110
           THSMPP+K+E+F+SLE WA  N+L  LKPVEKCWQPQDFLPDP+   SD F +QV+ LRE
Sbjct: 57  THSMPPQKIEIFQSLEDWAEENILAHLKPVEKCWQPQDFLPDPS---SDGFEEQVKELRE 113

Query: 111 RTAGLPDDYFVVLVGDMITEDAIPTYQTMINTLDGVRDETGASSSPWAIWNRSWTAEENR 170
           R   LPDDYFVVLVGDMITE+A+PTYQTM+NTLDGVRDETGAS + WAIW R+WTAEENR
Sbjct: 114 RAKELPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTSWAIWTRAWTAEENR 173

Query: 171 HGDLLRSFLYLSGRVDMLMIEKTVQYLISAGM 202
           HGDLL  +LYLSGRVDM  IEKT+QYLI +GM
Sbjct: 174 HGDLLNKYLYLSGRVDMKQIEKTIQYLIGSGM 205

Converts stearoyl-ACP to oleoyl-ACP by introduction of a cis double bond between carbons Delta(9) and Delta(10) of the acyl chain.

Glycine max (taxid: 3847)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 2

>sp|P32061|STAD_CUCSA Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Cucumis sativus PE=2 SV=1

 Score =  247 bits (631), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 112/151 (74%), Positives = 128/151 (84%), Gaps = 2/151 (1%)

Query: 52  THSMPPEKVEVFKSLETWATNNVLPLLKPVEKCWQPQDFLPDPTLPFSDFTDQVRALRER 111
           THSMPP+K+E+FKSLE WA  N+L  LKPVE+CWQPQDFLPD    F  F +QVR LRER
Sbjct: 62  THSMPPQKMEIFKSLEDWAEENLLVHLKPVERCWQPQDFLPDSA--FEGFHEQVRELRER 119

Query: 112 TAGLPDDYFVVLVGDMITEDAIPTYQTMINTLDGVRDETGASSSPWAIWNRSWTAEENRH 171
              LPD+YFVVLVGDMITE+A+PTYQTM+NTLDGVRDETGAS +PWAIW R+WTAEENRH
Sbjct: 120 AKELPDEYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASPTPWAIWTRAWTAEENRH 179

Query: 172 GDLLRSFLYLSGRVDMLMIEKTVQYLISAGM 202
           GDLL  +LYLSGRVDM  +EKT+QYLI +GM
Sbjct: 180 GDLLNKYLYLSGRVDMRQVEKTIQYLIGSGM 210

Converts stearoyl-ACP to oleoyl-ACP by introduction of a cis double bond between carbons Delta(9) and Delta(10) of the acyl chain.

Cucumis sativus (taxid: 3659)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 2

>sp|P22337|STAD_RICCO Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Ricinus communis PE=1 SV=1

 Score =  246 bits (629), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 114/152 (75%), Positives = 129/152 (84%), Gaps = 4/152 (2%)

Query: 52  THSMPPEKVEVFKSLETWATNNVLPLLKPVEKCWQPQDFLPDPTLPFSD-FTDQVRALRE 110
           THSMPP+K+E+FKSL+ WA  N+L  LKPVEKCWQPQDFLPDP    SD F +QVR LRE
Sbjct: 62  THSMPPQKIEIFKSLDNWAEENILVHLKPVEKCWQPQDFLPDPA---SDGFDEQVRELRE 118

Query: 111 RTAGLPDDYFVVLVGDMITEDAIPTYQTMINTLDGVRDETGASSSPWAIWNRSWTAEENR 170
           R   +PDDYFVVLVGDMITE+A+PTYQTM+NTLDGVRDETGAS + WAIW R+WTAEENR
Sbjct: 119 RAKEIPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASPTSWAIWTRAWTAEENR 178

Query: 171 HGDLLRSFLYLSGRVDMLMIEKTVQYLISAGM 202
           HGDLL  +LYLSGRVDM  IEKT+QYLI +GM
Sbjct: 179 HGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGM 210

Converts stearoyl-ACP to oleoyl-ACP by introduction of a cis double bond between carbons Delta(9) and Delta(10) of the acyl chain.

Ricinus communis (taxid: 3988)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 2

>sp|Q41319|STAD_SOLCO Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Solanum commersonii PE=2 SV=2

 Score =  246 bits (627), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 123/199 (61%), Positives = 142/199 (71%), Gaps = 8/199 (4%)

Query: 8   VTSTKRPAACSPLVPNPAHHRLTAASSTVRFRQISAVAAPPKPK----THSMPPEKVEVF 63
           + +T+RP  CSPL         T    +V    +    +PP+      THSMPPEK E+F
Sbjct: 13  IKTTRRP--CSPLRSPRVFMASTLRPPSVEDGNVKKPFSPPREVHVQVTHSMPPEKREIF 70

Query: 64  KSLETWATNNVLPLLKPVEKCWQPQDFLPDPTLPFSDFTDQVRALRERTAGLPDDYFVVL 123
            SL  WA NN+L  LKPVEKCWQ  DFLPDP      F DQV+ LRER   +PDDYFVVL
Sbjct: 71  DSLHGWADNNILVHLKPVEKCWQASDFLPDPAS--EGFEDQVKELRERCKEIPDDYFVVL 128

Query: 124 VGDMITEDAIPTYQTMINTLDGVRDETGASSSPWAIWNRSWTAEENRHGDLLRSFLYLSG 183
           VGDMITE+A+PTYQTM+NTLDGVRDETGAS +PWAIW R+WTAEENRHGDLL  +LYLSG
Sbjct: 129 VGDMITEEALPTYQTMLNTLDGVRDETGASLTPWAIWTRAWTAEENRHGDLLNKYLYLSG 188

Query: 184 RVDMLMIEKTVQYLISAGM 202
           RVDM  IEKT+QYLI +GM
Sbjct: 189 RVDMRQIEKTIQYLIGSGM 207

Converts stearoyl-ACP to oleoyl-ACP by introduction of a cis double bond between carbons Delta(9) and Delta(10) of the acyl chain.

Solanum commersonii (taxid: 4109)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 2

>sp|P46253|STAD_SOLTU Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Solanum tuberosum PE=2 SV=1

 Score =  244 bits (622), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 111/151 (73%), Positives = 125/151 (82%), Gaps = 2/151 (1%)

Query: 52  THSMPPEKVEVFKSLETWATNNVLPLLKPVEKCWQPQDFLPDPTLPFSDFTDQVRALRER 111
           THSMPPEK+EVF SL  WA  N+L  LKPVEKCWQP DFLPDP      F +QV+ LRER
Sbjct: 59  THSMPPEKIEVFDSLRDWAAQNLLVHLKPVEKCWQPTDFLPDPA--SEGFDEQVKELRER 116

Query: 112 TAGLPDDYFVVLVGDMITEDAIPTYQTMINTLDGVRDETGASSSPWAIWNRSWTAEENRH 171
              +PDDYFVVL+GDMITE+A+PTYQTMINTLDGVRDETGA+ +PWAIW R+WTAEENRH
Sbjct: 117 CKEIPDDYFVVLIGDMITEEALPTYQTMINTLDGVRDETGATVTPWAIWTRAWTAEENRH 176

Query: 172 GDLLRSFLYLSGRVDMLMIEKTVQYLISAGM 202
           GDLL  +LYLSGRVDM  IEKT+QYLI +GM
Sbjct: 177 GDLLNKYLYLSGRVDMKQIEKTIQYLIGSGM 207

Converts stearoyl-ACP to oleoyl-ACP by introduction of a cis double bond between carbons Delta(9) and Delta(10) of the acyl chain.

Solanum tuberosum (taxid: 4113)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 2

>sp|Q42770|STAD_GOSHI Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Gossypium hirsutum PE=2 SV=1

 Score =  243 bits (621), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 112/152 (73%), Positives = 127/152 (83%), Gaps = 4/152 (2%)

Query: 52  THSMPPEKVEVFKSLETWATNNVLPLLKPVEKCWQPQDFLPDPTLPFSD-FTDQVRALRE 110
           THSMPP K+E+FKSLE WA NN+L  LKPVEKCWQP DFLPDP    SD F +QV+ LRE
Sbjct: 62  THSMPPHKIEIFKSLEGWAENNILTHLKPVEKCWQPADFLPDPN---SDGFHEQVKELRE 118

Query: 111 RTAGLPDDYFVVLVGDMITEDAIPTYQTMINTLDGVRDETGASSSPWAIWNRSWTAEENR 170
           R   +PDDYFVVLVGDMITE+A+ TYQTM+NTLDG RDETGAS +PWAIW R+WTAEENR
Sbjct: 119 RAKEIPDDYFVVLVGDMITEEALSTYQTMLNTLDGTRDETGASLTPWAIWTRAWTAEENR 178

Query: 171 HGDLLRSFLYLSGRVDMLMIEKTVQYLISAGM 202
           HGDLL  +LYLSGRVDM  IE+T+QYLI +GM
Sbjct: 179 HGDLLNKYLYLSGRVDMRQIERTIQYLIGSGM 210

Converts stearoyl-ACP to oleoyl-ACP by introduction of a cis double bond between carbons Delta(9) and Delta(10) of the acyl chain.

