Citrus Sinensis ID: 037671

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------
Protein Sequence
FLFVFVIPFVCLLRVSSVCKKWKLGVKQSLARRKNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPLDCFIGLLTI
Secondary Structure (PSIPRED)
cEEcccccHHHHHHHHHHcHHHHHHHHHHcccccccccccccccHHHHHHHHHHcccccEEEcccccccccccHHHHHHHHHHcccccccEEEccccccccHHHHHHHHHccccccEEEcccccccHHHHHHHHHccccccEEcccccccccHHHHHHHHHccccccEEccccccccHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccEEcccccHHHHHHHHHHHHHHHHHHcccHcHEHHHHccccccHHHHHHHHHHcccccEEEcccccccccccHHHHHHHHHHHccccccEEEccccccccHHHHHHHHHHcccccEEEccccEEcHHHHHHHHHccccccEEEccccHHccHHHHHHHHHccccccEEEccccccccHHHHHHHcc
Coil and Loop (DISEMBL)
FLFVFVIPFVCLLRVSSVCKKWKLGVKQSLARRKNLsfagwkmdddstaRLVGYAYSLKELEISrsrwgcqitdnglYRMSFAKCISNLTSISlwgltgitdkGVVQLISRASSlqhlniggtfitdeSLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKcgrlesinvwgtrlpldcfigllti
Flexible Loop (DISEMBL)
flfvfvipFVCLLRVSSVckkwklgvkqslarrknlsfagwkmdddstARLVGYAYSLKeleisrsrwGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLesinvwgtrlplDCFIGLLTI
Low Complexity Region (SEG)
FLFVFVIPFVCLLRVSSVCKKWKLGVKQSLARRKNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPLDCFIGLLTI
Disordered region (IsUnstruct)
*LFVFVIPFVCLLRVSSVCKKWKLGVKQSLARRKNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPLDCFIGLL**
Disordered Region (DISOPRED)
FLFVFVIPFVCLLRVSSVCKKWKLGVKQSLARRKNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPLDCFIGLLTI
Disordered Region (DISEMBL)
FLFVFVIPFVCLLRVSSVCKKWKLGVKQSLARRKNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPLDCFIGLLTI
Disordered Region (DISPRO)
FLFVFVIPFVCLLRVSSVCKKWKLGVKQSLARRKNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPLDCFIGLLTI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
FLFVFVIPFVCLLRVSSVCKKWKLGVKQSLARRKNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPLDCFIGLLTI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	187	2.2.26 [Sep-21-2011]
Q9FH99	228	F-box protein At5g67140 O	yes	no	1.0	0.820	0.695	6e-75
Q9LPL4	360	F-box protein SKP2A OS=Ar	no	no	0.748	0.388	0.292	3e-11
Q9SKK0	628	EIN3-binding F-box protei	no	no	0.604	0.179	0.318	4e-10
O49286	360	F-box protein SKP2B OS=Ar	no	no	0.689	0.358	0.253	3e-09
Q9UJT9	491	F-box/LRR-repeat protein	yes	no	0.721	0.274	0.288	1e-08
Q5BJ29	491	F-box/LRR-repeat protein	yes	no	0.679	0.258	0.296	2e-08
Q5U201	258	Protein AMN1 homolog OS=R	no	no	0.518	0.375	0.398	8e-08
Q9CZV8	436	F-box/LRR-repeat protein	no	no	0.534	0.229	0.359	2e-07
Q9QZH7	276	F-box/LRR-repeat protein	no	no	0.534	0.362	0.359	2e-07
Q8LB33	353	F-box protein At3g58530 O	no	no	0.545	0.288	0.301	5e-07

>sp|Q9FH99|FB302_ARATH F-box protein At5g67140 OS=Arabidopsis thaliana GN=At5g67140 PE=2 SV=1

 Score =  280 bits (715), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 130/187 (69%), Positives = 154/187 (82%)

Query: 1   FLFVFVIPFVCLLRVSSVCKKWKLGVKQSLARRKNLSFAGWKMDDDSTARLVGYAYSLKE 60
           ++F     F  L + S VCKKW+  V QS+ARR+ LSFAGWKMDDDST+RLV  A++LKE
Sbjct: 17  YIFSLATSFTVLAQASGVCKKWRKAVNQSMARRETLSFAGWKMDDDSTSRLVHLAFNLKE 76

Query: 61  LEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNI 120
           L+ISRSRWGC ITDNGLY+++ A+C+SNL S+SLWG+T ITD GVVQLISR SSLQHLNI
Sbjct: 77  LDISRSRWGCHITDNGLYQIASARCVSNLNSVSLWGMTAITDSGVVQLISRTSSLQHLNI 136

Query: 121 GGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPLDC 180
           GGTFITDESL+AIA  C QLK+I +W CR VT  GLL LVNKC +LESIN+WGTR+P+DC
Sbjct: 137 GGTFITDESLFAIAERCHQLKTIGMWCCRHVTERGLLVLVNKCRKLESINLWGTRVPVDC 196

Query: 181 FIGLLTI 187
           FI LLTI
Sbjct: 197 FIALLTI 203

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LPL4|SKP2A_ARATH F-box protein SKP2A OS=Arabidopsis thaliana GN=SKP2A PE=1 SV=1

 Score = 68.2 bits (165), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 79/147 (53%), Gaps = 7/147 (4%)

Query: 35  NLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISL 94
           NL     +++D++   +  + + L+EL++S+S    +ITD  LY  + A    +LT ++L
Sbjct: 96  NLRQDKPQLEDNAVEAIANHCHELQELDLSKSL---KITDRSLY--ALAHGCPDLTKLNL 150

Query: 95  WGLTGITDKGVVQLISRASSLQHLNIGGTF--ITDESLYAIANSCPQLKSIVLWSCRQVT 152
            G T  +D  +  L      L+ LN+ G    +TD +L AI N+C Q++S+ L  C  ++
Sbjct: 151 SGCTSFSDTAIAYLTRFCRKLKVLNLCGCVKAVTDNALEAIGNNCNQMQSLNLGWCENIS 210

Query: 153 GNGLLFLVNKCGRLESINVWGTRLPLD 179
            +G++ L   C  L ++++ G  L  D
Sbjct: 211 DDGVMSLAYGCPDLRTLDLCGCVLITD 237

Component of SCF(SKP2A) E3 ubiquitin ligase complexes, which mediate the ubiquitination and subsequent proteasomal degradation of target proteins (including cell cycle repressors). Acts as an auxin receptor. Regulates the stability of the transcription factors E2FC and DPB, repressors of cell proliferation. Confers increase tolerance to osmotic stress by promoting cell division, especially in meristems. Promotes the formation of lateral root primordia.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SKK0|EBF1_ARATH EIN3-binding F-box protein 1 OS=Arabidopsis thaliana GN=EBF1 PE=1 SV=1

 Score = 64.7 bits (156), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 64/116 (55%), Gaps = 3/116 (2%)

Query: 65  RSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGG-T 123
           R     +++D GL   S  +   +L S+SLW ++ ITD G++++    + L+ L +   +
Sbjct: 157 RGSNSAKVSDLGLR--SIGRSCPSLGSLSLWNVSTITDNGLLEIAEGCAQLEKLELNRCS 214

Query: 124 FITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPLD 179
            ITD+ L AIA SCP L  + L +C ++   GLL +   C +L+S+++    L  D
Sbjct: 215 TITDKGLVAIAKSCPNLTELTLEACSRIGDEGLLAIARSCSKLKSVSIKNCPLVRD 270

Component of SCF(EBF1) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins (probably including EIN3 and EIL1). Regulator of the ethylene signaling cascade by modulating the stability of EIN3 and EIL1 proteins. Confers insensitivity to ethylene.

Arabidopsis thaliana (taxid: 3702)

>sp|O49286|SKP2B_ARATH F-box protein SKP2B OS=Arabidopsis thaliana GN=SKP2B PE=1 SV=1

 Score = 61.6 bits (148), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 79/162 (48%), Gaps = 33/162 (20%)

Query: 42  KMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGIT 101
           +++D++   +  + + L++L++S+S    +ITD+ LY  S A+  +NLT ++L G T  +
Sbjct: 103 QLEDNAVEAIANHCHELQDLDLSKSS---KITDHSLY--SLARGCTNLTKLNLSGCTSFS 157

Query: 102 DKGVVQLI---------------------------SRASSLQHLNIG-GTFITDESLYAI 133
           D  +  L                               + LQ LN+G    I+D+ + ++
Sbjct: 158 DTALAHLTRFCRKLKILNLCGCVEAVSDNTLQAIGENCNQLQSLNLGWCENISDDGVMSL 217

Query: 134 ANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTR 175
           A  CP L+++ L SC  +T   ++ L N+C  L S+ ++  R
Sbjct: 218 AYGCPDLRTLDLCSCVLITDESVVALANRCIHLRSLGLYYCR 259

Component of SCF(SKP2B) E3 ubiquitin ligase complexes, which mediate the ubiquitination and subsequent proteasomal degradation of the cyclin-dependent kinase inhibitor KRP1. Does not interact with auxin.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9UJT9|FBXL7_HUMAN F-box/LRR-repeat protein 7 OS=Homo sapiens GN=FBXL7 PE=2 SV=1

 Score = 59.3 bits (142), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 74/163 (45%), Gaps = 28/163 (17%)

Query: 42  KMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYR----------MSFAKC------ 85
           ++ D+    LV Y  S+KEL +S  R+   ++D GL            +S A C      
Sbjct: 310 RLTDEGLRYLVIYCASIKELSVSDCRF---VSDFGLREIAKLESRLRYLSIAHCGRVTDV 366

Query: 86  --------ISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGG-TFITDESLYAIANS 136
                    S L  ++  G  GITD GV  L    + L+ L+IG    ++D  L  +A +
Sbjct: 367 GIRYVAKYCSKLRYLNARGCEGITDHGVEYLAKNCTKLKSLDIGKCPLVSDTGLECLALN 426

Query: 137 CPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPLD 179
           C  LK + L SC  +TG GL  +   C  L+++NV    + ++
Sbjct: 427 CFNLKRLSLKSCESITGQGLQIVAANCFDLQTLNVQDCEVSVE 469

Substrate recognition component of a (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of AURKA during mitosis, causing mitotic arrest.

Homo sapiens (taxid: 9606)

>sp|Q5BJ29|FBXL7_MOUSE F-box/LRR-repeat protein 7 OS=Mus musculus GN=Fbxl7 PE=1 SV=1

 Score = 58.9 bits (141), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 71/155 (45%), Gaps = 28/155 (18%)

Query: 42  KMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMS-------------------- 81
           ++ D+    LV Y  S+KEL +S  R+   ++D GL  ++                    
Sbjct: 310 RLTDEGLRYLVIYCTSIKELSVSDCRF---VSDFGLREIAKLESRLRYLSIAHCGRITDV 366

Query: 82  ----FAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGG-TFITDESLYAIANS 136
                AK  S L  ++  G  GITD GV  L    + L+ L+IG    ++D  L ++A +
Sbjct: 367 GIRYVAKYCSKLRYLNARGCEGITDHGVEYLAKNCTKLKSLDIGKCPLVSDTGLESLALN 426

Query: 137 CPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINV 171
           C  LK + L SC  +TG GL  +   C  L+ +NV
Sbjct: 427 CFNLKRLSLKSCESITGQGLQIVAANCFDLQMLNV 461

Substrate recognition component of a (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of AURKA during mitosis, causing mitotic arrest.

Mus musculus (taxid: 10090)

>sp|Q5U201|AMN1_RAT Protein AMN1 homolog OS=Rattus norvegicus GN=Amn1 PE=2 SV=2

 Score = 56.6 bits (135), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 41/103 (39%), Positives = 62/103 (60%), Gaps = 6/103 (5%)

Query: 72  ITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTF-ITDESL 130
           IT  G+   + A   S+L  ISL G   +TD+GV+ L      L+ +++GG   ITDESL
Sbjct: 102 ITSEGIK--AVASSCSDLHEISLKGCCSVTDEGVLALALNCQLLKIIDLGGCLSITDESL 159

Query: 131 YAIANSCPQLKSIVLWSCRQVTGNGLLFLVN-KCGR-LESINV 171
           +A+  +CP L+  V +S  QV+ NG++ LV+  C + LE IN+
Sbjct: 160 HALGKNCPFLQC-VDFSTTQVSDNGVVALVSGPCAKQLEEINM 201

Rattus norvegicus (taxid: 10116)

>sp|Q9CZV8|FXL20_MOUSE F-box/LRR-repeat protein 20 OS=Mus musculus GN=Fbxl20 PE=1 SV=3

 Score = 55.5 bits (132), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 57/103 (55%), Gaps = 3/103 (2%)

Query: 72  ITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGG-TFITDESL 130
           + DN L   +FA+   N+  +SL G T  TD     L    S L+HL++   T IT+ SL
Sbjct: 104 VGDNALR--TFAQNCRNIEVLSLNGCTKTTDATCTSLSKFCSKLRHLDLASCTSITNMSL 161

Query: 131 YAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWG 173
            A++  CP L+ + +  C QVT +G+  LV  CG L+++ + G
Sbjct: 162 KALSEGCPLLEQLNISWCDQVTKDGIQALVRGCGGLKALFLKG 204

Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex. Isoform 3 regulates neural transmission by binding and ubiquitinating RIMS1, a modulator of presynaptic plasticity.

Mus musculus (taxid: 10090)

>sp|Q9QZH7|FXL20_RAT F-box/LRR-repeat protein 20 OS=Rattus norvegicus GN=Fbxl20 PE=1 SV=1

 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 57/103 (55%), Gaps = 3/103 (2%)

Query: 72  ITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGG-TFITDESL 130
           + DN L   +FA+   N+  +SL G T  TD     L    S L+HL++   T IT+ SL
Sbjct: 104 VGDNALR--TFAQNCRNIEVLSLNGCTKTTDATCTSLSKFCSKLRHLDLASCTSITNMSL 161

Query: 131 YAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWG 173
            A++  CP L+ + +  C QVT +G+  LV  CG L+++ + G
Sbjct: 162 KALSEGCPLLEQLNISWCDQVTKDGIQALVRGCGGLKALFLKG 204

Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex. Role in neural transmission.

Rattus norvegicus (taxid: 10116)

>sp|Q8LB33|FB330_ARATH F-box protein At3g58530 OS=Arabidopsis thaliana GN=At3g58530 PE=2 SV=1

 Score = 54.3 bits (129), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 59/106 (55%), Gaps = 4/106 (3%)

Query: 70  CQ-ITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGG-TFITD 127
           CQ I+DNG+   +       L   S++    +TD G+  L+     +  LN+ G   +TD
Sbjct: 121 CQKISDNGIE--AITSICPKLKVFSIYWNVRVTDAGIRNLVKNCRHITDLNLSGCKSLTD 178

Query: 128 ESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWG 173
           +S+  +A S P L+S+ +  C ++T +GLL ++ KC  L+++N++ 
Sbjct: 179 KSMQLVAESYPDLESLNITRCVKITDDGLLQVLQKCFSLQTLNLYA 224

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	187
255565258	227	ubiquitin-protein ligase, putative [Rici	1.0	0.823	0.754	6e-77
225438758	232	PREDICTED: F-box protein At5g67140 [Viti	0.994	0.801	0.741	5e-76
224081705	228	predicted protein [Populus trichocarpa]	1.0	0.820	0.737	1e-75
297794281	228	F-box family protein [Arabidopsis lyrata	1.0	0.820	0.705	3e-74
449463955	235	PREDICTED: F-box protein At5g67140-like	1.0	0.795	0.716	4e-74
388509932	208	unknown [Lotus japonicus]	0.989	0.889	0.718	2e-73
15240225	228	F-box protein [Arabidopsis thaliana] gi|	1.0	0.820	0.695	3e-73
351723989	226	uncharacterized protein LOC100306324 [Gl	0.983	0.814	0.722	4e-72
357482823	211	F-box protein [Medicago truncatula] gi|3	1.0	0.886	0.684	5e-72
356541783	226	PREDICTED: LOW QUALITY PROTEIN: F-box pr	0.983	0.814	0.722	3e-71

>gi|255565258|ref|XP_002523621.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223537183|gb|EEF38816.1| ubiquitin-protein ligase, putative [Ricinus communis]

 Score =  291 bits (746), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 141/187 (75%), Positives = 161/187 (86%)

Query: 1   FLFVFVIPFVCLLRVSSVCKKWKLGVKQSLARRKNLSFAGWKMDDDSTARLVGYAYSLKE 60
            +FV +  F  L   SSVC+KWK GVK+SL RR +LSFAG KMDD STAR+V YAYSLKE
Sbjct: 17  HIFVLINSFTDLAHASSVCRKWKEGVKRSLGRRNSLSFAGLKMDDHSTARVVRYAYSLKE 76

Query: 61  LEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNI 120
           L+ISRSRWGCQITDNGLY +S AKCISNLTSISLWG+TGITDKGVVQL+SRA+SLQHLN+
Sbjct: 77  LDISRSRWGCQITDNGLYEISLAKCISNLTSISLWGMTGITDKGVVQLMSRANSLQHLNV 136

Query: 121 GGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPLDC 180
           GGTFITDESL AIA+SCP LKSI LWSCR VT  GL++LVNKC +LESIN WGTR+P+DC
Sbjct: 137 GGTFITDESLCAIADSCPHLKSIGLWSCRHVTEIGLIYLVNKCRKLESINAWGTRVPIDC 196

Query: 181 FIGLLTI 187
           F+ LLT+
Sbjct: 197 FLCLLTV 203

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438758|ref|XP_002282881.1| PREDICTED: F-box protein At5g67140 [Vitis vinifera] gi|296082395|emb|CBI21400.3| unnamed protein product [Vitis vinifera]

 Score =  288 bits (738), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 138/186 (74%), Positives = 161/186 (86%)

Query: 2   LFVFVIPFVCLLRVSSVCKKWKLGVKQSLARRKNLSFAGWKMDDDSTARLVGYAYSLKEL 61
           +FV +  F  L + SSVC+KWK GVKQSL RR++LSFAGW+MDDDS ARL+ +AY LKEL
Sbjct: 23  IFVMLTSFTDLAQASSVCRKWKQGVKQSLGRRESLSFAGWQMDDDSIARLLRHAYGLKEL 82

Query: 62  EISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIG 121
           +ISRSRWGCQ+TDNGLY++S AKC++ LTSISLWG+TGITD GVVQLISRA SLQHLNIG
Sbjct: 83  DISRSRWGCQVTDNGLYKISLAKCVNKLTSISLWGVTGITDSGVVQLISRAISLQHLNIG 142

Query: 122 GTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPLDCF 181
           GTFITDESL+AIA SCP LK+IVLWSCR VT NGLL LV+KC +L+SINVWGTR+P+DCF
Sbjct: 143 GTFITDESLFAIAESCPCLKTIVLWSCRHVTENGLLVLVSKCRKLQSINVWGTRVPVDCF 202

Query: 182 IGLLTI 187
             LL I
Sbjct: 203 FALLAI 208

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224081705|ref|XP_002306478.1| predicted protein [Populus trichocarpa] gi|222855927|gb|EEE93474.1| predicted protein [Populus trichocarpa]

 Score =  287 bits (735), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 138/187 (73%), Positives = 162/187 (86%)

Query: 1   FLFVFVIPFVCLLRVSSVCKKWKLGVKQSLARRKNLSFAGWKMDDDSTARLVGYAYSLKE 60
           ++F F++ F  L + SSVC+KWK GVKQSLA+R ++SFAGWKMDD ST RLV  AY+LKE
Sbjct: 18  YIFGFIVSFTDLAQASSVCRKWKEGVKQSLAQRNSMSFAGWKMDDVSTTRLVRLAYNLKE 77

Query: 61  LEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNI 120
           L+ISRSRW CQITDNGLY++S A CI NLTSISLWG+  ITD+GVVQLISRA+SLQHLNI
Sbjct: 78  LDISRSRWDCQITDNGLYQISLANCIGNLTSISLWGMARITDRGVVQLISRANSLQHLNI 137

Query: 121 GGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPLDC 180
           GGTF+TDESL+AIA+SCP+LKSIVLWSCR VT  GLL L NKC +LESINVWGTR+P++C
Sbjct: 138 GGTFVTDESLFAIADSCPRLKSIVLWSCRHVTEIGLLNLANKCRKLESINVWGTRVPVNC 197

Query: 181 FIGLLTI 187
           FI LLTI
Sbjct: 198 FIDLLTI 204

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297794281|ref|XP_002865025.1| F-box family protein [Arabidopsis lyrata subsp. lyrata] gi|297310860|gb|EFH41284.1| F-box family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  282 bits (722), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 132/187 (70%), Positives = 156/187 (83%)

Query: 1   FLFVFVIPFVCLLRVSSVCKKWKLGVKQSLARRKNLSFAGWKMDDDSTARLVGYAYSLKE 60
           ++F  V  F  L + S VCKKW+  V QS+ARR++LSFAGWKMDDDST+RLV  AY+LKE
Sbjct: 17  YIFSLVTSFTVLGQASGVCKKWRKAVNQSMARRESLSFAGWKMDDDSTSRLVHLAYNLKE 76

Query: 61  LEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNI 120
           L+ISRSRWGC ITDNGLY+++ A+C+SNL S+SLWG+T ITD GVVQLISR SSLQHLNI
Sbjct: 77  LDISRSRWGCHITDNGLYQIASARCVSNLNSVSLWGMTAITDSGVVQLISRTSSLQHLNI 136

Query: 121 GGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPLDC 180
           GGTFITDESL+AIA  C  LK+I +W CR VT  GLL LVNKCG+LESIN+WGTR+P+DC
Sbjct: 137 GGTFITDESLFAIAERCHHLKTIGMWCCRHVTERGLLVLVNKCGKLESINLWGTRVPVDC 196

Query: 181 FIGLLTI 187
           FI LLTI
Sbjct: 197 FIALLTI 203

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463955|ref|XP_004149695.1| PREDICTED: F-box protein At5g67140-like [Cucumis sativus] gi|449508293|ref|XP_004163274.1| PREDICTED: F-box protein At5g67140-like [Cucumis sativus]

 Score =  282 bits (722), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 134/187 (71%), Positives = 157/187 (83%)

Query: 1   FLFVFVIPFVCLLRVSSVCKKWKLGVKQSLARRKNLSFAGWKMDDDSTARLVGYAYSLKE 60
            +F  +  F  L +   VC+KWK GVK SL RRK+LSFAGWKMDD+STARL+ +AYSL+E
Sbjct: 30  HIFAMITSFTDLAQACGVCRKWKEGVKLSLGRRKSLSFAGWKMDDNSTARLIRHAYSLRE 89

Query: 61  LEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNI 120
           L+ISRSRWGC ITD+GLY +S AKCI NL SISLWG+ GITDKGVVQLISRA+SLQ+LNI
Sbjct: 90  LDISRSRWGCHITDHGLYEISLAKCIPNLKSISLWGMAGITDKGVVQLISRANSLQNLNI 149

Query: 121 GGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPLDC 180
           GGTF+TD SLYAIA+SCP LK+IVLWSCR VT  GLL LV+KC +LESINVWG R+P+DC
Sbjct: 150 GGTFVTDVSLYAIADSCPNLKTIVLWSCRHVTETGLLILVSKCRKLESINVWGMRVPVDC 209

Query: 181 FIGLLTI 187
           FIGL+ I
Sbjct: 210 FIGLVAI 216

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388509932|gb|AFK43032.1| unknown [Lotus japonicus]

 Score =  280 bits (715), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 133/185 (71%), Positives = 158/185 (85%)

Query: 1   FLFVFVIPFVCLLRVSSVCKKWKLGVKQSLARRKNLSFAGWKMDDDSTARLVGYAYSLKE 60
            +F     F  L + SSVCKKWK GVK+SLAR++NLSFAGWKMDDDSTARLV +AY+LK+
Sbjct: 14  HIFGLFTSFTDLAQSSSVCKKWKQGVKESLARKQNLSFAGWKMDDDSTARLVSHAYNLKK 73

Query: 61  LEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNI 120
           L+I RSRWGCQITD GL R+SFAKC+ NLTSISLWGLTGITD+GVVQLISR  SLQHLN+
Sbjct: 74  LDIPRSRWGCQITDAGLIRISFAKCVINLTSISLWGLTGITDEGVVQLISRTRSLQHLNV 133

Query: 121 GGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPLDC 180
           GGTFITDESL+AIA SCP+L++IVLWSCR VT NGL+ LV+ C +L+S+N+WGTR+P+DC
Sbjct: 134 GGTFITDESLFAIARSCPKLETIVLWSCRHVTENGLIALVDNCLKLKSMNLWGTRVPVDC 193

Query: 181 FIGLL 185
              LL
Sbjct: 194 LSNLL 198

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15240225|ref|NP_201515.1| F-box protein [Arabidopsis thaliana] gi|75262475|sp|Q9FH99.1|FB302_ARATH RecName: Full=F-box protein At5g67140 gi|10177601|dbj|BAB10948.1| unnamed protein product [Arabidopsis thaliana] gi|18252175|gb|AAL61920.1| unknown protein [Arabidopsis thaliana] gi|21386939|gb|AAM47873.1| unknown protein [Arabidopsis thaliana] gi|332010923|gb|AED98306.1| F-box protein [Arabidopsis thaliana]

 Score =  280 bits (715), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 130/187 (69%), Positives = 154/187 (82%)

Query: 1   FLFVFVIPFVCLLRVSSVCKKWKLGVKQSLARRKNLSFAGWKMDDDSTARLVGYAYSLKE 60
           ++F     F  L + S VCKKW+  V QS+ARR+ LSFAGWKMDDDST+RLV  A++LKE
Sbjct: 17  YIFSLATSFTVLAQASGVCKKWRKAVNQSMARRETLSFAGWKMDDDSTSRLVHLAFNLKE 76

Query: 61  LEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNI 120
           L+ISRSRWGC ITDNGLY+++ A+C+SNL S+SLWG+T ITD GVVQLISR SSLQHLNI
Sbjct: 77  LDISRSRWGCHITDNGLYQIASARCVSNLNSVSLWGMTAITDSGVVQLISRTSSLQHLNI 136

Query: 121 GGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPLDC 180
           GGTFITDESL+AIA  C QLK+I +W CR VT  GLL LVNKC +LESIN+WGTR+P+DC
Sbjct: 137 GGTFITDESLFAIAERCHQLKTIGMWCCRHVTERGLLVLVNKCRKLESINLWGTRVPVDC 196

Query: 181 FIGLLTI 187
           FI LLTI
Sbjct: 197 FIALLTI 203

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723989|ref|NP_001237042.1| uncharacterized protein LOC100306324 [Glycine max] gi|255628203|gb|ACU14446.1| unknown [Glycine max]

 Score =  276 bits (705), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 133/184 (72%), Positives = 155/184 (84%)

Query: 2   LFVFVIPFVCLLRVSSVCKKWKLGVKQSLARRKNLSFAGWKMDDDSTARLVGYAYSLKEL 61
           +FV    F  L + S VCKKWK GVK+SLARR NLSFAGWKMDDDSTARLV +AY+L +L
Sbjct: 18  IFVLFTSFTDLAQASGVCKKWKQGVKESLARRHNLSFAGWKMDDDSTARLVYHAYNLTKL 77

Query: 62  EISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIG 121
           +I RSRWGCQITD GL R+SFAKCISNLTSISLWGLTGITD+GVVQLISR  SLQHLN+G
Sbjct: 78  DIPRSRWGCQITDAGLLRISFAKCISNLTSISLWGLTGITDEGVVQLISRTRSLQHLNVG 137

Query: 122 GTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPLDCF 181
           GTFITDESL+ IA SCP+L++IVLWSCR VT +GL  LV++C +L+S+NVWGTR+P +C 
Sbjct: 138 GTFITDESLFVIARSCPKLETIVLWSCRHVTESGLFALVDQCLKLKSMNVWGTRVPEECL 197

Query: 182 IGLL 185
             LL
Sbjct: 198 NNLL 201

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357482823|ref|XP_003611698.1| F-box protein [Medicago truncatula] gi|355513033|gb|AES94656.1| F-box protein [Medicago truncatula]

 Score =  275 bits (704), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 128/187 (68%), Positives = 159/187 (85%)

Query: 1   FLFVFVIPFVCLLRVSSVCKKWKLGVKQSLARRKNLSFAGWKMDDDSTARLVGYAYSLKE 60
            +FV    F  L + S VCKKWK GVK+SLARR+NLSFAGWKMDDDST+RLV +AY+L++
Sbjct: 17  HIFVLFTSFTDLAQASKVCKKWKQGVKESLARRQNLSFAGWKMDDDSTSRLVSHAYNLRK 76

Query: 61  LEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNI 120
           L+I RSRW CQITD GL R+S+AKCI+NLTSISLWGLTGITD+GVV+LISR  SL+HLN+
Sbjct: 77  LDIPRSRWSCQITDAGLIRISYAKCINNLTSISLWGLTGITDEGVVKLISRTKSLRHLNV 136

Query: 121 GGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPLDC 180
           GGTFITDESL+AIA SCP++++IVLWSCR VT NGL+ LV++C +L+S+NVWG R+P+DC
Sbjct: 137 GGTFITDESLFAIARSCPKMETIVLWSCRHVTENGLIALVDQCLKLKSMNVWGLRVPVDC 196

Query: 181 FIGLLTI 187
              LL +
Sbjct: 197 LNNLLIM 203

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356541783|ref|XP_003539352.1| PREDICTED: LOW QUALITY PROTEIN: F-box protein At5g67140-like [Glycine max]

 Score =  273 bits (697), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 133/184 (72%), Positives = 154/184 (83%)

Query: 2   LFVFVIPFVCLLRVSSVCKKWKLGVKQSLARRKNLSFAGWKMDDDSTARLVGYAYSLKEL 61
           +FV    F  L + S VCKKWK GVK+SLARR NLSFAGWKMDDDSTARLV +AY+L +L
Sbjct: 18  IFVLFTSFTDLAQASGVCKKWKQGVKESLARRHNLSFAGWKMDDDSTARLVFHAYNLTKL 77

Query: 62  EISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIG 121
           EI RS WGCQITD GL R+SFAKCISNLTSISLWGLTGITD+GVVQLISR  SLQ LN+G
Sbjct: 78  EIPRSCWGCQITDAGLLRISFAKCISNLTSISLWGLTGITDEGVVQLISRTRSLQRLNVG 137

Query: 122 GTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPLDCF 181
           GTFITDESL+ IA SCP+L++IVLWSCR VT NGL  LV++C +L+S+NVWGTR+P++C 
Sbjct: 138 GTFITDESLFTIARSCPKLETIVLWSCRHVTENGLFALVDQCLKLKSMNVWGTRVPVECL 197

Query: 182 IGLL 185
             LL
Sbjct: 198 NNLL 201

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	187
TAIR|locus:2155548	228	AT5G67140 [Arabidopsis thalian	1.0	0.820	0.695	8.9e-70
TAIR|locus:2027082	360	SKP2A [Arabidopsis thaliana (t	0.711	0.369	0.292	1.7e-12
TAIR|locus:2040105	628	EBF1 "AT2G25490" [Arabidopsis	0.705	0.210	0.330	2.5e-12
TAIR|locus:2076376	353	AT3G58530 [Arabidopsis thalian	0.705	0.373	0.347	2.6e-12
TAIR|locus:2166978	405	AT5G23340 [Arabidopsis thalian	0.743	0.343	0.3	2.1e-10
RGD|621722	276	Fbxl20 "F-box and leucine-rich	0.877	0.594	0.315	2.7e-10
MGI|MGI:1919444	436	Fbxl20 "F-box and leucine-rich	0.877	0.376	0.315	8.4e-10
UNIPROTKB|D6RDY7	444	FBXL7 "F-box/LRR-repeat protei	0.711	0.299	0.328	1.4e-09
RGD|1305813	449	Fbxl7 "F-box and leucine-rich	0.711	0.296	0.335	1.5e-09
UNIPROTKB|J3KNM9	479	FBXL7 "F-box/LRR-repeat protei	0.711	0.277	0.328	1.6e-09

TAIR|locus:2155548 AT5G67140 [Arabidopsis thaliana (taxid:3702)]

 Score = 707 (253.9 bits), Expect = 8.9e-70, P = 8.9e-70
 Identities = 130/187 (69%), Positives = 154/187 (82%)

Query:     1 FLFVFVIPFVCLLRVSSVCKKWKLGVKQSLARRKNLSFAGWKMDDDSTARLVGYAYSLKE 60
             ++F     F  L + S VCKKW+  V QS+ARR+ LSFAGWKMDDDST+RLV  A++LKE
Sbjct:    17 YIFSLATSFTVLAQASGVCKKWRKAVNQSMARRETLSFAGWKMDDDSTSRLVHLAFNLKE 76

Query:    61 LEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNI 120
             L+ISRSRWGC ITDNGLY+++ A+C+SNL S+SLWG+T ITD GVVQLISR SSLQHLNI
Sbjct:    77 LDISRSRWGCHITDNGLYQIASARCVSNLNSVSLWGMTAITDSGVVQLISRTSSLQHLNI 136

Query:   121 GGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPLDC 180
             GGTFITDESL+AIA  C QLK+I +W CR VT  GLL LVNKC +LESIN+WGTR+P+DC
Sbjct:   137 GGTFITDESLFAIAERCHQLKTIGMWCCRHVTERGLLVLVNKCRKLESINLWGTRVPVDC 196

Query:   181 FIGLLTI 187
             FI LLTI
Sbjct:   197 FIALLTI 203

GO:0005737 "cytoplasm" evidence=ISM

TAIR|locus:2027082 SKP2A [Arabidopsis thaliana (taxid:3702)]

 Score = 172 (65.6 bits), Expect = 1.7e-12, P = 1.7e-12
 Identities = 41/140 (29%), Positives = 78/140 (55%)

Query:    42 KMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGIT 101
             +++D++   +  + + L+EL++S+S    +ITD  LY ++   C  +LT ++L G T  +
Sbjct:   103 QLEDNAVEAIANHCHELQELDLSKS---LKITDRSLYALAHG-C-PDLTKLNLSGCTSFS 157

Query:   102 DKGVVQLISRASSLQHLNIGGTF--ITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFL 159
             D  +  L      L+ LN+ G    +TD +L AI N+C Q++S+ L  C  ++ +G++ L
Sbjct:   158 DTAIAYLTRFCRKLKVLNLCGCVKAVTDNALEAIGNNCNQMQSLNLGWCENISDDGVMSL 217

Query:   160 VNKCGRLESINVWGTRLPLD 179
                C  L ++++ G  L  D
Sbjct:   218 AYGCPDLRTLDLCGCVLITD 237

GO:0005737 "cytoplasm" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0019005 "SCF ubiquitin ligase complex" evidence=IDA;IPI

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=IDA;IPI

GO:0005634 "nucleus" evidence=IDA

GO:0010311 "lateral root formation" evidence=IMP

GO:0051781 "positive regulation of cell division" evidence=IMP

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0071365 "cellular response to auxin stimulus" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2040105 EBF1 "AT2G25490" [Arabidopsis thaliana (taxid:3702)]

 Score = 175 (66.7 bits), Expect = 2.5e-12, P = 2.5e-12
 Identities = 46/139 (33%), Positives = 75/139 (53%)

Query:    37 SFAGWKMDDDSTARL-VGYAY--SLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSIS 93
             S  G K  D   A + VG A    L +L I  S    +++D GL   S  +   +L S+S
Sbjct:   127 SLDGKKATDVRLAAIAVGTAGRGGLGKLSIRGSN-SAKVSDLGL--RSIGRSCPSLGSLS 183

Query:    94 LWGLTGITDKGVVQLISRASSLQHLNIGG-TFITDESLYAIANSCPQLKSIVLWSCRQVT 152
             LW ++ ITD G++++    + L+ L +   + ITD+ L AIA SCP L  + L +C ++ 
Sbjct:   184 LWNVSTITDNGLLEIAEGCAQLEKLELNRCSTITDKGLVAIAKSCPNLTELTLEACSRIG 243

Query:   153 GNGLLFLVNKCGRLESINV 171
               GLL +   C +L+S+++
Sbjct:   244 DEGLLAIARSCSKLKSVSI 262

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA;TAS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009723 "response to ethylene stimulus" evidence=IMP

GO:0010105 "negative regulation of ethylene mediated signaling pathway" evidence=TAS

GO:0042752 "regulation of circadian rhythm" evidence=RCA

TAIR|locus:2076376 AT3G58530 [Arabidopsis thaliana (taxid:3702)]

 Score = 170 (64.9 bits), Expect = 2.6e-12, P = 2.6e-12
 Identities = 49/141 (34%), Positives = 84/141 (59%)

Query:    35 NLSFAGWKMDDDSTARLVGYAY-SLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSIS 93
             +L+ +G K   D + +LV  +Y  L+ L I+R     +ITD+GL ++   KC S L +++
Sbjct:   167 DLNLSGCKSLTDKSMQLVAESYPDLESLNITRC---VKITDDGLLQV-LQKCFS-LQTLN 221

Query:    94 LWGLTGITDKGVVQLISRASSLQHLNI-GGTFITDESLYAIANSCPQLKSIVLWSCRQVT 152
             L+ L+G TDK  ++ IS  + L+ L+I G   I+DE +  IA  C +L+S+ L  C ++T
Sbjct:   222 LYALSGFTDKAYMK-ISLLADLRFLDICGAQNISDEGIGHIAK-CNKLESLNLTWCVRIT 279

Query:   153 GNGLLFLVNKCGRLESINVWG 173
               G+  + N C  LE ++++G
Sbjct:   280 DAGVNTIANSCTSLEFLSLFG 300

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2166978 AT5G23340 [Arabidopsis thaliana (taxid:3702)]

 Score = 154 (59.3 bits), Expect = 2.1e-10, P = 2.1e-10
 Identities = 45/150 (30%), Positives = 79/150 (52%)

Query:    23 KLGVKQSLARRKNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSF 82
             +L + QS++R    SF     D D      G+ + L+ L +   + G  ITD GL   S 
Sbjct:    70 ELDLSQSISR----SFYPGVTDSDLAVISEGFKF-LRVLNLHNCK-G--ITDTGL--ASI 119

Query:    83 AKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGT-FITDESLYAIANSCPQLK 141
              +C+S L  + +     ++DKG+  +      L+ L++ G  FITDESL +++  C  L+
Sbjct:   120 GRCLSLLQFLDVSYCRKLSDKGLSAVAEGCHDLRALHLAGCRFITDESLKSLSERCRDLE 179

Query:   142 SIVLWSCRQVTGNGLLFLVNKCGRLESINV 171
             ++ L  C  +T +GL  LV  C +++S+++
Sbjct:   180 ALGLQGCTNITDSGLADLVKGCRKIKSLDI 209

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

RGD|621722 Fbxl20 "F-box and leucine-rich repeat protein 20" [Rattus norvegicus (taxid:10116)]

 Score = 149 (57.5 bits), Expect = 2.7e-10, P = 2.7e-10
 Identities = 58/184 (31%), Positives = 95/184 (51%)

Query:     2 LFVFVIPFVCLLRVSSVCKKWK-LGVKQSLARRKNL-SFAG---WKMDDDSTARLVGYAY 56
             +F F +  V L R + V + W  L +  S  +R +L  F      ++ ++ + R  G+  
Sbjct:    36 IFSF-LDVVTLCRCAQVSRAWNVLALDGSNWQRIDLFDFQRDIEGRVVENISKRCGGF-- 92

Query:    57 SLKELEISRSRWGCQ-ITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSL 115
              L++L +     GC  + DN L   +FA+   N+  +SL G T  TD     L    S L
Sbjct:    93 -LRKLSLR----GCLGVGDNAL--RTFAQNCRNIEVLSLNGCTKTTDATCTSLSKFCSKL 145

Query:   116 QHLNIGG-TFITDESLYAIANSCPQLKSI-VLWSCRQVTGNGLLFLVNKCGRLESINVWG 173
             +HL++   T IT+ SL A++  CP L+ + + W C QVT +G+  LV  CG L+++ + G
Sbjct:   146 RHLDLASCTSITNMSLKALSEGCPLLEQLNISW-CDQVTKDGIQALVRGCGGLKALFLKG 204

Query:   174 -TRL 176
              T+L
Sbjct:   205 CTQL 208

GO:0005737 "cytoplasm" evidence=IEA

MGI|MGI:1919444 Fbxl20 "F-box and leucine-rich repeat protein 20" [Mus musculus (taxid:10090)]

 Score = 149 (57.5 bits), Expect = 8.4e-10, P = 8.4e-10
 Identities = 58/184 (31%), Positives = 95/184 (51%)

Query:     2 LFVFVIPFVCLLRVSSVCKKWK-LGVKQSLARRKNL-SFAG---WKMDDDSTARLVGYAY 56
             +F F +  V L R + V + W  L +  S  +R +L  F      ++ ++ + R  G+  
Sbjct:    36 IFSF-LDVVTLCRCAQVSRAWNVLALDGSNWQRIDLFDFQRDIEGRVVENISKRCGGF-- 92

Query:    57 SLKELEISRSRWGCQ-ITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSL 115
              L++L +     GC  + DN L   +FA+   N+  +SL G T  TD     L    S L
Sbjct:    93 -LRKLSLR----GCLGVGDNAL--RTFAQNCRNIEVLSLNGCTKTTDATCTSLSKFCSKL 145

Query:   116 QHLNIGG-TFITDESLYAIANSCPQLKSI-VLWSCRQVTGNGLLFLVNKCGRLESINVWG 173
             +HL++   T IT+ SL A++  CP L+ + + W C QVT +G+  LV  CG L+++ + G
Sbjct:   146 RHLDLASCTSITNMSLKALSEGCPLLEQLNISW-CDQVTKDGIQALVRGCGGLKALFLKG 204

Query:   174 -TRL 176
              T+L
Sbjct:   205 CTQL 208

GO:0005515 "protein binding" evidence=IPI

GO:0005575 "cellular_component" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|D6RDY7 FBXL7 "F-box/LRR-repeat protein 7" [Homo sapiens (taxid:9606)]

 Score = 147 (56.8 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 46/140 (32%), Positives = 70/140 (50%)

Query:    34 KNLSFAGWKMDDDSTARLVGYAYS-LKELEISRSRWGCQITDNGLYRMSFAKCISNLTSI 92
             K LS +  +   D   R +    S L+ L I+    G ++TD G+  +  AK  S L  +
Sbjct:   280 KELSVSDCRFVSDFGLREIAKLESRLRYLSIAHC--G-RVTDVGIRYV--AKYCSKLRYL 334

Query:    93 SLWGLTGITDKGVVQLISRASSLQHLNIGGT-FITDESLYAIANSCPQLKSIVLWSCRQV 151
             +  G  GITD GV  L    + L+ L+IG    ++D  L  +A +C  LK + L SC  +
Sbjct:   335 NARGCEGITDHGVEYLAKNCTKLKSLDIGKCPLVSDTGLECLALNCFNLKRLSLKSCESI 394

Query:   152 TGNGLLFLVNKCGRLESINV 171
             TG GL  +   C  L+++NV
Sbjct:   395 TGQGLQIVAANCFDLQTLNV 414

GO:0000086 "G2/M transition of mitotic cell cycle" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0019005 "SCF ubiquitin ligase complex" evidence=IEA

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

RGD|1305813 Fbxl7 "F-box and leucine-rich repeat protein 7" [Rattus norvegicus (taxid:10116)]

 Score = 147 (56.8 bits), Expect = 1.5e-09, P = 1.5e-09
 Identities = 47/140 (33%), Positives = 70/140 (50%)

Query:    34 KNLSFAGWKMDDDSTARLVGYAYS-LKELEISRSRWGCQITDNGLYRMSFAKCISNLTSI 92
             K LS +  +   D   R +    S L+ L I+    G +ITD G+  +  AK  S L  +
Sbjct:   285 KELSVSDCRFVSDFGLREIAKLESRLRYLSIAHC--G-RITDVGIRYV--AKYCSKLRYL 339

Query:    93 SLWGLTGITDKGVVQLISRASSLQHLNIGGT-FITDESLYAIANSCPQLKSIVLWSCRQV 151
             +  G  GITD GV  L    + L+ L+IG    ++D  L ++A +C  LK + L SC  +
Sbjct:   340 NARGCEGITDHGVEYLAKNCTKLKSLDIGKCPLVSDTGLESLALNCFNLKRLSLKSCESI 399

Query:   152 TGNGLLFLVNKCGRLESINV 171
             TG GL  +   C  L+ +NV
Sbjct:   400 TGQGLQIVAANCFDLQMLNV 419

GO:0000086 "G2/M transition of mitotic cell cycle" evidence=IEA;ISO

GO:0005813 "centrosome" evidence=IEA;ISO

GO:0007067 "mitosis" evidence=IEA;ISO

GO:0008283 "cell proliferation" evidence=IEA;ISO

GO:0016567 "protein ubiquitination" evidence=ISO

GO:0019005 "SCF ubiquitin ligase complex" evidence=IEA;ISO

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA;ISO

UNIPROTKB|J3KNM9 FBXL7 "F-box/LRR-repeat protein 7" [Homo sapiens (taxid:9606)]

 Score = 147 (56.8 bits), Expect = 1.6e-09, P = 1.6e-09
 Identities = 46/140 (32%), Positives = 70/140 (50%)

Query:    34 KNLSFAGWKMDDDSTARLVGYAYS-LKELEISRSRWGCQITDNGLYRMSFAKCISNLTSI 92
             K LS +  +   D   R +    S L+ L I+    G ++TD G+  +  AK  S L  +
Sbjct:   315 KELSVSDCRFVSDFGLREIAKLESRLRYLSIAHC--G-RVTDVGIRYV--AKYCSKLRYL 369

Query:    93 SLWGLTGITDKGVVQLISRASSLQHLNIGGT-FITDESLYAIANSCPQLKSIVLWSCRQV 151
             +  G  GITD GV  L    + L+ L+IG    ++D  L  +A +C  LK + L SC  +
Sbjct:   370 NARGCEGITDHGVEYLAKNCTKLKSLDIGKCPLVSDTGLECLALNCFNLKRLSLKSCESI 429

Query:   152 TGNGLLFLVNKCGRLESINV 171
             TG GL  +   C  L+++NV
Sbjct:   430 TGQGLQIVAANCFDLQTLNV 449

GO:0000086 "G2/M transition of mitotic cell cycle" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0019005 "SCF ubiquitin ligase complex" evidence=IEA

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FH99	FB302_ARATH	No assigned EC number	0.6951	1.0	0.8201	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00019521001 SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (232 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	187
cd09293	226	cd09293, AMN1, Antagonist of mitotic exit network	4e-11
cd09293	226	cd09293, AMN1, Antagonist of mitotic exit network	5e-08
cd09293	226	cd09293, AMN1, Antagonist of mitotic exit network	3e-06
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	9e-05

>gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1

 Score = 59.3 bits (144), Expect = 4e-11
 Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 7/119 (5%)

Query: 70  CQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGG-TFITDE 128
           C I+D  L ++S       L  + L G   I D+G++ L     +LQ L++     ITD 
Sbjct: 38  CPISDPPLDQLSNCN---KLKKLILPGSKLIDDEGLIALAQSCPNLQVLDLRACENITDS 94

Query: 129 SLYAIANSCPQLKSIVL---WSCRQVTGNGLLFLVNKCGRLESINVWGTRLPLDCFIGL 184
            + A+A +CP+L++I L    +   +T   L  L   C  L+++   G  +       L
Sbjct: 95  GIVALATNCPKLQTINLGRHRNGHLITDVSLSALGKNCTFLQTVGFAGCDVTDKGVWEL 153

Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226

>gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1

 Score = 50.8 bits (122), Expect = 5e-08
 Identities = 31/131 (23%), Positives = 57/131 (43%), Gaps = 11/131 (8%)

Query: 42  KMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISL---WGLT 98
            +DD+    L     +L+ L++        ITD+G+   + A     L +I+L       
Sbjct: 64  LIDDEGLIALAQSCPNLQVLDLRAC---ENITDSGIV--ALATNCPKLQTINLGRHRNGH 118

Query: 99  GITDKGVVQLISRASSLQHLNIGGTFITDESLYAIANSC-PQLKSIVLWSCRQVTGNGL- 156
            ITD  +  L    + LQ +   G  +TD+ ++ +A+ C   L+ + L +CR +T   + 
Sbjct: 119 LITDVSLSALGKNCTFLQTVGFAGCDVTDKGVWELASGCSKSLERLSLNNCRNLTDQSIP 178

Query: 157 -LFLVNKCGRL 166
            +   N    L
Sbjct: 179 AILASNYFPNL 189

Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226

>gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1

 Score = 45.4 bits (108), Expect = 3e-06
 Identities = 32/100 (32%), Positives = 50/100 (50%), Gaps = 7/100 (7%)

Query: 58  LKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRAS-SLQ 116
           L+ + + R R G  ITD  L   +  K  + L ++   G   +TDKGV +L S  S SL+
Sbjct: 106 LQTINLGRHRNGHLITDVSL--SALGKNCTFLQTVGFAG-CDVTDKGVWELASGCSKSLE 162

Query: 117 HLNIGG-TFITDESLYAI--ANSCPQLKSIVLWSCRQVTG 153
            L++     +TD+S+ AI  +N  P L  +    C  +T 
Sbjct: 163 RLSLNNCRNLTDQSIPAILASNYFPNLSVLEFRGCPLITD 202

Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 41.6 bits (98), Expect = 9e-05
 Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 13/100 (13%)

Query: 57  SLKELEISRSRWGCQITDNGLYRMSFA-KCISNLTSISLWGLTGITDKGVVQL---ISRA 112
            LKEL ++ +     I D G+  ++   K   NL  + L    G+TD+G   L   ++  
Sbjct: 166 DLKELNLANN----GIGDAGIRALAEGLKANCNLEVLDLN-NNGLTDEGASALAETLASL 220

Query: 113 SSLQHLNIGGTFITDESLYAIANSCP----QLKSIVLWSC 148
            SL+ LN+G   +TD    A+A++       L ++ L   
Sbjct: 221 KSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCN 260

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	187
KOG4341	483	consensus F-box protein containing LRR [General fu	99.81
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.8
KOG4341	483	consensus F-box protein containing LRR [General fu	99.52
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.4
KOG1947	482	consensus Leucine rich repeat proteins, some prote	99.39
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.39
KOG1947	482	consensus Leucine rich repeat proteins, some prote	99.34
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.3
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.09
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.05
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.8
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.58
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.56
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.46
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.46
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.45
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.42
KOG3864	221	consensus Uncharacterized conserved protein [Funct	98.42
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.34
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.31
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.29
KOG3864	221	consensus Uncharacterized conserved protein [Funct	98.24
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.23
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.91
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	97.89
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	97.87
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	97.8
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	97.71
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.68
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.65
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.6
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.49
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	97.45
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	97.45
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.42
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.41
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	97.4
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.28
PLN03150	623	hypothetical protein; Provisional	97.27
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.19
KOG4308	478	consensus LRR-containing protein [Function unknown	97.16
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.14
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.09
KOG4308	478	consensus LRR-containing protein [Function unknown	97.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	96.96
PLN03150	623	hypothetical protein; Provisional	96.92
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	96.9
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	96.88
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	96.86
PLN03210	1153	Resistant to P. syringae 6; Provisional	96.82
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	96.81
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	96.7
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	96.68
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.65
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	96.4
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	96.25
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	96.15
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.1
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	96.0
KOG4237	498	consensus Extracellular matrix protein slit, conta	95.95
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	95.65
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	95.49
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	95.19
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	94.72
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.45
KOG3763	585	consensus mRNA export factor TAP/MEX67 [RNA proces	94.41
KOG0617	264	consensus Ras suppressor protein (contains leucine	94.21
KOG0472	565	consensus Leucine-rich repeat protein [Function un	93.98
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	93.85
KOG0617	264	consensus Ras suppressor protein (contains leucine	93.8
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	93.15
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	92.86
KOG4237	498	consensus Extracellular matrix protein slit, conta	92.51
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	92.21
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	91.3
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	90.98
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	90.58
KOG3763	585	consensus mRNA export factor TAP/MEX67 [RNA proces	89.71
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	88.27
PF07723	26	LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Le	85.6
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	84.86
KOG3735	353	consensus Tropomodulin and leiomodulin [Cytoskelet	84.85
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	84.3
KOG3735	353	consensus Tropomodulin and leiomodulin [Cytoskelet	83.45
smart00370	26	LRR Leucine-rich repeats, outliers.	83.34
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	83.34
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	82.93
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	82.15
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	80.76
PRK15386	426	type III secretion protein GogB; Provisional	80.74

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.81  E-value=6.5e-21  Score=142.91  Aligned_cols=177  Identities=28%  Similarity=0.444  Sum_probs=142.0

Q ss_pred             CccccccchhHHHHHHHhhHHHHH-HhhhhhcccceeeecccccCHHHHHHHHhcCC-CCcEEEeeeccCCcccchhhhh
Q 037671            1 FLFVFVIPFVCLLRVSSVCKKWKL-GVKQSLARRKNLSFAGWKMDDDSTARLVGYAY-SLKELEISRSRWGCQITDNGLY   78 (187)
Q Consensus         1 ~I~~~l~~~~~~~~~~~vck~w~~-~~~~~l~~~~~l~~~~~~l~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~l~   78 (187)
                      .||++|+. +.+.+++++|+.|+. ++++..|+++++--....++-..++.+.++|. .|+.|.+.++.   .+.+..+.
T Consensus        82 kvFS~LDt-ksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~g~VV~~~~~Rcgg~lk~LSlrG~r---~v~~sslr  157 (483)
T KOG4341|consen   82 KVFSMLDT-KSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVDGGVVENMISRCGGFLKELSLRGCR---AVGDSSLR  157 (483)
T ss_pred             HHHHHHhH-HHHHHHHHHHHHhhhhhhccccceeeehhcchhcCCCcceehHhhhhccccccccccccc---cCCcchhh
Confidence            38999996 999999999999999 55778998866522222344445666777764 58889888653   56677766


Q ss_pred             hhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecC-CCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHH
Q 037671           79 RMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGG-TFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLL  157 (187)
Q Consensus        79 ~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~  157 (187)
                      ..  +..||++++|++.+|.++++..+..+.+.|++|++|++-. ..+++..++.++.+||+|+.|++++|+.++..+++
T Consensus       158 t~--~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~  235 (483)
T KOG4341|consen  158 TF--ASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQ  235 (483)
T ss_pred             HH--hhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcch
Confidence            65  5679999999999998899999999999999999999988 67888888889999999999999999999988888


Q ss_pred             HHHhcCCCCcEEEeeCC-CCCHHHHHh
Q 037671          158 FLVNKCGRLESINVWGT-RLPLDCFIG  183 (187)
Q Consensus       158 ~l~~~~~~L~~L~l~~~-~i~~~~~~~  183 (187)
                      .+..+|+.++.+.++|| +..++.+..
T Consensus       236 ~~~rG~~~l~~~~~kGC~e~~le~l~~  262 (483)
T KOG4341|consen  236 ALQRGCKELEKLSLKGCLELELEALLK  262 (483)
T ss_pred             HHhccchhhhhhhhcccccccHHHHHH
Confidence            88888888888877777 666666544

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.80  E-value=1.7e-19  Score=130.54  Aligned_cols=178  Identities=27%  Similarity=0.398  Sum_probs=126.0

Q ss_pred             ccccccchhHHHHHHHhhHHHHHHh-hhhhcccceeeecccccCHHHHHHHHhcC------------------------C
Q 037671            2 LFVFVIPFVCLLRVSSVCKKWKLGV-KQSLARRKNLSFAGWKMDDDSTARLVGYA------------------------Y   56 (187)
Q Consensus         2 I~~~l~~~~~~~~~~~vck~w~~~~-~~~l~~~~~l~~~~~~l~~~~~~~~~~~~------------------------~   56 (187)
                      ||+.|+ .++++.++.|||+|++.. ...+|..  +++.+..+.+..+.++.++.                        .
T Consensus       109 IFs~L~-kk~LL~~~~VC~Rfyr~~~de~lW~~--lDl~~r~i~p~~l~~l~~rgV~v~Rlar~~~~~prlae~~~~frs  185 (419)
T KOG2120|consen  109 IFSCLC-KKELLKVSGVCKRFYRLASDESLWQT--LDLTGRNIHPDVLGRLLSRGVIVFRLARSFMDQPRLAEHFSPFRS  185 (419)
T ss_pred             HHHhcc-HHHHHHHHHHHHHHhhccccccceee--eccCCCccChhHHHHHHhCCeEEEEcchhhhcCchhhhhhhhhhh
Confidence            899999 699999999999999976 5578866  44444444333333332210                        1


Q ss_pred             CCcEEEeeeccC---------------------CcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCC
Q 037671           57 SLKELEISRSRW---------------------GCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSL  115 (187)
Q Consensus        57 ~L~~L~l~~~~~---------------------~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L  115 (187)
                      .+++||+++...                     |.++.|.....++   ...+|++|+++.|.+++..++..+..+|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iA---kN~~L~~lnlsm~sG~t~n~~~ll~~scs~L  262 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIA---KNSNLVRLNLSMCSGFTENALQLLLSSCSRL  262 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHh---ccccceeeccccccccchhHHHHHHHhhhhH
Confidence            244455543210                     2255555555552   3578999999999999999999999999999


Q ss_pred             CEEEecCCCCCHHHHHH-HHhcCCccceeeccCCC-CCcHHHHHHHHhcCCCCcEEEeeCC-CCCHHHHHhhh
Q 037671          116 QHLNIGGTFITDESLYA-IANSCPQLKSIVLWSCR-QVTGNGLLFLVNKCGRLESINVWGT-RLPLDCFIGLL  185 (187)
Q Consensus       116 ~~L~l~~~~~~~~~~~~-l~~~~~~L~~L~l~~~~-~~~~~~~~~l~~~~~~L~~L~l~~~-~i~~~~~~~L~  185 (187)
                      ..|+++.+....+.+.. ++.--++|..|+++||. .+.+..++.++..||+|.+||+++| .++++.+++++
T Consensus       263 ~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~  335 (419)
T KOG2120|consen  263 DELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF  335 (419)
T ss_pred             hhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHH
Confidence            99999986655544433 34445778889998863 3566678888899999999999998 88888777664

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.52  E-value=1.8e-14  Score=108.73  Aligned_cols=166  Identities=25%  Similarity=0.321  Sum_probs=103.7

Q ss_pred             cccchhHHHHHHHhhHHHHHHhhhhhcccceeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhh--
Q 037671            5 FVIPFVCLLRVSSVCKKWKLGVKQSLARRKNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSF--   82 (187)
Q Consensus         5 ~l~~~~~~~~~~~vck~w~~~~~~~l~~~~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~--   82 (187)
                      ++.. .....++++|+.|+.+...+          -..+++..++.+...|++|+.|+++++.   .++..+++.+..  
T Consensus       176 ~iTd-~s~~sla~~C~~l~~l~L~~----------c~~iT~~~Lk~la~gC~kL~~lNlSwc~---qi~~~gv~~~~rG~  241 (483)
T KOG4341|consen  176 KITD-SSLLSLARYCRKLRHLNLHS----------CSSITDVSLKYLAEGCRKLKYLNLSWCP---QISGNGVQALQRGC  241 (483)
T ss_pred             eccH-HHHHHHHHhcchhhhhhhcc----------cchhHHHHHHHHHHhhhhHHHhhhccCc---hhhcCcchHHhccc
Confidence            4553 66788888888888743221          1234555566677777777777777653   555555444421  


Q ss_pred             ----------------------hccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecC-CCCCHHHHHHHHhcCCc
Q 037671           83 ----------------------AKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGG-TFITDESLYAIANSCPQ  139 (187)
Q Consensus        83 ----------------------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~~  139 (187)
                                            +.+++.+..+++..|..+++.++..+...+..|+.|+.++ .+++|..+..+..++++
T Consensus       242 ~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~  321 (483)
T KOG4341|consen  242 KELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHN  321 (483)
T ss_pred             hhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCc
Confidence                                  2334444455555555566666666655666667777666 56667777777777777


Q ss_pred             cceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCC-CCCHHHHHhh
Q 037671          140 LKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGT-RLPLDCFIGL  184 (187)
Q Consensus       140 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~-~i~~~~~~~L  184 (187)
                      |+.+.+.+|..+++.++..++.+|+.|+.+++.++ .++|..+..+
T Consensus       322 L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sl  367 (483)
T KOG4341|consen  322 LQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASL  367 (483)
T ss_pred             eEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhh
Confidence            77777777777777777777777777777777777 4444445444

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.40  E-value=1.3e-11  Score=93.37  Aligned_cols=145  Identities=24%  Similarity=0.301  Sum_probs=76.0

Q ss_pred             ceeeecccccCHHHH---HHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhh-ccCCCccEEEecCCCCCCHHHHHHHH
Q 037671           34 KNLSFAGWKMDDDST---ARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFA-KCISNLTSISLWGLTGITDKGVVQLI  109 (187)
Q Consensus        34 ~~l~~~~~~l~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~  109 (187)
                      +.+++.++.++....   ......++.|+.|++++|    .+++.++..+... ..+++|++|++++|. +++.+...+.
T Consensus       140 ~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n----~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~  214 (319)
T cd00116         140 EKLVLGRNRLEGASCEALAKALRANRDLKELNLANN----GIGDAGIRALAEGLKANCNLEVLDLNNNG-LTDEGASALA  214 (319)
T ss_pred             eEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCC----CCchHHHHHHHHHHHhCCCCCEEeccCCc-cChHHHHHHH
Confidence            344555555442222   222233445666666543    4444444333211 223466666666664 5554443332


Q ss_pred             ---hcCCCCCEEEecCCCCCHHHHHHHHhcC----CccceeeccCCCCCcHHHHHHHHhc---CCCCcEEEeeCCCCCHH
Q 037671          110 ---SRASSLQHLNIGGTFITDESLYAIANSC----PQLKSIVLWSCRQVTGNGLLFLVNK---CGRLESINVWGTRLPLD  179 (187)
Q Consensus       110 ---~~~~~L~~L~l~~~~~~~~~~~~l~~~~----~~L~~L~l~~~~~~~~~~~~~l~~~---~~~L~~L~l~~~~i~~~  179 (187)
                         ..+++|+.|+++++.+++.++..++..+    +.|++|++++| .+++.+...+++.   +++|+++++++|.++++
T Consensus       215 ~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~  293 (319)
T cd00116         215 ETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGNKFGEE  293 (319)
T ss_pred             HHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence               2456677777777666666666555543    46777777664 5555554444332   35667777777777766


Q ss_pred             HHHhh
Q 037671          180 CFIGL  184 (187)
Q Consensus       180 ~~~~L  184 (187)
                      +...+
T Consensus       294 ~~~~~  298 (319)
T cd00116         294 GAQLL  298 (319)
T ss_pred             HHHHH
Confidence            65444

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=99.39  E-value=2.1e-12  Score=102.79  Aligned_cols=133  Identities=29%  Similarity=0.431  Sum_probs=59.5

Q ss_pred             HHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecC-CCCCCHHH--HHHHHhcCCCCCEEEecC
Q 037671           46 DSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWG-LTGITDKG--VVQLISRASSLQHLNIGG  122 (187)
Q Consensus        46 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~-~~~~~~~~--~~~~~~~~~~L~~L~l~~  122 (187)
                      .....+...++.++.+.+..+.   .+++.++..+  +..+++|+.|++++ +..+...+  ...+.+.+++|+.|++++
T Consensus       178 ~~~~~l~~~~~~L~~l~l~~~~---~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~  252 (482)
T KOG1947|consen  178 KILLRLLSSCPLLKRLSLSGCS---KITDDSLDAL--ALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSG  252 (482)
T ss_pred             HHHHHHHhhCchhhHhhhcccc---cCChhhHHHH--HhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhh
Confidence            3344444445555555554321   3444433332  23345555555544 11111111  222333445555555555


Q ss_pred             CC-CCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCC-CCCHHHHHh
Q 037671          123 TF-ITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGT-RLPLDCFIG  183 (187)
Q Consensus       123 ~~-~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~-~i~~~~~~~  183 (187)
                      +. ++|.++..++..||+|++|.+.+|..++++++..+++.||+|++|++++| .+++.++..
T Consensus       253 ~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~  315 (482)
T KOG1947|consen  253 CGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEA  315 (482)
T ss_pred             hhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHH
Confidence            32 55555555555555555555544444555555555555555555555554 334444433

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.39  E-value=1.4e-11  Score=93.30  Aligned_cols=94  Identities=21%  Similarity=0.206  Sum_probs=45.8

Q ss_pred             CCccEEEecCCCCCCHHHHHHHHh---cCCCCCEEEecCCCCCHHHHHHH---HhcCCccceeeccCCCCCcHHHHHHHH
Q 037671           87 SNLTSISLWGLTGITDKGVVQLIS---RASSLQHLNIGGTFITDESLYAI---ANSCPQLKSIVLWSCRQVTGNGLLFLV  160 (187)
Q Consensus        87 ~~L~~L~l~~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~l---~~~~~~L~~L~l~~~~~~~~~~~~~l~  160 (187)
                      ++|+.|+++++. +++.++..+..   .+++|+.|+++++.+++.++..+   ...+++|++|++++| .+++.++..++
T Consensus       165 ~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n-~l~~~~~~~l~  242 (319)
T cd00116         165 RDLKELNLANNG-IGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN-NLTDAGAAALA  242 (319)
T ss_pred             CCcCEEECcCCC-CchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCC-cCchHHHHHHH
Confidence            445555555443 44444333322   23355555555555554443332   223445556666553 45555555554


Q ss_pred             hcC----CCCcEEEeeCCCCCHHHHH
Q 037671          161 NKC----GRLESINVWGTRLPLDCFI  182 (187)
Q Consensus       161 ~~~----~~L~~L~l~~~~i~~~~~~  182 (187)
                      ..+    +.|++|++++|.+++++..
T Consensus       243 ~~~~~~~~~L~~L~l~~n~i~~~~~~  268 (319)
T cd00116         243 SALLSPNISLLTLSLSCNDITDDGAK  268 (319)
T ss_pred             HHHhccCCCceEEEccCCCCCcHHHH
Confidence            443    4566666666655554443

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=99.34  E-value=5.3e-12  Score=100.49  Aligned_cols=141  Identities=31%  Similarity=0.436  Sum_probs=114.0

Q ss_pred             ccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEec
Q 037671           42 KMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIG  121 (187)
Q Consensus        42 ~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~  121 (187)
                      .+.+..+..+...++.|+.|+++.+.  ...+..+.........|++|+.++++++..+++.++..+...|++|+.|.+.
T Consensus       200 ~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~  277 (482)
T KOG1947|consen  200 KITDDSLDALALKCPNLEELDLSGCC--LLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLS  277 (482)
T ss_pred             cCChhhHHHHHhhCchhheecccCcc--cccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccC
Confidence            45666688899999999999998521  1233333222223566899999999999889999999999999999999988


Q ss_pred             CCC-CCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCC----CCHHHHHhh
Q 037671          122 GTF-ITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTR----LPLDCFIGL  184 (187)
Q Consensus       122 ~~~-~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~----i~~~~~~~L  184 (187)
                      ++. ++++++..++..||.|++|++++|..+++.++..++..||+|+.|.+....    +++.++..+
T Consensus       278 ~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~  345 (482)
T KOG1947|consen  278 NCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGL  345 (482)
T ss_pred             CCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHh
Confidence            866 899999999999999999999999999999999999899998887765543    666665543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.30  E-value=4.4e-12  Score=92.54  Aligned_cols=140  Identities=21%  Similarity=0.293  Sum_probs=86.7

Q ss_pred             ceeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHH-hcC
Q 037671           34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLI-SRA  112 (187)
Q Consensus        34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~  112 (187)
                      +.+++.|.++.|.....+++ -.+|++|+++.+.   .+++.++..+  -..|..|.+|++++|...++. +..+. .-.
T Consensus       213 k~lSlEg~~LdD~I~~~iAk-N~~L~~lnlsm~s---G~t~n~~~ll--~~scs~L~~LNlsWc~l~~~~-Vtv~V~his  285 (419)
T KOG2120|consen  213 KNLSLEGLRLDDPIVNTIAK-NSNLVRLNLSMCS---GFTENALQLL--LSSCSRLDELNLSWCFLFTEK-VTVAVAHIS  285 (419)
T ss_pred             hhccccccccCcHHHHHHhc-cccceeecccccc---ccchhHHHHH--HHhhhhHhhcCchHhhccchh-hhHHHhhhc
Confidence            55777788887777766665 4678888888653   7888888776  356888888888888744444 33222 234


Q ss_pred             CCCCEEEecC--CCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCC-CCCHHHH
Q 037671          113 SSLQHLNIGG--TFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGT-RLPLDCF  181 (187)
Q Consensus       113 ~~L~~L~l~~--~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~-~i~~~~~  181 (187)
                      ++|+.|+++|  ..+.+..+..++..||+|-+|+++.|..+++..+..+ -..+.|++|.++.| .|.++-+
T Consensus       286 e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~-~kf~~L~~lSlsRCY~i~p~~~  356 (419)
T KOG2120|consen  286 ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF-FKFNYLQHLSLSRCYDIIPETL  356 (419)
T ss_pred             hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHH-HhcchheeeehhhhcCCChHHe
Confidence            5666666666  3455555666666666666666666655655333333 23555566655555 4444433

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.09  E-value=4.7e-10  Score=83.40  Aligned_cols=91  Identities=29%  Similarity=0.375  Sum_probs=37.6

Q ss_pred             ccCCCccEEEecCCCCCCHHHHHHHHh---cCCCCCEEEecCCCCCHHHHHHH----HhcCCccceeeccCCCCCcHHHH
Q 037671           84 KCISNLTSISLWGLTGITDKGVVQLIS---RASSLQHLNIGGTFITDESLYAI----ANSCPQLKSIVLWSCRQVTGNGL  156 (187)
Q Consensus        84 ~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~l----~~~~~~L~~L~l~~~~~~~~~~~  156 (187)
                      .+|++|+.|++..+. ++..+-..+.+   .++.|+.|++++|.+.+++..++    -...|.|++|.+.+| .++..+.
T Consensus       210 ~~~~~LevLdl~DNt-ft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gN-eIt~da~  287 (382)
T KOG1909|consen  210 EHCPHLEVLDLRDNT-FTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGN-EITRDAA  287 (382)
T ss_pred             HhCCcceeeecccch-hhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcc-hhHHHHH
Confidence            334444444444333 33333333322   23344444444444444433222    223344455554442 4444443


Q ss_pred             HHHHhc---CCCCcEEEeeCCCC
Q 037671          157 LFLVNK---CGRLESINVWGTRL  176 (187)
Q Consensus       157 ~~l~~~---~~~L~~L~l~~~~i  176 (187)
                      ..++..   -|.|+.|+|++|.+
T Consensus       288 ~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  288 LALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHHHHHHhcchhhHHhcCCcccc
Confidence            333321   24455555555544

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.05  E-value=1.3e-09  Score=81.15  Aligned_cols=122  Identities=22%  Similarity=0.359  Sum_probs=82.5

