Citrus Sinensis ID: 037732

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350
Protein Sequence
YTAIASIDDLLMYGMGMGLFQGVNKMQVARARAHGLVHKLKACCMFSMHDVVRDVAISIASTEQNVFSATEEQTNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRGLFLEKLETFKILIGGVWGWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLTLNPAESNV
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccccccccccccccccccccccccHHHcccccccccccccHHHHHccccccEEEEcccccccccccccccccccEEEcccccccccccccccccccEEEccccccccccHHHHccccccEEccccccccccccHHHHHccccccEEEcccccccccHHHHcccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccEEEccccccccccHHHHHccccccEEEccccccccccHHHHHHcccccccccEEEEEccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHccccccccccEEEEEEEccccccccccHHHHHHcccEEEEEcccccccccccHHHHHHHHHHHEHcccccccHHHHHHHHccEEEEcccccHHHccHHHHHHHHcEEEcccccccccEccccHHHHHHHHHEEEccccccccccccccccHHHHHHHHHcccEEEEEEcccccccccccHHHccEEEEEEcccccccccHHHHcEEEEEccccHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEHcccccccccEEEEEEccccccccccccc
Coil and Loop (DISEMBL)
YTAIASIDDLLMYGMGMGLFQGVNKMQVARARAHGLVHKLKACCMFSMHDVVRDVAISIASTEQNVFSATEEQTNLLLEVVECPQLELLFICadkesssltipnKFFERMIQVRVINFSYMNLLslpsslgllsnlqnlslyncklldITVIRDLKKLAVLCLRgsdikrlpvevgELTLLRLLdlrdcmelevippnilsnlshleelymgprsfdkWEVEVEGVKNASLHELKHLISLELQiqdvntfprglfleKLETFKILIGGVWGWEYADIWCREFKIDldskirlkdgLILKLEGIEDLWLSYLEEQDVNYFVNELVKvgpsqlkhlyirgshltlnpaesnv
Flexible Loop (DISEMBL)
YTAIASIDDLLMYGMGMGLFQGVNKMQVARARAHGLVHKLKACCMFSMHDVVRDVAISIASTEQNVFSATEEQTNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLClrgsdikrlpvevgELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRGLFLEKLETFKILIGGVWGWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHlyirgshltlnpaesnv
Low Complexity Region (SEG)
YTAIASIDDLLMYGMGMGLFQGVNKMQVARARAHGLVHKLKACCMFSMHDVVRDVAISIASTEQNVFSATEEQTNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMnllslpsslgllsnlqnlslYNCKLLDITVIRDLKKLAVLCLRGSDIKRLPVEVGEltllrlldlrdCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRGLFLEKLETFKILIGGVWGWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLTLNPAESNV
Disordered region (IsUnstruct)
***IASIDDLLMYGMGMGLFQGVNKMQVARARAHGLVHKLKACCMFSMHDVVRDVAISIASTEQNVFSATEEQTNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRGLFLEKLETFKILIGGVWGWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHL*********
Disordered Region (DISOPRED)
YTAIASIDDLLMYGMGMGLFQGVNKMQVARARAHGLVHKLKACCMFSMHDVVRDVAISIASTEQNVFSATEEQTNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRGLFLEKLETFKILIGGVWGWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLTLNPA****
Disordered Region (DISEMBL)
YTAIASIDDLLMYGMGMGLFQGVNKMQVARARAHGLVHKLKACCMFSMHDVVRDVAISIASTEQNVFSATEEQTNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRGLFLEKLETFKILIGGVWGWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLTLNPAESNV
Disordered Region (DISPRO)
YTAIASIDDLLMYGMGMGLFQGVNKMQVARARAHGLVHKLKACCMFSMHDVVRDVAISIASTEQNVFSATEEQTNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRGLFLEKLETFKILIGGVWGWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSH**********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
YTAIASIDDLLMYGMGMGLFQGVNKMQVARARAHGLVHKLKACCMFSMHDVVRDVAISIASTEQNVFSATEEQTNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRGLFLEKLETFKILIGGVWGWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLTLNPAESNV
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	350	2.2.26 [Sep-21-2011]
O81825	919	Probable disease resistan	yes	no	0.688	0.262	0.278	2e-14
Q9T048	985	Disease resistance protei	no	no	0.731	0.259	0.271	4e-13
Q42484	909	Disease resistance protei	no	no	0.614	0.236	0.260	8e-10
Q7XBQ9	970	Disease resistance protei	N/A	no	0.394	0.142	0.301	1e-05
Q24020	1256	Protein flightless-1 OS=D	no	no	0.385	0.107	0.319	5e-05
Q9RBS2	1024	Protein PopC OS=Ralstonia	yes	no	0.24	0.082	0.373	0.0002
Q8IWT6	810	Leucine-rich repeat-conta	yes	no	0.262	0.113	0.336	0.0003
P58682	1032	Toll-like receptor 8 OS=M	yes	no	0.408	0.138	0.266	0.0003
Q80WG5	810	Leucine-rich repeat-conta	no	no	0.262	0.113	0.336	0.0004
Q4V8I7	810	Leucine-rich repeat-conta	yes	no	0.262	0.113	0.336	0.0004