Gossypium hirsutum (taxid: 3635)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 2

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	202
TAIR|locus:2029142	391	FTM1 "FLORAL TRANSITION AT THE	0.965	0.498	0.665	1e-68
TAIR|locus:2043899	401	SSI2 "AT2G43710" [Arabidopsis	0.727	0.366	0.748	1.9e-58
TAIR|locus:2076969	396	AT3G02630 [Arabidopsis thalian	0.732	0.373	0.733	8.4e-58
TAIR|locus:2181437	394	AT5G16240 [Arabidopsis thalian	0.732	0.375	0.713	1.6e-56
TAIR|locus:2181427	401	AT5G16230 [Arabidopsis thalian	0.925	0.466	0.577	5.3e-56
UNIPROTKB|E3PZS2	376	SAD2 "Acyl-[acyl-carrier-prote	0.688	0.369	0.559	1.4e-41
UNIPROTKB|Q50824	338	desA1 "Putative acyl-[acyl-car	0.534	0.319	0.333	8.3e-07

TAIR|locus:2029142 FTM1 "FLORAL TRANSITION AT THE MERISTEM1" [Arabidopsis thaliana (taxid:3702)]

 Score = 697 (250.4 bits), Expect = 1.0e-68, P = 1.0e-68
 Identities = 139/209 (66%), Positives = 167/209 (79%)

Query:     1 MQASQFLVTSTKRPAACSPLVPNPAHHRLTAASSTVRF-RQISAVAAPPKP------KTH 53
             M A + L++ T + A    L+P+P+    T  +S  R   +ISAVAAP +P      K H
Sbjct:     1 MLAHKSLLSFTTQWAT---LMPSPS----TFLASRPRGPAKISAVAAPVRPALKHQNKIH 53

Query:    54 SMPPEKVEVFKSLETWATNNVLPLLKPVEKCWQPQDFLPDPTLPFSDFTDQVRALRERTA 113
             +MPPEK+E+FKSL+ WA + +LPLLKPV++CWQP  FLPDP LPFS+FTDQVR LRERTA
Sbjct:    54 TMPPEKMEIFKSLDGWAKDQILPLLKPVDQCWQPASFLPDPALPFSEFTDQVRELRERTA 113

Query:   114 GLPDDYFVVLVGDMITEDAIPTYQTMINTLDGVRDETGASSSPWAIWNRSWTAEENRHGD 173
              LPD+YFVVLVGDMITEDA+PTYQTMINTLDGVRDETGAS S WA W R+WTAEENRHGD
Sbjct:   114 SLPDEYFVVLVGDMITEDALPTYQTMINTLDGVRDETGASESAWASWTRAWTAEENRHGD 173

Query:   174 LLRSFLYLSGRVDMLMIEKTVQYLISAGM 202
             LLR++LYLSGRVDMLM+E+TVQ+LI +GM
Sbjct:   174 LLRTYLYLSGRVDMLMVERTVQHLIGSGM 202

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0045300 "acyl-[acyl-carrier-protein

GO:0046914 "transition metal ion binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0001666 "response to hypoxia" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010089 "xylem development" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

TAIR|locus:2043899 SSI2 "AT2G43710" [Arabidopsis thaliana (taxid:3702)]

 Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
 Identities = 113/151 (74%), Positives = 126/151 (83%)

Query:    53 HSMPPEKVEVFKSLETWATNNVLPLLKPVEKCWQPQDFLPDPTLPFSD-FTDQVRALRER 111
             HSMPP+K+E+FKS+E WA  N+L  LK VEK WQPQDFLPDP    SD F DQVR LRER
Sbjct:    68 HSMPPQKIEIFKSMENWAEENLLIHLKDVEKSWQPQDFLPDPA---SDGFEDQVRELRER 124

Query:   112 TAGLPDDYFVVLVGDMITEDAIPTYQTMINTLDGVRDETGASSSPWAIWNRSWTAEENRH 171
                LPDDYFVVLVGDMITE+A+PTYQTM+NTLDGVRDETGAS + WAIW R+WTAEENRH
Sbjct:   125 ARELPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASPTSWAIWTRAWTAEENRH 184

Query:   172 GDLLRSFLYLSGRVDMLMIEKTVQYLISAGM 202
             GDLL  +LYLSGRVDM  IEKT+QYLI +GM
Sbjct:   185 GDLLNKYLYLSGRVDMRQIEKTIQYLIGSGM 215

GO:0004768 "stearoyl-CoA 9-desaturase activity" evidence=IDA;IMP

GO:0006631 "fatty acid metabolic process" evidence=IEA;IDA;IMP

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0045300 "acyl-[acyl-carrier-protein

GO:0046914 "transition metal ion binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006952 "defense response" evidence=IMP

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA;TAS

GO:0008610 "lipid biosynthetic process" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA;TAS

GO:2000022 "regulation of jasmonic acid mediated signaling pathway" evidence=TAS

GO:2000031 "regulation of salicylic acid mediated signaling pathway" evidence=TAS

GO:0051607 "defense response to virus" evidence=IEP;IMP

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0002213 "defense response to insect" evidence=IMP

GO:0009536 "plastid" evidence=TAS

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006655 "phosphatidylglycerol biosynthetic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0006816 "calcium ion transport" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

TAIR|locus:2076969 AT3G02630 [Arabidopsis thaliana (taxid:3702)]

 Score = 594 (214.2 bits), Expect = 8.4e-58, P = 8.4e-58
 Identities = 110/150 (73%), Positives = 124/150 (82%)

Query:    53 HSMPPEKVEVFKSLETWATNNVLPLLKPVEKCWQPQDFLPDPTLPFSDFTDQVRALRERT 112
             HSMPP+K+E+FKSLE WA   +L  LKPVEK WQP DFLP+P      F DQV+ LRER 
Sbjct:    62 HSMPPQKLEIFKSLEGWADETLLTYLKPVEKSWQPTDFLPEPES--EGFYDQVKELRERC 119

Query:   113 AGLPDDYFVVLVGDMITEDAIPTYQTMINTLDGVRDETGASSSPWAIWNRSWTAEENRHG 172
               LPDDYFVVLVGDMITE+A+PTYQTM+NTLDGVRDETGAS +PWAIW R+WTAEENRHG
Sbjct:   120 KELPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASPTPWAIWTRAWTAEENRHG 179

Query:   173 DLLRSFLYLSGRVDMLMIEKTVQYLISAGM 202
             DLL  +LYLSGRVDM  IEKT+QYLI +GM
Sbjct:   180 DLLNKYLYLSGRVDMRQIEKTIQYLIGSGM 209

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0045300 "acyl-[acyl-carrier-protein

GO:0046914 "transition metal ion binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0007020 "microtubule nucleation" evidence=RCA

TAIR|locus:2181437 AT5G16240 [Arabidopsis thaliana (taxid:3702)]

 Score = 582 (209.9 bits), Expect = 1.6e-56, P = 1.6e-56
 Identities = 107/150 (71%), Positives = 124/150 (82%)

Query:    53 HSMPPEKVEVFKSLETWATNNVLPLLKPVEKCWQPQDFLPDPTLPFSDFTDQVRALRERT 112
             +SMPP+K+E+FKSLE WA +N+L  LKPVEK WQP DFLP+P      F DQV+ LRER 
Sbjct:    60 YSMPPQKLEIFKSLEGWANDNLLAYLKPVEKSWQPTDFLPEPES--EGFYDQVKELRERC 117

Query:   113 AGLPDDYFVVLVGDMITEDAIPTYQTMINTLDGVRDETGASSSPWAIWNRSWTAEENRHG 172
               L DDY +VLVGDMITE+A+PTYQTMINTLDGVRDETGAS +PWA+W R+WTAEENRHG
Sbjct:   118 KELSDDYLIVLVGDMITEEALPTYQTMINTLDGVRDETGASPTPWAVWTRAWTAEENRHG 177

Query:   173 DLLRSFLYLSGRVDMLMIEKTVQYLISAGM 202
             DLL  +LYLSGRVDM  IEKT+QYLI +GM
Sbjct:   178 DLLNKYLYLSGRVDMRQIEKTIQYLIGSGM 207