Q ss_pred             CcEEEeeeccCCcccchhhhhhhhhh-ccCCCccEEEecCCCCCCHHHHH---HHHhcCCCCCEEEecCCCCCHHHHHHH
Q 037671           58 LKELEISRSRWGCQITDNGLYRMSFA-KCISNLTSISLWGLTGITDKGVV---QLISRASSLQHLNIGGTFITDESLYAI  133 (187)
Q Consensus        58 L~~L~l~~~~~~~~~~~~~l~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~l  133 (187)
                      |+.+...+|    ++.+.+...++.+ +.++.|+.+.++.+. |...++.   .-+.+|+.|+.|++.+|.++.++-..+
T Consensus       159 Lrv~i~~rN----rlen~ga~~~A~~~~~~~~leevr~~qN~-I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~L  233 (382)
T KOG1909|consen  159 LRVFICGRN----RLENGGATALAEAFQSHPTLEEVRLSQNG-IRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVAL  233 (382)
T ss_pred             eEEEEeecc----ccccccHHHHHHHHHhccccceEEEeccc-ccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHH
Confidence            444444443    4455555554322 445778888887554 6666553   334468889999998888888876666


Q ss_pred             Hh---cCCccceeeccCCCCCcHHHHHHHHh----cCCCCcEEEeeCCCCCHHHHHhhh
Q 037671          134 AN---SCPQLKSIVLWSCRQVTGNGLLFLVN----KCGRLESINVWGTRLPLDCFIGLL  185 (187)
Q Consensus       134 ~~---~~~~L~~L~l~~~~~~~~~~~~~l~~----~~~~L~~L~l~~~~i~~~~~~~L~  185 (187)
                      +.   .+|.|++|+++.| .+.+.|..+++.    ..|.|+.|.+.+|.|+.++...++
T Consensus       234 akaL~s~~~L~El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la  291 (382)
T KOG1909|consen  234 AKALSSWPHLRELNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALA  291 (382)
T ss_pred             HHHhcccchheeeccccc-ccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHH
Confidence            54   4566888888888 677777666553    458889999999988888776654

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.80  E-value=2.3e-09  Score=82.02  Aligned_cols=135  Identities=13%  Similarity=0.165  Sum_probs=74.2

Q ss_pred             ceeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCC
Q 037671           34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRAS  113 (187)
Q Consensus        34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  113 (187)
                      +++.+.++.+.........+.|++++.|||++|-     -...-....++...|+|+.|+++.+. +....=...--..+
T Consensus       124 ~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL-----~~nw~~v~~i~eqLp~Le~LNls~Nr-l~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  124 REISLDNYRVEDAGIEEYSKILPNVRDLDLSRNL-----FHNWFPVLKIAEQLPSLENLNLSSNR-LSNFISSNTTLLLS  197 (505)
T ss_pred             hheeecCccccccchhhhhhhCCcceeecchhhh-----HHhHHHHHHHHHhcccchhccccccc-ccCCccccchhhhh
Confidence            4566777766666655677777888888887652     22222222234567777777776543 11100000011356


Q ss_pred             CCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCC
Q 037671          114 SLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRL  176 (187)
Q Consensus       114 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i  176 (187)
                      .|+.|.++.|+++...+..+...||.|+.|++..+..+..+...  .+..+.|++|||++|++
T Consensus       198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~--~~i~~~L~~LdLs~N~l  258 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS--TKILQTLQELDLSNNNL  258 (505)
T ss_pred             hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch--hhhhhHHhhccccCCcc
Confidence            67777777777777777777777777777777664222211111  11223566666666643

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.58  E-value=4e-08  Score=75.37  Aligned_cols=119  Identities=18%  Similarity=0.209  Sum_probs=90.1

Q ss_pred             HHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHH
Q 037671           49 ARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDE  128 (187)
Q Consensus        49 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  128 (187)
                      .+-......|+.+.|.++    .+...+.+..  ++.|++++.|+++.+---....+..++...|+|+.|+++.|.+...
T Consensus       114 ~akQsn~kkL~~IsLdn~----~V~~~~~~~~--~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~  187 (505)
T KOG3207|consen  114 AAKQSNLKKLREISLDNY----RVEDAGIEEY--SKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNF  187 (505)
T ss_pred             HHHhhhHHhhhheeecCc----cccccchhhh--hhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCC
Confidence            333344567888888865    4555554333  3569999999999775445667888999999999999998654432


Q ss_pred             HHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCC
Q 037671          129 SLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGT  174 (187)
Q Consensus       129 ~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~  174 (187)
                      .-......++.+++|.++.| .++...+..++..+|+|+.|.+.+|
T Consensus       188 ~~s~~~~~l~~lK~L~l~~C-Gls~k~V~~~~~~fPsl~~L~L~~N  232 (505)
T KOG3207|consen  188 ISSNTTLLLSHLKQLVLNSC-GLSWKDVQWILLTFPSLEVLYLEAN  232 (505)
T ss_pred             ccccchhhhhhhheEEeccC-CCCHHHHHHHHHhCCcHHHhhhhcc
Confidence            22223336788999999998 8889999999999999999999998

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.56  E-value=4.2e-07  Score=75.38  Aligned_cols=140  Identities=19%  Similarity=0.230  Sum_probs=87.3

Q ss_pred             eeeecccc-cCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCC
Q 037671           35 NLSFAGWK-MDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRAS  113 (187)
Q Consensus        35 ~l~~~~~~-l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  113 (187)
                      +++++|.. +.......+...+|.|++|.+++    ..+..+.+..+  ...+|+|..|++|+++ ++.-   ...+..+
T Consensus       126 ~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~----~~~~~~dF~~l--c~sFpNL~sLDIS~Tn-I~nl---~GIS~Lk  195 (699)
T KOG3665|consen  126 HLDISGSELFSNGWPKKIGTMLPSLRSLVISG----RQFDNDDFSQL--CASFPNLRSLDISGTN-ISNL---SGISRLK  195 (699)
T ss_pred             hcCccccchhhccHHHHHhhhCcccceEEecC----ceecchhHHHH--hhccCccceeecCCCC-ccCc---HHHhccc
Confidence            34444432 23334455666678888888774    24444444444  3457888888887775 4433   2334567


Q ss_pred             CCCEEEecCCCCCH-HHHHHHHhcCCccceeeccCCCCCcHH-HHHHHH---hcCCCCcEEEeeCCCCCHHHHHhhh
Q 037671          114 SLQHLNIGGTFITD-ESLYAIANSCPQLKSIVLWSCRQVTGN-GLLFLV---NKCGRLESINVWGTRLPLDCFIGLL  185 (187)
Q Consensus       114 ~L~~L~l~~~~~~~-~~~~~l~~~~~~L~~L~l~~~~~~~~~-~~~~l~---~~~~~L~~L~l~~~~i~~~~~~~L~  185 (187)
                      +|+.|.+.+-.+.+ ..+..+++ +++|+.||++.-....+. -+....   ..+|+|+.||.+|+.++++.++.+.
T Consensus       196 nLq~L~mrnLe~e~~~~l~~LF~-L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll  271 (699)
T KOG3665|consen  196 NLQVLSMRNLEFESYQDLIDLFN-LKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELL  271 (699)
T ss_pred             cHHHHhccCCCCCchhhHHHHhc-ccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHH
Confidence            77777777744443 44555554 888999999875443333 233222   3469999999999999988877654

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.46  E-value=2.8e-07  Score=76.43  Aligned_cols=112  Identities=18%  Similarity=0.233  Sum_probs=57.4

Q ss_pred             CCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHhc
Q 037671           57 SLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIANS  136 (187)
Q Consensus        57 ~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~  136 (187)
                      +|++|++++..   .+.......+  +..+|.|++|.+.+.. +....+..++..+|+|..||++++++++-   .--.+
T Consensus       123 nL~~LdI~G~~---~~s~~W~~ki--g~~LPsL~sL~i~~~~-~~~~dF~~lc~sFpNL~sLDIS~TnI~nl---~GIS~  193 (699)
T KOG3665|consen  123 NLQHLDISGSE---LFSNGWPKKI--GTMLPSLRSLVISGRQ-FDNDDFSQLCASFPNLRSLDISGTNISNL---SGISR  193 (699)
T ss_pred             hhhhcCccccc---hhhccHHHHH--hhhCcccceEEecCce-ecchhHHHHhhccCccceeecCCCCccCc---HHHhc
Confidence            35555555421   3444444444  3445556666555443 43444555555556666666665555442   11123


Q ss_pred             CCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCCH
Q 037671          137 CPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPL  178 (187)
Q Consensus       137 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~  178 (187)
                      +++||.|.+.+-.--+...+..++ .+++|+.||+|.....+
T Consensus       194 LknLq~L~mrnLe~e~~~~l~~LF-~L~~L~vLDIS~~~~~~  234 (699)
T KOG3665|consen  194 LKNLQVLSMRNLEFESYQDLIDLF-NLKKLRVLDISRDKNND  234 (699)
T ss_pred             cccHHHHhccCCCCCchhhHHHHh-cccCCCeeecccccccc
Confidence            555555555432222224445555 47889999998774433

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.46  E-value=5.3e-08  Score=67.26  Aligned_cols=125  Identities=22%  Similarity=0.284  Sum_probs=46.3

Q ss_pred             ceeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCC
Q 037671           34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRAS  113 (187)
Q Consensus        34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  113 (187)
                      +++++.+..++.  ++.+...+..|+.|++++|    .++.-  ..+   ..+++|+.|+++.+. ++..+ ..+.+.+|
T Consensus        22 ~~L~L~~n~I~~--Ie~L~~~l~~L~~L~Ls~N----~I~~l--~~l---~~L~~L~~L~L~~N~-I~~i~-~~l~~~lp   88 (175)
T PF14580_consen   22 RELNLRGNQIST--IENLGATLDKLEVLDLSNN----QITKL--EGL---PGLPRLKTLDLSNNR-ISSIS-EGLDKNLP   88 (175)
T ss_dssp             ----------------S--TT-TT--EEE-TTS------S----TT-------TT--EEE--SS----S-C-HHHHHH-T
T ss_pred             cccccccccccc--ccchhhhhcCCCEEECCCC----CCccc--cCc---cChhhhhhcccCCCC-CCccc-cchHHhCC
Confidence            567777776553  3444445678888888876    33321  111   235888888887665 55432 12334578


Q ss_pred             CCCEEEecCCCCCH-HHHHHHHhcCCccceeeccCCCCCcHH-H-HHHHHhcCCCCcEEEeeC
Q 037671          114 SLQHLNIGGTFITD-ESLYAIANSCPQLKSIVLWSCRQVTGN-G-LLFLVNKCGRLESINVWG  173 (187)
Q Consensus       114 ~L~~L~l~~~~~~~-~~~~~l~~~~~~L~~L~l~~~~~~~~~-~-~~~l~~~~~~L~~L~l~~  173 (187)
                      +|+.|.+++|.+.+ ..+..+. .+|+|+.|++.++ .+++. . -..+...+|+|+.||-..
T Consensus        89 ~L~~L~L~~N~I~~l~~l~~L~-~l~~L~~L~L~~N-Pv~~~~~YR~~vi~~lP~Lk~LD~~~  149 (175)
T PF14580_consen   89 NLQELYLSNNKISDLNELEPLS-SLPKLRVLSLEGN-PVCEKKNYRLFVIYKLPSLKVLDGQD  149 (175)
T ss_dssp             T--EEE-TTS---SCCCCGGGG-G-TT--EEE-TT--GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred             cCCEEECcCCcCCChHHhHHHH-cCCCcceeeccCC-cccchhhHHHHHHHHcChhheeCCEE
Confidence            89999998877765 2234443 4888999999875 44432 2 334556788888887653

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.45  E-value=4.8e-08  Score=67.46  Aligned_cols=108  Identities=19%  Similarity=0.289  Sum_probs=40.1

Q ss_pred             CCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCH-HHHHHHHhcCCCCCEEEecCCCCCHHHHHHHH
Q 037671           56 YSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITD-KGVVQLISRASSLQHLNIGGTFITDESLYAIA  134 (187)
Q Consensus        56 ~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~  134 (187)
                      ..++.|++.++    .++.-  +.+  +..+.+|+.|+++.+. ++. .++    ..++.|++|++++|.+++-+ ..+.
T Consensus        19 ~~~~~L~L~~n----~I~~I--e~L--~~~l~~L~~L~Ls~N~-I~~l~~l----~~L~~L~~L~L~~N~I~~i~-~~l~   84 (175)
T PF14580_consen   19 VKLRELNLRGN----QISTI--ENL--GATLDKLEVLDLSNNQ-ITKLEGL----PGLPRLKTLDLSNNRISSIS-EGLD   84 (175)
T ss_dssp             -----------------------S----TT-TT--EEE-TTS---S--TT--------TT--EEE--SS---S-C-HHHH
T ss_pred             ccccccccccc----ccccc--cch--hhhhcCCCEEECCCCC-CccccCc----cChhhhhhcccCCCCCCccc-cchH
Confidence            35788999865    44432  222  2235789999999886 443 222    34799999999998887531 1233


Q ss_pred             hcCCccceeeccCCCCCcHH-HHHHHHhcCCCCcEEEeeCCCCCHH
Q 037671          135 NSCPQLKSIVLWSCRQVTGN-GLLFLVNKCGRLESINVWGTRLPLD  179 (187)
Q Consensus       135 ~~~~~L~~L~l~~~~~~~~~-~~~~l~~~~~~L~~L~l~~~~i~~~  179 (187)
                      ..+|+|++|++++ +.+.+- .+..+ +.+|+|+.|++.+|++++.
T Consensus        85 ~~lp~L~~L~L~~-N~I~~l~~l~~L-~~l~~L~~L~L~~NPv~~~  128 (175)
T PF14580_consen   85 KNLPNLQELYLSN-NKISDLNELEPL-SSLPKLRVLSLEGNPVCEK  128 (175)
T ss_dssp             HH-TT--EEE-TT-S---SCCCCGGG-GG-TT--EEE-TT-GGGGS
T ss_pred             HhCCcCCEEECcC-CcCCChHHhHHH-HcCCCcceeeccCCcccch
Confidence            4689999999988 466553 34444 4699999999999988754

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.42  E-value=4.1e-08  Score=78.11  Aligned_cols=118  Identities=19%  Similarity=0.223  Sum_probs=69.2

Q ss_pred             cCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCH--HHHH
Q 037671           54 YAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITD--ESLY  131 (187)
Q Consensus        54 ~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~  131 (187)
                      +++.|+.|+|+.|. -..+.+..+..+      ..|++|+++.+. ++.-.-. ....+++|+.|+|.+|.+..  +...
T Consensus       315 ftqkL~~LdLs~N~-i~~l~~~sf~~L------~~Le~LnLs~Ns-i~~l~e~-af~~lssL~~LdLr~N~ls~~IEDaa  385 (873)
T KOG4194|consen  315 FTQKLKELDLSSNR-ITRLDEGSFRVL------SQLEELNLSHNS-IDHLAEG-AFVGLSSLHKLDLRSNELSWCIEDAA  385 (873)
T ss_pred             hcccceeEeccccc-cccCChhHHHHH------HHhhhhcccccc-hHHHHhh-HHHHhhhhhhhcCcCCeEEEEEecch
Confidence            45666666666552 123333443332      456666666443 3322111 22346889999999865442  1122


Q ss_pred             HHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCC---CHHHHH
Q 037671          132 AIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRL---PLDCFI  182 (187)
Q Consensus       132 ~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i---~~~~~~  182 (187)
                      ....++|.|++|++.+ +.+..-.- +-+++++.|++|||++|.|   -.+++.
T Consensus       386 ~~f~gl~~LrkL~l~g-Nqlk~I~k-rAfsgl~~LE~LdL~~NaiaSIq~nAFe  437 (873)
T KOG4194|consen  386 VAFNGLPSLRKLRLTG-NQLKSIPK-RAFSGLEALEHLDLGDNAIASIQPNAFE  437 (873)
T ss_pred             hhhccchhhhheeecC-ceeeecch-hhhccCcccceecCCCCcceeecccccc
Confidence            3345599999999988 46654443 3346899999999999944   445443

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.42  E-value=1.9e-07  Score=64.88  Aligned_cols=83  Identities=20%  Similarity=0.396  Sum_probs=66.0

Q ss_pred             ccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecC-CCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCc
Q 037671           89 LTSISLWGLTGITDKGVVQLISRASSLQHLNIGG-TFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLE  167 (187)
Q Consensus        89 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~  167 (187)
                      ++.++-+++. |...|+..+.. ++.++.|.+.+ ..+.|..+..++.-.|+|++|++++|+.||+.|+.-+. .+++|+
T Consensus       103 IeaVDAsds~-I~~eGle~L~~-l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~-~lknLr  179 (221)
T KOG3864|consen  103 IEAVDASDSS-IMYEGLEHLRD-LRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLL-KLKNLR  179 (221)
T ss_pred             EEEEecCCch-HHHHHHHHHhc-cchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHH-HhhhhH
Confidence            5666666665 78888877754 78888888888 57888888888888888999999999899999887775 488888


Q ss_pred             EEEeeCC
Q 037671          168 SINVWGT  174 (187)
Q Consensus       168 ~L~l~~~  174 (187)
                      .|.+.+=
T Consensus       180 ~L~l~~l  186 (221)
T KOG3864|consen  180 RLHLYDL  186 (221)
T ss_pred             HHHhcCc
Confidence            8877653

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.34  E-value=5.6e-07  Score=77.94  Aligned_cols=64  Identities=23%  Similarity=0.226  Sum_probs=29.7

Q ss_pred             cCCCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCC
Q 037671          111 RASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLP  177 (187)
Q Consensus       111 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~  177 (187)
                      .+++|+.|+++++.+....-..+. .+++|++|++++| .++......+ ..+++|+.|++++|.++
T Consensus       162 ~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~n-~l~~~~p~~l-~~l~~L~~L~L~~n~l~  225 (968)
T PLN00113        162 SFSSLKVLDLGGNVLVGKIPNSLT-NLTSLEFLTLASN-QLVGQIPREL-GQMKSLKWIYLGYNNLS  225 (968)
T ss_pred             cCCCCCEEECccCcccccCChhhh-hCcCCCeeeccCC-CCcCcCChHH-cCcCCccEEECcCCccC
Confidence            355555555555444322111222 2555666666554 2222111112 24566666666666554

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.31  E-value=1e-06  Score=76.42  Aligned_cols=31  Identities=6%  Similarity=0.194  Sum_probs=14.9

Q ss_pred             eeeecccccCHHHHHHHHhcCCCCcEEEeeec
Q 037671           35 NLSFAGWKMDDDSTARLVGYAYSLKELEISRS   66 (187)
Q Consensus        35 ~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~   66 (187)
                      .+++.+..+... ....+..+++|+.|++++|
T Consensus        73 ~L~L~~~~i~~~-~~~~~~~l~~L~~L~Ls~n  103 (968)
T PLN00113         73 SIDLSGKNISGK-ISSAIFRLPYIQTINLSNN  103 (968)
T ss_pred             EEEecCCCcccc-CChHHhCCCCCCEEECCCC
Confidence            445554443321 1223344566666666654

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.29  E-value=7.6e-06  Score=59.80  Aligned_cols=72  Identities=15%  Similarity=0.139  Sum_probs=43.7

Q ss_pred             CCCCCEEEecCCCCCHHHHHHH----HhcCCccceeeccCCCCCcHHHHHHHHhc---CCCCcEEEeeCCCCCHHHHHhh
Q 037671          112 ASSLQHLNIGGTFITDESLYAI----ANSCPQLKSIVLWSCRQVTGNGLLFLVNK---CGRLESINVWGTRLPLDCFIGL  184 (187)
Q Consensus       112 ~~~L~~L~l~~~~~~~~~~~~l----~~~~~~L~~L~l~~~~~~~~~~~~~l~~~---~~~L~~L~l~~~~i~~~~~~~L  184 (187)
                      -.+|+.+.+..|.+.++++..+    ..+|++|+.|++.. +.++-.+-..++..   ++.|++|.+.+|.++.+|....
T Consensus       184 h~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqD-Ntft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v  262 (388)
T COG5238         184 HENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQD-NTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSV  262 (388)
T ss_pred             hcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccc-cchhhhhHHHHHHHhcccchhhhccccchhhccccHHHH
Confidence            3567777777777776655443    24566777777766 45555554444432   3556777777776666665443

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.24  E-value=1.1e-06  Score=61.25  Aligned_cols=72  Identities=19%  Similarity=0.244  Sum_probs=64.4

Q ss_pred             CCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCC-CCCHHHHHhhhc
Q 037671          114 SLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGT-RLPLDCFIGLLT  186 (187)
Q Consensus       114 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~-~i~~~~~~~L~~  186 (187)
                      .++.++=++..+..+|+..+-. ++.++.|.+..|.++.|.+++.++...|+|+.|++++| .||+.|+..|..
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~-l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~  174 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRD-LRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLK  174 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhc-cchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHH
Confidence            3678888888999999988765 89999999999999999999999998899999999999 999999877653

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.23  E-value=4.6e-07  Score=48.71  Aligned_cols=33  Identities=36%  Similarity=0.559  Sum_probs=27.0

Q ss_pred             CccccccchhHHHHHHHhhHHHHHHh-hhhhcccc
Q 037671            1 FLFVFVIPFVCLLRVSSVCKKWKLGV-KQSLARRK   34 (187)
Q Consensus         1 ~I~~~l~~~~~~~~~~~vck~w~~~~-~~~l~~~~   34 (187)
                      .||+||+ .+|+.++++|||+|++++ .+.+|++.
T Consensus        11 ~If~~L~-~~dl~~~~~vcr~w~~~~~~~~lW~~~   44 (47)
T PF12937_consen   11 EIFSYLD-PRDLLRLSLVCRRWRRIANDNSLWRRL   44 (47)
T ss_dssp             HHHTTS--HHHHHHHTTSSHHHHHHHTCCCHHHHH
T ss_pred             HHHhcCC-HHHHHHHHHHHHHHHHHHCChhhhhhh
Confidence            3899999 599999999999999987 44777653

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.91  E-value=4.5e-05  Score=55.89  Aligned_cols=88  Identities=20%  Similarity=0.241  Sum_probs=66.2

Q ss_pred             CCccEEEecCCCCCCHHHHHHHHh----cCCCCCEEEecCCCCCHHHHHHHHh---cCCccceeeccCCCCCcHHHHHHH
Q 037671           87 SNLTSISLWGLTGITDKGVVQLIS----RASSLQHLNIGGTFITDESLYAIAN---SCPQLKSIVLWSCRQVTGNGLLFL  159 (187)
Q Consensus        87 ~~L~~L~l~~~~~~~~~~~~~~~~----~~~~L~~L~l~~~~~~~~~~~~l~~---~~~~L~~L~l~~~~~~~~~~~~~l  159 (187)
                      .+|+.+.+..+ .|.+.|+.+++.    .+.+|+.|++.+|.++..+-..++.   .++.|++|.++.| .++..|...+
T Consensus       185 ~~lk~vki~qN-gIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDC-lls~~G~~~v  262 (388)
T COG5238         185 ENLKEVKIQQN-GIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDC-LLSNEGVKSV  262 (388)
T ss_pred             cCceeEEeeec-CcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccch-hhccccHHHH
Confidence            46777777655 488887766554    5899999999999999887766654   3566899999998 7777776666


Q ss_pred             Hhc-----CCCCcEEEeeCCCC
Q 037671          160 VNK-----CGRLESINVWGTRL  176 (187)
Q Consensus       160 ~~~-----~~~L~~L~l~~~~i  176 (187)
                      ...     .|+|..|...+|.+
T Consensus       263 ~~~f~e~~~p~l~~L~~~Yne~  284 (388)
T COG5238         263 LRRFNEKFVPNLMPLPGDYNER  284 (388)
T ss_pred             HHHhhhhcCCCccccccchhhh
Confidence            543     38888887777744

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=97.89  E-value=5.5e-06  Score=69.30  Aligned_cols=124  Identities=19%  Similarity=0.206  Sum_probs=69.0

Q ss_pred             eeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCC
Q 037671           35 NLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASS  114 (187)
Q Consensus        35 ~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  114 (187)
                      .+.+.++++++..++. +.+.++|+.|++++|.. ..+++..+..      .+.|++|++|++. ++.-.  .-...++.
T Consensus       363 ~LylanN~Ltd~c~p~-l~~~~hLKVLhLsyNrL-~~fpas~~~k------le~LeeL~LSGNk-L~~Lp--~tva~~~~  431 (1081)
T KOG0618|consen  363 ELYLANNHLTDSCFPV-LVNFKHLKVLHLSYNRL-NSFPASKLRK------LEELEELNLSGNK-LTTLP--DTVANLGR  431 (1081)
T ss_pred             HHHHhcCcccccchhh-hccccceeeeeeccccc-ccCCHHHHhc------hHHhHHHhcccch-hhhhh--HHHHhhhh
Confidence            4566777777766654 45678999999998731 1344554433      4778899998875 33221  11223555


Q ss_pred             CCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCC
Q 037671          115 LQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGT  174 (187)
Q Consensus       115 L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~  174 (187)
                      |++|..-+|.+...  -.++ ..|.|+.+|++. ++++...+..... .|+|++||++||
T Consensus       432 L~tL~ahsN~l~~f--Pe~~-~l~qL~~lDlS~-N~L~~~~l~~~~p-~p~LkyLdlSGN  486 (1081)
T KOG0618|consen  432 LHTLRAHSNQLLSF--PELA-QLPQLKVLDLSC-NNLSEVTLPEALP-SPNLKYLDLSGN  486 (1081)
T ss_pred             hHHHhhcCCceeec--hhhh-hcCcceEEeccc-chhhhhhhhhhCC-CcccceeeccCC
Confidence            56555555433210  0122 245566666653 4555444433222 256666666666

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=97.87  E-value=1.8e-05  Score=36.72  Aligned_cols=25  Identities=36%  Similarity=0.772  Sum_probs=16.9

Q ss_pred             CCccceeeccCCCCCcHHHHHHHHh
Q 037671          137 CPQLKSIVLWSCRQVTGNGLLFLVN  161 (187)
Q Consensus       137 ~~~L~~L~l~~~~~~~~~~~~~l~~  161 (187)
                      ||+|++|++++|..++|.++..+++
T Consensus         1 c~~L~~L~l~~C~~itD~gl~~l~~   25 (26)
T smart00367        1 CPNLRELDLSGCTNITDEGLQALAK   25 (26)
T ss_pred             CCCCCEeCCCCCCCcCHHHHHHHhc
Confidence            5667777777777777777666653

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=97.80  E-value=3.2e-06  Score=67.69  Aligned_cols=62  Identities=18%  Similarity=0.181  Sum_probs=34.5

Q ss_pred             CCCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCC
Q 037671          112 ASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRL  176 (187)
Q Consensus       112 ~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i  176 (187)
                      ..+++.|+|++|.+++-+...+.. +..|-+|.++. +.++.-.. ..++.+|+|+.|+|..|+|
T Consensus       172 ~~ni~~L~La~N~It~l~~~~F~~-lnsL~tlkLsr-NrittLp~-r~Fk~L~~L~~LdLnrN~i  233 (873)
T KOG4194|consen  172 KVNIKKLNLASNRITTLETGHFDS-LNSLLTLKLSR-NRITTLPQ-RSFKRLPKLESLDLNRNRI  233 (873)
T ss_pred             CCCceEEeeccccccccccccccc-cchheeeeccc-CcccccCH-HHhhhcchhhhhhccccce
Confidence            356777777777666543333322 33566666665 35554442 2334566666666666644

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=97.71  E-value=3.1e-05  Score=39.97  Aligned_cols=30  Identities=17%  Similarity=0.274  Sum_probs=25.0

Q ss_pred             CccccccchhHHHHHHHhhHHHHHHhh-hhhc
Q 037671            1 FLFVFVIPFVCLLRVSSVCKKWKLGVK-QSLA   31 (187)
Q Consensus         1 ~I~~~l~~~~~~~~~~~vck~w~~~~~-~~l~   31 (187)
                      .||.|++ ..|+..+++|||+|+.++. +.+|
T Consensus         8 ~I~~~l~-~~d~~~~~~vc~~~~~~~~~~~~~   38 (41)
T smart00256        8 EILSKLP-PKDLLRLRKVSRRWRSLIDSHDFW   38 (41)
T ss_pred             HHHHcCC-HHHHHHHHHHHHHHHHHhcChhhh
Confidence            3799999 4999999999999999774 3454

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.68  E-value=3.3e-06  Score=47.99  Aligned_cols=61  Identities=15%  Similarity=0.167  Sum_probs=37.4

Q ss_pred             CCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCC
Q 037671          113 SSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRL  176 (187)
Q Consensus       113 ~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i  176 (187)
                      |+|+.|+++++.++.-. ......+++|++|+++++ .++.-.- ..+.++++|++|++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~-~~~f~~l~~L~~L~l~~N-~l~~i~~-~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIP-PDSFSNLPNLETLDLSNN-NLTSIPP-DAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEEC-TTTTTTGTTESEEEETSS-SESEEET-TTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccC-HHHHcCCCCCCEeEccCC-ccCccCH-HHHcCCCCCCEEeCcCCcC
Confidence            56777888776555211 122345777888888764 5543332 2345678888888888764

...

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.65  E-value=2.8e-05  Score=57.65  Aligned_cols=102  Identities=11%  Similarity=0.183  Sum_probs=60.1

Q ss_pred             cccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCC
Q 037671           70 CQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCR  149 (187)
Q Consensus        70 ~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~  149 (187)
                      +.+...|-... ++..+.+++++++.++.-.....+..+.+.+|.|+.|+++.|.+... +..+.--..+|++|.+++ .
T Consensus        55 ~~id~~gd~~~-~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~-I~~lp~p~~nl~~lVLNg-T  131 (418)
T KOG2982|consen   55 SIIDNEGDVML-FGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD-IKSLPLPLKNLRVLVLNG-T  131 (418)
T ss_pred             CCCCcchhHHH-HHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCc-cccCcccccceEEEEEcC-C
Confidence            44544443221 34556777777776665333455666667777777777777666543 222211134577777766 4


Q ss_pred             CCcHHHHHHHHhcCCCCcEEEeeCC
Q 037671          150 QVTGNGLLFLVNKCGRLESINVWGT  174 (187)
Q Consensus       150 ~~~~~~~~~l~~~~~~L~~L~l~~~  174 (187)
                      +++......+....|.+.+|.+++|
T Consensus       132 ~L~w~~~~s~l~~lP~vtelHmS~N  156 (418)
T KOG2982|consen  132 GLSWTQSTSSLDDLPKVTELHMSDN  156 (418)
T ss_pred             CCChhhhhhhhhcchhhhhhhhccc
Confidence            6666666666666777777777766

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.60  E-value=4.1e-05  Score=56.91  Aligned_cols=14  Identities=29%  Similarity=0.368  Sum_probs=8.2

Q ss_pred             CCCCcEEEeeCCCC
Q 037671          163 CGRLESINVWGTRL  176 (187)
Q Consensus       163 ~~~L~~L~l~~~~i  176 (187)
                      +|.|+++.+.+|++
T Consensus       398 LPCLE~l~L~~NPl  411 (490)
T KOG1259|consen  398 LPCLETLRLTGNPL  411 (490)
T ss_pred             ccHHHHHhhcCCCc
Confidence            55666666666644

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.49  E-value=0.00014  Score=54.12  Aligned_cols=82  Identities=15%  Similarity=0.197  Sum_probs=44.4

Q ss_pred             ceeeecccccC-HHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcC
Q 037671           34 KNLSFAGWKMD-DDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRA  112 (187)
Q Consensus        34 ~~l~~~~~~l~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  112 (187)
                      ++++++++.+. ...+..+.+.+|.|+.|++++|+.+..+.     .+  .....+|+.+.+.+.. ++......+.+..
T Consensus        74 ~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~-----~l--p~p~~nl~~lVLNgT~-L~w~~~~s~l~~l  145 (418)
T KOG2982|consen   74 KELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK-----SL--PLPLKNLRVLVLNGTG-LSWTQSTSSLDDL  145 (418)
T ss_pred             hhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc-----cC--cccccceEEEEEcCCC-CChhhhhhhhhcc
Confidence            34555555544 23455666677777777777663221111     11  0123566666665443 6666666666666


Q ss_pred             CCCCEEEecCC
Q 037671          113 SSLQHLNIGGT  123 (187)
Q Consensus       113 ~~L~~L~l~~~  123 (187)
                      |.++.|+++.|
T Consensus       146 P~vtelHmS~N  156 (418)
T KOG2982|consen  146 PKVTELHMSDN  156 (418)
T ss_pred             hhhhhhhhccc
Confidence            66666666654

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=97.45  E-value=7.3e-05  Score=33.89  Aligned_cols=23  Identities=13%  Similarity=0.157  Sum_probs=15.9

Q ss_pred             CCCCcEEEeeCCCCCHHHHHhhh
Q 037671          163 CGRLESINVWGTRLPLDCFIGLL  185 (187)
Q Consensus       163 ~~~L~~L~l~~~~i~~~~~~~L~  185 (187)
                      +++|++|++++|.|+++|+..|.
T Consensus         1 ~~~L~~L~l~~n~i~~~g~~~l~   23 (24)
T PF13516_consen    1 NPNLETLDLSNNQITDEGASALA   23 (24)
T ss_dssp             -TT-SEEE-TSSBEHHHHHHHHH
T ss_pred             CCCCCEEEccCCcCCHHHHHHhC
Confidence            46788888888888888887764

...

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=97.45  E-value=4.7e-05  Score=40.90  Aligned_cols=27  Identities=30%  Similarity=0.406  Sum_probs=22.0

Q ss_pred             CccccccchhHHHHHHHhhHHHHHHhhh
Q 037671            1 FLFVFVIPFVCLLRVSSVCKKWKLGVKQ   28 (187)
Q Consensus         1 ~I~~~l~~~~~~~~~~~vck~w~~~~~~   28 (187)
                      +||.|++ +.+++++++|||.|++++..
T Consensus        13 ~Il~~l~-~~~~~~l~~vsk~~~~~~~~   39 (48)
T PF00646_consen   13 EILSYLD-PKDLLRLSLVSKRWRSLVDS   39 (48)
T ss_dssp             HHHHTS--HHHHHHHCTT-HHHHHHHTT
T ss_pred             HHHHHCc-HHHHHHHHHHhhHHHHHHcC
Confidence            4899999 69999999999999997744

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.42  E-value=0.00019  Score=37.84  Aligned_cols=38  Identities=18%  Similarity=0.147  Sum_probs=22.9

Q ss_pred             CccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCCH
Q 037671          138 PQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPL  178 (187)
Q Consensus       138 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~  178 (187)
                      |+|++|+++++ .+++-.  .....+++|+.|++++|++++
T Consensus         1 ~~L~~L~l~~N-~i~~l~--~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    1 KNLEELDLSNN-QITDLP--PELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             TT-SEEEETSS-S-SSHG--GHGTTCTTSSEEEETSSCCSB
T ss_pred             CcceEEEccCC-CCcccC--chHhCCCCCCEEEecCCCCCC
Confidence            45777777773 555432  223467778888887777763

...

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.41  E-value=3.4e-05  Score=56.67  Aligned_cols=110  Identities=19%  Similarity=0.292  Sum_probs=63.7

Q ss_pred             CCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCH-HHHHHHHh
Q 037671           57 SLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITD-ESLYAIAN  135 (187)
Q Consensus        57 ~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~  135 (187)
                      +++.|+.    |||.++|-.+-     ...+.|+.|.|+-+. |+.  +..+ ..|.+|+.|-|..|.|.+ +.+..+ .
T Consensus        20 ~vkKLNc----wg~~L~DIsic-----~kMp~lEVLsLSvNk-Iss--L~pl-~rCtrLkElYLRkN~I~sldEL~YL-k   85 (388)
T KOG2123|consen   20 NVKKLNC----WGCGLDDISIC-----EKMPLLEVLSLSVNK-ISS--LAPL-QRCTRLKELYLRKNCIESLDELEYL-K   85 (388)
T ss_pred             Hhhhhcc----cCCCccHHHHH-----HhcccceeEEeeccc-ccc--chhH-HHHHHHHHHHHHhcccccHHHHHHH-h
Confidence            4555554    46677765542     336778888887443 433  2222 347788888887776665 234333 3


Q ss_pred             cCCccceeeccCCCCCcHHH---HHHHHhcCCCCcEEEeeCCCCCHHHHH
Q 037671          136 SCPQLKSIVLWSCRQVTGNG---LLFLVNKCGRLESINVWGTRLPLDCFI  182 (187)
Q Consensus       136 ~~~~L~~L~l~~~~~~~~~~---~~~l~~~~~~L~~L~l~~~~i~~~~~~  182 (187)
                      .+|+|+.|.|-.++.....|   -..+...+|+|+.||=.  .+|.+.++
T Consensus        86 nlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv--~VteeEle  133 (388)
T KOG2123|consen   86 NLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNV--PVTEEELE  133 (388)
T ss_pred             cCchhhhHhhccCCcccccchhHHHHHHHHcccchhccCc--cccHHHHH
Confidence            47888888886544433332   23345667888877632  55555443

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=97.40  E-value=0.00023  Score=32.88  Aligned_cols=25  Identities=40%  Similarity=0.554  Sum_probs=17.1

Q ss_pred             CCCccEEEecCCCCCCHHHHHHHHh
Q 037671           86 ISNLTSISLWGLTGITDKGVVQLIS  110 (187)
Q Consensus        86 ~~~L~~L~l~~~~~~~~~~~~~~~~  110 (187)
                      |++|++|++++|..+++.++..+.+
T Consensus         1 c~~L~~L~l~~C~~itD~gl~~l~~   25 (26)
T smart00367        1 CPNLRELDLSGCTNITDEGLQALAK   25 (26)
T ss_pred             CCCCCEeCCCCCCCcCHHHHHHHhc
Confidence            4667777777777777777766543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.28  E-value=0.00016  Score=53.86  Aligned_cols=33  Identities=24%  Similarity=0.407  Sum_probs=15.0

Q ss_pred             CCCEEEecCCCCCH-HHHHHHHhcCCccceeeccC
Q 037671          114 SLQHLNIGGTFITD-ESLYAIANSCPQLKSIVLWS  147 (187)
Q Consensus       114 ~L~~L~l~~~~~~~-~~~~~l~~~~~~L~~L~l~~  147 (187)
                      +|..|++.+|.+.. +.+..|+ .+|.|+++.+.+
T Consensus       375 SLvnLDl~~N~Ie~ldeV~~IG-~LPCLE~l~L~~  408 (490)
T KOG1259|consen  375 SLVNLDLSSNQIEELDEVNHIG-NLPCLETLRLTG  408 (490)
T ss_pred             hheeccccccchhhHHHhcccc-cccHHHHHhhcC
Confidence            34445555544433 2222222 355666666654

>PLN03150 hypothetical protein; Provisional

Probab=97.27  E-value=0.0007  Score=56.28  Aligned_cols=85  Identities=18%  Similarity=0.166  Sum_probs=44.4

Q ss_pred             CCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCC
Q 037671           86 ISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGR  165 (187)
Q Consensus        86 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~  165 (187)
                      +++|+.|+++++. +... +......+++|+.|++++|.++...-..+. .+++|+.|+++++ .++...-..+.....+
T Consensus       441 L~~L~~L~Ls~N~-l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~-~L~~L~~L~Ls~N-~l~g~iP~~l~~~~~~  516 (623)
T PLN03150        441 LRHLQSINLSGNS-IRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLG-QLTSLRILNLNGN-SLSGRVPAALGGRLLH  516 (623)
T ss_pred             CCCCCEEECCCCc-ccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHh-cCCCCCEEECcCC-cccccCChHHhhcccc
Confidence            5677777776654 3321 222234467777777777666543222333 4667777777664 3432222223322334


Q ss_pred             CcEEEeeCC
Q 037671          166 LESINVWGT  174 (187)
Q Consensus       166 L~~L~l~~~  174 (187)
                      +..+++.+|
T Consensus       517 ~~~l~~~~N  525 (623)
T PLN03150        517 RASFNFTDN  525 (623)
T ss_pred             CceEEecCC
Confidence            556666655

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.19  E-value=0.00012  Score=41.53  Aligned_cols=37  Identities=19%  Similarity=0.257  Sum_probs=17.5

Q ss_pred             CCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCC
Q 037671           86 ISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTF  124 (187)
Q Consensus        86 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  124 (187)
                      +++|+.|+++++. ++.-.- .....+++|++|++++|.
T Consensus        24 l~~L~~L~l~~N~-l~~i~~-~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen   24 LPNLETLDLSNNN-LTSIPP-DAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             GTTESEEEETSSS-ESEEET-TTTTTSTTESEEEETSSS
T ss_pred             CCCCCEeEccCCc-cCccCH-HHHcCCCCCCEEeCcCCc
Confidence            4556666665443 322111 122345566666665543

...

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=97.16  E-value=9e-05  Score=59.27  Aligned_cols=17  Identities=0%  Similarity=-0.025  Sum_probs=8.0

Q ss_pred             cEEEeeCCCCCHHHHHh
Q 037671          167 ESINVWGTRLPLDCFIG  183 (187)
Q Consensus       167 ~~L~l~~~~i~~~~~~~  183 (187)
                      +.+++++|.+++.+...
T Consensus       265 ~~l~l~~nsi~~~~~~~  281 (478)
T KOG4308|consen  265 RVLDLSRNSITEKGVRD  281 (478)
T ss_pred             hhhhhhcCCccccchHH
Confidence            44444444444444433

>PLN03210 Resistant to P

Probab=97.14  E-value=0.00057  Score=60.67  Aligned_cols=80  Identities=18%  Similarity=0.267  Sum_probs=50.1

Q ss_pred             CCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCC
Q 037671           86 ISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGR  165 (187)
Q Consensus        86 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~  165 (187)
                      +++|+.|++++|..+..     +....++|+.|+++++.++.  +..-...+++|+.|++++|+.+..-..  -...+++
T Consensus       824 L~sL~~L~Ls~c~~L~~-----~p~~~~nL~~L~Ls~n~i~~--iP~si~~l~~L~~L~L~~C~~L~~l~~--~~~~L~~  894 (1153)
T PLN03210        824 LESLESLDLSGCSRLRT-----FPDISTNISDLNLSRTGIEE--VPWWIEKFSNLSFLDMNGCNNLQRVSL--NISKLKH  894 (1153)
T ss_pred             ccccCEEECCCCCcccc-----ccccccccCEeECCCCCCcc--ChHHHhcCCCCCEEECCCCCCcCccCc--ccccccC
Confidence            45667777766653321     11123578888888866652  111224588899999999887765332  2345678


Q ss_pred             CcEEEeeCC
Q 037671          166 LESINVWGT  174 (187)
Q Consensus       166 L~~L~l~~~  174 (187)
                      |+.+++++|
T Consensus       895 L~~L~l~~C  903 (1153)
T PLN03210        895 LETVDFSDC  903 (1153)
T ss_pred             CCeeecCCC
Confidence            888888887

syringae 6; Provisional

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.09  E-value=9.3e-05  Score=53.60  Aligned_cols=88  Identities=20%  Similarity=0.246  Sum_probs=60.1

Q ss_pred             ccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCH-HHHHHHHhcCCccceeeccCCCC--CcHHHHHHHH
Q 037671           84 KCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITD-ESLYAIANSCPQLKSIVLWSCRQ--VTGNGLLFLV  160 (187)
Q Consensus        84 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~~L~~L~l~~~~~--~~~~~~~~l~  160 (187)
                      ...|+|+.|.++.+..-...++..++..+|+|++|.+++|.+.+ ..+..+. .+++|..|++..|.-  +.+. =+.++
T Consensus        62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~-~l~nL~~Ldl~n~~~~~l~dy-re~vf  139 (260)
T KOG2739|consen   62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLK-ELENLKSLDLFNCSVTNLDDY-REKVF  139 (260)
T ss_pred             CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhh-hhcchhhhhcccCCccccccH-HHHHH
Confidence            33678899999866444555677777878999999999988875 2233333 366788888887732  3332 35566


Q ss_pred             hcCCCCcEEEeeC
Q 037671          161 NKCGRLESINVWG  173 (187)
Q Consensus       161 ~~~~~L~~L~l~~  173 (187)
                      .-+|+|+.||-.+
T Consensus       140 ~ll~~L~~LD~~d  152 (260)
T KOG2739|consen  140 LLLPSLKYLDGCD  152 (260)
T ss_pred             HHhhhhccccccc
Confidence            6778888886543

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=97.00  E-value=0.00031  Score=56.24  Aligned_cols=124  Identities=22%  Similarity=0.243  Sum_probs=86.4

Q ss_pred             CCCCcEEEeeeccCCcccchhhhhhhhhh-----ccCCCccEEEecCCCCCCHHHHHHHHhc---CCC-CCEEEecCCCC
Q 037671           55 AYSLKELEISRSRWGCQITDNGLYRMSFA-----KCISNLTSISLWGLTGITDKGVVQLISR---ASS-LQHLNIGGTFI  125 (187)
Q Consensus        55 ~~~L~~L~l~~~~~~~~~~~~~l~~l~~~-----~~~~~L~~L~l~~~~~~~~~~~~~~~~~---~~~-L~~L~l~~~~~  125 (187)
                      ...++.++++.|    .+.+.+...++.+     ....+++.|.+.+|. ++...+..+...   .+. +..+++..+.+
T Consensus       171 ~~~l~~l~l~~n----~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~-~t~~~c~~l~~~l~~~~~~~~el~l~~n~l  245 (478)
T KOG4308|consen  171 NEHLTELDLSLN----GLIELGLLVLSQALESAASPLSSLETLKLSRCG-VTSSSCALLDEVLASGESLLRELDLASNKL  245 (478)
T ss_pred             ccchhHHHHHhc----ccchhhhHHHhhhhhhhhcccccHHHHhhhhcC-cChHHHHHHHHHHhccchhhHHHHHHhcCc
Confidence            455677777765    3334444443321     134568888888886 777766655553   334 55588888999


Q ss_pred             CHHHHHHHHhcCCcc----ceeeccCCCCCcHHHHHHHHh---cCCCCcEEEeeCCCCCHHHHHhh
Q 037671          126 TDESLYAIANSCPQL----KSIVLWSCRQVTGNGLLFLVN---KCGRLESINVWGTRLPLDCFIGL  184 (187)
Q Consensus       126 ~~~~~~~l~~~~~~L----~~L~l~~~~~~~~~~~~~l~~---~~~~L~~L~l~~~~i~~~~~~~L  184 (187)
                      .|.++..+...++.+    +++++..| .+++.+...+++   .|+.++.+.++.|.+++.+...+
T Consensus       246 ~d~g~~~L~~~l~~~~~~l~~l~l~~n-si~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~  310 (478)
T KOG4308|consen  246 GDVGVEKLLPCLSVLSETLRVLDLSRN-SITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELL  310 (478)
T ss_pred             chHHHHHHHHHhcccchhhhhhhhhcC-CccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHH
Confidence            999888887766554    89999885 788877666654   46789999999999998886654

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=96.96  E-value=0.00016  Score=60.95  Aligned_cols=100  Identities=17%  Similarity=0.170  Sum_probs=60.7

Q ss_pred             ccchhhhhhhhhhccCCCccEEEecCCC--CCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCC
Q 037671           71 QITDNGLYRMSFAKCISNLTSISLWGLT--GITDKGVVQLISRASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSC  148 (187)
Q Consensus        71 ~~~~~~l~~l~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~  148 (187)
                      .++|..+..+   ..+++|+.|+++++.  .++...+    .+++.|+.|+++||.++.-. ..++. |+.|++|...+ 
T Consensus       370 ~Ltd~c~p~l---~~~~hLKVLhLsyNrL~~fpas~~----~kle~LeeL~LSGNkL~~Lp-~tva~-~~~L~tL~ahs-  439 (1081)
T KOG0618|consen  370 HLTDSCFPVL---VNFKHLKVLHLSYNRLNSFPASKL----RKLEELEELNLSGNKLTTLP-DTVAN-LGRLHTLRAHS-  439 (1081)
T ss_pred             cccccchhhh---ccccceeeeeecccccccCCHHHH----hchHHhHHHhcccchhhhhh-HHHHh-hhhhHHHhhcC-
Confidence            5566655544   446777777777663  2333322    34677777777776655322 23332 66777777765 


Q ss_pred             CCCcHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHh
Q 037671          149 RQVTGNGLLFLVNKCGRLESINVWGTRLPLDCFIG  183 (187)
Q Consensus       149 ~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~  183 (187)
                      +.+....  .++ ..|.|+.+|++.|.++.-.+.+
T Consensus       440 N~l~~fP--e~~-~l~qL~~lDlS~N~L~~~~l~~  471 (1081)
T KOG0618|consen  440 NQLLSFP--ELA-QLPQLKVLDLSCNNLSEVTLPE  471 (1081)
T ss_pred             Cceeech--hhh-hcCcceEEecccchhhhhhhhh
Confidence            3443322  343 4789999999999888766544

>PLN03150 hypothetical protein; Provisional

Probab=96.92  E-value=0.0015  Score=54.35  Aligned_cols=84  Identities=20%  Similarity=0.179  Sum_probs=57.6

Q ss_pred             ccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcE
Q 037671           89 LTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLES  168 (187)
Q Consensus        89 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~  168 (187)
                      ++.|+++++. +....-.. ...+++|+.|+|++|.+....-..+ ..++.|+.|+++++ .++...-..+ ..+++|+.
T Consensus       420 v~~L~L~~n~-L~g~ip~~-i~~L~~L~~L~Ls~N~l~g~iP~~~-~~l~~L~~LdLs~N-~lsg~iP~~l-~~L~~L~~  494 (623)
T PLN03150        420 IDGLGLDNQG-LRGFIPND-ISKLRHLQSINLSGNSIRGNIPPSL-GSITSLEVLDLSYN-SFNGSIPESL-GQLTSLRI  494 (623)
T ss_pred             EEEEECCCCC-ccccCCHH-HhCCCCCCEEECCCCcccCcCChHH-hCCCCCCEEECCCC-CCCCCCchHH-hcCCCCCE
Confidence            6777787664 43322222 3458999999999987764322233 45899999999985 6654333333 46899999


Q ss_pred             EEeeCCCCC
Q 037671          169 INVWGTRLP  177 (187)
Q Consensus       169 L~l~~~~i~  177 (187)
                      |++++|.++
T Consensus       495 L~Ls~N~l~  503 (623)
T PLN03150        495 LNLNGNSLS  503 (623)
T ss_pred             EECcCCccc
Confidence            999999765

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=96.90  E-value=0.00084  Score=30.28  Aligned_cols=21  Identities=33%  Similarity=0.461  Sum_probs=7.9

Q ss_pred             CccceeeccCCCCCcHHHHHHH
Q 037671          138 PQLKSIVLWSCRQVTGNGLLFL  159 (187)
Q Consensus       138 ~~L~~L~l~~~~~~~~~~~~~l  159 (187)
                      ++|++|++++| .++++++..+
T Consensus         2 ~~L~~L~l~~n-~i~~~g~~~l   22 (24)
T PF13516_consen    2 PNLETLDLSNN-QITDEGASAL   22 (24)
T ss_dssp             TT-SEEE-TSS-BEHHHHHHHH
T ss_pred             CCCCEEEccCC-cCCHHHHHHh
Confidence            33444444443 3444444433

...

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=96.88  E-value=0.0013  Score=30.97  Aligned_cols=23  Identities=13%  Similarity=0.111  Sum_probs=19.1

Q ss_pred             CCCcEEEeeCCCCCHHHHHhhhc
Q 037671          164 GRLESINVWGTRLPLDCFIGLLT  186 (187)
Q Consensus       164 ~~L~~L~l~~~~i~~~~~~~L~~  186 (187)
                      ++|++|+|++|.++++|...|..
T Consensus         2 ~~L~~LdL~~N~i~~~G~~~L~~   24 (28)
T smart00368        2 PSLRELDLSNNKLGDEGARALAE   24 (28)
T ss_pred             CccCEEECCCCCCCHHHHHHHHH
Confidence            57899999999999999887753

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=96.86  E-value=5.1e-05  Score=62.52  Aligned_cols=12  Identities=25%  Similarity=0.379  Sum_probs=5.7

Q ss_pred             CCCCcEEEeeec
Q 037671           55 AYSLKELEISRS   66 (187)
Q Consensus        55 ~~~L~~L~l~~~   66 (187)
                      .+.+++|+|++|
T Consensus       186 l~ale~LnLshN  197 (1096)
T KOG1859|consen  186 LPALESLNLSHN  197 (1096)
T ss_pred             HHHhhhhccchh
Confidence            344455555544

>PLN03210 Resistant to P

Probab=96.82  E-value=0.0011  Score=58.97  Aligned_cols=81  Identities=14%  Similarity=0.198  Sum_probs=39.7

Q ss_pred             CCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCC-CCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCC
Q 037671           86 ISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGT-FITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCG  164 (187)
Q Consensus        86 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~  164 (187)
                      +++|+.|++++|..+..  +......+++|+.|+++++ .++.  +.. ...++.|+.|++++|..+.     .+....+
T Consensus       656 l~~Le~L~L~~c~~L~~--lp~si~~L~~L~~L~L~~c~~L~~--Lp~-~i~l~sL~~L~Lsgc~~L~-----~~p~~~~  725 (1153)
T PLN03210        656 ATNLETLKLSDCSSLVE--LPSSIQYLNKLEDLDMSRCENLEI--LPT-GINLKSLYRLNLSGCSRLK-----SFPDIST  725 (1153)
T ss_pred             CCcccEEEecCCCCccc--cchhhhccCCCCEEeCCCCCCcCc--cCC-cCCCCCCCEEeCCCCCCcc-----ccccccC
Confidence            46666777766643221  2222344566777777663 2221  000 0135667777776664332     1222234


Q ss_pred             CCcEEEeeCCCC
Q 037671          165 RLESINVWGTRL  176 (187)
Q Consensus       165 ~L~~L~l~~~~i  176 (187)
                      +|+.|++++|.+
T Consensus       726 nL~~L~L~~n~i  737 (1153)
T PLN03210        726 NISWLDLDETAI  737 (1153)
T ss_pred             CcCeeecCCCcc
Confidence            566666666643

syringae 6; Provisional

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=96.81  E-value=0.00034  Score=57.20  Aligned_cols=16  Identities=19%  Similarity=0.355  Sum_probs=9.6

Q ss_pred             CCCCcEEEeeCCCCCH
Q 037671          163 CGRLESINVWGTRLPL  178 (187)
Q Consensus       163 ~~~L~~L~l~~~~i~~  178 (187)
                      .++|+.|+|++|+|++
T Consensus       244 l~~LrrLNLS~N~ite  259 (1255)
T KOG0444|consen  244 LRNLRRLNLSGNKITE  259 (1255)
T ss_pred             hhhhheeccCcCceee
Confidence            3556666666666553

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=96.70  E-value=0.0021  Score=33.81  Aligned_cols=32  Identities=28%  Similarity=0.425  Sum_probs=12.2

Q ss_pred             CCCEEEecCCCCCHHHHHHHHhcCCccceeeccC
Q 037671          114 SLQHLNIGGTFITDESLYAIANSCPQLKSIVLWS  147 (187)
Q Consensus       114 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~  147 (187)
                      +|++|+++++.+++  +......+++|+.|++++
T Consensus         2 ~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~   33 (44)
T PF12799_consen    2 NLEELDLSNNQITD--LPPELSNLPNLETLNLSN   33 (44)
T ss_dssp             T-SEEEETSSS-SS--HGGHGTTCTTSSEEEETS
T ss_pred             cceEEEccCCCCcc--cCchHhCCCCCCEEEecC
Confidence            34444444444442  222122344444444444

...

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=96.68  E-value=0.00024  Score=58.04  Aligned_cols=72  Identities=19%  Similarity=0.246  Sum_probs=44.9

Q ss_pred             cCCCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCC--CHHHHHhh
Q 037671          111 RASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRL--PLDCFIGL  184 (187)
Q Consensus       111 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i--~~~~~~~L  184 (187)
                      ...+|++|+|++|.+....++.+. ++..|+.|.+++. .-+-..+..-...+.+|+.+|++.|.+  -++++-.+
T Consensus       171 RL~~LqtL~Ls~NPL~hfQLrQLP-smtsL~vLhms~T-qRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l  244 (1255)
T KOG0444|consen  171 RLSMLQTLKLSNNPLNHFQLRQLP-SMTSLSVLHMSNT-QRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKL  244 (1255)
T ss_pred             HHhhhhhhhcCCChhhHHHHhcCc-cchhhhhhhcccc-cchhhcCCCchhhhhhhhhccccccCCCcchHHHhhh
Confidence            345788889999888776665443 2455667777652 333333322234556899999998844  46665444

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.65  E-value=0.00053  Score=50.61  Aligned_cols=109  Identities=21%  Similarity=0.178  Sum_probs=73.5

Q ss_pred             ceeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCC
Q 037671           34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRAS  113 (187)
Q Consensus        34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  113 (187)
                      +.+++.|+.++|.+   +.+.++.|+.|.|+-|    .++  .+..+   ..|.+|++|.|-.+. |++..-....+..|
T Consensus        22 kKLNcwg~~L~DIs---ic~kMp~lEVLsLSvN----kIs--sL~pl---~rCtrLkElYLRkN~-I~sldEL~YLknlp   88 (388)
T KOG2123|consen   22 KKLNCWGCGLDDIS---ICEKMPLLEVLSLSVN----KIS--SLAPL---QRCTRLKELYLRKNC-IESLDELEYLKNLP   88 (388)
T ss_pred             hhhcccCCCccHHH---HHHhcccceeEEeecc----ccc--cchhH---HHHHHHHHHHHHhcc-cccHHHHHHHhcCc
Confidence            56788888877644   4567889999988865    332  22232   458889999987554 77766666777889


Q ss_pred             CCCEEEecCCCCCH----HHHHHHHhcCCccceeeccCCCCCcHHHHHH
Q 037671          114 SLQHLNIGGTFITD----ESLYAIANSCPQLKSIVLWSCRQVTGNGLLF  158 (187)
Q Consensus       114 ~L~~L~l~~~~~~~----~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~  158 (187)
                      +|++|=|..|.-..    ..-..+...+|+|++|+=   ..++.+.++.
T Consensus        89 sLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn---v~VteeEle~  134 (388)
T KOG2123|consen   89 SLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDN---VPVTEEELEE  134 (388)
T ss_pred             hhhhHhhccCCcccccchhHHHHHHHHcccchhccC---ccccHHHHHH
Confidence            99999887743222    222345566899998875   3566666554

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=96.40  E-value=0.0061  Score=28.58  Aligned_cols=23  Identities=30%  Similarity=0.456  Sum_probs=13.3

Q ss_pred             CCCCEEEecCCCCCHHHHHHHHh
Q 037671          113 SSLQHLNIGGTFITDESLYAIAN  135 (187)
Q Consensus       113 ~~L~~L~l~~~~~~~~~~~~l~~  135 (187)
                      ++|+.|+|++|.+++++...++.
T Consensus         2 ~~L~~LdL~~N~i~~~G~~~L~~   24 (28)
T smart00368        2 PSLRELDLSNNKLGDEGARALAE   24 (28)
T ss_pred             CccCEEECCCCCCCHHHHHHHHH
Confidence            35566666666666666555554

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=96.25  E-value=0.0043  Score=52.67  Aligned_cols=83  Identities=20%  Similarity=0.209  Sum_probs=47.2

Q ss_pred             CccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCc
Q 037671           88 NLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLE  167 (187)
Q Consensus        88 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~  167 (187)
                      +|+.|+++++. ++.  +.   ...++|+.|++++|.++.     +....+.|+.|++++ +.++.-. ..+ ..+++|+
T Consensus       383 ~L~~LdLs~N~-Lt~--LP---~l~s~L~~LdLS~N~Lss-----IP~l~~~L~~L~Ls~-NqLt~LP-~sl-~~L~~L~  448 (788)
T PRK15387        383 GLKELIVSGNR-LTS--LP---VLPSELKELMVSGNRLTS-----LPMLPSGLLSLSVYR-NQLTRLP-ESL-IHLSSET  448 (788)
T ss_pred             ccceEEecCCc-ccC--CC---CcccCCCEEEccCCcCCC-----CCcchhhhhhhhhcc-CcccccC-hHH-hhccCCC
Confidence            56666665543 332  11   112467777777765542     111223567777766 3554221 112 3578999


Q ss_pred             EEEeeCCCCCHHHHHhh
Q 037671          168 SINVWGTRLPLDCFIGL  184 (187)
Q Consensus       168 ~L~l~~~~i~~~~~~~L  184 (187)
                      .|++++|++++.....|
T Consensus       449 ~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        449 TVNLEGNPLSERTLQAL  465 (788)
T ss_pred             eEECCCCCCCchHHHHH
Confidence            99999999987765544

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=96.15  E-value=0.0089  Score=50.80  Aligned_cols=13  Identities=23%  Similarity=0.388  Sum_probs=8.0

Q ss_pred             CCcEEEeeCCCCC
Q 037671          165 RLESINVWGTRLP  177 (187)
Q Consensus       165 ~L~~L~l~~~~i~  177 (187)
                      +|+.|++++|.++
T Consensus       343 ~Lq~LdLS~N~Ls  355 (788)
T PRK15387        343 GLQELSVSDNQLA  355 (788)
T ss_pred             ccceEecCCCccC
Confidence            5666666666554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.10  E-value=0.0014  Score=47.68  Aligned_cols=65  Identities=18%  Similarity=0.360  Sum_probs=48.6

Q ss_pred             cCCCCCEEEecCCCCC-HHHHHHHHhcCCccceeeccCCCCCcH-HHHHHHHhcCCCCcEEEeeCCCCC
Q 037671          111 RASSLQHLNIGGTFIT-DESLYAIANSCPQLKSIVLWSCRQVTG-NGLLFLVNKCGRLESINVWGTRLP  177 (187)
Q Consensus       111 ~~~~L~~L~l~~~~~~-~~~~~~l~~~~~~L~~L~l~~~~~~~~-~~~~~l~~~~~~L~~L~l~~~~i~  177 (187)
                      .+|+|+.|.++.|... ..++..++..+|+|+++++++ +.+.+ +.+.-+ ...++|..|++..|..+
T Consensus        63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~-Nki~~lstl~pl-~~l~nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen   63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSG-NKIKDLSTLRPL-KELENLKSLDLFNCSVT  129 (260)
T ss_pred             CcchhhhhcccCCcccccccceehhhhCCceeEEeecC-Cccccccccchh-hhhcchhhhhcccCCcc
Confidence            3689999999997443 345777888899999999998 47664 222222 35788999999999765

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=96.00  E-value=0.0036  Score=52.18  Aligned_cols=14  Identities=21%  Similarity=0.285  Sum_probs=9.3

Q ss_pred             cCCCccEEEecCCC
Q 037671           85 CISNLTSISLWGLT   98 (187)
Q Consensus        85 ~~~~L~~L~l~~~~   98 (187)
                      .++.|++|.+-+|+
T Consensus       107 pF~sLr~LElrg~~  120 (1096)
T KOG1859|consen  107 PFRSLRVLELRGCD  120 (1096)
T ss_pred             cccceeeEEecCcc
Confidence            35667777777665

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=95.95  E-value=0.0073  Score=46.81  Aligned_cols=68  Identities=12%  Similarity=0.167  Sum_probs=49.0

Q ss_pred             HHHhcCCCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCC
Q 037671          107 QLISRASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLP  177 (187)
Q Consensus       107 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~  177 (187)
                      ..++..++|+.|++++|.++.-.-. .+.....+++|.+.. +.+.... ..++++...|+.|+|.||+||
T Consensus       268 ~cf~~L~~L~~lnlsnN~i~~i~~~-aFe~~a~l~eL~L~~-N~l~~v~-~~~f~~ls~L~tL~L~~N~it  335 (498)
T KOG4237|consen  268 KCFKKLPNLRKLNLSNNKITRIEDG-AFEGAAELQELYLTR-NKLEFVS-SGMFQGLSGLKTLSLYDNQIT  335 (498)
T ss_pred             HHHhhcccceEeccCCCccchhhhh-hhcchhhhhhhhcCc-chHHHHH-HHhhhccccceeeeecCCeeE
Confidence            3456789999999999877753222 234466799999987 4553322 455678899999999999885

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=95.65  E-value=0.011  Score=41.81  Aligned_cols=86  Identities=20%  Similarity=0.278  Sum_probs=54.2

Q ss_pred             cCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCH-HHHHHHHhcCCccceeeccCCCCCcHHHHH--HHHh
Q 037671           85 CISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITD-ESLYAIANSCPQLKSIVLWSCRQVTGNGLL--FLVN  161 (187)
Q Consensus        85 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~--~l~~  161 (187)
                      ..++|..|.+..+. |+..+- -+....|+|++|.+.+|.+.. ..+..++. ||.|+.|.+-+ +.++...=.  .+.-
T Consensus        62 ~l~rL~tLll~nNr-It~I~p-~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~-~p~L~~Ltll~-Npv~~k~~YR~yvl~  137 (233)
T KOG1644|consen   62 HLPRLHTLLLNNNR-ITRIDP-DLDTFLPNLKTLILTNNSIQELGDLDPLAS-CPKLEYLTLLG-NPVEHKKNYRLYVLY  137 (233)
T ss_pred             CccccceEEecCCc-ceeecc-chhhhccccceEEecCcchhhhhhcchhcc-CCccceeeecC-CchhcccCceeEEEE
Confidence            35677788886554 555322 233447888888888876654 23555554 88888888877 355444311  2233


Q ss_pred             cCCCCcEEEeeCC
Q 037671          162 KCGRLESINVWGT  174 (187)
Q Consensus       162 ~~~~L~~L~l~~~  174 (187)
                      ..|+|+.||.++.
T Consensus       138 klp~l~~LDF~kV  150 (233)
T KOG1644|consen  138 KLPSLRTLDFQKV  150 (233)
T ss_pred             ecCcceEeehhhh
Confidence            5688888888754

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=95.49  E-value=0.034  Score=47.33  Aligned_cols=88  Identities=10%  Similarity=0.076  Sum_probs=50.0

Q ss_pred             CCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcH--HHHHHHHhcCC
Q 037671           87 SNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTG--NGLLFLVNKCG  164 (187)
Q Consensus        87 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~--~~~~~l~~~~~  164 (187)
                      ++|+.|+++++. ++.  +....  .++|+.|++++|.++.- -..+.   +.|+.|+++++ .++.  ..+..+....|
T Consensus       346 ~sL~~L~Ls~N~-L~~--LP~~l--p~~L~~LdLs~N~Lt~L-P~~l~---~sL~~LdLs~N-~L~~LP~sl~~~~~~~~  415 (754)
T PRK15370        346 PELQVLDVSKNQ-ITV--LPETL--PPTITTLDVSRNALTNL-PENLP---AALQIMQASRN-NLVRLPESLPHFRGEGP  415 (754)
T ss_pred             CcccEEECCCCC-CCc--CChhh--cCCcCEEECCCCcCCCC-CHhHH---HHHHHHhhccC-CcccCchhHHHHhhcCC
Confidence            566677776554 331  11101  25677777777655420 00111   24666777664 4332  12444445568


Q ss_pred             CCcEEEeeCCCCCHHHHHhh
Q 037671          165 RLESINVWGTRLPLDCFIGL  184 (187)
Q Consensus       165 ~L~~L~l~~~~i~~~~~~~L  184 (187)
                      ++..|++.+|+++...+..+
T Consensus       416 ~l~~L~L~~Npls~~tl~~L  435 (754)
T PRK15370        416 QPTRIIVEYNPFSERTIQNM  435 (754)
T ss_pred             CccEEEeeCCCccHHHHHHH
Confidence            89999999999998877665

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=95.19  E-value=0.0085  Score=39.83  Aligned_cols=81  Identities=19%  Similarity=0.155  Sum_probs=46.8

Q ss_pred             CCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCC
Q 037671           87 SNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRL  166 (187)
Q Consensus        87 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L  166 (187)
                      .+|+..+++++. +.. .-..+...++.+++|+++++.+.+--.. ++ .+|.|+.|++..+ .+.-+. .-++. +.++
T Consensus        53 ~el~~i~ls~N~-fk~-fp~kft~kf~t~t~lNl~~neisdvPeE-~A-am~aLr~lNl~~N-~l~~~p-~vi~~-L~~l  125 (177)
T KOG4579|consen   53 YELTKISLSDNG-FKK-FPKKFTIKFPTATTLNLANNEISDVPEE-LA-AMPALRSLNLRFN-PLNAEP-RVIAP-LIKL  125 (177)
T ss_pred             ceEEEEecccch-hhh-CCHHHhhccchhhhhhcchhhhhhchHH-Hh-hhHHhhhcccccC-ccccch-HHHHH-HHhH
Confidence            456666676542 111 1123445577888888888776653232 33 3777888888763 443332 33443 6667


Q ss_pred             cEEEeeCC
Q 037671          167 ESINVWGT  174 (187)
Q Consensus       167 ~~L~l~~~  174 (187)
                      -.||..++
T Consensus       126 ~~Lds~~n  133 (177)
T KOG4579|consen  126 DMLDSPEN  133 (177)
T ss_pred             HHhcCCCC
Confidence            77777766

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=94.72  E-value=0.021  Score=40.37  Aligned_cols=90  Identities=16%  Similarity=0.126  Sum_probs=60.9

Q ss_pred             HHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHH
Q 037671           51 LVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESL  130 (187)
Q Consensus        51 ~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  130 (187)
                      .+.+.++|..|.+.+|    .++.-.-..   ....|+|..|.+.++.-..-..+..+. .||.|++|.+-+|++++..=
T Consensus        59 ~lp~l~rL~tLll~nN----rIt~I~p~L---~~~~p~l~~L~LtnNsi~~l~dl~pLa-~~p~L~~Ltll~Npv~~k~~  130 (233)
T KOG1644|consen   59 NLPHLPRLHTLLLNNN----RITRIDPDL---DTFLPNLKTLILTNNSIQELGDLDPLA-SCPKLEYLTLLGNPVEHKKN  130 (233)
T ss_pred             cCCCccccceEEecCC----cceeeccch---hhhccccceEEecCcchhhhhhcchhc-cCCccceeeecCCchhcccC
Confidence            3456788999999887    455432211   233689999999877633333444444 49999999999988887532


Q ss_pred             H--HHHhcCCccceeeccCC
Q 037671          131 Y--AIANSCPQLKSIVLWSC  148 (187)
Q Consensus       131 ~--~l~~~~~~L~~L~l~~~  148 (187)
                      .  .+...+|.|+.||+.+.
T Consensus       131 YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  131 YRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             ceeEEEEecCcceEeehhhh
Confidence            2  23345799999999764

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.45  E-value=0.027  Score=22.99  Aligned_cols=14  Identities=21%  Similarity=0.425  Sum_probs=7.6

Q ss_pred             CCCcEEEeeCCCCC
Q 037671          164 GRLESINVWGTRLP  177 (187)
Q Consensus       164 ~~L~~L~l~~~~i~  177 (187)
                      ++|+.|++++|+++
T Consensus         1 ~~L~~L~l~~n~L~   14 (17)
T PF13504_consen    1 PNLRTLDLSNNRLT   14 (17)
T ss_dssp             TT-SEEEETSS--S
T ss_pred             CccCEEECCCCCCC
Confidence            46777777777654

...