>sp|O81825|DRL28_ARATH Probable disease resistance protein At4g27220 OS=Arabidopsis thaliana GN=At4g27220 PE=2 SV=1

 Score = 80.9 bits (198), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 79/284 (27%), Positives = 131/284 (46%), Gaps = 43/284 (15%)

Query: 7   IDDLLMYGMGMGLFQGVNKMQVARARAHGLVHKLKACCMF---------SMHDVVRDVAI 57
           + +L+MY +  GL  G +  +        LV +LK  C+           MHDVVRD AI
Sbjct: 381 VSELIMYWVAEGLLDGQHHYEDMMNEGVTLVERLKDSCLLEDGDSCDTVKMHDVVRDFAI 440

Query: 58  SIASTE------------------QNVFSATEEQTNLLLEVVE------CPQLELLFICA 93
              S++                  Q+ F ++ ++ +L+   +E         +E L +  
Sbjct: 441 WFMSSQGEGFHSLVMAGRGLIEFPQDKFVSSVQRVSLMANKLERLPNNVIEGVETLVLLL 500

Query: 94  DKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNC-KLLDITVI 152
              S    +PN F +    +R+++ S + + +LP S   L +L++L L NC KL ++  +
Sbjct: 501 QGNSHVKEVPNGFLQAFPNLRILDLSGVRIRTLPDSFSNLHSLRSLVLRNCKKLRNLPSL 560

Query: 153 RDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMG 212
             L KL  L L  S I+ LP  +  L+ LR + + +  +L+ IP   +  LS LE L M 
Sbjct: 561 ESLVKLQFLDLHESAIRELPRGLEALSSLRYICVSNTYQLQSIPAGTILQLSSLEVLDMA 620

Query: 213 PRSFDKWEV---EVEGVKNASLHE---LKHLISLELQIQDVNTF 250
             ++  W +   E EG   A+L E   L HL  L +++ DV +F
Sbjct: 621 GSAYS-WGIKGEEREG--QATLDEVTCLPHLQFLAIKLLDVLSF 661

Probable disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9T048|DRL27_ARATH Disease resistance protein At4g27190 OS=Arabidopsis thaliana GN=At4g27190 PE=2 SV=1

 Score = 75.9 bits (185), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 84/309 (27%), Positives = 140/309 (45%), Gaps = 53/309 (17%)

Query: 7   IDDLLMYGMGMGLFQGVNKMQVARARAHGLVHKLKACCMF---------SMHDVVRDVAI 57
           + +++ Y M  G  + +   + +       V  LK  C+           MHDVVRD AI
Sbjct: 412 VTEVVRYWMAEGFMEELGSQEDSMNEGITTVESLKDYCLLEDGDRRDTVKMHDVVRDFAI 471

Query: 58  SIASTEQN-----VFSAT--------------------EEQTNLLLEVVE--CPQLELLF 90
            I S+ Q+     V S T                      +   L ++VE  C +  +L 
Sbjct: 472 WIMSSSQDDSHSLVMSGTGLQDIRQDKLAPSLRRVSLMNNKLESLPDLVEEFCVKTSVLL 531

Query: 91  ICAD---KESSSLTIPNKFFERMIQVRVINFSYMNLLSLPS-SLGLLSNLQNLSLYNC-K 145
           +  +   KE     +P  F +    +R++N S   + S PS SL  L +L +L L +C K
Sbjct: 532 LQGNFLLKE-----VPIGFLQAFPTLRILNLSGTRIKSFPSCSLLRLFSLHSLFLRDCFK 586

Query: 146 LLDITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSH 205
           L+ +  +  L KL +L L G+ I   P  + EL   R LDL   + LE IP  ++S LS 
Sbjct: 587 LVKLPSLETLAKLELLDLCGTHILEFPRGLEELKRFRHLDLSRTLHLESIPARVVSRLSS 646

Query: 206 LEELYMGPRSFDKWEVEVEGVK-NASLHELKHLISLELQIQDVNTFP-----RGLFLEKL 259
           LE L M    + +W V+ E  K  A++ E+  L  L++    +++ P     R  ++++L
Sbjct: 647 LETLDMTSSHY-RWSVQGETQKGQATVEEIGCLQRLQVLSIRLHSSPFLLNKRNTWIKRL 705