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0045300 "acyl-[acyl-carrier-protein

GO:0046914 "transition metal ion binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2181427 AT5G16230 [Arabidopsis thaliana (taxid:3702)]

 Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
 Identities = 112/194 (57%), Positives = 138/194 (71%)

Query:     9 TSTKRPAACSPLVPNPAHHRLTAASSTVRFRQISAVAAPPKPKTHSMPPEKVEVFKSLET 68
             +S  R    S +  NPA  +    +    FR I  V       TH++P EK+E+FKS+E 
Sbjct:    26 SSPSRRLRVSCVTTNPARKKNETCN---HFRPIKEVN---NQLTHTIPQEKLEIFKSMEN 79

Query:    69 WATNNVLPLLKPVEKCWQPQDFLPDPTLPFSDFTDQVRALRERTAGLPDDYFVVLVGDMI 128
             WA   +LP LKPVE  WQPQDFLP P     +F D+V+ +RERT  +PDDYFVVLVGDMI
Sbjct:    80 WAEQKLLPYLKPVEDSWQPQDFLPAPEND-DEFYDRVKEIRERTKEIPDDYFVVLVGDMI 138

Query:   129 TEDAIPTYQTMINTLDGVRDETGASSSPWAIWNRSWTAEENRHGDLLRSFLYLSGRVDML 188
             TE+A+PTYQT +NTLDGV+DETG S SPWA+W R+WTAEENRHGDLL  +LYL+GRVDM 
Sbjct:   139 TEEALPTYQTTLNTLDGVKDETGGSLSPWAVWIRAWTAEENRHGDLLNKYLYLTGRVDMR 198

Query:   189 MIEKTVQYLISAGM 202
              +EKT+QYLI +GM
Sbjct:   199 HVEKTIQYLIGSGM 212

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0045300 "acyl-[acyl-carrier-protein

GO:0046914 "transition metal ion binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

UNIPROTKB|E3PZS2 SAD2 "Acyl-[acyl-carrier-protein] desaturase 2, chloroplastic" [Ophrys sphegodes (taxid:145953)]

 Score = 441 (160.3 bits), Expect = 1.4e-41, P = 1.4e-41
 Identities = 80/143 (55%), Positives = 109/143 (76%)

Query:    61 EVFKSLETWATNNVLPLLKPVEKCWQPQDFLPDPT-LPFSDFTDQVRALRERTAGLPDDY 119
             E F+SL++W  +N+L  LKPVEKCWQPQDFLPDP+ L   +  D VR + ER A +PD+ 
Sbjct:    44 EKFRSLDSWVEHNMLTFLKPVEKCWQPQDFLPDPSHLSAEELGDAVREIHERAAEIPDEV 103

Query:   120 FVVLVGDMITEDAIPTYQTMINTLDGVRDETGASSSPWAIWNRSWTAEENRHGDLLRSFL 179
             +V +VG+M+TE+A+PTYQ++I+++ G    T A S+PW  W R W+AEENRHGDLL  +L
Sbjct:   104 WVCMVGNMVTEEALPTYQSLISSVLG---GTVAGSTPWDRWIRGWSAEENRHGDLLNKYL 160

Query:   180 YLSGRVDMLMIEKTVQYLISAGM 202
             YL+GR+DM  +EKT+QYLI +GM
Sbjct:   161 YLTGRLDMRQVEKTIQYLIGSGM 183

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=IDA

GO:0045300 "acyl-[acyl-carrier-protein

GO:0055114 "oxidation-reduction process" evidence=IDA

UNIPROTKB|Q50824 desA1 "Putative acyl-[acyl-carrier-protein] desaturase desA1" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 132 (51.5 bits), Expect = 8.3e-07, P = 8.3e-07
 Identities = 42/126 (33%), Positives = 64/126 (50%)

Query:    81 VEKCWQPQDFLPDPTLPFSDFTDQVRALRERT-----AGLPDDYFVVLVGDMITEDAIPT 135
             + K W P D++P     +SD  +   AL  +      + L D   V +V +++TED +P+
Sbjct:    28 MHKPWNPHDYIP-----WSDGKNYY-ALGGQDWDPDQSKLSDVAQVAMVQNLVTEDNLPS 81

Query:   136 YQTMINTLDGVRDETGASSSPWAIWNRSWTAEENRHGDLLRSFLYLSGRVDMLMIEKTVQ 195
             Y   I    G+ D  GA    W  W   WTAEENRHG  LR +L ++  VD + +EK   
Sbjct:    82 YHREIAMNMGM-D--GA----WGQWVNRWTAEENRHGIALRDYLVVTRSVDPVELEKLRL 134

Query:   196 YLISAG 201
              +++ G
Sbjct:   135 EVVNRG 140


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.132   0.404    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      202       202   0.00090  111 3  11 22  0.48    32
                                                     31  0.46    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  602 (64 KB)
  Total size of DFA:  176 KB (2102 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.40u 0.08s 21.48t   Elapsed:  00:00:02
  Total cpu time:  21.40u 0.08s 21.48t   Elapsed:  00:00:02
  Start:  Thu May  9 17:17:16 2013   End:  Thu May  9 17:17:18 2013

GO:0005618 "cell wall" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0040007 "growth" evidence=IMP

GO:0052572 "response to host immune response" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q84VY3	STAD6_ARATH	1, ., 1, 4, ., 1, 9, ., 2	0.7573	0.8069	0.4168	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.14.19	0.766
4th Layer	1.14.19.2	0.824

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.V.169.1	acyl- [acyl-carrier protein] desaturase (EC-1.14.19.2); Converts stearoyl-ACP to oleoyl-ACP by introduction of a cis double bond between carbons Delta(9) and Delta(10) of the acyl chain (By similarity) (352 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.XVIII.628.1	3-oxoacyl-[acyl-carrier-protein] synthase II (EC-2.3.1.41) (435 aa)						•			0.899
	gw1.XV.2222.1	hypothetical protein (278 aa)						•			0.899
	gw1.XII.1777.1	hypothetical protein (278 aa)						•			0.899
	gw1.II.519.1	3-oxoacyl-[acyl-carrier-protein] synthase II (EC-2.3.1.179) (415 aa)						•			0.899
	gw1.II.3660.1	hypothetical protein (304 aa)						•			0.899
	gw1.I.9606.1	hypothetical protein (292 aa)						•			0.899
	gw1.I.9590.1	hypothetical protein (287 aa)						•			0.899
	gw1.I.8529.1	hypothetical protein (444 aa)						•			0.899
	grail3.0116012802	enoyl-[acyl-carrier-protein] reductase (EC-1.3.1.10) (395 aa)						•			0.899
	fgenesh4_pm.C_LG_XVIII000220	acyl-ACP thioesterase (EC-3.1.2.14) (409 aa)						•			0.899

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	202
PLN00179	390	PLN00179, PLN00179, acyl- [acyl-carrier protein] d	1e-113
pfam03405	330	pfam03405, FA_desaturase_2, Fatty acid desaturase	1e-94
cd01050	297	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferr	5e-72

>gnl|CDD|215091 PLN00179, PLN00179, acyl- [acyl-carrier protein] desaturase

 Score =  327 bits (839), Expect = e-113
 Identities = 124/199 (62%), Positives = 145/199 (72%), Gaps = 6/199 (3%)

Query: 8   VTSTKRPAACSPLVPNPAHHRLTAASSTVRFRQISAVAAPPKP----KTHSMPPEKVEVF 63
           + +   P   + L P  +    +++    R        APP+      THSMPPEK+E+F
Sbjct: 6   LAAQPSPPPAARLRPRRSTRSSSSSVVAARVEAAKKPFAPPREVHVQVTHSMPPEKLEIF 65

Query: 64  KSLETWATNNVLPLLKPVEKCWQPQDFLPDPTLPFSDFTDQVRALRERTAGLPDDYFVVL 123
           KSLE WA  N+LPLLKPVEK WQPQDFLPDP      F DQV+ LRER A LPDDYFVVL
Sbjct: 66  KSLEGWAEENLLPLLKPVEKSWQPQDFLPDPASE--GFYDQVKELRERAAELPDDYFVVL 123

Query: 124 VGDMITEDAIPTYQTMINTLDGVRDETGASSSPWAIWNRSWTAEENRHGDLLRSFLYLSG 183
           VGDMITE+A+PTYQTM+NTLDGVRDETGAS++PWA W R+WTAEENRHGDLL  +LYLSG
Sbjct: 124 VGDMITEEALPTYQTMLNTLDGVRDETGASATPWARWTRAWTAEENRHGDLLNKYLYLSG 183