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]

Probab=94.41  E-value=0.073  Score=43.05  Aligned_cols=87  Identities=16%  Similarity=0.098  Sum_probs=61.2

Q ss_pred             hccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCC--CCCH-HHHHHHHhcCCccceeeccCCCCCcH-----H
Q 037671           83 AKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGT--FITD-ESLYAIANSCPQLKSIVLWSCRQVTG-----N  154 (187)
Q Consensus        83 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~~~-~~~~~l~~~~~~L~~L~l~~~~~~~~-----~  154 (187)
                      ....|.+..++++.+....-.++..+....|+|++|+|++|  .+.+ ..+..+.  .+.||+|-+.+++-++.     +
T Consensus       214 ~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k--~l~Leel~l~GNPlc~tf~~~s~  291 (585)
T KOG3763|consen  214 EENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLK--GLPLEELVLEGNPLCTTFSDRSE  291 (585)
T ss_pred             hcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhc--CCCHHHeeecCCccccchhhhHH
Confidence            35678888999987765666778888888999999999997  4433 2343333  35589999988554332     3


Q ss_pred             HHHHHHhcCCCCcEEEe
Q 037671          155 GLLFLVNKCGRLESINV  171 (187)
Q Consensus       155 ~~~~l~~~~~~L~~L~l  171 (187)
                      .+.++-+..|+|..||=
T Consensus       292 yv~~i~~~FPKL~~LDG  308 (585)
T KOG3763|consen  292 YVSAIRELFPKLLRLDG  308 (585)
T ss_pred             HHHHHHHhcchheeecC
Confidence            45666677888887763

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=94.21  E-value=0.0006  Score=46.90  Aligned_cols=15  Identities=20%  Similarity=0.291  Sum_probs=11.0

Q ss_pred             cCCCCcEEEeeCCCC
Q 037671          162 KCGRLESINVWGTRL  176 (187)
Q Consensus       162 ~~~~L~~L~l~~~~i  176 (187)
                      .+.+|+.|.+++|.+
T Consensus       148 ~lt~lqil~lrdndl  162 (264)
T KOG0617|consen  148 KLTNLQILSLRDNDL  162 (264)
T ss_pred             hhcceeEEeeccCch
Confidence            356788888888843

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.98  E-value=0.027  Score=44.03  Aligned_cols=112  Identities=11%  Similarity=0.075  Sum_probs=54.9

Q ss_pred             HHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHH
Q 037671           51 LVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESL  130 (187)
Q Consensus        51 ~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  130 (187)
                      .....++|..|++++|. =+.++.++-..       ..|+.++++.+. +..  ...+.-....++++--+.+++..-..
T Consensus       430 ~l~~l~kLt~L~L~NN~-Ln~LP~e~~~l-------v~Lq~LnlS~Nr-Fr~--lP~~~y~lq~lEtllas~nqi~~vd~  498 (565)
T KOG0472|consen  430 ELSQLQKLTFLDLSNNL-LNDLPEEMGSL-------VRLQTLNLSFNR-FRM--LPECLYELQTLETLLASNNQIGSVDP  498 (565)
T ss_pred             HHHhhhcceeeecccch-hhhcchhhhhh-------hhhheecccccc-ccc--chHHHhhHHHHHHHHhccccccccCh
Confidence            33445667777777663 12334333222       337777776542 211  11111111223333333333321111


Q ss_pred             HHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCC
Q 037671          131 YAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLP  177 (187)
Q Consensus       131 ~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~  177 (187)
                      .-+ ..+.+|.+|++.. +.+  ..+-.+...|.+|++|++.||++.
T Consensus       499 ~~l-~nm~nL~tLDL~n-Ndl--q~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  499 SGL-KNMRNLTTLDLQN-NDL--QQIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             HHh-hhhhhcceeccCC-Cch--hhCChhhccccceeEEEecCCccC
Confidence            111 2356788888866 343  223344557888999999998664

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=93.85  E-value=0.037  Score=42.13  Aligned_cols=30  Identities=23%  Similarity=0.482  Sum_probs=25.4

Q ss_pred             ccccccchhHHHHHHHhhHHHHHHh-hhhhcc
Q 037671            2 LFVFVIPFVCLLRVSSVCKKWKLGV-KQSLAR   32 (187)
Q Consensus         2 I~~~l~~~~~~~~~~~vck~w~~~~-~~~l~~   32 (187)
                      ||+||+. .+++.|-+|||.|+++. .+.+|+
T Consensus        90 ilsyld~-~sLc~celv~k~W~r~l~dg~~WK  120 (499)
T KOG0281|consen   90 ILSYLDA-LSLCACELVCKEWKRVLSDGMLWK  120 (499)
T ss_pred             HHHhcch-hhhhHHHHHHHHHHHHhccchHHH
Confidence            8999996 99999999999999976 445554

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=93.80  E-value=0.00063  Score=46.81  Aligned_cols=107  Identities=18%  Similarity=0.233  Sum_probs=53.9

Q ss_pred             CCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCC-CCCHHHHHHHHhcCCCCCEEEecCCCCCHH-----
Q 037671           55 AYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLT-GITDKGVVQLISRASSLQHLNIGGTFITDE-----  128 (187)
Q Consensus        55 ~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-----  128 (187)
                      ..+|+.|++++|    ++++--. .+   ...++|+.|+++.+. .+..+|+    .++|.|+.|++.++++...     
T Consensus        55 l~nlevln~~nn----qie~lp~-~i---ssl~klr~lnvgmnrl~~lprgf----gs~p~levldltynnl~e~~lpgn  122 (264)
T KOG0617|consen   55 LKNLEVLNLSNN----QIEELPT-SI---SSLPKLRILNVGMNRLNILPRGF----GSFPALEVLDLTYNNLNENSLPGN  122 (264)
T ss_pred             hhhhhhhhcccc----hhhhcCh-hh---hhchhhhheecchhhhhcCcccc----CCCchhhhhhccccccccccCCcc
Confidence            456777777765    2322111 11   235777777775332 1222333    3467777777776544322     


Q ss_pred             -----HHHHH-------------HhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCC
Q 037671          129 -----SLYAI-------------ANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRL  176 (187)
Q Consensus       129 -----~~~~l-------------~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i  176 (187)
                           .+.++             ...+.+|+-|.+..+..++-.  +.+. .+..|++|.+.||.+
T Consensus       123 ff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lp--keig-~lt~lrelhiqgnrl  185 (264)
T KOG0617|consen  123 FFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLP--KEIG-DLTRLRELHIQGNRL  185 (264)
T ss_pred             hhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCc--HHHH-HHHHHHHHhccccee
Confidence                 11111             122445666776654332211  1222 245688888888855

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=93.15  E-value=0.33  Score=41.55  Aligned_cols=77  Identities=14%  Similarity=0.190  Sum_probs=34.5

Q ss_pred             CCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCC
Q 037671           87 SNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRL  166 (187)
Q Consensus        87 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L  166 (187)
                      ++|+.|+++++. ++.  +..-.  .++|+.|++++|.+..- -..+   ..+|+.|++++ +.++.-  ..  .-.++|
T Consensus       220 ~nL~~L~Ls~N~-Lts--LP~~l--~~~L~~L~Ls~N~L~~L-P~~l---~s~L~~L~Ls~-N~L~~L--P~--~l~~sL  285 (754)
T PRK15370        220 GNIKTLYANSNQ-LTS--IPATL--PDTIQEMELSINRITEL-PERL---PSALQSLDLFH-NKISCL--PE--NLPEEL  285 (754)
T ss_pred             cCCCEEECCCCc-ccc--CChhh--hccccEEECcCCccCcC-ChhH---hCCCCEEECcC-CccCcc--cc--ccCCCC
Confidence            467777776553 332  11101  23566666666554420 0011   13466666654 243311  00  112356


Q ss_pred             cEEEeeCCCCC
Q 037671          167 ESINVWGTRLP  177 (187)
Q Consensus       167 ~~L~l~~~~i~  177 (187)
                      +.|++++|.++
T Consensus       286 ~~L~Ls~N~Lt  296 (754)
T PRK15370        286 RYLSVYDNSIR  296 (754)
T ss_pred             cEEECCCCccc
Confidence            66666666543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=92.86  E-value=0.21  Score=43.49  Aligned_cols=12  Identities=17%  Similarity=0.113  Sum_probs=7.4

Q ss_pred             cCCccceeeccC
Q 037671          136 SCPQLKSIVLWS  147 (187)
Q Consensus       136 ~~~~L~~L~l~~  147 (187)
                      .+++|++|.+..
T Consensus       640 ~L~~Lr~L~l~~  651 (889)
T KOG4658|consen  640 ELQSLRVLRLPR  651 (889)
T ss_pred             hcccccEEEeec
Confidence            356667776655

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=92.51  E-value=0.043  Score=42.76  Aligned_cols=105  Identities=15%  Similarity=0.119  Sum_probs=53.0

Q ss_pred             CcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecC-CCCCHHHHHHHHhc
Q 037671           58 LKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGG-TFITDESLYAIANS  136 (187)
Q Consensus        58 L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~~  136 (187)
                      ...+.|..|. -..+++..++.      .++|++|+|+.+. |+..+-.++.. .++|.+|.+.+ +.|++---.. +.+
T Consensus        69 tveirLdqN~-I~~iP~~aF~~------l~~LRrLdLS~N~-Is~I~p~AF~G-L~~l~~Lvlyg~NkI~~l~k~~-F~g  138 (498)
T KOG4237|consen   69 TVEIRLDQNQ-ISSIPPGAFKT------LHRLRRLDLSKNN-ISFIAPDAFKG-LASLLSLVLYGNNKITDLPKGA-FGG  138 (498)
T ss_pred             ceEEEeccCC-cccCChhhccc------hhhhceecccccc-hhhcChHhhhh-hHhhhHHHhhcCCchhhhhhhH-hhh
Confidence            5556665542 11344444433      4677777777664 65555444433 56666665555 6666532222 233


Q ss_pred             CCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCC
Q 037671          137 CPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGT  174 (187)
Q Consensus       137 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~  174 (187)
                      +..++.|.++-+ +++-.- ......+++|..|.+.+|
T Consensus       139 L~slqrLllNan-~i~Cir-~~al~dL~~l~lLslyDn  174 (498)
T KOG4237|consen  139 LSSLQRLLLNAN-HINCIR-QDALRDLPSLSLLSLYDN  174 (498)
T ss_pred             HHHHHHHhcChh-hhcchh-HHHHHHhhhcchhcccch
Confidence            445666666442 332222 222334666777777666

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=92.21  E-value=0.042  Score=43.53  Aligned_cols=83  Identities=25%  Similarity=0.237  Sum_probs=47.1

Q ss_pred             cCCCccEEEecCCCCCCHH-HHHHHHhcCCCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcC
Q 037671           85 CISNLTSISLWGLTGITDK-GVVQLISRASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKC  163 (187)
Q Consensus        85 ~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~  163 (187)
                      .+++|+.|+++++. |+.. ++    ..++.|+.|++.+|.+.+-.-   ...++.|+.++++++ .+.+..-.- ...+
T Consensus       116 ~~~~L~~L~ls~N~-I~~i~~l----~~l~~L~~L~l~~N~i~~~~~---~~~l~~L~~l~l~~n-~i~~ie~~~-~~~~  185 (414)
T KOG0531|consen  116 SLVNLQVLDLSFNK-ITKLEGL----STLTLLKELNLSGNLISDISG---LESLKSLKLLDLSYN-RIVDIENDE-LSEL  185 (414)
T ss_pred             hhhcchheeccccc-cccccch----hhccchhhheeccCcchhccC---CccchhhhcccCCcc-hhhhhhhhh-hhhc
Confidence            36777777777664 4332 22    123447777777777664211   122666777777764 333222101 3456


Q ss_pred             CCCcEEEeeCCCCC
Q 037671          164 GRLESINVWGTRLP  177 (187)
Q Consensus       164 ~~L~~L~l~~~~i~  177 (187)
                      .+++.+++.+|.+.
T Consensus       186 ~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  186 ISLEELDLGGNSIR  199 (414)
T ss_pred             cchHHHhccCCchh
Confidence            77888888877553

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=91.30  E-value=0.093  Score=41.62  Aligned_cols=35  Identities=20%  Similarity=0.093  Sum_probs=15.9

Q ss_pred             CCCCCEEEecCCCCCHHHHHHHHhcCCccceeeccC
Q 037671          112 ASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWS  147 (187)
Q Consensus       112 ~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~  147 (187)
                      .+.|+.++++++.+.+-.-.. ...+..++.+.+.+
T Consensus       161 l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~  195 (414)
T KOG0531|consen  161 LKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGG  195 (414)
T ss_pred             chhhhcccCCcchhhhhhhhh-hhhccchHHHhccC
Confidence            455555555554444322111 23344555555554

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=90.98  E-value=0.15  Score=34.15  Aligned_cols=101  Identities=15%  Similarity=0.137  Sum_probs=60.1

Q ss_pred             eeeecccccC-HHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCC
Q 037671           35 NLSFAGWKMD-DDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRAS  113 (187)
Q Consensus        35 ~l~~~~~~l~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  113 (187)
                      .+.+.+|.+. .............|...++++|.    +.+.-- .+  ...++-++.|+++.+. +++-...  ..+++
T Consensus        31 ~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~----fk~fp~-kf--t~kf~t~t~lNl~~ne-isdvPeE--~Aam~  100 (177)
T KOG4579|consen   31 FLDLSSCQLMYIADAVYMLSKGYELTKISLSDNG----FKKFPK-KF--TIKFPTATTLNLANNE-ISDVPEE--LAAMP  100 (177)
T ss_pred             hcccccchhhHHHHHHHHHhCCceEEEEecccch----hhhCCH-HH--hhccchhhhhhcchhh-hhhchHH--HhhhH
Confidence            3466677554 22333334445668888888762    222211 11  2345678889987654 5544333  34589


Q ss_pred             CCCEEEecCCCCCHHHHHHHHhcCCccceeeccC
Q 037671          114 SLQHLNIGGTFITDESLYAIANSCPQLKSIVLWS  147 (187)
Q Consensus       114 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~  147 (187)
                      .|+.|++..|.+..+ .+.++. +.++..|+..+
T Consensus       101 aLr~lNl~~N~l~~~-p~vi~~-L~~l~~Lds~~  132 (177)
T KOG4579|consen  101 ALRSLNLRFNPLNAE-PRVIAP-LIKLDMLDSPE  132 (177)
T ss_pred             HhhhcccccCccccc-hHHHHH-HHhHHHhcCCC
Confidence            999999999877643 344454 55667777765

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=90.58  E-value=0.11  Score=22.57  Aligned_cols=13  Identities=31%  Similarity=0.539  Sum_probs=10.5

Q ss_pred             CCcEEEeeCCCCC
Q 037671          165 RLESINVWGTRLP  177 (187)
Q Consensus       165 ~L~~L~l~~~~i~  177 (187)
                      +|++|++++|.++
T Consensus         1 ~L~~Ldls~n~l~   13 (22)
T PF00560_consen    1 NLEYLDLSGNNLT   13 (22)
T ss_dssp             TESEEEETSSEES
T ss_pred             CccEEECCCCcCE
Confidence            5788999998765

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]

Probab=89.71  E-value=0.4  Score=39.00  Aligned_cols=66  Identities=20%  Similarity=0.220  Sum_probs=48.5

Q ss_pred             cCCCCCEEEecCCCCC-HHHHHHHHhcCCccceeeccCCC-CCc-HHHHHHHHhcCCCCcEEEeeCCCCCH
Q 037671          111 RASSLQHLNIGGTFIT-DESLYAIANSCPQLKSIVLWSCR-QVT-GNGLLFLVNKCGRLESINVWGTRLPL  178 (187)
Q Consensus       111 ~~~~L~~L~l~~~~~~-~~~~~~l~~~~~~L~~L~l~~~~-~~~-~~~~~~l~~~~~~L~~L~l~~~~i~~  178 (187)
                      ..|.+..+.|++|.+. -+++..++...|+|..|+|+++. .+. +..+.++  +.+.|++|.+.||++..
T Consensus       216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~--k~l~Leel~l~GNPlc~  284 (585)
T KOG3763|consen  216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKL--KGLPLEELVLEGNPLCT  284 (585)
T ss_pred             CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhh--cCCCHHHeeecCCcccc
Confidence            5788999999997655 46788899999999999999851 222 2223322  24569999999998854

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=88.27  E-value=0.72  Score=40.36  Aligned_cols=82  Identities=15%  Similarity=0.148  Sum_probs=45.2

Q ss_pred             CCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCC--HHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcC
Q 037671           86 ISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFIT--DESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKC  163 (187)
Q Consensus        86 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~  163 (187)
                      .|.|+.|++++|...  ..++..+...-+|+.|++++..+.  +.++    ..++.|.+|++......  ..+..+...+
T Consensus       570 m~~LrVLDLs~~~~l--~~LP~~I~~Li~LryL~L~~t~I~~LP~~l----~~Lk~L~~Lnl~~~~~l--~~~~~i~~~L  641 (889)
T KOG4658|consen  570 LPLLRVLDLSGNSSL--SKLPSSIGELVHLRYLDLSDTGISHLPSGL----GNLKKLIYLNLEVTGRL--ESIPGILLEL  641 (889)
T ss_pred             CcceEEEECCCCCcc--CcCChHHhhhhhhhcccccCCCccccchHH----HHHHhhheecccccccc--ccccchhhhc
Confidence            577777777765321  122233344566777777776655  2222    22456777777653221  1223344457


Q ss_pred             CCCcEEEeeCCC
Q 037671          164 GRLESINVWGTR  175 (187)
Q Consensus       164 ~~L~~L~l~~~~  175 (187)
                      ++|+.|.+....
T Consensus       642 ~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  642 QSLRVLRLPRSA  653 (889)
T ss_pred             ccccEEEeeccc
Confidence            788888886653

>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=85.60  E-value=0.71  Score=21.06  Aligned_cols=8  Identities=25%  Similarity=0.571  Sum_probs=3.7

Q ss_pred             CCEEEecC
Q 037671          115 LQHLNIGG  122 (187)
Q Consensus       115 L~~L~l~~  122 (187)
                      ||+|+|..
T Consensus         2 LKtL~L~~    9 (26)
T PF07723_consen    2 LKTLHLDS    9 (26)
T ss_pred             CeEEEeeE
Confidence            44444444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=84.86  E-value=0.51  Score=38.83  Aligned_cols=26  Identities=27%  Similarity=0.538  Sum_probs=23.8

Q ss_pred             CccccccchhHHHHHHHhhHHHHHHhh
Q 037671            1 FLFVFVIPFVCLLRVSSVCKKWKLGVK   27 (187)
Q Consensus         1 ~I~~~l~~~~~~~~~~~vck~w~~~~~   27 (187)
                      |||.||++ ++++.+++||+.|+....
T Consensus       118 ~il~~Ld~-~~l~~~~~v~~~w~~~~~  143 (537)
T KOG0274|consen  118 HILSFLDG-RDLLAVRQVCRNWNKLLD  143 (537)
T ss_pred             cccccCCH-HHhhhhhhhcchhhhhhh
Confidence            68999996 999999999999999773

>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]

Probab=84.85  E-value=5  Score=30.88  Aligned_cols=81  Identities=16%  Similarity=0.198  Sum_probs=42.9

Q ss_pred             HHHHHHhcCCCCCEEEecC-CCCCHHHHHHHHhcCCc---cceeeccCCCCCcHH---HHHHHHhcCCCCcEEEeeCCCC
Q 037671          104 GVVQLISRASSLQHLNIGG-TFITDESLYAIANSCPQ---LKSIVLWSCRQVTGN---GLLFLVNKCGRLESINVWGTRL  176 (187)
Q Consensus       104 ~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~~---L~~L~l~~~~~~~~~---~~~~l~~~~~~L~~L~l~~~~i  176 (187)
                      .+..+-..-+.++.++++. ..++.+.+..++..+.+   .+...+.+ ...++.   ++..+...++.|++|.+.+|-|
T Consensus       189 ~leri~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~-tr~~d~vA~a~a~ml~~n~sl~slnvesnFI  267 (353)
T KOG3735|consen  189 SLERIKENDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLAN-TRSSDPVAFAIAEMLKENKSLTSLNVESNFI  267 (353)
T ss_pred             HHHHHhcCCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhc-ccCCchhHHHHHHHHhhcchhhheecccccc
Confidence            3333444456677777776 45665555555444332   44444433 122222   2333344566777777777777


Q ss_pred             CHHHHHhhh
Q 037671          177 PLDCFIGLL  185 (187)
Q Consensus       177 ~~~~~~~L~  185 (187)
                      |..|+.+++
T Consensus       268 tg~gi~a~~  276 (353)
T KOG3735|consen  268 TGLGIMALL  276 (353)
T ss_pred             ccHHHHHHH
Confidence            777766654

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=84.30  E-value=0.69  Score=36.14  Aligned_cols=26  Identities=27%  Similarity=0.505  Sum_probs=22.1

Q ss_pred             ccccccchhHHHHHHHhhHHHHHHhh
Q 037671            2 LFVFVIPFVCLLRVSSVCKKWKLGVK   27 (187)
Q Consensus         2 I~~~l~~~~~~~~~~~vck~w~~~~~   27 (187)
                      |..+|+...|+++++.||+.||.++.
T Consensus        15 i~~~l~~~~d~~~~~~vC~sWr~a~~   40 (373)
T PLN03215         15 IAGRLFSNVELKRFRSICRSWRSSVS   40 (373)
T ss_pred             HHhhCCcHHHHHHHHhhhhhHHHhcc
Confidence            56778667899999999999999764

>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]

Probab=83.45  E-value=3.4  Score=31.72  Aligned_cols=100  Identities=21%  Similarity=0.249  Sum_probs=65.3

Q ss_pred             HHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhh-ccCCCccEEEecCCC--CCCHHHHHHHHhcCCCCCEEEec
Q 037671           45 DDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFA-KCISNLTSISLWGLT--GITDKGVVQLISRASSLQHLNIG  121 (187)
Q Consensus        45 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~-~~~~~L~~L~l~~~~--~~~~~~~~~~~~~~~~L~~L~l~  121 (187)
                      +..+.++...-+.+..+++.+..   .++...+..++.+ ....+.+.+.+.+..  ..-..++..+++.++.|++|++.
T Consensus       187 e~~leri~~nd~~l~evnlnn~~---~ip~e~lk~~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnve  263 (353)
T KOG3735|consen  187 ESSLERIKENDTGLTEVNLNNIR---RIPIETLKQFSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVE  263 (353)
T ss_pred             HHHHHHHhcCCCCceeeeccccc---cCCHHHHHHHHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcchhhheecc
Confidence            33455666666788888888653   6777766665433 334556666664322  22234566778889999999999


Q ss_pred             CCCCCHHHHHHHHhcCCc---cceeeccC
Q 037671          122 GTFITDESLYAIANSCPQ---LKSIVLWS  147 (187)
Q Consensus       122 ~~~~~~~~~~~l~~~~~~---L~~L~l~~  147 (187)
                      ++.|+..++.++...++.   |..+.+.+
T Consensus       264 snFItg~gi~a~~~al~~n~tl~el~~dn  292 (353)
T KOG3735|consen  264 SNFITGLGIMALLRALQSNKSLTELKNDN  292 (353)
T ss_pred             ccccccHHHHHHHHHHhccchhhHhhhhh
Confidence            999999988877655433   55555543

>smart00370 LRR Leucine-rich repeats, outliers

Probab=83.34  E-value=1  Score=20.22  Aligned_cols=14  Identities=14%  Similarity=0.325  Sum_probs=10.9

Q ss_pred             CCCcEEEeeCCCCC
Q 037671          164 GRLESINVWGTRLP  177 (187)
Q Consensus       164 ~~L~~L~l~~~~i~  177 (187)
                      ++|+.|++++|.++
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00370        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            57888999888554

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=83.34  E-value=1  Score=20.22  Aligned_cols=14  Identities=14%  Similarity=0.325  Sum_probs=10.9

Q ss_pred             CCCcEEEeeCCCCC
Q 037671          164 GRLESINVWGTRLP  177 (187)
Q Consensus       164 ~~L~~L~l~~~~i~  177 (187)
                      ++|+.|++++|.++
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00369        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            57888999888554

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=82.93  E-value=1.1  Score=20.42  Aligned_cols=14  Identities=14%  Similarity=0.356  Sum_probs=11.7

Q ss_pred             CCCcEEEeeCCCCC
Q 037671          164 GRLESINVWGTRLP  177 (187)
Q Consensus       164 ~~L~~L~l~~~~i~  177 (187)
                      .+|+.|++++|.|+
T Consensus         2 ~~L~~L~L~~NkI~   15 (26)
T smart00365        2 TNLEELDLSQNKIK   15 (26)
T ss_pred             CccCEEECCCCccc
Confidence            57899999999884

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=82.15  E-value=0.73  Score=36.14  Aligned_cols=17  Identities=12%  Similarity=0.317  Sum_probs=10.7

Q ss_pred             cCCCCcEEEeeCCCCCH
Q 037671          162 KCGRLESINVWGTRLPL  178 (187)
Q Consensus       162 ~~~~L~~L~l~~~~i~~  178 (187)
                      .+++++.|++++|.+++
T Consensus       253 ~l~~l~~L~~s~n~i~~  269 (394)
T COG4886         253 NLSNLETLDLSNNQISS  269 (394)
T ss_pred             cccccceeccccccccc
Confidence            34557777777776654

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=80.76  E-value=1.1  Score=35.07  Aligned_cols=58  Identities=17%  Similarity=0.295  Sum_probs=28.6

Q ss_pred             CCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCC
Q 037671          114 SLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRL  176 (187)
Q Consensus       114 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i  176 (187)
                      +|+.|+++++.+..--  .-...+|.|+.|+++.+ .+++..-.  ....+.|+.|++++|.+
T Consensus       141 nL~~L~l~~N~i~~l~--~~~~~l~~L~~L~l~~N-~l~~l~~~--~~~~~~L~~L~ls~N~i  198 (394)
T COG4886         141 NLKELDLSDNKIESLP--SPLRNLPNLKNLDLSFN-DLSDLPKL--LSNLSNLNNLDLSGNKI  198 (394)
T ss_pred             hcccccccccchhhhh--hhhhccccccccccCCc-hhhhhhhh--hhhhhhhhheeccCCcc
Confidence            5666666665554321  11233566666666653 44333311  11345566666666644

>PRK15386 type III secretion protein GogB; Provisional

Probab=80.74  E-value=3.1  Score=33.13  Aligned_cols=13  Identities=23%  Similarity=0.038  Sum_probs=7.9

Q ss_pred             cCCCCcEEEeeec
Q 037671           54 YAYSLKELEISRS   66 (187)
Q Consensus        54 ~~~~L~~L~l~~~   66 (187)
                      .++++++|++++|
T Consensus        50 ~~~~l~~L~Is~c   62 (426)
T PRK15386         50 EARASGRLYIKDC   62 (426)
T ss_pred             HhcCCCEEEeCCC
Confidence            3566677776643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	187
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-17
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-16
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	5e-16
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	9e-15
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-14
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-14
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	9e-10
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-16
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-16
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-15
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	6e-10
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	5e-16
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-14
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	4e-14
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	5e-14
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-12
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-12
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	6e-11
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	2e-11
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	2e-06
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	2e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	4e-04
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	4e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	6e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	4e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	1e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	6e-04
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	2e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-04

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 78.4 bits (193), Expect = 2e-17
 Identities = 29/144 (20%), Positives = 58/144 (40%), Gaps = 11/144 (7%)

Query: 35  NLSFAGWKMDDDSTARLVGYAY-SLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSIS 93
           NL   GW          +  +Y  L+E+ + R      +TD+ L     AK   N   + 
Sbjct: 83  NLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKR----MVVTDDCLE--LIAKSFKNFKVLV 136

Query: 94  LWGLTGITDKGVVQLISRASSLQHLNIGG---TFITDESLYAIANSCPQLKSIVLWSCR- 149
           L    G +  G+  + +   +L+ L++       ++   L    ++   L S+ +     
Sbjct: 137 LSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLAS 196

Query: 150 QVTGNGLLFLVNKCGRLESINVWG 173
           +V+ + L  LV +C  L+S+ +  
Sbjct: 197 EVSFSALERLVTRCPNLKSLKLNR 220

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 74.9 bits (184), Expect = 3e-16
 Identities = 21/155 (13%), Positives = 58/155 (37%), Gaps = 11/155 (7%)

Query: 28  QSLARRKNLSFAGWKMDDDSTARLVGYAYSLKELEISR------SRWGCQITDNGLYRMS 81
               + +++ +   +M + +   +     ++    +             +  D G    +
Sbjct: 369 MGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGF--GA 426

Query: 82  FAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIANSCPQLK 141
             +   +L  +SL GL  +TDK    + + A  ++ L++     +D  ++ + + C  L+
Sbjct: 427 IVEHCKDLRRLSLSGL--LTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLR 484

Query: 142 SIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRL 176
            + +  C       LL   +K   + S+ +    +
Sbjct: 485 KLEIRDCPFGD-KALLANASKLETMRSLWMSSCSV 518

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 74.2 bits (182), Expect = 5e-16
 Identities = 32/176 (18%), Positives = 59/176 (33%), Gaps = 23/176 (13%)

Query: 12  LLRVSSVCKKWKLGVKQSLARRKNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQ 71
              VS VCK W    +     R+ +          S A ++     ++ +E+        
Sbjct: 27  RNSVSLVCKSWY---EIERWCRRKVFIGNC--YAVSPATVIRRFPKVRSVELKGKPH--- 78

Query: 72  ITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLY 131
             D  L                  G  G     +  + S  + L+ + +    +TD+ L 
Sbjct: 79  FADFNLVPD---------------GWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLE 123

Query: 132 AIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPLDCFIGLLTI 187
            IA S    K +VL SC   + +GL  +   C  L+ +++  + +       L   
Sbjct: 124 LIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHF 179

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 70.3 bits (172), Expect = 9e-15
 Identities = 25/157 (15%), Positives = 53/157 (33%), Gaps = 24/157 (15%)

Query: 34  KNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSIS 93
             L+ +   +      +L+     L+ L +        I D GL     A    +L  + 
Sbjct: 292 TTLNLSYATVQSYDLVKLLCQCPKLQRLWVL-----DYIEDAGL--EVLASTCKDLRELR 344

Query: 94  LWGL--------TGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIANSCPQLKSIVL 145
           ++            +T++G+V +      L+ +      +T+ +L  IA + P +    L
Sbjct: 345 VFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRL 404

Query: 146 WSCR---------QVTGNGLLFLVNKCGRLESINVWG 173
                        +    G   +V  C  L  +++ G
Sbjct: 405 CIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG 441

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 69.9 bits (171), Expect = 2e-14
 Identities = 28/142 (19%), Positives = 45/142 (31%), Gaps = 5/142 (3%)

Query: 45  DDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKG 104
            +  A L+  A  L+EL               +Y               L G        
Sbjct: 224 LEKLATLLQRAPQLEELGTGGY---TAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAY 280

Query: 105 VVQLISRASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCG 164
           +  + S  S L  LN+    +    L  +   CP+L+   LW    +   GL  L + C 
Sbjct: 281 LPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQR--LWVLDYIEDAGLEVLASTCK 338

Query: 165 RLESINVWGTRLPLDCFIGLLT 186
            L  + V+ +   +      LT
Sbjct: 339 DLRELRVFPSEPFVMEPNVALT 360

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 69.9 bits (171), Expect = 2e-14
 Identities = 30/150 (20%), Positives = 59/150 (39%), Gaps = 14/150 (9%)

Query: 35  NLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISL 94
                  ++  D  + L       KEL      W        L   +     S LT+++L
Sbjct: 241 GTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWD--AVPAYL--PAVYSVCSRLTTLNL 296

Query: 95  WGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCR----- 149
              T +    +V+L+ +   LQ L +   +I D  L  +A++C  L+ + ++        
Sbjct: 297 SYAT-VQSYDLVKLLCQCPKLQRLWVL-DYIEDAGLEVLASTCKDLRELRVFPSEPFVME 354

Query: 150 ---QVTGNGLLFLVNKCGRLESINVWGTRL 176
               +T  GL+ +   C +LES+  +  ++
Sbjct: 355 PNVALTEQGLVSVSMGCPKLESVLYFCRQM 384

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 56.1 bits (135), Expect = 9e-10
 Identities = 15/125 (12%), Positives = 41/125 (32%), Gaps = 7/125 (5%)

Query: 45  DDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKG 104
           D     +  YA  ++ L ++        +D G+          +L  + +       DK 
Sbjct: 445 DKVFEYIGTYAKKMEMLSVA----FAGDSDLGM--HHVLSGCDSLRKLEIRD-CPFGDKA 497

Query: 105 VVQLISRASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCG 164
           ++   S+  +++ L +    ++  +   +    P+L   V+              V +  
Sbjct: 498 LLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAPDSRPESCPVERVF 557

Query: 165 RLESI 169
              ++
Sbjct: 558 IYRTV 562

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 75.3 bits (185), Expect = 1e-16
 Identities = 40/181 (22%), Positives = 68/181 (37%), Gaps = 24/181 (13%)

Query: 12  LLRVSSVCKKWKLGVKQSLARRKNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRW--- 68
           LL+VS VCK+W           + L   G  +  D T RL+           S       
Sbjct: 29  LLKVSGVCKRWYRLASDES-LWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLA 87

Query: 69  --------------GCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASS 114
                            I  + L+        S L ++SL GL  ++D  V   +++ S+
Sbjct: 88  EHFSPFRVQHMDLSNSVIEVSTLH--GILSQCSKLQNLSLEGLR-LSDPIV-NTLAKNSN 143

Query: 115 LQHLNIGG-TFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNK-CGRLESINVW 172
           L  LN+ G +  ++ +L  + +SC +L  + L  C   T   +   V      +  +N+ 
Sbjct: 144 LVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203

Query: 173 G 173
           G
Sbjct: 204 G 204

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 74.9 bits (184), Expect = 1e-16
 Identities = 27/188 (14%), Positives = 58/188 (30%), Gaps = 27/188 (14%)

Query: 10  VCLLRVSSVCKKWKLGVKQSLARRKNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRW- 68
           V   R         L    S  R +++  +   ++  +   ++     L+ L +   R  
Sbjct: 72  VIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLS 131

Query: 69  -------------------GC-QITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQL 108
                              GC   ++  L  +      S L  ++L      T+K V   
Sbjct: 132 DPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL--LSSCSRLDELNLSWCFDFTEKHVQVA 189

Query: 109 ISRAS-SLQHLNIGG--TFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGR 165
           ++  S ++  LN+ G    +    L  +   CP L  + L     +  +           
Sbjct: 190 VAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ-LNY 248

Query: 166 LESINVWG 173
           L+ +++  
Sbjct: 249 LQHLSLSR 256

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 72.2 bits (177), Expect = 1e-15
 Identities = 25/134 (18%), Positives = 53/134 (39%), Gaps = 8/134 (5%)

Query: 42  KMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLT-GI 100
              + +   L+     L EL +S   W    T+  + +++ A     +T ++L G    +
Sbjct: 154 GFSEFALQTLLSSCSRLDELNLS---WCFDFTEKHV-QVAVAHVSETITQLNLSGYRKNL 209

Query: 101 TDKGVVQLISRASSLQHLNIGG-TFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFL 159
               +  L+ R  +L HL++     + ++           L+ + L  C  +    LL L
Sbjct: 210 QKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ-LNYLQHLSLSRCYDIIPETLLEL 268

Query: 160 VNKCGRLESINVWG 173
                 L+++ V+G
Sbjct: 269 GE-IPTLKTLQVFG 281

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 56.0 bits (135), Expect = 6e-10
 Identities = 27/141 (19%), Positives = 55/141 (39%), Gaps = 16/141 (11%)

Query: 35  NLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISL 94
           NLS     +     + LV    +L  L++S S     + ++      F +  + L  +SL
Sbjct: 201 NLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV---MLKNDCF--QEFFQL-NYLQHLSL 254

Query: 95  WGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGN 154
                I  + +++L     +L+ L + G  + D +L  +  + P L+     +C   T  
Sbjct: 255 SRCYDIIPETLLEL-GEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQI----NCSHFTTI 308

Query: 155 GLLFLVNKCGRLESINVWGTR 175
                    G  ++  +WG +
Sbjct: 309 A----RPTIGNKKNQEIWGIK 325

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 74.2 bits (182), Expect = 5e-16
 Identities = 26/128 (20%), Positives = 52/128 (40%), Gaps = 6/128 (4%)

Query: 45  DDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKG 104
           D+    L+     L+            +TD GL  +   +   N+  + L G  G +D+G
Sbjct: 425 DNGVRSLLIGCKKLRRFAFYLR--QGGLTDLGLSYI--GQYSPNVRWMLL-GYVGESDEG 479

Query: 105 VVQLISRASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCR-QVTGNGLLFLVNKC 163
           +++      +LQ L + G   ++ ++ A     P L+ + +   R  +TG  L+ +    
Sbjct: 480 LMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPY 539

Query: 164 GRLESINV 171
             +E I  
Sbjct: 540 WNIELIPS 547

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 69.6 bits (170), Expect = 2e-14
 Identities = 26/141 (18%), Positives = 43/141 (30%), Gaps = 16/141 (11%)

Query: 45  DDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGI---- 100
                 L      L+ + +        IT+  L   S    + NL    L  L       
Sbjct: 367 QRGLIALAQGCQELEYMAVY----VSDITNESL--ESIGTYLKNLCDFRLVLLDREERIT 420

Query: 101 ---TDKGVVQLISRASSLQHLNI--GGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNG 155
               D GV  L+     L+          +TD  L  I    P ++ ++L      +  G
Sbjct: 421 DLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV-GESDEG 479

Query: 156 LLFLVNKCGRLESINVWGTRL 176
           L+     C  L+ + + G   
Sbjct: 480 LMEFSRGCPNLQKLEMRGCCF 500

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 68.8 bits (168), Expect = 4e-14
 Identities = 31/181 (17%), Positives = 62/181 (34%), Gaps = 24/181 (13%)

Query: 10  VCLLRVSSVCKKWKLGVKQSLARRKNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWG 69
           +C L +S +       +    A+ + L      ++ +    L+    +L+ LE       
Sbjct: 272 LCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR----- 326

Query: 70  CQITDNGLYRMSFAKCISNLTSISLWG----------LTGITDKGVVQLISRASSLQHLN 119
             I D GL     A+    L  + +               ++ +G++ L      L+++ 
Sbjct: 327 NVIGDRGL--EVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMA 384

Query: 120 IGGTFITDESLYAIANSCPQLKSIVLWSCR-------QVTGNGLLFLVNKCGRLESINVW 172
           +  + IT+ESL +I      L    L               NG+  L+  C +L     +
Sbjct: 385 VYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFY 444

Query: 173 G 173
            
Sbjct: 445 L 445

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 68.4 bits (167), Expect = 5e-14
 Identities = 22/137 (16%), Positives = 55/137 (40%), Gaps = 9/137 (6%)

Query: 32  RRKNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTS 91
           RR         + D   + +  Y+ +++ + +         +D GL  M F++   NL  
Sbjct: 439 RRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLG----YVGESDEGL--MEFSRGCPNLQK 492

Query: 92  ISLWGLTGITDKGVVQLISRASSLQHLNIGGTF--ITDESLYAIANSCPQLKSIVLWSCR 149
           + + G    +++ +   +++  SL++L + G    +T + L  +A     ++ I      
Sbjct: 493 LEMRG-CCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVP 551

Query: 150 QVTGNGLLFLVNKCGRL 166
           +V   G +  +     +
Sbjct: 552 EVNQQGEIREMEHPAHI 568

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 64.6 bits (157), Expect = 1e-12
 Identities = 29/182 (15%), Positives = 63/182 (34%), Gaps = 11/182 (6%)

Query: 10  VCLLRVSSVCKKWKLGVKQSLARRKNLSFAGWKMDDDSTARLV-GYAYSLKELEISRSRW 68
           +           W   +  +L + K++ F    + D    RL    A  L+ L++ +   
Sbjct: 91  LIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCS- 149

Query: 69  GCQITDNGLYRMSFAKCISNLTSISLWG--LTGITDKGVVQLISRASSLQHLNI---GGT 123
               T +GL  +S       + ++ +     +    K + +L    +SL+ LN       
Sbjct: 150 --GFTTDGL--LSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFA 205

Query: 124 FITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPLDCFIG 183
            I+ + L  IA +C  L S+ +     +   G              ++       + ++ 
Sbjct: 206 KISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMN 265

Query: 184 LL 185
           L+
Sbjct: 266 LV 267

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 64.2 bits (156), Expect = 2e-12
 Identities = 25/177 (14%), Positives = 58/177 (32%), Gaps = 24/177 (13%)

Query: 12  LLRVSSVCKKWKLGVKQSLARRKNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQ 71
               S VC++W   +         ++       D  + R      +L+ L++        
Sbjct: 34  RDSASLVCRRW-FKIDSETREHVTMALCYTATPDRLSRRFP----NLRSLKLKGKPR--- 85

Query: 72  ITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLY 131
                L                     G     V ++ +    L+ ++     ++D  L 
Sbjct: 86  AAMFNL---------------IPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLD 130

Query: 132 AIANS-CPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPLDCFIGLLTI 187
            +A +    L+++ L  C   T +GLL +V  C +++++ +  +         L  +
Sbjct: 131 RLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHEL 187

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 59.6 bits (144), Expect = 6e-11
 Identities = 17/154 (11%), Positives = 49/154 (31%), Gaps = 11/154 (7%)

Query: 34  KNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSIS 93
            ++    +++ +         A +L+E           + +  +        +     + 
Sbjct: 223 VSVKVGDFEILEL--VGFFKAAANLEEFCGGSLNEDIGMPEKYMN-------LVFPRKLC 273

Query: 94  LWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTG 153
             GL+ +    +  L   A+ ++ L++    +  E    +   CP L+ +   +   +  
Sbjct: 274 RLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV--IGD 331

Query: 154 NGLLFLVNKCGRLESINVWGTRLPLDCFIGLLTI 187
            GL  L   C +L+ + +               +
Sbjct: 332 RGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLV 365

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 59.1 bits (143), Expect = 2e-11
 Identities = 21/133 (15%), Positives = 43/133 (32%), Gaps = 12/133 (9%)

Query: 31  ARRKNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLT 90
           A  +      W+ D +         Y ++ ++ +       I   G       + +  + 
Sbjct: 36  AMVRYHGQQRWQKDYNHLPTGPLDKYKIQAIDAT----DSCIMSIG---FDHMEGLQYVE 88

Query: 91  SISLWGLTGITDKG---VVQLISRASSLQHLNIGG-TFITDESLYAIANSCPQLKSIVLW 146
            I L     I D     + QL +   S+  + I     +TD+ + A+ +    LK + L 
Sbjct: 89  KIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHH-FRNLKYLFLS 147

Query: 147 SCRQVTGNGLLFL 159
               V     +  
Sbjct: 148 DLPGVKEKEKIVQ 160

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 44.8 bits (106), Expect = 2e-06
 Identities = 14/90 (15%), Positives = 33/90 (36%), Gaps = 7/90 (7%)

Query: 88  NLTSISLWGLTGITDKGVVQLISRASSLQHLNIGG-TFITDESLYAIA---NSCPQLKSI 143
            + +I     + I   G    +     ++ + +    +I D  L  ++   N    +  +
Sbjct: 62  KIQAIDATD-SCIMSIGF-DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEM 119

Query: 144 VLWSCRQVTGNGLLFLVNKCGRLESINVWG 173
            + SC  VT  G++ L      L+ + +  
Sbjct: 120 EIISCGNVTDKGIIALH-HFRNLKYLFLSD 148

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 42.5 bits (100), Expect = 2e-05
 Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 7/72 (9%)

Query: 49  ARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQL 108
           ++L     S+ E+EI        +TD G+  ++      NL  + L  L G+ +K  +  
Sbjct: 107 SQLENLQKSMLEMEII---SCGNVTDKGI--IALHHF-RNLKYLFLSDLPGVKEKEKIVQ 160

Query: 109 ISRASSLQHLNI 120
             +  SL  L +
Sbjct: 161 AFKT-SLPSLEL 171

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 53.9 bits (130), Expect = 4e-09
 Identities = 17/101 (16%), Positives = 37/101 (36%), Gaps = 13/101 (12%)

Query: 57  SLKELEISRSRWGCQITDNGLYRMSFA-KCISNLTSISLWGLTGITDKGVVQLISRA--- 112
            L+ +   R     ++ +  +   +   +    L ++ +    GI  +G+  L+      
Sbjct: 160 PLRSIICGR----NRLENGSMKEWAKTFQSHRLLHTVKMVQ-NGIRPEGIEHLLLEGLAY 214

Query: 113 -SSLQHLNIGGTFITDESLYAIAN---SCPQLKSIVLWSCR 149
              L+ L++     T     A+A    S P L+ + L  C 
Sbjct: 215 CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL 255

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 44.7 bits (106), Expect = 5e-06
 Identities = 17/102 (16%), Positives = 33/102 (32%), Gaps = 19/102 (18%)

Query: 57  SLKELEISRSRWGCQITDNGLYRMSFAKCI---SNLTSISLWGLTGITDKGVVQLIS--- 110
            LK L++         T  G    + A  +    NL  + L     ++ +G   ++    
Sbjct: 217 ELKVLDLQ----DNTFTHLGS--SALAIALKSWPNLRELGLND-CLLSARGAAAVVDAFS 269

Query: 111 --RASSLQHLNIGGTFITDESLYAIANS----CPQLKSIVLW 146
                 LQ L +    I  +++  +        P L  + L 
Sbjct: 270 KLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELN 311

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 38.5 bits (90), Expect = 6e-04
 Identities = 18/141 (12%), Positives = 42/141 (29%), Gaps = 23/141 (16%)

Query: 57  SLKELEISRSRWGCQITDNGLYRMSFAKCI---SNLTSISLWGLTGITDKGV---VQLIS 110
            L+  E S    G    +         + +     L ++ L              +  +S
Sbjct: 61  DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD-NAFGPTAQEPLIDFLS 119

Query: 111 RASSLQHLNIGGTFITDESLYAIANS------------CPQLKSIVLWSCRQVTGNGLLF 158
           + + L+HL +    +  ++   IA +             P L+SI+    R +    +  
Sbjct: 120 KHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-LENGSMKE 178

Query: 159 L---VNKCGRLESINVWGTRL 176
                     L ++ +    +
Sbjct: 179 WAKTFQSHRLLHTVKMVQNGI 199

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 46.1 bits (108), Expect = 2e-06
 Identities = 15/90 (16%), Positives = 35/90 (38%), Gaps = 8/90 (8%)

Query: 57  SLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRA---S 113
           +LK L I       +  +  +     +  +  L ++ +     +TD+G   L+       
Sbjct: 253 NLKWLGIV----DAEEQNVVVEMFLESDILPQLETMDI-SAGVLTDEGARLLLDHVDKIK 307

Query: 114 SLQHLNIGGTFITDESLYAIANSCPQLKSI 143
            L+ +N+   +++DE    +  S P    +
Sbjct: 308 HLKFINMKYNYLSDEMKKELQKSLPMKIDV 337

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 39.2 bits (90), Expect = 4e-04
 Identities = 25/131 (19%), Positives = 48/131 (36%), Gaps = 18/131 (13%)

Query: 58  LKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLW-------GLTGITDKGVVQLIS 110
           LK LEI        + D+ +  +  +    NL  + L+           +     +    
Sbjct: 195 LKSLEII----SGGLPDSVVEDILGSDL-PNLEKLVLYVGVEDYGFDGDMNVFRPLFSKD 249

Query: 111 RASSLQHLNIGGTFITDESLYAIANS--CPQLKSIVLWSCRQVTGNGLLFLVNKCGR--- 165
           R  +L+ L I      +  +     S   PQL+++ + S   +T  G   L++   +   
Sbjct: 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDI-SAGVLTDEGARLLLDHVDKIKH 308

Query: 166 LESINVWGTRL 176
           L+ IN+    L
Sbjct: 309 LKFINMKYNYL 319

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 44.2 bits (105), Expect = 4e-06
 Identities = 19/108 (17%), Positives = 41/108 (37%), Gaps = 17/108 (15%)

Query: 57  SLKELEISRSRWGCQITDNGLYRMSFAKCISN---LTSISLWGLTGITDKGVVQLISRA- 112
            L+E+ ++       I    L   + A+ +     +   S+ G T   D      ++   
Sbjct: 37  DLEEVNLNNI---MNIPVPTL--KACAEALKTNTYVKKFSIVG-TRSNDPVA-FALAEML 89

Query: 113 ---SSLQHLNIGGTFITDESLYAIANSCPQ---LKSIVLWSCRQVTGN 154
              ++L+ LN+   FI+   + A+  +      L  + + +  Q  GN
Sbjct: 90  KVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGN 137

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 44.6 bits (106), Expect = 6e-06
 Identities = 17/104 (16%), Positives = 38/104 (36%), Gaps = 19/104 (18%)

Query: 57  SLKELEISRSRWGCQITDNGLYRMSFAKCIS---NLTSISLWGLTGITDKGVVQLISRA- 112
            L+ L +      C  T        F+  ++    L  + +     + D GV + + +  
Sbjct: 314 QLESLWVK----SCSFTAACC--SHFSSVLAQNRFLLELQISN-NRLEDAGV-RELCQGL 365

Query: 113 ----SSLQHLNIGGTFITDESLYAIAN---SCPQLKSIVLWSCR 149
               S L+ L +    ++D S  ++A    +   L+ + L +  
Sbjct: 366 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 409

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 24/139 (17%), Positives = 43/139 (30%), Gaps = 16/139 (11%)

Query: 57  SLKELEISRSRWGCQITDNGLYRMSFA-KCISNLTSISLWGLTGITDKGVVQL----ISR 111
            L+ L I      C IT  G   +    +   +L  +SL G   + D+G   L    +  
Sbjct: 257 RLRTLWIW----ECGITAKGCGDLCRVLRAKESLKELSLAG-NELGDEGARLLCETLLEP 311

Query: 112 ASSLQHLNIGGTFITDESLYAIAN---SCPQLKSIVLWSCR-QVTGNGLL--FLVNKCGR 165
              L+ L +     T       ++       L  + + + R +  G   L   L      
Sbjct: 312 GCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSV 371

Query: 166 LESINVWGTRLPLDCFIGL 184
           L  + +    +       L
Sbjct: 372 LRVLWLADCDVSDSSCSSL 390

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 20/132 (15%), Positives = 46/132 (34%), Gaps = 18/132 (13%)

Query: 57  SLKELEISRSRWGCQITDNGLYRMS--FAKCISNLTSISLWGLTGITDKGVVQL---ISR 111
           +L EL +       ++ D G++ +          +  +SL     +T  G   L   +  
Sbjct: 57  ALAELNLR----SNELGDVGVHCVLQGLQTPSCKIQKLSLQN-CCLTGAGCGVLSSTLRT 111

Query: 112 ASSLQHLNIGGTFITDESLYAIA----NSCPQLKSIVLWSCRQVTGNGLLFLVN---KCG 164
             +LQ L++    + D  L  +     +   +L+ + L  C  ++      L +      
Sbjct: 112 LPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASCEPLASVLRAKP 170

Query: 165 RLESINVWGTRL 176
             + + V    +
Sbjct: 171 DFKELTVSNNDI 182

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 27/139 (19%), Positives = 48/139 (34%), Gaps = 16/139 (11%)

Query: 57  SLKELEISRSRWGCQITDNGLYRMSFA-KCISNLTSISLWGLTGITDKGVVQLISRA--- 112
            L+ L++      C +T +    +       ++L  ++L     + D G+ +L       
Sbjct: 200 QLEALKLE----SCGVTSDNCRDLCGIVASKASLRELALGS-NKLGDVGMAELCPGLLHP 254

Query: 113 -SSLQHLNIGGTFITDESLYAIAN---SCPQLKSIVLWSCR-QVTGNGLLF--LVNKCGR 165
            S L+ L I    IT +    +     +   LK + L        G  LL   L+    +
Sbjct: 255 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQ 314

Query: 166 LESINVWGTRLPLDCFIGL 184
           LES+ V        C    
Sbjct: 315 LESLWVKSCSFTAACCSHF 333

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 38.8 bits (91), Expect = 5e-04
 Identities = 18/132 (13%), Positives = 48/132 (36%), Gaps = 18/132 (13%)

Query: 57  SLKELEISRSRWGCQITDNGLYRMSFA-KCISNLTSISLWGLTGITDKGVVQ----LISR 111
            L++L++      C ++      ++   +   +   +++     I + GV      L   
Sbjct: 143 RLEKLQLE----YCSLSAASCEPLASVLRAKPDFKELTVSN-NDINEAGVRVLCQGLKDS 197

Query: 112 ASSLQHLNIGGTFITDESLYAIAN---SCPQLKSIVLWSCRQVTGNGLLFLV----NKCG 164
              L+ L +    +T ++   +     S   L+ + L    ++   G+  L     +   
Sbjct: 198 PCQLEALKLESCGVTSDNCRDLCGIVASKASLRELAL-GSNKLGDVGMAELCPGLLHPSS 256

Query: 165 RLESINVWGTRL 176
           RL ++ +W   +
Sbjct: 257 RLRTLWIWECGI 268

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 38.4 bits (90), Expect = 7e-04
 Identities = 16/95 (16%), Positives = 37/95 (38%), Gaps = 13/95 (13%)

Query: 57  SLKELEISRSRWGCQITDNGLYRMSFA-KCISNLTSISLWGLTGITDKGVVQLI----SR 111
            L+ L ++     C ++D+    ++       +L  + L     + D G++QL+      
Sbjct: 371 VLRVLWLA----DCDVSDSSCSSLAATLLANHSLRELDLSN-NCLGDAGILQLVESVRQP 425

Query: 112 ASSLQHLNIGGTFITDESLYAIAN---SCPQLKSI 143
              L+ L +   + ++E    +       P L+ I
Sbjct: 426 GCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 460

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 15/103 (14%), Positives = 38/103 (36%), Gaps = 15/103 (14%)

Query: 57  SLKELEISRSRWGCQITDNGLYRMSFA--KCISNLTSISLWGLTGITDKGVVQ----LIS 110
            +  L++S       +       +  A     +++TS++L G   +  K   +    L +
Sbjct: 23  GVTSLDLS----LNNLYSISTVELIQAFANTPASVTSLNLSG-NSLGFKNSDELVQILAA 77

Query: 111 RASSLQHLNIGGTFITDESLYAIA----NSCPQLKSIVLWSCR 149
             +++  LN+ G F++ +S   +          +  + L    
Sbjct: 78  IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND 120

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 18/134 (13%), Positives = 47/134 (35%), Gaps = 19/134 (14%)

Query: 57  SLKELEISRSRWGCQITDNGLYRMS--FAKCISNLTSISLWGLTGITDKGVVQLI----S 110
           ++  L +     G  +       ++   A   +++TS+ L     +  K   +L     S
Sbjct: 168 NVNSLNLR----GNNLASKNCAELAKFLASIPASVTSLDLSA-NLLGLKSYAELAYIFSS 222

Query: 111 RASSLQHLNIGGTFITDESLYAIA---NSCPQLKSIVLWSC--RQVTGNGLLFLVN---K 162
             + +  LN+    +   SL  +    +S   L+++ L     + ++      L      
Sbjct: 223 IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPN 282

Query: 163 CGRLESINVWGTRL 176
             ++  ++  G  +
Sbjct: 283 IQKIILVDKNGKEI 296

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 41.6 bits (98), Expect = 6e-05
 Identities = 14/103 (13%), Positives = 33/103 (32%), Gaps = 15/103 (14%)

Query: 57  SLKELEISRSRWGCQITDNGLYRMS--FAKCISNLTSISLWGLTGITDKGVVQLI----S 110
           ++  L +S    G  ++      +    A     +T + L      + K   +      +
Sbjct: 81  NVTSLNLS----GNFLSYKSSDELVKTLAAIPFTITVLDLGW-NDFSSKSSSEFKQAFSN 135

Query: 111 RASSLQHLNIGGTFITDESLYAIA----NSCPQLKSIVLWSCR 149
             +S+  LN+ G  +  +S   +          + S+ L    
Sbjct: 136 LPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN 178

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 42.0 bits (99), Expect = 4e-05
 Identities = 16/102 (15%), Positives = 36/102 (35%), Gaps = 15/102 (14%)

Query: 57  SLKELEISRSRWGCQITDNGLYRMSFA--KCISNLTSISLWGLTGITDKGVVQLISRA-- 112
             ++L +        +       +          +T++ L     +T  GV  ++     
Sbjct: 127 RARKLGLQ----LNSLGPEACKDLRDLLLHDQCQITTLRLSN-NPLTAAGV-AVLMEGLA 180

Query: 113 --SSLQHLNIGGTFITDESLYAIAN---SCPQLKSIVLWSCR 149
             +S+ HL++  T + DE L  +A       QL+ + +    
Sbjct: 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG 222

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 20/132 (15%), Positives = 49/132 (37%), Gaps = 21/132 (15%)

Query: 57  SLKELEISRSRWGCQITDNGLYRMSFA--KCISNLTSISLWGLTGITDKGVVQLISRASS 114
           SL++L ++    G ++T      ++         L  ++L     +   G+  L+     
Sbjct: 73  SLRQLNLA----GVRMTPVKCTVVAAVLGSGRHALDEVNLAS-CQLDPAGLRTLLPVFLR 127

Query: 115 LQHLNIGGTFITDESLYAIA-----NSCPQLKSIVLWSCRQVTGNGLLFL-----VNKCG 164
            + L +    +  E+   +      + C Q+ ++ L +   +T  G+  L      N   
Sbjct: 128 ARKLGLQLNSLGPEACKDLRDLLLHDQC-QITTLRLSNN-PLTAAGVAVLMEGLAGNTS- 184

Query: 165 RLESINVWGTRL 176
            +  +++  T L
Sbjct: 185 -VTHLSLLHTGL 195

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 38.5 bits (90), Expect = 6e-04
 Identities = 18/115 (15%), Positives = 36/115 (31%), Gaps = 20/115 (17%)

Query: 57  SLKELEISRSRWGCQITDNGLYRMSFAKCI---SNLTSISLWGLTGITDKGVVQLISRA- 112
           S+  L +        + D GL     A  +     L  +++    G  D      ++RA 
Sbjct: 184 SVTHLSLL----HTGLGDEGL--ELLAAQLDRNRQLQELNVAY-NGAGDTAA-LALARAA 235

Query: 113 ---SSLQHLNIGGTFITDESLYAIA-----NSCPQLKSIVLWSCRQVTGNGLLFL 159
               SL+ L++    ++ E    +              + L     V+    + L
Sbjct: 236 REHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVIL 290

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Length = 197

 Score = 39.8 bits (93), Expect = 2e-04
 Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 8/84 (9%)

Query: 57  SLKELEISRSRWGCQITDNGLYRMSFAKCI-SNLTSISLWGLTGITDKGVVQL---ISRA 112
            LKE+ I+      +++   +  +  A C   ++   SL   T I+D     L   I  +
Sbjct: 42  DLKEVNIN---NMKRVSKERIRSLIEAACNSKHIEKFSLAN-TAISDSEARGLIELIETS 97

Query: 113 SSLQHLNIGGTFITDESLYAIANS 136
            SL+ LN+   F+T E L  +  S
Sbjct: 98  PSLRVLNVESNFLTPELLARLLRS 121

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 12/99 (12%)

Query: 54  YAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRAS 113
           YA+++K+L I+        T+      +    +SNL  + + G   +T   +  L S  +
Sbjct: 64  YAHNIKDLTIN----NIHATN-----YNPISGLSNLERLRIMG-KDVTSDKIPNL-SGLT 112

Query: 114 SLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVT 152
           SL  L+I  +   D  L  I    P++ SI L     +T
Sbjct: 113 SLTLLDISHSAHDDSILTKINT-LPKVNSIDLSYNGAIT 150

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	187
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.9
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.78
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.73
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.68
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.66
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	99.63
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	99.63
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.62
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.61
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.57
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	99.56
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.53
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.53
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.49
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.48
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	99.36
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.34
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	99.29
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.26
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.25
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.1
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.1
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.09
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	99.04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.03
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.95
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.9
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.88
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.84
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.81
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.81
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.76
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.76
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.71
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.71
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.7
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.68
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.67
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.65
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.63
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.63
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.62
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.59
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.58
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.58
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.58
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.58
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.57
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.57
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.56
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.55
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.55
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	98.55
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.55
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.55
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.53
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.53
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.52
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.51
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.5
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.49
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.48
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.48
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.48
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.48
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	98.47
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.46
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.46
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.46
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.45
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.45
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.45
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.45
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.44
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.43
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.41
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.41
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.41
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.4
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.39
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.39
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.39
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.39
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.38
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.37
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.36
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.35
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.35
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.35
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.34
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.34
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.33
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.31
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.31
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.3
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.3
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.29
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.29
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.29
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.29
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.27
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.26
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.25
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.25
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.24
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	98.23
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.23
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.22
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.22
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.22
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.21
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.21
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.2
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.2
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.19
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.18
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.17
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.16
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.03
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.03
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	98.02
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.0
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	97.87
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.83
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.82
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	97.8
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	97.78
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	97.73
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	97.7
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	97.65
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.65
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.58
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	97.52
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	97.48
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	97.42
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	97.29
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	97.29
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	97.26
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	97.22
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.19
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.17
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	97.1
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	97.0
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	96.87
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	96.75
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	96.72
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	96.36
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	96.29
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	95.98
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	94.76
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	93.24
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	92.83
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	92.45
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	90.04
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	88.91
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	87.7
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	84.4
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	81.33

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.90  E-value=2.6e-22  Score=151.54  Aligned_cols=177  Identities=21%  Similarity=0.348  Sum_probs=129.8

Q ss_pred             CccccccchhHHHHHHHhhHHHHHHhh-hhhcccce--------------------------------------------
Q 037671            1 FLFVFVIPFVCLLRVSSVCKKWKLGVK-QSLARRKN--------------------------------------------   35 (187)
Q Consensus         1 ~I~~~l~~~~~~~~~~~vck~w~~~~~-~~l~~~~~--------------------------------------------   35 (187)
                      +||+||+ .+|+.++++|||+|++++. +.+|+..+                                            
T Consensus        19 ~If~~L~-~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~   97 (336)
T 2ast_B           19 GIFSCLC-LPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQH   97 (336)
T ss_dssp             HHHTTSC-HHHHHHTTSSCHHHHHHHTCSTTSSEEECTTCBCCHHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCE
T ss_pred             HHHHhCC-HHHHHHHHHHHHHHHHHhcCchhheeeccccccCCHHHHHhhhhccceEEEcCCccccccchhhccCCCCCE
Confidence            4899999 5999999999999999763 44454321                                            


Q ss_pred             eeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCC
Q 037671           36 LSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSL  115 (187)
Q Consensus        36 l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L  115 (187)
                      +++.++.++...+......+++|++|++++|    .+++.....+   ..+++|++|++++|..+++.++......+++|
T Consensus        98 L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~----~l~~~~~~~l---~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L  170 (336)
T 2ast_B           98 MDLSNSVIEVSTLHGILSQCSKLQNLSLEGL----RLSDPIVNTL---AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  170 (336)
T ss_dssp             EECTTCEECHHHHHHHHTTBCCCSEEECTTC----BCCHHHHHHH---TTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             EEccCCCcCHHHHHHHHhhCCCCCEEeCcCc----ccCHHHHHHH---hcCCCCCEEECCCCCCCCHHHHHHHHhcCCCC
Confidence            2223333444445666666777777777754    5666666555   23788888888888558887777777778888


Q ss_pred             CEEEecCC-CCCHHHHHHHHhcCC-ccceeeccCCC-CCcHHHHHHHHhcCCCCcEEEeeCCC-CCHHHHHhhh
Q 037671          116 QHLNIGGT-FITDESLYAIANSCP-QLKSIVLWSCR-QVTGNGLLFLVNKCGRLESINVWGTR-LPLDCFIGLL  185 (187)
Q Consensus       116 ~~L~l~~~-~~~~~~~~~l~~~~~-~L~~L~l~~~~-~~~~~~~~~l~~~~~~L~~L~l~~~~-i~~~~~~~L~  185 (187)
                      ++|+++++ .+++.++......+| +|++|++++|. .+++.++..+...+|+|++|++++|. +++++...+.
T Consensus       171 ~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~  244 (336)
T 2ast_B          171 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF  244 (336)
T ss_dssp             CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG
T ss_pred             CEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHh
Confidence            88888887 888877777777788 88888888865 67777777777778888888888887 7777665543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.78  E-value=7.8e-19  Score=141.60  Aligned_cols=165  Identities=21%  Similarity=0.259  Sum_probs=84.4

Q ss_pred             CccccccchhHHHHHHHhhHHHHHHhhhhhcccceeeecccccC------------------------------------
Q 037671            1 FLFVFVIPFVCLLRVSSVCKKWKLGVKQSLARRKNLSFAGWKMD------------------------------------   44 (187)
Q Consensus         1 ~I~~~l~~~~~~~~~~~vck~w~~~~~~~l~~~~~l~~~~~~l~------------------------------------   44 (187)
                      +||+||+..+|+.++++|||+|+++. .  +.++++.+.++...                                    
T Consensus        16 ~If~~L~~~~d~~~~s~vck~W~~~~-~--~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~   92 (594)
T 2p1m_B           16 HVFSFIQLDKDRNSVSLVCKSWYEIE-R--WCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGY   92 (594)
T ss_dssp             HHHHTCCCHHHHHHHHTSCHHHHHHH-H--HHCCEEEESSTTSSCHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCB
T ss_pred             HHHhhcCCchhHHHHHHHHHHHHHhh-h--hhceEEeeccccccCHHHHHhhCCCceEEeccCCCchhhcccccccccch
Confidence            48999994499999999999999972 1  22233433332111                                    


Q ss_pred             -HHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCC
Q 037671           45 -DDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGT  123 (187)
Q Consensus        45 -~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  123 (187)
                       ...+..+...+++|++|+++++    .+++..+..+  ...+++|++|++++|..++..++..+...+++|++|+++++
T Consensus        93 ~~~~l~~l~~~~~~L~~L~L~~~----~~~~~~~~~l--~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~  166 (594)
T 2p1m_B           93 VYPWIEAMSSSYTWLEEIRLKRM----VVTDDCLELI--AKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRES  166 (594)
T ss_dssp             CHHHHHHHHHHCTTCCEEEEESC----BCCHHHHHHH--HHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTC
T ss_pred             hhHHHHHHHHhCCCCCeEEeeCc----EEcHHHHHHH--HHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCC
Confidence             1122333344445555555432    3444444443  12245555555555533444445444444555555555544


Q ss_pred             CCCHHH---HHHHHhcCCccceeeccCCC-CCcHHHHHHHHhcCCCCcEEEeeCC
Q 037671          124 FITDES---LYAIANSCPQLKSIVLWSCR-QVTGNGLLFLVNKCGRLESINVWGT  174 (187)
Q Consensus       124 ~~~~~~---~~~l~~~~~~L~~L~l~~~~-~~~~~~~~~l~~~~~~L~~L~l~~~  174 (187)
                      .+++.+   +..+...+++|++|++++|. .+++..+..+...+|+|++|++++|
T Consensus       167 ~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          167 DVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA  221 (594)
T ss_dssp             EEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred             ccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence            333222   22222334455555555442 3445555555555666666666665

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.73  E-value=1.7e-17  Score=133.78  Aligned_cols=166  Identities=16%  Similarity=0.240  Sum_probs=79.7

Q ss_pred             Cccccc-cchhHHHHHHHhhHHHHHHhhhhhcccceeeecccccCHHHHHHHHhcCCCCcEEEeeeccCC----------
Q 037671            1 FLFVFV-IPFVCLLRVSSVCKKWKLGVKQSLARRKNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWG----------   69 (187)
Q Consensus         1 ~I~~~l-~~~~~~~~~~~vck~w~~~~~~~l~~~~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~----------   69 (187)
                      +||+|| + .+++.++++|||+|+.+.   .+.++.+...++.  ......+...+++|++|+++++...          
T Consensus        23 ~I~~~L~~-~~d~~~~s~vck~W~~~~---~~~~~~l~~~~~~--~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~   96 (592)
T 3ogk_B           23 QVMTYITD-PKDRDSASLVCRRWFKID---SETREHVTMALCY--TATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENW   96 (592)
T ss_dssp             HHHTTCCC-HHHHHHHTTSCHHHHHHH---HHHCCEEEESCGG--GSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTS
T ss_pred             HHHHhcCC-HHHHHHHHHHhHHHHHhh---hccccEEEEeecc--ccChHHHHHhCCCCeEEEecCCcchhhcccccccc
Confidence            489999 6 699999999999999973   2233334333221  0112334444555555555432100          


Q ss_pred             cccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCC-CCEEEecCCC-CCHHHHHHHHhcCCccceeeccC
Q 037671           70 CQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASS-LQHLNIGGTF-ITDESLYAIANSCPQLKSIVLWS  147 (187)
Q Consensus        70 ~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~-~~~~~~~~l~~~~~~L~~L~l~~  147 (187)
                      ..+...++..+  ...+++|++|+++++. +++..+..+...+++ |+.|+++++. +++.++..+...||+|++|++++
T Consensus        97 ~~~~~~~l~~l--~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~  173 (592)
T 3ogk_B           97 GGYVTPWVTEI--SNNLRQLKSVHFRRMI-VSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEE  173 (592)
T ss_dssp             CCBCHHHHHHH--HHHCTTCCEEEEESCB-CCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTT
T ss_pred             cccchHHHHHH--HhhCCCCCeEEeeccE-ecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECcc
Confidence            00011111111  1234555555555543 555544444443333 5555555532 44444444444455555555554


Q ss_pred             CCCCcHHH---HHHHHhcCCCCcEEEeeCCCC
Q 037671          148 CRQVTGNG---LLFLVNKCGRLESINVWGTRL  176 (187)
Q Consensus       148 ~~~~~~~~---~~~l~~~~~~L~~L~l~~~~i  176 (187)
                      | .+++.+   +..+...+++|++|++++|.+
T Consensus       174 ~-~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~  204 (592)
T 3ogk_B          174 S-SFSEKDGKWLHELAQHNTSLEVLNFYMTEF  204 (592)
T ss_dssp             C-EEECCCSHHHHHHHHHCCCCCEEECTTCCC
T ss_pred             c-cccCcchhHHHHHHhcCCCccEEEeeccCC
Confidence            3 332222   333334444444444444433

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.68  E-value=7.5e-16  Score=118.00  Aligned_cols=147  Identities=18%  Similarity=0.184  Sum_probs=106.5

Q ss_pred             ceeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhh--ccCCCccEEEecCCCCCCHHHHHHHH--
Q 037671           34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFA--KCISNLTSISLWGLTGITDKGVVQLI--  109 (187)
Q Consensus        34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~--  109 (187)
                      ..+++.++.+++.....+...+++|+.|++++|    .+++.+...++..  ..+++|++|++++|. +++.++..+.  
T Consensus       104 ~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n----~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~  178 (372)
T 3un9_A          104 DEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN----SLGPEACKDLRDLLLHDQCQITTLRLSNNP-LTAAGVAVLMEG  178 (372)
T ss_dssp             EEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS----CCCHHHHHHHHHHHHSTTCCCCEEECCSSC-CHHHHHHHHHHH
T ss_pred             eEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC----CCCHHHHHHHHHHHHhcCCccceeeCCCCC-CChHHHHHHHHH
Confidence            345666666666666666665666777777654    6777776666432  246778888888885 8777766554  