Query: 260 ETFKILIGG 268
           + F++++G 
Sbjct: 706 KKFQLVVGS 714

Disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q42484|RPS2_ARATH Disease resistance protein RPS2 OS=Arabidopsis thaliana GN=RPS2 PE=1 SV=1

 Score = 65.1 bits (157), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 75/288 (26%), Positives = 120/288 (41%), Gaps = 73/288 (25%)

Query: 7   IDDLLMYGMGMGLF---QGVNKMQVARARAHGLVHKLKACCMF---------SMHDVVRD 54
           I+ L+ Y +G G      GVN +     + + L+  LKA C+           MH+VVR 
Sbjct: 422 IEQLVEYWVGEGFLTSSHGVNTI----YKGYFLIGDLKAACLLETGDEKTQVKMHNVVRS 477

Query: 55  VAISIASTEQN--------------------------VFSATEEQTNLLLEVVECPQLEL 88
            A+ +AS +                            V S  + +   L E + CP+L  
Sbjct: 478 FALWMASEQGTYKELILVEPSMGHTEAPKAENWRQALVISLLDNRIQTLPEKLICPKLTT 537

Query: 89  LFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLD 148
           L +   + SS   IP  FF  M  +RV++ S+ ++  +P S+  L  L +LS+       
Sbjct: 538 LML--QQNSSLKKIPTGFFMHMPVLRVLDLSFTSITEIPLSIKYLVELYHLSM------- 588

Query: 149 ITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEE 208
                           G+ I  LP E+G L  L+ LDL+    L+ IP + +  LS LE 
Sbjct: 589 ---------------SGTKISVLPQELGNLRKLKHLDLQRTQFLQTIPRDAICWLSKLEV 633

Query: 209 LYMGPRSFDKWEV------EVEGVKNASLHELKHLISLELQIQDVNTF 250
           L +   S+  WE+      E E +  A L  L++L +L + +  + T 
Sbjct: 634 LNLY-YSYAGWELQSFGEDEAEELGFADLEYLENLTTLGITVLSLETL 680

Disease resistance (R) protein that specifically recognizes the AvrRpt2 type III effector avirulence protein from Pseudomonas syringae. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Acts via its interaction with RIN4, and probably triggers the plant resistance when RIN4 is degraded by AvrRpt2.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XBQ9|RGA2_SOLBU Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1

 Score = 51.2 bits (121), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 75/166 (45%), Gaps = 28/166 (16%)

Query: 46  FSMHDVVRDVAISIASTEQNVFSATEEQTNLLLEVVECPQLELLFICADKESSSLTIPNK 105
           F MHD++ D+A S+       FSA    +N+  E+ +     ++ I   +     T+P  
Sbjct: 471 FKMHDLIHDLATSL-------FSANTSSSNIR-EINKHSYTHMMSIGFAEVVFFYTLPP- 521

Query: 106 FFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYN----------CKLLDITVIRDL 155
             E+ I +RV+N        LPSS+G L +L+ L+LY           CKL ++  + DL
Sbjct: 522 -LEKFISLRVLNLGDSTFNKLPSSIGDLVHLRYLNLYGSGMRSLPKQLCKLQNLQTL-DL 579

Query: 156 KKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILS 201
           +    LC        LP E  +L  LR L L     L  +PP I S
Sbjct: 580 QYCTKLCC-------LPKETSKLGSLRNLLLDGSQSLTCMPPRIGS 618

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Confers a broad resistance to all known races of P.infestans.

Solanum bulbocastanum (taxid: 147425)

>sp|Q24020|FLII_DROME Protein flightless-1 OS=Drosophila melanogaster GN=fliI PE=2 SV=1

 Score = 48.9 bits (115), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 79/147 (53%), Gaps = 12/147 (8%)

Query: 113 VRVINFSYMNL-LSLPSSLGLLSNLQNLSLYNCKLLDITV-IRDLKKLAVLCLRGSDIKR 170
           VR ++F+  +   + PSS+  +S +Q L+L   +L +I   +  L+KL  L L  + +++
Sbjct: 7   VRGVDFTKNDFSATFPSSMRQMSRVQWLTLDRTQLAEIPEELGHLQKLEHLSLNHNRLEK 66

Query: 171 LPVEVGELTLLRLLDLR-DCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNA 229
           +  E+ EL+ LR LDLR + ++   IPP +     HLEEL     S +K +   EG++ A
Sbjct: 67  IFGELTELSCLRSLDLRHNQLKNSGIPPELF----HLEELTTLDLSHNKLKEVPEGLERA 122

Query: 230 SLHELKHLISLELQIQDVNTFPRGLFL 256
                K+LI L L    + + P  LF+
Sbjct: 123 -----KNLIVLNLSNNQIESIPTPLFI 144

May play a key role in embryonic cellularization by interacting with both the cytoskeleton and other cellular components. Alternatively, it may play a structural role in indirect flight muscle. Vital for embryonic development.