Query: 184 RVDMLMIEKTVQYLISAGM 202
           RVDM  IEKT+QYLI +GM
Sbjct: 184 RVDMRQIEKTIQYLIGSGM 202

Length = 390

>gnl|CDD|217538 pfam03405, FA_desaturase_2, Fatty acid desaturase

 Score =  278 bits (713), Expect = 1e-94
 Identities = 112/147 (76%), Positives = 126/147 (85%), Gaps = 2/147 (1%)

Query: 56  PPEKVEVFKSLETWATNNVLPLLKPVEKCWQPQDFLPDPTLPFSDFTDQVRALRERTAGL 115
           PPEK+E+FKSLE WA  N+LP LKPVEK WQPQDFLPDP+     F +QV+ LRERT  L
Sbjct: 1   PPEKIEIFKSLEGWAEKNILPHLKPVEKSWQPQDFLPDPSS--DGFYEQVKELRERTKEL 58

Query: 116 PDDYFVVLVGDMITEDAIPTYQTMINTLDGVRDETGASSSPWAIWNRSWTAEENRHGDLL 175
           PD+YFVVLVGDMITE+A+PTYQTMINTLDGVRDETGAS +PWAIW R+WTAEENRHGDLL
Sbjct: 59  PDEYFVVLVGDMITEEALPTYQTMINTLDGVRDETGASPTPWAIWTRAWTAEENRHGDLL 118

Query: 176 RSFLYLSGRVDMLMIEKTVQYLISAGM 202
             +LYLSGRVDM  IEKT+QYLI +GM
Sbjct: 119 NKYLYLSGRVDMRQIEKTIQYLIGSGM 145

Length = 330

>gnl|CDD|153109 cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain

 Score =  219 bits (561), Expect = 5e-72
 Identities = 80/145 (55%), Positives = 99/145 (68%), Gaps = 5/145 (3%)

Query: 58  EKVEVFKSLETWATNNVLPLLKPVEKCWQPQDFLPDPTLPFSDFTDQVRALRERTAGLPD 117
            K+E+ +SLE     N+L  LKPVEK WQP DFLPD      DF   V+ LRER A LPD
Sbjct: 1   TKLELLRSLEPVVEENLLNRLKPVEKDWQPHDFLPDSASE--DFDLDVKELRERAAELPD 58

Query: 118 DYFVVLVGDMITEDAIPTYQTMINTLDGVRDETGASSSPWAIWNRSWTAEENRHGDLLRS 177
           D  V LVG+++TE+A+PTY +M+N L G+ DE   S + WA W R WTAEENRHGDLL  
Sbjct: 59  DARVALVGNLLTEEALPTYHSMLNRLFGLDDE---SPTAWARWVRRWTAEENRHGDLLNK 115

Query: 178 FLYLSGRVDMLMIEKTVQYLISAGM 202
           +LYL+GRVD   +E+T QYLI +G 
Sbjct: 116 YLYLTGRVDPRALERTRQYLIGSGF 140

Acyl-Acyl Carrier Protein Desaturase (Acyl_ACP_Desat) is a mu-oxo-bridged diiron-carboxylate enzyme, which belongs to a broad superfamily of ferritin-like proteins and catalyzes the NADPH and O2-dependent formation of a cis-double bond in acyl-ACPs. Acyl-ACP desaturases are found in higher plants and a few bacterial species (Mycobacterium tuberculosis, M. leprae, M. avium and Streptomyces avermitilis, S. coelicolor). In plants, Acyl-ACP desaturase is a plastid-localized, covalently ACP linked, soluble desaturase that introduces the first double bound into saturated fatty acids, resulting in the corresponding monounsaturated fatty acid. Members of this class of soluble desaturases are specific for a particular substrate chain length and introduce the double bond between specific carbon atoms. For example, delta 9 stearoyl-ACP is specific for stearic acid and introduces a double bond between carbon 9 and 10 to yield oleic acid in the ACP-bound form. The enzymatic reaction requires molecular oxygen, NAD(P)H, NAD(P)H ferredoxin oxido-reductase and ferredoxin. The enzyme is active in the homodimeric form; the monomer consists mainly of alpha-helices with the catalytic diiron center buried within a four-helix bundle. Integral membrane fatty acid desaturases that introduce double bonds into fatty acid chains, acyl-CoA desaturases of animals, yeasts, and fungi, and acyl-lipid desaturases of cyanobacteria and higher plants, are distinct from soluble acyl-ACP desaturases, lack diiron centers, and are not included in this CD. Length = 297

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	202
PLN00179	390	acyl- [acyl-carrier protein] desaturase	100.0
PF03405	330	FA_desaturase_2: Fatty acid desaturase; InterPro:	100.0
cd01050	297	Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like	100.0

>PLN00179 acyl- [acyl-carrier protein] desaturase

Probab=100.00  E-value=1.7e-73  Score=521.58  Aligned_cols=159  Identities=75%  Similarity=1.263  Sum_probs=153.5

Q ss_pred             ccccCCCC----CCCCCCChhHHHHHHHhHHHHHhhhhhccccccccCCCCCCCCCCCCCCCchhhhhhhccccccCCCc
Q 037659           42 SAVAAPPK----PKTHSMPPEKVEVFKSLETWATNNVLPLLKPVEKCWQPQDFLPDPTLPFSDFTDQVRALRERTAGLPD  117 (202)
Q Consensus        42 ~~~~~~~~----~~~~~~~~~k~Evl~~LE~~ve~~l~~hLkpve~~WqPhDfLP~~~~~f~~F~~~v~elre~a~~Lpd  117 (202)
                      ++++.+++    +++|+|+|+|+|||++||+||++||++||+|+|++|||||||||+++  +||.++|++||+++++|||
T Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~evl~~LE~~ve~~l~~hL~pvek~WqPhDflP~~~~--~~F~~~v~~lr~~~~~Lpd  117 (390)
T PLN00179         40 KKPFAPPREVHVQVTHSMPPEKLEIFKSLEGWAEENLLPLLKPVEKSWQPQDFLPDPAS--EGFYDQVKELRERAAELPD  117 (390)
T ss_pred             cccCCCchhhhcccccCCCHHHHHHHHHHHHHHHHHHHHHhchHhhccCccccCCCCcc--CChHHHHhhhhHhhcCCCh
Confidence            34455443    89999999999999999999999999999999999999999999999  8999999999999999999


Q ss_pred             ceeeeeeeeccccCCcchhhHhhhhhcCCcCCCCCCCCCccccccccchhhhhhhhhcccceeecCCcChhHHHHHHHHH
Q 037659          118 DYFVVLVGDMITEDAIPTYQTMINTLDGVRDETGASSSPWAIWNRSWTAEENRHGDLLRSFLYLSGRVDMLMIEKTVQYL  197 (202)
Q Consensus       118 ~~~vaLVgnmITEEaLPtY~~~l~~~~gv~d~tg~s~~~W~~Wvr~WTAEENRHGdlLn~YLylSgrVDm~~lE~t~q~L  197 (202)
                      +++|||||||||||||||||||||++|||+|+||+++++|++|+|+||||||||||+|||||||||+|||+++|+++|||
T Consensus       118 ~~~v~LvgdmiTEeaLPtY~~~Ln~~~gv~d~tg~~~~~W~~Wvr~WTAEENRHgdlL~~YLylTgrVDm~~iE~t~q~l  197 (390)
T PLN00179        118 DYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASATPWARWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYL  197 (390)
T ss_pred             hhhhhhhhcchhhhcchHHHHHHHHhcccccccCCCCCchhhhccccccccchHHHHHHHHHhhccCcCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCC
Q 037659          198 ISAGM  202 (202)
Q Consensus       198 I~~G~  202 (202)
                      |++||
T Consensus       198 i~~G~  202 (390)
T PLN00179        198 IGSGM  202 (390)
T ss_pred             HhcCC
Confidence            99998

>PF03405 FA_desaturase_2: Fatty acid desaturase; InterPro: IPR005067 Fatty acid desaturases are enzymes that catalyze the insertion of a double bond at the delta position of fatty acids

Probab=100.00  E-value=2e-63  Score=448.56  Aligned_cols=145  Identities=54%  Similarity=0.901  Sum_probs=130.9