Q ss_pred             -hcCCCCCEEEecCCCCCHHHHHHHH---hcCCccceeeccCCCCCcHHHHHHHHh---cCCCCcEEEeeCCCCCHHHHH
Q 037671          110 -SRASSLQHLNIGGTFITDESLYAIA---NSCPQLKSIVLWSCRQVTGNGLLFLVN---KCGRLESINVWGTRLPLDCFI  182 (187)
Q Consensus       110 -~~~~~L~~L~l~~~~~~~~~~~~l~---~~~~~L~~L~l~~~~~~~~~~~~~l~~---~~~~L~~L~l~~~~i~~~~~~  182 (187)
                       ..+++|++|++++|.+++.++..++   ..++.|++|++++| .+++.++..++.   .+++|++|++++|.+++.+..
T Consensus       179 L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~  257 (372)
T 3un9_A          179 LAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN-GAGDTAALALARAAREHPSLELLHLYFNELSSEGRQ  257 (372)
T ss_dssp             HHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHH
T ss_pred             HhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHH
Confidence             4578899999999888888876665   34567999999885 888888777765   358899999999999998887


Q ss_pred             hhhc
Q 037671          183 GLLT  186 (187)
Q Consensus       183 ~L~~  186 (187)
                      .|..
T Consensus       258 ~L~~  261 (372)
T 3un9_A          258 VLRD  261 (372)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7653

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.66  E-value=3.8e-15  Score=120.10  Aligned_cols=145  Identities=19%  Similarity=0.245  Sum_probs=98.3

Q ss_pred             ecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccch----hhhhhhhhhccCCCccEEEecCCC-CCCHHHHHHHHhcC
Q 037671           38 FAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITD----NGLYRMSFAKCISNLTSISLWGLT-GITDKGVVQLISRA  112 (187)
Q Consensus        38 ~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~----~~l~~l~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~  112 (187)
                      +....+++..+..+...+++|++|+++++.....+++    .++..+  ...+++|++|+++.|. .+++.++..+...+
T Consensus       385 l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~--~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~  462 (592)
T 3ogk_B          385 VYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSL--LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYS  462 (592)
T ss_dssp             EEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHH--HHHCTTCCEEEEECCGGGCCHHHHHHHHHSC
T ss_pred             eecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHH--HHhCCCCCEEEEecCCCCccHHHHHHHHHhC
Confidence            3333444444444444455555555542210113332    233333  2346777777776554 26777777777778


Q ss_pred             CCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHhhh
Q 037671          113 SSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPLDCFIGLL  185 (187)
Q Consensus       113 ~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~L~  185 (187)
                      ++|+.|+++++.+++.++..+...|++|++|++++|. +++.++..++..+++|++|++++|+++++|+..++
T Consensus       463 ~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~  534 (592)
T 3ogk_B          463 PNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQ  534 (592)
T ss_dssp             TTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGG
T ss_pred             ccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHH
Confidence            8888888888888888888888888888888888874 78888888888888888899988888888877664

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=99.63  E-value=1.9e-15  Score=103.29  Aligned_cols=103  Identities=18%  Similarity=0.207  Sum_probs=66.8

Q ss_pred             CCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhc---CCCCCEEEecCC-CCCHHHHHH
Q 037671           57 SLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISR---ASSLQHLNIGGT-FITDESLYA  132 (187)
Q Consensus        57 ~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~---~~~L~~L~l~~~-~~~~~~~~~  132 (187)
                      .|++||+++    |.+++.|+..+   ..|++|++|++++|..+++.++..+...   +++|++|++++| .++|+++..
T Consensus        62 ~L~~LDLs~----~~Itd~GL~~L---~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~  134 (176)
T 3e4g_A           62 KIQAIDATD----SCIMSIGFDHM---EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIA  134 (176)
T ss_dssp             CEEEEEEES----CCCCGGGGGGG---TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHH
T ss_pred             eEeEEeCcC----CCccHHHHHHh---cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHH
Confidence            467777774    35777777665   2467777777777766777777766652   456777777774 477777766


Q ss_pred             HHhcCCccceeeccCCCCCcHHH--HHHHHhcCCCCc
Q 037671          133 IANSCPQLKSIVLWSCRQVTGNG--LLFLVNKCGRLE  167 (187)
Q Consensus       133 l~~~~~~L~~L~l~~~~~~~~~~--~~~l~~~~~~L~  167 (187)
                      ++. ||+|++|++++|..+++.+  +..+-+..|+++
T Consensus       135 L~~-~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~  170 (176)
T 3e4g_A          135 LHH-FRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLE  170 (176)
T ss_dssp             GGG-CTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCE
T ss_pred             Hhc-CCCCCEEECCCCCCCCchHHHHHHHHHHCCCcE
Confidence            653 6777777777777777665  334445566654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=99.63  E-value=7e-16  Score=105.42  Aligned_cols=93  Identities=14%  Similarity=0.179  Sum_probs=84.2

Q ss_pred             CCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCC-CCCHHHHHHHHhc---CCccceeeccCCCCCcHHHHHHHHh
Q 037671           86 ISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGT-FITDESLYAIANS---CPQLKSIVLWSCRQVTGNGLLFLVN  161 (187)
Q Consensus        86 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~---~~~L~~L~l~~~~~~~~~~~~~l~~  161 (187)
                      ..+|++|++++|. +++.++..+ ..|++|++|+|+++ .++|+++..++..   ++.|++|++++|..+||.|+..++ 
T Consensus        60 ~~~L~~LDLs~~~-Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~-  136 (176)
T 3e4g_A           60 KYKIQAIDATDSC-IMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH-  136 (176)
T ss_dssp             CCCEEEEEEESCC-CCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG-
T ss_pred             CceEeEEeCcCCC-ccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh-
Confidence            3579999999998 999999887 46999999999996 6999999999873   678999999999999999999987 


Q ss_pred             cCCCCcEEEeeCC-CCCHHHH
Q 037671          162 KCGRLESINVWGT-RLPLDCF  181 (187)
Q Consensus       162 ~~~~L~~L~l~~~-~i~~~~~  181 (187)
                      .+++|++|++++| .+|+.++
T Consensus       137 ~~~~L~~L~L~~c~~Itd~gl  157 (176)
T 3e4g_A          137 HFRNLKYLFLSDLPGVKEKEK  157 (176)
T ss_dssp             GCTTCCEEEEESCTTCCCHHH
T ss_pred             cCCCCCEEECCCCCCCCchHH
Confidence            5899999999999 7999874

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.62  E-value=1.3e-14  Score=109.26  Aligned_cols=144  Identities=19%  Similarity=0.286  Sum_probs=103.0

Q ss_pred             ceeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCC
Q 037671           34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRAS  113 (187)
Q Consensus        34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  113 (187)
                      +.+++.++.+++.....+. .+++|++|++++|.   .+++.++..+  ...+++|++|++++|..+++.++......++
T Consensus       121 ~~L~L~~~~l~~~~~~~l~-~~~~L~~L~L~~~~---~l~~~~l~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~  194 (336)
T 2ast_B          121 QNLSLEGLRLSDPIVNTLA-KNSNLVRLNLSGCS---GFSEFALQTL--LSSCSRLDELNLSWCFDFTEKHVQVAVAHVS  194 (336)
T ss_dssp             SEEECTTCBCCHHHHHHHT-TCTTCSEEECTTCB---SCCHHHHHHH--HHHCTTCCEEECCCCTTCCHHHHHHHHHHSC
T ss_pred             CEEeCcCcccCHHHHHHHh-cCCCCCEEECCCCC---CCCHHHHHHH--HhcCCCCCEEcCCCCCCcChHHHHHHHHhcc
Confidence            5677777777766555444 47888888888542   5666555443  2447888888888884488777777777788


Q ss_pred             -CCCEEEecCC--CCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCC-CCCHHHHHhh
Q 037671          114 -SLQHLNIGGT--FITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGT-RLPLDCFIGL  184 (187)
Q Consensus       114 -~L~~L~l~~~--~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~-~i~~~~~~~L  184 (187)
                       +|++|+++++  .+++..+......+|+|++|++++|..+++.++..+. .+++|++|++++| .++++++..+
T Consensus       195 ~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~l  268 (336)
T 2ast_B          195 ETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-QLNYLQHLSLSRCYDIIPETLLEL  268 (336)
T ss_dssp             TTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG-GCTTCCEEECTTCTTCCGGGGGGG
T ss_pred             cCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHh-CCCCCCEeeCCCCCCCCHHHHHHH
Confidence             8888888887  6787777777777888888888887557777666554 4688888888887 6777765443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.61  E-value=4.3e-14  Score=113.92  Aligned_cols=96  Identities=19%  Similarity=0.228  Sum_probs=56.6

Q ss_pred             CCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCC
Q 037671           86 ISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGR  165 (187)
Q Consensus        86 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~  165 (187)
                      +++|+.|++++  .+++.++..+...+++|+.|+++++.+++.++..++..||+|++|++++| .+++.++..++..+++
T Consensus       431 ~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n-~~~~~~~~~~~~~l~~  507 (594)
T 2p1m_B          431 CKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDC-PFGDKALLANASKLET  507 (594)
T ss_dssp             CTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESC-SCCHHHHHHTGGGGGG
T ss_pred             CCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCC-CCcHHHHHHHHHhCCC
Confidence            45555555543  25555555555555666666666666666666665555666666666665 3356665555555666


Q ss_pred             CcEEEeeCCCCCHHHHHhh
Q 037671          166 LESINVWGTRLPLDCFIGL  184 (187)
Q Consensus       166 L~~L~l~~~~i~~~~~~~L  184 (187)
                      |+.|++++|.++++++..+
T Consensus       508 L~~L~l~~~~~~~~~~~~l  526 (594)
T 2p1m_B          508 MRSLWMSSCSVSFGACKLL  526 (594)
T ss_dssp             SSEEEEESSCCBHHHHHHH
T ss_pred             CCEEeeeCCCCCHHHHHHH
Confidence            6666666666666665554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.57  E-value=4.6e-14  Score=108.08  Aligned_cols=144  Identities=15%  Similarity=0.201  Sum_probs=117.8

Q ss_pred             ceeeecccccCHHHHHHHHhc----CCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHH
Q 037671           34 KNLSFAGWKMDDDSTARLVGY----AYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLI  109 (187)
Q Consensus        34 ~~l~~~~~~l~~~~~~~~~~~----~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  109 (187)
                      +.+++.++.+++.....+...    .++|+.|++++|    .+++.++..++  ..+++|++|++++|. +++.++..+.
T Consensus        75 ~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n----~l~~~~~~~l~--~~L~~L~~L~Ls~n~-l~~~~~~~L~  147 (372)
T 3un9_A           75 RQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASC----QLDPAGLRTLL--PVFLRARKLGLQLNS-LGPEACKDLR  147 (372)
T ss_dssp             CEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTC----CCCHHHHHHTH--HHHHTEEEEECCSSC-CCHHHHHHHH
T ss_pred             CEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCC----CCCHHHHHHHH--HHHHhccHhhcCCCC-CCHHHHHHHH
Confidence            568889999988776665554    258999999976    78888887763  335789999999886 9998887765


Q ss_pred             h----cCCCCCEEEecCCCCCHHHHHHHH---hcCCccceeeccCCCCCcHHHHHHHHh---cCCCCcEEEeeCCCCCHH
Q 037671          110 S----RASSLQHLNIGGTFITDESLYAIA---NSCPQLKSIVLWSCRQVTGNGLLFLVN---KCGRLESINVWGTRLPLD  179 (187)
Q Consensus       110 ~----~~~~L~~L~l~~~~~~~~~~~~l~---~~~~~L~~L~l~~~~~~~~~~~~~l~~---~~~~L~~L~l~~~~i~~~  179 (187)
                      .    ..++|++|++++|.+++.++..++   ..++.|++|++++| .+++.++..++.   .+++|++|++++|.+++.
T Consensus       148 ~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~  226 (372)
T 3un9_A          148 DLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYNGAGDT  226 (372)
T ss_dssp             HHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHH
T ss_pred             HHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHH
Confidence            4    368999999999999998877765   45788999999985 799999877764   457999999999999999


Q ss_pred             HHHhhh
Q 037671          180 CFIGLL  185 (187)
Q Consensus       180 ~~~~L~  185 (187)
                      +...+.
T Consensus       227 g~~~l~  232 (372)
T 3un9_A          227 AALALA  232 (372)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            887664

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=99.56  E-value=1e-13  Score=96.29  Aligned_cols=131  Identities=18%  Similarity=0.179  Sum_probs=107.3

Q ss_pred             HHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhh-ccCCCccEEEecCCCCCCHHHHHHHHh---cCCCCCEEEe
Q 037671           45 DDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFA-KCISNLTSISLWGLTGITDKGVVQLIS---RASSLQHLNI  120 (187)
Q Consensus        45 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~~L~~L~l  120 (187)
                      ...+.......+.|++|++++|.   .+++.+...++.+ ..+++|++|+++++. +++.+...+..   ..++|++|++
T Consensus        25 ~~~l~~~l~~~~~L~~L~L~~n~---~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L  100 (185)
T 1io0_A           25 EETLKRIQNNDPDLEEVNLNNIM---NIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNV  100 (185)
T ss_dssp             HHHHHHHHTTCTTCCEEECTTCT---TCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEEC
T ss_pred             HHHHHHHHhcCCCCCEEEecCCC---CCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEEC
Confidence            34566777788999999998531   7899988887643 447899999999886 99988766554   5789999999


Q ss_pred             cCCCCCHHHHHHHHhc---CCccceeec--cCCCCCcHHHHHHHHhc---CCCCcEEEeeCCCCCHHH
Q 037671          121 GGTFITDESLYAIANS---CPQLKSIVL--WSCRQVTGNGLLFLVNK---CGRLESINVWGTRLPLDC  180 (187)
Q Consensus       121 ~~~~~~~~~~~~l~~~---~~~L~~L~l--~~~~~~~~~~~~~l~~~---~~~L~~L~l~~~~i~~~~  180 (187)
                      ++|.++++++..++..   .+.|++|++  ++ +.++++++..+++.   .++|++|++++|.+++++
T Consensus       101 ~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~-N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~~  167 (185)
T 1io0_A          101 ESNFISGSGILALVEALQSNTSLIELRIDNQS-QPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRL  167 (185)
T ss_dssp             CSSCCCHHHHHHHHHGGGGCSSCCEEECCCCS-SCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHHH
T ss_pred             cCCcCCHHHHHHHHHHHHhCCCceEEEecCCC-CCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChHH
Confidence            9999999998888755   467999999  66 59999997777654   589999999999999887

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.53  E-value=3.1e-13  Score=105.86  Aligned_cols=146  Identities=16%  Similarity=0.199  Sum_probs=103.1

Q ss_pred             ceeeecccccCHHHH---HHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhh--ccCCCccEEEecCCCCCCHHHH---
Q 037671           34 KNLSFAGWKMDDDST---ARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFA--KCISNLTSISLWGLTGITDKGV---  105 (187)
Q Consensus        34 ~~l~~~~~~l~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~---  105 (187)
                      +.+++.++.+++...   ......+++|++|++++|    .+++.+...++..  ...++|++|++++|. ++..+.   
T Consensus       259 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n----~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l  333 (461)
T 1z7x_W          259 RTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN----ELGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCSHF  333 (461)
T ss_dssp             CEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTC----CCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHH
T ss_pred             eEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCC----CCchHHHHHHHHHhccCCccceeeEcCCCC-CchHHHHHH
Confidence            455666666666543   333344677777777754    5666666555321  223578888888776 766654   


Q ss_pred             HHHHhcCCCCCEEEecCCCCCHHHHHHHHhc----CCccceeeccCCCCCcHHHHHHHHh---cCCCCcEEEeeCCCCCH
Q 037671          106 VQLISRASSLQHLNIGGTFITDESLYAIANS----CPQLKSIVLWSCRQVTGNGLLFLVN---KCGRLESINVWGTRLPL  178 (187)
Q Consensus       106 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~----~~~L~~L~l~~~~~~~~~~~~~l~~---~~~~L~~L~l~~~~i~~  178 (187)
                      ......+++|+.|+++++.+++.+...++..    ++.|++|++++| .+++.++..++.   .+++|++|++++|.+++
T Consensus       334 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~  412 (461)
T 1z7x_W          334 SSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNNCLGD  412 (461)
T ss_dssp             HHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred             HHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence            3344467999999999999998887777653    568999999986 888877666653   47999999999999999


Q ss_pred             HHHHhhh
Q 037671          179 DCFIGLL  185 (187)
Q Consensus       179 ~~~~~L~  185 (187)
                      +++..+.
T Consensus       413 ~~~~~l~  419 (461)
T 1z7x_W          413 AGILQLV  419 (461)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9877664

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.53  E-value=3.4e-13  Score=103.62  Aligned_cols=13  Identities=23%  Similarity=0.314  Sum_probs=5.0

Q ss_pred             CCCcEEEeeCCCC
Q 037671          164 GRLESINVWGTRL  176 (187)
Q Consensus       164 ~~L~~L~l~~~~i  176 (187)
                      |+|+.|++++|.+
T Consensus       303 ~~L~~L~l~~N~l  315 (386)
T 2ca6_A          303 PDLLFLELNGNRF  315 (386)
T ss_dssp             TTCCEEECTTSBS
T ss_pred             CCceEEEccCCcC
Confidence            3333333333333

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.49  E-value=9.3e-13  Score=101.14  Aligned_cols=141  Identities=13%  Similarity=0.102  Sum_probs=60.4

Q ss_pred             ceeeecccccCHHH---HHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhh-ccC---------CCccEEEecCCCCC
Q 037671           34 KNLSFAGWKMDDDS---TARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFA-KCI---------SNLTSISLWGLTGI  100 (187)
Q Consensus        34 ~~l~~~~~~l~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~-~~~---------~~L~~L~l~~~~~~  100 (187)
                      +.+++.++.++..+   +...+..+++|++|++++|    .+++.+...++.. ..+         ++|++|+++++. +
T Consensus        97 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n----~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~-l  171 (386)
T 2ca6_A           97 HTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNN----GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-L  171 (386)
T ss_dssp             CEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSS----CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC-C
T ss_pred             cEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCC----CCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC-C
Confidence            34555555554432   2233344556666666544    3443333332110 111         445555555443 4


Q ss_pred             CHHHHHH---HHhcCCCCCEEEecCCCCCHHHHHHHHh----cCCccceeeccCCCCCcHHHHHHHH---hcCCCCcEEE
Q 037671          101 TDKGVVQ---LISRASSLQHLNIGGTFITDESLYAIAN----SCPQLKSIVLWSCRQVTGNGLLFLV---NKCGRLESIN  170 (187)
Q Consensus       101 ~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~l~~----~~~~L~~L~l~~~~~~~~~~~~~l~---~~~~~L~~L~  170 (187)
                      +..++..   ....+++|++|++++|.+++.++..+..    .+++|++|++++| .+++.++..++   ..+++|++|+
T Consensus       172 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n-~l~~~g~~~l~~~l~~~~~L~~L~  250 (386)
T 2ca6_A          172 ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAIALKSWPNLRELG  250 (386)
T ss_dssp             TGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred             CcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCC-CCCcHHHHHHHHHHccCCCcCEEE
Confidence            4333332   2223445555555555555444333322    3444555555442 34443333332   2234444444


Q ss_pred             eeCCCCCHHH
Q 037671          171 VWGTRLPLDC  180 (187)
Q Consensus       171 l~~~~i~~~~  180 (187)
                      +++|.+++.+
T Consensus       251 L~~n~i~~~~  260 (386)
T 2ca6_A          251 LNDCLLSARG  260 (386)
T ss_dssp             CTTCCCCHHH
T ss_pred             CCCCCCchhh
Confidence            4444444443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.48  E-value=8.7e-13  Score=103.29  Aligned_cols=144  Identities=14%  Similarity=0.194  Sum_probs=109.2

Q ss_pred             ceeeecccccCHHHH---HHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCC----CccEEEecCCCCCCHHHHH
Q 037671           34 KNLSFAGWKMDDDST---ARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCIS----NLTSISLWGLTGITDKGVV  106 (187)
Q Consensus        34 ~~l~~~~~~l~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~----~L~~L~l~~~~~~~~~~~~  106 (187)
                      +.+++.++.+++...   ......+++|++|++++|    .+++.+...+..  .++    +|++|++++|. +++.++.
T Consensus        31 ~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n----~l~~~~~~~l~~--~l~~~~~~L~~L~L~~n~-i~~~~~~  103 (461)
T 1z7x_W           31 QVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN----ELGDVGVHCVLQ--GLQTPSCKIQKLSLQNCC-LTGAGCG  103 (461)
T ss_dssp             SEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTC----CCHHHHHHHHHH--TTCSTTCCCCEEECTTSC-CBGGGHH
T ss_pred             cEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCC----cCChHHHHHHHH--HHhhCCCceeEEEccCCC-CCHHHHH
Confidence            567888888887643   445566799999999865    677777766532  233    79999999886 8876544


Q ss_pred             ---HHHhcCCCCCEEEecCCCCCHHHHHHHHhc----CCccceeeccCCCCCcHHHHHHHH---hcCCCCcEEEeeCCCC
Q 037671          107 ---QLISRASSLQHLNIGGTFITDESLYAIANS----CPQLKSIVLWSCRQVTGNGLLFLV---NKCGRLESINVWGTRL  176 (187)
Q Consensus       107 ---~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~----~~~L~~L~l~~~~~~~~~~~~~l~---~~~~~L~~L~l~~~~i  176 (187)
                         .....+++|++|+++++.+++.++..++..    .++|++|++++| .+++.++..++   ..+++|++|++++|.+
T Consensus       104 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i  182 (461)
T 1z7x_W          104 VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASCEPLASVLRAKPDFKELTVSNNDI  182 (461)
T ss_dssp             HHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred             HHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCC-CCCHHHHHHHHHHHhhCCCCCEEECcCCCc
Confidence               344568899999999999998888777654    456999999986 78877755544   4579999999999999


Q ss_pred             CHHHHHhhh
Q 037671          177 PLDCFIGLL  185 (187)
Q Consensus       177 ~~~~~~~L~  185 (187)
                      ++.+...+.
T Consensus       183 ~~~~~~~l~  191 (461)
T 1z7x_W          183 NEAGVRVLC  191 (461)
T ss_dssp             HHHHHHHHH
T ss_pred             chHHHHHHH
Confidence            988876653

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=99.36  E-value=1.2e-11  Score=85.78  Aligned_cols=101  Identities=20%  Similarity=0.227  Sum_probs=85.9

Q ss_pred             ccCCCccEEEecCCCCCCHHHHHHHHh---cCCCCCEEEecCCCCCHHHHHHHHhc---CCccceeeccCCCCCcHHHHH
Q 037671           84 KCISNLTSISLWGLTGITDKGVVQLIS---RASSLQHLNIGGTFITDESLYAIANS---CPQLKSIVLWSCRQVTGNGLL  157 (187)
Q Consensus        84 ~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~l~~~---~~~L~~L~l~~~~~~~~~~~~  157 (187)
                      ..++.|++|+++++..+++.++..+..   ..++|++|+|+++.++++++..++..   .+.|++|++++| .+++.|+.
T Consensus        33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~g~~  111 (185)
T 1io0_A           33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FISGSGIL  111 (185)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHHHH
T ss_pred             hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC-cCCHHHHH
Confidence            457899999999883499988877665   47899999999999999998777654   478999999984 99999998


Q ss_pred             HHHhc---CCCCcEEEe--eCCCCCHHHHHhhh
Q 037671          158 FLVNK---CGRLESINV--WGTRLPLDCFIGLL  185 (187)
Q Consensus       158 ~l~~~---~~~L~~L~l--~~~~i~~~~~~~L~  185 (187)
                      .+++.   .++|++|++  ++|.++++|...|.
T Consensus       112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~  144 (185)
T 1io0_A          112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIA  144 (185)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHH
T ss_pred             HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHH
Confidence            88765   478999999  89999999987765

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.34  E-value=2.8e-12  Score=97.76  Aligned_cols=93  Identities=18%  Similarity=0.164  Sum_probs=44.8

Q ss_pred             CCccEEEecCCCCCCHHHHHHHH---hcCC-CCCEEEecCCCCCHHHHHHH---HhcC-CccceeeccCCCCCcHHHHHH
Q 037671           87 SNLTSISLWGLTGITDKGVVQLI---SRAS-SLQHLNIGGTFITDESLYAI---ANSC-PQLKSIVLWSCRQVTGNGLLF  158 (187)
Q Consensus        87 ~~L~~L~l~~~~~~~~~~~~~~~---~~~~-~L~~L~l~~~~~~~~~~~~l---~~~~-~~L~~L~l~~~~~~~~~~~~~  158 (187)
                      ++|++|+++++. +++.+...+.   ...+ +|++|++++|.+++.+...+   ...+ +.|++|++++| .+++.++..
T Consensus       138 ~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~i~~~~~~~  215 (362)
T 3goz_A          138 ASITSLNLRGND-LGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSAN-LLGLKSYAE  215 (362)
T ss_dssp             TTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHH
T ss_pred             CceeEEEccCCc-CCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCC-CCChhHHHH
Confidence            455566665553 4443333222   2233 56666666655543332222   2223 35666666653 555554443


Q ss_pred             HHhc----CCCCcEEEeeCCCCCHHHH
Q 037671          159 LVNK----CGRLESINVWGTRLPLDCF  181 (187)
Q Consensus       159 l~~~----~~~L~~L~l~~~~i~~~~~  181 (187)
                      ++..    .++|++|++++|.+++.+.
T Consensus       216 l~~~l~~~~~~L~~L~Ls~N~l~~~~~  242 (362)
T 3goz_A          216 LAYIFSSIPNHVVSLNLCLNCLHGPSL  242 (362)
T ss_dssp             HHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred             HHHHHhcCCCCceEEECcCCCCCcHHH
Confidence            3321    2466666666666655444

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=99.29  E-value=7.1e-11  Score=82.07  Aligned_cols=131  Identities=18%  Similarity=0.161  Sum_probs=103.3

Q ss_pred             HHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhh-ccCCCccEEEecCCCCCCHHHHHHHH---hcCCCCCEEEe
Q 037671           45 DDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFA-KCISNLTSISLWGLTGITDKGVVQLI---SRASSLQHLNI  120 (187)
Q Consensus        45 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~L~~L~l  120 (187)
                      +..+..+...-+.|++|+++++   ..+.+.+.+.++.+ .....|+.|+|+++. +++.+...++   +..+.|++|+|
T Consensus        30 ~~~l~~ll~~n~~L~~L~L~~n---n~igd~ga~~la~aL~~N~~L~~L~L~~n~-igd~ga~alA~aL~~N~tL~~L~L  105 (197)
T 1pgv_A           30 ESCINRLREDDTDLKEVNINNM---KRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNV  105 (197)
T ss_dssp             HHHHHHHHTTCSSCCEEECTTC---CSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEEC
T ss_pred             HHHHHHHHhcCCCccEEECCCC---CCCCHHHHHHHHHHHhhCCCcCEEEccCCC-CChHHHHHHHHHHhcCCccCeEec
Confidence            3456777777889999999853   27899998888654 446789999999886 9988775444   46789999999


Q ss_pred             cCCCCCHHHHHHHHhcCC---ccceeeccCC-C-CCcHHHHHHHHh---cCCCCcEEEeeCCCCCHH
Q 037671          121 GGTFITDESLYAIANSCP---QLKSIVLWSC-R-QVTGNGLLFLVN---KCGRLESINVWGTRLPLD  179 (187)
Q Consensus       121 ~~~~~~~~~~~~l~~~~~---~L~~L~l~~~-~-~~~~~~~~~l~~---~~~~L~~L~l~~~~i~~~  179 (187)
                      +.|.++++++..++..+.   .|++|+++++ + .+++.+...+++   .-++|+.|+++.+.+...
T Consensus       106 ~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g~~  172 (197)
T 1pgv_A          106 ESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASMEAR  172 (197)
T ss_dssp             CSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHHHH
T ss_pred             CCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCccHH
Confidence            999999999999987764   4999999864 3 678888666664   458999999998765543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.26  E-value=3.2e-11  Score=91.91  Aligned_cols=137  Identities=18%  Similarity=0.116  Sum_probs=96.3

Q ss_pred             HHHHHhcCCCCcEEEeeecc-----------------CCcccchhhhhhhhhhccCCCccEEEecCCC-----CCCHHHH
Q 037671           48 TARLVGYAYSLKELEISRSR-----------------WGCQITDNGLYRMSFAKCISNLTSISLWGLT-----GITDKGV  105 (187)
Q Consensus        48 ~~~~~~~~~~L~~L~l~~~~-----------------~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~-----~~~~~~~  105 (187)
                      +..+...+|+|++|.++++.                 ..+.+++.++..++. ..+|+|++|+|+.+.     ......+
T Consensus       164 L~~ll~~~P~L~~L~L~g~~~l~l~~~~~~~L~~L~L~~~~l~~~~l~~l~~-~~lp~L~~L~L~~~~~~~~~~~~~~~l  242 (362)
T 2ra8_A          164 LSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILG-SDLPNLEKLVLYVGVEDYGFDGDMNVF  242 (362)
T ss_dssp             CHHHHHTCTTCCEEEEECCBTCBCCSCBCTTCSEEEEECSBCCHHHHHHHHH-SBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred             HHHHHhcCCCCcEEEEeCCCCceeccccCCCCcEEEEecCCCChHHHHHHHH-ccCCCCcEEEEeccccccccchhHHHH
Confidence            44566667777777776541                 012455555555532 247899999885321     0112222


Q ss_pred             HHHHh--cCCCCCEEEecCCCCCHHHHHHHHh--cCCccceeeccCCCCCcHHHHHHHHhc---CCCCcEEEeeCCCCCH
Q 037671          106 VQLIS--RASSLQHLNIGGTFITDESLYAIAN--SCPQLKSIVLWSCRQVTGNGLLFLVNK---CGRLESINVWGTRLPL  178 (187)
Q Consensus       106 ~~~~~--~~~~L~~L~l~~~~~~~~~~~~l~~--~~~~L~~L~l~~~~~~~~~~~~~l~~~---~~~L~~L~l~~~~i~~  178 (187)
                      ..+..  .+|+|+.|++.++.+++++...++.  .+|.|++|+++. +.+++.|...++..   +++|+.|++++|.+++
T Consensus       243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d  321 (362)
T 2ra8_A          243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD  321 (362)
T ss_dssp             GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred             HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence            22222  4789999999999999887767764  578999999987 58999998888754   6899999999999999


Q ss_pred             HHHHhhhc
Q 037671          179 DCFIGLLT  186 (187)
Q Consensus       179 ~~~~~L~~  186 (187)
                      +++..|..
T Consensus       322 ~~~~~l~~  329 (362)
T 2ra8_A          322 EMKKELQK  329 (362)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988764

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.25  E-value=1.5e-11  Score=93.76  Aligned_cols=145  Identities=16%  Similarity=0.121  Sum_probs=104.5

Q ss_pred             ceeeecccccCHHHH---HHHHhcCC-CCcEEEeeeccCCcccchhhhhhhhhh--ccCCCccEEEecCCCCCCHHHHH-
Q 037671           34 KNLSFAGWKMDDDST---ARLVGYAY-SLKELEISRSRWGCQITDNGLYRMSFA--KCISNLTSISLWGLTGITDKGVV-  106 (187)
Q Consensus        34 ~~l~~~~~~l~~~~~---~~~~~~~~-~L~~L~l~~~~~~~~~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~-  106 (187)
                      +.+++.++.+++...   ...+..++ +|++|++++|    .+++.+...++..  ..+++|++|+++++. ++..+.. 
T Consensus        25 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N----~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~   99 (362)
T 3goz_A           25 TSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN----SLGFKNSDELVQILAAIPANVTSLNLSGNF-LSYKSSDE   99 (362)
T ss_dssp             CEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSS----CGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHH
T ss_pred             eEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCC----CCCHHHHHHHHHHHhccCCCccEEECcCCc-CChHHHHH
Confidence            567888887765443   34445667 8999999976    7777766655321  224899999999886 6654444 


Q ss_pred             --HHHhcC-CCCCEEEecCCCCCHHHHHHHHhc----CCccceeeccCCCCCcHHHHHHHHhc---CC-CCcEEEeeCCC
Q 037671          107 --QLISRA-SSLQHLNIGGTFITDESLYAIANS----CPQLKSIVLWSCRQVTGNGLLFLVNK---CG-RLESINVWGTR  175 (187)
Q Consensus       107 --~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~----~~~L~~L~l~~~~~~~~~~~~~l~~~---~~-~L~~L~l~~~~  175 (187)
                        .....+ ++|+.|++++|.+++.+...++..    ++.|++|++++| .+++.++..+++.   .+ +|++|++++|.
T Consensus       100 l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~  178 (362)
T 3goz_A          100 LVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKSSDELIQILAAIPANVNSLNLRGNN  178 (362)
T ss_dssp             HHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred             HHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCC-cCCHHHHHHHHHHHhcCCccccEeeecCCC
Confidence              334445 899999999988887666555443    468999999985 8888777666543   44 89999999999


Q ss_pred             CCHHHHHhh
Q 037671          176 LPLDCFIGL  184 (187)
Q Consensus       176 i~~~~~~~L  184 (187)
                      +++.+...+
T Consensus       179 l~~~~~~~l  187 (362)
T 3goz_A          179 LASKNCAEL  187 (362)
T ss_dssp             GGGSCHHHH
T ss_pred             CchhhHHHH
Confidence            987765444

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.13  E-value=2.9e-11  Score=80.62  Aligned_cols=127  Identities=20%  Similarity=0.228  Sum_probs=71.1

Q ss_pred             ceeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCC
Q 037671           34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRAS  113 (187)
Q Consensus        34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  113 (187)
                      +.+++.++.+++..+......+++|+.|++++|    .+++.  ..+   ..+++|+.|+++++. ++.. +......++
T Consensus        20 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n----~l~~~--~~~---~~l~~L~~L~Ls~n~-i~~~-~~~~~~~l~   88 (149)
T 2je0_A           20 KELVLDNSRSNEGKLEGLTDEFEELEFLSTINV----GLTSI--ANL---PKLNKLKKLELSDNR-VSGG-LEVLAEKCP   88 (149)
T ss_dssp             SEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS----CCCCC--TTC---CCCTTCCEEECCSSC-CCSC-THHHHHHCT
T ss_pred             eEEEccCCcCChhHHHHHHhhcCCCcEEECcCC----CCCCc--hhh---hcCCCCCEEECCCCc-ccch-HHHHhhhCC
Confidence            456666665553333334455677777777754    33333  222   335677777777664 4432 333444577


Q ss_pred             CCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHH--HHHHhcCCCCcEEEee
Q 037671          114 SLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGL--LFLVNKCGRLESINVW  172 (187)
Q Consensus       114 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~--~~l~~~~~~L~~L~l~  172 (187)
                      +|+.|++++|.+++-........+++|++|++++| .+++...  ......+|+|+.|+++
T Consensus        89 ~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           89 NLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             TCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence            77777777776665322222345677777777764 4444332  1334557777777665

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.12  E-value=1.4e-10  Score=81.05  Aligned_cols=127  Identities=24%  Similarity=0.271  Sum_probs=76.1

Q ss_pred             ceeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCC
Q 037671           34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRAS  113 (187)
Q Consensus        34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  113 (187)
                      +.+++.++.+++-  . -...+++|+.|++++|    .+++-.  .+   ..+++|++|+++++. ++......+ ..++
T Consensus        47 ~~L~l~~n~i~~l--~-~l~~l~~L~~L~l~~n----~~~~~~--~l---~~l~~L~~L~l~~n~-l~~~~~~~l-~~l~  112 (197)
T 4ezg_A           47 TYITLANINVTDL--T-GIEYAHNIKDLTINNI----HATNYN--PI---SGLSNLERLRIMGKD-VTSDKIPNL-SGLT  112 (197)
T ss_dssp             CEEEEESSCCSCC--T-TGGGCTTCSEEEEESC----CCSCCG--GG---TTCTTCCEEEEECTT-CBGGGSCCC-TTCT
T ss_pred             cEEeccCCCccCh--H-HHhcCCCCCEEEccCC----CCCcch--hh---hcCCCCCEEEeECCc-cCcccChhh-cCCC
Confidence            4567777666532  2 2556788888888865    332221  22   236777777777664 554333332 2467


Q ss_pred             CCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCCH
Q 037671          114 SLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPL  178 (187)
Q Consensus       114 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~  178 (187)
                      +|+.|+++++.+++.....+. .+++|++|++++|..+++..   ....+++|++|++++|.+++
T Consensus       113 ~L~~L~Ls~n~i~~~~~~~l~-~l~~L~~L~L~~n~~i~~~~---~l~~l~~L~~L~l~~n~i~~  173 (197)
T 4ezg_A          113 SLTLLDISHSAHDDSILTKIN-TLPKVNSIDLSYNGAITDIM---PLKTLPELKSLNIQFDGVHD  173 (197)
T ss_dssp             TCCEEECCSSBCBGGGHHHHT-TCSSCCEEECCSCTBCCCCG---GGGGCSSCCEEECTTBCCCC
T ss_pred             CCCEEEecCCccCcHhHHHHh-hCCCCCEEEccCCCCccccH---hhcCCCCCCEEECCCCCCcC
Confidence            777777777777665444443 46777777777754344432   13456777777777776654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.10  E-value=9.5e-11  Score=81.83  Aligned_cols=126  Identities=14%  Similarity=0.171  Sum_probs=84.6

Q ss_pred             ceeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCC
Q 037671           34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRAS  113 (187)
Q Consensus        34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  113 (187)
                      +.+++.++.++...   ....+++|+.|++++|    .+++.....+   ..+++|+.|+++++. ++......+. .++
T Consensus        69 ~~L~l~~n~~~~~~---~l~~l~~L~~L~l~~n----~l~~~~~~~l---~~l~~L~~L~Ls~n~-i~~~~~~~l~-~l~  136 (197)
T 4ezg_A           69 KDLTINNIHATNYN---PISGLSNLERLRIMGK----DVTSDKIPNL---SGLTSLTLLDISHSA-HDDSILTKIN-TLP  136 (197)
T ss_dssp             SEEEEESCCCSCCG---GGTTCTTCCEEEEECT----TCBGGGSCCC---TTCTTCCEEECCSSB-CBGGGHHHHT-TCS
T ss_pred             CEEEccCCCCCcch---hhhcCCCCCEEEeECC----ccCcccChhh---cCCCCCCEEEecCCc-cCcHhHHHHh-hCC
Confidence            45666666554321   3456788999999875    5665555444   347889999998875 7765555444 588


Q ss_pred             CCCEEEecCCC-CCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCCH
Q 037671          114 SLQHLNIGGTF-ITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPL  178 (187)
Q Consensus       114 ~L~~L~l~~~~-~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~  178 (187)
                      +|+.|++++|. +++-  . ....+++|++|++++| .+++..   ....+++|+.|++++|++++
T Consensus       137 ~L~~L~L~~n~~i~~~--~-~l~~l~~L~~L~l~~n-~i~~~~---~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          137 KVNSIDLSYNGAITDI--M-PLKTLPELKSLNIQFD-GVHDYR---GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             SCCEEECCSCTBCCCC--G-GGGGCSSCCEEECTTB-CCCCCT---TGGGCSSCCEEEECBC----
T ss_pred             CCCEEEccCCCCcccc--H-hhcCCCCCCEEECCCC-CCcChH---HhccCCCCCEEEeeCcccCC
Confidence            99999999976 6653  1 2456888999999885 565533   23568899999999988764

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.10  E-value=9.6e-12  Score=84.68  Aligned_cols=132  Identities=19%  Similarity=0.208  Sum_probs=91.5

Q ss_pred             ceeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCC
Q 037671           34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRAS  113 (187)
Q Consensus        34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  113 (187)
                      +.+++.++.+++..+...+..+++|+.|++++|    .++..  ..+   ..+++|+.|+++++. ++.. +......++
T Consensus        27 ~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n----~l~~~--~~~---~~l~~L~~L~Ls~N~-l~~~-~~~~~~~l~   95 (168)
T 2ell_A           27 RELVLDNCKSNDGKIEGLTAEFVNLEFLSLINV----GLISV--SNL---PKLPKLKKLELSENR-IFGG-LDMLAEKLP   95 (168)
T ss_dssp             SEEECCSCBCBTTBCSSCCGGGGGCCEEEEESS----CCCCC--SSC---CCCSSCCEEEEESCC-CCSC-CCHHHHHCT
T ss_pred             CEEECCCCCCChhhHHHHHHhCCCCCEEeCcCC----CCCCh--hhh---ccCCCCCEEECcCCc-CchH-HHHHHhhCC
Confidence            567777777764344444567789999999976    44443  222   347899999999886 5543 334455689


Q ss_pred             CCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHH--HHHHhcCCCCcEEEeeCCCCC
Q 037671          114 SLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGL--LFLVNKCGRLESINVWGTRLP  177 (187)
Q Consensus       114 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~--~~l~~~~~~L~~L~l~~~~i~  177 (187)
                      +|+.|++++|.+++-........+++|+.|++++| .++....  ......+|+|+.|++++|.+.
T Consensus        96 ~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A           96 NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             TCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             CCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            99999999988876321122345889999999985 5554432  235567999999999998654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.09  E-value=3.2e-09  Score=80.89  Aligned_cols=137  Identities=15%  Similarity=0.096  Sum_probs=99.8

Q ss_pred             ceeeecccccCHHHHHHHHh-cCCCCcEEEeeeccCCcccchhhhhhhh---hhccCCCccEEEecCCCCCCHHHHHHHH
Q 037671           34 KNLSFAGWKMDDDSTARLVG-YAYSLKELEISRSRWGCQITDNGLYRMS---FAKCISNLTSISLWGLTGITDKGVVQLI  109 (187)
Q Consensus        34 ~~l~~~~~~l~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~l~~l~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~  109 (187)
                      +.|.+..+.+++..+..+.. .+|+|++|+|+.+.+ ....+.++..++   .+..+|+|+.|.+..|. +++.+...+.
T Consensus       196 ~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~-~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~-i~~~~~~~la  273 (362)
T 2ra8_A          196 KSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVE-DYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE-EQNVVVEMFL  273 (362)
T ss_dssp             SEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCG-GGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT-THHHHHHHHH
T ss_pred             cEEEEecCCCChHHHHHHHHccCCCCcEEEEecccc-ccccchhHHHHHHHHhcCCCCCcCEEeCCCCC-CchHHHHHHH
Confidence            34555566778887777764 689999999974210 011222222221   12358999999998886 7776666665


Q ss_pred             h--cCCCCCEEEecCCCCCHHHHHHHHh---cCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCC
Q 037671          110 S--RASSLQHLNIGGTFITDESLYAIAN---SCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTR  175 (187)
Q Consensus       110 ~--~~~~L~~L~l~~~~~~~~~~~~l~~---~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~  175 (187)
                      .  .+++|++|+++.+.+++.+...+..   .+++|+.|++++| .+++.++..+.+.+  ..++++++++
T Consensus       274 ~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n-~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          274 ESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN-YLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             HCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB-BCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             hCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC-cCCHHHHHHHHHHc--CCEEEecCCc
Confidence            4  5789999999999999999888764   4789999999985 89999999998755  4568888775

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=99.04  E-value=1.8e-09  Score=74.99  Aligned_cols=101  Identities=13%  Similarity=0.201  Sum_probs=83.5

Q ss_pred             ccCCCccEEEecCCCCCCHHHHHHHHh---cCCCCCEEEecCCCCCHHHHHHHHhc---CCccceeeccCCCCCcHHHHH
Q 037671           84 KCISNLTSISLWGLTGITDKGVVQLIS---RASSLQHLNIGGTFITDESLYAIANS---CPQLKSIVLWSCRQVTGNGLL  157 (187)
Q Consensus        84 ~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~l~~~---~~~L~~L~l~~~~~~~~~~~~  157 (187)
                      ...+.|++|+++.+..+++.+...++.   ....|+.|+|+++.++|++...++..   -+.|++|+|++ +.+++.|+.
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~-N~Ig~~Ga~  116 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVES-NFLTPELLA  116 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCS-SBCCHHHHH
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCC-CcCCHHHHH
Confidence            446789999998764599988776665   46789999999999999998877754   46699999988 699999999


Q ss_pred             HHHhcC---CCCcEEEeeCC---CCCHHHHHhhh
Q 037671          158 FLVNKC---GRLESINVWGT---RLPLDCFIGLL  185 (187)
Q Consensus       158 ~l~~~~---~~L~~L~l~~~---~i~~~~~~~L~  185 (187)
                      .+++.+   +.|++|+|+++   .+++++..+++
T Consensus       117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia  150 (197)
T 1pgv_A          117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMM  150 (197)
T ss_dssp             HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHH
T ss_pred             HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHH
Confidence            999876   57999999865   77998877665

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.03  E-value=2.1e-10  Score=76.40  Aligned_cols=112  Identities=17%  Similarity=0.288  Sum_probs=81.0

Q ss_pred             CCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHH
Q 037671           55 AYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIA  134 (187)
Q Consensus        55 ~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~  134 (187)
                      .++++.|++++|    .+++..+...  ...+++|+.|+++++. ++..   .....+++|+.|+++++.++.. +....
T Consensus        16 ~~~l~~L~l~~n----~l~~~~~~~~--~~~l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~Ls~n~i~~~-~~~~~   84 (149)
T 2je0_A           16 PSDVKELVLDNS----RSNEGKLEGL--TDEFEELEFLSTINVG-LTSI---ANLPKLNKLKKLELSDNRVSGG-LEVLA   84 (149)
T ss_dssp             GGGCSEEECTTC----BCBTTBCCSC--CTTCTTCCEEECTTSC-CCCC---TTCCCCTTCCEEECCSSCCCSC-THHHH
T ss_pred             CccCeEEEccCC----cCChhHHHHH--HhhcCCCcEEECcCCC-CCCc---hhhhcCCCCCEEECCCCcccch-HHHHh
Confidence            467999999976    5553222221  1447999999999885 6554   3345689999999999888763 33444


Q ss_pred             hcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCCH
Q 037671          135 NSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPL  178 (187)
Q Consensus       135 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~  178 (187)
                      ..+++|++|++++| .+++.........+++|++|++++|.+++
T Consensus        85 ~~l~~L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N~l~~  127 (149)
T 2je0_A           85 EKCPNLTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNCEVTN  127 (149)
T ss_dssp             HHCTTCCEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTCGGGG
T ss_pred             hhCCCCCEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCCcccc
Confidence            56899999999985 67664332334679999999999997764

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.95  E-value=1.2e-09  Score=81.55  Aligned_cols=14  Identities=14%  Similarity=0.131  Sum_probs=8.4

Q ss_pred             hcCCCCcEEEeeec
Q 037671           53 GYAYSLKELEISRS   66 (187)
Q Consensus        53 ~~~~~L~~L~l~~~   66 (187)
                      ..+++|+.|++++|
T Consensus       118 ~~l~~L~~L~Ls~N  131 (312)
T 1wwl_A          118 ATGPDLNILNLRNV  131 (312)
T ss_dssp             CCSCCCSEEEEESC
T ss_pred             hcCCCccEEEccCC
Confidence            34566666666655

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.90  E-value=3.1e-10  Score=77.09  Aligned_cols=112  Identities=17%  Similarity=0.234  Sum_probs=79.5

Q ss_pred             CCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHH
Q 037671           55 AYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIA  134 (187)
Q Consensus        55 ~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~  134 (187)
                      .+.++.|++++|    .+++..+...  ...+++|+.|+++++. ++..   .....+++|+.|++++|.++.. +....
T Consensus        23 ~~~L~~L~l~~n----~l~~~~i~~~--~~~l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~Ls~N~l~~~-~~~~~   91 (168)
T 2ell_A           23 PAAVRELVLDNC----KSNDGKIEGL--TAEFVNLEFLSLINVG-LISV---SNLPKLPKLKKLELSENRIFGG-LDMLA   91 (168)
T ss_dssp             TTSCSEEECCSC----BCBTTBCSSC--CGGGGGCCEEEEESSC-CCCC---SSCCCCSSCCEEEEESCCCCSC-CCHHH
T ss_pred             cccCCEEECCCC----CCChhhHHHH--HHhCCCCCEEeCcCCC-CCCh---hhhccCCCCCEEECcCCcCchH-HHHHH
Confidence            477999999976    5553222221  1346899999999886 6554   3344689999999999887753 33445


Q ss_pred             hcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCCH
Q 037671          135 NSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPL  178 (187)
Q Consensus       135 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~  178 (187)
                      ..+++|+.|++++| .+++.........+++|+.|++++|.++.
T Consensus        92 ~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~~  134 (168)
T 2ell_A           92 EKLPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCEVTN  134 (168)
T ss_dssp             HHCTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSGGGT
T ss_pred             hhCCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCcCcc
Confidence            56999999999996 66653221223568999999999997754

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.88  E-value=4.8e-09  Score=79.11  Aligned_cols=123  Identities=21%  Similarity=0.241  Sum_probs=67.5

Q ss_pred             eeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCC
Q 037671           35 NLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASS  114 (187)
Q Consensus        35 ~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  114 (187)
                      .+.+.++.+.....   ...+++|+.|++++|    .+++...  +   ..+++|+.|+++++. ++..   .....+++
T Consensus       203 ~L~l~~n~l~~~~~---~~~~~~L~~L~l~~n----~l~~~~~--~---~~l~~L~~L~l~~n~-l~~~---~~~~~l~~  266 (347)
T 4fmz_A          203 YFTAYVNQITDITP---VANMTRLNSLKIGNN----KITDLSP--L---ANLSQLTWLEIGTNQ-ISDI---NAVKDLTK  266 (347)
T ss_dssp             EEECCSSCCCCCGG---GGGCTTCCEEECCSS----CCCCCGG--G---TTCTTCCEEECCSSC-CCCC---GGGTTCTT
T ss_pred             eeecccCCCCCCch---hhcCCcCCEEEccCC----ccCCCcc--h---hcCCCCCEEECCCCc-cCCC---hhHhcCCC
Confidence            44555554443221   456677777777755    3333221  1   235667777776664 4332   12334667


Q ss_pred             CCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCCH
Q 037671          115 LQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPL  178 (187)
Q Consensus       115 L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~  178 (187)
                      |+.|+++++.+++-   .....++.|++|++++| .+++.....+. .+++|+.|++++|.+++
T Consensus       267 L~~L~l~~n~l~~~---~~~~~l~~L~~L~L~~n-~l~~~~~~~l~-~l~~L~~L~L~~n~l~~  325 (347)
T 4fmz_A          267 LKMLNVGSNQISDI---SVLNNLSQLNSLFLNNN-QLGNEDMEVIG-GLTNLTTLFLSQNHITD  325 (347)
T ss_dssp             CCEEECCSSCCCCC---GGGGGCTTCSEEECCSS-CCCGGGHHHHH-TCTTCSEEECCSSSCCC
T ss_pred             cCEEEccCCccCCC---hhhcCCCCCCEEECcCC-cCCCcChhHhh-ccccCCEEEccCCcccc
Confidence            77777777655542   12344666777777664 55555444443 46677777777776543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.84  E-value=2.9e-09  Score=79.31  Aligned_cols=13  Identities=15%  Similarity=0.266  Sum_probs=6.5

Q ss_pred             cCCCCcEEEeeec
Q 037671           54 YAYSLKELEISRS   66 (187)
Q Consensus        54 ~~~~L~~L~l~~~   66 (187)
                      ..++|+.|++++|
T Consensus       115 ~~~~L~~L~Ls~n  127 (310)
T 4glp_A          115 TGLALSSLRLRNV  127 (310)
T ss_dssp             CCBCCSSCEEESC
T ss_pred             cCCCCCEEEeecc
Confidence            3445555555544

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.81  E-value=1.3e-08  Score=76.67  Aligned_cols=122  Identities=20%  Similarity=0.251  Sum_probs=58.2

Q ss_pred             eeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCC
Q 037671           35 NLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASS  114 (187)
Q Consensus        35 ~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  114 (187)
                      .+++.++.++....   ...+++|+.|++++|    .+++-  ..+   ..+++|+.|+++++. ++..   .....+++
T Consensus       225 ~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n----~l~~~--~~~---~~l~~L~~L~l~~n~-l~~~---~~~~~l~~  288 (347)
T 4fmz_A          225 SLKIGNNKITDLSP---LANLSQLTWLEIGTN----QISDI--NAV---KDLTKLKMLNVGSNQ-ISDI---SVLNNLSQ  288 (347)
T ss_dssp             EEECCSSCCCCCGG---GTTCTTCCEEECCSS----CCCCC--GGG---TTCTTCCEEECCSSC-CCCC---GGGGGCTT
T ss_pred             EEEccCCccCCCcc---hhcCCCCCEEECCCC----ccCCC--hhH---hcCCCcCEEEccCCc-cCCC---hhhcCCCC
Confidence            44555554443211   345566666666644    23321  111   234566666666553 3332   12334566


Q ss_pred             CCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCC
Q 037671          115 LQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLP  177 (187)
Q Consensus       115 L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~  177 (187)
                      |+.|+++++.+++.....+. .+++|++|++++| .+++...   ...+++|++|++++|.++
T Consensus       289 L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          289 LNSLFLNNNQLGNEDMEVIG-GLTNLTTLFLSQN-HITDIRP---LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             CSEEECCSSCCCGGGHHHHH-TCTTCSEEECCSS-SCCCCGG---GGGCTTCSEESSSCC---
T ss_pred             CCEEECcCCcCCCcChhHhh-ccccCCEEEccCC-ccccccC---hhhhhccceeehhhhccc
Confidence            66666666655544433333 3566666666664 3332221   334566666666666553

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.81  E-value=1.4e-09  Score=81.03  Aligned_cols=65  Identities=15%  Similarity=0.149  Sum_probs=29.0

Q ss_pred             CCCCCEEEecCCCCCHH-HHHH--HHhcCCccceeeccCCCCCcH--HHHHHHHhcCCCCcEEEeeCCCCC
Q 037671          112 ASSLQHLNIGGTFITDE-SLYA--IANSCPQLKSIVLWSCRQVTG--NGLLFLVNKCGRLESINVWGTRLP  177 (187)
Q Consensus       112 ~~~L~~L~l~~~~~~~~-~~~~--l~~~~~~L~~L~l~~~~~~~~--~~~~~l~~~~~~L~~L~l~~~~i~  177 (187)
                      +++|++|++++|.+... ++..  ....+++|++|++++| .++.  .....+...+++|++|++++|.++
T Consensus       168 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~  237 (310)
T 4glp_A          168 FPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHNSLR  237 (310)
T ss_dssp             CTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTSCCC
T ss_pred             CCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCCCCC
Confidence            45555555555544332 1111  0123555556666553 3331  111223344555555555555544

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.76  E-value=1.4e-08  Score=75.14  Aligned_cols=59  Identities=17%  Similarity=0.237  Sum_probs=26.9

Q ss_pred             CCCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCC
Q 037671          112 ASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLP  177 (187)
Q Consensus       112 ~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~  177 (187)
                      +++|+.|+++++.+++-   .....+++|++|++++| .+++..-   ...+++|++|++++|.++
T Consensus       133 l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~L~~N-~l~~~~~---l~~l~~L~~L~L~~N~i~  191 (291)
T 1h6t_A          133 LPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDN-QISDIVP---LAGLTKLQNLYLSKNHIS  191 (291)
T ss_dssp             CTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSS-CCCCCGG---GTTCTTCCEEECCSSCCC
T ss_pred             CCCCCEEEccCCcCCcc---hhhccCCCCCEEEccCC-ccccchh---hcCCCccCEEECCCCcCC
Confidence            45555555555444432   11223455555555553 3332221   234555555555555544

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.76  E-value=4.4e-09  Score=78.46  Aligned_cols=12  Identities=25%  Similarity=0.332  Sum_probs=7.9

Q ss_pred             CCCCcEEEeeec
Q 037671           55 AYSLKELEISRS   66 (187)
Q Consensus        55 ~~~L~~L~l~~~   66 (187)
                      +++|++|++++|
T Consensus        94 l~~L~~L~L~~n  105 (312)
T 1wwl_A           94 ISGLQELTLENL  105 (312)
T ss_dssp             TSCCCEEEEEEE
T ss_pred             cCCccEEEccCC
Confidence            566777777665

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.71  E-value=5e-09  Score=71.69  Aligned_cols=131  Identities=15%  Similarity=0.187  Sum_probs=88.4

Q ss_pred             ceeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCC
Q 037671           34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRAS  113 (187)
Q Consensus        34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  113 (187)
                      +.+++.++.++.  +..+....++|+.|++++|    .+++-  ..+   ..+++|+.|+++++. ++... ..+...++
T Consensus        22 ~~L~l~~n~l~~--i~~~~~~~~~L~~L~Ls~N----~l~~~--~~l---~~l~~L~~L~Ls~N~-l~~~~-~~~~~~l~   88 (176)
T 1a9n_A           22 RELDLRGYKIPV--IENLGATLDQFDAIDFSDN----EIRKL--DGF---PLLRRLKTLLVNNNR-ICRIG-EGLDQALP   88 (176)
T ss_dssp             EEEECTTSCCCS--CCCGGGGTTCCSEEECCSS----CCCEE--CCC---CCCSSCCEEECCSSC-CCEEC-SCHHHHCT
T ss_pred             eEEEeeCCCCch--hHHhhhcCCCCCEEECCCC----CCCcc--ccc---ccCCCCCEEECCCCc-ccccC-cchhhcCC
Confidence            457777777663  2344455569999999976    44442  222   347899999999875 65321 12335689


Q ss_pred             CCCEEEecCCCCCHHH-HHHHHhcCCccceeeccCCCCCcHHH--HHHHHhcCCCCcEEEeeCCCCCHH
Q 037671          114 SLQHLNIGGTFITDES-LYAIANSCPQLKSIVLWSCRQVTGNG--LLFLVNKCGRLESINVWGTRLPLD  179 (187)
Q Consensus       114 ~L~~L~l~~~~~~~~~-~~~l~~~~~~L~~L~l~~~~~~~~~~--~~~l~~~~~~L~~L~l~~~~i~~~  179 (187)
                      +|+.|++++|.+++-. +. ....+++|+.|+++++ .++...  -..+...+|+|+.|++++|.+.+.
T Consensus        89 ~L~~L~L~~N~i~~~~~~~-~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~~  155 (176)
T 1a9n_A           89 DLTELILTNNSLVELGDLD-PLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVKLKER  155 (176)
T ss_dssp             TCCEEECCSCCCCCGGGGG-GGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECCHHHH
T ss_pred             CCCEEECCCCcCCcchhhH-hhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCCHHHH
Confidence            9999999998886522 12 2346899999999985 554322  122456799999999999876543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.71  E-value=4e-09  Score=80.93  Aligned_cols=131  Identities=9%  Similarity=0.053  Sum_probs=85.1

Q ss_pred             eeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCC
Q 037671           35 NLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASS  114 (187)
Q Consensus        35 ~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  114 (187)
                      .+++.++.++..   .....+++|+.|++++|    .++......+   ..+++|+.|+++++. ++..  ......+++
T Consensus       230 ~L~l~~n~l~~~---~~l~~l~~L~~L~Ls~n----~l~~~~~~~~---~~l~~L~~L~L~~n~-l~~~--~~~~~~l~~  296 (390)
T 3o6n_A          230 ILKLQHNNLTDT---AWLLNYPGLVEVDLSYN----ELEKIMYHPF---VKMQRLERLYISNNR-LVAL--NLYGQPIPT  296 (390)
T ss_dssp             EEECCSSCCCCC---GGGGGCTTCSEEECCSS----CCCEEESGGG---TTCSSCCEEECCSSC-CCEE--ECSSSCCTT
T ss_pred             EEECCCCCCccc---HHHcCCCCccEEECCCC----cCCCcChhHc---cccccCCEEECCCCc-Cccc--CcccCCCCC
Confidence            345555555443   23456788888888865    4444333333   236888899888775 5432  112235788


Q ss_pred             CCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHhhh
Q 037671          115 LQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPLDCFIGLL  185 (187)
Q Consensus       115 L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~L~  185 (187)
                      |+.|+++++.++.-  ..-...++.|++|++++| .+++..    ...+++|+.|++++|+++.++...++
T Consensus       297 L~~L~L~~n~l~~~--~~~~~~l~~L~~L~L~~N-~i~~~~----~~~~~~L~~L~l~~N~~~~~~~~~~~  360 (390)
T 3o6n_A          297 LKVLDLSHNHLLHV--ERNQPQFDRLENLYLDHN-SIVTLK----LSTHHTLKNLTLSHNDWDCNSLRALF  360 (390)
T ss_dssp             CCEEECCSSCCCCC--GGGHHHHTTCSEEECCSS-CCCCCC----CCTTCCCSEEECCSSCEEHHHHHHHT
T ss_pred             CCEEECCCCcceec--CccccccCcCCEEECCCC-ccceeC----chhhccCCEEEcCCCCccchhHHHHH
Confidence            99999999776521  111234788999999885 555443    35678999999999999888877654

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.70  E-value=2.4e-08  Score=74.40  Aligned_cols=30  Identities=27%  Similarity=0.205  Sum_probs=13.9

Q ss_pred             ceeeecccccCHHHHHHHHhcCCCCcEEEeeec
Q 037671           34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRS   66 (187)
Q Consensus        34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~   66 (187)
                      +.+++.++.+...  . -...+++|+.|++++|
T Consensus        44 ~~L~l~~~~i~~l--~-~~~~l~~L~~L~L~~n   73 (308)
T 1h6u_A           44 TTLSAFGTGVTTI--E-GVQYLNNLIGLELKDN   73 (308)
T ss_dssp             CEEECTTSCCCCC--T-TGGGCTTCCEEECCSS
T ss_pred             CEEEeeCCCccCc--h-hhhccCCCCEEEccCC
Confidence            3445555544321  1 1334555666666544

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.68  E-value=2.5e-10  Score=84.84  Aligned_cols=12  Identities=17%  Similarity=0.199  Sum_probs=6.5

Q ss_pred             CCcEEEeeCCCC
Q 037671          165 RLESINVWGTRL  176 (187)
Q Consensus       165 ~L~~L~l~~~~i  176 (187)
                      +|+.|++++|.+
T Consensus       249 ~L~~L~L~~N~~  260 (306)
T 2z66_A          249 SLAFLNLTQNDF  260 (306)
T ss_dssp             TCCEEECTTCCE
T ss_pred             cCCEEEccCCCe
Confidence            555555555544

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.67  E-value=2.6e-08  Score=80.78  Aligned_cols=81  Identities=20%  Similarity=0.227  Sum_probs=37.6

Q ss_pred             CCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCC
Q 037671           86 ISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGR  165 (187)
Q Consensus        86 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~  165 (187)
                      +++|+.|+++++. ++..  . -...+++|+.|++++|.+++-   .....+++|+.|++++| .+++...   ...+++
T Consensus       108 l~~L~~L~Ls~N~-l~~l--~-~l~~l~~L~~L~Ls~N~l~~l---~~l~~l~~L~~L~Ls~N-~l~~~~~---l~~l~~  176 (605)
T 1m9s_A          108 LKKLKSLSLEHNG-ISDI--N-GLVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDN-QISDIVP---LAGLTK  176 (605)
T ss_dssp             CTTCCEEECTTSC-CCCC--G-GGGGCTTCSEEECCSSCCCCC---GGGGSCTTCSEEECCSS-CCCCCGG---GTTCTT
T ss_pred             CCCCCEEEecCCC-CCCC--c-cccCCCccCEEECCCCccCCc---hhhcccCCCCEEECcCC-cCCCchh---hccCCC
Confidence            4555555555443 3221  1 123355555665555544432   12233555666666553 3332211   234555


Q ss_pred             CcEEEeeCCCCC
Q 037671          166 LESINVWGTRLP  177 (187)
Q Consensus       166 L~~L~l~~~~i~  177 (187)
                      |++|+|++|.++
T Consensus       177 L~~L~Ls~N~i~  188 (605)
T 1m9s_A          177 LQNLYLSKNHIS  188 (605)
T ss_dssp             CCEEECCSSCCC
T ss_pred             CCEEECcCCCCC
Confidence            666666655554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.65  E-value=6.8e-10  Score=78.88  Aligned_cols=131  Identities=15%  Similarity=0.111  Sum_probs=80.0

Q ss_pred             eeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCC
Q 037671           35 NLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASS  114 (187)
Q Consensus        35 ~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  114 (187)
                      .+++.++.++.......+..+++|+.|++++|    .++.-....+   ..+++|+.|+++++. ++.... .....+++
T Consensus        36 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N----~i~~i~~~~~---~~l~~L~~L~Ls~N~-l~~~~~-~~~~~l~~  106 (220)
T 2v70_A           36 ELRLNNNEFTVLEATGIFKKLPQLRKINFSNN----KITDIEEGAF---EGASGVNEILLTSNR-LENVQH-KMFKGLES  106 (220)
T ss_dssp             EEECCSSCCCEECCCCCGGGCTTCCEEECCSS----CCCEECTTTT---TTCTTCCEEECCSSC-CCCCCG-GGGTTCSS
T ss_pred             EEEcCCCcCCccCchhhhccCCCCCEEECCCC----cCCEECHHHh---CCCCCCCEEECCCCc-cCccCH-hHhcCCcC
Confidence            45565555543211223456788888888876    3443222222   236889999998775 443221 12345789


Q ss_pred             CCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCC
Q 037671          115 LQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLP  177 (187)
Q Consensus       115 L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~  177 (187)
                      |++|++++|.++...... ...+++|++|+++++ .++...... ...+++|+.|++++|.++
T Consensus       107 L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A          107 LKTLMLRSNRITCVGNDS-FIGLSSVRLLSLYDN-QITTVAPGA-FDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             CCEEECTTSCCCCBCTTS-STTCTTCSEEECTTS-CCCCBCTTT-TTTCTTCCEEECCSCCEE
T ss_pred             CCEEECCCCcCCeECHhH-cCCCccCCEEECCCC-cCCEECHHH-hcCCCCCCEEEecCcCCc
Confidence            999999987766321111 235788999999884 555432222 346789999999999775

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.63  E-value=5.7e-08  Score=71.79  Aligned_cols=123  Identities=15%  Similarity=0.172  Sum_probs=87.5

Q ss_pred             ceeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCC
Q 037671           34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRAS  113 (187)
Q Consensus        34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  113 (187)
                      +.+++.++.+...  . -...+++|+.|++++|    .+++-..  +   ..+++|+.|+++++. ++..  .. ...++
T Consensus        49 ~~L~l~~~~i~~~--~-~~~~l~~L~~L~L~~n----~l~~~~~--l---~~l~~L~~L~l~~n~-l~~~--~~-l~~l~  112 (291)
T 1h6t_A           49 DQIIANNSDIKSV--Q-GIQYLPNVTKLFLNGN----KLTDIKP--L---ANLKNLGWLFLDENK-VKDL--SS-LKDLK  112 (291)
T ss_dssp             CEEECTTSCCCCC--T-TGGGCTTCCEEECCSS----CCCCCGG--G---TTCTTCCEEECCSSC-CCCG--GG-GTTCT
T ss_pred             cEEEccCCCcccC--h-hHhcCCCCCEEEccCC----ccCCCcc--c---ccCCCCCEEECCCCc-CCCC--hh-hccCC
Confidence            5667777766543  2 2567899999999976    4444322  2   347999999999876 5542  22 45689


Q ss_pred             CCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCCHH
Q 037671          114 SLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPLD  179 (187)
Q Consensus       114 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~  179 (187)
                      +|+.|+++++.+++-  .. ...+++|+.|++++| .+++.   .....+++|++|++++|.+++.
T Consensus       113 ~L~~L~L~~n~i~~~--~~-l~~l~~L~~L~l~~n-~l~~~---~~l~~l~~L~~L~L~~N~l~~~  171 (291)
T 1h6t_A          113 KLKSLSLEHNGISDI--NG-LVHLPQLESLYLGNN-KITDI---TVLSRLTKLDTLSLEDNQISDI  171 (291)
T ss_dssp             TCCEEECTTSCCCCC--GG-GGGCTTCCEEECCSS-CCCCC---GGGGGCTTCSEEECCSSCCCCC
T ss_pred             CCCEEECCCCcCCCC--hh-hcCCCCCCEEEccCC-cCCcc---hhhccCCCCCEEEccCCccccc
Confidence            999999999877752  22 345899999999985 55543   2245689999999999988653

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.63  E-value=4.3e-09  Score=82.18  Aligned_cols=32  Identities=6%  Similarity=0.049  Sum_probs=15.9

Q ss_pred             ceeeecccccCHHHHHHHHhcCCCCcEEEeeec
Q 037671           34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRS   66 (187)
Q Consensus        34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~   66 (187)
                      +.+++.++.++... ...+..+++|+.|++++|
T Consensus        33 ~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~n   64 (455)
T 3v47_A           33 NYVDLSLNSIAELN-ETSFSRLQDLQFLKVEQQ   64 (455)
T ss_dssp             CEEECCSSCCCEEC-TTTTSSCTTCCEEECCCC
T ss_pred             CEEEecCCccCcCC-hhHhccCccccEEECcCC
Confidence            34555555544321 112334566666666654

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.62  E-value=5.5e-08  Score=72.42  Aligned_cols=30  Identities=20%  Similarity=0.244  Sum_probs=16.7

Q ss_pred             ceeeecccccCHHHHHHHHhcCCCCcEEEeeec
Q 037671           34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRS   66 (187)
Q Consensus        34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~   66 (187)
                      +.+++.++.+.....   ...+++|+.|++++|
T Consensus        66 ~~L~L~~n~i~~~~~---~~~l~~L~~L~L~~n   95 (308)
T 1h6u_A           66 IGLELKDNQITDLAP---LKNLTKITELELSGN   95 (308)
T ss_dssp             CEEECCSSCCCCCGG---GTTCCSCCEEECCSC
T ss_pred             CEEEccCCcCCCChh---HccCCCCCEEEccCC
Confidence            445666655543221   455666777777655

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.59  E-value=1e-08  Score=74.93  Aligned_cols=13  Identities=15%  Similarity=0.342  Sum_probs=6.5

Q ss_pred             cCCCCcEEEeeec
Q 037671           54 YAYSLKELEISRS   66 (187)
Q Consensus        54 ~~~~L~~L~l~~~   66 (187)
                      .+++|+.|++++|
T Consensus        61 ~l~~L~~L~l~~n   73 (272)
T 3rfs_A           61 YLPNVRYLALGGN   73 (272)
T ss_dssp             GCTTCCEEECTTS
T ss_pred             cCCCCcEEECCCC
Confidence            3455555555543

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.58  E-value=2.1e-08  Score=78.30  Aligned_cols=11  Identities=9%  Similarity=0.175  Sum_probs=8.3

Q ss_pred             CCCcEEEeeec
Q 037671           56 YSLKELEISRS   66 (187)
Q Consensus        56 ~~L~~L~l~~~   66 (187)
                      +++++|++++|
T Consensus        30 ~~l~~L~Ls~n   40 (455)
T 3v47_A           30 AHVNYVDLSLN   40 (455)
T ss_dssp             TTCCEEECCSS
T ss_pred             CccCEEEecCC
Confidence            56888888865