Drosophila melanogaster (taxid: 7227)

>sp|Q9RBS2|POPC_RALSO Protein PopC OS=Ralstonia solanacearum (strain GMI1000) GN=popC PE=4 SV=2

 Score = 47.0 bits (110), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 51/91 (56%), Gaps = 7/91 (7%)

Query: 108 ERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYN---CKLLDITVIRDLKKLAVLCLR 164
           ER+ Q   ++ S   L +LPSS+G LSNL+ L+L N    +LL  + +R L+ +  + L 
Sbjct: 590 ERLTQ---LSLSNTQLRALPSSIGKLSNLKGLTLKNNARLELLSESGVRKLESVRKIDLS 646

Query: 165 GS-DIKRLPVEVGELTLLRLLDLRDCMELEV 194
           G   +  LP  +G+L  LR LDL  C  L +
Sbjct: 647 GCVRLTGLPSSIGKLPKLRTLDLSGCTGLSM 677

Probably involved in host-pathogen interactions. May interact with plant target proteins; may modulate a plant signal transduction pathway.

Ralstonia solanacearum (strain GMI1000) (taxid: 267608)

>sp|Q8IWT6|LRC8A_HUMAN Leucine-rich repeat-containing protein 8A OS=Homo sapiens GN=LRRC8A PE=1 SV=1

 Score = 46.6 bits (109), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 57/98 (58%), Gaps = 6/98 (6%)

Query: 102 IPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITV-IRDLKKLAV 160
           IP + F    ++R ++ S+ NL  LP+ +GLL NLQNL++   ++  +   +   +KL  
Sbjct: 677 IPTQLF-YCRKLRYLDLSHNNLTFLPADIGLLQNLQNLAITANRIETLPPELFQCRKLRA 735

Query: 161 LCLRGSDIKRLPVEVGELTLLRLLDLR----DCMELEV 194
           L L  + ++ LP  VGELT L  ++LR    +C+ +E+
Sbjct: 736 LHLGNNVLQSLPSRVGELTNLTQIELRGNRLECLPVEL 773

Involved in B-cell development. Required for the pro-B cell to pre-B cell transition.

Homo sapiens (taxid: 9606)

>sp|P58682|TLR8_MOUSE Toll-like receptor 8 OS=Mus musculus GN=Tlr8 PE=1 SV=2

 Score = 46.2 bits (108), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 77/169 (45%), Gaps = 26/169 (15%)

Query: 63  EQNVFSATEEQTNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMN 122
           + N+F  T+  T     +    +L L + C  K + +  + +  F+ +I ++V++ S+ N
Sbjct: 151 QNNIFQVTKNNT---FGLRNLERLYLGWNCYFKCNQTFKVEDGAFKNLIHLKVLSLSFNN 207

Query: 123 LLSLPSSLGLLSNLQNLSLYNCKLLDITV--IRDLKKLAVL------------------C 162
           L  +P  L   S+L+ L L N K+++IT    + L+ L +L                  C
Sbjct: 208 LFYVPPKLP--SSLRKLFLSNAKIMNITQEDFKGLENLTLLDLSGNCPRCYNAPFPCTPC 265

Query: 163 LRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYM 211
              S I   P+    LT L  L+L     L  IP     NLS+L+EL++
Sbjct: 266 KENSSIHIHPLAFQSLTQLLYLNL-SSTSLRTIPSTWFENLSNLKELHL 313

Key component of innate and adaptive immunity. TLRs (Toll-like receptors) control host immune response against pathogens through recognition of molecular patterns specific to microorganisms. Acts via MYD88 and TRAF6, leading to NF-kappa-B. activation, cytokine secretion and the inflammatory response.

Mus musculus (taxid: 10090)

>sp|Q80WG5|LRC8A_MOUSE Leucine-rich repeat-containing protein 8A OS=Mus musculus GN=Lrrc8a PE=1 SV=1

 Score = 46.2 bits (108), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 57/98 (58%), Gaps = 6/98 (6%)

Query: 102 IPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITV-IRDLKKLAV 160
           IP + F    ++R ++ S+ NL  LP+ +GLL NLQNL++   ++  +   +   +KL  
Sbjct: 677 IPTQLF-YCRKLRYLDLSHNNLTFLPADIGLLQNLQNLAVTANRIEALPPELFQCRKLRA 735

Query: 161 LCLRGSDIKRLPVEVGELTLLRLLDLR----DCMELEV 194
           L L  + ++ LP  VGELT L  ++LR    +C+ +E+
Sbjct: 736 LHLGNNVLQSLPSRVGELTNLTQIELRGNRLECLPVEL 773

Involved in B-cell development. Required for the pro-B cell to pre-B cell transition.