Q ss_pred             ChhHHHHHHHhHHHHHhhhhhccccccccCCCCCCCCCCCCCCCchhhhhhhccccccCCCcceeeeeeeeccccCCcch
Q 037659           56 PPEKVEVFKSLETWATNNVLPLLKPVEKCWQPQDFLPDPTLPFSDFTDQVRALRERTAGLPDDYFVVLVGDMITEDAIPT  135 (202)
Q Consensus        56 ~~~k~Evl~~LE~~ve~~l~~hLkpve~~WqPhDfLP~~~~~f~~F~~~v~elre~a~~Lpd~~~vaLVgnmITEEaLPt  135 (202)
                      ||+|+|||++||+||+++|++||+|++++|||||||||++|  +||++++++||++|++|||++++||||||||||||||
T Consensus         1 ~~~~~evl~~Le~~v~~~~~~~l~~~~~~W~PhD~lP~~~~--~~F~~~~~~w~~~~~~Lpd~~~~alv~~llTEd~LPs   78 (330)
T PF03405_consen    1 PPEKLEVLRELEPVVEENLLRHLKPVEKDWQPHDFLPWSEG--RNFFLGGKDWRPSQSTLPDDARVALVGNLLTEDNLPS   78 (330)
T ss_dssp             -GGGHHHHHHCHHHHHHHCHHHCH-CGGS--GGGGS-GCCS--TTHHHCCHHHHHHHHTS-HHHHHHHHHHHHHHHTHHH
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHhHHhhCCCccccCCCCcc--ccHhHhcccCCHhhccCCHHHHHHHHHHHHhhhhhhH
Confidence            58999999999999999999999999999999999999999  8999999999999999999999999999999999999


Q ss_pred             hhHhhhhhcCCcCCCCCCCCCccccccccchhhhhhhhhcccceeecCCcChhHHHHHHHHHHhcCC
Q 037659          136 YQTMINTLDGVRDETGASSSPWAIWNRSWTAEENRHGDLLRSFLYLSGRVDMLMIEKTVQYLISAGM  202 (202)
Q Consensus       136 Y~~~l~~~~gv~d~tg~s~~~W~~Wvr~WTAEENRHGdlLn~YLylSgrVDm~~lE~t~q~LI~~G~  202 (202)
                      ||++||++||++|++|+++++|++|+++||||||||||+||+|||+||+|||+++|++++++|.+||
T Consensus        79 Y~~~l~~~~~~~~~~ga~~~~W~~wv~~WTAEEnRHg~~L~~YL~vsg~vDp~~lE~~r~~~i~~G~  145 (330)
T PF03405_consen   79 YHRELATLFGVRDEDGASDSPWGRWVGRWTAEENRHGDALRDYLYVSGRVDPVALERTRMYLITAGF  145 (330)
T ss_dssp             HHHHHTTSTTT--SSSS--SHHHHHHHHHHHHHHHHHHHHHHHHHHCTSS-CCCCCHCCHHHHHH--
T ss_pred             HHHHHHhhcCccccCCCCCCcHHHHcccccccccccHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999997

There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: - Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: - Bacterial fatty acid desaturases. - Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. - Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 2. ; GO: 0045300 acyl-[acyl-carrier-protein] desaturase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 1OQ7_B 1AFR_A 2XZ0_B 1OQB_A 2J2F_E 1OQ4_B 1OQ9_A 2XZ1_A 1ZA0_A.

>cd01050 Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like diiron-binding domain

Probab=100.00  E-value=1.4e-54  Score=386.13  Aligned_cols=140  Identities=57%  Similarity=0.976  Sum_probs=135.1

Q ss_pred             hHHHHHHHhHHHHHhhhhhccccccccCCCCCCCCCCCCCCCchhhhhhhccccccCCCcceeeeeeeeccccCCcchhh
Q 037659           58 EKVEVFKSLETWATNNVLPLLKPVEKCWQPQDFLPDPTLPFSDFTDQVRALRERTAGLPDDYFVVLVGDMITEDAIPTYQ  137 (202)
Q Consensus        58 ~k~Evl~~LE~~ve~~l~~hLkpve~~WqPhDfLP~~~~~f~~F~~~v~elre~a~~Lpd~~~vaLVgnmITEEaLPtY~  137 (202)
                      .|+|||++|||||+++++++|+|++++|||||||||+++  +||+.++++||++|++|||++++||+||||||||||+||
T Consensus         1 ~~~el~~~le~~~~~~~~~~~~~~~~~W~p~d~lP~~~~--~~f~~~~~~~~~~~~~L~~~~~~~l~~~~itEd~LP~Y~   78 (297)
T cd01050           1 TKLELLRSLEPVVEENLLNRLKPVEKDWQPHDFLPDSAS--EDFDLDVKELRERAAELPDDARVALVGNLLTEEALPTYH   78 (297)
T ss_pred             ChhHHHHHHHHHHHHHHHHhcccHhhccCCcccCCCCCC--CChhhccccCchhhccCCHHHHHHHHHHHHHhhccHHHH
Confidence            478999999999999998888999999999999999999  889889999999999999999999999999999999999


Q ss_pred             HhhhhhcCCcCCCCCCCCCccccccccchhhhhhhhhcccceeecCCcChhHHHHHHHHHHhcCC
Q 037659          138 TMINTLDGVRDETGASSSPWAIWNRSWTAEENRHGDLLRSFLYLSGRVDMLMIEKTVQYLISAGM  202 (202)
Q Consensus       138 ~~l~~~~gv~d~tg~s~~~W~~Wvr~WTAEENRHGdlLn~YLylSgrVDm~~lE~t~q~LI~~G~  202 (202)
                      ++||++||++|+   ++++|++|+++|||||||||++||+|||+||+|||+++|++++++|+.||
T Consensus        79 ~~L~~~f~~~~~---~~~~w~~w~~~WtaEE~rHg~aL~~YL~~sg~vdp~~le~~~~~~~~~G~  140 (297)
T cd01050          79 SMLNRLFGLDDE---SPTAWARWVRRWTAEENRHGDLLNKYLYLTGRVDPRALERTRQYLIGSGF  140 (297)
T ss_pred             HHHHHHcCcccc---cccHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC
Confidence            999999998775   67899999999999999999999999999999999999999999999997

Acyl-Acyl Carrier Protein Desaturase (Acyl_ACP_Desat) is a mu-oxo-bridged diiron-carboxylate enzyme, which belongs to a broad superfamily of ferritin-like proteins and catalyzes the NADPH and O2-dependent formation of a cis-double bond in acyl-ACPs. Acyl-ACP desaturases are found in higher plants and a few bacterial species (Mycobacterium tuberculosis, M. leprae, M. avium and Streptomyces avermitilis, S. coelicolor). In plants, Acyl-ACP desaturase is a plastid-localized, covalently ACP linked, soluble desaturase that introduces the first double bound into saturated fatty acids, resulting in the corresponding monounsaturated fatty acid. Members of this class of soluble desaturases are specific for a particular substrate chain length and introduce the double bond between specific carbon atoms. For example, delta 9 stearoyl-ACP is specific for stearic acid and introduces a double bond between carbon 9 and 1

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	202
1oq4_A	363	The Crystal Structure Of The Complex Between Stearo		5e-66
2j2f_A	363	The T199d Mutant Of Stearoyl Acyl Carrier Protein D		5e-66
1afr_A	345	Stearoyl-Acyl Carrier Protein Desaturase From Casto		8e-66
2uw1_A	338	Ivy Desaturase Structure Length = 338		6e-61
2uw1_B	338	Ivy Desaturase Structure Length = 338		9e-61

>pdb|1OQ4|A Chain A, The Crystal Structure Of The Complex Between Stearoyl Acyl Carrier Protein Desaturase From Ricinus Communis (Castor Bean) And Azide. Length = 363

Iteration: 1
 Score =  246 bits (629), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 114/152 (75%), Positives = 129/152 (84%), Gaps = 4/152 (2%)
Query: 52  THSMPPEKVEVFKSLETWATNNVLPLLKPVEKCWQPQDFLPDPTLPFSD-FTDQVRALRE 110
           THSMPP+K+E+FKSL+ WA  N+L  LKPVEKCWQPQDFLPDP    SD F +QVR LRE
Sbjct: 29  THSMPPQKIEIFKSLDNWAEENILVHLKPVEKCWQPQDFLPDPA---SDGFDEQVRELRE 85
Query: 111 RTAGLPDDYFVVLVGDMITEDAIPTYQTMINTLDGVRDETGASSSPWAIWNRSWTAEENR 170
           R   +PDDYFVVLVGDMITE+A+PTYQTM+NTLDGVRDETGAS + WAIW R+WTAEENR
Sbjct: 86  RAKEIPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASPTSWAIWTRAWTAEENR 145
Query: 171 HGDLLRSFLYLSGRVDMLMIEKTVQYLISAGM 202
           HGDLL  +LYLSGRVDM  IEKT+QYLI +GM
Sbjct: 146 HGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGM 177