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.58  E-value=4e-09  Score=73.55  Aligned_cols=112  Identities=21%  Similarity=0.177  Sum_probs=57.7

Q ss_pred             HHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHH
Q 037671           51 LVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESL  130 (187)
Q Consensus        51 ~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  130 (187)
                      .+..+++|+.|++++|    .++.-  ..+   ..+++|+.|+++++. ++.  +......+++|+.|++++|.++.-  
T Consensus        43 ~~~~l~~L~~L~ls~n----~l~~l--~~~---~~l~~L~~L~l~~n~-l~~--l~~~~~~~~~L~~L~L~~N~l~~l--  108 (198)
T 1ds9_A           43 TLSTLKACKHLALSTN----NIEKI--SSL---SGMENLRILSLGRNL-IKK--IENLDAVADTLEELWISYNQIASL--  108 (198)
T ss_dssp             HHHHTTTCSEEECSEE----EESCC--CCH---HHHTTCCEEEEEEEE-ECS--CSSHHHHHHHCSEEEEEEEECCCH--
T ss_pred             HHhcCCCCCEEECCCC----CCccc--ccc---ccCCCCCEEECCCCC-ccc--ccchhhcCCcCCEEECcCCcCCcC--
Confidence            4455777888888765    33331  111   224667777776553 331  222223345666666666555541  


Q ss_pred             HHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCCH
Q 037671          131 YAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPL  178 (187)
Q Consensus       131 ~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~  178 (187)
                      ..+ ..+++|++|+++++ .+++.........+++|++|++++|.++.
T Consensus       109 ~~~-~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l~~  154 (198)
T 1ds9_A          109 SGI-EKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             HHH-HHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred             Ccc-ccCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence            122 23556666666663 44432221222346666666666665543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.58  E-value=5.4e-09  Score=73.38  Aligned_cols=131  Identities=12%  Similarity=0.098  Sum_probs=80.5

Q ss_pred             ceeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCC
Q 037671           34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRAS  113 (187)
Q Consensus        34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  113 (187)
                      +.+++.++.++.. ....+..+++|+.|++++|    .++.-....+   ..+++|++|+++++. ++.... .....++
T Consensus        31 ~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n----~l~~~~~~~~---~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~  100 (208)
T 2o6s_A           31 TYLDLETNSLKSL-PNGVFDELTSLTQLYLGGN----KLQSLPNGVF---NKLTSLTYLNLSTNQ-LQSLPN-GVFDKLT  100 (208)
T ss_dssp             SEEECCSSCCCCC-CTTTTTTCTTCSEEECCSS----CCCCCCTTTT---TTCTTCCEEECCSSC-CCCCCT-TTTTTCT
T ss_pred             cEEEcCCCccCcC-ChhhhcccccCcEEECCCC----ccCccChhhc---CCCCCcCEEECCCCc-CCccCH-hHhcCcc
Confidence            4566666655421 1223456788999999876    3442222111   336889999998775 442211 1234578


Q ss_pred             CCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCC
Q 037671          114 SLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLP  177 (187)
Q Consensus       114 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~  177 (187)
                      +|+.|+++++.++.... .....+++|++|+++++ .++...- .....+++|++|++++|.++
T Consensus       101 ~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~~~  161 (208)
T 2o6s_A          101 QLKELALNTNQLQSLPD-GVFDKLTQLKDLRLYQN-QLKSVPD-GVFDRLTSLQYIWLHDNPWD  161 (208)
T ss_dssp             TCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSS-CCSCCCT-TTTTTCTTCCEEECCSCCBC
T ss_pred             CCCEEEcCCCcCcccCH-hHhccCCcCCEEECCCC-ccceeCH-HHhccCCCccEEEecCCCee
Confidence            99999999877663211 12345788999999885 5553321 22346789999999998665

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.58  E-value=5.9e-09  Score=76.28  Aligned_cols=133  Identities=19%  Similarity=0.121  Sum_probs=76.9

Q ss_pred             ceeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCC
Q 037671           34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRAS  113 (187)
Q Consensus        34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  113 (187)
                      +.+++.++.++..... .+..+++|+.|++++|    .++......+   ..+++|+.|+++++. ++..... ....++
T Consensus        31 ~~L~ls~n~l~~~~~~-~~~~l~~L~~L~l~~n----~l~~~~~~~~---~~l~~L~~L~L~~n~-l~~~~~~-~~~~l~  100 (276)
T 2z62_A           31 KNLDLSFNPLRHLGSY-SFFSFPELQVLDLSRC----EIQTIEDGAY---QSLSHLSTLILTGNP-IQSLALG-AFSGLS  100 (276)
T ss_dssp             CEEECTTCCCCEECTT-TTTTCTTCSEEECTTC----CCCEECTTTT---TTCTTCCEEECTTCC-CCEECTT-TTTTCT
T ss_pred             cEEECCCCcccccCHh-HhccccCCcEEECCCC----cCCccCHHHc---cCCcCCCEEECCCCc-cCccChh-hhcCCc
Confidence            4566666655432211 2345678888888865    3443222222   236788888887775 4433221 123467


Q ss_pred             CCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCCH
Q 037671          114 SLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPL  178 (187)
Q Consensus       114 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~  178 (187)
                      +|+.|+++++.++...... ...+++|++|+++++ .++...+......+++|++|++++|.++.
T Consensus       101 ~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~  163 (276)
T 2z62_A          101 SLQKLVAVETNLASLENFP-IGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKIQS  163 (276)
T ss_dssp             TCCEEECTTSCCCCSTTCC-CTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred             cccEEECCCCCccccCchh-cccCCCCCEEECcCC-ccceecCchhhccCCCCCEEECCCCCCCc
Confidence            8888888876554321111 234677888888774 55442222234467888888888887653

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.57  E-value=1.6e-08  Score=81.83  Aligned_cols=131  Identities=9%  Similarity=0.062  Sum_probs=83.8

Q ss_pred             eeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCC
Q 037671           35 NLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASS  114 (187)
Q Consensus        35 ~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  114 (187)
                      .+.+.++.++..   .....+++|+.|++++|    .++......+   ..+++|+.|+++++. ++..  ......+++
T Consensus       236 ~L~L~~n~l~~~---~~l~~l~~L~~L~Ls~N----~l~~~~~~~~---~~l~~L~~L~Ls~N~-l~~l--~~~~~~l~~  302 (597)
T 3oja_B          236 ILKLQHNNLTDT---AWLLNYPGLVEVDLSYN----ELEKIMYHPF---VKMQRLERLYISNNR-LVAL--NLYGQPIPT  302 (597)
T ss_dssp             EEECCSSCCCCC---GGGGGCTTCSEEECCSS----CCCEEESGGG---TTCSSCCEEECTTSC-CCEE--ECSSSCCTT
T ss_pred             EEECCCCCCCCC---hhhccCCCCCEEECCCC----ccCCCCHHHh---cCccCCCEEECCCCC-CCCC--CcccccCCC
Confidence            345555555432   33456778888888865    4444433333   236888888888775 4432  122234788


Q ss_pred             CCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHhhh
Q 037671          115 LQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPLDCFIGLL  185 (187)
Q Consensus       115 L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~L~  185 (187)
                      |+.|++++|.++.  +......++.|+.|++++| .++...    ...+++|+.|++++|+++.++...++
T Consensus       303 L~~L~Ls~N~l~~--i~~~~~~l~~L~~L~L~~N-~l~~~~----~~~~~~L~~L~l~~N~~~~~~~~~~~  366 (597)
T 3oja_B          303 LKVLDLSHNHLLH--VERNQPQFDRLENLYLDHN-SIVTLK----LSTHHTLKNLTLSHNDWDCNSLRALF  366 (597)
T ss_dssp             CCEEECCSSCCCC--CGGGHHHHTTCSEEECCSS-CCCCCC----CCTTCCCSEEECCSSCEEHHHHHHHT
T ss_pred             CcEEECCCCCCCc--cCcccccCCCCCEEECCCC-CCCCcC----hhhcCCCCEEEeeCCCCCChhHHHHH
Confidence            9999999877662  1111244788999999885 554433    34678999999999998877765543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.57  E-value=5.2e-09  Score=76.92  Aligned_cols=65  Identities=11%  Similarity=0.061  Sum_probs=31.4

Q ss_pred             cCCCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCCH
Q 037671          111 RASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPL  178 (187)
Q Consensus       111 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~  178 (187)
                      .+++|+.|+++++.++.... .....+++|++|+++++ .++..... ....+++|++|++++|.++.
T Consensus       127 ~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~n~l~~  191 (285)
T 1ozn_A          127 GLAALQYLYLQDNALQALPD-DTFRDLGNLTHLFLHGN-RISSVPER-AFRGLHSLDRLLLHQNRVAH  191 (285)
T ss_dssp             TCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSS-CCCEECTT-TTTTCTTCCEEECCSSCCCE
T ss_pred             CCcCCCEEECCCCcccccCH-hHhccCCCccEEECCCC-cccccCHH-HhcCccccCEEECCCCcccc
Confidence            35556666666544432111 11123556666666653 44322211 12345667777777666543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.56  E-value=2.7e-09  Score=81.26  Aligned_cols=132  Identities=16%  Similarity=0.093  Sum_probs=73.7

Q ss_pred             eeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCC
Q 037671           35 NLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASS  114 (187)
Q Consensus        35 ~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  114 (187)
                      .+++.+++++......+...+++|+.|++++|    .++.-....+   ..+++|++|+++++. ++.... .....+++
T Consensus        43 ~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N----~i~~i~~~~~---~~l~~L~~L~Ls~N~-l~~~~~-~~~~~l~~  113 (361)
T 2xot_A           43 LLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN----HLNFISSEAF---VPVPNLRYLDLSSNH-LHTLDE-FLFSDLQA  113 (361)
T ss_dssp             EEECCSSCCCEECTTSSSSCCTTCCEEECCSS----CCCEECTTTT---TTCTTCCEEECCSSC-CCEECT-TTTTTCTT
T ss_pred             EEECCCCCCCccChhhhhhcccccCEEECCCC----cCCccChhhc---cCCCCCCEEECCCCc-CCcCCH-HHhCCCcC
Confidence            45565655543221111125677888888766    3333222222   236788888887765 443211 12235688


Q ss_pred             CCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHH--hcCCCCcEEEeeCCCCC
Q 037671          115 LQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLV--NKCGRLESINVWGTRLP  177 (187)
Q Consensus       115 L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~--~~~~~L~~L~l~~~~i~  177 (187)
                      |+.|++++|.++.-.... ...+++|++|+++++ .++......+.  ..+++|+.|++++|.++
T Consensus       114 L~~L~L~~N~i~~~~~~~-~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~  176 (361)
T 2xot_A          114 LEVLLLYNNHIVVVDRNA-FEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNKLK  176 (361)
T ss_dssp             CCEEECCSSCCCEECTTT-TTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred             CCEEECCCCcccEECHHH-hCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence            888888887665321111 234778888888874 55443222111  34788888888888665

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.55  E-value=1.8e-08  Score=68.84  Aligned_cols=110  Identities=14%  Similarity=0.124  Sum_probs=76.1

Q ss_pred             CCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHH
Q 037671           55 AYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIA  134 (187)
Q Consensus        55 ~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~  134 (187)
                      +++|+.|++++|    .++.-  ..+  ....++|+.|+++++. ++.-   .....+++|+.|++++|.++.-. ..+.
T Consensus        18 ~~~L~~L~l~~n----~l~~i--~~~--~~~~~~L~~L~Ls~N~-l~~~---~~l~~l~~L~~L~Ls~N~l~~~~-~~~~   84 (176)
T 1a9n_A           18 AVRDRELDLRGY----KIPVI--ENL--GATLDQFDAIDFSDNE-IRKL---DGFPLLRRLKTLLVNNNRICRIG-EGLD   84 (176)
T ss_dssp             TTSCEEEECTTS----CCCSC--CCG--GGGTTCCSEEECCSSC-CCEE---CCCCCCSSCCEEECCSSCCCEEC-SCHH
T ss_pred             cCCceEEEeeCC----CCchh--HHh--hhcCCCCCEEECCCCC-CCcc---cccccCCCCCEEECCCCcccccC-cchh
Confidence            567999999976    44421  122  2335699999999886 6653   23345889999999998877321 1233


Q ss_pred             hcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCCH
Q 037671          135 NSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPL  178 (187)
Q Consensus       135 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~  178 (187)
                      ..++.|+.|+++++ .+++-.-......+++|+.|++++|.++.
T Consensus        85 ~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~i~~  127 (176)
T 1a9n_A           85 QALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNPVTN  127 (176)
T ss_dssp             HHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSGGGG
T ss_pred             hcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCCCCC
Confidence            56899999999985 66543311123468999999999998753

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.55  E-value=1.8e-08  Score=81.77  Aligned_cols=85  Identities=18%  Similarity=0.210  Sum_probs=65.0

Q ss_pred             ccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcC
Q 037671           84 KCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKC  163 (187)
Q Consensus        84 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~  163 (187)
                      ..+++|+.|+++++. ++..   ..+..+++|+.|+|++|.+++...   ...++.|++|++++| .+++..  . ...+
T Consensus       128 ~~l~~L~~L~Ls~N~-l~~l---~~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N-~i~~l~--~-l~~l  196 (605)
T 1m9s_A          128 VHLPQLESLYLGNNK-ITDI---TVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKN-HISDLR--A-LAGL  196 (605)
T ss_dssp             GGCTTCSEEECCSSC-CCCC---GGGGSCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSS-CCCBCG--G-GTTC
T ss_pred             cCCCccCEEECCCCc-cCCc---hhhcccCCCCEEECcCCcCCCchh---hccCCCCCEEECcCC-CCCCCh--H-HccC
Confidence            457999999999886 5543   334568999999999988775322   456899999999986 665532  2 3568


Q ss_pred             CCCcEEEeeCCCCCHH
Q 037671          164 GRLESINVWGTRLPLD  179 (187)
Q Consensus       164 ~~L~~L~l~~~~i~~~  179 (187)
                      ++|+.|++++|.+++.
T Consensus       197 ~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          197 KNLDVLELFSQECLNK  212 (605)
T ss_dssp             TTCSEEECCSEEEECC
T ss_pred             CCCCEEEccCCcCcCC
Confidence            9999999999977654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=98.55  E-value=5.6e-09  Score=78.51  Aligned_cols=75  Identities=13%  Similarity=0.128  Sum_probs=33.0

Q ss_pred             eeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCC
Q 037671           35 NLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASS  114 (187)
Q Consensus        35 ~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  114 (187)
                      .+++.++.++  .+..-...+++|+.|++++|.    ++ .....+   ..+++|++|+++++. ++  .+......+++
T Consensus        85 ~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~n~----l~-~lp~~~---~~l~~L~~L~Ls~n~-l~--~lp~~l~~l~~  151 (328)
T 4fcg_A           85 ALELRSVPLP--QFPDQAFRLSHLQHMTIDAAG----LM-ELPDTM---QQFAGLETLTLARNP-LR--ALPASIASLNR  151 (328)
T ss_dssp             EEEEESSCCS--SCCSCGGGGTTCSEEEEESSC----CC-CCCSCG---GGGTTCSEEEEESCC-CC--CCCGGGGGCTT
T ss_pred             EEEccCCCch--hcChhhhhCCCCCEEECCCCC----cc-chhHHH---hccCCCCEEECCCCc-cc--cCcHHHhcCcC
Confidence            4555555443  121112335667777776552    22 111111   224556666665553 33  11112233555


Q ss_pred             CCEEEecC
Q 037671          115 LQHLNIGG  122 (187)
Q Consensus       115 L~~L~l~~  122 (187)
                      |+.|++++
T Consensus       152 L~~L~L~~  159 (328)
T 4fcg_A          152 LRELSIRA  159 (328)
T ss_dssp             CCEEEEEE
T ss_pred             CCEEECCC
Confidence            55555555

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.55  E-value=4.7e-08  Score=71.22  Aligned_cols=120  Identities=16%  Similarity=0.214  Sum_probs=58.3

Q ss_pred             ceeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCC
Q 037671           34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRAS  113 (187)
Q Consensus        34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  113 (187)
                      +.+++.++.++...   -...+++|+.|++++|    .+++-..  +   ..+++|+.|+++++. ++.-  ..+. . +
T Consensus        44 ~~L~l~~n~i~~l~---~l~~l~~L~~L~L~~N----~i~~~~~--l---~~l~~L~~L~L~~N~-l~~l--~~~~-~-~  106 (263)
T 1xeu_A           44 QNFNGDNSNIQSLA---GMQFFTNLKELHLSHN----QISDLSP--L---KDLTKLEELSVNRNR-LKNL--NGIP-S-A  106 (263)
T ss_dssp             SEEECTTSCCCCCT---TGGGCTTCCEEECCSS----CCCCCGG--G---TTCSSCCEEECCSSC-CSCC--TTCC-C-S
T ss_pred             cEEECcCCCcccch---HHhhCCCCCEEECCCC----ccCCChh--h---ccCCCCCEEECCCCc-cCCc--Cccc-c-C
Confidence            45666666655322   2456778888888765    3333221  2   235667777776554 3321  0111 1 5


Q ss_pred             CCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCC
Q 037671          114 SLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLP  177 (187)
Q Consensus       114 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~  177 (187)
                      +|+.|+++++.+++-  .. ...+++|++|+++++ .+++..   ....+++|+.|++++|.++
T Consensus       107 ~L~~L~L~~N~l~~~--~~-l~~l~~L~~L~Ls~N-~i~~~~---~l~~l~~L~~L~L~~N~i~  163 (263)
T 1xeu_A          107 CLSRLFLDNNELRDT--DS-LIHLKNLEILSIRNN-KLKSIV---MLGFLSKLEVLDLHGNEIT  163 (263)
T ss_dssp             SCCEEECCSSCCSBS--GG-GTTCTTCCEEECTTS-CCCBCG---GGGGCTTCCEEECTTSCCC
T ss_pred             cccEEEccCCccCCC--hh-hcCcccccEEECCCC-cCCCCh---HHccCCCCCEEECCCCcCc
Confidence            555555555544431  11 223555555555553 333321   1233455555555555444

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.55  E-value=1.9e-08  Score=79.90  Aligned_cols=124  Identities=15%  Similarity=0.058  Sum_probs=57.3

Q ss_pred             eeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCC
Q 037671           35 NLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASS  114 (187)
Q Consensus        35 ~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  114 (187)
                      .+++.++.++... ...+..+++|+.|++++|    .++......+   ..+++|++|+++++. ++.  +...  .+++
T Consensus        25 ~L~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~n----~l~~~~~~~~---~~l~~L~~L~Ls~N~-l~~--lp~~--~l~~   91 (520)
T 2z7x_B           25 ILNISQNYISELW-TSDILSLSKLRILIISHN----RIQYLDISVF---KFNQELEYLDLSHNK-LVK--ISCH--PTVN   91 (520)
T ss_dssp             EEECCSSCCCCCC-HHHHTTCTTCCEEECCSS----CCCEEEGGGG---TTCTTCCEEECCSSC-CCE--EECC--CCCC
T ss_pred             EEECCCCcccccC-hhhccccccccEEecCCC----ccCCcChHHh---hcccCCCEEecCCCc-eee--cCcc--ccCC
Confidence            3455555443221 122344566666666654    3333222222   224566666666553 332  1111  3566


Q ss_pred             CCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCC--cEEEeeCCCC
Q 037671          115 LQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRL--ESINVWGTRL  176 (187)
Q Consensus       115 L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L--~~L~l~~~~i  176 (187)
                      |++|+++++.++.-.+......+++|++|+++++ .++...    ...+++|  +.|++++|.+
T Consensus        92 L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n-~l~~~~----~~~l~~L~L~~L~l~~n~l  150 (520)
T 2z7x_B           92 LKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTT-HLEKSS----VLPIAHLNISKVLLVLGET  150 (520)
T ss_dssp             CSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEES-SCCGGG----GGGGTTSCEEEEEEEECTT
T ss_pred             ccEEeccCCccccccchhhhccCCcceEEEecCc-ccchhh----ccccccceeeEEEeecccc
Confidence            6666666655443111111233566666666653 444322    1234455  6666666655

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.53  E-value=2.8e-09  Score=86.13  Aligned_cols=11  Identities=36%  Similarity=0.199  Sum_probs=5.2

Q ss_pred             CCCCcEEEeee
Q 037671           55 AYSLKELEISR   65 (187)
Q Consensus        55 ~~~L~~L~l~~   65 (187)
                      +++|+.|++++
T Consensus       423 l~~L~~L~l~~  433 (606)
T 3vq2_A          423 LEKLLYLDISY  433 (606)
T ss_dssp             CTTCCEEECTT
T ss_pred             cccCCEEECcC
Confidence            44455555543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.53  E-value=1.7e-08  Score=74.21  Aligned_cols=87  Identities=15%  Similarity=0.112  Sum_probs=46.5

Q ss_pred             CCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCC
Q 037671           86 ISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGR  165 (187)
Q Consensus        86 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~  165 (187)
                      +++|+.|+++++. ++..... ....+++|+.|+++++.++......+ ..++.|++|+++++ .+++..... ...+++
T Consensus       152 l~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~  226 (285)
T 1ozn_A          152 LGNLTHLFLHGNR-ISSVPER-AFRGLHSLDRLLLHQNRVAHVHPHAF-RDLGRLMTLYLFAN-NLSALPTEA-LAPLRA  226 (285)
T ss_dssp             CTTCCEEECCSSC-CCEECTT-TTTTCTTCCEEECCSSCCCEECTTTT-TTCTTCCEEECCSS-CCSCCCHHH-HTTCTT
T ss_pred             CCCccEEECCCCc-ccccCHH-HhcCccccCEEECCCCcccccCHhHc-cCcccccEeeCCCC-cCCcCCHHH-cccCcc
Confidence            4556666665543 3321111 12235666777776665543221122 23667777777764 555443322 345777


Q ss_pred             CcEEEeeCCCCC
Q 037671          166 LESINVWGTRLP  177 (187)
Q Consensus       166 L~~L~l~~~~i~  177 (187)
                      |+.|++++|.++
T Consensus       227 L~~L~l~~N~~~  238 (285)
T 1ozn_A          227 LQYLRLNDNPWV  238 (285)
T ss_dssp             CCEEECCSSCEE
T ss_pred             cCEEeccCCCcc
Confidence            888888777664

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.52  E-value=2.2e-09  Score=86.03  Aligned_cols=89  Identities=16%  Similarity=0.164  Sum_probs=52.7

Q ss_pred             CCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCC
Q 037671           86 ISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGR  165 (187)
Q Consensus        86 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~  165 (187)
                      +++|+.|+++++. +++..+......+++|+.|++++|.++......+ ..+++|++|++++| .+++.... ....+++
T Consensus       444 l~~L~~L~l~~n~-l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~  519 (570)
T 2z63_A          444 LSSLEVLKMAGNS-FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF-NSLSSLQVLNMASN-QLKSVPDG-IFDRLTS  519 (570)
T ss_dssp             CTTCCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT-TTCTTCCEEECCSS-CCSCCCTT-TTTTCTT
T ss_pred             CCcCcEEECcCCc-CccccchhhhhcccCCCEEECCCCccccCChhhh-hcccCCCEEeCCCC-cCCCCCHH-HhhcccC
Confidence            5677777776664 4322222333456778888888776654322222 34677888888775 44433221 2245778


Q ss_pred             CcEEEeeCCCCCH
Q 037671          166 LESINVWGTRLPL  178 (187)
Q Consensus       166 L~~L~l~~~~i~~  178 (187)
                      |+.|++++|+++.
T Consensus       520 L~~L~l~~N~~~~  532 (570)
T 2z63_A          520 LQKIWLHTNPWDC  532 (570)
T ss_dssp             CCEEECCSSCBCC
T ss_pred             CcEEEecCCcccC
Confidence            8888888886653

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.51  E-value=8.5e-09  Score=75.30  Aligned_cols=14  Identities=7%  Similarity=0.119  Sum_probs=7.1

Q ss_pred             CCCCcEEEeeCCCC
Q 037671          163 CGRLESINVWGTRL  176 (187)
Q Consensus       163 ~~~L~~L~l~~~~i  176 (187)
                      +++|+.|++++|++
T Consensus       204 l~~L~~L~l~~N~~  217 (270)
T 2o6q_A          204 LEKLKMLQLQENPW  217 (270)
T ss_dssp             CTTCCEEECCSSCB
T ss_pred             ccCCCEEEecCCCe
Confidence            44555555555543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.50  E-value=1.3e-08  Score=74.51  Aligned_cols=30  Identities=20%  Similarity=0.230  Sum_probs=18.0

Q ss_pred             ceeeecccccCHHHHHHHHhcCCCCcEEEeeec
Q 037671           34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRS   66 (187)
Q Consensus        34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~   66 (187)
                      +.+++.++.++..   .....+++|+.|++++|
T Consensus        66 ~~L~l~~n~l~~~---~~l~~l~~L~~L~L~~n   95 (272)
T 3rfs_A           66 RYLALGGNKLHDI---SALKELTNLTYLILTGN   95 (272)
T ss_dssp             CEEECTTSCCCCC---GGGTTCTTCCEEECTTS
T ss_pred             cEEECCCCCCCCc---hhhcCCCCCCEEECCCC
Confidence            4566666665542   13345677888888765

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.49  E-value=2.4e-08  Score=72.09  Aligned_cols=64  Identities=14%  Similarity=0.260  Sum_probs=28.1

Q ss_pred             CCCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCCH
Q 037671          112 ASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPL  178 (187)
Q Consensus       112 ~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~  178 (187)
                      +++|+.|+++++.++.-.. .....+++|++|+++++ .++.... .....+++|+.|++++|.++.
T Consensus       130 l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          130 LTKLKELRLNTNQLQSIPA-GAFDKLTNLQTLSLSTN-QLQSVPH-GAFDRLGKLQTITLFGNQFDC  193 (251)
T ss_dssp             CTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSS-CCSCCCT-TTTTTCTTCCEEECCSCCBCT
T ss_pred             CCcccEEECcCCcCCccCH-HHcCcCcCCCEEECCCC-cCCccCH-HHHhCCCCCCEEEeeCCceeC
Confidence            4455555555544332100 01123455555555553 3332221 112345566666666665543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.48  E-value=5.5e-08  Score=70.84  Aligned_cols=122  Identities=16%  Similarity=0.187  Sum_probs=87.8

Q ss_pred             ceeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCC
Q 037671           34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRAS  113 (187)
Q Consensus        34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  113 (187)
                      +.+++.++.++....   +..+++|+.|++++|    .+++-.  .+   .. ++|+.|+++++. ++..  . ....++
T Consensus        66 ~~L~L~~N~i~~~~~---l~~l~~L~~L~L~~N----~l~~l~--~~---~~-~~L~~L~L~~N~-l~~~--~-~l~~l~  128 (263)
T 1xeu_A           66 KELHLSHNQISDLSP---LKDLTKLEELSVNRN----RLKNLN--GI---PS-ACLSRLFLDNNE-LRDT--D-SLIHLK  128 (263)
T ss_dssp             CEEECCSSCCCCCGG---GTTCSSCCEEECCSS----CCSCCT--TC---CC-SSCCEEECCSSC-CSBS--G-GGTTCT
T ss_pred             CEEECCCCccCCChh---hccCCCCCEEECCCC----ccCCcC--cc---cc-CcccEEEccCCc-cCCC--h-hhcCcc
Confidence            567777777764322   667899999999977    444421  12   12 889999999886 5553  1 245689


Q ss_pred             CCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCCHH
Q 037671          114 SLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPLD  179 (187)
Q Consensus       114 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~  179 (187)
                      +|+.|++++|.+++-  . ....+++|++|+++++ .+++.   .....+++|+.|++++|.++..
T Consensus       129 ~L~~L~Ls~N~i~~~--~-~l~~l~~L~~L~L~~N-~i~~~---~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          129 NLEILSIRNNKLKSI--V-MLGFLSKLEVLDLHGN-EITNT---GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             TCCEEECTTSCCCBC--G-GGGGCTTCCEEECTTS-CCCBC---TTSTTCCCCCEEEEEEEEEECC
T ss_pred             cccEEECCCCcCCCC--h-HHccCCCCCEEECCCC-cCcch---HHhccCCCCCEEeCCCCcccCC
Confidence            999999999888763  2 2455899999999985 66654   2235689999999999977544

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.48  E-value=2e-07  Score=73.18  Aligned_cols=60  Identities=13%  Similarity=0.154  Sum_probs=28.4

Q ss_pred             cCCCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCC
Q 037671          111 RASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLP  177 (187)
Q Consensus       111 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~  177 (187)
                      .+++|+.|+++++.+++...   ...+++|++|++++| .+++..  . ...+++|+.|++++|.++
T Consensus       307 ~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~n-~l~~~~--~-l~~l~~L~~L~l~~n~l~  366 (466)
T 1o6v_A          307 NLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFYNN-KVSDVS--S-LANLTNINWLSAGHNQIS  366 (466)
T ss_dssp             GCTTCSEEECCSSCCSCCGG---GGGCTTCCEEECCSS-CCCCCG--G-GTTCTTCCEEECCSSCCC
T ss_pred             CCCCCCEEECcCCcCCCchh---hccCccCCEeECCCC-ccCCch--h-hccCCCCCEEeCCCCccC
Confidence            35555555555554443211   234555555555554 333221  1 234555666666655554

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.48  E-value=1e-08  Score=74.03  Aligned_cols=131  Identities=14%  Similarity=0.146  Sum_probs=86.2

Q ss_pred             ceeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCC
Q 037671           34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRAS  113 (187)
Q Consensus        34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  113 (187)
                      +.+++.++.+..... ..+..+++|+.|++++|    .++......+   ..+++|+.|+++++. ++.... .....++
T Consensus        38 ~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n----~l~~~~~~~~---~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~  107 (251)
T 3m19_A           38 EKLDLQSTGLATLSD-ATFRGLTKLTWLNLDYN----QLQTLSAGVF---DDLTELGTLGLANNQ-LASLPL-GVFDHLT  107 (251)
T ss_dssp             CEEECTTSCCCCCCT-TTTTTCTTCCEEECTTS----CCCCCCTTTT---TTCTTCCEEECTTSC-CCCCCT-TTTTTCT
T ss_pred             CEEEccCCCcCccCH-hHhcCcccCCEEECCCC----cCCccCHhHh---ccCCcCCEEECCCCc-ccccCh-hHhcccC
Confidence            456777766553221 23446789999999976    4444332222   346899999998875 543221 2234589


Q ss_pred             CCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCC
Q 037671          114 SLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLP  177 (187)
Q Consensus       114 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~  177 (187)
                      +|+.|+++++.++.-. ......++.|++|+++++ .++..... ....+++|++|++++|.++
T Consensus       108 ~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~L~~N~l~  168 (251)
T 3m19_A          108 QLDKLYLGGNQLKSLP-SGVFDRLTKLKELRLNTN-QLQSIPAG-AFDKLTNLQTLSLSTNQLQ  168 (251)
T ss_dssp             TCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSSCCS
T ss_pred             CCCEEEcCCCcCCCcC-hhHhccCCcccEEECcCC-cCCccCHH-HcCcCcCCCEEECCCCcCC
Confidence            9999999998776311 112345889999999985 66543321 2346899999999999775

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.48  E-value=1.4e-07  Score=74.96  Aligned_cols=86  Identities=16%  Similarity=0.186  Sum_probs=44.2

Q ss_pred             cCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCH-HHHHHHHhcCCCCCEEEecCCCCCHHHHHH
Q 037671           54 YAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITD-KGVVQLISRASSLQHLNIGGTFITDESLYA  132 (187)
Q Consensus        54 ~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  132 (187)
                      .+++|+.|++++|    .+++.....+   ..+++|+.|+++++. ++. ..+......+++|+.|++++|.++...-..
T Consensus       322 ~l~~L~~L~Ls~n----~l~~~~~~~~---~~l~~L~~L~L~~N~-l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~  393 (520)
T 2z7x_B          322 KISPFLHLDFSNN----LLTDTVFENC---GHLTELETLILQMNQ-LKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG  393 (520)
T ss_dssp             SCCCCCEEECCSS----CCCTTTTTTC---CCCSSCCEEECCSSC-CCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGC
T ss_pred             hCCcccEEEeECC----ccChhhhhhh---ccCCCCCEEEccCCc-cCccccchHHHhhCCCCCEEECCCCcCCcccccc
Confidence            4566777777654    4444333222   235677777777665 443 223334445677777777776554311111


Q ss_pred             HHhcCCccceeeccC
Q 037671          133 IANSCPQLKSIVLWS  147 (187)
Q Consensus       133 l~~~~~~L~~L~l~~  147 (187)
                      ....++.|++|++++
T Consensus       394 ~~~~l~~L~~L~Ls~  408 (520)
T 2z7x_B          394 DCSWTKSLLSLNMSS  408 (520)
T ss_dssp             SCCCCTTCCEEECCS
T ss_pred             hhccCccCCEEECcC
Confidence            122344555555554

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=98.47  E-value=2.9e-08  Score=74.59  Aligned_cols=31  Identities=10%  Similarity=0.155  Sum_probs=13.5

Q ss_pred             ceeeecccccCHHHHHHHHhcCCCCcEEEeeec
Q 037671           34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRS   66 (187)
Q Consensus        34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~   66 (187)
                      +.+++.++.+.  .+...+..+++|+.|++++|
T Consensus       107 ~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n  137 (328)
T 4fcg_A          107 QHMTIDAAGLM--ELPDTMQQFAGLETLTLARN  137 (328)
T ss_dssp             SEEEEESSCCC--CCCSCGGGGTTCSEEEEESC
T ss_pred             CEEECCCCCcc--chhHHHhccCCCCEEECCCC
Confidence            34455554443  12222234455555555544

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.46  E-value=2e-08  Score=71.23  Aligned_cols=131  Identities=15%  Similarity=0.134  Sum_probs=76.6

Q ss_pred             ceeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCC
Q 037671           34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRAS  113 (187)
Q Consensus        34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  113 (187)
                      +.+++.++.++... ...+..+++|+.|++++|    .++......+   ..+++|+.|+++++. ++... ......++
T Consensus        35 ~~L~l~~n~i~~i~-~~~~~~l~~L~~L~Ls~N----~i~~~~~~~~---~~l~~L~~L~Ls~N~-l~~l~-~~~f~~l~  104 (220)
T 2v9t_B           35 TEIRLEQNTIKVIP-PGAFSPYKKLRRIDLSNN----QISELAPDAF---QGLRSLNSLVLYGNK-ITELP-KSLFEGLF  104 (220)
T ss_dssp             CEEECCSSCCCEEC-TTSSTTCTTCCEEECCSS----CCCEECTTTT---TTCSSCCEEECCSSC-CCCCC-TTTTTTCT
T ss_pred             CEEECCCCcCCCcC-HhHhhCCCCCCEEECCCC----cCCCcCHHHh---hCCcCCCEEECCCCc-CCccC-HhHccCCC
Confidence            34555555544211 112345677888888866    3443322222   235788888888765 44221 11234578


Q ss_pred             CCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCC
Q 037671          114 SLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLP  177 (187)
Q Consensus       114 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~  177 (187)
                      +|+.|++++|.++.-.... ...+++|++|+++++ .++..... ....+++|+.|++++|.+.
T Consensus       105 ~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          105 SLQLLLLNANKINCLRVDA-FQDLHNLNLLSLYDN-KLQTIAKG-TFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             TCCEEECCSSCCCCCCTTT-TTTCTTCCEEECCSS-CCSCCCTT-TTTTCTTCCEEECCSSCEE
T ss_pred             CCCEEECCCCCCCEeCHHH-cCCCCCCCEEECCCC-cCCEECHH-HHhCCCCCCEEEeCCCCcC
Confidence            8888888887665421111 234788889999874 55443322 2345788999999988764

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.46  E-value=2.4e-08  Score=80.75  Aligned_cols=132  Identities=19%  Similarity=0.107  Sum_probs=75.0

Q ss_pred             ceeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCC
Q 037671           34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRAS  113 (187)
Q Consensus        34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  113 (187)
                      +.+++++++++.-. ..-+..+++|+.|++++|    .++.-...++   ..+++|++|+++++. ++.-.. ..+..++
T Consensus        55 ~~LdLs~N~i~~l~-~~~f~~l~~L~~L~Ls~N----~i~~i~~~~f---~~L~~L~~L~Ls~N~-l~~l~~-~~f~~L~  124 (635)
T 4g8a_A           55 KNLDLSFNPLRHLG-SYSFFSFPELQVLDLSRC----EIQTIEDGAY---QSLSHLSTLILTGNP-IQSLAL-GAFSGLS  124 (635)
T ss_dssp             CEEECTTSCCCEEC-TTTTTTCTTCCEEECTTC----CCCEECTTTT---TTCTTCCEEECTTCC-CCEECG-GGGTTCT
T ss_pred             CEEEeeCCCCCCCC-HHHHhCCCCCCEEECCCC----cCCCcChhHh---cCCCCCCEEEccCCc-CCCCCH-HHhcCCC
Confidence            34555555544211 112345677888888765    3332111111   235778888888764 443211 1234578


Q ss_pred             CCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCC
Q 037671          114 SLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLP  177 (187)
Q Consensus       114 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~  177 (187)
                      +|++|+++++.++.-.- .....+++|++|+++++ .++...+......+++|++|++++|.++
T Consensus       125 ~L~~L~Ls~N~l~~l~~-~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~l~  186 (635)
T 4g8a_A          125 SLQKLVAVETNLASLEN-FPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKIQ  186 (635)
T ss_dssp             TCCEEECTTSCCCCSTT-CCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             CCCEEECCCCcCCCCCh-hhhhcCcccCeeccccC-ccccCCCchhhccchhhhhhcccCcccc
Confidence            88888888876553110 11245778888888874 5543333333456788899999888764

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.46  E-value=2.8e-08  Score=70.47  Aligned_cols=110  Identities=15%  Similarity=0.122  Sum_probs=74.9

Q ss_pred             CCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHh
Q 037671           56 YSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIAN  135 (187)
Q Consensus        56 ~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~  135 (187)
                      +.++.|++++|    .++.-....+   ..+++|+.|+++++. ++..... ....+++|+.|++++|.++.- ...+..
T Consensus        32 ~~l~~L~l~~n----~i~~i~~~~~---~~l~~L~~L~Ls~N~-i~~~~~~-~~~~l~~L~~L~Ls~N~l~~l-~~~~f~  101 (220)
T 2v9t_B           32 ETITEIRLEQN----TIKVIPPGAF---SPYKKLRRIDLSNNQ-ISELAPD-AFQGLRSLNSLVLYGNKITEL-PKSLFE  101 (220)
T ss_dssp             TTCCEEECCSS----CCCEECTTSS---TTCTTCCEEECCSSC-CCEECTT-TTTTCSSCCEEECCSSCCCCC-CTTTTT
T ss_pred             cCCCEEECCCC----cCCCcCHhHh---hCCCCCCEEECCCCc-CCCcCHH-HhhCCcCCCEEECCCCcCCcc-CHhHcc
Confidence            57999999976    4443222222   336899999999875 5543222 234579999999999877631 112235


Q ss_pred             cCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCC
Q 037671          136 SCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLP  177 (187)
Q Consensus       136 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~  177 (187)
                      .+++|++|+++++ .++...... ...+++|+.|++++|.++
T Consensus       102 ~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~N~l~  141 (220)
T 2v9t_B          102 GLFSLQLLLLNAN-KINCLRVDA-FQDLHNLNLLSLYDNKLQ  141 (220)
T ss_dssp             TCTTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSSCCS
T ss_pred             CCCCCCEEECCCC-CCCEeCHHH-cCCCCCCCEEECCCCcCC
Confidence            6889999999985 665443222 346899999999999775

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.45  E-value=4.5e-08  Score=69.83  Aligned_cols=131  Identities=15%  Similarity=0.107  Sum_probs=78.1

Q ss_pred             eeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCC
Q 037671           35 NLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASS  114 (187)
Q Consensus        35 ~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  114 (187)
                      .+++.++.+... ....+..+++|+.|++++|    .++.-....+   ..+++|+.|+++++. ++...- .....+++
T Consensus        44 ~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~N----~l~~i~~~~~---~~l~~L~~L~Ls~N~-l~~l~~-~~~~~l~~  113 (229)
T 3e6j_A           44 ILYLHDNQITKL-EPGVFDSLINLKELYLGSN----QLGALPVGVF---DSLTQLTVLDLGTNQ-LTVLPS-AVFDRLVH  113 (229)
T ss_dssp             EEECCSSCCCCC-CTTTTTTCTTCCEEECCSS----CCCCCCTTTT---TTCTTCCEEECCSSC-CCCCCT-TTTTTCTT
T ss_pred             EEEcCCCccCcc-CHHHhhCccCCcEEECCCC----CCCCcChhhc---ccCCCcCEEECCCCc-CCccCh-hHhCcchh
Confidence            455555555431 1123345677888888876    3322211111   236788888888764 443211 12245788


Q ss_pred             CCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCCHH
Q 037671          115 LQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPLD  179 (187)
Q Consensus       115 L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~  179 (187)
                      |+.|++++|.++.  +..-...+++|++|+++++ .++.... .....+++|+.|++++|.++.+
T Consensus       114 L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~~~c~  174 (229)
T 3e6j_A          114 LKELFMCCNKLTE--LPRGIERLTHLTHLALDQN-QLKSIPH-GAFDRLSSLTHAYLFGNPWDCE  174 (229)
T ss_dssp             CCEEECCSSCCCS--CCTTGGGCTTCSEEECCSS-CCCCCCT-TTTTTCTTCCEEECTTSCBCTT
T ss_pred             hCeEeccCCcccc--cCcccccCCCCCEEECCCC-cCCccCH-HHHhCCCCCCEEEeeCCCccCC
Confidence            9999998877662  2112256788999999884 5553322 2235678899999999977643

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.45  E-value=5.5e-08  Score=69.38  Aligned_cols=109  Identities=17%  Similarity=0.133  Sum_probs=73.6

Q ss_pred             CCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHh
Q 037671           56 YSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIAN  135 (187)
Q Consensus        56 ~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~  135 (187)
                      ++|+.|++++|    .++......+   ..+++|+.|+++++. ++.... .....+++|+.|++++|.++.-. .....
T Consensus        40 ~~L~~L~Ls~n----~i~~~~~~~~---~~l~~L~~L~L~~N~-l~~i~~-~~~~~l~~L~~L~Ls~N~l~~l~-~~~~~  109 (229)
T 3e6j_A           40 TNAQILYLHDN----QITKLEPGVF---DSLINLKELYLGSNQ-LGALPV-GVFDSLTQLTVLDLGTNQLTVLP-SAVFD  109 (229)
T ss_dssp             TTCSEEECCSS----CCCCCCTTTT---TTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSSCCCCCC-TTTTT
T ss_pred             CCCCEEEcCCC----ccCccCHHHh---hCccCCcEEECCCCC-CCCcCh-hhcccCCCcCEEECCCCcCCccC-hhHhC
Confidence            77999999976    4444322222   336899999998775 533211 12345899999999998776321 12234


Q ss_pred             cCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCC
Q 037671          136 SCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLP  177 (187)
Q Consensus       136 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~  177 (187)
                      .+++|++|+++++ .++.-.  .-...+++|+.|++++|.++
T Consensus       110 ~l~~L~~L~Ls~N-~l~~lp--~~~~~l~~L~~L~L~~N~l~  148 (229)
T 3e6j_A          110 RLVHLKELFMCCN-KLTELP--RGIERLTHLTHLALDQNQLK  148 (229)
T ss_dssp             TCTTCCEEECCSS-CCCSCC--TTGGGCTTCSEEECCSSCCC
T ss_pred             cchhhCeEeccCC-cccccC--cccccCCCCCEEECCCCcCC
Confidence            6889999999985 665221  22357899999999999775

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.45  E-value=2.7e-08  Score=76.30  Aligned_cols=132  Identities=13%  Similarity=0.098  Sum_probs=76.0

Q ss_pred             eeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCC
Q 037671           35 NLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASS  114 (187)
Q Consensus        35 ~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  114 (187)
                      .+.+.++.++... ..++..+++|+.|+++++    .+++.....+   ..+++|++|+++++. ++.... .....+++
T Consensus        49 ~l~l~~~~l~~l~-~~~~~~l~~L~~L~L~~n----~i~~~~~~~~---~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~  118 (390)
T 3o6n_A           49 IVTFKNSTMRKLP-AALLDSFRQVELLNLNDL----QIEEIDTYAF---AYAHTIQKLYMGFNA-IRYLPP-HVFQNVPL  118 (390)
T ss_dssp             EEEEESCEESEEC-THHHHHCCCCSEEECTTS----CCCEECTTTT---TTCTTCCEEECCSSC-CCCCCT-TTTTTCTT
T ss_pred             EEEecCCchhhCC-hhHhcccccCcEEECCCC----cccccChhhc---cCCCCcCEEECCCCC-CCcCCH-HHhcCCCC
Confidence            4555555443221 234456788999999865    4444332222   236788888887765 443221 12245778


Q ss_pred             CCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCCHH
Q 037671          115 LQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPLD  179 (187)
Q Consensus       115 L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~  179 (187)
                      |+.|+++++.++.- ...+...+++|++|+++++ .++..... ....+++|++|++++|.++..
T Consensus       119 L~~L~L~~n~l~~l-~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~  180 (390)
T 3o6n_A          119 LTVLVLERNDLSSL-PRGIFHNTPKLTTLSMSNN-NLERIEDD-TFQATTSLQNLQLSSNRLTHV  180 (390)
T ss_dssp             CCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSS-CCCBCCTT-TTSSCTTCCEEECCSSCCSBC
T ss_pred             CCEEECCCCccCcC-CHHHhcCCCCCcEEECCCC-ccCccChh-hccCCCCCCEEECCCCcCCcc
Confidence            88888888766521 1112245777888888774 44432211 124567788888888876643

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.45  E-value=2.8e-08  Score=75.27  Aligned_cols=132  Identities=14%  Similarity=0.067  Sum_probs=64.8

Q ss_pred             eeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCC
Q 037671           35 NLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASS  114 (187)
Q Consensus        35 ~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  114 (187)
                      .+++.++.++... ...+..+++|+.|++++|    .++......+   ..+++|++|+++++. ++.... .....+++
T Consensus        56 ~L~l~~n~i~~~~-~~~~~~l~~L~~L~L~~n----~l~~~~~~~~---~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~  125 (353)
T 2z80_A           56 SLDLSNNRITYIS-NSDLQRCVNLQALVLTSN----GINTIEEDSF---SSLGSLEHLDLSYNY-LSNLSS-SWFKPLSS  125 (353)
T ss_dssp             EEECTTSCCCEEC-TTTTTTCTTCCEEECTTS----CCCEECTTTT---TTCTTCCEEECCSSC-CSSCCH-HHHTTCTT
T ss_pred             EEECCCCcCcccC-HHHhccCCCCCEEECCCC----ccCccCHhhc---CCCCCCCEEECCCCc-CCcCCH-hHhCCCcc
Confidence            3455555444211 112345667777777754    3333222222   235777777777664 443222 22344677


Q ss_pred             CCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCC
Q 037671          115 LQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLP  177 (187)
Q Consensus       115 L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~  177 (187)
                      |++|+++++.++.-........+++|++|++++|..++...... ...+++|++|++++|.++
T Consensus       126 L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~l~~L~~L~l~~n~l~  187 (353)
T 2z80_A          126 LTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKD-FAGLTFLEELEIDASDLQ  187 (353)
T ss_dssp             CSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTT-TTTCCEEEEEEEEETTCC
T ss_pred             CCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHH-ccCCCCCCEEECCCCCcC
Confidence            77777777655521000122346677777776653333221111 123455555555555443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.44  E-value=4.5e-08  Score=78.60  Aligned_cols=133  Identities=10%  Similarity=0.111  Sum_probs=84.1

Q ss_pred             ceeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCC
Q 037671           34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRAS  113 (187)
Q Consensus        34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  113 (187)
                      +.+++.++.++.  ++.  ...++++.|++++|    .++.-....+   ..+++|++|+++++. ++..... ....++
T Consensus        34 ~~l~ls~~~L~~--ip~--~~~~~L~~L~Ls~N----~i~~~~~~~~---~~l~~L~~L~Ls~N~-l~~~~~~-~~~~l~  100 (562)
T 3a79_B           34 SMVDYSNRNLTH--VPK--DLPPRTKALSLSQN----SISELRMPDI---SFLSELRVLRLSHNR-IRSLDFH-VFLFNQ  100 (562)
T ss_dssp             CEEECTTSCCCS--CCT--TSCTTCCEEECCSS----CCCCCCGGGT---TTCTTCCEEECCSCC-CCEECTT-TTTTCT
T ss_pred             cEEEcCCCCCcc--CCC--CCCCCcCEEECCCC----CccccChhhh---ccCCCccEEECCCCC-CCcCCHH-HhCCCC
Confidence            457777776653  111  12378999999976    4443332222   346889999998775 5543222 224578


Q ss_pred             CCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHhh
Q 037671          114 SLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPLDCFIGL  184 (187)
Q Consensus       114 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~L  184 (187)
                      +|++|++++|.++.  +...  .+++|++|+++++ .++...+......+++|++|++++|.++..++..+
T Consensus       101 ~L~~L~Ls~N~l~~--lp~~--~l~~L~~L~Ls~N-~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l  166 (562)
T 3a79_B          101 DLEYLDVSHNRLQN--ISCC--PMASLRHLDLSFN-DFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPV  166 (562)
T ss_dssp             TCCEEECTTSCCCE--ECSC--CCTTCSEEECCSS-CCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGG
T ss_pred             CCCEEECCCCcCCc--cCcc--ccccCCEEECCCC-CccccCchHhhcccCcccEEecCCCccccCchhhh
Confidence            89999999977762  2111  5888999999885 55442221223468889999999998876555443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.43  E-value=5.2e-07  Score=70.80  Aligned_cols=38  Identities=11%  Similarity=0.251  Sum_probs=17.5

Q ss_pred             cCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCC
Q 037671          136 SCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLP  177 (187)
Q Consensus       136 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~  177 (187)
                      .+++|+.|++++| .+++...   ...+++|+.|++++|.++
T Consensus       307 ~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~l~~n~l~  344 (466)
T 1o6v_A          307 NLKNLTYLTLYFN-NISDISP---VSSLTKLQRLFFYNNKVS  344 (466)
T ss_dssp             GCTTCSEEECCSS-CCSCCGG---GGGCTTCCEEECCSSCCC
T ss_pred             CCCCCCEEECcCC-cCCCchh---hccCccCCEeECCCCccC
Confidence            3455555555543 2322211   234555555555555444

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.41  E-value=7.6e-08  Score=71.87  Aligned_cols=61  Identities=13%  Similarity=0.081  Sum_probs=28.8

Q ss_pred             CCCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCC
Q 037671          112 ASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLP  177 (187)
Q Consensus       112 ~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~  177 (187)
                      +++|+.|++++|.++.-.. . ...+++|++|+++++ .++.-  ......+++|+.|++++|.++
T Consensus       190 l~~L~~L~Ls~N~l~~l~~-~-~~~l~~L~~L~L~~N-~l~~l--~~~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          190 FAKLKTLDLSSNKLAFMGP-E-FQSAAGVTWISLRNN-KLVLI--EKALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             CTTCCEEECCSSCCCEECG-G-GGGGTTCSEEECTTS-CCCEE--CTTCCCCTTCCEEECTTCCCB
T ss_pred             cccCCEEECCCCcCCcchh-h-hcccCcccEEECcCC-cccch--hhHhhcCCCCCEEEccCCCcc
Confidence            4455555555544432100 0 223455666666553 33321  111234566777777777666

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.41  E-value=2.6e-08  Score=80.54  Aligned_cols=13  Identities=15%  Similarity=0.161  Sum_probs=7.3

Q ss_pred             cCCCCcEEEeeec
Q 037671           54 YAYSLKELEISRS   66 (187)
Q Consensus        54 ~~~~L~~L~l~~~   66 (187)
                      .+++|+.|++++|
T Consensus       398 ~l~~L~~L~l~~n  410 (606)
T 3t6q_A          398 ECPQLELLDLAFT  410 (606)
T ss_dssp             TCTTCSEEECTTC
T ss_pred             CCccCCeEECCCC
Confidence            4455666666544

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.41  E-value=2.7e-08  Score=80.46  Aligned_cols=133  Identities=15%  Similarity=0.059  Sum_probs=80.0

Q ss_pred             ceeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCC
Q 037671           34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRAS  113 (187)
Q Consensus        34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  113 (187)
                      +.+++.++.++... ...+..+++|++|++++|    .++.-....+   ..+++|++|+++++. ++..... ....++
T Consensus        35 ~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n----~l~~i~~~~~---~~l~~L~~L~Ls~n~-l~~~~p~-~~~~l~  104 (606)
T 3vq2_A           35 KNIDLSFNPLKILK-SYSFSNFSELQWLDLSRC----EIETIEDKAW---HGLHHLSNLILTGNP-IQSFSPG-SFSGLT  104 (606)
T ss_dssp             CEEECTTSCCCEEC-TTTTTTCTTCCEEECTTC----CCCEECTTTT---TTCTTCCEEECTTCC-CCCCCTT-SSTTCT
T ss_pred             CEEECCCCCcCEeC-hhhccCCccCcEEeCCCC----cccccCHHHh---hchhhcCEeECCCCc-ccccChh-hcCCcc
Confidence            45666666554321 113346788888888865    4443322222   346888999998775 4432111 224578


Q ss_pred             CCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCCH
Q 037671          114 SLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPL  178 (187)
Q Consensus       114 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~  178 (187)
                      +|++|+++++.++.-.... ...+++|++|++++| .++...+......+++|++|++++|.++.
T Consensus       105 ~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~  167 (606)
T 3vq2_A          105 SLENLVAVETKLASLESFP-IGQLITLKKLNVAHN-FIHSCKLPAYFSNLTNLVHVDLSYNYIQT  167 (606)
T ss_dssp             TCCEEECTTSCCCCSSSSC-CTTCTTCCEEECCSS-CCCCCCCCGGGGTCTTCCEEECCSSCCCE
T ss_pred             cCCEEEccCCccccccccc-cCCCCCCCEEeCCCC-cccceechHhHhhcCCCCEEEccCCccee
Confidence            8899998887665321111 345788899999885 44432222234568889999998887753

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.40  E-value=4.3e-08  Score=76.47  Aligned_cols=65  Identities=20%  Similarity=0.202  Sum_probs=33.1

Q ss_pred             hcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCC
Q 037671           53 GYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFIT  126 (187)
Q Consensus        53 ~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  126 (187)
                      ..+++|+.|++++|    .++.-....+   ..+++|+.|+++++. ++...- .....+++|+.|++++|.++
T Consensus        85 ~~l~~L~~L~Ls~n----~i~~i~~~~~---~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~L~~N~i~  149 (440)
T 3zyj_A           85 KHLRHLEILQLSRN----HIRTIEIGAF---NGLANLNTLELFDNR-LTTIPN-GAFVYLSKLKELWLRNNPIE  149 (440)
T ss_dssp             SSCSSCCEEECCSS----CCCEECGGGG---TTCSSCCEEECCSSC-CSSCCT-TTSCSCSSCCEEECCSCCCC
T ss_pred             hCCCCCCEEECCCC----cCCccChhhc---cCCccCCEEECCCCc-CCeeCH-hHhhccccCceeeCCCCccc
Confidence            45667777777765    3333222222   235667777776553 332111 11233566666666665544

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.39  E-value=3.7e-08  Score=78.91  Aligned_cols=133  Identities=19%  Similarity=0.122  Sum_probs=79.4

Q ss_pred             ceeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCC
Q 037671           34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRAS  113 (187)
Q Consensus        34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  113 (187)
                      +.+++.++.++.... ..+..+++|++|++++|    .++.-....+   ..+++|++|+++++. ++..... ....++
T Consensus        31 ~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n----~i~~i~~~~~---~~l~~L~~L~L~~n~-l~~~~~~-~~~~l~  100 (570)
T 2z63_A           31 KNLDLSFNPLRHLGS-YSFFSFPELQVLDLSRC----EIQTIEDGAY---QSLSHLSTLILTGNP-IQSLALG-AFSGLS  100 (570)
T ss_dssp             CEEECCSCCCCEECT-TTTTTCSSCCEEECTTC----CCCEECTTTT---TTCTTCCEEECTTCC-CCEECTT-TTTTCT
T ss_pred             cEEEccCCccCccCh-hHhhCCCCceEEECCCC----cCCccCcccc---cCchhCCEEeCcCCc-CCccCHh-hhcCcc
Confidence            456666665543211 12346788999999865    4443322222   346889999998775 4432211 224578


Q ss_pred             CCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCCH
Q 037671          114 SLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPL  178 (187)
Q Consensus       114 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~  178 (187)
                      +|++|+++++.++.-.... ...+++|++|+++++ .++...+......+++|++|++++|.++.
T Consensus       101 ~L~~L~L~~n~l~~l~~~~-~~~l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L~l~~n~l~~  163 (570)
T 2z63_A          101 SLQKLVAVETNLASLENFP-IGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKIQS  163 (570)
T ss_dssp             TCCEEECTTSCCCCSTTCS-CTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECTTSCCCE
T ss_pred             ccccccccccccccCCCcc-ccccccccEEecCCC-ccceecChhhhcccCCCCEEeCcCCccce
Confidence            8888888886655321111 245788888988875 44432211223468888899888887653

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.39  E-value=7.6e-08  Score=67.45  Aligned_cols=111  Identities=15%  Similarity=0.172  Sum_probs=74.6

Q ss_pred             CCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHH
Q 037671           55 AYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIA  134 (187)
Q Consensus        55 ~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~  134 (187)
                      .++++.|+++++    .++......+   ..+++|++|+++++. ++... ......+++|++|+++++.++.-. ....
T Consensus        27 ~~~l~~L~l~~n----~l~~~~~~~~---~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~   96 (208)
T 2o6s_A           27 PAQTTYLDLETN----SLKSLPNGVF---DELTSLTQLYLGGNK-LQSLP-NGVFNKLTSLTYLNLSTNQLQSLP-NGVF   96 (208)
T ss_dssp             CTTCSEEECCSS----CCCCCCTTTT---TTCTTCSEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSSCCCCCC-TTTT
T ss_pred             CCCCcEEEcCCC----ccCcCChhhh---cccccCcEEECCCCc-cCccC-hhhcCCCCCcCEEECCCCcCCccC-HhHh
Confidence            457999999976    4443222222   347899999998775 54321 122345899999999998776311 1223


Q ss_pred             hcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCC
Q 037671          135 NSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLP  177 (187)
Q Consensus       135 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~  177 (187)
                      ..+++|++|+++++ .++...- .....+++|++|++++|.++
T Consensus        97 ~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~l~  137 (208)
T 2o6s_A           97 DKLTQLKELALNTN-QLQSLPD-GVFDKLTQLKDLRLYQNQLK  137 (208)
T ss_dssp             TTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSCCS
T ss_pred             cCccCCCEEEcCCC-cCcccCH-hHhccCCcCCEEECCCCccc
Confidence            46889999999985 5653321 22356899999999999775

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.39  E-value=4.1e-08  Score=78.39  Aligned_cols=134  Identities=13%  Similarity=0.067  Sum_probs=80.5

Q ss_pred             ceeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCC
Q 037671           34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRAS  113 (187)
Q Consensus        34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  113 (187)
                      +.+++.++.++... ...+..+++|+.|++++|    .++......+   ..+++|++|+++++. ++......+ ..++
T Consensus        29 ~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n----~i~~~~~~~~---~~l~~L~~L~Ls~n~-l~~~~~~~~-~~l~   98 (549)
T 2z81_A           29 KSLDLSFNKITYIG-HGDLRACANLQVLILKSS----RINTIEGDAF---YSLGSLEHLDLSDNH-LSSLSSSWF-GPLS   98 (549)
T ss_dssp             CEEECCSSCCCEEC-SSTTSSCTTCCEEECTTS----CCCEECTTTT---TTCTTCCEEECTTSC-CCSCCHHHH-TTCT
T ss_pred             cEEECcCCccCccC-hhhhhcCCcccEEECCCC----CcCccChhhc---cccccCCEEECCCCc-cCccCHHHh-ccCC
Confidence            45666666654321 112356788899998865    4443332222   236889999998775 554333223 4588


Q ss_pred             CCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCCH
Q 037671          114 SLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPL  178 (187)
Q Consensus       114 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~  178 (187)
                      +|++|+++++.++..........+++|++|++++|..++...... ...+++|++|++++|.++.
T Consensus        99 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~-~~~l~~L~~L~L~~n~l~~  162 (549)
T 2z81_A           99 SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRID-FAGLTSLNELEIKALSLRN  162 (549)
T ss_dssp             TCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTT-TTTCCEEEEEEEEETTCCE
T ss_pred             CCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhh-hhcccccCeeeccCCcccc
Confidence            899999988776532111223457788888888764343322112 2457788888888876653

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.39  E-value=7.2e-06  Score=65.38  Aligned_cols=67  Identities=16%  Similarity=0.232  Sum_probs=41.2

Q ss_pred             hcCCCCCEEEecCCCCCHHHHHHH--HhcCCccceeeccCCCCCcHHH-HHHHHhcCCCCcEEEeeCCCCC
Q 037671          110 SRASSLQHLNIGGTFITDESLYAI--ANSCPQLKSIVLWSCRQVTGNG-LLFLVNKCGRLESINVWGTRLP  177 (187)
Q Consensus       110 ~~~~~L~~L~l~~~~~~~~~~~~l--~~~~~~L~~L~l~~~~~~~~~~-~~~l~~~~~~L~~L~l~~~~i~  177 (187)
                      ..+++|+.|+++++.+++......  ...++.|++|++++| .++... .......+++|++|++++|.++
T Consensus       331 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~  400 (549)
T 2z81_A          331 QHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRNTFH  400 (549)
T ss_dssp             HHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred             hcCccccEEEccCCccccccccchhhhhccccCcEEEccCC-cccccccchhhhhcCCCCCEEECCCCCCc
Confidence            357778888888777776543321  234677778888775 444322 1233455777777777777654

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.38  E-value=8.7e-08  Score=65.45  Aligned_cols=112  Identities=15%  Similarity=0.105  Sum_probs=74.5

Q ss_pred             CCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHH
Q 037671           55 AYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIA  134 (187)
Q Consensus        55 ~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~  134 (187)
                      .++++.|++++|    .++......+   ..+++|+.|+++++. ++...- .....+++|+.|+++++.++.-. ....
T Consensus        27 ~~~l~~L~l~~n----~l~~~~~~~~---~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~-~~~~   96 (177)
T 2o6r_A           27 PSSATRLELESN----KLQSLPHGVF---DKLTQLTKLSLSQNQ-IQSLPD-GVFDKLTKLTILYLHENKLQSLP-NGVF   96 (177)
T ss_dssp             CTTCSEEECCSS----CCCCCCTTTT---TTCTTCSEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSSCCCCCC-TTTT
T ss_pred             CCCCcEEEeCCC----cccEeCHHHh---cCcccccEEECCCCc-ceEeCh-hHccCCCccCEEECCCCCccccC-HHHh
Confidence            468999999976    3443222222   336899999998775 543211 12345889999999998776321 1123


Q ss_pred             hcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCCH
Q 037671          135 NSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPL  178 (187)
Q Consensus       135 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~  178 (187)
                      ..++.|++|+++++ .++... ......+++|++|++++|.++.
T Consensus        97 ~~l~~L~~L~l~~N-~l~~~~-~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           97 DKLTQLKELALDTN-QLKSVP-DGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             TTCTTCCEEECCSS-CCSCCC-TTTTTTCTTCCEEECCSSCBCC
T ss_pred             hCCcccCEEECcCC-cceEeC-HHHhcCCcccCEEEecCCCeec
Confidence            45789999999985 665332 2233568999999999998763

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.37  E-value=4.3e-08  Score=76.68  Aligned_cols=87  Identities=17%  Similarity=0.140  Sum_probs=39.5

Q ss_pred             hcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHH
Q 037671           53 GYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYA  132 (187)
Q Consensus        53 ~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  132 (187)
                      ..+++|+.|++++|    .++......+   ..+++|+.|+++++. ++.... .....+++|+.|++++|.++.-.. .
T Consensus        96 ~~l~~L~~L~Ls~n----~i~~~~~~~~---~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~-~  165 (452)
T 3zyi_A           96 RHLHHLEVLQLGRN----SIRQIEVGAF---NGLASLNTLELFDNW-LTVIPS-GAFEYLSKLRELWLRNNPIESIPS-Y  165 (452)
T ss_dssp             TTCTTCCEEECCSS----CCCEECTTTT---TTCTTCCEEECCSSC-CSBCCT-TTSSSCTTCCEEECCSCCCCEECT-T
T ss_pred             CCCCCCCEEECCCC----ccCCcChhhc---cCcccCCEEECCCCc-CCccCh-hhhcccCCCCEEECCCCCcceeCH-h
Confidence            34566777777654    3332222222   225666666666553 332111 112235666666666655442100 1


Q ss_pred             HHhcCCccceeeccCCC
Q 037671          133 IANSCPQLKSIVLWSCR  149 (187)
Q Consensus       133 l~~~~~~L~~L~l~~~~  149 (187)
                      ....+++|++|++++|+
T Consensus       166 ~~~~l~~L~~L~l~~~~  182 (452)
T 3zyi_A          166 AFNRVPSLMRLDLGELK  182 (452)
T ss_dssp             TTTTCTTCCEEECCCCT
T ss_pred             HHhcCCcccEEeCCCCC
Confidence            12234445555554433

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.36  E-value=2.3e-07  Score=70.23  Aligned_cols=43  Identities=12%  Similarity=0.020  Sum_probs=26.1

Q ss_pred             hcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCCHH
Q 037671          135 NSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPLD  179 (187)
Q Consensus       135 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~  179 (187)
                      ..+++|++|+++++ .++.-. ..+...+++|++|++++|+++.+
T Consensus       274 ~~l~~L~~L~Ls~N-~l~~i~-~~~~~~l~~L~~L~L~~N~~~~~  316 (353)
T 2z80_A          274 NQISGLLELEFSRN-QLKSVP-DGIFDRLTSLQKIWLHTNPWDCS  316 (353)
T ss_dssp             HTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSCBCCC
T ss_pred             hcccCCCEEECCCC-CCCccC-HHHHhcCCCCCEEEeeCCCccCc
Confidence            45677777777774 444222 12224567788888888766543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.35  E-value=6.6e-08  Score=78.26  Aligned_cols=116  Identities=12%  Similarity=0.096  Sum_probs=68.3

Q ss_pred             HHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHH
Q 037671           51 LVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESL  130 (187)
Q Consensus        51 ~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  130 (187)
                      ++..+++|+.|++++|    .++......+   ..+++|+.|+++++. ++.... ..+..+++|+.|+++++.++.- .
T Consensus        70 ~~~~l~~L~~L~L~~n----~l~~~~~~~~---~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~L~~n~l~~l-~  139 (597)
T 3oja_B           70 LLDSFRQVELLNLNDL----QIEEIDTYAF---AYAHTIQKLYMGFNA-IRYLPP-HVFQNVPLLTVLVLERNDLSSL-P  139 (597)
T ss_dssp             HHHHCCCCSEEECTTS----CCCEECTTTT---TTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSSCCCCC-C
T ss_pred             HHccCCCCcEEECCCC----CCCCCChHHh---cCCCCCCEEECCCCc-CCCCCH-HHHcCCCCCCEEEeeCCCCCCC-C
Confidence            4556788888888865    4443322222   236778888887765 443221 1224577888888888666521 1


Q ss_pred             HHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCCH
Q 037671          131 YAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPL  178 (187)
Q Consensus       131 ~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~  178 (187)
                      ..+...+++|++|++++| .++...... ...+++|+.|++++|.++.
T Consensus       140 ~~~~~~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~L~~N~l~~  185 (597)
T 3oja_B          140 RGIFHNTPKLTTLSMSNN-NLERIEDDT-FQATTSLQNLQLSSNRLTH  185 (597)
T ss_dssp             TTTTTTCTTCCEEECCSS-CCCBCCTTT-TTTCTTCCEEECTTSCCSB
T ss_pred             HHHhccCCCCCEEEeeCC-cCCCCChhh-hhcCCcCcEEECcCCCCCC
Confidence            112245677888888775 444322111 2356778888888776654

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.35  E-value=3.4e-08  Score=79.79  Aligned_cols=131  Identities=16%  Similarity=0.081  Sum_probs=70.1

Q ss_pred             ceeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCC
Q 037671           34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRAS  113 (187)
Q Consensus        34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  113 (187)
                      +.+++.++.++... ...+..+++|+.|++++|    .++......+   ..+++|++|+++++. ++..... ....++
T Consensus        36 ~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~n----~i~~~~~~~~---~~l~~L~~L~Ls~n~-l~~~~~~-~~~~l~  105 (606)
T 3t6q_A           36 ECLEFSFNVLPTIQ-NTTFSRLINLTFLDLTRC----QIYWIHEDTF---QSQHRLDTLVLTANP-LIFMAET-ALSGPK  105 (606)
T ss_dssp             CEEECTTCCCSEEC-TTTSTTCTTCSEEECTTC----CCCEECTTTT---TTCTTCCEEECTTCC-CSEECTT-TTSSCT
T ss_pred             cEEEccCCccCcCC-hhHhccCccceEEECCCC----ccceeChhhc---cCccccCeeeCCCCc-ccccChh-hhcccc
Confidence            45566666554321 223345677888888765    3443322222   236777777777664 4322111 123467


Q ss_pred             CCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCC
Q 037671          114 SLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLP  177 (187)
Q Consensus       114 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~  177 (187)
                      +|++|+++++.++.-.... ...+++|++|++++| .++......+. .+++|++|++++|.++
T Consensus       106 ~L~~L~L~~n~i~~l~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~~-~l~~L~~L~L~~n~l~  166 (606)
T 3t6q_A          106 ALKHLFFIQTGISSIDFIP-LHNQKTLESLYLGSN-HISSIKLPKGF-PTEKLKVLDFQNNAIH  166 (606)
T ss_dssp             TCCEEECTTSCCSCGGGSC-CTTCTTCCEEECCSS-CCCCCCCCTTC-CCTTCCEEECCSSCCC
T ss_pred             cccEeeccccCcccCCcch-hccCCcccEEECCCC-cccccCccccc-CCcccCEEEcccCccc
Confidence            7777777776655421111 234667777777764 44432222222 2667777777777654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.35  E-value=5e-08  Score=67.95  Aligned_cols=128  Identities=15%  Similarity=0.171  Sum_probs=84.4

Q ss_pred             ceeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCC
Q 037671           34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRAS  113 (187)
Q Consensus        34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  113 (187)
                      +.+++.++.++.  +. ....+++|+.|++++|    .+++-. ..   ...+++|+.|+++++. ++.  +.. ...++
T Consensus        51 ~~L~ls~n~l~~--l~-~~~~l~~L~~L~l~~n----~l~~l~-~~---~~~~~~L~~L~L~~N~-l~~--l~~-~~~l~  115 (198)
T 1ds9_A           51 KHLALSTNNIEK--IS-SLSGMENLRILSLGRN----LIKKIE-NL---DAVADTLEELWISYNQ-IAS--LSG-IEKLV  115 (198)
T ss_dssp             SEEECSEEEESC--CC-CHHHHTTCCEEEEEEE----EECSCS-SH---HHHHHHCSEEEEEEEE-CCC--HHH-HHHHH
T ss_pred             CEEECCCCCCcc--cc-ccccCCCCCEEECCCC----Cccccc-ch---hhcCCcCCEEECcCCc-CCc--CCc-cccCC
Confidence            456666666554  22 3456789999999987    444211 11   1225789999999875 655  233 34579