Mus musculus (taxid: 10090)

>sp|Q4V8I7|LRC8A_RAT Leucine-rich repeat-containing protein 8A OS=Rattus norvegicus GN=Lrrc8a PE=2 SV=1

 Score = 45.8 bits (107), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 57/98 (58%), Gaps = 6/98 (6%)

Query: 102 IPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITV-IRDLKKLAV 160
           IP + F    ++R ++ S+ NL  LP+ +GLL NLQNL++   ++  +   +   +KL  
Sbjct: 677 IPTQLF-YCRKLRYLDLSHNNLTLLPADIGLLQNLQNLAVTANRIEALPPELFQCRKLRA 735

Query: 161 LCLRGSDIKRLPVEVGELTLLRLLDLR----DCMELEV 194
           L L  + ++ LP  VGELT L  ++LR    +C+ +E+
Sbjct: 736 LHLGNNVLQSLPSRVGELTNLTQIELRGNRLECLPVEL 773

Involved in B-cell development (By similarity). Required for the pro-B cell to pre-B cell transition.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	350
224083434	1144	cc-nbs-lrr resistance protein [Populus t	0.937	0.286	0.415	4e-57
359488288	1340	PREDICTED: LOW QUALITY PROTEIN: probable	0.937	0.244	0.410	1e-56
296087872	1152	unnamed protein product [Vitis vinifera]	0.931	0.282	0.420	5e-56
359488027	1520	PREDICTED: disease resistance protein At	0.931	0.214	0.420	6e-56
255563252	1603	Disease resistance protein RPS5, putativ	0.934	0.203	0.398	2e-55
147865073	1694	hypothetical protein VITISV_021876 [Viti	0.934	0.193	0.408	3e-55
224111296	1315	cc-nbs-lrr resistance protein [Populus t	0.934	0.248	0.392	2e-54
255574526	1232	Disease resistance protein RFL1, putativ	0.962	0.273	0.388	1e-53
147777048	1460	hypothetical protein VITISV_009359 [Viti	0.928	0.222	0.397	2e-52
255542484	2460	phosphoprotein phosphatase, putative [Ri	0.94	0.133	0.399	1e-51

>gi|224083434|ref|XP_002307025.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222856474|gb|EEE94021.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  228 bits (580), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 153/368 (41%), Positives = 213/368 (57%), Gaps = 40/368 (10%)

Query: 5   ASIDDLLMYGMGMGLFQGVNKMQVARARAHGLVHKLKACCM---------FSMHDVVRDV 55
           AS  DLL YGMG+GLF G   ++ A+ R H LVHKLKA  +         FSMHD VRDV
Sbjct: 418 ASTRDLLKYGMGLGLFSGFVTVEEAQDRVHSLVHKLKASGLLLENHSDWQFSMHDAVRDV 477

Query: 56  AISIASTEQNVFSATEE-------------------QTNL-LLEVVECPQLELLFICADK 95
           AISIA  + +VF   +E                    +N+ LL  +E PQL+ L + +  
Sbjct: 478 AISIAFRDCHVFVGGDEVEPKWSAKNMLKKYKEIWLSSNIELLREMEYPQLKFLHVRS-- 535

Query: 96  ESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDL 155
           E  SL I +     M +++V+  + ++L+SLPS L  L NL+ L L+   L +I  I +L
Sbjct: 536 EDPSLEISSNICRGMHKLKVLVLTNISLVSLPSPLHFLKNLRTLCLHQSSLGEIADIGEL 595

Query: 156 KKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRS 215
           KKL +L    S+IK LP ++G+LT LR+LDL DC EL+VIPPNI SNLS LEEL MG  S
Sbjct: 596 KKLEILSFAKSNIKHLPRQIGQLTKLRMLDLSDCFELDVIPPNIFSNLSMLEELCMG-NS 654

Query: 216 FDKWEVEVEGVKNASLHE---LKHLISLELQIQDVNTFPRGLFLEKLETFKILIGGVWGW 272
           F  W    EG  NASL E   L HL ++++ + D +   +G+  ++LE F+I IG VW W
Sbjct: 655 FHHW--ATEGEDNASLVELDHLPHLTNVDIHVLDSHVMSKGMLSKRLERFRIFIGDVWDW 712