>pdb|2J2F|A Chain A, The T199d Mutant Of Stearoyl Acyl Carrier Protein Desaturase From Ricinus Communis (Castor Bean) Length = 363

Iteration: 1
 Score =  246 bits (629), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 114/152 (75%), Positives = 129/152 (84%), Gaps = 4/152 (2%)
Query: 52  THSMPPEKVEVFKSLETWATNNVLPLLKPVEKCWQPQDFLPDPTLPFSD-FTDQVRALRE 110
           THSMPP+K+E+FKSL+ WA  N+L  LKPVEKCWQPQDFLPDP    SD F +QVR LRE
Sbjct: 29  THSMPPQKIEIFKSLDNWAEENILVHLKPVEKCWQPQDFLPDPA---SDGFDEQVRELRE 85
Query: 111 RTAGLPDDYFVVLVGDMITEDAIPTYQTMINTLDGVRDETGASSSPWAIWNRSWTAEENR 170
           R   +PDDYFVVLVGDMITE+A+PTYQTM+NTLDGVRDETGAS + WAIW R+WTAEENR
Sbjct: 86  RAKEIPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASPTSWAIWTRAWTAEENR 145
Query: 171 HGDLLRSFLYLSGRVDMLMIEKTVQYLISAGM 202
           HGDLL  +LYLSGRVDM  IEKT+QYLI +GM
Sbjct: 146 HGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGM 177

>pdb|1AFR|A Chain A, Stearoyl-Acyl Carrier Protein Desaturase From Castor Seeds Length = 345

Iteration: 1
 Score =  246 bits (627), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 114/152 (75%), Positives = 129/152 (84%), Gaps = 4/152 (2%)
Query: 52  THSMPPEKVEVFKSLETWATNNVLPLLKPVEKCWQPQDFLPDPTLPFSD-FTDQVRALRE 110
           THSMPP+K+E+FKSL+ WA  N+L  LKPVEKCWQPQDFLPDP    SD F +QVR LRE
Sbjct: 11  THSMPPQKIEIFKSLDNWAEENILVHLKPVEKCWQPQDFLPDPA---SDGFDEQVRELRE 67
Query: 111 RTAGLPDDYFVVLVGDMITEDAIPTYQTMINTLDGVRDETGASSSPWAIWNRSWTAEENR 170
           R   +PDDYFVVLVGDMITE+A+PTYQTM+NTLDGVRDETGAS + WAIW R+WTAEENR
Sbjct: 68  RAKEIPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASPTSWAIWTRAWTAEENR 127
Query: 171 HGDLLRSFLYLSGRVDMLMIEKTVQYLISAGM 202
           HGDLL  +LYLSGRVDM  IEKT+QYLI +GM
Sbjct: 128 HGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGM 159

>pdb|2UW1|A Chain A, Ivy Desaturase Structure Length = 338

Iteration: 1
 Score =  229 bits (585), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 106/152 (69%), Positives = 124/152 (81%), Gaps = 4/152 (2%)
Query: 52  THSMPPEKVEVFKSLETWATNNVLPLLKPVEKCWQPQDFLPDPTLPFSD-FTDQVRALRE 110
           THSMPP+K+E+FKSL+ WA NNVL  LK VEK WQPQD+LPDP    SD F +QVR LRE
Sbjct: 4   THSMPPQKLEIFKSLDDWARNNVLIHLKSVEKSWQPQDYLPDPV---SDGFEEQVRELRE 60
Query: 111 RTAGLPDDYFVVLVGDMITEDAIPTYQTMINTLDGVRDETGASSSPWAIWNRSWTAEENR 170
           R   +PDDYFVVLVGDMITE+A+PTY +M+N  DG++DETGA  S WA+W R+WTAEENR
Sbjct: 61  RAKEIPDDYFVVLVGDMITEEALPTYMSMLNRCDGIKDETGAEPSAWAMWTRAWTAEENR 120
Query: 171 HGDLLRSFLYLSGRVDMLMIEKTVQYLISAGM 202
           HGDLL  +LYLSGRVDM  IEKT+QYLI +GM
Sbjct: 121 HGDLLNKYLYLSGRVDMRKIEKTIQYLIGSGM 152

>pdb|2UW1|B Chain B, Ivy Desaturase Structure Length = 338

Iteration: 1
 Score =  229 bits (583), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 106/152 (69%), Positives = 124/152 (81%), Gaps = 4/152 (2%)
Query: 52  THSMPPEKVEVFKSLETWATNNVLPLLKPVEKCWQPQDFLPDPTLPFSD-FTDQVRALRE 110
           THSMPP+K+E+FKSL+ WA NNVL  LK VEK WQPQD+LPDP    SD F +QVR LRE
Sbjct: 4   THSMPPQKLEIFKSLDDWARNNVLIHLKSVEKSWQPQDYLPDPV---SDGFEEQVRELRE 60
Query: 111 RTAGLPDDYFVVLVGDMITEDAIPTYQTMINTLDGVRDETGASSSPWAIWNRSWTAEENR 170
           R   +PDDYFVVLVGDMITE+A+PTY +M+N  DG++DETGA  S WA+W R+WTAEENR
Sbjct: 61  RAKEIPDDYFVVLVGDMITEEALPTYMSMLNRCDGIKDETGAEPSAWAMWTRAWTAEENR 120
Query: 171 HGDLLRSFLYLSGRVDMLMIEKTVQYLISAGM 202
           HGDLL  +LYLSGRVDM  IEKT+QYLI +GM
Sbjct: 121 HGDLLNKYLYLSGRVDMRKIEKTIQYLIGSGM 152

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	202
2uw1_A	338	Desaturase, plastid delta4 multifunctional acyl-AC	1e-62
1za0_A	275	Possible acyl-[acyl-carrier protein] desaturase D	3e-53

>2uw1_A Desaturase, plastid delta4 multifunctional acyl-ACYL carrier desaturase; electron transfer, oxidoreductase, lipid synthesis, fatty AC biosynthesis; HET: GVM; 1.95A {Hedera helix} PDB: 2uw1_B* 1oq4_A 1oq7_A 1oq9_A 1oqb_A 2xz0_A* 2xz1_A* 1afr_A 2j2f_A Length = 338

 Score =  196 bits (499), Expect = 1e-62
 Identities = 104/151 (68%), Positives = 122/151 (80%), Gaps = 2/151 (1%)

Query: 52  THSMPPEKVEVFKSLETWATNNVLPLLKPVEKCWQPQDFLPDPTLPFSDFTDQVRALRER 111
           THSMPP+K+E+FKSL+ WA NNVL  LK VEK WQPQD+LPDP      F +QVR LRER
Sbjct: 4   THSMPPQKLEIFKSLDDWARNNVLIHLKSVEKSWQPQDYLPDPV--SDGFEEQVRELRER 61

Query: 112 TAGLPDDYFVVLVGDMITEDAIPTYQTMINTLDGVRDETGASSSPWAIWNRSWTAEENRH 171
              +PDDYFVVLVGDMITE+A+PTY +M+N  DG++DETGA  S WA+W R+WTAEENRH
Sbjct: 62  AKEIPDDYFVVLVGDMITEEALPTYMSMLNRCDGIKDETGAEPSAWAMWTRAWTAEENRH 121

Query: 172 GDLLRSFLYLSGRVDMLMIEKTVQYLISAGM 202
           GDLL  +LYLSGRVDM  IEKT+QYLI +GM
Sbjct: 122 GDLLNKYLYLSGRVDMRKIEKTIQYLIGSGM 152

>1za0_A Possible acyl-[acyl-carrier protein] desaturase D (acyl-[ACP] desaturase) (stearoyl-ACP...; four-helix bundle, metal binding protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.25.1.2 Length = 275

 Score =  170 bits (432), Expect = 3e-53
 Identities = 30/149 (20%), Positives = 49/149 (32%), Gaps = 9/149 (6%)

Query: 54  SMPPEKVEVFKSLETWATNNVLPLLKPVEKCWQPQDFLPDPTLPFSDFTDQVRALRERTA 113
           +  P    +   LE     N+   L   E  W   D++P      +      R      +
Sbjct: 2   AQKPVADALTLELEPVVEANMTRHL-DTEDIWFAHDYVPFDQ-GENFAFLGGRDWDPSQS 59

Query: 114 GLPDDYFVVLVGDMITEDAIPTYQTMINTLDGVRDETGASSSPWAIWNRSWTAEENRHGD 173
            LP          +I +D +  +   +     + D        W  W   WTAEE+ H  
Sbjct: 60  TLPRTITDACEILLILKDNLAGHHRELVEHFILEDW-------WGRWLGRWTAEEHLHAI 112