Q ss_pred             CCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHH---------HHHHHHhcCCCCcEEEeeCCCCCHH
Q 037671          114 SLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGN---------GLLFLVNKCGRLESINVWGTRLPLD  179 (187)
Q Consensus       114 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~---------~~~~l~~~~~~L~~L~l~~~~i~~~  179 (187)
                      +|+.|++++|.+++-........+++|++|+++++ .++..         ....+...+|+|+.||  ++.++++
T Consensus       116 ~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~~  187 (198)
T 1ds9_A          116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN-PLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDVD  187 (198)
T ss_dssp             HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSC-HHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTTT
T ss_pred             CCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCC-ccccccccccchHHHHHHHHHhCCCcEEEC--CcccCHH
Confidence            99999999988886332223446899999999985 44332         1233456799999998  6666543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.34  E-value=9.7e-08  Score=69.66  Aligned_cols=131  Identities=14%  Similarity=0.128  Sum_probs=83.6

Q ss_pred             ceeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCC
Q 037671           34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRAS  113 (187)
Q Consensus        34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  113 (187)
                      +.+++.++.++.. ....+..+++|+.|++++|    .++.-....+   ..+++|++|+++++. ++.... .....++
T Consensus        64 ~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l~~n----~l~~~~~~~~---~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~  133 (270)
T 2o6q_A           64 RLLYLNDNKLQTL-PAGIFKELKNLETLWVTDN----KLQALPIGVF---DQLVNLAELRLDRNQ-LKSLPP-RVFDSLT  133 (270)
T ss_dssp             CEEECCSSCCSCC-CTTTTSSCTTCCEEECCSS----CCCCCCTTTT---TTCSSCCEEECCSSC-CCCCCT-TTTTTCT
T ss_pred             CEEECCCCccCee-ChhhhcCCCCCCEEECCCC----cCCcCCHhHc---ccccCCCEEECCCCc-cCeeCH-HHhCcCc
Confidence            4455555554421 1223456789999999976    4443322222   346899999998775 443221 1224589


Q ss_pred             CCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCC
Q 037671          114 SLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLP  177 (187)
Q Consensus       114 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~  177 (187)
                      +|+.|+++++.++.-.. .....++.|++|+++++ .++...... ...+++|++|++++|.++
T Consensus       134 ~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~N~l~  194 (270)
T 2o6q_A          134 KLTYLSLGYNELQSLPK-GVFDKLTSLKELRLYNN-QLKRVPEGA-FDKLTELKTLKLDNNQLK  194 (270)
T ss_dssp             TCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSS-CCSCCCTTT-TTTCTTCCEEECCSSCCS
T ss_pred             CCCEEECCCCcCCccCH-hHccCCcccceeEecCC-cCcEeChhH-hccCCCcCEEECCCCcCC
Confidence            99999999987663211 12345889999999985 555433222 346899999999999775

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.34  E-value=9.7e-08  Score=71.31  Aligned_cols=110  Identities=20%  Similarity=0.183  Sum_probs=74.8

Q ss_pred             cCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHH
Q 037671           54 YAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAI  133 (187)
Q Consensus        54 ~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l  133 (187)
                      .+++|+.|++++|    .++......+   ..+++|+.|+++++. ++......+...+++|+.|+++++.++..  ...
T Consensus       118 ~~~~L~~L~l~~N----~l~~~~~~~~---~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~  187 (317)
T 3o53_A          118 RGQGKKNIYLANN----KITMLRDLDE---GCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNFIYDV--KGQ  187 (317)
T ss_dssp             CCSSCEEEECCSS----CCCSGGGBCT---GGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSCCCEE--ECC
T ss_pred             ccCCCCEEECCCC----CCCCccchhh---hccCCCCEEECCCCC-CCcccHHHHhhccCcCCEEECCCCcCccc--ccc
Confidence            3577999999876    4444322222   235889999998875 66655555555678999999999877643  111


Q ss_pred             HhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCC
Q 037671          134 ANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLP  177 (187)
Q Consensus       134 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~  177 (187)
                       ..+++|++|++++| .++.....  ...+++|+.|++++|.++
T Consensus       188 -~~l~~L~~L~Ls~N-~l~~l~~~--~~~l~~L~~L~L~~N~l~  227 (317)
T 3o53_A          188 -VVFAKLKTLDLSSN-KLAFMGPE--FQSAAGVTWISLRNNKLV  227 (317)
T ss_dssp             -CCCTTCCEEECCSS-CCCEECGG--GGGGTTCSEEECTTSCCC
T ss_pred             -cccccCCEEECCCC-cCCcchhh--hcccCcccEEECcCCccc
Confidence             23788999999885 55543222  346789999999999776

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.33  E-value=2e-08  Score=74.47  Aligned_cols=134  Identities=13%  Similarity=0.071  Sum_probs=87.3

Q ss_pred             eeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCC
Q 037671           35 NLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASS  114 (187)
Q Consensus        35 ~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  114 (187)
                      .+++.++.++..........+++|+.|++++|    .++......+   ..+++|+.|+++++. ++..........+++
T Consensus       105 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n----~l~~~~~~~~---~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~  176 (306)
T 2z66_A          105 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT----HTRVAFNGIF---NGLSSLEVLKMAGNS-FQENFLPDIFTELRN  176 (306)
T ss_dssp             EEECTTSEEESSTTTTTTTTCTTCCEEECTTS----CCEECSTTTT---TTCTTCCEEECTTCE-EGGGEECSCCTTCTT
T ss_pred             EEECCCCcccccccchhhhhccCCCEEECCCC----cCCccchhhc---ccCcCCCEEECCCCc-cccccchhHHhhCcC
Confidence            44555554433222224456789999999976    4443332222   346899999999875 554323333456899


Q ss_pred             CCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCCHH
Q 037671          115 LQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPLD  179 (187)
Q Consensus       115 L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~  179 (187)
                      |+.|+++++.++...... ...+++|++|+++++ .+++..... ...+++|+.|++++|.++..
T Consensus       177 L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~  238 (306)
T 2z66_A          177 LTFLDLSQCQLEQLSPTA-FNSLSSLQVLNMSHN-NFFSLDTFP-YKCLNSLQVLDYSLNHIMTS  238 (306)
T ss_dssp             CCEEECTTSCCCEECTTT-TTTCTTCCEEECTTS-CCSBCCSGG-GTTCTTCCEEECTTSCCCBC
T ss_pred             CCEEECCCCCcCCcCHHH-hcCCCCCCEEECCCC-ccCccChhh-ccCcccCCEeECCCCCCccc
Confidence            999999998776532222 245789999999985 554433222 35689999999999988654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.31  E-value=1.8e-07  Score=73.95  Aligned_cols=17  Identities=18%  Similarity=0.245  Sum_probs=9.9

Q ss_pred             cCCCCcEEEeeCCCCCH
Q 037671          162 KCGRLESINVWGTRLPL  178 (187)
Q Consensus       162 ~~~~L~~L~l~~~~i~~  178 (187)
                      .+++|+.|++++|.++.
T Consensus       235 ~l~~L~~L~l~~N~l~c  251 (487)
T 3oja_A          235 FSQNLEHFDLRGNGFHC  251 (487)
T ss_dssp             CCTTCCEEECTTCCBCH
T ss_pred             cCCCCCEEEcCCCCCcC
Confidence            34566666666666653

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.31  E-value=1.3e-07  Score=70.80  Aligned_cols=64  Identities=9%  Similarity=0.066  Sum_probs=36.4

Q ss_pred             cCCCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCCH
Q 037671          111 RASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPL  178 (187)
Q Consensus       111 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~  178 (187)
                      .+++|+.|+++++.++...... ...++.|++|++++| .++.-  ......+++|++|++++|.++.
T Consensus       214 ~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~l--p~~l~~l~~L~~L~l~~N~i~~  277 (330)
T 1xku_A          214 GLNNLAKLGLSFNSISAVDNGS-LANTPHLRELHLNNN-KLVKV--PGGLADHKYIQVVYLHNNNISA  277 (330)
T ss_dssp             TCTTCCEEECCSSCCCEECTTT-GGGSTTCCEEECCSS-CCSSC--CTTTTTCSSCCEEECCSSCCCC
T ss_pred             CCCCCCEEECCCCcCceeChhh-ccCCCCCCEEECCCC-cCccC--ChhhccCCCcCEEECCCCcCCc
Confidence            4567777777776555321111 234667777777764 44311  1112356777888887776654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.30  E-value=3.1e-08  Score=83.23  Aligned_cols=135  Identities=17%  Similarity=0.063  Sum_probs=77.6

Q ss_pred             ceeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCC
Q 037671           34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRAS  113 (187)
Q Consensus        34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  113 (187)
                      +.++++++.++... ..-+..+++|+.|++++|.....+....+      ..+++|+.|+++++. ++.... .....++
T Consensus        27 ~~LdLs~N~i~~i~-~~~~~~l~~L~~LdLs~n~~~~~i~~~~f------~~L~~L~~L~Ls~N~-l~~~~p-~~~~~l~   97 (844)
T 3j0a_A           27 ERLLLSFNYIRTVT-ASSFPFLEQLQLLELGSQYTPLTIDKEAF------RNLPNLRILDLGSSK-IYFLHP-DAFQGLF   97 (844)
T ss_dssp             CEEEEESCCCCEEC-SSSCSSCCSCSEEEECTTCCCCEECTTTT------SSCTTCCEEECTTCC-CCEECT-TSSCSCS
T ss_pred             CEEECCCCcCCccC-hhHCcccccCeEEeCCCCCCccccCHHHh------cCCCCCCEEECCCCc-CcccCH-hHccCCc
Confidence            45666666554321 11234567788888886521112222222      336788888888775 443221 1223578


Q ss_pred             CCCEEEecCCCCCHHHHHH-HHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCCH
Q 037671          114 SLQHLNIGGTFITDESLYA-IANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPL  178 (187)
Q Consensus       114 ~L~~L~l~~~~~~~~~~~~-l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~  178 (187)
                      +|++|++++|.+++..... ....+++|++|++++| .++..........+++|++|++++|.++.
T Consensus        98 ~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~  162 (844)
T 3j0a_A           98 HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSNQIFL  162 (844)
T ss_dssp             SCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred             ccCEeeCcCCCCCcccccCccccccCCCCEEECCCC-cccccccchhHhhCCCCCEEECCCCcCCe
Confidence            8888888887766432211 1245778888888875 44433322234567888888888886653

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=98.30  E-value=2.2e-07  Score=50.52  Aligned_cols=32  Identities=34%  Similarity=0.520  Sum_probs=26.3

Q ss_pred             CccccccchhHHHHHHHhhHHHHHHh-hhhhccc
Q 037671            1 FLFVFVIPFVCLLRVSSVCKKWKLGV-KQSLARR   33 (187)
Q Consensus         1 ~I~~~l~~~~~~~~~~~vck~w~~~~-~~~l~~~   33 (187)
                      +||+||+ .+++.++++|||+|++++ .+.+|+.
T Consensus        19 ~I~~~L~-~~dl~~~~~Vck~w~~~~~~~~lW~~   51 (53)
T 1fs1_A           19 GIFSCLC-LPELLKVSGVCKRWYRLASDESLWQT   51 (53)
T ss_dssp             HHHTTSC-GGGHHHHHTTCHHHHHHHTCGGGC--
T ss_pred             HHHHcCC-HHHHHHHHHHHHHHHHHhCChHHHHh
Confidence            4899999 599999999999999977 5567754

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.29  E-value=1e-07  Score=76.98  Aligned_cols=110  Identities=19%  Similarity=0.204  Sum_probs=74.0

Q ss_pred             CCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHh
Q 037671           56 YSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIAN  135 (187)
Q Consensus        56 ~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~  135 (187)
                      +.+++|+|++|    .++.-....+   ..+++|+.|+++++. ++...-. .+..+++|++|+|++|.++.-.. ....
T Consensus        52 ~~~~~LdLs~N----~i~~l~~~~f---~~l~~L~~L~Ls~N~-i~~i~~~-~f~~L~~L~~L~Ls~N~l~~l~~-~~f~  121 (635)
T 4g8a_A           52 FSTKNLDLSFN----PLRHLGSYSF---FSFPELQVLDLSRCE-IQTIEDG-AYQSLSHLSTLILTGNPIQSLAL-GAFS  121 (635)
T ss_dssp             TTCCEEECTTS----CCCEECTTTT---TTCTTCCEEECTTCC-CCEECTT-TTTTCTTCCEEECTTCCCCEECG-GGGT
T ss_pred             cCCCEEEeeCC----CCCCCCHHHH---hCCCCCCEEECCCCc-CCCcChh-HhcCCCCCCEEEccCCcCCCCCH-HHhc
Confidence            36999999987    4443222222   347899999999885 5432111 23458999999999987763211 1235


Q ss_pred             cCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCC
Q 037671          136 SCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLP  177 (187)
Q Consensus       136 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~  177 (187)
                      .+++|++|++++| .++...- .....+++|++|++++|.++
T Consensus       122 ~L~~L~~L~Ls~N-~l~~l~~-~~~~~L~~L~~L~Ls~N~l~  161 (635)
T 4g8a_A          122 GLSSLQKLVAVET-NLASLEN-FPIGHLKTLKELNVAHNLIQ  161 (635)
T ss_dssp             TCTTCCEEECTTS-CCCCSTT-CCCTTCTTCCEEECCSSCCC
T ss_pred             CCCCCCEEECCCC-cCCCCCh-hhhhcCcccCeeccccCccc
Confidence            6899999999986 5543221 11356899999999999775

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.29  E-value=1.1e-07  Score=69.52  Aligned_cols=111  Identities=19%  Similarity=0.172  Sum_probs=75.5

Q ss_pred             CCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHh
Q 037671           56 YSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIAN  135 (187)
Q Consensus        56 ~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~  135 (187)
                      +.++.|++++|    .++......+   ..+++|+.|+++++. ++..... ....+++|++|+++++.++...... ..
T Consensus        28 ~~l~~L~ls~n----~l~~~~~~~~---~~l~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~-~~   97 (276)
T 2z62_A           28 FSTKNLDLSFN----PLRHLGSYSF---FSFPELQVLDLSRCE-IQTIEDG-AYQSLSHLSTLILTGNPIQSLALGA-FS   97 (276)
T ss_dssp             TTCCEEECTTC----CCCEECTTTT---TTCTTCSEEECTTCC-CCEECTT-TTTTCTTCCEEECTTCCCCEECTTT-TT
T ss_pred             CCccEEECCCC----cccccCHhHh---ccccCCcEEECCCCc-CCccCHH-HccCCcCCCEEECCCCccCccChhh-hc
Confidence            46999999976    4554433333   347899999999885 5543221 2245899999999998776432222 24


Q ss_pred             cCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCCH
Q 037671          136 SCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPL  178 (187)
Q Consensus       136 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~  178 (187)
                      .+++|++|+++++ .++...-.. ...+++|++|++++|.++.
T Consensus        98 ~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n~l~~  138 (276)
T 2z62_A           98 GLSSLQKLVAVET-NLASLENFP-IGHLKTLKELNVAHNLIQS  138 (276)
T ss_dssp             TCTTCCEEECTTS-CCCCSTTCC-CTTCTTCCEEECCSSCCCC
T ss_pred             CCccccEEECCCC-CccccCchh-cccCCCCCEEECcCCccce
Confidence            5889999999885 444322111 3468999999999998764

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.29  E-value=2.4e-07  Score=72.81  Aligned_cols=38  Identities=13%  Similarity=0.136  Sum_probs=17.0

Q ss_pred             CCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCC
Q 037671          137 CPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRL  176 (187)
Q Consensus       137 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i  176 (187)
                      ++.|++|++++| .++...... ...+++|+.|++++|.+
T Consensus       151 l~~L~~L~l~~n-~l~~~~~~~-l~~l~~L~~L~l~~n~i  188 (477)
T 2id5_A          151 LNSLEQLTLEKC-NLTSIPTEA-LSHLHGLIVLRLRHLNI  188 (477)
T ss_dssp             CTTCCEEEEESC-CCSSCCHHH-HTTCTTCCEEEEESCCC
T ss_pred             CCCCCEEECCCC-cCcccChhH-hcccCCCcEEeCCCCcC
Confidence            455555555553 333222111 23355555555555544

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.29  E-value=7.2e-08  Score=75.80  Aligned_cols=132  Identities=15%  Similarity=0.090  Sum_probs=81.8

Q ss_pred             ceeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCC
Q 037671           34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRAS  113 (187)
Q Consensus        34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  113 (187)
                      +.+++.++.++... ...+..+++|+.|++++|    .++......+   ..+++|+.|+++++. ++.... .....++
T Consensus        35 ~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n----~i~~~~~~~~---~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~  104 (477)
T 2id5_A           35 RLLDLGKNRIKTLN-QDEFASFPHLEELELNEN----IVSAVEPGAF---NNLFNLRTLGLRSNR-LKLIPL-GVFTGLS  104 (477)
T ss_dssp             SEEECCSSCCCEEC-TTTTTTCTTCCEEECTTS----CCCEECTTTT---TTCTTCCEEECCSSC-CCSCCT-TSSTTCT
T ss_pred             cEEECCCCccceEC-HhHccCCCCCCEEECCCC----ccCEeChhhh---hCCccCCEEECCCCc-CCccCc-ccccCCC
Confidence            45666666554321 123346788899998865    4444333333   346889999998764 443221 1224578


Q ss_pred             CCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCCH
Q 037671          114 SLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPL  178 (187)
Q Consensus       114 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~  178 (187)
                      +|+.|+++++.++..... ....+++|++|+++++ .++...... ...+++|++|++++|.++.
T Consensus       105 ~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n~l~~  166 (477)
T 2id5_A          105 NLTKLDISENKIVILLDY-MFQDLYNLKSLEVGDN-DLVYISHRA-FSGLNSLEQLTLEKCNLTS  166 (477)
T ss_dssp             TCCEEECTTSCCCEECTT-TTTTCTTCCEEEECCT-TCCEECTTS-STTCTTCCEEEEESCCCSS
T ss_pred             CCCEEECCCCccccCChh-HccccccCCEEECCCC-ccceeChhh-ccCCCCCCEEECCCCcCcc
Confidence            999999998776532111 2245788999999884 554433222 2468899999999997653

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.27  E-value=1.1e-07  Score=79.12  Aligned_cols=40  Identities=20%  Similarity=0.395  Sum_probs=23.2

Q ss_pred             cCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCCH
Q 037671          136 SCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPL  178 (187)
Q Consensus       136 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~  178 (187)
                      .+++|++|++++| .++... .. ...+++|++|++++|.++.
T Consensus       198 ~l~~L~~L~Ls~n-~l~~~~-~~-l~~l~~L~~L~Ls~n~l~~  237 (768)
T 3rgz_A          198 RCVNLEFLDVSSN-NFSTGI-PF-LGDCSALQHLDISGNKLSG  237 (768)
T ss_dssp             TCTTCCEEECCSS-CCCSCC-CB-CTTCCSCCEEECCSSCCCS
T ss_pred             cCCcCCEEECcCC-cCCCCC-cc-cccCCCCCEEECcCCcCCC
Confidence            4566666666664 332211 11 3456778888888887763

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.26  E-value=4.1e-07  Score=68.14  Aligned_cols=38  Identities=13%  Similarity=0.030  Sum_probs=18.7

Q ss_pred             hcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCC
Q 037671           53 GYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGL   97 (187)
Q Consensus        53 ~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~   97 (187)
                      ..+++|+.|++++|    .++......+   ..+++|++|+++++
T Consensus        73 ~~l~~L~~L~L~~n----~l~~~~~~~~---~~l~~L~~L~Ls~n  110 (330)
T 1xku_A           73 KNLKNLHTLILINN----KISKISPGAF---APLVKLERLYLSKN  110 (330)
T ss_dssp             TTCTTCCEEECCSS----CCCCBCTTTT---TTCTTCCEEECCSS
T ss_pred             ccCCCCCEEECCCC----cCCeeCHHHh---cCCCCCCEEECCCC
Confidence            34566777777654    3332222222   22455666666554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.25  E-value=1.1e-07  Score=74.41  Aligned_cols=39  Identities=18%  Similarity=0.100  Sum_probs=19.3

Q ss_pred             CCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCC
Q 037671          137 CPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLP  177 (187)
Q Consensus       137 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~  177 (187)
                      +++|++|+++++ .++...... ...+++|+.|++++|.++
T Consensus       241 l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~N~l~  279 (452)
T 3zyi_A          241 LSSLKKLWVMNS-QVSLIERNA-FDGLASLVELNLAHNNLS  279 (452)
T ss_dssp             CTTCCEEECTTS-CCCEECTTT-TTTCTTCCEEECCSSCCS
T ss_pred             ccCCCEEEeCCC-cCceECHHH-hcCCCCCCEEECCCCcCC
Confidence            455555555543 333222111 234566777777766554

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.25  E-value=3.6e-07  Score=73.34  Aligned_cols=65  Identities=17%  Similarity=0.184  Sum_probs=32.8

Q ss_pred             cCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHH-HHHHHHhcCCCCCEEEecCCCCC
Q 037671           54 YAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDK-GVVQLISRASSLQHLNIGGTFIT  126 (187)
Q Consensus        54 ~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~  126 (187)
                      .+++|+.|++++|    .+++.....+   ..+++|+.|+++++. ++.- .+......+++|+.|++++|.++
T Consensus       351 ~l~~L~~L~l~~n----~l~~~~~~~~---~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~~L~l~~N~l~  416 (562)
T 3a79_B          351 SPSSFTFLNFTQN----VFTDSVFQGC---STLKRLQTLILQRNG-LKNFFKVALMTKNMSSLETLDVSLNSLN  416 (562)
T ss_dssp             SCCCCCEEECCSS----CCCTTTTTTC---CSCSSCCEEECCSSC-CCBTTHHHHTTTTCTTCCEEECTTSCCB
T ss_pred             CCCCceEEECCCC----ccccchhhhh---cccCCCCEEECCCCC-cCCcccchhhhcCCCCCCEEECCCCcCC
Confidence            4456777777654    3443222222   235667777776654 4331 22222334566666666665443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.24  E-value=3.1e-07  Score=76.44  Aligned_cols=62  Identities=13%  Similarity=0.278  Sum_probs=32.8

Q ss_pred             CCCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCC
Q 037671          112 ASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLP  177 (187)
Q Consensus       112 ~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~  177 (187)
                      +++|++|+++++.++... .. ...+++|++|++++| .++...... ...+++|++|++++|.++
T Consensus       199 l~~L~~L~Ls~n~l~~~~-~~-l~~l~~L~~L~Ls~n-~l~~~~~~~-l~~l~~L~~L~Ls~n~l~  260 (768)
T 3rgz_A          199 CVNLEFLDVSSNNFSTGI-PF-LGDCSALQHLDISGN-KLSGDFSRA-ISTCTELKLLNISSNQFV  260 (768)
T ss_dssp             CTTCCEEECCSSCCCSCC-CB-CTTCCSCCEEECCSS-CCCSCHHHH-TTTCSSCCEEECCSSCCE
T ss_pred             CCcCCEEECcCCcCCCCC-cc-cccCCCCCEEECcCC-cCCCcccHH-HhcCCCCCEEECCCCccc
Confidence            445555555554443211 01 234666777777764 444333222 345677777777777553

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=98.23  E-value=4.8e-08  Score=72.90  Aligned_cols=132  Identities=14%  Similarity=0.117  Sum_probs=68.6

Q ss_pred             ceeeecccccCHH-HHHHHHhcCCCCcEEEeee-ccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhc
Q 037671           34 KNLSFAGWKMDDD-STARLVGYAYSLKELEISR-SRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISR  111 (187)
Q Consensus        34 ~~l~~~~~~l~~~-~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  111 (187)
                      +.+++.++.+... .+...+..+++|+.|++++ +    .++......+   ..+++|++|+++++. ++.... .....
T Consensus        53 ~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n----~l~~~~p~~l---~~l~~L~~L~Ls~n~-l~~~~p-~~~~~  123 (313)
T 1ogq_A           53 NNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGIN----NLVGPIPPAI---AKLTQLHYLYITHTN-VSGAIP-DFLSQ  123 (313)
T ss_dssp             EEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEET----TEESCCCGGG---GGCTTCSEEEEEEEC-CEEECC-GGGGG
T ss_pred             EEEECCCCCccCCcccChhHhCCCCCCeeeCCCCC----cccccCChhH---hcCCCCCEEECcCCe-eCCcCC-HHHhC
Confidence            3456666555420 1223445678888888884 4    3333222222   235777888777654 432111 12234


Q ss_pred             CCCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCC-CCcEEEeeCCCCC
Q 037671          112 ASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCG-RLESINVWGTRLP  177 (187)
Q Consensus       112 ~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~-~L~~L~l~~~~i~  177 (187)
                      +++|++|+++++.++...... ...+++|++|+++++ .++......+. .++ +|++|++++|.++
T Consensus       124 l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~L~~N-~l~~~~p~~l~-~l~~~L~~L~L~~N~l~  187 (313)
T 1ogq_A          124 IKTLVTLDFSYNALSGTLPPS-ISSLPNLVGITFDGN-RISGAIPDSYG-SFSKLFTSMTISRNRLT  187 (313)
T ss_dssp             CTTCCEEECCSSEEESCCCGG-GGGCTTCCEEECCSS-CCEEECCGGGG-CCCTTCCEEECCSSEEE
T ss_pred             CCCCCEEeCCCCccCCcCChH-HhcCCCCCeEECcCC-cccCcCCHHHh-hhhhcCcEEECcCCeee
Confidence            677777777776554211111 234677777777764 44422212222 343 6777777766543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.23  E-value=2.4e-07  Score=64.32  Aligned_cols=109  Identities=16%  Similarity=0.048  Sum_probs=71.9

Q ss_pred             CCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHh
Q 037671           56 YSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIAN  135 (187)
Q Consensus        56 ~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~  135 (187)
                      ++++.|++++|    .++.-. ..+   ..+++|+.|+++++. ++..... ....+++|+.|++++|.++.-.... ..
T Consensus        31 ~~l~~L~L~~n----~i~~ip-~~~---~~l~~L~~L~Ls~N~-i~~i~~~-~f~~l~~L~~L~Ls~N~l~~i~~~~-f~   99 (193)
T 2wfh_A           31 RDVTELYLDGN----QFTLVP-KEL---SNYKHLTLIDLSNNR-ISTLSNQ-SFSNMTQLLTLILSYNRLRCIPPRT-FD   99 (193)
T ss_dssp             TTCCEEECCSS----CCCSCC-GGG---GGCTTCCEEECCSSC-CCCCCTT-TTTTCTTCCEEECCSSCCCBCCTTT-TT
T ss_pred             CCCCEEECCCC----cCchhH-HHh---hcccCCCEEECCCCc-CCEeCHh-HccCCCCCCEEECCCCccCEeCHHH-hC
Confidence            57999999977    333211 122   346889999998775 5442221 2245789999999997766421111 24


Q ss_pred             cCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCC
Q 037671          136 SCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLP  177 (187)
Q Consensus       136 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~  177 (187)
                      .+++|+.|+++++ .++.... .....+++|+.|++++|.+.
T Consensus       100 ~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A          100 GLKSLRLLSLHGN-DISVVPE-GAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             TCTTCCEEECCSS-CCCBCCT-TTTTTCTTCCEEECCSSCEE
T ss_pred             CCCCCCEEECCCC-CCCeeCh-hhhhcCccccEEEeCCCCee
Confidence            5788999999884 5553321 22346789999999999764

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.22  E-value=6.5e-07  Score=75.44  Aligned_cols=111  Identities=13%  Similarity=0.075  Sum_probs=50.1

Q ss_pred             cCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCH-H---HHHHHH---hcCCCCCEEEecCCCCC
Q 037671           54 YAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITD-K---GVVQLI---SRASSLQHLNIGGTFIT  126 (187)
Q Consensus        54 ~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~-~---~~~~~~---~~~~~L~~L~l~~~~~~  126 (187)
                      .+++|+.|++++|    .+.......+   ..+++|+.|+++++..++. .   .+..+.   ..+++|+.|+++++.++
T Consensus       489 ~L~~L~~L~Ls~N----~l~~~iP~~l---~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~  561 (876)
T 4ecn_A          489 NLKDLTDVELYNC----PNMTQLPDFL---YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE  561 (876)
T ss_dssp             GCTTCCEEEEESC----TTCCSCCGGG---GGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred             cCCCCCEEECcCC----CCCccChHHH---hCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence            4566666666654    2222211222   2246666666665532333 1   111111   12346666666665554


Q ss_pred             HHHHHH--HHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCC
Q 037671          127 DESLYA--IANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLP  177 (187)
Q Consensus       127 ~~~~~~--l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~  177 (187)
                        .+..  ....+++|++|+++++ .++  .+. ....+++|+.|++++|.++
T Consensus       562 --~ip~~~~l~~L~~L~~L~Ls~N-~l~--~lp-~~~~L~~L~~L~Ls~N~l~  608 (876)
T 4ecn_A          562 --EFPASASLQKMVKLGLLDCVHN-KVR--HLE-AFGTNVKLTDLKLDYNQIE  608 (876)
T ss_dssp             --BCCCHHHHTTCTTCCEEECTTS-CCC--BCC-CCCTTSEESEEECCSSCCS
T ss_pred             --ccCChhhhhcCCCCCEEECCCC-Ccc--cch-hhcCCCcceEEECcCCccc
Confidence              1211  2234556666666553 333  111 1223455555555555443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.22  E-value=1.1e-07  Score=70.25  Aligned_cols=30  Identities=17%  Similarity=0.180  Sum_probs=14.6

Q ss_pred             ceeeecccccCHHHHHHHHhcCCCCcEEEeeec
Q 037671           34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRS   66 (187)
Q Consensus        34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~   66 (187)
                      +.+++.++.++....   ...+++|+.|++++|
T Consensus        58 ~~L~L~~n~l~~~~~---~~~l~~L~~L~Ls~N   87 (290)
T 1p9a_G           58 TQLNLDRAELTKLQV---DGTLPVLGTLDLSHN   87 (290)
T ss_dssp             CEEECTTSCCCEEEC---CSCCTTCCEEECCSS
T ss_pred             CEEECCCCccCcccC---CCCCCcCCEEECCCC
Confidence            345555554432111   134566666666655

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.22  E-value=4.9e-07  Score=72.83  Aligned_cols=105  Identities=14%  Similarity=0.232  Sum_probs=69.8

Q ss_pred             CCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHhc
Q 037671           57 SLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIANS  136 (187)
Q Consensus        57 ~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~  136 (187)
                      .|+.|++++|    .++.-  ..+   ..+++|+.|+++++. ++  .+......+++|+.|++++|.++.  +. -...
T Consensus       442 ~L~~L~Ls~n----~l~~l--p~~---~~l~~L~~L~Ls~N~-l~--~lp~~~~~l~~L~~L~Ls~N~l~~--lp-~l~~  506 (567)
T 1dce_A          442 DVRVLHLAHK----DLTVL--CHL---EQLLLVTHLDLSHNR-LR--ALPPALAALRCLEVLQASDNALEN--VD-GVAN  506 (567)
T ss_dssp             TCSEEECTTS----CCSSC--CCG---GGGTTCCEEECCSSC-CC--CCCGGGGGCTTCCEEECCSSCCCC--CG-GGTT
T ss_pred             CceEEEecCC----CCCCC--cCc---cccccCcEeecCccc-cc--ccchhhhcCCCCCEEECCCCCCCC--Cc-ccCC
Confidence            5888999876    33321  112   236789999998775 55  222234568899999999987764  22 2345


Q ss_pred             CCccceeeccCCCCCcHHH-HHHHHhcCCCCcEEEeeCCCCCH
Q 037671          137 CPQLKSIVLWSCRQVTGNG-LLFLVNKCGRLESINVWGTRLPL  178 (187)
Q Consensus       137 ~~~L~~L~l~~~~~~~~~~-~~~l~~~~~~L~~L~l~~~~i~~  178 (187)
                      +++|++|+++++ .++... ... ...+++|+.|++++|.++.
T Consensus       507 l~~L~~L~Ls~N-~l~~~~~p~~-l~~l~~L~~L~L~~N~l~~  547 (567)
T 1dce_A          507 LPRLQELLLCNN-RLQQSAAIQP-LVSCPRLVLLNLQGNSLCQ  547 (567)
T ss_dssp             CSSCCEEECCSS-CCCSSSTTGG-GGGCTTCCEEECTTSGGGG
T ss_pred             CCCCcEEECCCC-CCCCCCCcHH-HhcCCCCCEEEecCCcCCC
Confidence            888999999885 555432 222 3468899999999987653

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.21  E-value=2.4e-07  Score=65.64  Aligned_cols=129  Identities=14%  Similarity=0.134  Sum_probs=81.7

Q ss_pred             ceeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhh-hhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcC
Q 037671           34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGL-YRMSFAKCISNLTSISLWGLTGITDKGVVQLISRA  112 (187)
Q Consensus        34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l-~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  112 (187)
                      ..++..+..++.  +..  ...+.++.|++++|    .++.... ..+   ..+++|+.|+++++. ++...-. ....+
T Consensus        14 ~~l~~s~n~l~~--iP~--~~~~~~~~L~L~~N----~l~~~~~~~~~---~~l~~L~~L~L~~N~-i~~i~~~-~~~~l   80 (220)
T 2v70_A           14 TTVDCSNQKLNK--IPE--HIPQYTAELRLNNN----EFTVLEATGIF---KKLPQLRKINFSNNK-ITDIEEG-AFEGA   80 (220)
T ss_dssp             TEEECCSSCCSS--CCS--CCCTTCSEEECCSS----CCCEECCCCCG---GGCTTCCEEECCSSC-CCEECTT-TTTTC
T ss_pred             CEeEeCCCCccc--Ccc--CCCCCCCEEEcCCC----cCCccCchhhh---ccCCCCCEEECCCCc-CCEECHH-HhCCC
Confidence            356666665543  110  12345889999987    3433211 111   347899999998775 5543221 23458


Q ss_pred             CCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCCH
Q 037671          113 SSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPL  178 (187)
Q Consensus       113 ~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~  178 (187)
                      ++|+.|+++++.++.-.. .....++.|++|+++++ .++...-.. ...+++|+.|++++|.++.
T Consensus        81 ~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~L~~N~l~~  143 (220)
T 2v70_A           81 SGVNEILLTSNRLENVQH-KMFKGLESLKTLMLRSN-RITCVGNDS-FIGLSSVRLLSLYDNQITT  143 (220)
T ss_dssp             TTCCEEECCSSCCCCCCG-GGGTTCSSCCEEECTTS-CCCCBCTTS-STTCTTCSEEECTTSCCCC
T ss_pred             CCCCEEECCCCccCccCH-hHhcCCcCCCEEECCCC-cCCeECHhH-cCCCccCCEEECCCCcCCE
Confidence            999999999987764221 12346899999999985 555432222 2468999999999997753

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.21  E-value=1.4e-07  Score=65.42  Aligned_cols=112  Identities=18%  Similarity=0.126  Sum_probs=73.2

Q ss_pred             CCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHh
Q 037671           56 YSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIAN  135 (187)
Q Consensus        56 ~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~  135 (187)
                      +.++.|++++|    .++.......  -...++|+.|+++++. ++.... .....+++|+.|++++|.++...... ..
T Consensus        29 ~~l~~L~l~~n----~i~~~~~~~~--~~~l~~L~~L~Ls~N~-l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~   99 (192)
T 1w8a_A           29 LHTTELLLNDN----ELGRISSDGL--FGRLPHLVKLELKRNQ-LTGIEP-NAFEGASHIQELQLGENKIKEISNKM-FL   99 (192)
T ss_dssp             TTCSEEECCSC----CCCSBCCSCS--GGGCTTCCEEECCSSC-CCCBCT-TTTTTCTTCCEEECCSCCCCEECSSS-ST
T ss_pred             CCCCEEECCCC----cCCccCCccc--cccCCCCCEEECCCCC-CCCcCH-hHcCCcccCCEEECCCCcCCccCHHH-hc
Confidence            47999999977    3332221100  1236899999998875 554321 12345789999999998776422111 23


Q ss_pred             cCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCCH
Q 037671          136 SCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPL  178 (187)
Q Consensus       136 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~  178 (187)
                      .+++|++|+++++ .++...... ...+++|++|++++|.++.
T Consensus       100 ~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~N~l~c  140 (192)
T 1w8a_A          100 GLHQLKTLNLYDN-QISCVMPGS-FEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             TCTTCCEEECCSS-CCCEECTTS-STTCTTCCEEECTTCCBCC
T ss_pred             CCCCCCEEECCCC-cCCeeCHHH-hhcCCCCCEEEeCCCCccC
Confidence            5788999999985 665432222 3457899999999998763

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.20  E-value=1.3e-06  Score=71.20  Aligned_cols=117  Identities=11%  Similarity=0.140  Sum_probs=76.2

Q ss_pred             HHhcCCCCcEEEeeeccCCcccchh-----------------hhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCC
Q 037671           51 LVGYAYSLKELEISRSRWGCQITDN-----------------GLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRAS  113 (187)
Q Consensus        51 ~~~~~~~L~~L~l~~~~~~~~~~~~-----------------~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  113 (187)
                      .+..+++|+.|++++|    .++..                 ....+.+ ..+++|++|++++|. +... +......++
T Consensus       201 ~l~~l~~L~~L~Ls~n----~l~~~~~~~~~~~~~~~~~~~~ip~~l~~-~~l~~L~~L~L~~n~-l~~~-~p~~l~~l~  273 (636)
T 4eco_A          201 AVMRLTKLRQFYMGNS----PFVAENICEAWENENSEYAQQYKTEDLKW-DNLKDLTDVEVYNCP-NLTK-LPTFLKALP  273 (636)
T ss_dssp             GGGGCTTCCEEEEESC----CCCGGGBSSSCSCTTSHHHHHHTTSCCCG-GGCTTCCEEEEECCT-TCSS-CCTTTTTCS
T ss_pred             HHhcccCCCEEECcCC----ccccccccccccccccchhcccCchhhhh-cccCCCCEEEecCCc-CCcc-ChHHHhcCC
Confidence            3556889999999976    44442                 1111110 157889999998875 3221 112234588


Q ss_pred             CCCEEEecCCC-CCH-HHHHHHHh-----cCCccceeeccCCCCCcHHHHHH--HHhcCCCCcEEEeeCCCCC
Q 037671          114 SLQHLNIGGTF-ITD-ESLYAIAN-----SCPQLKSIVLWSCRQVTGNGLLF--LVNKCGRLESINVWGTRLP  177 (187)
Q Consensus       114 ~L~~L~l~~~~-~~~-~~~~~l~~-----~~~~L~~L~l~~~~~~~~~~~~~--l~~~~~~L~~L~l~~~~i~  177 (187)
                      +|+.|+++++. ++. ..-..+..     .+++|++|++++| .++  .+..  ....+++|+.|++++|.++
T Consensus       274 ~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~--~ip~~~~l~~l~~L~~L~L~~N~l~  343 (636)
T 4eco_A          274 EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLK--TFPVETSLQKMKKLGMLECLYNQLE  343 (636)
T ss_dssp             SCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCS--SCCCHHHHTTCTTCCEEECCSCCCE
T ss_pred             CCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCC--ccCchhhhccCCCCCEEeCcCCcCc
Confidence            99999999987 887 33333332     3588999999885 555  2222  3456889999999988765

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.20  E-value=2.8e-06  Score=71.61  Aligned_cols=117  Identities=15%  Similarity=0.200  Sum_probs=79.7

Q ss_pred             HHhcCCCCcEEEeeeccCCcccchh-----------------hhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCC
Q 037671           51 LVGYAYSLKELEISRSRWGCQITDN-----------------GLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRAS  113 (187)
Q Consensus        51 ~~~~~~~L~~L~l~~~~~~~~~~~~-----------------~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  113 (187)
                      .+..+++|+.|++++|    .++..                 ....+.+ ..+++|+.|++++|. +... +......++
T Consensus       443 ~l~~L~~L~~L~Ls~N----~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f-~~L~~L~~L~Ls~N~-l~~~-iP~~l~~L~  515 (876)
T 4ecn_A          443 AIQRLTKLQIIYFANS----PFTYDNIAVDWEDANSDYAKQYENEELSW-SNLKDLTDVELYNCP-NMTQ-LPDFLYDLP  515 (876)
T ss_dssp             GGGGCTTCCEEEEESC----CCCGGGBSSSCSCTTSHHHHHHTTSCCCG-GGCTTCCEEEEESCT-TCCS-CCGGGGGCS
T ss_pred             HHhcCCCCCEEECcCC----cCCCCcccccccccccccccccCChhhhh-ccCCCCCEEECcCCC-CCcc-ChHHHhCCC
Confidence            3567899999999987    45541                 1111110 157999999999885 2221 113345689


Q ss_pred             CCCEEEecCCC-CCH-H---HHHHHH---hcCCccceeeccCCCCCcHHHHHH--HHhcCCCCcEEEeeCCCCC
Q 037671          114 SLQHLNIGGTF-ITD-E---SLYAIA---NSCPQLKSIVLWSCRQVTGNGLLF--LVNKCGRLESINVWGTRLP  177 (187)
Q Consensus       114 ~L~~L~l~~~~-~~~-~---~~~~l~---~~~~~L~~L~l~~~~~~~~~~~~~--l~~~~~~L~~L~l~~~~i~  177 (187)
                      +|+.|+++++. ++. .   .+..+.   ..+|+|++|++++| .++  .+..  ....+++|+.|++++|.++
T Consensus       516 ~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~--~ip~~~~l~~L~~L~~L~Ls~N~l~  586 (876)
T 4ecn_A          516 ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLE--EFPASASLQKMVKLGLLDCVHNKVR  586 (876)
T ss_dssp             SCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCC--BCCCHHHHTTCTTCCEEECTTSCCC
T ss_pred             CCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCC--ccCChhhhhcCCCCCEEECCCCCcc
Confidence            99999999987 876 3   233322   35679999999985 555  2222  3457899999999999876

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.19  E-value=3.7e-07  Score=72.21  Aligned_cols=110  Identities=20%  Similarity=0.188  Sum_probs=78.1

Q ss_pred             cCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHH
Q 037671           54 YAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAI  133 (187)
Q Consensus        54 ~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l  133 (187)
                      .+++|+.|++++|    .++......+   ..+++|+.|+++++. ++......+...+++|+.|++++|.++..  .. 
T Consensus       118 ~l~~L~~L~L~~N----~l~~~~~~~~---~~l~~L~~L~Ls~N~-l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~--~~-  186 (487)
T 3oja_A          118 RGQGKKNIYLANN----KITMLRDLDE---GCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNFIYDV--KG-  186 (487)
T ss_dssp             CCSSCEEEECCSS----CCCSGGGBCG---GGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSCCCEE--EC-
T ss_pred             ccCCCCEEECCCC----CCCCCCchhh---cCCCCCCEEECCCCC-CCCcChHHHhhhCCcccEEecCCCccccc--cc-
Confidence            3578999999976    4554332222   236889999998886 66655555555689999999999887743  11 


Q ss_pred             HhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCC
Q 037671          134 ANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLP  177 (187)
Q Consensus       134 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~  177 (187)
                      ...++.|+.|+++++ .++.....  ...+++|+.|++++|.++
T Consensus       187 ~~~l~~L~~L~Ls~N-~l~~~~~~--~~~l~~L~~L~Ls~N~l~  227 (487)
T 3oja_A          187 QVVFAKLKTLDLSSN-KLAFMGPE--FQSAAGVTWISLRNNKLV  227 (487)
T ss_dssp             CCCCTTCCEEECCSS-CCCEECGG--GGGGTTCSEEECTTSCCC
T ss_pred             cccCCCCCEEECCCC-CCCCCCHh--HcCCCCccEEEecCCcCc
Confidence            124788999999985 66543322  346799999999999876

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.18  E-value=8.5e-07  Score=69.60  Aligned_cols=75  Identities=19%  Similarity=0.148  Sum_probs=39.1

Q ss_pred             ceeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCC
Q 037671           34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRAS  113 (187)
Q Consensus        34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  113 (187)
                      +.+++.++.++..  . -+..+++|+.|++++|    .++.-.   +   ..+++|++|+++++. ++...    ...++
T Consensus        45 ~~L~Ls~n~l~~~--~-~l~~l~~L~~L~Ls~n----~l~~~~---~---~~l~~L~~L~Ls~N~-l~~~~----~~~l~  106 (457)
T 3bz5_A           45 TSLDCHNSSITDM--T-GIEKLTGLTKLICTSN----NITTLD---L---SQNTNLTYLACDSNK-LTNLD----VTPLT  106 (457)
T ss_dssp             CEEECCSSCCCCC--T-TGGGCTTCSEEECCSS----CCSCCC---C---TTCTTCSEEECCSSC-CSCCC----CTTCT
T ss_pred             CEEEccCCCcccC--h-hhcccCCCCEEEccCC----cCCeEc---c---ccCCCCCEEECcCCC-Cceee----cCCCC
Confidence            5667777666542  2 2456778888888865    333321   1   224556666665543 33321    22345


Q ss_pred             CCCEEEecCCCCC
Q 037671          114 SLQHLNIGGTFIT  126 (187)
Q Consensus       114 ~L~~L~l~~~~~~  126 (187)
                      +|++|+++++.++
T Consensus       107 ~L~~L~L~~N~l~  119 (457)
T 3bz5_A          107 KLTYLNCDTNKLT  119 (457)
T ss_dssp             TCCEEECCSSCCS
T ss_pred             cCCEEECCCCcCC
Confidence            5555555554443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.17  E-value=3.1e-07  Score=67.77  Aligned_cols=127  Identities=15%  Similarity=0.107  Sum_probs=74.3

Q ss_pred             eeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCC
Q 037671           35 NLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASS  114 (187)
Q Consensus        35 ~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  114 (187)
                      .+++.++.++... ...+..+++|+.|++++|    .++.-..     ...+++|+.|+++++. ++.  +......+++
T Consensus        35 ~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~n----~l~~~~~-----~~~l~~L~~L~Ls~N~-l~~--l~~~~~~l~~  101 (290)
T 1p9a_G           35 ILHLSENLLYTFS-LATLMPYTRLTQLNLDRA----ELTKLQV-----DGTLPVLGTLDLSHNQ-LQS--LPLLGQTLPA  101 (290)
T ss_dssp             EEECTTSCCSEEE-GGGGTTCTTCCEEECTTS----CCCEEEC-----CSCCTTCCEEECCSSC-CSS--CCCCTTTCTT
T ss_pred             EEEcCCCcCCccC-HHHhhcCCCCCEEECCCC----ccCcccC-----CCCCCcCCEEECCCCc-CCc--CchhhccCCC
Confidence            4555555544221 122345677777777765    3332111     1346788888887664 432  2222345788


Q ss_pred             CCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCC
Q 037671          115 LQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLP  177 (187)
Q Consensus       115 L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~  177 (187)
                      |+.|+++++.++.-.. .....+++|++|+++++ .++.... .....+++|+.|++++|.++
T Consensus       102 L~~L~l~~N~l~~l~~-~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~N~l~  161 (290)
T 1p9a_G          102 LTVLDVSFNRLTSLPL-GALRGLGELQELYLKGN-ELKTLPP-GLLTPTPKLEKLSLANNNLT  161 (290)
T ss_dssp             CCEEECCSSCCCCCCS-STTTTCTTCCEEECTTS-CCCCCCT-TTTTTCTTCCEEECTTSCCS
T ss_pred             CCEEECCCCcCcccCH-HHHcCCCCCCEEECCCC-CCCccCh-hhcccccCCCEEECCCCcCC
Confidence            8999998876653111 11245788999999885 5553321 22345788999999998765

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.16  E-value=1.5e-07  Score=79.16  Aligned_cols=115  Identities=13%  Similarity=0.063  Sum_probs=77.4

Q ss_pred             cCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHH
Q 037671           54 YAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAI  133 (187)
Q Consensus        54 ~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l  133 (187)
                      ..+++++|++++|    .++......+   ..+++|+.|+++++..+.... ......+++|++|+++++.++...... 
T Consensus        22 lp~~l~~LdLs~N----~i~~i~~~~~---~~l~~L~~LdLs~n~~~~~i~-~~~f~~L~~L~~L~Ls~N~l~~~~p~~-   92 (844)
T 3j0a_A           22 VLNTTERLLLSFN----YIRTVTASSF---PFLEQLQLLELGSQYTPLTID-KEAFRNLPNLRILDLGSSKIYFLHPDA-   92 (844)
T ss_dssp             SCTTCCEEEEESC----CCCEECSSSC---SSCCSCSEEEECTTCCCCEEC-TTTTSSCTTCCEEECTTCCCCEECTTS-
T ss_pred             CCCCcCEEECCCC----cCCccChhHC---cccccCeEEeCCCCCCccccC-HHHhcCCCCCCEEECCCCcCcccCHhH-
Confidence            3467999999987    4444333232   347999999999884332211 112356899999999998776432222 


Q ss_pred             HhcCCccceeeccCCCCCcHHHHHH-HHhcCCCCcEEEeeCCCCCH
Q 037671          134 ANSCPQLKSIVLWSCRQVTGNGLLF-LVNKCGRLESINVWGTRLPL  178 (187)
Q Consensus       134 ~~~~~~L~~L~l~~~~~~~~~~~~~-l~~~~~~L~~L~l~~~~i~~  178 (187)
                      ...+++|++|++++| .+++..... ....+++|++|++++|.++.
T Consensus        93 ~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~  137 (844)
T 3j0a_A           93 FQGLFHLFELRLYFC-GLSDAVLKDGYFRNLKALTRLDLSKNQIRS  137 (844)
T ss_dssp             SCSCSSCCCEECTTC-CCSSCCSTTCCCSSCSSCCEEEEESCCCCC
T ss_pred             ccCCcccCEeeCcCC-CCCcccccCccccccCCCCEEECCCCcccc
Confidence            345899999999986 555432221 23468999999999998764

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.16  E-value=4.6e-07  Score=70.59  Aligned_cols=63  Identities=11%  Similarity=0.037  Sum_probs=32.9

Q ss_pred             cCCCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCCH
Q 037671          111 RASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPL  178 (187)
Q Consensus       111 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~  178 (187)
                      .+++|+.|+++++.++.-  .. ...+++|++|+++++ .++...... ...+++|+.|++++|.++.
T Consensus       183 ~l~~L~~L~L~~n~l~~~--~~-~~~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~L~~n~l~~  245 (440)
T 3zyj_A          183 GLSNLRYLNLAMCNLREI--PN-LTPLIKLDELDLSGN-HLSAIRPGS-FQGLMHLQKLWMIQSQIQV  245 (440)
T ss_dssp             TCSSCCEEECTTSCCSSC--CC-CTTCSSCCEEECTTS-CCCEECTTT-TTTCTTCCEEECTTCCCCE
T ss_pred             cccccCeecCCCCcCccc--cc-cCCCcccCEEECCCC-ccCccChhh-hccCccCCEEECCCCceeE
Confidence            355666666666544421  11 233556666777664 444332111 2356777777777776653

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.15  E-value=2.7e-07  Score=70.14  Aligned_cols=112  Identities=10%  Similarity=0.086  Sum_probs=75.6

Q ss_pred             CCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHh
Q 037671           56 YSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIAN  135 (187)
Q Consensus        56 ~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~  135 (187)
                      +.++.|++++|    .++.-....+  ...+++|+.|+++++. ++...-. ....+++|+.|++++|.++.-.. ....
T Consensus        39 ~~l~~L~Ls~N----~l~~l~~~~~--~~~l~~L~~L~L~~N~-i~~i~~~-~~~~l~~L~~L~Ls~N~l~~~~~-~~~~  109 (361)
T 2xot_A           39 SYTALLDLSHN----NLSRLRAEWT--PTRLTNLHSLLLSHNH-LNFISSE-AFVPVPNLRYLDLSSNHLHTLDE-FLFS  109 (361)
T ss_dssp             TTCSEEECCSS----CCCEECTTSS--SSCCTTCCEEECCSSC-CCEECTT-TTTTCTTCCEEECCSSCCCEECT-TTTT
T ss_pred             CCCCEEECCCC----CCCccChhhh--hhcccccCEEECCCCc-CCccChh-hccCCCCCCEEECCCCcCCcCCH-HHhC
Confidence            45899999987    4444332222  1247899999998775 5543221 22458999999999987763211 1234


Q ss_pred             cCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCCH
Q 037671          136 SCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPL  178 (187)
Q Consensus       136 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~  178 (187)
                      .+++|++|+++++ .++...-.. ...+++|+.|++++|.++.
T Consensus       110 ~l~~L~~L~L~~N-~i~~~~~~~-~~~l~~L~~L~L~~N~l~~  150 (361)
T 2xot_A          110 DLQALEVLLLYNN-HIVVVDRNA-FEDMAQLQKLYLSQNQISR  150 (361)
T ss_dssp             TCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSSCCCS
T ss_pred             CCcCCCEEECCCC-cccEECHHH-hCCcccCCEEECCCCcCCe
Confidence            5889999999985 665433222 3468999999999997763

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.12  E-value=2.4e-07  Score=75.93  Aligned_cols=88  Identities=14%  Similarity=0.130  Sum_probs=40.6

Q ss_pred             CCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHH-hcCC
Q 037671           86 ISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLV-NKCG  164 (187)
Q Consensus        86 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~  164 (187)
                      +++|++|+++++. ++.... .....+++|++|+++++.++...... ...+++|++|+++++ .++......+. ..++
T Consensus        96 l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~  171 (680)
T 1ziw_A           96 CTNLTELHLMSNS-IQKIKN-NPFVKQKNLITLDLSHNGLSSTKLGT-QVQLENLQELLLSNN-KIQALKSEELDIFANS  171 (680)
T ss_dssp             CTTCSEEECCSSC-CCCCCS-CTTTTCTTCCEEECCSSCCSCCCCCS-SSCCTTCCEEECCSS-CCCCBCHHHHGGGTTC
T ss_pred             CCCCCEEECCCCc-cCccCh-hHccccCCCCEEECCCCcccccCchh-hcccccCCEEEccCC-cccccCHHHhhccccc
Confidence            4555566555443 221110 01123556666666665443221111 123556666666653 33333222222 1346


Q ss_pred             CCcEEEeeCCCCC
Q 037671          165 RLESINVWGTRLP  177 (187)
Q Consensus       165 ~L~~L~l~~~~i~  177 (187)
                      +|++|++++|.++
T Consensus       172 ~L~~L~L~~n~l~  184 (680)
T 1ziw_A          172 SLKKLELSSNQIK  184 (680)
T ss_dssp             EESEEECTTCCCC
T ss_pred             cccEEECCCCccc
Confidence            6777777766554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.12  E-value=9.5e-07  Score=71.17  Aligned_cols=121  Identities=14%  Similarity=0.124  Sum_probs=78.1

Q ss_pred             ceeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCC
Q 037671           34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRAS  113 (187)
Q Consensus        34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  113 (187)
                      +.+++.++.++.  +.. +..+++|+.|++++|    .++. ....+   ..+++|+.|+++++. ++.  +. -...++
T Consensus       444 ~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N----~l~~-lp~~~---~~l~~L~~L~Ls~N~-l~~--lp-~l~~l~  508 (567)
T 1dce_A          444 RVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHN----RLRA-LPPAL---AALRCLEVLQASDNA-LEN--VD-GVANLP  508 (567)
T ss_dssp             SEEECTTSCCSS--CCC-GGGGTTCCEEECCSS----CCCC-CCGGG---GGCTTCCEEECCSSC-CCC--CG-GGTTCS
T ss_pred             eEEEecCCCCCC--CcC-ccccccCcEeecCcc----cccc-cchhh---hcCCCCCEEECCCCC-CCC--Cc-ccCCCC
Confidence            346777776654  233 556788999999876    3331 11122   246889999998775 554  22 344588


Q ss_pred             CCCEEEecCCCCCHHH-HHHHHhcCCccceeeccCCCCCcHH--HHHHHHhcCCCCcEEEe
Q 037671          114 SLQHLNIGGTFITDES-LYAIANSCPQLKSIVLWSCRQVTGN--GLLFLVNKCGRLESINV  171 (187)
Q Consensus       114 ~L~~L~l~~~~~~~~~-~~~l~~~~~~L~~L~l~~~~~~~~~--~~~~l~~~~~~L~~L~l  171 (187)
                      +|+.|++++|.++... ... ...+++|+.|+++++ .++..  ....+...+|+|+.|++
T Consensus       509 ~L~~L~Ls~N~l~~~~~p~~-l~~l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          509 RLQELLLCNNRLQQSAAIQP-LVSCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             SCCEEECCSSCCCSSSTTGG-GGGCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCcEEECCCCCCCCCCCcHH-HhcCCCCCEEEecCC-cCCCCccHHHHHHHHCcccCccCC
Confidence            9999999997776432 222 245888999999885 55433  23455566888988864

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.11  E-value=7.9e-07  Score=72.84  Aligned_cols=131  Identities=11%  Similarity=0.029  Sum_probs=80.2

Q ss_pred             ceeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCC
Q 037671           34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRAS  113 (187)
Q Consensus        34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  113 (187)
                      +.+++.++.++... ...+..+++|++|++++|    .++......+   ..+++|+.|+++++. ++...- .....++
T Consensus        28 ~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n----~l~~~~~~~~---~~l~~L~~L~L~~n~-l~~l~~-~~~~~l~   97 (680)
T 1ziw_A           28 TVLNLTHNQLRRLP-AANFTRYSQLTSLDVGFN----TISKLEPELC---QKLPMLKVLNLQHNE-LSQLSD-KTFAFCT   97 (680)
T ss_dssp             SEEECCSSCCCCCC-GGGGGGGTTCSEEECCSS----CCCCCCTTHH---HHCTTCCEEECCSSC-CCCCCT-TTTTTCT
T ss_pred             cEEECCCCCCCCcC-HHHHhCCCcCcEEECCCC----ccCccCHHHH---hcccCcCEEECCCCc-cCccCh-hhhccCC
Confidence            45666666554321 122455788999999865    4444333332   236889999998774 443211 1224578


Q ss_pred             CCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCC
Q 037671          114 SLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLP  177 (187)
Q Consensus       114 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~  177 (187)
                      +|++|+++++.++.-.... ...+++|++|++++| .++...... ...+++|++|++++|.++
T Consensus        98 ~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~Ls~n-~l~~~~~~~-~~~l~~L~~L~L~~n~l~  158 (680)
T 1ziw_A           98 NLTELHLMSNSIQKIKNNP-FVKQKNLITLDLSHN-GLSSTKLGT-QVQLENLQELLLSNNKIQ  158 (680)
T ss_dssp             TCSEEECCSSCCCCCCSCT-TTTCTTCCEEECCSS-CCSCCCCCS-SSCCTTCCEEECCSSCCC
T ss_pred             CCCEEECCCCccCccChhH-ccccCCCCEEECCCC-cccccCchh-hcccccCCEEEccCCccc
Confidence            9999999987664311111 245788999999885 444332222 236889999999998765

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.09  E-value=2e-07  Score=66.66  Aligned_cols=130  Identities=8%  Similarity=0.024  Sum_probs=56.1

Q ss_pred             eeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCC
Q 037671           35 NLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASS  114 (187)
Q Consensus        35 ~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  114 (187)
                      .+++.+++++.... ..+..+++|+.|++++|.   .++.-....+   ..+++|++|++++|+.++.... .....+++
T Consensus        35 ~L~l~~n~l~~i~~-~~~~~l~~L~~L~l~~n~---~l~~i~~~~f---~~l~~L~~L~l~~~n~l~~i~~-~~f~~l~~  106 (239)
T 2xwt_C           35 TLKLIETHLRTIPS-HAFSNLPNISRIYVSIDV---TLQQLESHSF---YNLSKVTHIEIRNTRNLTYIDP-DALKELPL  106 (239)
T ss_dssp             EEEEESCCCSEECT-TTTTTCTTCCEEEEECCS---SCCEECTTTE---ESCTTCCEEEEEEETTCCEECT-TSEECCTT
T ss_pred             EEEEeCCcceEECH-HHccCCCCCcEEeCCCCC---CcceeCHhHc---CCCcCCcEEECCCCCCeeEcCH-HHhCCCCC
Confidence            45555554442111 123456777777777652   1222111111   2356677777765222432211 11123566


Q ss_pred             CCEEEecCCCCCHHHHHHHHhcCCccc---eeeccCCCCCcHHHHHHHHhcCCCCc-EEEeeCCCC
Q 037671          115 LQHLNIGGTFITDESLYAIANSCPQLK---SIVLWSCRQVTGNGLLFLVNKCGRLE-SINVWGTRL  176 (187)
Q Consensus       115 L~~L~l~~~~~~~~~~~~l~~~~~~L~---~L~l~~~~~~~~~~~~~l~~~~~~L~-~L~l~~~~i  176 (187)
                      |+.|+++++.++.  +.. ...++.|+   +|+++++..++..... ....+++|+ +|++++|.+
T Consensus       107 L~~L~l~~n~l~~--lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~-~~~~l~~L~~~L~l~~n~l  168 (239)
T 2xwt_C          107 LKFLGIFNTGLKM--FPD-LTKVYSTDIFFILEITDNPYMTSIPVN-AFQGLCNETLTLKLYNNGF  168 (239)
T ss_dssp             CCEEEEEEECCCS--CCC-CTTCCBCCSEEEEEEESCTTCCEECTT-TTTTTBSSEEEEECCSCCC
T ss_pred             CCEEeCCCCCCcc--ccc-cccccccccccEEECCCCcchhhcCcc-cccchhcceeEEEcCCCCC
Confidence            6666666644432  111 22344444   5555553233222111 112345555 555555544

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.08  E-value=2.3e-06  Score=67.16  Aligned_cols=102  Identities=20%  Similarity=0.152  Sum_probs=74.7

Q ss_pred             cCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHH
Q 037671           54 YAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAI  133 (187)
Q Consensus        54 ~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l  133 (187)
                      .+++|+.|+++++    .+++-  ..+   ..+++|++|+++++. ++...    ...+++|+.|+++++.++.-.    
T Consensus        40 ~l~~L~~L~Ls~n----~l~~~--~~l---~~l~~L~~L~Ls~n~-l~~~~----~~~l~~L~~L~Ls~N~l~~~~----  101 (457)
T 3bz5_A           40 QLATLTSLDCHNS----SITDM--TGI---EKLTGLTKLICTSNN-ITTLD----LSQNTNLTYLACDSNKLTNLD----  101 (457)
T ss_dssp             HHTTCCEEECCSS----CCCCC--TTG---GGCTTCSEEECCSSC-CSCCC----CTTCTTCSEEECCSSCCSCCC----
T ss_pred             HcCCCCEEEccCC----CcccC--hhh---cccCCCCEEEccCCc-CCeEc----cccCCCCCEEECcCCCCceee----
Confidence            4688999999976    44432  122   347999999999886 65532    456899999999998777532    


Q ss_pred             HhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCCH
Q 037671          134 ANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPL  178 (187)
Q Consensus       134 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~  178 (187)
                      ...+++|++|+++++ .++...    ...+++|++|++++|.++.
T Consensus       102 ~~~l~~L~~L~L~~N-~l~~l~----~~~l~~L~~L~l~~N~l~~  141 (457)
T 3bz5_A          102 VTPLTKLTYLNCDTN-KLTKLD----VSQNPLLTYLNCARNTLTE  141 (457)
T ss_dssp             CTTCTTCCEEECCSS-CCSCCC----CTTCTTCCEEECTTSCCSC
T ss_pred             cCCCCcCCEEECCCC-cCCeec----CCCCCcCCEEECCCCccce
Confidence            346889999999985 555432    3567889999998887764

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.05  E-value=4e-07  Score=68.31  Aligned_cols=110  Identities=17%  Similarity=0.155  Sum_probs=70.4

Q ss_pred             CCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHh
Q 037671           56 YSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIAN  135 (187)
Q Consensus        56 ~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~  135 (187)
                      ++|+.|++++|    .++......+   ..+++|+.|+++++. ++..... ....+++|+.|+++++.++.  +..-..
T Consensus       193 ~~L~~L~l~~n----~i~~~~~~~l---~~l~~L~~L~L~~N~-l~~~~~~-~~~~l~~L~~L~L~~N~l~~--lp~~l~  261 (332)
T 2ft3_A          193 ETLNELHLDHN----KIQAIELEDL---LRYSKLYRLGLGHNQ-IRMIENG-SLSFLPTLRELHLDNNKLSR--VPAGLP  261 (332)
T ss_dssp             SSCSCCBCCSS----CCCCCCTTSS---TTCTTCSCCBCCSSC-CCCCCTT-GGGGCTTCCEEECCSSCCCB--CCTTGG
T ss_pred             CCCCEEECCCC----cCCccCHHHh---cCCCCCCEEECCCCc-CCcCChh-HhhCCCCCCEEECCCCcCee--cChhhh
Confidence            57889999876    4444333333   236788999998775 4432211 22457889999999877662  211134


Q ss_pred             cCCccceeeccCCCCCcHHHHHHHHhc-----CCCCcEEEeeCCCCC
Q 037671          136 SCPQLKSIVLWSCRQVTGNGLLFLVNK-----CGRLESINVWGTRLP  177 (187)
Q Consensus       136 ~~~~L~~L~l~~~~~~~~~~~~~l~~~-----~~~L~~L~l~~~~i~  177 (187)
                      .++.|++|+++++ .++..+...+...     .+.|+.|++++|+++
T Consensus       262 ~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~  307 (332)
T 2ft3_A          262 DLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP  307 (332)
T ss_dssp             GCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred             cCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCccc
Confidence            5788999999884 6665554433322     467888999988665

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.04  E-value=3.3e-07  Score=68.73  Aligned_cols=107  Identities=17%  Similarity=0.098  Sum_probs=59.4

Q ss_pred             CCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHhc
Q 037671           57 SLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIANS  136 (187)
Q Consensus        57 ~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~  136 (187)
                      +|+.|++++|    .++.-.      ....++|++|+++++. ++...... ...+++|+.|+++++.++...... ...
T Consensus       173 ~L~~L~l~~n----~l~~l~------~~~~~~L~~L~l~~n~-i~~~~~~~-l~~l~~L~~L~L~~N~l~~~~~~~-~~~  239 (332)
T 2ft3_A          173 KLNYLRISEA----KLTGIP------KDLPETLNELHLDHNK-IQAIELED-LLRYSKLYRLGLGHNQIRMIENGS-LSF  239 (332)
T ss_dssp             CCSCCBCCSS----BCSSCC------SSSCSSCSCCBCCSSC-CCCCCTTS-STTCTTCSCCBCCSSCCCCCCTTG-GGG
T ss_pred             ccCEEECcCC----CCCccC------ccccCCCCEEECCCCc-CCccCHHH-hcCCCCCCEEECCCCcCCcCChhH-hhC
Confidence            6777777755    333211      0113677777777664 44322111 234677888888776655421111 234


Q ss_pred             CCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCCHH
Q 037671          137 CPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPLD  179 (187)
Q Consensus       137 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~  179 (187)
                      ++.|++|++++| .++.-  ......+++|+.|++++|.++..
T Consensus       240 l~~L~~L~L~~N-~l~~l--p~~l~~l~~L~~L~l~~N~l~~~  279 (332)
T 2ft3_A          240 LPTLRELHLDNN-KLSRV--PAGLPDLKLLQVVYLHTNNITKV  279 (332)
T ss_dssp             CTTCCEEECCSS-CCCBC--CTTGGGCTTCCEEECCSSCCCBC
T ss_pred             CCCCCEEECCCC-cCeec--ChhhhcCccCCEEECCCCCCCcc
Confidence            677888888774 44421  11134577788888887776543

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.03  E-value=3.5e-06  Score=68.54  Aligned_cols=85  Identities=20%  Similarity=0.167  Sum_probs=58.6

Q ss_pred             CCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCC
Q 037671           86 ISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGR  165 (187)
Q Consensus        86 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~  165 (187)
                      .++|+.|+++++. ++...     ..+++|+.|++++|.++.     +...+++|++|++++| .++.-  ......+++
T Consensus       220 ~~~L~~L~Ls~N~-L~~lp-----~~l~~L~~L~Ls~N~L~~-----lp~~~~~L~~L~Ls~N-~L~~l--p~~l~~l~~  285 (622)
T 3g06_A          220 PSGLKELIVSGNR-LTSLP-----VLPSELKELMVSGNRLTS-----LPMLPSGLLSLSVYRN-QLTRL--PESLIHLSS  285 (622)
T ss_dssp             CTTCCEEECCSSC-CSCCC-----CCCTTCCEEECCSSCCSC-----CCCCCTTCCEEECCSS-CCCSC--CGGGGGSCT
T ss_pred             CCCCCEEEccCCc-cCcCC-----CCCCcCcEEECCCCCCCc-----CCcccccCcEEeCCCC-CCCcC--CHHHhhccc
Confidence            3678888887664 44311     446788999998877662     2225788999999885 55522  222456899


Q ss_pred             CcEEEeeCCCCCHHHHHhh
Q 037671          166 LESINVWGTRLPLDCFIGL  184 (187)
Q Consensus       166 L~~L~l~~~~i~~~~~~~L  184 (187)
                      |+.|++++|.++......+
T Consensus       286 L~~L~L~~N~l~~~~~~~l  304 (622)
T 3g06_A          286 ETTVNLEGNPLSERTLQAL  304 (622)
T ss_dssp             TCEEECCSCCCCHHHHHHH
T ss_pred             cCEEEecCCCCCCcCHHHH
Confidence            9999999999987665544

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.03  E-value=8.1e-07  Score=73.57  Aligned_cols=111  Identities=25%  Similarity=0.173  Sum_probs=74.5

Q ss_pred             HhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHH
Q 037671           52 VGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLY  131 (187)
Q Consensus        52 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  131 (187)
                      +..++.|+.|+|++|... .+....       ..+++|+.|+|+++. ++  .+..-+..+++|+.|+|++|.++  .+-
T Consensus       220 ~~~l~~L~~L~Ls~n~l~-~l~~~~-------~~l~~L~~L~Ls~N~-l~--~lp~~~~~l~~L~~L~Ls~N~l~--~lp  286 (727)
T 4b8c_D          220 KYDDQLWHALDLSNLQIF-NISANI-------FKYDFLTRLYLNGNS-LT--ELPAEIKNLSNLRVLDLSHNRLT--SLP  286 (727)
T ss_dssp             --CCCCCCEEECTTSCCS-CCCGGG-------GGCCSCSCCBCTTSC-CS--CCCGGGGGGTTCCEEECTTSCCS--SCC
T ss_pred             hccCCCCcEEECCCCCCC-CCChhh-------cCCCCCCEEEeeCCc-Cc--ccChhhhCCCCCCEEeCcCCcCC--ccC
Confidence            445678999999976311 222221       136889999998875 55  22222356899999999998877  221