Query: 273 EYADIWCREFKIDLD-SKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQL 331
           +      R  K+ L+ S   L+ G+++ L+  +DL+L  LE + VN  V+EL   G  QL
Sbjct: 713 DGVYQSLRTLKLKLNTSASNLEHGVLMLLKRTQDLYL--LELKGVNNVVSELDTEGFLQL 770

Query: 332 KHLYIRGS 339
           +HL++  S
Sbjct: 771 RHLHLHNS 778

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488288|ref|XP_003633735.1| PREDICTED: LOW QUALITY PROTEIN: probable disease resistance protein At1g61310-like [Vitis vinifera]

 Score =  226 bits (577), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 151/368 (41%), Positives = 216/368 (58%), Gaps = 40/368 (10%)

Query: 1   YTAIASIDDLLMYGMGMGLFQGVNKMQVARARAHGLVHKLKAC---------CMFSMHDV 51
           ++    I DLL YGMG+ LFQG N ++ A+ R   LV  LKA           +F MHDV
Sbjct: 411 FSNYIDIRDLLKYGMGLRLFQGTNTLEEAKNRIETLVDNLKASNLLLETRYNAVFRMHDV 470

Query: 52  VRDVAISIASTEQNVFSATEEQTNLLLE----VVECPQLELLFI-CAD--------KESS 98
           V++VAI IAS E +VF+    QT + +E    + E  +  ++++ C D          +S
Sbjct: 471 VQNVAIEIASKEHHVFTF---QTGVRMEEWPNMDELQKFTMIYLDCCDIRELPEGLNHNS 527

Query: 99  SLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKL 158
           SL IPN FFE M Q++V++F+ M+L SLPSSL  L+NL+ L L  CKL DIT+I +LKKL
Sbjct: 528 SLKIPNTFFEGMKQLKVLDFTNMHLPSLPSSLHCLANLRTLCLDACKLGDITIIAELKKL 587

Query: 159 AVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDK 218
            +L L  SDI++LP E+ +LT LRLLDL+   +L+VIPP+++S+LS LE+L M   S+ +
Sbjct: 588 EILSLMDSDIEQLPRELSQLTHLRLLDLKGSSKLKVIPPDVISSLSQLEDLCM-ENSYTQ 646

Query: 219 WEVEVEGVKNASLHELKH---LISLELQIQDVNTFPRGLFLEKLETFKILIGGVWGWEYA 275
           W  EVEG  NA L ELKH   L +L++QI D   FP+ +  + L  ++I +G VW WE  
Sbjct: 647 W--EVEGKSNAYLAELKHLSYLTTLDIQIPDAKLFPKDVVFDNLMKYRIFVGDVWSWEEN 704

Query: 276 DIWCREFKI-DLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPS---QL 331
               +  K+ + D+ + L +G+   L   EDL L      D+    N L K+      +L
Sbjct: 705 CETNKTLKLNEFDTSLHLVEGISKLLRXTEDLHL-----HDLRGTTNILSKLDRQCFLKL 759

Query: 332 KHLYIRGS 339
           KHL +  S
Sbjct: 760 KHLNVESS 767

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087872|emb|CBI35155.3| unnamed protein product [Vitis vinifera]

 Score =  224 bits (571), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 155/369 (42%), Positives = 208/369 (56%), Gaps = 43/369 (11%)

Query: 7   IDDLLMYGMGMGLFQGVNKMQVARARAHGLVHKLKACCMF---------SMHDVVRDVAI 57
           IDDLL YGMG+ LFQG N ++ A+ R   LV  LKA  +           MHDVVRDVAI
Sbjct: 237 IDDLLKYGMGLRLFQGTNTLEEAKNRIDTLVDSLKASKLLLDTGHNSFVRMHDVVRDVAI 296

Query: 58  SIASTEQNVFSATEEQ-----------------------TNLLLEVVECPQLELLFICAD 94
           +I S    VFS  E++                         L +E+V CP+LEL F+   
Sbjct: 297 AIVSKVHRVFSLREDELVEWPKMDELQTCTKMSLAYNDICELPIELV-CPELEL-FLFYH 354

Query: 95  KESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRD 154
                L IP  FFE M +++V++ S M+  SLPSSL  L+NL+ LSL  CKL DI++I +
Sbjct: 355 TIDYHLKIPETFFEEMKKLKVLDLSNMHFTSLPSSLRCLTNLRTLSLNWCKLGDISIIVE 414

Query: 155 LKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPR 214
           LKKL      GS+I++LP E+ +LT LRL DLRDC +L  IPPN++S+LS LE L M   
Sbjct: 415 LKKLEFFSFMGSNIEKLPREIAQLTHLRLFDLRDCSKLREIPPNVISSLSKLENLCM-EN 473