Query: 174 LLRSFLYLSGRVDMLMIEKTVQYLISAGM 202
            LR +L ++  VD +  E      +  G 
Sbjct: 113 ALREYLVVTREVDPVANEDVRVQHVMKGY 141

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	202
2uw1_A	338	Desaturase, plastid delta4 multifunctional acyl-AC	100.0
1za0_A	275	Possible acyl-[acyl-carrier protein] desaturase D	100.0

>2uw1_A Desaturase, plastid delta4 multifunctional acyl-ACYL carrier desaturase; electron transfer, oxidoreductase, lipid synthesis, fatty AC biosynthesis; HET: GVM; 1.95A {Hedera helix} PDB: 2uw1_B* 1oq4_A 1oq7_A 1oq9_A 1oqb_A 2xz0_A* 2xz1_A* 1afr_A 2j2f_A

Probab=100.00  E-value=3.5e-64  Score=453.36  Aligned_cols=151  Identities=69%  Similarity=1.196  Sum_probs=140.0

Q ss_pred             CCCCCCChhHHHHHHHhHHHHHhhhhhccccccccCCCCCCCCCCCCCCCchhhhhhhccccccCCCcceeeeeeeeccc
Q 037659           50 PKTHSMPPEKVEVFKSLETWATNNVLPLLKPVEKCWQPQDFLPDPTLPFSDFTDQVRALRERTAGLPDDYFVVLVGDMIT  129 (202)
Q Consensus        50 ~~~~~~~~~k~Evl~~LE~~ve~~l~~hLkpve~~WqPhDfLP~~~~~f~~F~~~v~elre~a~~Lpd~~~vaLVgnmIT  129 (202)
                      |++|+|+++|+|||++||+||+++|++||+|++++|||||||||++|  +||.++|++|||+|++|||++++||||||||
T Consensus         2 ~~~~~~~~~~~e~~~~Le~~~~~~~~~hL~p~~~~Wqp~D~lPw~~~--~~F~~~~~~~~~~~~~l~d~~~v~lv~~~iT   79 (338)
T 2uw1_A            2 QVTHSMPPQKLEIFKSLDDWARNNVLIHLKSVEKSWQPQDYLPDPVS--DGFEEQVRELRERAKEIPDDYFVVLVGDMIT   79 (338)
T ss_dssp             ----------CHHHHHTHHHHHHHTGGGSCCGGGCCCGGGGSCCTTS--TTHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred             cccccCCHHHHHHHHHHHHHHHHHHHHHhhhHhhcCCchhcCCCccc--cchhhhcccccHhhccCCHHHHHHHHHHHHh
Confidence            67999999999999999999999999999999999999999999999  9999999999999999999999999999999


Q ss_pred             cCCcchhhHhhhhhcCCcCCCCCCCCCccccccccchhhhhhhhhcccceeecCCcChhHHHHHHHHHHhcCC
Q 037659          130 EDAIPTYQTMINTLDGVRDETGASSSPWAIWNRSWTAEENRHGDLLRSFLYLSGRVDMLMIEKTVQYLISAGM  202 (202)
Q Consensus       130 EEaLPtY~~~l~~~~gv~d~tg~s~~~W~~Wvr~WTAEENRHGdlLn~YLylSgrVDm~~lE~t~q~LI~~G~  202 (202)
                      ||||||||++||++||++|++|+|+++|++|+++||||||||||+||+||||||+|||+++|+++||+|.+||
T Consensus        80 Ed~LPtY~~~L~~~fgvrd~~g~~~~~w~~w~~~WtaEEnrHg~aL~~YL~lsgrvDp~~lE~~~~~~i~~Gf  152 (338)
T 2uw1_A           80 EEALPTYMSMLNRCDGIKDETGAEPSAWAMWTRAWTAEENRHGDLLNKYLYLSGRVDMRKIEKTIQYLIGSGM  152 (338)
T ss_dssp             HHTHHHHHHHHTTSTTTSCSSSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHHCC
T ss_pred             hhcchHHHHHHHHHcCcccccCCCcchHHHHhhhHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999998

>1za0_A Possible acyl-[acyl-carrier protein] desaturase D (acyl-[ACP] desaturase) (stearoyl-ACP...; four-helix bundle, metal binding protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.25.1.2

Probab=100.00  E-value=8.3e-56  Score=389.26  Aligned_cols=137  Identities=22%  Similarity=0.264  Sum_probs=109.0

Q ss_pred             ChhHHHHHHHhHHHHHhhhhhccccccccCCCCCCCCCCCCCCCchhh-hhhhccccccCCCcceeeeeeeeccccCCcc
Q 037659           56 PPEKVEVFKSLETWATNNVLPLLKPVEKCWQPQDFLPDPTLPFSDFTD-QVRALRERTAGLPDDYFVVLVGDMITEDAIP  134 (202)
Q Consensus        56 ~~~k~Evl~~LE~~ve~~l~~hLkpve~~WqPhDfLP~~~~~f~~F~~-~v~elre~a~~Lpd~~~vaLVgnmITEEaLP  134 (202)
                      +++|+|||++||+||++++++||| ++++|||||||||+++  ++|.+ +|++|||++++|||++++||+||||||||||
T Consensus         4 ~~~~~e~~~~le~~~~~~~~~~l~-~~~~W~p~d~lPw~~~--~~F~~~~~~~~~~~~~~L~d~~~~~l~~~~itEd~LP   80 (275)
T 1za0_A            4 KPVADALTLELEPVVEANMTRHLD-TEDIWFAHDYVPFDQG--ENFAFLGGRDWDPSQSTLPRTITDACEILLILKDNLA   80 (275)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHH-TCCCCCGGGGCCGGGC--CCCGGGTSCCCCGGGCCSCHHHHHHHHHHHHHHHC--
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhh-hhccCChhhcCCCccc--ccchhcccccccHhhccCCHHHHHHHHHHHHHhhcch
Confidence            578999999999999999999999 9999999999999999  78877 8999999999999999999999999999999


Q ss_pred             hhhHhhhhhcCCcCCCCCCCCCccccccccchhhhhhhhhcccceeecCCcChhHHHHHHHHHHhcCC
Q 037659          135 TYQTMINTLDGVRDETGASSSPWAIWNRSWTAEENRHGDLLRSFLYLSGRVDMLMIEKTVQYLISAGM  202 (202)
Q Consensus       135 tY~~~l~~~~gv~d~tg~s~~~W~~Wvr~WTAEENRHGdlLn~YLylSgrVDm~~lE~t~q~LI~~G~  202 (202)
                      +||++||++||.       +++|++|+++|||||||||++||+|||+||+|||+++|++++++|++||
T Consensus        81 ~Y~~~L~~~~~~-------d~~w~~w~~~WtaEE~rHg~aL~~YL~~sg~vdp~~lE~~~~~~i~~g~  141 (275)
T 1za0_A           81 GHHRELVEHFIL-------EDWWGRWLGRWTAEEHLHAIALREYLVVTREVDPVANEDVRVQHVMKGY  141 (275)
T ss_dssp             --------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCTTTTTCTTC-------
T ss_pred             HHHHHHHHhcCC-------CchHHHHhhhHhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhcCC
Confidence            999999999995       3689999999999999999999999999999999999999999999997

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	202
d1afra_	345	a.25.1.2 (A:) delta 9-stearoyl-acyl carrier protei	1e-74
d1za0a1	267	a.25.1.2 (A:8-274) Possible acyl-[acyl-carrier pro	3e-47

>d1afra_ a.25.1.2 (A:) delta 9-stearoyl-acyl carrier protein desaturase {Castor bean (Ricinus communis) [TaxId: 3988]} Length = 345

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ribonucleotide reductase-like
domain: delta 9-stearoyl-acyl carrier protein desaturase
species: Castor bean (Ricinus communis) [TaxId: 3988]

 Score =  226 bits (578), Expect = 1e-74
 Identities = 112/151 (74%), Positives = 127/151 (84%), Gaps = 2/151 (1%)

Query: 52  THSMPPEKVEVFKSLETWATNNVLPLLKPVEKCWQPQDFLPDPTLPFSDFTDQVRALRER 111
           THSMPP+K+E+FKSL+ WA  N+L  LKPVEKCWQPQDFLPDP      F +QVR LRER
Sbjct: 11  THSMPPQKIEIFKSLDNWAEENILVHLKPVEKCWQPQDFLPDPASD--GFDEQVRELRER 68