Q ss_pred             HHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCCH
Q 037671          132 AIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPL  178 (187)
Q Consensus       132 ~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~  178 (187)
                      .-...+++|++|+|++| .++.-.  .-...+++|+.|+|++|.++.
T Consensus       287 ~~~~~l~~L~~L~L~~N-~l~~lp--~~~~~l~~L~~L~L~~N~l~~  330 (727)
T 4b8c_D          287 AELGSCFQLKYFYFFDN-MVTTLP--WEFGNLCNLQFLGVEGNPLEK  330 (727)
T ss_dssp             SSGGGGTTCSEEECCSS-CCCCCC--SSTTSCTTCCCEECTTSCCCS
T ss_pred             hhhcCCCCCCEEECCCC-CCCccC--hhhhcCCCccEEeCCCCccCC
Confidence            22345788999999985 555222  113568999999999998874

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=98.02  E-value=3e-07  Score=68.54  Aligned_cols=86  Identities=13%  Similarity=0.095  Sum_probs=42.9

Q ss_pred             HhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHH
Q 037671           52 VGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLY  131 (187)
Q Consensus        52 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  131 (187)
                      +..+++|+.|++++|    .++......+   ..+++|++|+++++. ++... ......+++|++|+++++.++.....
T Consensus        97 l~~l~~L~~L~Ls~n----~l~~~~p~~~---~~l~~L~~L~Ls~N~-l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~p~  167 (313)
T 1ogq_A           97 IAKLTQLHYLYITHT----NVSGAIPDFL---SQIKTLVTLDFSYNA-LSGTL-PPSISSLPNLVGITFDGNRISGAIPD  167 (313)
T ss_dssp             GGGCTTCSEEEEEEE----CCEEECCGGG---GGCTTCCEEECCSSE-EESCC-CGGGGGCTTCCEEECCSSCCEEECCG
T ss_pred             HhcCCCCCEEECcCC----eeCCcCCHHH---hCCCCCCEEeCCCCc-cCCcC-ChHHhcCCCCCeEECcCCcccCcCCH
Confidence            356778888888876    3332222222   235667777776553 32111 11123466666666666555422111


Q ss_pred             HHHhcCC-ccceeeccC
Q 037671          132 AIANSCP-QLKSIVLWS  147 (187)
Q Consensus       132 ~l~~~~~-~L~~L~l~~  147 (187)
                      .+.. ++ .|++|++++
T Consensus       168 ~l~~-l~~~L~~L~L~~  183 (313)
T 1ogq_A          168 SYGS-FSKLFTSMTISR  183 (313)
T ss_dssp             GGGC-CCTTCCEEECCS
T ss_pred             HHhh-hhhcCcEEECcC
Confidence            2222 33 555666555

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.00  E-value=2.4e-06  Score=69.72  Aligned_cols=89  Identities=12%  Similarity=0.096  Sum_probs=56.6

Q ss_pred             cCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHH-HHh-----cCCCCCEEEecCCCCCH
Q 037671           54 YAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQ-LIS-----RASSLQHLNIGGTFITD  127 (187)
Q Consensus        54 ~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~-----~~~~L~~L~l~~~~~~~  127 (187)
                      .+++|+.|++++|    .+.......+   ..+++|+.|+++++..++...+.. +..     .+++|+.|+++++.++ 
T Consensus       247 ~l~~L~~L~L~~n----~l~~~~p~~l---~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-  318 (636)
T 4eco_A          247 NLKDLTDVEVYNC----PNLTKLPTFL---KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-  318 (636)
T ss_dssp             GCTTCCEEEEECC----TTCSSCCTTT---TTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-
T ss_pred             ccCCCCEEEecCC----cCCccChHHH---hcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-
Confidence            6788999999976    3333322232   236889999998875355522222 222     2488999999987776 


Q ss_pred             HHHHH--HHhcCCccceeeccCCCCCc
Q 037671          128 ESLYA--IANSCPQLKSIVLWSCRQVT  152 (187)
Q Consensus       128 ~~~~~--l~~~~~~L~~L~l~~~~~~~  152 (187)
                       .+..  ....+++|++|+++++ .++
T Consensus       319 -~ip~~~~l~~l~~L~~L~L~~N-~l~  343 (636)
T 4eco_A          319 -TFPVETSLQKMKKLGMLECLYN-QLE  343 (636)
T ss_dssp             -SCCCHHHHTTCTTCCEEECCSC-CCE
T ss_pred             -ccCchhhhccCCCCCEEeCcCC-cCc
Confidence             2322  3345778888888775 443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=97.87  E-value=8e-07  Score=61.53  Aligned_cols=107  Identities=20%  Similarity=0.112  Sum_probs=69.0

Q ss_pred             ceeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCC
Q 037671           34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRAS  113 (187)
Q Consensus        34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  113 (187)
                      +.+.+.++.++.......+..+++|+.|++++|    .++......+   ...++|+.|+++++. ++..... ....++
T Consensus        32 ~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N----~l~~~~~~~~---~~l~~L~~L~Ls~N~-l~~~~~~-~~~~l~  102 (192)
T 1w8a_A           32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRN----QLTGIEPNAF---EGASHIQELQLGENK-IKEISNK-MFLGLH  102 (192)
T ss_dssp             SEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS----CCCCBCTTTT---TTCTTCCEEECCSCC-CCEECSS-SSTTCT
T ss_pred             CEEECCCCcCCccCCccccccCCCCCEEECCCC----CCCCcCHhHc---CCcccCCEEECCCCc-CCccCHH-HhcCCC
Confidence            456666666543222223567899999999987    4444322232   236899999999875 5543221 123579


Q ss_pred             CCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCC
Q 037671          114 SLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQ  150 (187)
Q Consensus       114 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~  150 (187)
                      +|+.|++++|.++..... ....+++|++|+++++.-
T Consensus       103 ~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l  138 (192)
T 1w8a_A          103 QLKTLNLYDNQISCVMPG-SFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             TCCEEECCSSCCCEECTT-SSTTCTTCCEEECTTCCB
T ss_pred             CCCEEECCCCcCCeeCHH-HhhcCCCCCEEEeCCCCc
Confidence            999999999877642111 124578899999988543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=97.83  E-value=2.6e-06  Score=57.81  Aligned_cols=59  Identities=15%  Similarity=0.191  Sum_probs=24.2

Q ss_pred             CCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHhcCCccceeeccC
Q 037671           86 ISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWS  147 (187)
Q Consensus        86 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~  147 (187)
                      .++|+.|+++++. ++...- .....+++|+.|++++|.++.-.- .....+++|++|++++
T Consensus        53 l~~L~~L~Ls~N~-l~~l~~-~~f~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~  111 (170)
T 3g39_A           53 LTQLTRLDLDNNQ-LTVLPA-GVFDKLTQLTQLSLNDNQLKSIPR-GAFDNLKSLTHIWLLN  111 (170)
T ss_dssp             CTTCSEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCS
T ss_pred             cccCCEEECCCCC-cCccCh-hhccCCCCCCEEECCCCccCEeCH-HHhcCCCCCCEEEeCC
Confidence            3555555555443 321110 111234555555555544432100 1122345555555554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.82  E-value=1.7e-05  Score=57.77  Aligned_cols=85  Identities=18%  Similarity=0.242  Sum_probs=54.3

Q ss_pred             ccCCCccEEEecCCCCCCH-HHHHHHHhcCCCCCEEEecCCCCCHH-HHHHHHhcCCccceeeccCCCCCcH------HH
Q 037671           84 KCISNLTSISLWGLTGITD-KGVVQLISRASSLQHLNIGGTFITDE-SLYAIANSCPQLKSIVLWSCRQVTG------NG  155 (187)
Q Consensus        84 ~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~~L~~L~l~~~~~~~~------~~  155 (187)
                      ..+++|+.|+|+++. ++. .++......+++|+.|+|++|.+++. .+..+. .+ .|++|++.++ .+..      ..
T Consensus       167 ~~l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~-~l-~L~~L~L~~N-pl~~~~~~~~~y  242 (267)
T 3rw6_A          167 ENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIK-GL-KLEELWLDGN-SLCDTFRDQSTY  242 (267)
T ss_dssp             HHCTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGT-TS-CCSEEECTTS-TTGGGCSSHHHH
T ss_pred             hhCCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcc-cC-CcceEEccCC-cCccccCcchhH
Confidence            457888888888775 433 23444555688888888888877753 232222 12 7888888875 4442      23


Q ss_pred             HHHHHhcCCCCcEEEee
Q 037671          156 LLFLVNKCGRLESINVW  172 (187)
Q Consensus       156 ~~~l~~~~~~L~~L~l~  172 (187)
                      ...+...+|+|+.||-.
T Consensus       243 ~~~il~~~P~L~~LDg~  259 (267)
T 3rw6_A          243 ISAIRERFPKLLRLDGH  259 (267)
T ss_dssp             HHHHHHHCTTCCEESSC
T ss_pred             HHHHHHHCcccCeECCc
Confidence            34566678888887643

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=97.80  E-value=4e-06  Score=58.10  Aligned_cols=105  Identities=13%  Similarity=0.082  Sum_probs=68.8

Q ss_pred             ceeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCC
Q 037671           34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRAS  113 (187)
Q Consensus        34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  113 (187)
                      +.+++.++.++.  +...+..+++|+.|++++|    .++.-....+   ...++|+.|+++++. ++..... ....++
T Consensus        34 ~~L~L~~n~i~~--ip~~~~~l~~L~~L~Ls~N----~i~~i~~~~f---~~l~~L~~L~Ls~N~-l~~i~~~-~f~~l~  102 (193)
T 2wfh_A           34 TELYLDGNQFTL--VPKELSNYKHLTLIDLSNN----RISTLSNQSF---SNMTQLLTLILSYNR-LRCIPPR-TFDGLK  102 (193)
T ss_dssp             CEEECCSSCCCS--CCGGGGGCTTCCEEECCSS----CCCCCCTTTT---TTCTTCCEEECCSSC-CCBCCTT-TTTTCT
T ss_pred             CEEECCCCcCch--hHHHhhcccCCCEEECCCC----cCCEeCHhHc---cCCCCCCEEECCCCc-cCEeCHH-HhCCCC
Confidence            456777776653  2234567899999999987    4443332222   236899999998875 5443221 224579


Q ss_pred             CCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCC
Q 037671          114 SLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQ  150 (187)
Q Consensus       114 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~  150 (187)
                      +|+.|++++|.++.-.. .....+++|+.|++++++-
T Consensus       103 ~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A          103 SLRLLSLHGNDISVVPE-GAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             TCCEEECCSSCCCBCCT-TTTTTCTTCCEEECCSSCE
T ss_pred             CCCEEECCCCCCCeeCh-hhhhcCccccEEEeCCCCe
Confidence            99999999987763111 1234578999999988543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=97.78  E-value=2.6e-06  Score=60.82  Aligned_cols=109  Identities=11%  Similarity=0.054  Sum_probs=71.7

Q ss_pred             CCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecC-CCCCHHHHHHHH
Q 037671           56 YSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGG-TFITDESLYAIA  134 (187)
Q Consensus        56 ~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~  134 (187)
                      +.++.|+++++    .++.-....+   ..+++|+.|+++++..++...-. ....+++|++|++++ +.++.-.. ...
T Consensus        31 ~~l~~L~l~~n----~l~~i~~~~~---~~l~~L~~L~l~~n~~l~~i~~~-~f~~l~~L~~L~l~~~n~l~~i~~-~~f  101 (239)
T 2xwt_C           31 PSTQTLKLIET----HLRTIPSHAF---SNLPNISRIYVSIDVTLQQLESH-SFYNLSKVTHIEIRNTRNLTYIDP-DAL  101 (239)
T ss_dssp             TTCCEEEEESC----CCSEECTTTT---TTCTTCCEEEEECCSSCCEECTT-TEESCTTCCEEEEEEETTCCEECT-TSE
T ss_pred             CcccEEEEeCC----cceEECHHHc---cCCCCCcEEeCCCCCCcceeCHh-HcCCCcCCcEEECCCCCCeeEcCH-HHh
Confidence            47999999976    4443322222   34789999999987423322111 224589999999998 77763211 123


Q ss_pred             hcCCccceeeccCCCCCcHHHHHHHHhcCCCCc---EEEeeCC-CCC
Q 037671          135 NSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLE---SINVWGT-RLP  177 (187)
Q Consensus       135 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~---~L~l~~~-~i~  177 (187)
                      ..+++|++|+++++ .++.-  .. ...+++|+   +|++++| .++
T Consensus       102 ~~l~~L~~L~l~~n-~l~~l--p~-~~~l~~L~~L~~L~l~~N~~l~  144 (239)
T 2xwt_C          102 KELPLLKFLGIFNT-GLKMF--PD-LTKVYSTDIFFILEITDNPYMT  144 (239)
T ss_dssp             ECCTTCCEEEEEEE-CCCSC--CC-CTTCCBCCSEEEEEEESCTTCC
T ss_pred             CCCCCCCEEeCCCC-CCccc--cc-cccccccccccEEECCCCcchh
Confidence            45889999999986 44432  12 34677887   9999999 765

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=97.73  E-value=1.1e-05  Score=65.09  Aligned_cols=29  Identities=14%  Similarity=0.264  Sum_probs=15.5

Q ss_pred             ceeeecccccCHHHHHHHHhcCCCCcEEEeeec
Q 037671           34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRS   66 (187)
Q Consensus        34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~   66 (187)
                      ..+++.++.++.  +..  ...++|+.|++++|
T Consensus        62 ~~L~Ls~n~L~~--lp~--~l~~~L~~L~Ls~N   90 (571)
T 3cvr_A           62 SELQLNRLNLSS--LPD--NLPPQITVLEITQN   90 (571)
T ss_dssp             SEEECCSSCCSC--CCS--CCCTTCSEEECCSS
T ss_pred             cEEEeCCCCCCc--cCH--hHcCCCCEEECcCC
Confidence            346666665542  111  12356777777765

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=97.70  E-value=5.2e-06  Score=56.54  Aligned_cols=59  Identities=14%  Similarity=0.240  Sum_probs=25.8

Q ss_pred             CCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHhcCCccceeeccC
Q 037671           86 ISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWS  147 (187)
Q Consensus        86 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~  147 (187)
                      .++|+.|+++++. ++...- .....+++|+.|++++|.++.-. ......+++|++|++++
T Consensus        56 l~~L~~L~Ls~N~-l~~i~~-~~~~~l~~L~~L~L~~N~l~~l~-~~~~~~l~~L~~L~L~~  114 (174)
T 2r9u_A           56 LVNLQQLYFNSNK-LTAIPT-GVFDKLTQLTQLDLNDNHLKSIP-RGAFDNLKSLTHIYLYN  114 (174)
T ss_dssp             CTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCSEEECCS
T ss_pred             CcCCCEEECCCCC-CCccCh-hHhCCcchhhEEECCCCccceeC-HHHhccccCCCEEEeCC
Confidence            4556666665543 332110 11123555666666655444210 01122355556666655

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=97.65  E-value=6.2e-06  Score=56.09  Aligned_cols=105  Identities=15%  Similarity=0.134  Sum_probs=67.1

Q ss_pred             ceeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCC
Q 037671           34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRAS  113 (187)
Q Consensus        34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  113 (187)
                      +.+++.++.++.. ....+..+++|+.|++++|    .++.-....+   ..+++|+.|+++++. ++.... .....++
T Consensus        31 ~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n----~l~~~~~~~~---~~l~~L~~L~l~~N~-l~~~~~-~~~~~l~  100 (177)
T 2o6r_A           31 TRLELESNKLQSL-PHGVFDKLTQLTKLSLSQN----QIQSLPDGVF---DKLTKLTILYLHENK-LQSLPN-GVFDKLT  100 (177)
T ss_dssp             SEEECCSSCCCCC-CTTTTTTCTTCSEEECCSS----CCCCCCTTTT---TTCTTCCEEECCSSC-CCCCCT-TTTTTCT
T ss_pred             cEEEeCCCcccEe-CHHHhcCcccccEEECCCC----cceEeChhHc---cCCCccCEEECCCCC-ccccCH-HHhhCCc
Confidence            4566766665521 1223456789999999976    4443222222   346899999998875 543211 1234579


Q ss_pred             CCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCC
Q 037671          114 SLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCR  149 (187)
Q Consensus       114 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~  149 (187)
                      +|+.|+++++.++.- ...+...+++|++|++++++
T Consensus       101 ~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~  135 (177)
T 2o6r_A          101 QLKELALDTNQLKSV-PDGIFDRLTSLQKIWLHTNP  135 (177)
T ss_dssp             TCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSSC
T ss_pred             ccCEEECcCCcceEe-CHHHhcCCcccCEEEecCCC
Confidence            999999999877631 11223558899999999864

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.65  E-value=0.00013  Score=53.04  Aligned_cols=89  Identities=17%  Similarity=0.203  Sum_probs=59.8

Q ss_pred             HHHHhcCCCCcEEEeeeccCCcccchh-hhhhhhhhccCCCccEEEecCCCCCCHH-HHHHHHhcCCCCCEEEecCCCCC
Q 037671           49 ARLVGYAYSLKELEISRSRWGCQITDN-GLYRMSFAKCISNLTSISLWGLTGITDK-GVVQLISRASSLQHLNIGGTFIT  126 (187)
Q Consensus        49 ~~~~~~~~~L~~L~l~~~~~~~~~~~~-~l~~l~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~  126 (187)
                      ......++.|+.|+|++|    .++.- ++...  ...+++|+.|+|+++. ++.. .+..+. .. +|+.|++.+|.+.
T Consensus       163 ~i~~~~l~~L~~L~Ls~N----~l~~l~~l~~~--~~~l~~L~~L~Ls~N~-i~~~~~l~~l~-~l-~L~~L~L~~Npl~  233 (267)
T 3rw6_A          163 RIIEENIPELLSLNLSNN----RLYRLDDMSSI--VQKAPNLKILNLSGNE-LKSERELDKIK-GL-KLEELWLDGNSLC  233 (267)
T ss_dssp             HHHHHHCTTCCEEECTTS----CCCCCGGGTTH--HHHSTTCCEEECTTSC-CCSGGGGGGGT-TS-CCSEEECTTSTTG
T ss_pred             HHHHhhCCCCCEEECCCC----CCCCCccchhH--HhhCCCCCEEECCCCc-cCCchhhhhcc-cC-CcceEEccCCcCc
Confidence            334456899999999987    44431 11111  1347999999999876 5543 332222 23 9999999998887


Q ss_pred             H------HHHHHHHhcCCccceeecc
Q 037671          127 D------ESLYAIANSCPQLKSIVLW  146 (187)
Q Consensus       127 ~------~~~~~l~~~~~~L~~L~l~  146 (187)
                      .      .....+...+|+|+.|+=.
T Consensus       234 ~~~~~~~~y~~~il~~~P~L~~LDg~  259 (267)
T 3rw6_A          234 DTFRDQSTYISAIRERFPKLLRLDGH  259 (267)
T ss_dssp             GGCSSHHHHHHHHHHHCTTCCEESSC
T ss_pred             cccCcchhHHHHHHHHCcccCeECCc
Confidence            4      3344567779999998753

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.58  E-value=7.7e-05  Score=55.78  Aligned_cols=33  Identities=27%  Similarity=0.349  Sum_probs=22.9

Q ss_pred             ceeeecccccCHHHHHHHHhcCCCCcEEEeeecc
Q 037671           34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRSR   67 (187)
Q Consensus        34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~   67 (187)
                      .++.+.+. +....+..+...+++|+.|||++|.
T Consensus        28 ~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~   60 (329)
T 3sb4_A           28 THLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAE   60 (329)
T ss_dssp             SEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEE
T ss_pred             eEEEEecc-ccHHHHHHHHHhhccCeEEecCcce
Confidence            44556553 5556666666658899999999873

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=97.52  E-value=3.2e-05  Score=62.32  Aligned_cols=89  Identities=12%  Similarity=0.014  Sum_probs=45.5

Q ss_pred             CCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHH-H-HHHHhcCCccceeeccCCCCCcHHHHHHHHhcC
Q 037671           86 ISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDES-L-YAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKC  163 (187)
Q Consensus        86 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~-~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~  163 (187)
                      +++|+.|+++++. ++.  +..+   .++|+.|++++|.++.-. + ..+....+.|+.|++++| .++.-. ..+. .+
T Consensus       159 l~~L~~L~Ls~N~-L~~--lp~l---~~~L~~L~Ls~N~L~~lp~~~~~L~~~~~~L~~L~Ls~N-~l~~lp-~~l~-~l  229 (571)
T 3cvr_A          159 PTSLEVLSVRNNQ-LTF--LPEL---PESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCREN-RITHIP-ENIL-SL  229 (571)
T ss_dssp             CTTCCEEECCSSC-CSC--CCCC---CTTCCEEECCSSCCSSCCCCC--------CCEEEECCSS-CCCCCC-GGGG-GS
T ss_pred             CCCcCEEECCCCC-CCC--cchh---hCCCCEEECcCCCCCchhhHHHhhhcccccceEEecCCC-cceecC-HHHh-cC
Confidence            3456666665553 332  1111   166777777776554100 0 011111222378888774 554321 1223 38


Q ss_pred             CCCcEEEeeCCCCCHHHHHh
Q 037671          164 GRLESINVWGTRLPLDCFIG  183 (187)
Q Consensus       164 ~~L~~L~l~~~~i~~~~~~~  183 (187)
                      ++|+.|++++|.++......
T Consensus       230 ~~L~~L~L~~N~l~~~~p~~  249 (571)
T 3cvr_A          230 DPTCTIILEDNPLSSRIRES  249 (571)
T ss_dssp             CTTEEEECCSSSCCHHHHHH
T ss_pred             CCCCEEEeeCCcCCCcCHHH
Confidence            89999999999888665443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=97.48  E-value=9.5e-05  Score=60.21  Aligned_cols=54  Identities=19%  Similarity=0.229  Sum_probs=28.5

Q ss_pred             CCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCC
Q 037671           56 YSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFIT  126 (187)
Q Consensus        56 ~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  126 (187)
                      ++|+.|++++|    .++.     +  ...+++|+.|+++++. ++.  +.   ...++|+.|++++|.++
T Consensus        61 ~~L~~L~L~~N----~l~~-----l--p~~l~~L~~L~Ls~N~-l~~--lp---~~l~~L~~L~Ls~N~l~  114 (622)
T 3g06_A           61 AHITTLVIPDN----NLTS-----L--PALPPELRTLEVSGNQ-LTS--LP---VLPPGLLELSIFSNPLT  114 (622)
T ss_dssp             TTCSEEEECSC----CCSC-----C--CCCCTTCCEEEECSCC-CSC--CC---CCCTTCCEEEECSCCCC
T ss_pred             CCCcEEEecCC----CCCC-----C--CCcCCCCCEEEcCCCc-CCc--CC---CCCCCCCEEECcCCcCC
Confidence            56777777765    3331     1  0124667777776654 332  11   13566666666665444

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=97.42  E-value=3.3e-05  Score=56.57  Aligned_cols=31  Identities=26%  Similarity=0.447  Sum_probs=26.5

Q ss_pred             CccccccchhHHHHHHHhhHHHHHHh-hhhhcc
Q 037671            1 FLFVFVIPFVCLLRVSSVCKKWKLGV-KQSLAR   32 (187)
Q Consensus         1 ~I~~~l~~~~~~~~~~~vck~w~~~~-~~~l~~   32 (187)
                      +||+||++ +|++++++|||+|+.++ .+.+|+
T Consensus        15 ~IlsfL~p-~DL~~l~~vcr~Wr~la~D~~LWr   46 (312)
T 3l2o_B           15 YILSFLSP-HDLCQLGSTNHYWNETVRDPILWR   46 (312)
T ss_dssp             HHHHTSCH-HHHHHHHTTCHHHHHHHTCHHHHH
T ss_pred             HHHhcCCH-HHHHHHHHHHHHHHHHhccchHHH
Confidence            58999995 99999999999999987 445554

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=97.29  E-value=0.00011  Score=57.50  Aligned_cols=15  Identities=20%  Similarity=0.005  Sum_probs=7.5

Q ss_pred             cCCCCcEEEeeCCCC
Q 037671          162 KCGRLESINVWGTRL  176 (187)
Q Consensus       162 ~~~~L~~L~l~~~~i  176 (187)
                      .+++|++|++++|.+
T Consensus       235 ~l~~L~~L~l~~N~l  249 (454)
T 1jl5_A          235 NLPFLTTIYADNNLL  249 (454)
T ss_dssp             TCTTCCEEECCSSCC
T ss_pred             CCCCCCEEECCCCcC
Confidence            344555555555544

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=97.29  E-value=7.4e-05  Score=50.74  Aligned_cols=88  Identities=14%  Similarity=0.073  Sum_probs=59.3

Q ss_pred             CCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCC
Q 037671           86 ISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGR  165 (187)
Q Consensus        86 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~  165 (187)
                      .++|+.|+++++. ++.... .....+++|+.|++++|.++.-. ..+...+++|++|+++++ .++...- .....+++
T Consensus        32 ~~~L~~L~Ls~N~-l~~~~~-~~~~~l~~L~~L~Ls~N~l~~i~-~~~~~~l~~L~~L~L~~N-~l~~l~~-~~~~~l~~  106 (174)
T 2r9u_A           32 PTDKQRLWLNNNQ-ITKLEP-GVFDHLVNLQQLYFNSNKLTAIP-TGVFDKLTQLTQLDLNDN-HLKSIPR-GAFDNLKS  106 (174)
T ss_dssp             CTTCSEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTT
T ss_pred             CCCCcEEEeCCCC-ccccCH-HHhcCCcCCCEEECCCCCCCccC-hhHhCCcchhhEEECCCC-ccceeCH-HHhccccC
Confidence            3779999998775 443211 22345889999999998776411 112346889999999884 6553221 22346899


Q ss_pred             CcEEEeeCCCCCH
Q 037671          166 LESINVWGTRLPL  178 (187)
Q Consensus       166 L~~L~l~~~~i~~  178 (187)
                      |+.|++++|.+.-
T Consensus       107 L~~L~L~~N~~~c  119 (174)
T 2r9u_A          107 LTHIYLYNNPWDC  119 (174)
T ss_dssp             CSEEECCSSCBCT
T ss_pred             CCEEEeCCCCccc
Confidence            9999999998763

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=97.26  E-value=0.00017  Score=56.54  Aligned_cols=14  Identities=7%  Similarity=0.157  Sum_probs=7.1

Q ss_pred             CCCCCEEEecCCCC
Q 037671          112 ASSLQHLNIGGTFI  125 (187)
Q Consensus       112 ~~~L~~L~l~~~~~  125 (187)
                      +++|+.|+++++.+
T Consensus       236 l~~L~~L~l~~N~l  249 (454)
T 1jl5_A          236 LPFLTTIYADNNLL  249 (454)
T ss_dssp             CTTCCEEECCSSCC
T ss_pred             CCCCCEEECCCCcC
Confidence            45555555555443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=97.22  E-value=4.8e-05  Score=63.07  Aligned_cols=86  Identities=19%  Similarity=0.175  Sum_probs=59.5

Q ss_pred             ccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcC
Q 037671           84 KCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKC  163 (187)
Q Consensus        84 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~  163 (187)
                      ...++|+.|+++++. +..  +..-...+++|+.|+|++|.++  .+-.-...+++|+.|+|+++ .++.  +..-...+
T Consensus       221 ~~l~~L~~L~Ls~n~-l~~--l~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N-~l~~--lp~~~~~l  292 (727)
T 4b8c_D          221 YDDQLWHALDLSNLQ-IFN--ISANIFKYDFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHN-RLTS--LPAELGSC  292 (727)
T ss_dssp             -CCCCCCEEECTTSC-CSC--CCGGGGGCCSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTS-CCSS--CCSSGGGG
T ss_pred             ccCCCCcEEECCCCC-CCC--CChhhcCCCCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCC-cCCc--cChhhcCC
Confidence            346889999998875 432  1111225899999999998877  22222356889999999985 5652  22223468


Q ss_pred             CCCcEEEeeCCCCC
Q 037671          164 GRLESINVWGTRLP  177 (187)
Q Consensus       164 ~~L~~L~l~~~~i~  177 (187)
                      ++|++|+|++|.++
T Consensus       293 ~~L~~L~L~~N~l~  306 (727)
T 4b8c_D          293 FQLKYFYFFDNMVT  306 (727)
T ss_dssp             TTCSEEECCSSCCC
T ss_pred             CCCCEEECCCCCCC
Confidence            99999999999775

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=97.19  E-value=9.1e-05  Score=50.06  Aligned_cols=89  Identities=15%  Similarity=0.104  Sum_probs=59.6

Q ss_pred             CCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCC
Q 037671           86 ISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGR  165 (187)
Q Consensus        86 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~  165 (187)
                      .++|+.|+++++. ++...- .....+++|+.|++++|.++.-. ......+++|++|+++++ .++...- .....+++
T Consensus        29 ~~~l~~L~L~~N~-i~~~~~-~~~~~l~~L~~L~Ls~N~l~~l~-~~~f~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~  103 (170)
T 3g39_A           29 PTTTQVLYLYDNQ-ITKLEP-GVFDRLTQLTRLDLDNNQLTVLP-AGVFDKLTQLTQLSLNDN-QLKSIPR-GAFDNLKS  103 (170)
T ss_dssp             CTTCSEEECCSSC-CCCCCT-TTTTTCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTT
T ss_pred             CCCCcEEEcCCCc-CCccCh-hhhcCcccCCEEECCCCCcCccC-hhhccCCCCCCEEECCCC-ccCEeCH-HHhcCCCC
Confidence            4778999998775 443211 12245789999999998776311 122356889999999884 5553321 22346889


Q ss_pred             CcEEEeeCCCCCHH
Q 037671          166 LESINVWGTRLPLD  179 (187)
Q Consensus       166 L~~L~l~~~~i~~~  179 (187)
                      |+.|++++|.++-.
T Consensus       104 L~~L~L~~N~~~c~  117 (170)
T 3g39_A          104 LTHIWLLNNPWDCA  117 (170)
T ss_dssp             CCEEECCSSCBCTT
T ss_pred             CCEEEeCCCCCCCC
Confidence            99999999987643

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.17  E-value=0.00018  Score=53.79  Aligned_cols=21  Identities=24%  Similarity=0.343  Sum_probs=10.7

Q ss_pred             HHHHHHHHhcCCCCcEEEeee
Q 037671           45 DDSTARLVGYAYSLKELEISR   65 (187)
Q Consensus        45 ~~~~~~~~~~~~~L~~L~l~~   65 (187)
                      ......+..++++|+.+++++
T Consensus       215 ~~~~~~l~~~~~~L~~l~L~~  235 (329)
T 3sb4_A          215 NADFKLIRDYMPNLVSLDISK  235 (329)
T ss_dssp             HHHHHHHHHHCTTCCEEECTT
T ss_pred             HHHHHHHHHhcCCCeEEECCC
Confidence            333444444555666666654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=97.10  E-value=2.6e-05  Score=58.88  Aligned_cols=62  Identities=13%  Similarity=-0.004  Sum_probs=39.0

Q ss_pred             CCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCC
Q 037671          113 SSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLP  177 (187)
Q Consensus       113 ~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~  177 (187)
                      ..++.|+++++.++.  +..-+.....++++++.+++.++.-.- ..+..+++|+.|++++|.++
T Consensus       154 ~~l~~L~L~~N~i~~--i~~~~f~~~~L~~l~l~~~n~l~~i~~-~~f~~l~~L~~LdLs~N~l~  215 (350)
T 4ay9_X          154 FESVILWLNKNGIQE--IHNSAFNGTQLDELNLSDNNNLEELPN-DVFHGASGPVILDISRTRIH  215 (350)
T ss_dssp             SSCEEEECCSSCCCE--ECTTSSTTEEEEEEECTTCTTCCCCCT-TTTTTEECCSEEECTTSCCC
T ss_pred             hhhhhhccccccccC--CChhhccccchhHHhhccCCcccCCCH-HHhccCcccchhhcCCCCcC
Confidence            457888888876652  111112245688888877666554331 22356788999999998664

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=97.00  E-value=8.7e-05  Score=55.78  Aligned_cols=86  Identities=16%  Similarity=0.174  Sum_probs=44.8

Q ss_pred             HhcCCCCcEEEeee-ccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHH
Q 037671           52 VGYAYSLKELEISR-SRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESL  130 (187)
Q Consensus        52 ~~~~~~L~~L~l~~-~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  130 (187)
                      +..+.+|+.|+|++ |    .++.-....+   ..+++|+.|+|+++. ++...- ..+..+++|+.|+|++|.++.-. 
T Consensus        27 l~~~~~L~~L~l~~~n----~l~~~~~~~~---~~l~~L~~L~l~~N~-l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~-   96 (347)
T 2ifg_A           27 LPGAENLTELYIENQQ----HLQHLELRDL---RGLGELRNLTIVKSG-LRFVAP-DAFHFTPRLSRLNLSFNALESLS-   96 (347)
T ss_dssp             SCSCSCCSEEECCSCS----SCCEECGGGS---CSCCCCSEEECCSSC-CCEECT-TGGGSCSCCCEEECCSSCCSCCC-
T ss_pred             CCCCCCeeEEEccCCC----CCCCcChhHh---ccccCCCEEECCCCc-cceeCH-HHhcCCcCCCEEeCCCCccceeC-
Confidence            44556688888874 4    2322221111   235777888887664 443211 12244677777777776654210 


Q ss_pred             HHHHhcCCccceeeccCC
Q 037671          131 YAIANSCPQLKSIVLWSC  148 (187)
Q Consensus       131 ~~l~~~~~~L~~L~l~~~  148 (187)
                      ..+...++ |+.|++.++
T Consensus        97 ~~~~~~~~-L~~l~l~~N  113 (347)
T 2ifg_A           97 WKTVQGLS-LQELVLSGN  113 (347)
T ss_dssp             STTTCSCC-CCEEECCSS
T ss_pred             HHHcccCC-ceEEEeeCC
Confidence            01122233 777777664

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=96.87  E-value=0.0002  Score=52.65  Aligned_cols=32  Identities=22%  Similarity=0.214  Sum_probs=26.8

Q ss_pred             CccccccchhHHH-HHHHhhHHHHHHh-hhhhccc
Q 037671            1 FLFVFVIPFVCLL-RVSSVCKKWKLGV-KQSLARR   33 (187)
Q Consensus         1 ~I~~~l~~~~~~~-~~~~vck~w~~~~-~~~l~~~   33 (187)
                      .||+|||. ++++ +|++|||+|+.++ .+.+|++
T Consensus        61 ~Il~~Lp~-~~L~~r~~~VCk~Wr~l~~~~~~w~~   94 (297)
T 2e31_A           61 RVLAELPA-TELVQACRLVCLRWKELVDGAPLWLL   94 (297)
T ss_dssp             HHHHTSCH-HHHHHTGGGTCHHHHHHHTSHHHHHH
T ss_pred             HHHHcCCH-HHHHHHHHHHhHHHHHHhcChHHHHH
Confidence            38999995 9999 9999999999977 4466654

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=96.75  E-value=0.00045  Score=53.26  Aligned_cols=32  Identities=19%  Similarity=0.312  Sum_probs=27.1

Q ss_pred             CccccccchhHHHHHHHhhHHHHHHh-hhhhccc
Q 037671            1 FLFVFVIPFVCLLRVSSVCKKWKLGV-KQSLARR   33 (187)
Q Consensus         1 ~I~~~l~~~~~~~~~~~vck~w~~~~-~~~l~~~   33 (187)
                      +||+||+ .++++++++|||+|++++ .+.+|+.
T Consensus        25 ~i~~~l~-~~~l~~~~~v~~~w~~~~~~~~~w~~   57 (435)
T 1p22_A           25 NILSYLD-AKSLCAAELVCKEWYRVTSDGMLWKK   57 (435)
T ss_dssp             HHHTTCC-HHHHHHHHHHCHHHHHHHHHTTHHHH
T ss_pred             HHHhcCC-HHHHHHHHHHHHHHHHHhcChHHHHH
Confidence            4899999 599999999999999976 5566654

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=96.72  E-value=0.00044  Score=53.55  Aligned_cols=32  Identities=22%  Similarity=0.448  Sum_probs=27.7

Q ss_pred             CccccccchhHHHHHHHhhHHHHHHh-h-hhhccc
Q 037671            1 FLFVFVIPFVCLLRVSSVCKKWKLGV-K-QSLARR   33 (187)
Q Consensus         1 ~I~~~l~~~~~~~~~~~vck~w~~~~-~-~~l~~~   33 (187)
                      +||+||+ .++++++++|||+|++++ . +.+|+.
T Consensus        25 ~i~~~l~-~~~l~~~~~v~~~w~~~~~~~~~~w~~   58 (464)
T 3v7d_B           25 KIFNYLQ-FEDIINSLGVSQNWNKIIRKSTSLWKK   58 (464)
T ss_dssp             HHHTTSC-HHHHHHHHTTCHHHHHHHTTCHHHHHH
T ss_pred             HHHhcCC-HHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            4899999 599999999999999977 4 577765

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=96.36  E-value=0.0012  Score=49.51  Aligned_cols=87  Identities=15%  Similarity=0.079  Sum_probs=51.9

Q ss_pred             CCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCC
Q 037671           86 ISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGR  165 (187)
Q Consensus        86 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~  165 (187)
                      .++|+.|+|++.+.++...-. .+..+++|+.|+|++|.++.-.- .....+++|+.|+|+++ .++... ..++...+ 
T Consensus        30 ~~~L~~L~l~~~n~l~~~~~~-~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~N-~l~~~~-~~~~~~~~-  104 (347)
T 2ifg_A           30 AENLTELYIENQQHLQHLELR-DLRGLGELRNLTIVKSGLRFVAP-DAFHFTPRLSRLNLSFN-ALESLS-WKTVQGLS-  104 (347)
T ss_dssp             CSCCSEEECCSCSSCCEECGG-GSCSCCCCSEEECCSSCCCEECT-TGGGSCSCCCEEECCSS-CCSCCC-STTTCSCC-
T ss_pred             CCCeeEEEccCCCCCCCcChh-HhccccCCCEEECCCCccceeCH-HHhcCCcCCCEEeCCCC-ccceeC-HHHcccCC-
Confidence            567888888752334432211 12357888888888877664211 12345788888888874 554322 11222233 


Q ss_pred             CcEEEeeCCCCC
Q 037671          166 LESINVWGTRLP  177 (187)
Q Consensus       166 L~~L~l~~~~i~  177 (187)
                      |+.|++.+|.+.
T Consensus       105 L~~l~l~~N~~~  116 (347)
T 2ifg_A          105 LQELVLSGNPLH  116 (347)
T ss_dssp             CCEEECCSSCCC
T ss_pred             ceEEEeeCCCcc
Confidence            888888888775

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=96.29  E-value=0.00018  Score=54.31  Aligned_cols=108  Identities=7%  Similarity=-0.007  Sum_probs=58.6

Q ss_pred             CCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEE-EecCCCCCHHHHHHHH
Q 037671           56 YSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHL-NIGGTFITDESLYAIA  134 (187)
Q Consensus        56 ~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L-~l~~~~~~~~~~~~l~  134 (187)
                      +++++|++++|    .++.-....+   ..+++|+.|+++++. +....-......+++++.+ .++++.++.-. ....
T Consensus        30 ~~l~~L~Ls~N----~i~~i~~~~f---~~l~~L~~L~Ls~N~-i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~-~~~f  100 (350)
T 4ay9_X           30 RNAIELRFVLT----KLRVIQKGAF---SGFGDLEKIEISQND-VLEVIEADVFSNLPKLHEIRIEKANNLLYIN-PEAF  100 (350)
T ss_dssp             TTCSEEEEESC----CCSEECTTSS---TTCTTCCEEEEECCT-TCCEECTTSBCSCTTCCEEEEEEETTCCEEC-TTSB
T ss_pred             CCCCEEEccCC----cCCCcCHHHH---cCCCCCCEEECcCCC-CCCccChhHhhcchhhhhhhcccCCcccccC-chhh
Confidence            57999999977    3432211111   236889999998875 3221000112345666654 44445554210 0123


Q ss_pred             hcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCC
Q 037671          135 NSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGT  174 (187)
Q Consensus       135 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~  174 (187)
                      ..+++|++|+++++ .++...-.. .....++..|++.++
T Consensus       101 ~~l~~L~~L~l~~n-~l~~~~~~~-~~~~~~l~~l~l~~~  138 (350)
T 4ay9_X          101 QNLPNLQYLLISNT-GIKHLPDVH-KIHSLQKVLLDIQDN  138 (350)
T ss_dssp             CCCTTCCEEEEEEE-CCSSCCCCT-TCCBSSCEEEEEESC
T ss_pred             hhcccccccccccc-ccccCCchh-hcccchhhhhhhccc
Confidence            56788999999885 443222111 112456778888764

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=95.98  E-value=0.0015  Score=50.45  Aligned_cols=32  Identities=22%  Similarity=0.511  Sum_probs=26.8

Q ss_pred             CccccccchhHHHHHHHhhHHHHHHhh-hhhccc
Q 037671            1 FLFVFVIPFVCLLRVSSVCKKWKLGVK-QSLARR   33 (187)
Q Consensus         1 ~I~~~l~~~~~~~~~~~vck~w~~~~~-~~l~~~   33 (187)
                      +||+||+ .++++++++|||+|++++. +.+|+.
T Consensus        29 ~i~~~l~-~~~l~~~~~v~~~~~~~~~~~~~w~~   61 (445)
T 2ovr_B           29 YVLSFLE-PKDLLQAAQTCRYWRILAEDNLLWRE   61 (445)
T ss_dssp             HHHTTSC-HHHHHHHTTSCHHHHHHHTCSHHHHH
T ss_pred             HHHHhCC-HHHHHHHHHHhHHHHhhcCchhHhhh
Confidence            4899999 5999999999999999774 456654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=94.76  E-value=0.028  Score=42.86  Aligned_cols=103  Identities=22%  Similarity=0.266  Sum_probs=50.7

Q ss_pred             hcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCC-CCCCHHHHHHHHhcCCCCCEEEecC--CCCCHHH
Q 037671           53 GYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGL-TGITDKGVVQLISRASSLQHLNIGG--TFITDES  129 (187)
Q Consensus        53 ~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~L~~L~l~~--~~~~~~~  129 (187)
                      ..|..|+.+.+....  ..+.+...      ..|+.|+.+.++.. ..+++..    ...|.+|+.+.+..  ..+.+..
T Consensus       262 ~~c~~L~~i~lp~~~--~~I~~~aF------~~c~~L~~i~l~~~i~~I~~~a----F~~c~~L~~i~lp~~v~~I~~~a  329 (394)
T 4gt6_A          262 DSCAYLASVKMPDSV--VSIGTGAF------MNCPALQDIEFSSRITELPESV----FAGCISLKSIDIPEGITQILDDA  329 (394)
T ss_dssp             TTCSSCCEEECCTTC--CEECTTTT------TTCTTCCEEECCTTCCEECTTT----TTTCTTCCEEECCTTCCEECTTT
T ss_pred             eecccccEEeccccc--ceecCccc------ccccccccccCCCcccccCcee----ecCCCCcCEEEeCCcccEehHhH
Confidence            445667777665321  11222111      23666777776432 1122222    23467777777755  2333322


Q ss_pred             HHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCC
Q 037671          130 LYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGT  174 (187)
Q Consensus       130 ~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~  174 (187)
                          ...|.+|+++.+..  .++.-+-. -+.+|++|+.+++.++
T Consensus       330 ----F~~C~~L~~i~ip~--sv~~I~~~-aF~~C~~L~~i~~~~~  367 (394)
T 4gt6_A          330 ----FAGCEQLERIAIPS--SVTKIPES-AFSNCTALNNIEYSGS  367 (394)
T ss_dssp             ----TTTCTTCCEEEECT--TCCBCCGG-GGTTCTTCCEEEESSC
T ss_pred             ----hhCCCCCCEEEECc--ccCEEhHh-HhhCCCCCCEEEECCc
Confidence                24567777777743  22222211 1346777777777665

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=93.24  E-value=0.068  Score=40.74  Aligned_cols=104  Identities=17%  Similarity=0.209  Sum_probs=59.3

Q ss_pred             HhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCC-CCCCHHHHHHHHhcCCCCCEEEecC--CCCCHH
Q 037671           52 VGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGL-TGITDKGVVQLISRASSLQHLNIGG--TFITDE  128 (187)
Q Consensus        52 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~L~~L~l~~--~~~~~~  128 (187)
                      +..++.|+.+.+....  ..+.+..+      ..|.+|+.++++.. ..+.+.+    ...|.+|+.+.+..  ..+.+.
T Consensus       284 F~~c~~L~~i~l~~~i--~~I~~~aF------~~c~~L~~i~lp~~v~~I~~~a----F~~C~~L~~i~ip~sv~~I~~~  351 (394)
T 4gt6_A          284 FMNCPALQDIEFSSRI--TELPESVF------AGCISLKSIDIPEGITQILDDA----FAGCEQLERIAIPSSVTKIPES  351 (394)
T ss_dssp             TTTCTTCCEEECCTTC--CEECTTTT------TTCTTCCEEECCTTCCEECTTT----TTTCTTCCEEEECTTCCBCCGG
T ss_pred             cccccccccccCCCcc--cccCceee------cCCCCcCEEEeCCcccEehHhH----hhCCCCCCEEEECcccCEEhHh
Confidence            3457889999886421  12333332      34899999999643 2233332    24689999999976  355553


Q ss_pred             HHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCC
Q 037671          129 SLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRL  176 (187)
Q Consensus       129 ~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i  176 (187)
                      +    ...|++|+.+++.+. .   ..... ...|..|+.+.+..+.+
T Consensus       352 a----F~~C~~L~~i~~~~~-~---~~~~~-~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          352 A----FSNCTALNNIEYSGS-R---SQWNA-ISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             G----GTTCTTCCEEEESSC-H---HHHHT-CBCCCCC----------
T ss_pred             H----hhCCCCCCEEEECCc-e---eehhh-hhccCCCCEEEeCCCCE
Confidence            3    356999999999863 1   12222 34688899998876543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=92.83  E-value=0.062  Score=41.29  Aligned_cols=57  Identities=14%  Similarity=0.216  Sum_probs=28.5

Q ss_pred             cCCCCCEEEecC--CCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCC
Q 037671          111 RASSLQHLNIGG--TFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTR  175 (187)
Q Consensus       111 ~~~~L~~L~l~~--~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~  175 (187)
                      .|++|+.+.+..  ..+.+.    ...+|+.|+.+.+..  .++.-+-.+ +.+| +|+.+++.++.
T Consensus       298 ~c~~L~~l~l~~~i~~I~~~----aF~~c~~L~~l~lp~--~l~~I~~~a-F~~~-~L~~l~l~~n~  356 (401)
T 4fdw_A          298 GCPKLARFEIPESIRILGQG----LLGGNRKVTQLTIPA--NVTQINFSA-FNNT-GIKEVKVEGTT  356 (401)
T ss_dssp             TCTTCCEECCCTTCCEECTT----TTTTCCSCCEEEECT--TCCEECTTS-SSSS-CCCEEEECCSS
T ss_pred             CCccCCeEEeCCceEEEhhh----hhcCCCCccEEEECc--cccEEcHHh-CCCC-CCCEEEEcCCC
Confidence            456666666654  122221    123466677776643  233222111 2356 77777777664

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=92.45  E-value=0.03  Score=43.05  Aligned_cols=13  Identities=38%  Similarity=0.784  Sum_probs=7.8

Q ss_pred             hcCCCCcEEEeee
Q 037671           53 GYAYSLKELEISR   65 (187)
Q Consensus        53 ~~~~~L~~L~l~~   65 (187)
                      ..|++|+.+++..
T Consensus       177 ~~c~~L~~l~l~~  189 (401)
T 4fdw_A          177 YYCYNLKKADLSK  189 (401)
T ss_dssp             TTCTTCCEEECTT
T ss_pred             hCcccCCeeecCC
Confidence            3456666666654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=90.04  E-value=0.038  Score=41.78  Aligned_cols=79  Identities=15%  Similarity=0.257  Sum_probs=40.6

Q ss_pred             CCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCC---CCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhc
Q 037671           86 ISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTF---ITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNK  162 (187)
Q Consensus        86 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~---~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~  162 (187)
                      |.+|+.+.++..  +...+- .....|.+|+.+.+.++.   +.+.    ....|.+|+.+.+..  .++.-+-.+ +.+
T Consensus       262 ~~~l~~i~l~~~--i~~i~~-~aF~~c~~L~~i~l~~~~i~~I~~~----aF~~c~~L~~i~lp~--~l~~I~~~a-F~~  331 (379)
T 4h09_A          262 CTALKTLNFYAK--VKTVPY-LLCSGCSNLTKVVMDNSAIETLEPR----VFMDCVKLSSVTLPT--ALKTIQVYA-FKN  331 (379)
T ss_dssp             CTTCCEEEECCC--CSEECT-TTTTTCTTCCEEEECCTTCCEECTT----TTTTCTTCCEEECCT--TCCEECTTT-TTT
T ss_pred             eehhcccccccc--ceeccc-cccccccccccccccccccceehhh----hhcCCCCCCEEEcCc--cccEEHHHH-hhC
Confidence            556666666432  211111 112346778888776543   3332    224577788888753  232222111 346


Q ss_pred             CCCCcEEEeeCC
Q 037671          163 CGRLESINVWGT  174 (187)
Q Consensus       163 ~~~L~~L~l~~~  174 (187)
                      |++|+++.+..+
T Consensus       332 C~~L~~i~ip~~  343 (379)
T 4h09_A          332 CKALSTISYPKS  343 (379)
T ss_dssp             CTTCCCCCCCTT
T ss_pred             CCCCCEEEECCc
Confidence            777777777543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=88.91  E-value=0.061  Score=40.99  Aligned_cols=79  Identities=19%  Similarity=0.204  Sum_probs=45.3

Q ss_pred             cCCCccEEEecCC-CCCCHHHHHHHHhcCCCCCEEEecC--CCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHh
Q 037671           85 CISNLTSISLWGL-TGITDKGVVQLISRASSLQHLNIGG--TFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVN  161 (187)
Q Consensus        85 ~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~L~~L~l~~--~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~  161 (187)
                      .|.+|+.+.++.. ..+.+.+    ...|.+|+.+++..  ..+.+.+    ...|.+|+.+.+...  ++.-+-. .+.
T Consensus       295 ~~~~L~~i~l~~~i~~I~~~a----F~~c~~L~~i~lp~~v~~I~~~a----F~~c~~L~~i~lp~~--l~~I~~~-aF~  363 (394)
T 4fs7_A          295 GCSSLTEVKLLDSVKFIGEEA----FESCTSLVSIDLPYLVEEIGKRS----FRGCTSLSNINFPLS--LRKIGAN-AFQ  363 (394)
T ss_dssp             TCTTCCEEEECTTCCEECTTT----TTTCTTCCEECCCTTCCEECTTT----TTTCTTCCEECCCTT--CCEECTT-TBT
T ss_pred             ccccccccccccccceechhh----hcCCCCCCEEEeCCcccEEhHHh----ccCCCCCCEEEECcc--ccEehHH-Hhh
Confidence            4677888887532 1222222    23477888888865  2333322    245778888888642  3322211 235


Q ss_pred             cCCCCcEEEeeCC
Q 037671          162 KCGRLESINVWGT  174 (187)
Q Consensus       162 ~~~~L~~L~l~~~  174 (187)
                      +|++|+.+++..+
T Consensus       364 ~C~~L~~i~lp~~  376 (394)
T 4fs7_A          364 GCINLKKVELPKR  376 (394)
T ss_dssp             TCTTCCEEEEEGG
T ss_pred             CCCCCCEEEECCC
Confidence            6888888888654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=87.70  E-value=0.18  Score=38.40  Aligned_cols=31  Identities=26%  Similarity=0.323  Sum_probs=14.2

Q ss_pred             CCCCCEEEecCC--CCCHHHHHHHHhcCCccceeecc
Q 037671          112 ASSLQHLNIGGT--FITDESLYAIANSCPQLKSIVLW  146 (187)
Q Consensus       112 ~~~L~~L~l~~~--~~~~~~~~~l~~~~~~L~~L~l~  146 (187)
                      |.+|+.+.+..+  .+.+..    ...|++|+++++.
T Consensus       342 c~~L~~i~lp~~l~~I~~~a----F~~C~~L~~i~lp  374 (394)
T 4fs7_A          342 CTSLSNINFPLSLRKIGANA----FQGCINLKKVELP  374 (394)
T ss_dssp             CTTCCEECCCTTCCEECTTT----BTTCTTCCEEEEE
T ss_pred             CCCCCEEEECccccEehHHH----hhCCCCCCEEEEC
Confidence            555555555441  222211    2345555555554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=84.40  E-value=0.31  Score=36.74  Aligned_cols=89  Identities=17%  Similarity=0.279  Sum_probs=53.7

Q ss_pred             ccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecC--CCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHh
Q 037671           84 KCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGG--TFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVN  161 (187)
Q Consensus        84 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~--~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~  161 (187)
                      ..|..|+.+.++..  ++..+-. ....|.+|+.+.+..  ..+..    .....|++|+++.+..+ .++.-+- ..+.
T Consensus       237 ~~~~~L~~i~lp~~--v~~I~~~-aF~~~~~l~~i~l~~~i~~i~~----~aF~~c~~L~~i~l~~~-~i~~I~~-~aF~  307 (379)
T 4h09_A          237 YGMKALDEIAIPKN--VTSIGSF-LLQNCTALKTLNFYAKVKTVPY----LLCSGCSNLTKVVMDNS-AIETLEP-RVFM  307 (379)
T ss_dssp             TTCSSCCEEEECTT--CCEECTT-TTTTCTTCCEEEECCCCSEECT----TTTTTCTTCCEEEECCT-TCCEECT-TTTT
T ss_pred             cCCccceEEEcCCC--ccEeCcc-ccceeehhccccccccceeccc----ccccccccccccccccc-ccceehh-hhhc
Confidence            34778888888643  2221111 223578899999876  23333    22356899999999753 3332221 1245


Q ss_pred             cCCCCcEEEeeCC--CCCHHHH
Q 037671          162 KCGRLESINVWGT--RLPLDCF  181 (187)
Q Consensus       162 ~~~~L~~L~l~~~--~i~~~~~  181 (187)
                      +|.+|+.+.+..+  .|.+.++
T Consensus       308 ~c~~L~~i~lp~~l~~I~~~aF  329 (379)
T 4h09_A          308 DCVKLSSVTLPTALKTIQVYAF  329 (379)
T ss_dssp             TCTTCCEEECCTTCCEECTTTT
T ss_pred             CCCCCCEEEcCccccEEHHHHh
Confidence            7999999999764  4444443

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=81.33  E-value=0.74  Score=29.22  Aligned_cols=37  Identities=16%  Similarity=0.164  Sum_probs=23.4

Q ss_pred             CCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCC
Q 037671          113 SSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQ  150 (187)
Q Consensus       113 ~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~  150 (187)
                      ++|+.|+|++|.++.-. ......++.|++|+|.+++-
T Consensus        31 ~~l~~L~Ls~N~l~~l~-~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           31 VDTTELVLTGNNLTALP-PGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             TTCSEEECTTSCCSSCC-TTTGGGCTTCCEEECCSSCC
T ss_pred             cCCCEEECCCCcCCccC-hhhhhhccccCEEEecCCCe
Confidence            46888888887655311 12234577888888877543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	187
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.004

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 4e-04
 Identities = 12/93 (12%), Positives = 36/93 (38%), Gaps = 9/93 (9%)

Query: 88  NLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIAN---SCPQLKSIV 144
           ++ S+ +     ++D    +L+      Q + +    +T+     I++     P L  + 
Sbjct: 3   DIQSLDIQC-EELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 145 LWSCRQVTGNGLL----FLVNKCGRLESINVWG 173
           L S  ++   G+      L     +++ +++  
Sbjct: 62  LRSN-ELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (80), Expect = 0.002
 Identities = 20/96 (20%), Positives = 40/96 (41%), Gaps = 15/96 (15%)

Query: 57  SLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTG--ITDKGVVQLIS---- 110
            L+ L ++     C ++D+     S A  +    S+    L+   + D G++QL+     
Sbjct: 370 VLRVLWLA----DCDVSDSSC--SSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ 423

Query: 111 RASSLQHLNIGGTFITDES---LYAIANSCPQLKSI 143
               L+ L +   + ++E    L A+    P L+ I
Sbjct: 424 PGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.7 bits (78), Expect = 0.004
 Identities = 19/86 (22%), Positives = 40/86 (46%), Gaps = 2/86 (2%)

Query: 87  SNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLW 146
             +  + L   + I    +  ++S+ S LQ+L++ G  ++D  +  +A     L  + L 
Sbjct: 46  FRVQHMDLSN-SVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK-NSNLVRLNLS 103

Query: 147 SCRQVTGNGLLFLVNKCGRLESINVW 172
            C   +   L  L++ C RL+ +N+ 
Sbjct: 104 GCSGFSEFALQTLLSSCSRLDELNLS 129

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	187
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.81
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.79
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.45
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.44
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.41
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.37
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	99.35
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	99.32
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	99.26
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	99.15
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.85
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.68
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	98.68
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.67
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.62
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.51
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.42
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.42
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.32
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.22
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.14
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.12
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.05
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.01
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	97.98
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	97.94
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	97.91
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	97.89
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	97.83
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.82
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	97.82
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	97.81
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.81
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.8
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	97.71
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	97.67
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	97.64
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	97.61
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	97.24
d2ifga3	156	High affinity nerve growth factor receptor, N-term	97.18
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	96.95
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	96.8
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	96.72
d2ifga3	156	High affinity nerve growth factor receptor, N-term	96.6
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	96.48
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	96.23

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=5.4e-19  Score=129.08  Aligned_cols=145  Identities=19%  Similarity=0.328  Sum_probs=103.8

Q ss_pred             ceeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCC
Q 037671           34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRAS  113 (187)
Q Consensus        34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  113 (187)
                      ++++++++.+++..+..+...+++|++|++++    +.+++.++..++   .+++|++|++++|..+++.++..+.+.++
T Consensus        49 ~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~----~~l~~~~~~~l~---~~~~L~~L~Ls~c~~itd~~l~~l~~~~~  121 (284)
T d2astb2          49 QHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG----LRLSDPIVNTLA---KNSNLVRLNLSGCSGFSEFALQTLLSSCS  121 (284)
T ss_dssp             CEEECTTCEECHHHHHHHHTTBCCCSEEECTT----CBCCHHHHHHHT---TCTTCSEEECTTCBSCCHHHHHHHHHHCT
T ss_pred             CEEECCCCccCHHHHHHHHHhCCCcccccccc----cCCCcHHHHHHh---cCCCCcCccccccccccccccchhhHHHH
Confidence            45677777778777888888888888888874    367777776652   36778888887777777777777777777


Q ss_pred             CCCEEEecC-CCCCHHHHHH-HHhcCCccceeeccCC-CCCcHHHHHHHHhcCCCCcEEEeeCC-CCCHHHHHhhh
Q 037671          114 SLQHLNIGG-TFITDESLYA-IANSCPQLKSIVLWSC-RQVTGNGLLFLVNKCGRLESINVWGT-RLPLDCFIGLL  185 (187)
Q Consensus       114 ~L~~L~l~~-~~~~~~~~~~-l~~~~~~L~~L~l~~~-~~~~~~~~~~l~~~~~~L~~L~l~~~-~i~~~~~~~L~  185 (187)
                      +|++|++++ ..++++++.. +...++.|++|++++| ..+++.++..++..||+|++|++++| .++++++..+.
T Consensus       122 ~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~  197 (284)
T d2astb2         122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF  197 (284)
T ss_dssp             TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG
T ss_pred             hccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhc
Confidence            788887777 4677766643 4455567777777765 35777777777777777777777776 56777666554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.2e-18  Score=127.28  Aligned_cols=145  Identities=18%  Similarity=0.271  Sum_probs=115.4

Q ss_pred             ceeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHh-cC
Q 037671           34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLIS-RA  112 (187)
Q Consensus        34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~  112 (187)
                      +++.+.++.+++.....+. .+++|++|+++++.   .+++.++..+  ...|++|++|++++|..+++.++..... .+
T Consensus        74 ~~L~L~~~~l~~~~~~~l~-~~~~L~~L~Ls~c~---~itd~~l~~l--~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~  147 (284)
T d2astb2          74 QNLSLEGLRLSDPIVNTLA-KNSNLVRLNLSGCS---GFSEFALQTL--LSSCSRLDELNLSWCFDFTEKHVQVAVAHVS  147 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHT-TCTTCSEEECTTCB---SCCHHHHHHH--HHHCTTCCEEECCCCTTCCHHHHHHHHHHSC
T ss_pred             ccccccccCCCcHHHHHHh-cCCCCcCccccccc---cccccccchh--hHHHHhccccccccccccccccchhhhcccc
Confidence            5678888888877776654 57889999998643   6888888776  3558899999999888788888765444 46


Q ss_pred             CCCCEEEecC--CCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCC-CCCHHHHHhhh
Q 037671          113 SSLQHLNIGG--TFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGT-RLPLDCFIGLL  185 (187)
Q Consensus       113 ~~L~~L~l~~--~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~-~i~~~~~~~L~  185 (187)
                      ++|+.|++++  ..+++.++..++.+||+|++|++++|..+++.++..++ .+|+|++|++++| .++++++..|.
T Consensus       148 ~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~-~~~~L~~L~L~~C~~i~~~~l~~L~  222 (284)
T d2astb2         148 ETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-QLNYLQHLSLSRCYDIIPETLLELG  222 (284)
T ss_dssp             TTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG-GCTTCCEEECTTCTTCCGGGGGGGG
T ss_pred             cccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhc-ccCcCCEEECCCCCCCChHHHHHHh
Confidence            7899999987  36888888888888999999999888888888877776 4888999999887 78888877664

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=3.2e-13  Score=103.14  Aligned_cols=120  Identities=15%  Similarity=0.206  Sum_probs=65.4

Q ss_pred             CCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHH---hcCCCCCEEEecCCCCCHHHHHHH
Q 037671           57 SLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLI---SRASSLQHLNIGGTFITDESLYAI  133 (187)
Q Consensus        57 ~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~l  133 (187)
                      +|+.||++.+    .+++.++..+.  ..+++++.|++++|. +++.++..+.   +.+++|+.|+++++.+++.++..+
T Consensus         3 ~l~~ld~~~~----~i~~~~~~~l~--~~l~~l~~L~L~~~~-i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l   75 (460)
T d1z7xw1           3 DIQSLDIQCE----ELSDARWAELL--PLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNELGDVGVHCV   75 (460)
T ss_dssp             EEEEEEEESC----CCCHHHHHHHH--HHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHH
T ss_pred             CCCEEEeeCC----cCChHHHHHHH--HhCCCCCEEEeCCCC-CCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHH
Confidence            4556666543    55555554442  234556666666554 5555554333   345666666666666666655555


Q ss_pred             HhcC----CccceeeccCCCCCcHHHHHHHHh---cCCCCcEEEeeCCCCCHHHHHhh
Q 037671          134 ANSC----PQLKSIVLWSCRQVTGNGLLFLVN---KCGRLESINVWGTRLPLDCFIGL  184 (187)
Q Consensus       134 ~~~~----~~L~~L~l~~~~~~~~~~~~~l~~---~~~~L~~L~l~~~~i~~~~~~~L  184 (187)
                      +..+    +.|++|++++| .+++.++..+++   .+++|++|++++|.+++.++..+
T Consensus        76 ~~~l~~~~~~L~~L~L~~n-~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l  132 (460)
T d1z7xw1          76 LQGLQTPSCKIQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLL  132 (460)
T ss_dssp             HHTTCSTTCCCCEEECTTS-CCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHH
T ss_pred             HHHHhcCCCCCCEEECCCC-Cccccccccccchhhccccccccccccccchhhhhhhh
Confidence            5433    24666666654 456555554443   34556666666666665554433

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.44  E-value=2.3e-12  Score=95.67  Aligned_cols=120  Identities=16%  Similarity=0.179  Sum_probs=61.6

Q ss_pred             hcCCCCcEEEeeeccCCcccchhhhhhh-hh-hccCCCccEEEecCCCCCCHHHHHHHH---hcCCCCCEEEecCCCCCH
Q 037671           53 GYAYSLKELEISRSRWGCQITDNGLYRM-SF-AKCISNLTSISLWGLTGITDKGVVQLI---SRASSLQHLNIGGTFITD  127 (187)
Q Consensus        53 ~~~~~L~~L~l~~~~~~~~~~~~~l~~l-~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~  127 (187)
                      +.++.++.|++++|    .+++.+...+ .. ...+++|+.|+++++. +++.+...+.   +.+++|+.|++++|.+++
T Consensus       183 ~~~~~L~~L~L~~n----~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~-i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~  257 (344)
T d2ca6a1         183 QSHRLLHTVKMVQN----GIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAIALKSWPNLRELGLNDCLLSA  257 (344)
T ss_dssp             HHCTTCCEEECCSS----CCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHHHGGGCTTCCEEECTTCCCCH
T ss_pred             hhhhhhcccccccc----cccccccccchhhhhcchhhhccccccccc-ccccccccccccccccccchhhhhhcCccCc
Confidence            33455666666543    4454443221 11 1335556666665553 5555443332   345566666666666666


Q ss_pred             HHHHHHHhc-----CCccceeeccCCCCCcHHHHHHHHh----cCCCCcEEEeeCCCCCH
Q 037671          128 ESLYAIANS-----CPQLKSIVLWSCRQVTGNGLLFLVN----KCGRLESINVWGTRLPL  178 (187)
Q Consensus       128 ~~~~~l~~~-----~~~L~~L~l~~~~~~~~~~~~~l~~----~~~~L~~L~l~~~~i~~  178 (187)
                      +++..++..     .+.|++|+++++ .++++++..+++    .+++|+.|++++|.+++
T Consensus       258 ~g~~~l~~~l~~~~~~~L~~L~ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         258 RGAAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             HHHHHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             hhhHHHHHHhhhccCCCCCEEECCCC-cCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            655555432     234666666553 566655554443    34556666666665543

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=4e-12  Score=96.95  Aligned_cols=145  Identities=17%  Similarity=0.197  Sum_probs=92.3

Q ss_pred             eeeecccccCHHHHH---HHHhcCCCCcEEEeeeccCCcccchhhhhhhhhh--ccCCCccEEEecCCCCCCHHHHHHH-
Q 037671           35 NLSFAGWKMDDDSTA---RLVGYAYSLKELEISRSRWGCQITDNGLYRMSFA--KCISNLTSISLWGLTGITDKGVVQL-  108 (187)
Q Consensus        35 ~l~~~~~~l~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~-  108 (187)
                      .+++.++.+......   ......+.++.++++++    .+++.++..++..  ...+.|+.+.++.+. ++..++..+ 
T Consensus       259 ~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n----~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~-l~~~~~~~l~  333 (460)
T d1z7xw1         259 TLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN----ELGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCSHFS  333 (460)
T ss_dssp             EEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTC----CCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccc----cccccccchhhccccccccccccccccccc-hhhhhhhhcc
Confidence            445555555544332   22334566777777654    5666666655422  234567788887765 666655444 


Q ss_pred             --HhcCCCCCEEEecCCCCCHHHHHHHHh----cCCccceeeccCCCCCcHHHHHHHHh---cCCCCcEEEeeCCCCCHH
Q 037671          109 --ISRASSLQHLNIGGTFITDESLYAIAN----SCPQLKSIVLWSCRQVTGNGLLFLVN---KCGRLESINVWGTRLPLD  179 (187)
Q Consensus       109 --~~~~~~L~~L~l~~~~~~~~~~~~l~~----~~~~L~~L~l~~~~~~~~~~~~~l~~---~~~~L~~L~l~~~~i~~~  179 (187)
                        ...+++|+.|+++++.++++++..++.    ..+.|++|++++| .++++++..+++   .+++|++|++++|.++++
T Consensus       334 ~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~  412 (460)
T d1z7xw1         334 SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNNCLGDA  412 (460)
T ss_dssp             HHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred             cccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCC-CCChHHHHHHHHHHhcCCCCCEEECCCCcCCHH
Confidence              345677888888887787777666653    3455888888876 677777666643   367788888888888887


Q ss_pred             HHHhhh
Q 037671          180 CFIGLL  185 (187)
Q Consensus       180 ~~~~L~  185 (187)
                      |+..|+
T Consensus       413 g~~~l~  418 (460)
T d1z7xw1         413 GILQLV  418 (460)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            776654

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.37  E-value=7.9e-12  Score=92.75  Aligned_cols=147  Identities=18%  Similarity=0.261  Sum_probs=114.7

Q ss_pred             ceeeecccccCHHHHHHH------------HhcCCCCcEEEeeeccCCcccchhhhhhhhhh-ccCCCccEEEecCCCCC
Q 037671           34 KNLSFAGWKMDDDSTARL------------VGYAYSLKELEISRSRWGCQITDNGLYRMSFA-KCISNLTSISLWGLTGI  100 (187)
Q Consensus        34 ~~l~~~~~~l~~~~~~~~------------~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~-~~~~~L~~L~l~~~~~~  100 (187)
                      +++.+.++.+++.+...+            ....+.++.++++++    .+++.++..++.. ..++.|+.|+++.+. +
T Consensus       124 ~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n----~i~~~~~~~l~~~l~~~~~L~~L~L~~n~-i  198 (344)
T d2ca6a1         124 EHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN----RLENGSMKEWAKTFQSHRLLHTVKMVQNG-I  198 (344)
T ss_dssp             CEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS----CCTGGGHHHHHHHHHHCTTCCEEECCSSC-C
T ss_pred             hheecccccccccccccccccccccccccccccCcccceeecccc----cccccccccccchhhhhhhhccccccccc-c
Confidence            567777777765543333            234678999999865    7788887776432 457899999999886 8


Q ss_pred             CHHHHHHH----HhcCCCCCEEEecCCCCCHHHHHHHH---hcCCccceeeccCCCCCcHHHHHHHHhc-----CCCCcE
Q 037671          101 TDKGVVQL----ISRASSLQHLNIGGTFITDESLYAIA---NSCPQLKSIVLWSCRQVTGNGLLFLVNK-----CGRLES  168 (187)
Q Consensus       101 ~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~~~~l~---~~~~~L~~L~l~~~~~~~~~~~~~l~~~-----~~~L~~  168 (187)
                      ++.++..+    ...+++|+.|+++++.+++.+...++   ..+++|++|++++| .+++.++..+++.     .+.|++
T Consensus       199 ~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n-~i~~~g~~~l~~~l~~~~~~~L~~  277 (344)
T d2ca6a1         199 RPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC-LLSARGAAAVVDAFSKLENIGLQT  277 (344)
T ss_dssp             CHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTC-CCCHHHHHHHHHHHHTCSSCCCCE
T ss_pred             cccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcC-ccCchhhHHHHHHhhhccCCCCCE
Confidence            88876543    34689999999999999998877665   56788999999996 8999998888754     257999


Q ss_pred             EEeeCCCCCHHHHHhhhc
Q 037671          169 INVWGTRLPLDCFIGLLT  186 (187)
Q Consensus       169 L~l~~~~i~~~~~~~L~~  186 (187)
                      |++++|.++++++..|..
T Consensus       278 L~ls~N~i~~~~~~~l~~  295 (344)
T d2ca6a1         278 LRLQYNEIELDAVRTLKT  295 (344)
T ss_dssp             EECCSSCCBHHHHHHHHH
T ss_pred             EECCCCcCChHHHHHHHH
Confidence            999999999999877653