Query: 215 SFDKWEVEVEGVKNASLHELK---HLISLELQIQDVNTFPRGLFLEKLETFKILIGGVWG 271
           SF  W  EVEG  NAS+ E K   +L +L++QI D       +  EKL  ++I IG VW 
Sbjct: 474 SFTLW--EVEGKSNASIAEFKYLPYLTTLDIQIPDAELLLTDVLFEKLIRYRIFIGDVWS 531

Query: 272 WEYADIWCREFKID-LDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQ 330
           W+      +  K++ LD+ +RL DG+ L L+G +DL L  L     N F  +L + G  Q
Sbjct: 532 WDKNCPTTKTLKLNKLDTSLRLADGISLLLKGAKDLHLRELSGA-ANVF-PKLDREGFLQ 589

Query: 331 LKHLYIRGS 339
           LK L++  S
Sbjct: 590 LKCLHVERS 598

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488027|ref|XP_002269288.2| PREDICTED: disease resistance protein At4g27190-like [Vitis vinifera]

 Score =  224 bits (570), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 155/369 (42%), Positives = 208/369 (56%), Gaps = 43/369 (11%)

Query: 7   IDDLLMYGMGMGLFQGVNKMQVARARAHGLVHKLKACCMF---------SMHDVVRDVAI 57
           IDDLL YGMG+ LFQG N ++ A+ R   LV  LKA  +           MHDVVRDVAI
Sbjct: 417 IDDLLKYGMGLRLFQGTNTLEEAKNRIDTLVDSLKASKLLLDTGHNSFVRMHDVVRDVAI 476

Query: 58  SIASTEQNVFSATEEQ-----------------------TNLLLEVVECPQLELLFICAD 94
           +I S    VFS  E++                         L +E+V CP+LEL F+   
Sbjct: 477 AIVSKVHRVFSLREDELVEWPKMDELQTCTKMSLAYNDICELPIELV-CPELEL-FLFYH 534

Query: 95  KESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRD 154
                L IP  FFE M +++V++ S M+  SLPSSL  L+NL+ LSL  CKL DI++I +
Sbjct: 535 TIDYHLKIPETFFEEMKKLKVLDLSNMHFTSLPSSLRCLTNLRTLSLNWCKLGDISIIVE 594

Query: 155 LKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPR 214
           LKKL      GS+I++LP E+ +LT LRL DLRDC +L  IPPN++S+LS LE L M   
Sbjct: 595 LKKLEFFSFMGSNIEKLPREIAQLTHLRLFDLRDCSKLREIPPNVISSLSKLENLCM-EN 653

Query: 215 SFDKWEVEVEGVKNASLHELK---HLISLELQIQDVNTFPRGLFLEKLETFKILIGGVWG 271
           SF  W  EVEG  NAS+ E K   +L +L++QI D       +  EKL  ++I IG VW 
Sbjct: 654 SFTLW--EVEGKSNASIAEFKYLPYLTTLDIQIPDAELLLTDVLFEKLIRYRIFIGDVWS 711

Query: 272 WEYADIWCREFKID-LDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQ 330
           W+      +  K++ LD+ +RL DG+ L L+G +DL L  L     N F  +L + G  Q
Sbjct: 712 WDKNCPTTKTLKLNKLDTSLRLADGISLLLKGAKDLHLRELSGA-ANVF-PKLDREGFLQ 769

Query: 331 LKHLYIRGS 339
           LK L++  S
Sbjct: 770 LKCLHVERS 778

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563252|ref|XP_002522629.1| Disease resistance protein RPS5, putative [Ricinus communis] gi|223538105|gb|EEF39716.1| Disease resistance protein RPS5, putative [Ricinus communis]

 Score =  222 bits (566), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 147/369 (39%), Positives = 207/369 (56%), Gaps = 42/369 (11%)

Query: 6   SIDDLLMYGMGMGLFQGVNKMQVARARAHGLVHKLKACCMF---------SMHDVVRDVA 56
           +I DLLMY  G+GLF+G++ +  AR R H L+  LKA C+           +HDVVRDVA
Sbjct: 415 AILDLLMYSTGLGLFKGIDTLGDARNRVHKLISDLKAACLLLDSDIKGRVKIHDVVRDVA 474

Query: 57  ISIASTEQNVFSATE-----------------------EQTNLLLEVVECPQLELLFICA 93
           ISIAS  Q++F+                             + L EV+ECP+LEL  +  
Sbjct: 475 ISIASRMQHLFTVRNGALLKEWPNKDVCKSCTRISLPYNDIHGLPEVLECPELELFLLFT 534

Query: 94  DKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIR 153
             +  SL +P+  FE    +RV+NF+ M+  SLP SLG L NL  L L  C L D+ +I 
Sbjct: 535 --QDISLKVPDLCFELTKNLRVLNFTGMHFSSLPPSLGFLKNLFTLCLDWCALRDVAIIG 592