Query: 112 TAGLPDDYFVVLVGDMITEDAIPTYQTMINTLDGVRDETGASSSPWAIWNRSWTAEENRH 171
              +PDDYFVVLVGDMITE+A+PTYQTM+NTLDGVRDETGAS + WAIW R+WTAEENRH
Sbjct: 69  AKEIPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASPTSWAIWTRAWTAEENRH 128

Query: 172 GDLLRSFLYLSGRVDMLMIEKTVQYLISAGM 202
           GDLL  +LYLSGRVDM  IEKT+QYLI +GM
Sbjct: 129 GDLLNKYLYLSGRVDMRQIEKTIQYLIGSGM 159

>d1za0a1 a.25.1.2 (A:8-274) Possible acyl-[acyl-carrier protein] desaturase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 267

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ribonucleotide reductase-like
domain: Possible acyl-[acyl-carrier protein] desaturase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  154 bits (390), Expect = 3e-47
 Identities = 29/137 (21%), Positives = 46/137 (33%), Gaps = 9/137 (6%)

Query: 66  LETWATNNVLPLLKPVEKCWQPQDFLPDPTLPFSDFTDQVRALRERTAGLPDDYFVVLVG 125
           LE     N+   L   E  W   D++P      +      R      + LP         
Sbjct: 7   LEPVVEANMTRHLD-TEDIWFAHDYVPFDQGE-NFAFLGGRDWDPSQSTLPRTITDACEI 64

Query: 126 DMITEDAIPTYQTMINTLDGVRDETGASSSPWAIWNRSWTAEENRHGDLLRSFLYLSGRV 185
            +I +D +  +   +     + D        W  W   WTAEE+ H   LR +L ++  V
Sbjct: 65  LLILKDNLAGHHRELVEHFILED-------WWGRWLGRWTAEEHLHAIALREYLVVTREV 117

Query: 186 DMLMIEKTVQYLISAGM 202
           D +  E      +  G 
Sbjct: 118 DPVANEDVRVQHVMKGY 134

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	202
d1afra_	345	delta 9-stearoyl-acyl carrier protein desaturase {	100.0
d1za0a1	267	Possible acyl-[acyl-carrier protein] desaturase {M	100.0

>d1afra_ a.25.1.2 (A:) delta 9-stearoyl-acyl carrier protein desaturase {Castor bean (Ricinus communis) [TaxId: 3988]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ribonucleotide reductase-like
domain: delta 9-stearoyl-acyl carrier protein desaturase
species: Castor bean (Ricinus communis) [TaxId: 3988]

Probab=100.00  E-value=8.1e-67  Score=469.50  Aligned_cols=152  Identities=74%  Similarity=1.270  Sum_probs=150.1

Q ss_pred             CCCCCCCChhHHHHHHHhHHHHHhhhhhccccccccCCCCCCCCCCCCCCCchhhhhhhccccccCCCcceeeeeeeecc
Q 037659           49 KPKTHSMPPEKVEVFKSLETWATNNVLPLLKPVEKCWQPQDFLPDPTLPFSDFTDQVRALRERTAGLPDDYFVVLVGDMI  128 (202)
Q Consensus        49 ~~~~~~~~~~k~Evl~~LE~~ve~~l~~hLkpve~~WqPhDfLP~~~~~f~~F~~~v~elre~a~~Lpd~~~vaLVgnmI  128 (202)
                      .|++|+|+|+|+|||++||+||++||++||||++|+|||||||||++|  +||.+++++||+++++|||+++||||||||
T Consensus         8 ~~~~~~~~p~~~ev~~~Le~~ve~~~~~~L~~v~~~WqPhD~lP~~~~--~~F~~~~~e~~~~a~~lpd~~~v~lv~nll   85 (345)
T d1afra_           8 VQVTHSMPPQKIEIFKSLDNWAEENILVHLKPVEKCWQPQDFLPDPAS--DGFDEQVRELRERAKEIPDDYFVVLVGDMI   85 (345)
T ss_dssp             CCCCCCSCTTTHHHHHHTHHHHHHHTGGGSCCGGGSCCGGGGSCCTTS--TTHHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred             hhhhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCcccCCCCcc--CCcchhccccchhhccCCHHHHHHHHHhhh
Confidence            399999999999999999999999999999999999999999999999  899999999999999999999999999999


Q ss_pred             ccCCcchhhHhhhhhcCCcCCCCCCCCCccccccccchhhhhhhhhcccceeecCCcChhHHHHHHHHHHhcCC
Q 037659          129 TEDAIPTYQTMINTLDGVRDETGASSSPWAIWNRSWTAEENRHGDLLRSFLYLSGRVDMLMIEKTVQYLISAGM  202 (202)
Q Consensus       129 TEEaLPtY~~~l~~~~gv~d~tg~s~~~W~~Wvr~WTAEENRHGdlLn~YLylSgrVDm~~lE~t~q~LI~~G~  202 (202)
                      ||||||||||+||++||++|++|+++++|++|+|+||||||||||+||+|||+||+|||+++|++++++|+.||
T Consensus        86 TEd~LPtY~~~l~~~~g~~d~~g~~~~~W~~Wv~~WTAEEnRHg~aLr~YL~vsr~VDp~~lE~~~~~~~~~G~  159 (345)
T d1afra_          86 TEEALPTYQTMLNTLDGVRDETGASPTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGM  159 (345)
T ss_dssp             HHHTHHHHHHHHTTSTTTCCSSSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHCC
T ss_pred             ccccCchHHHHHHHHhccccccCCCCcchhhhccccccccchHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999997

>d1za0a1 a.25.1.2 (A:8-274) Possible acyl-[acyl-carrier protein] desaturase {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ribonucleotide reductase-like
domain: Possible acyl-[acyl-carrier protein] desaturase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=6.2e-55  Score=380.47  Aligned_cols=132  Identities=22%  Similarity=0.264  Sum_probs=105.8

Q ss_pred             HHHHHhHHHHHhhhhhccccccccCCCCCCCCCCCCCCCch-hhhhhhccccccCCCcceeeeeeeeccccCCcchhhHh
Q 037659           61 EVFKSLETWATNNVLPLLKPVEKCWQPQDFLPDPTLPFSDF-TDQVRALRERTAGLPDDYFVVLVGDMITEDAIPTYQTM  139 (202)
Q Consensus        61 Evl~~LE~~ve~~l~~hLkpve~~WqPhDfLP~~~~~f~~F-~~~v~elre~a~~Lpd~~~vaLVgnmITEEaLPtY~~~  139 (202)
                      .++.+|||+|+++|++||+ ++|+|||||||||++|  +|| +.++++|++++++|||++++|||||||||||||+||++
T Consensus         2 ~l~~~le~~~e~~~~~hl~-~~~~W~p~d~lP~~~~--~~f~~~~~~~~~~~~~~l~~~~~~alv~~lltEdnLP~Y~~~   78 (267)
T d1za0a1           2 ALTLELEPVVEANMTRHLD-TEDIWFAHDYVPFDQG--ENFAFLGGRDWDPSQSTLPRTITDACEILLILKDNLAGHHRE   78 (267)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-TCCCCCGGGGCCGGGC--CCCGGGTSCCCCGGGCCSCHHHHHHHHHHHHHHHC-------
T ss_pred             cHHHHhHHHHHHHHHHhhh-hhhccCccccCCCCCC--CCccccCcccCChhhccCchhHHHHHHhhhhcccCCcHHHHH
Confidence            4789999999999999998 9999999999999999  666 46799999999999999999999999999999999999


Q ss_pred             hhhhcCCcCCCCCCCCCccccccccchhhhhhhhhcccceeecCCcChhHHHHHHHHHHhcCC
Q 037659          140 INTLDGVRDETGASSSPWAIWNRSWTAEENRHGDLLRSFLYLSGRVDMLMIEKTVQYLISAGM  202 (202)
Q Consensus       140 l~~~~gv~d~tg~s~~~W~~Wvr~WTAEENRHGdlLn~YLylSgrVDm~~lE~t~q~LI~~G~  202 (202)
                      ||++||+       +++|++|+|+|||||||||++||+|||+||+|||+++|+++++++..||
T Consensus        79 l~~~f~~-------d~~w~~wv~~WtaEEnrHg~aL~~YL~lsg~vDp~~~e~~~~~~~~~G~  134 (267)
T d1za0a1          79 LVEHFIL-------EDWWGRWLGRWTAEEHLHAIALREYLVVTREVDPVANEDVRVQHVMKGY  134 (267)
T ss_dssp             ---------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCTTTTTCTTC-------
T ss_pred             HHHHhcc-------chHHHHHHhcccHHHhhHHHHHHHHHHHhccCChhHhHHHHHHHHHhcc
Confidence            9999996       3599999999999999999999999999999999999999999999987