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.35  E-value=1.3e-11  Score=82.54  Aligned_cols=127  Identities=18%  Similarity=0.179  Sum_probs=99.3

Q ss_pred             HHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhh-ccCCCccEEEecCCCCCCHHHHHHHH---hcCCCCCEEEec
Q 037671           46 DSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFA-KCISNLTSISLWGLTGITDKGVVQLI---SRASSLQHLNIG  121 (187)
Q Consensus        46 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~  121 (187)
                      ..+..+....+.|+.|+|+++.   .++++++..++.+ ...++|++|++++|. +++.++..++   +..+.|+.|+++
T Consensus         5 ~~l~~l~~n~~~L~~L~L~~~~---~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~-l~~~~~~~la~~L~~n~~L~~L~L~   80 (167)
T d1pgva_           5 SCINRLREDDTDLKEVNINNMK---RVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVE   80 (167)
T ss_dssp             HHHHHHHTTCSSCCEEECTTCC---SSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECC
T ss_pred             HHHHHHHhCCCCCcEEEeCCCC---CCCHHHHHHHHHHHhhCCccceeeccccc-cchhHHHHHhhhhhhcccccceeee
Confidence            3467788888999999998532   6888888877533 456889999999886 9888775544   468999999999


Q ss_pred             CCCCCHHHHHHHHhcC---CccceeeccCC--CCCcHHHHHHHHh---cCCCCcEEEeeCCCC
Q 037671          122 GTFITDESLYAIANSC---PQLKSIVLWSC--RQVTGNGLLFLVN---KCGRLESINVWGTRL  176 (187)
Q Consensus       122 ~~~~~~~~~~~l~~~~---~~L~~L~l~~~--~~~~~~~~~~l~~---~~~~L~~L~l~~~~i  176 (187)
                      ++.++++++..++..+   +.|++|+++++  ..+++++...+++   ..++|+.|+++.+..
T Consensus        81 ~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_          81 SNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             SSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             hhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence            9999999998887655   55999999864  2467777665554   478999999987744

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.32  E-value=7e-11  Score=78.79  Aligned_cols=129  Identities=18%  Similarity=0.177  Sum_probs=102.3

Q ss_pred             HHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhh-ccCCCccEEEecCCCCCCHHHHHHHHh---cCCCCCEEEec
Q 037671           46 DSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFA-KCISNLTSISLWGLTGITDKGVVQLIS---RASSLQHLNIG  121 (187)
Q Consensus        46 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~~L~~L~l~  121 (187)
                      ..+..+....+.|++|+++++   ..+++.++..++.+ ..+++|++|+++++. +++.++..++.   ..+.++.++++
T Consensus         7 ~~l~~~~~~~~~L~~L~L~~~---~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~-l~~~~~~~L~~~l~~~~~l~~l~l~   82 (166)
T d1io0a_           7 ETLKRIQNNDPDLEEVNLNNI---MNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVE   82 (166)
T ss_dssp             HHHHHHHTTCTTCCEEECTTC---TTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred             HHHHHHHhcCCCCcEEEcCCC---CCCCHHHHHHHHHHHhcCCccCeeeccCCc-ccHHHHHHHHHHHhhcccchhhhhc
Confidence            346777778899999999853   27899999888644 457899999999985 99988876554   57899999999


Q ss_pred             CCCCCHHHHHHHHhc---CCccceeeccCC-CCCcHHHHHHHHh---cCCCCcEEEeeCCCCCH
Q 037671          122 GTFITDESLYAIANS---CPQLKSIVLWSC-RQVTGNGLLFLVN---KCGRLESINVWGTRLPL  178 (187)
Q Consensus       122 ~~~~~~~~~~~l~~~---~~~L~~L~l~~~-~~~~~~~~~~l~~---~~~~L~~L~l~~~~i~~  178 (187)
                      ++.++++++..++..   .+.|+.+++..+ +.+++++...++.   .+++|++|+++.+...+
T Consensus        83 ~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~~~  146 (166)
T d1io0a_          83 SNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP  146 (166)
T ss_dssp             SSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred             cccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCCcH
Confidence            999999998888744   566888777543 4788988777764   68999999998875543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.26  E-value=4e-11  Score=80.11  Aligned_cols=101  Identities=13%  Similarity=0.206  Sum_probs=83.5

Q ss_pred             ccCCCccEEEecCCCCCCHHHHHHHHh---cCCCCCEEEecCCCCCHHHHHHHHh---cCCccceeeccCCCCCcHHHHH
Q 037671           84 KCISNLTSISLWGLTGITDKGVVQLIS---RASSLQHLNIGGTFITDESLYAIAN---SCPQLKSIVLWSCRQVTGNGLL  157 (187)
Q Consensus        84 ~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~l~~---~~~~L~~L~l~~~~~~~~~~~~  157 (187)
                      ...++|++|+++++..+++.++..++.   ..++|++|+++++.++++++..++.   ..+.|++|++++| .+++.|+.
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n-~i~~~g~~   90 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN-FLTPELLA   90 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehh-hcchHHHH
Confidence            457999999999876699998877665   5688999999999999998776654   4678999999996 89999999


Q ss_pred             HHHhcC---CCCcEEEeeCC---CCCHHHHHhhh
Q 037671          158 FLVNKC---GRLESINVWGT---RLPLDCFIGLL  185 (187)
Q Consensus       158 ~l~~~~---~~L~~L~l~~~---~i~~~~~~~L~  185 (187)
                      .+++.+   ++|++|+++++   .+++++...|+
T Consensus        91 ~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~  124 (167)
T d1pgva_          91 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMM  124 (167)
T ss_dssp             HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHH
T ss_pred             HHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHH
Confidence            887665   67999999877   46677776665

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.15  E-value=5.1e-10  Score=74.49  Aligned_cols=102  Identities=20%  Similarity=0.227  Sum_probs=84.6

Q ss_pred             ccCCCccEEEecCCCCCCHHHHHHHHh---cCCCCCEEEecCCCCCHHHHHHHHh---cCCccceeeccCCCCCcHHHHH
Q 037671           84 KCISNLTSISLWGLTGITDKGVVQLIS---RASSLQHLNIGGTFITDESLYAIAN---SCPQLKSIVLWSCRQVTGNGLL  157 (187)
Q Consensus        84 ~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~l~~---~~~~L~~L~l~~~~~~~~~~~~  157 (187)
                      ...|+|++|++++...+++.++..+++   .++.|+.|+++++.++++++..++.   ..+.++.+++.+| .++++++.
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~-~~~~~g~~   92 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FISGSGIL   92 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccc-cccchhHH
Confidence            457999999999876799999887776   5789999999999999998877654   4577999999885 89999988


Q ss_pred             HHHhc---CCCCcEEEe--eCCCCCHHHHHhhhc
Q 037671          158 FLVNK---CGRLESINV--WGTRLPLDCFIGLLT  186 (187)
Q Consensus       158 ~l~~~---~~~L~~L~l--~~~~i~~~~~~~L~~  186 (187)
                      .+++.   .++|+++++  ++|.++++|...|+.
T Consensus        93 ~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~  126 (166)
T d1io0a_          93 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIAN  126 (166)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHH
T ss_pred             HHHHHHHhCccccEEeeccCCCcCcHHHHHHHHH
Confidence            88754   578988666  567899999888763

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=7e-10  Score=73.52  Aligned_cols=131  Identities=15%  Similarity=0.203  Sum_probs=88.9

Q ss_pred             cceeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcC
Q 037671           33 RKNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRA  112 (187)
Q Consensus        33 ~~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  112 (187)
                      -+++++.+++++.-  +.+...+++|+.|++++|    .+++-  ..+   ..+++|+.|+++++. ++.-.- .+...+
T Consensus        20 lr~L~L~~n~I~~i--~~~~~~l~~L~~L~Ls~N----~i~~l--~~~---~~l~~L~~L~ls~N~-i~~l~~-~~~~~l   86 (162)
T d1a9na_          20 DRELDLRGYKIPVI--ENLGATLDQFDAIDFSDN----EIRKL--DGF---PLLRRLKTLLVNNNR-ICRIGE-GLDQAL   86 (162)
T ss_dssp             CEEEECTTSCCCSC--CCGGGGTTCCSEEECCSS----CCCEE--CCC---CCCSSCCEEECCSSC-CCEECS-CHHHHC
T ss_pred             CcEEECCCCCCCcc--CccccccccCCEEECCCC----CCCcc--CCc---ccCcchhhhhccccc-ccCCCc-cccccc
Confidence            36788888877643  345567889999999987    44432  112   347899999999886 554221 233458


Q ss_pred             CCCCEEEecCCCCCHH-HHHHHHhcCCccceeeccCCCCCcHH-HH-HHHHhcCCCCcEEEeeCCCCCHHH
Q 037671          113 SSLQHLNIGGTFITDE-SLYAIANSCPQLKSIVLWSCRQVTGN-GL-LFLVNKCGRLESINVWGTRLPLDC  180 (187)
Q Consensus       113 ~~L~~L~l~~~~~~~~-~~~~l~~~~~~L~~L~l~~~~~~~~~-~~-~~l~~~~~~L~~L~l~~~~i~~~~  180 (187)
                      ++|+.|++++|.+++- .+..+ ..+|+|++|++.+| .+++. +. ..+...+|+|+.||  +..|+++.
T Consensus        87 ~~L~~L~L~~N~i~~~~~l~~l-~~l~~L~~L~l~~N-~i~~~~~~r~~~i~~lp~L~~LD--~~~i~~~e  153 (162)
T d1a9na_          87 PDLTELILTNNSLVELGDLDPL-ASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLD--FQKVKLKE  153 (162)
T ss_dssp             TTCCEEECCSCCCCCGGGGGGG-GGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEET--TEECCHHH
T ss_pred             cccccceecccccccccccccc-ccccccchhhcCCC-ccccccchHHHHHHHCCCcCeeC--CCCCCHHH
Confidence            9999999999887753 23333 45899999999986 44432 22 33456799999988  44676654

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.68  E-value=1e-09  Score=75.10  Aligned_cols=109  Identities=23%  Similarity=0.213  Sum_probs=59.7

Q ss_pred             HhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHH
Q 037671           52 VGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLY  131 (187)
Q Consensus        52 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  131 (187)
                      +..+++|++|++++|    .+++-  ..+   ..+++|+.|+++++. ++.-  ..+....++|+.|++++|.+++  +.
T Consensus        44 l~~L~~L~~L~Ls~n----~I~~i--~~l---~~l~~L~~L~Ls~N~-i~~i--~~~~~~~~~L~~L~l~~N~i~~--l~  109 (198)
T d1m9la_          44 LSTLKACKHLALSTN----NIEKI--SSL---SGMENLRILSLGRNL-IKKI--ENLDAVADTLEELWISYNQIAS--LS  109 (198)
T ss_dssp             HHHTTTCCEEECSEE----EESCC--CCH---HHHTTCCEEECCEEE-ECSC--SSHHHHHHHCCEEECSEEECCC--HH
T ss_pred             HhcccccceeECccc----CCCCc--ccc---cCCccccChhhcccc-cccc--cccccccccccccccccccccc--cc
Confidence            345678888888866    44431  112   225778888887664 3321  1122223467777777766654  22


Q ss_pred             HHHhcCCccceeeccCCCCCcHHH-HHHHHhcCCCCcEEEeeCCCCC
Q 037671          132 AIANSCPQLKSIVLWSCRQVTGNG-LLFLVNKCGRLESINVWGTRLP  177 (187)
Q Consensus       132 ~l~~~~~~L~~L~l~~~~~~~~~~-~~~l~~~~~~L~~L~l~~~~i~  177 (187)
                      .+ ..+++|++|+++++ .+++-. +..+ ..+|+|+.|++++|+++
T Consensus       110 ~~-~~l~~L~~L~L~~N-~i~~~~~~~~l-~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         110 GI-EKLVNLRVLYMSNN-KITNWGEIDKL-AALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             HH-HHHHHSSEEEESEE-ECCCHHHHHHH-TTTTTCSEEEECSSHHH
T ss_pred             cc-cccccccccccccc-hhccccccccc-cCCCccceeecCCCccc
Confidence            22 23566777777663 454432 2333 35677777777776553

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=3e-09  Score=53.44  Aligned_cols=30  Identities=37%  Similarity=0.493  Sum_probs=25.3

Q ss_pred             CccccccchhHHHHHHHhhHHHHHHh-hhhhc
Q 037671            1 FLFVFVIPFVCLLRVSSVCKKWKLGV-KQSLA   31 (187)
Q Consensus         1 ~I~~~l~~~~~~~~~~~vck~w~~~~-~~~l~   31 (187)
                      +||+||+. +|++++++|||+|++++ .+.+|
T Consensus        11 ~If~~L~~-~dl~~~~~Vcr~w~~l~~~~~lW   41 (41)
T d1fs1a1          11 GIFSCLCL-PELLKVSGVCKRWYRLASDESLW   41 (41)
T ss_dssp             HHHTTSCG-GGHHHHHTTCHHHHHHHTCGGGC
T ss_pred             HHHHcCCH-HHHHHHHHHHHHHHHHhCCcccC
Confidence            48999995 99999999999999977 44443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.67  E-value=3.5e-09  Score=66.94  Aligned_cols=62  Identities=19%  Similarity=0.307  Sum_probs=26.9

Q ss_pred             cCCCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHH-HHHHHHhcCCCCcEEEeeCCCCC
Q 037671          111 RASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGN-GLLFLVNKCGRLESINVWGTRLP  177 (187)
Q Consensus       111 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~-~~~~l~~~~~~L~~L~l~~~~i~  177 (187)
                      .+++|+.|++++|.+++-  .. ...+|+|++|+++++ .+++. .+..+ ..+|+|+.|++++|+++
T Consensus        41 ~l~~L~~L~l~~N~i~~l--~~-~~~l~~L~~L~l~~N-~i~~~~~~~~l-~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          41 ALRCLEVLQASDNALENV--DG-VANLPRLQELLLCNN-RLQQSAAIQPL-VSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             GCTTCCEEECCSSCCCCC--GG-GTTCSSCCEEECCSS-CCCSSSTTGGG-GGCTTCCEEECTTSGGG
T ss_pred             hhhccccccccccccccc--Cc-cccccccCeEECCCC-ccCCCCCchhh-cCCCCCCEEECCCCcCC
Confidence            345555555555444421  11 123455555555542 33322 12222 23555555555555443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=5.5e-09  Score=69.10  Aligned_cols=109  Identities=14%  Similarity=0.115  Sum_probs=76.2

Q ss_pred             CCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHH
Q 037671           55 AYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIA  134 (187)
Q Consensus        55 ~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~  134 (187)
                      ...++.|++++|    .++.-.  .+  ...+++|+.|+++++. ++.-  . -...+++|++|++++|.++.-.. .+.
T Consensus        17 ~~~lr~L~L~~n----~I~~i~--~~--~~~l~~L~~L~Ls~N~-i~~l--~-~~~~l~~L~~L~ls~N~i~~l~~-~~~   83 (162)
T d1a9na_          17 AVRDRELDLRGY----KIPVIE--NL--GATLDQFDAIDFSDNE-IRKL--D-GFPLLRRLKTLLVNNNRICRIGE-GLD   83 (162)
T ss_dssp             TTSCEEEECTTS----CCCSCC--CG--GGGTTCCSEEECCSSC-CCEE--C-CCCCCSSCCEEECCSSCCCEECS-CHH
T ss_pred             cCcCcEEECCCC----CCCccC--cc--ccccccCCEEECCCCC-CCcc--C-CcccCcchhhhhcccccccCCCc-ccc
Confidence            456899999976    444321  11  1336899999999886 6542  1 13468999999999987764211 233


Q ss_pred             hcCCccceeeccCCCCCcHH-HHHHHHhcCCCCcEEEeeCCCCCH
Q 037671          135 NSCPQLKSIVLWSCRQVTGN-GLLFLVNKCGRLESINVWGTRLPL  178 (187)
Q Consensus       135 ~~~~~L~~L~l~~~~~~~~~-~~~~l~~~~~~L~~L~l~~~~i~~  178 (187)
                      ..+|.|++|+++++ .+++- .+..+ ..+|+|++|++++|++++
T Consensus        84 ~~l~~L~~L~L~~N-~i~~~~~l~~l-~~l~~L~~L~l~~N~i~~  126 (162)
T d1a9na_          84 QALPDLTELILTNN-SLVELGDLDPL-ASLKSLTYLCILRNPVTN  126 (162)
T ss_dssp             HHCTTCCEEECCSC-CCCCGGGGGGG-GGCTTCCEEECCSSGGGG
T ss_pred             ccccccccceeccc-ccccccccccc-ccccccchhhcCCCcccc
Confidence            56899999999995 55543 33333 469999999999998864

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.51  E-value=1.7e-07  Score=63.67  Aligned_cols=126  Identities=18%  Similarity=0.188  Sum_probs=68.8

Q ss_pred             ceeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHH-------
Q 037671           34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVV-------  106 (187)
Q Consensus        34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~-------  106 (187)
                      +.+++.++.+++-  . -.+++++|+.|++++|    .+++-.  .+   ..+++|+.|+++++......++.       
T Consensus        43 ~~L~l~~~~i~~l--~-~l~~l~nL~~L~Ls~N----~l~~~~--~l---~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~  110 (199)
T d2omxa2          43 TTLQADRLGIKSI--D-GVEYLNNLTQINFSNN----QLTDIT--PL---KNLTKLVDILMNNNQIADITPLANLTNLTG  110 (199)
T ss_dssp             CEEECTTSCCCCC--T-TGGGCTTCCEEECCSS----CCCCCG--GG---TTCTTCCEEECCSSCCCCCGGGTTCTTCSE
T ss_pred             CEEECCCCCCCCc--c-ccccCCCcCcCccccc----cccCcc--cc---cCCccccccccccccccccccccccccccc
Confidence            4566666666542  1 1356788888888876    333311  11   12445555555444311111110       


Q ss_pred             -----------HHHhcCCCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCC
Q 037671          107 -----------QLISRASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTR  175 (187)
Q Consensus       107 -----------~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~  175 (187)
                                 .....+++|+.|+++++.+..-  .. ...++.++.|++.+| .+++-.  . ..++++|++|++++|+
T Consensus       111 L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~-l~~~~~L~~L~l~~n-~l~~l~--~-l~~l~~L~~L~ls~N~  183 (199)
T d2omxa2         111 LTLFNNQITDIDPLKNLTNLNRLELSSNTISDI--SA-LSGLTSLQQLNFSSN-QVTDLK--P-LANLTTLERLDISSNK  183 (199)
T ss_dssp             EECCSSCCCCCGGGTTCTTCSEEECCSSCCCCC--GG-GTTCTTCSEEECCSS-CCCCCG--G-GTTCTTCCEEECCSSC
T ss_pred             ccccccccccccccchhhhhHHhhhhhhhhccc--cc-ccccccccccccccc-cccCCc--c-ccCCCCCCEEECCCCC
Confidence                       0123456677777776555431  11 234677777877764 444322  1 3468899999999998


Q ss_pred             CCH
Q 037671          176 LPL  178 (187)
Q Consensus       176 i~~  178 (187)
                      +++
T Consensus       184 i~~  186 (199)
T d2omxa2         184 VSD  186 (199)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            876

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.42  E-value=1.4e-08  Score=69.26  Aligned_cols=125  Identities=15%  Similarity=0.190  Sum_probs=82.0

Q ss_pred             ceeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchh-hhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcC
Q 037671           34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDN-GLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRA  112 (187)
Q Consensus        34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  112 (187)
                      ..+++.+++++.-  .. +..+++|+.|++++|    .+++- ++..     ..++|+.|+++++. ++.-  .. ...+
T Consensus        51 ~~L~Ls~n~I~~i--~~-l~~l~~L~~L~Ls~N----~i~~i~~~~~-----~~~~L~~L~l~~N~-i~~l--~~-~~~l  114 (198)
T d1m9la_          51 KHLALSTNNIEKI--SS-LSGMENLRILSLGRN----LIKKIENLDA-----VADTLEELWISYNQ-IASL--SG-IEKL  114 (198)
T ss_dssp             CEEECSEEEESCC--CC-HHHHTTCCEEECCEE----EECSCSSHHH-----HHHHCCEEECSEEE-CCCH--HH-HHHH
T ss_pred             ceeECcccCCCCc--cc-ccCCccccChhhccc----cccccccccc-----cccccccccccccc-cccc--cc-cccc
Confidence            4566666666542  22 456789999999987    45431 2211     24679999998775 6642  22 3347


Q ss_pred             CCCCEEEecCCCCCHH-HHHHHHhcCCccceeeccCCCCCcHH---------HHHHHHhcCCCCcEEEeeCCCCCH
Q 037671          113 SSLQHLNIGGTFITDE-SLYAIANSCPQLKSIVLWSCRQVTGN---------GLLFLVNKCGRLESINVWGTRLPL  178 (187)
Q Consensus       113 ~~L~~L~l~~~~~~~~-~~~~l~~~~~~L~~L~l~~~~~~~~~---------~~~~l~~~~~~L~~L~l~~~~i~~  178 (187)
                      ++|+.|++++|.+++- .+..+ ..+|+|+.|+++++ .+...         .-..+...+|+|+.||  +..|++
T Consensus       115 ~~L~~L~L~~N~i~~~~~~~~l-~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD--~~~I~~  186 (198)
T d1m9la_         115 VNLRVLYMSNNKITNWGEIDKL-AALDKLEDLLLAGN-PLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             HHSSEEEESEEECCCHHHHHHH-TTTTTCSEEEECSS-HHHHHHCTTTTHHHHHHHHHHHCSSCCEES--SGGGTT
T ss_pred             ccccccccccchhccccccccc-cCCCccceeecCCC-ccccCcccccchhhHHHHHHHHCCCcCEeC--CccCCH
Confidence            8999999999888764 34444 45999999999985 33221         1223456799999987  445553

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.42  E-value=1e-07  Score=59.97  Aligned_cols=119  Identities=13%  Similarity=0.123  Sum_probs=79.6

Q ss_pred             eeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCC
Q 037671           35 NLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASS  114 (187)
Q Consensus        35 ~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  114 (187)
                      .+++++++++.-  .. ...++.|++|++++|    .++.-. ..+   ..+++|+.|+++++. ++.-  .. ...+++
T Consensus         2 ~L~Ls~n~l~~l--~~-l~~l~~L~~L~ls~N----~l~~lp-~~~---~~l~~L~~L~l~~N~-i~~l--~~-~~~l~~   66 (124)
T d1dcea3           2 VLHLAHKDLTVL--CH-LEQLLLVTHLDLSHN----RLRALP-PAL---AALRCLEVLQASDNA-LENV--DG-VANLPR   66 (124)
T ss_dssp             EEECTTSCCSSC--CC-GGGGTTCCEEECCSS----CCCCCC-GGG---GGCTTCCEEECCSSC-CCCC--GG-GTTCSS
T ss_pred             EEEcCCCCCCCC--cc-cccCCCCCEEECCCC----ccCcch-hhh---hhhhccccccccccc-cccc--Cc-cccccc
Confidence            355666666532  22 456789999999987    343311 112   237899999999875 5542  22 356899


Q ss_pred             CCEEEecCCCCCHH-HHHHHHhcCCccceeeccCCCCCcHH--HHHHHHhcCCCCcEEE
Q 037671          115 LQHLNIGGTFITDE-SLYAIANSCPQLKSIVLWSCRQVTGN--GLLFLVNKCGRLESIN  170 (187)
Q Consensus       115 L~~L~l~~~~~~~~-~~~~l~~~~~~L~~L~l~~~~~~~~~--~~~~l~~~~~~L~~L~  170 (187)
                      |+.|++++|.+++- .+..+ ..+|+|+.|+++++ .+++.  ....+...+|+|+.|.
T Consensus        67 L~~L~l~~N~i~~~~~~~~l-~~~~~L~~L~l~~N-~i~~~~~~~~~l~~~lp~L~~Ll  123 (124)
T d1dcea3          67 LQELLLCNNRLQQSAAIQPL-VSCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSIL  123 (124)
T ss_dssp             CCEEECCSSCCCSSSTTGGG-GGCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             cCeEECCCCccCCCCCchhh-cCCCCCCEEECCCC-cCCcCccHHHHHHHHCcCcceEe
Confidence            99999999887753 23333 45899999999984 55432  2455677789998874

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.32  E-value=1.1e-06  Score=60.05  Aligned_cols=125  Identities=14%  Similarity=0.164  Sum_probs=68.2

Q ss_pred             ceeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCC
Q 037671           34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRAS  113 (187)
Q Consensus        34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  113 (187)
                      ..+.+.++.++...  . .+++++|++|++++|    .+++-.  .+   ..+++|+.|+++++. ++.-  .. ...++
T Consensus        49 ~~L~l~~~~i~~l~--~-l~~l~~L~~L~L~~n----~i~~l~--~~---~~l~~L~~L~l~~n~-i~~l--~~-l~~l~  112 (210)
T d1h6ta2          49 DQIIANNSDIKSVQ--G-IQYLPNVTKLFLNGN----KLTDIK--PL---ANLKNLGWLFLDENK-VKDL--SS-LKDLK  112 (210)
T ss_dssp             CEEECTTSCCCCCT--T-GGGCTTCCEEECCSS----CCCCCG--GG---TTCTTCCEEECCSSC-CCCG--GG-GTTCT
T ss_pred             cEEECcCCCCCCch--h-HhhCCCCCEEeCCCc----cccCcc--cc---ccCcccccccccccc-cccc--cc-ccccc
Confidence            45666666655321  1 457888888888865    444321  11   235667777776654 4431  11 22345


Q ss_pred             CCCEEEecCCCCCHH-HHH------------------HHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCC
Q 037671          114 SLQHLNIGGTFITDE-SLY------------------AIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGT  174 (187)
Q Consensus       114 ~L~~L~l~~~~~~~~-~~~------------------~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~  174 (187)
                      +|+.|+++++.+.+- .+.                  .....+++|++++++++ .+++-  .. ...+++|++|++++|
T Consensus       113 ~L~~L~l~~~~~~~~~~l~~l~~l~~l~~~~n~l~~~~~~~~l~~L~~l~l~~n-~l~~i--~~-l~~l~~L~~L~Ls~N  188 (210)
T d1h6ta2         113 KLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDN-QISDI--VP-LAGLTKLQNLYLSKN  188 (210)
T ss_dssp             TCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSS-CCCCC--GG-GTTCTTCCEEECCSS
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccc--cc-ccCCCCCCEEECCCC
Confidence            555555555332210 000                  11234677888888774 44432  12 346788888888888


Q ss_pred             CCCH
Q 037671          175 RLPL  178 (187)
Q Consensus       175 ~i~~  178 (187)
                      .+++
T Consensus       189 ~i~~  192 (210)
T d1h6ta2         189 HISD  192 (210)
T ss_dssp             CCCB
T ss_pred             CCCC
Confidence            7764

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.22  E-value=7.8e-08  Score=65.06  Aligned_cols=110  Identities=18%  Similarity=0.138  Sum_probs=71.3

Q ss_pred             CCCcEEEeeeccCCcccchhh-hhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHH
Q 037671           56 YSLKELEISRSRWGCQITDNG-LYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIA  134 (187)
Q Consensus        56 ~~L~~L~l~~~~~~~~~~~~~-l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~  134 (187)
                      +++++|+|++|    .++... ...+   ...++|++|+++++. +..... ......++|+.|++++|.++.-.. ...
T Consensus        29 ~~l~~L~Ls~N----~i~~~~~~~~f---~~l~~L~~L~L~~N~-i~~~~~-~~~~~~~~L~~L~Ls~N~l~~l~~-~~F   98 (192)
T d1w8aa_          29 LHTTELLLNDN----ELGRISSDGLF---GRLPHLVKLELKRNQ-LTGIEP-NAFEGASHIQELQLGENKIKEISN-KMF   98 (192)
T ss_dssp             TTCSEEECCSC----CCCSBCCSCSG---GGCTTCCEEECCSSC-CCCBCT-TTTTTCTTCCEEECCSCCCCEECS-SSS
T ss_pred             CCCCEEEeCCC----CCccccccccc---CCCceEeeeeccccc-cccccc-cccccccccceeeeccccccccCH-HHH
Confidence            56999999987    343211 1111   236889999998765 443222 223457899999999987663111 123


Q ss_pred             hcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCC
Q 037671          135 NSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLP  177 (187)
Q Consensus       135 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~  177 (187)
                      .+++.|++|+++++ .++.-.- ..+..+++|++|++++|.+.
T Consensus        99 ~~l~~L~~L~L~~N-~l~~i~~-~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          99 LGLHQLKTLNLYDN-QISCVMP-GSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             TTCTTCCEEECCSS-CCCEECT-TSSTTCTTCCEEECTTCCBC
T ss_pred             hCCCcccccccCCc-cccccCH-HHhcCCcccccccccccccc
Confidence            56889999999884 6554321 12346889999999999765

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.14  E-value=5.2e-06  Score=56.06  Aligned_cols=103  Identities=15%  Similarity=0.225  Sum_probs=66.0

Q ss_pred             CCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHH
Q 037671           55 AYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIA  134 (187)
Q Consensus        55 ~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~  134 (187)
                      ++.++.|+++++    .+++  +..+   ..+++|+.|+++++. ++...  . ...+++|+.|+++++.+..-.  . .
T Consensus        39 l~~l~~L~l~~~----~i~~--l~~l---~~l~nL~~L~Ls~N~-l~~~~--~-l~~l~~L~~L~l~~n~~~~~~--~-l  102 (199)
T d2omxa2          39 LDQVTTLQADRL----GIKS--IDGV---EYLNNLTQINFSNNQ-LTDIT--P-LKNLTKLVDILMNNNQIADIT--P-L  102 (199)
T ss_dssp             HTTCCEEECTTS----CCCC--CTTG---GGCTTCCEEECCSSC-CCCCG--G-GTTCTTCCEEECCSSCCCCCG--G-G
T ss_pred             hcCCCEEECCCC----CCCC--cccc---ccCCCcCcCcccccc-ccCcc--c-ccCCccccccccccccccccc--c-c
Confidence            478999999865    4444  1222   347999999999875 65422  2 456889999999986554321  1 2


Q ss_pred             hcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCC
Q 037671          135 NSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLP  177 (187)
Q Consensus       135 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~  177 (187)
                      ..++.|+.|+++++......+    ...+++|+.|++++|.++
T Consensus       103 ~~l~~L~~L~l~~~~~~~~~~----~~~l~~L~~L~l~~n~l~  141 (199)
T d2omxa2         103 ANLTNLTGLTLFNNQITDIDP----LKNLTNLNRLELSSNTIS  141 (199)
T ss_dssp             TTCTTCSEEECCSSCCCCCGG----GTTCTTCSEEECCSSCCC
T ss_pred             ccccccccccccccccccccc----cchhhhhHHhhhhhhhhc
Confidence            357778888887654433222    234666777777766554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.12  E-value=3.3e-06  Score=57.58  Aligned_cols=78  Identities=22%  Similarity=0.256  Sum_probs=54.9

Q ss_pred             CCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHh
Q 037671           56 YSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIAN  135 (187)
Q Consensus        56 ~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~  135 (187)
                      ..+++|+++++    .+++-  ..+   ..+++|++|+++++. ++...  . ...+++|+.|+++++.+++  +.. ..
T Consensus        46 ~~L~~L~l~~~----~i~~l--~~l---~~l~~L~~L~L~~n~-i~~l~--~-~~~l~~L~~L~l~~n~i~~--l~~-l~  109 (210)
T d1h6ta2          46 NSIDQIIANNS----DIKSV--QGI---QYLPNVTKLFLNGNK-LTDIK--P-LANLKNLGWLFLDENKVKD--LSS-LK  109 (210)
T ss_dssp             HTCCEEECTTS----CCCCC--TTG---GGCTTCCEEECCSSC-CCCCG--G-GTTCTTCCEEECCSSCCCC--GGG-GT
T ss_pred             cCccEEECcCC----CCCCc--hhH---hhCCCCCEEeCCCcc-ccCcc--c-cccCccccccccccccccc--ccc-cc
Confidence            57899999865    44432  112   347999999999885 65422  2 2468999999999988875  222 34


Q ss_pred             cCCccceeeccCCC
Q 037671          136 SCPQLKSIVLWSCR  149 (187)
Q Consensus       136 ~~~~L~~L~l~~~~  149 (187)
                      .+++|+.|++.++.
T Consensus       110 ~l~~L~~L~l~~~~  123 (210)
T d1h6ta2         110 DLKKLKSLSLEHNG  123 (210)
T ss_dssp             TCTTCCEEECTTSC
T ss_pred             cccccccccccccc
Confidence            57889999998763

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.05  E-value=5.3e-06  Score=57.11  Aligned_cols=126  Identities=12%  Similarity=0.167  Sum_probs=72.0

Q ss_pred             ceeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHH--------
Q 037671           34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGV--------  105 (187)
Q Consensus        34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~--------  105 (187)
                      +.++++++.+....   -...++.++.++++++    .+++  +..+   ..+++|+.+.++.+.......+        
T Consensus        66 ~~L~ls~n~i~~~~---~l~~l~~l~~l~~~~n----~~~~--i~~l---~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~  133 (227)
T d1h6ua2          66 IGLELKDNQITDLA---PLKNLTKITELELSGN----PLKN--VSAI---AGLQSIKTLDLTSTQITDVTPLAGLSNLQV  133 (227)
T ss_dssp             CEEECCSSCCCCCG---GGTTCCSCCEEECCSC----CCSC--CGGG---TTCTTCCEEECTTSCCCCCGGGTTCTTCCE
T ss_pred             cEeecCCceeeccc---cccccccccccccccc----cccc--cccc---cccccccccccccccccccchhccccchhh
Confidence            34555555544321   1456677888888765    2222  1112   1245566666654431111110        


Q ss_pred             ----------HHHHhcCCCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCC
Q 037671          106 ----------VQLISRASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTR  175 (187)
Q Consensus       106 ----------~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~  175 (187)
                                ......+++|+.|+++++.+++..  . ..++++|++|++++| .+++-.  . ...+|+|++|++++|+
T Consensus       134 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~--~-l~~l~~L~~L~Ls~n-~l~~l~--~-l~~l~~L~~L~Ls~N~  206 (227)
T d1h6ua2         134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLT--P-LANLSKLTTLKADDN-KISDIS--P-LASLPNLIEVHLKNNQ  206 (227)
T ss_dssp             EECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSS-CCCCCG--G-GGGCTTCCEEECTTSC
T ss_pred             hhchhhhhchhhhhccccccccccccccccccch--h-hcccccceecccCCC-ccCCCh--h-hcCCCCCCEEECcCCc
Confidence                      011234678999999887665421  1 345888999999885 555422  2 3568999999999998


Q ss_pred             CCH
Q 037671          176 LPL  178 (187)
Q Consensus       176 i~~  178 (187)
                      +++
T Consensus       207 lt~  209 (227)
T d1h6ua2         207 ISD  209 (227)
T ss_dssp             CCB
T ss_pred             CCC
Confidence            764

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=8.3e-07  Score=55.13  Aligned_cols=32  Identities=19%  Similarity=0.312  Sum_probs=28.0

Q ss_pred             CccccccchhHHHHHHHhhHHHHHHh-hhhhccc
Q 037671            1 FLFVFVIPFVCLLRVSSVCKKWKLGV-KQSLARR   33 (187)
Q Consensus         1 ~I~~~l~~~~~~~~~~~vck~w~~~~-~~~l~~~   33 (187)
                      +||+||+ .+|++.+++|||+|++++ .+.+|+.
T Consensus        25 ~Ils~Ld-~~dL~~~s~Vck~W~~l~~d~~lWk~   57 (118)
T d1p22a1          25 NILSYLD-AKSLCAAELVCKEWYRVTSDGMLWKK   57 (118)
T ss_dssp             HHHTTCC-HHHHHHHHHHCHHHHHHHHHTTHHHH
T ss_pred             HHHHcCC-HHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence            4899999 599999999999999977 5677765

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.98  E-value=9.1e-06  Score=59.81  Aligned_cols=124  Identities=18%  Similarity=0.222  Sum_probs=72.0

Q ss_pred             ceeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHH----------
Q 037671           34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDK----------  103 (187)
Q Consensus        34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~----------  103 (187)
                      +.+.+.++.+++..   ....+++++.++++++    .+++-.  .+   ..+++|+.|+++++. ++..          
T Consensus       222 ~~L~l~~n~l~~~~---~l~~l~~L~~L~l~~n----~l~~~~--~~---~~~~~L~~L~l~~~~-l~~~~~~~~~~~l~  288 (384)
T d2omza2         222 DELSLNGNQLKDIG---TLASLTNLTDLDLANN----QISNLA--PL---SGLTKLTELKLGANQ-ISNISPLAGLTALT  288 (384)
T ss_dssp             CEEECCSSCCCCCG---GGGGCTTCSEEECCSS----CCCCCG--GG---TTCTTCSEEECCSSC-CCCCGGGTTCTTCS
T ss_pred             CEEECCCCCCCCcc---hhhcccccchhccccC----ccCCCC--cc---cccccCCEeeccCcc-cCCCCccccccccc
Confidence            34566666555421   2345677777777755    333211  11   224566666665442 1110          


Q ss_pred             ----------HHHHHHhcCCCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeC
Q 037671          104 ----------GVVQLISRASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWG  173 (187)
Q Consensus       104 ----------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~  173 (187)
                                ++. ....+++++.|+++++.+++-  .. ...+|+|++|++++| .+++-.  .+ ..+|+|++|++++
T Consensus       289 ~l~~~~n~l~~~~-~~~~~~~l~~L~ls~n~l~~l--~~-l~~l~~L~~L~L~~n-~l~~l~--~l-~~l~~L~~L~l~~  360 (384)
T d2omza2         289 NLELNENQLEDIS-PISNLKNLTYLTLYFNNISDI--SP-VSSLTKLQRLFFANN-KVSDVS--SL-ANLTNINWLSAGH  360 (384)
T ss_dssp             EEECCSSCCSCCG-GGGGCTTCSEEECCSSCCSCC--GG-GGGCTTCCEEECCSS-CCCCCG--GG-GGCTTCCEEECCS
T ss_pred             ccccccccccccc-ccchhcccCeEECCCCCCCCC--cc-cccCCCCCEEECCCC-CCCCCh--hH-cCCCCCCEEECCC
Confidence                      011 134467888888888776642  12 356888999999886 555432  23 4688899999988


Q ss_pred             CCCCH
Q 037671          174 TRLPL  178 (187)
Q Consensus       174 ~~i~~  178 (187)
                      |++++
T Consensus       361 N~l~~  365 (384)
T d2omza2         361 NQISD  365 (384)
T ss_dssp             SCCCB
T ss_pred             CcCCC
Confidence            88764

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.94  E-value=9.1e-07  Score=53.26  Aligned_cols=33  Identities=21%  Similarity=0.413  Sum_probs=27.8

Q ss_pred             CccccccchhHHHHHHHhhHHHHHHh-h-hhhcccc
Q 037671            1 FLFVFVIPFVCLLRVSSVCKKWKLGV-K-QSLARRK   34 (187)
Q Consensus         1 ~I~~~l~~~~~~~~~~~vck~w~~~~-~-~~l~~~~   34 (187)
                      +||+||+ .+|++++++|||+|++++ . +.+|++.
T Consensus        16 ~I~s~Ld-~~dL~~~s~Vcr~W~~~~~~d~~LWr~l   50 (100)
T d1nexb1          16 KIFNYLQ-FEDIINSLGVSQNWNKIIRKSTSLWKKL   50 (100)
T ss_dssp             HHHTTSC-HHHHHHHTTTCHHHHHHHHTCSHHHHHH
T ss_pred             HHHHCCC-HHHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence            4899999 599999999999999976 3 4688653

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=1.4e-06  Score=62.18  Aligned_cols=87  Identities=14%  Similarity=0.106  Sum_probs=53.4

Q ss_pred             CCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCC
Q 037671           86 ISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGR  165 (187)
Q Consensus        86 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~  165 (187)
                      +++|+.|+++++. ++...- .....+++|+.++++++.++.-.- .....+++|++|+++++ .+....... ...+++
T Consensus       152 ~~~L~~L~l~~N~-l~~l~~-~~f~~l~~L~~l~l~~N~l~~i~~-~~f~~l~~L~~L~l~~N-~i~~~~~~~-~~~~~~  226 (284)
T d1ozna_         152 LGNLTHLFLHGNR-ISSVPE-RAFRGLHSLDRLLLHQNRVAHVHP-HAFRDLGRLMTLYLFAN-NLSALPTEA-LAPLRA  226 (284)
T ss_dssp             CTTCCEEECCSSC-CCEECT-TTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSS-CCSCCCHHH-HTTCTT
T ss_pred             ccchhhcccccCc-ccccch-hhhccccccchhhhhhccccccCh-hHhhhhhhccccccccc-ccccccccc-cccccc
Confidence            5667777777664 433211 122346778888888766553211 12345778888888874 555444333 346888


Q ss_pred             CcEEEeeCCCCC
Q 037671          166 LESINVWGTRLP  177 (187)
Q Consensus       166 L~~L~l~~~~i~  177 (187)
                      |+.|++++|++.
T Consensus       227 L~~L~l~~N~l~  238 (284)
T d1ozna_         227 LQYLRLNDNPWV  238 (284)
T ss_dssp             CCEEECCSSCEE
T ss_pred             cCEEEecCCCCC
Confidence            888988888664

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.89  E-value=1.3e-05  Score=59.04  Aligned_cols=126  Identities=17%  Similarity=0.219  Sum_probs=80.8

Q ss_pred             ceeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccch--------------hhhhhhhhhccCCCccEEEecCCCC
Q 037671           34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITD--------------NGLYRMSFAKCISNLTSISLWGLTG   99 (187)
Q Consensus        34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--------------~~l~~l~~~~~~~~L~~L~l~~~~~   99 (187)
                      ..+.+.++.++...   -...+++|+.++++++... .+..              ..+..+.....+++++.|+++++. 
T Consensus       244 ~~L~l~~n~l~~~~---~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~-  318 (384)
T d2omza2         244 TDLDLANNQISNLA---PLSGLTKLTELKLGANQIS-NISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNN-  318 (384)
T ss_dssp             SEEECCSSCCCCCG---GGTTCTTCSEEECCSSCCC-CCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSC-
T ss_pred             chhccccCccCCCC---cccccccCCEeeccCcccC-CCCccccccccccccccccccccccccchhcccCeEECCCCC-
Confidence            45666666554321   1345788888888765311 0000              011111112457889999998775 


Q ss_pred             CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCC
Q 037671          100 ITDKGVVQLISRASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGT  174 (187)
Q Consensus       100 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~  174 (187)
                      +++..  . ...+++|+.|++++|.+++  +..+ ..+|+|++|++++| .+++-.  . ...+++|+.|++++|
T Consensus       319 l~~l~--~-l~~l~~L~~L~L~~n~l~~--l~~l-~~l~~L~~L~l~~N-~l~~l~--~-l~~l~~L~~L~L~~N  383 (384)
T d2omza2         319 ISDIS--P-VSSLTKLQRLFFANNKVSD--VSSL-ANLTNINWLSAGHN-QISDLT--P-LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CSCCG--G-GGGCTTCCEEECCSSCCCC--CGGG-GGCTTCCEEECCSS-CCCBCG--G-GTTCTTCSEEECCCE
T ss_pred             CCCCc--c-cccCCCCCEEECCCCCCCC--ChhH-cCCCCCCEEECCCC-cCCCCh--h-hccCCCCCEeeCCCC
Confidence            55432  2 4569999999999988775  2234 45899999999885 665432  2 357899999999986

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=1.5e-06  Score=52.39  Aligned_cols=32  Identities=25%  Similarity=0.622  Sum_probs=27.6

Q ss_pred             CccccccchhHHHHHHHhhHHHHHHh-hhhhccc
Q 037671            1 FLFVFVIPFVCLLRVSSVCKKWKLGV-KQSLARR   33 (187)
Q Consensus         1 ~I~~~l~~~~~~~~~~~vck~w~~~~-~~~l~~~   33 (187)
                      +||+||++ +|++++++|||+|++++ .+.+|+.
T Consensus        29 ~Ils~Ld~-~dL~~~~~vcr~w~~l~~~~~lW~~   61 (102)
T d2ovrb1          29 YVLSFLEP-KDLLQAAQTCRYWRILAEDNLLWRE   61 (102)
T ss_dssp             HHHTTSCH-HHHHHHTTSCHHHHHHHTCSHHHHH
T ss_pred             HHHHcCCH-HHHHHHHHHHHHHHHHHCCHHHHHH
Confidence            48999995 99999999999999977 5577754

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=3.4e-06  Score=55.21  Aligned_cols=83  Identities=18%  Similarity=0.261  Sum_probs=55.8

Q ss_pred             ccCCCccEEEecCCCCCCH-HHHHHHHhcCCCCCEEEecCCCCCHH-HHHHHHhcCCccceeeccCCCCCc------HHH
Q 037671           84 KCISNLTSISLWGLTGITD-KGVVQLISRASSLQHLNIGGTFITDE-SLYAIANSCPQLKSIVLWSCRQVT------GNG  155 (187)
Q Consensus        84 ~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~~L~~L~l~~~~~~~------~~~  155 (187)
                      ..+++|+.|+++++. ++. .++......+++|+.|++++|.+++- .+..+.  .+.|++|++.++ .++      ...
T Consensus        62 ~~~~~L~~L~Ls~N~-i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~--~~~L~~L~L~~N-pl~~~~~~~~~y  137 (162)
T d1koha1          62 ENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIK--GLKLEELWLDGN-SLSDTFRDQSTY  137 (162)
T ss_dssp             HHCTTCCCCCCCSSC-CCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHT--TCCCSSCCCTTS-TTSSSSSSHHHH
T ss_pred             HhCCCCCEeeCCCcc-ccCCchhHHHHhhCCcccccccccCccccchhhhhhh--ccccceeecCCC-CcCcCcccchhH
Confidence            457888888888775 544 23444456688999999999877752 333332  446888888874 332      234


Q ss_pred             HHHHHhcCCCCcEEE
Q 037671          156 LLFLVNKCGRLESIN  170 (187)
Q Consensus       156 ~~~l~~~~~~L~~L~  170 (187)
                      ...+.+.+|+|+.||
T Consensus       138 ~~~i~~~~P~L~~LD  152 (162)
T d1koha1         138 ISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHTTSTTCCEET
T ss_pred             HHHHHHHCCCCCEEC
Confidence            556677889998886

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.82  E-value=2.3e-06  Score=61.52  Aligned_cols=89  Identities=10%  Similarity=0.130  Sum_probs=52.2

Q ss_pred             cCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHH-----H
Q 037671           85 CISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLF-----L  159 (187)
Q Consensus        85 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~-----l  159 (187)
                      .++.++.|+++++. ++.... .....+++|++|+++++.++.  +..-...+++|++|+++++ .++.-+-..     .
T Consensus       193 ~~~~l~~L~~s~n~-l~~~~~-~~~~~l~~L~~L~L~~N~L~~--lp~~l~~l~~L~~L~Ls~N-~i~~i~~~~f~~~~~  267 (305)
T d1xkua_         193 GLNNLAKLGLSFNS-ISAVDN-GSLANTPHLRELHLNNNKLVK--VPGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGY  267 (305)
T ss_dssp             TCTTCCEEECCSSC-CCEECT-TTGGGSTTCCEEECCSSCCSS--CCTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSC
T ss_pred             cccccccccccccc-cccccc-ccccccccceeeecccccccc--cccccccccCCCEEECCCC-ccCccChhhccCcch
Confidence            35677777777664 444322 222357888888888866552  1111234778888888874 554322111     1


Q ss_pred             HhcCCCCcEEEeeCCCCCH
Q 037671          160 VNKCGRLESINVWGTRLPL  178 (187)
Q Consensus       160 ~~~~~~L~~L~l~~~~i~~  178 (187)
                      ....++|+.|++++|++..
T Consensus       268 ~~~~~~L~~L~L~~N~~~~  286 (305)
T d1xkua_         268 NTKKASYSGVSLFSNPVQY  286 (305)
T ss_dssp             CTTSCCCSEEECCSSSSCG
T ss_pred             hcccCCCCEEECCCCcCcc
Confidence            2334678888888887653

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.81  E-value=2.8e-05  Score=53.29  Aligned_cols=79  Identities=19%  Similarity=0.228  Sum_probs=58.2

Q ss_pred             ccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcC
Q 037671           84 KCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKC  163 (187)
Q Consensus        84 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~  163 (187)
                      ..+++|+.|+++++. +++..  . ...+++|+.|+++++.+++  +.. ...+|+|++|++++| .+++-.  . .+.+
T Consensus       148 ~~~~~L~~L~l~~n~-~~~~~--~-l~~l~~L~~L~Ls~n~l~~--l~~-l~~l~~L~~L~Ls~N-~lt~i~--~-l~~l  216 (227)
T d1h6ua2         148 AGLTNLQYLSIGNAQ-VSDLT--P-LANLSKLTTLKADDNKISD--ISP-LASLPNLIEVHLKNN-QISDVS--P-LANT  216 (227)
T ss_dssp             GGCTTCCEEECCSSC-CCCCG--G-GTTCTTCCEEECCSSCCCC--CGG-GGGCTTCCEEECTTS-CCCBCG--G-GTTC
T ss_pred             ccccccccccccccc-cccch--h-hcccccceecccCCCccCC--Chh-hcCCCCCCEEECcCC-cCCCCc--c-cccC
Confidence            447889999998775 43321  1 3568999999999987765  222 356899999999996 676543  2 3579


Q ss_pred             CCCcEEEeeC
Q 037671          164 GRLESINVWG  173 (187)
Q Consensus       164 ~~L~~L~l~~  173 (187)
                      ++|+.|++++
T Consensus       217 ~~L~~L~lsn  226 (227)
T d1h6ua2         217 SNLFIVTLTN  226 (227)
T ss_dssp             TTCCEEEEEE
T ss_pred             CCCCEEEeeC
Confidence            9999999974

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=1.5e-05  Score=52.05  Aligned_cols=89  Identities=18%  Similarity=0.232  Sum_probs=62.2

Q ss_pred             HHHHHhcCCCCcEEEeeeccCCcccchh-hhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCC
Q 037671           48 TARLVGYAYSLKELEISRSRWGCQITDN-GLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFIT  126 (187)
Q Consensus        48 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  126 (187)
                      +..+...++.|+.|++++|    .+++- ++...  ...+++|+.|+++++. +++-.-....+ ...|+.|++++|.+.
T Consensus        57 l~~~~~~~~~L~~L~Ls~N----~i~~l~~~~~~--~~~l~~L~~L~Ls~N~-i~~l~~l~~l~-~~~L~~L~L~~Npl~  128 (162)
T d1koha1          57 LRIIEENIPELLSLNLSNN----RLYRLDDMSSI--VQKAPNLKILNLSGNE-LKSERELDKIK-GLKLEELWLDGNSLS  128 (162)
T ss_dssp             HHHHHHHCTTCCCCCCCSS----CCCCCSGGGTH--HHHSTTCCCCCCTTSC-CCCGGGHHHHT-TCCCSSCCCTTSTTS
T ss_pred             hHHHHHhCCCCCEeeCCCc----cccCCchhHHH--HhhCCcccccccccCc-cccchhhhhhh-ccccceeecCCCCcC
Confidence            3455567899999999987    55543 22111  2458999999999886 55432223333 567999999998765


Q ss_pred             H------HHHHHHHhcCCccceee
Q 037671          127 D------ESLYAIANSCPQLKSIV  144 (187)
Q Consensus       127 ~------~~~~~l~~~~~~L~~L~  144 (187)
                      .      .....+...+|+|+.||
T Consensus       129 ~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         129 DTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             SSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             cCcccchhHHHHHHHHCCCCCEEC
Confidence            2      34567788899999987

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.80  E-value=6.8e-07  Score=60.24  Aligned_cols=88  Identities=11%  Similarity=0.110  Sum_probs=61.6

Q ss_pred             CCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCC
Q 037671           86 ISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGR  165 (187)
Q Consensus        86 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~  165 (187)
                      .+++++|+++++. ++...........++|+.|+++++.+..-.. .....++.|++|+++++ .++.-.- ..+.++++
T Consensus        28 p~~l~~L~Ls~N~-i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~-~~~~~~~~L~~L~Ls~N-~l~~l~~-~~F~~l~~  103 (192)
T d1w8aa_          28 PLHTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQLTGIEP-NAFEGASHIQELQLGEN-KIKEISN-KMFLGLHQ  103 (192)
T ss_dssp             CTTCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSSCCCCBCT-TTTTTCTTCCEEECCSC-CCCEECS-SSSTTCTT
T ss_pred             CCCCCEEEeCCCC-CcccccccccCCCceEeeeeccccccccccc-cccccccccceeeeccc-cccccCH-HHHhCCCc
Confidence            4689999999875 6432222233568999999999976653211 22345788999999985 6654332 23457899


Q ss_pred             CcEEEeeCCCCC
Q 037671          166 LESINVWGTRLP  177 (187)
Q Consensus       166 L~~L~l~~~~i~  177 (187)
                      |++|+|++|.++
T Consensus       104 L~~L~L~~N~l~  115 (192)
T d1w8aa_         104 LKTLNLYDNQIS  115 (192)
T ss_dssp             CCEEECCSSCCC
T ss_pred             ccccccCCcccc
Confidence            999999999875

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=5.3e-06  Score=58.55  Aligned_cols=17  Identities=18%  Similarity=0.303  Sum_probs=11.7

Q ss_pred             hcCCCCcEEEeeCCCCC
Q 037671          161 NKCGRLESINVWGTRLP  177 (187)
Q Consensus       161 ~~~~~L~~L~l~~~~i~  177 (187)
                      ..+++|+.+++++|.++
T Consensus       145 ~~l~~l~~l~l~~N~l~  161 (266)
T d1p9ag_         145 TPTPKLEKLSLANNNLT  161 (266)
T ss_dssp             TTCTTCCEEECTTSCCS
T ss_pred             cccccchhccccccccc
Confidence            34567788888877654

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.67  E-value=4.3e-06  Score=60.07  Aligned_cols=110  Identities=15%  Similarity=0.128  Sum_probs=68.6

Q ss_pred             hcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHH
Q 037671           53 GYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYA  132 (187)
Q Consensus        53 ~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  132 (187)
                      ..++.|+.++++++    .++.     +. ...+++|+.|+++++. .+.... .....++.++.|+++++.++.-.. .
T Consensus       147 ~~l~~L~~l~l~~n----~l~~-----l~-~~~~~~L~~L~l~~n~-~~~~~~-~~~~~~~~l~~L~~s~n~l~~~~~-~  213 (305)
T d1xkua_         147 QGMKKLSYIRIADT----NITT-----IP-QGLPPSLTELHLDGNK-ITKVDA-ASLKGLNNLAKLGLSFNSISAVDN-G  213 (305)
T ss_dssp             GGCTTCCEEECCSS----CCCS-----CC-SSCCTTCSEEECTTSC-CCEECT-GGGTTCTTCCEEECCSSCCCEECT-T
T ss_pred             ccccccCccccccC----Cccc-----cC-cccCCccCEEECCCCc-CCCCCh-hHhhcccccccccccccccccccc-c
Confidence            34556666666644    2221     11 1225788888887764 333222 223457889999999877664322 2


Q ss_pred             HHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCCH
Q 037671          133 IANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPL  178 (187)
Q Consensus       133 l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~  178 (187)
                      ...++++|++|++++| .++.-. .. ...+++|+.|++++|+++.
T Consensus       214 ~~~~l~~L~~L~L~~N-~L~~lp-~~-l~~l~~L~~L~Ls~N~i~~  256 (305)
T d1xkua_         214 SLANTPHLRELHLNNN-KLVKVP-GG-LADHKYIQVVYLHNNNISA  256 (305)
T ss_dssp             TGGGSTTCCEEECCSS-CCSSCC-TT-TTTCSSCCEEECCSSCCCC
T ss_pred             cccccccceeeecccc-cccccc-cc-cccccCCCEEECCCCccCc
Confidence            2346899999999986 554221 12 3458999999999998763

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=4.6e-06  Score=58.88  Aligned_cols=14  Identities=14%  Similarity=-0.002  Sum_probs=7.1

Q ss_pred             CCCCcEEEeeCCCC
Q 037671          163 CGRLESINVWGTRL  176 (187)
Q Consensus       163 ~~~L~~L~l~~~~i  176 (187)
                      .++|+.|+|++|+.
T Consensus       194 ~~~L~~L~L~~Np~  207 (266)
T d1p9ag_         194 SHLLPFAFLHGNPW  207 (266)
T ss_dssp             TCCCSEEECCSCCB
T ss_pred             CCCCCEEEecCCCC
Confidence            44555555555543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=4.6e-06  Score=59.40  Aligned_cols=113  Identities=16%  Similarity=0.157  Sum_probs=68.4

Q ss_pred             hcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHH
Q 037671           53 GYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYA  132 (187)
Q Consensus        53 ~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  132 (187)
                      ..+++|+.|+++++    .+.......   ....++|+.++++++. ++...- ...+.+++|+.|+++++.++.-.. .
T Consensus       102 ~~l~~L~~L~l~~n----~~~~~~~~~---~~~~~~L~~l~l~~N~-l~~i~~-~~f~~~~~L~~L~l~~N~l~~l~~-~  171 (284)
T d1ozna_         102 HGLGRLHTLHLDRC----GLQELGPGL---FRGLAALQYLYLQDNA-LQALPD-DTFRDLGNLTHLFLHGNRISSVPE-R  171 (284)
T ss_dssp             TTCTTCCEEECTTS----CCCCCCTTT---TTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSSCCCEECT-T
T ss_pred             cccccCCEEecCCc----ccccccccc---cchhcccchhhhcccc-ccccCh-hHhccccchhhcccccCcccccch-h
Confidence            45577888888765    222211111   1235778888887654 433211 123457889999999877653111 1


Q ss_pred             HHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCC
Q 037671          133 IANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLP  177 (187)
Q Consensus       133 l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~  177 (187)
                      ....++.|++++++++ .++...- .....+++|++|++++|.++
T Consensus       172 ~f~~l~~L~~l~l~~N-~l~~i~~-~~f~~l~~L~~L~l~~N~i~  214 (284)
T d1ozna_         172 AFRGLHSLDRLLLHQN-RVAHVHP-HAFRDLGRLMTLYLFANNLS  214 (284)
T ss_dssp             TTTTCTTCCEEECCSS-CCCEECT-TTTTTCTTCCEEECCSSCCS
T ss_pred             hhccccccchhhhhhc-cccccCh-hHhhhhhhcccccccccccc
Confidence            2245788999999875 5543321 22456889999999999664

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=97.24  E-value=1.3e-06  Score=63.09  Aligned_cols=35  Identities=14%  Similarity=0.069  Sum_probs=15.0

Q ss_pred             CCCCCEEEecCCCCCHHHHHHHHhcCCccceeeccC
Q 037671          112 ASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWS  147 (187)
Q Consensus       112 ~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~  147 (187)
                      +++|++|+++++.+..... .....++.|+.+++++
T Consensus       100 L~~L~~L~Ls~N~l~~~~~-~~~~~~~~L~~l~l~~  134 (313)
T d1ogqa_         100 LTQLHYLYITHTNVSGAIP-DFLSQIKTLVTLDFSY  134 (313)
T ss_dssp             CTTCSEEEEEEECCEEECC-GGGGGCTTCCEEECCS
T ss_pred             ccccchhhhcccccccccc-ccccchhhhccccccc
Confidence            5555555555543332111 1122344455555544

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.18  E-value=2e-05  Score=51.05  Aligned_cols=39  Identities=10%  Similarity=0.087  Sum_probs=19.3

Q ss_pred             CCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCC
Q 037671           86 ISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFIT  126 (187)
Q Consensus        86 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  126 (187)
                      .++|+.|+++++. ++...-. .+...++|++|+|++|.++
T Consensus        55 l~~L~~L~Ls~N~-l~~i~~~-~f~~l~~L~~L~Ls~N~l~   93 (156)
T d2ifga3          55 LGELRNLTIVKSG-LRFVAPD-AFHFTPRLSRLNLSFNALE   93 (156)
T ss_dssp             CCCCSEEECCSSC-CCEECTT-GGGSCSCCCEEECCSSCCS
T ss_pred             ccccCcceeeccc-cCCcccc-cccccccccceeccCCCCc
Confidence            4566666665553 3332111 1233566666666665443

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=96.95  E-value=1.9e-05  Score=56.82  Aligned_cols=133  Identities=14%  Similarity=0.123  Sum_probs=79.1

Q ss_pred             ceeeecccccCHH-HHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcC
Q 037671           34 KNLSFAGWKMDDD-STARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRA  112 (187)
Q Consensus        34 ~~l~~~~~~l~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  112 (187)
                      ..+++.+..+.-. .+..-+..+++|+.|+++++.   .++..-...+   ..+++|++|+++++. +..... ......
T Consensus        53 ~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N---~l~g~iP~~i---~~L~~L~~L~Ls~N~-l~~~~~-~~~~~~  124 (313)
T d1ogqa_          53 NNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGIN---NLVGPIPPAI---AKLTQLHYLYITHTN-VSGAIP-DFLSQI  124 (313)
T ss_dssp             EEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEET---TEESCCCGGG---GGCTTCSEEEEEEEC-CEEECC-GGGGGC
T ss_pred             EEEECCCCCCCCCCCCChHHhcCcccccccccccc---cccccccccc---ccccccchhhhcccc-cccccc-ccccch
Confidence            4566666654421 122345578999999998621   3332222223   347899999998775 433211 223458


Q ss_pred             CCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCC-CcEEEeeCCCCC
Q 037671          113 SSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGR-LESINVWGTRLP  177 (187)
Q Consensus       113 ~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~-L~~L~l~~~~i~  177 (187)
                      +.|+.++++++.+....-.. ...++.++.++++++ .++...-..+. ..+. ++.+++++|.++
T Consensus       125 ~~L~~l~l~~N~~~~~~p~~-l~~l~~L~~l~l~~n-~l~~~ip~~~~-~l~~l~~~l~~~~n~l~  187 (313)
T d1ogqa_         125 KTLVTLDFSYNALSGTLPPS-ISSLPNLVGITFDGN-RISGAIPDSYG-SFSKLFTSMTISRNRLT  187 (313)
T ss_dssp             TTCCEEECCSSEEESCCCGG-GGGCTTCCEEECCSS-CCEEECCGGGG-CCCTTCCEEECCSSEEE
T ss_pred             hhhcccccccccccccCchh-hccCcccceeecccc-ccccccccccc-ccccccccccccccccc
Confidence            89999999986443221112 245889999999885 44432212223 3444 588999988664

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.80  E-value=3e-05  Score=53.54  Aligned_cols=111  Identities=8%  Similarity=0.008  Sum_probs=56.1

Q ss_pred             CCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecC-CCCCHHHHHHHH
Q 037671           56 YSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGG-TFITDESLYAIA  134 (187)
Q Consensus        56 ~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~  134 (187)
                      ++++.|++++|    .++.-....+   ..+++|++|+++++. +....-......+++++.+.+.+ +.+..... ...
T Consensus        29 ~~l~~L~Ls~n----~i~~l~~~~f---~~l~~L~~L~ls~n~-~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~-~~~   99 (242)
T d1xwdc1          29 RNAIELRFVLT----KLRVIQKGAF---SGFGDLEKIEISQND-VLEVIEADVFSNLPKLHEIRIEKANNLLYINP-EAF   99 (242)
T ss_dssp             SCCSEEEEESC----CCCEECTTTT---TTCTTCCEEEEESCT-TCCEECSSSEESCTTCCEEEEECCTTCCEECT-TSE
T ss_pred             CCCCEEECcCC----cCCccChhHh---hccchhhhhhhcccc-ccceeecccccccccccccccccccccccccc-ccc
Confidence            46888888876    3332111111   236788888888765 22210011123467788887765 44432111 123


Q ss_pred             hcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCC
Q 037671          135 NSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRL  176 (187)
Q Consensus       135 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i  176 (187)
                      ..+++|+++++.++ .+++..........+.+..+....+.+
T Consensus       100 ~~l~~L~~l~l~~~-~l~~~~~~~~~~~l~~l~~~~~~n~~l  140 (242)
T d1xwdc1         100 QNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINI  140 (242)
T ss_dssp             ECCTTCCEEEEESC-CCCSCCCCTTTCBSSCEEEEEESCTTC
T ss_pred             cccccccccccchh-hhccccccccccccccccccccccccc
Confidence            55788888888775 444332221222233444444444443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=96.72  E-value=0.00051  Score=49.33  Aligned_cols=96  Identities=17%  Similarity=0.158  Sum_probs=57.9

Q ss_pred             CCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHh
Q 037671           56 YSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIAN  135 (187)
Q Consensus        56 ~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~  135 (187)
                      .++++|+++++    .++.     +.  ...++|++|+++++. ++.-     ....++|+.|++.++.++.     +..
T Consensus        38 ~~l~~LdLs~~----~L~~-----lp--~~~~~L~~L~Ls~N~-l~~l-----p~~~~~L~~L~l~~n~l~~-----l~~   95 (353)
T d1jl5a_          38 RQAHELELNNL----GLSS-----LP--ELPPHLESLVASCNS-LTEL-----PELPQSLKSLLVDNNNLKA-----LSD   95 (353)
T ss_dssp             HTCSEEECTTS----CCSC-----CC--SCCTTCSEEECCSSC-CSSC-----CCCCTTCCEEECCSSCCSC-----CCS
T ss_pred             cCCCEEEeCCC----CCCC-----CC--CCCCCCCEEECCCCC-Cccc-----ccchhhhhhhhhhhcccch-----hhh
Confidence            46888888865    3331     11  124778888887654 5421     1235688888888865542     122


Q ss_pred             cCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCC
Q 037671          136 SCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLP  177 (187)
Q Consensus       136 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~  177 (187)
                      -.+.|++|+++++ .+..-.  . ...+++|+.|+++++.++
T Consensus        96 lp~~L~~L~L~~n-~l~~lp--~-~~~l~~L~~L~l~~~~~~  133 (353)
T d1jl5a_          96 LPPLLEYLGVSNN-QLEKLP--E-LQNSSFLKIIDVDNNSLK  133 (353)
T ss_dssp             CCTTCCEEECCSS-CCSSCC--C-CTTCTTCCEEECCSSCCS
T ss_pred             hcccccccccccc-cccccc--c-hhhhccceeecccccccc
Confidence            2345888888875 444321  1 234678888888877553

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.60  E-value=0.00046  Score=44.38  Aligned_cols=88  Identities=15%  Similarity=0.077  Sum_probs=56.8

Q ss_pred             cCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCC
Q 037671           85 CISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCG  164 (187)
Q Consensus        85 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~  164 (187)
                      ..++|++|.+.+...++...... +...++|+.|+++++.++.-.- .....+++|++|+++++ .++.-.-. +.+ ..
T Consensus        29 ~l~~l~~L~l~~n~~l~~i~~~~-f~~l~~L~~L~Ls~N~l~~i~~-~~f~~l~~L~~L~Ls~N-~l~~l~~~-~~~-~~  103 (156)
T d2ifga3          29 GAENLTELYIENQQHLQHLELRD-LRGLGELRNLTIVKSGLRFVAP-DAFHFTPRLSRLNLSFN-ALESLSWK-TVQ-GL  103 (156)
T ss_dssp             SCSCCSEEECCSCSSCCEECGGG-SCSCCCCSEEECCSSCCCEECT-TGGGSCSCCCEEECCSS-CCSCCCST-TTC-SC
T ss_pred             CccccCeeecCCCccccccCchh-hccccccCcceeeccccCCccc-ccccccccccceeccCC-CCcccChh-hhc-cc
Confidence            35788899887554454432222 2457899999999977663211 12355889999999884 55532211 122 34


Q ss_pred             CCcEEEeeCCCCC
Q 037671          165 RLESINVWGTRLP  177 (187)
Q Consensus       165 ~L~~L~l~~~~i~  177 (187)
                      +|+.|+|++|.+.
T Consensus       104 ~l~~L~L~~Np~~  116 (156)
T d2ifga3         104 SLQELVLSGNPLH  116 (156)
T ss_dssp             CCCEEECCSSCCC
T ss_pred             cccccccCCCccc
Confidence            6999999999774

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.48  E-value=8.2e-05  Score=51.22  Aligned_cols=85  Identities=19%  Similarity=0.064  Sum_probs=48.4

Q ss_pred             ceeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCC
Q 037671           34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRAS  113 (187)
Q Consensus        34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  113 (187)
                      ..+++.+.+++.-. ...+..+++|+.|++++|.....+....+      ..+++++++.+..+..+...... ....++
T Consensus        32 ~~L~Ls~n~i~~l~-~~~f~~l~~L~~L~ls~n~~~~~i~~~~f------~~l~~l~~l~~~~~n~l~~~~~~-~~~~l~  103 (242)
T d1xwdc1          32 IELRFVLTKLRVIQ-KGAFSGFGDLEKIEISQNDVLEVIEADVF------SNLPKLHEIRIEKANNLLYINPE-AFQNLP  103 (242)
T ss_dssp             SEEEEESCCCCEEC-TTTTTTCTTCCEEEEESCTTCCEECSSSE------ESCTTCCEEEEECCTTCCEECTT-SEECCT
T ss_pred             CEEECcCCcCCccC-hhHhhccchhhhhhhccccccceeecccc------ccccccccccccccccccccccc-cccccc
Confidence            45666666654211 11345689999999998732111222222      23577788877655434333221 224578


Q ss_pred             CCCEEEecCCCCC
Q 037671          114 SLQHLNIGGTFIT  126 (187)
Q Consensus       114 ~L~~L~l~~~~~~  126 (187)
                      +|+.+++.++.++
T Consensus       104 ~L~~l~l~~~~l~  116 (242)
T d1xwdc1         104 NLQYLLISNTGIK  116 (242)
T ss_dssp             TCCEEEEESCCCC
T ss_pred             cccccccchhhhc
Confidence            8888888886655

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=96.23  E-value=0.0011  Score=47.48  Aligned_cols=55  Identities=16%  Similarity=0.198  Sum_probs=41.5

Q ss_pred             CCCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCC
Q 037671          112 ASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLP  177 (187)
Q Consensus       112 ~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~  177 (187)
                      +++|++|++++|.++.     +...+++|++|++++| .+++-     .+.+++|++|++++|+++
T Consensus       283 ~~~L~~L~Ls~N~l~~-----lp~~~~~L~~L~L~~N-~L~~l-----~~~~~~L~~L~L~~N~L~  337 (353)
T d1jl5a_         283 PPSLEELNVSNNKLIE-----LPALPPRLERLIASFN-HLAEV-----PELPQNLKQLHVEYNPLR  337 (353)
T ss_dssp             CTTCCEEECCSSCCSC-----CCCCCTTCCEEECCSS-CCSCC-----CCCCTTCCEEECCSSCCS
T ss_pred             CCCCCEEECCCCccCc-----cccccCCCCEEECCCC-cCCcc-----ccccCCCCEEECcCCcCC
Confidence            4789999999987652     3345788999999885 56532     244678999999999775