Query: 154 DLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGP 213
           +L  L +L  + SDI  LP E+ +LT L+ LDL  C++L+VIP  I+S L+ LEELYM  
Sbjct: 593 ELTGLTILSFKHSDIVELPREIRQLTKLKFLDLSHCLKLKVIPAKIISELTQLEELYMN- 651

Query: 214 RSFDKWEVE-VEGVKNASLHELK---HLISLELQIQDVNTFPRGLFLEKLETFKILIGGV 269
            SFD W+V+ +   +NASL EL+   +L +LE+ + D    P+ LF  KLE F+I IG V
Sbjct: 652 NSFDLWDVQGINNQRNASLAELECLPYLTTLEICVLDAKILPKDLFFRKLERFRIFIGDV 711

Query: 270 WGWEYADIWCREFKIDLD-SKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGP 328
           W         R  K+ L+ S I L+ GL + LE  EDL+L+  E + +   + +L   G 
Sbjct: 712 WSGTGDYGTSRTLKLKLNTSSIHLEHGLSILLEVTEDLYLA--EVKGIKSVLYDLDSQGF 769

Query: 329 SQLKHLYIR 337
           +QLKHL ++
Sbjct: 770 TQLKHLDVQ 778

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147865073|emb|CAN83232.1| hypothetical protein VITISV_021876 [Vitis vinifera]

 Score =  221 bits (564), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 151/370 (40%), Positives = 208/370 (56%), Gaps = 43/370 (11%)

Query: 7   IDDLLMYGMGMGLFQGVNKMQVARARAHGLVHKLKAC---------CMFSMHDVVRDVAI 57
           I DLL YGMG+ LFQG N ++ A+ R   LV  LK+           +  MHDVVR VA+
Sbjct: 414 IRDLLKYGMGLRLFQGTNTLEEAKNRIDTLVDNLKSSNLLLETGHNAVVRMHDVVRSVAL 473

Query: 58  SIASTEQNVFSATEEQTNL------------------------LLEVVECPQLELLFICA 93
            I+S + +VF+  +    +                        L E + CP+L+L FIC 
Sbjct: 474 DISSKDHHVFTLQQTTGRVEKWPRIDELQKVIWVNQDECDIHELPEGLVCPKLKL-FICC 532

Query: 94  DKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIR 153
            K +S++ IPN FFE M Q++V++F+ M+L SLPSSL  L+NLQ L LY CKL DI +I 
Sbjct: 533 LKTNSAVKIPNTFFEGMKQLQVLDFTQMHLPSLPSSLQCLANLQTLLLYGCKLGDIGIIT 592

Query: 154 DLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGP 213
           +LKKL +L L  SDI++LP E+ +LT LRLLDL D   ++VIP  ++S+LS LE+L M  
Sbjct: 593 ELKKLEILSLIDSDIEQLPREIAQLTHLRLLDLSDSSTIKVIPSGVISSLSQLEDLCM-E 651

Query: 214 RSFDKWEVEVEGVKNASLHELK---HLISLELQIQDVNTFPRGLFLEKLETFKILIGGVW 270
            SF +W  E EG  NA L ELK   HL SL++QI D    P+ +  E L  ++I +G VW
Sbjct: 652 NSFTQW--EGEGKSNACLAELKHLSHLTSLDIQIPDAKLLPKDVVFENLVRYRIFVGDVW 709

Query: 271 GWEYADIWCREFKI-DLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPS 329
            WE      R  K+   D+ + L DG+   L+  EDL L  L        +++L   G  
Sbjct: 710 IWEENYKTNRTLKLKKFDTSLHLVDGISKLLKITEDLHLREL--CGGTNVLSKLDGEGFF 767

Query: 330 QLKHLYIRGS 339
           +LKHL +  S
Sbjct: 768 KLKHLNVESS 777

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111296|ref|XP_002332952.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222834264|gb|EEE72741.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  219 bits (557), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 145/369 (39%), Positives = 209/369 (56%), Gaps = 42/369 (11%)

Query: 7   IDDLLMYGMGMGLFQGVNKMQVARARAHGLVHKLKACCMF---------SMHDVVRDVAI 57
           I DLL YG+G+ LF+G + ++  R     LV +LKA C+           MHDVV   AI
Sbjct: 410 ISDLLRYGIGLDLFKGCSTLEETRNSLLTLVDELKASCLLLEGDKDGSVKMHDVVHSFAI 469

Query: 58  SIASTEQNVFSATEE----QTNLLLE-----------------VVECPQLELLFICADKE 96
           S+A  + +V +  +E      N +L+                 ++ECP L   F+  +K+
Sbjct: 470 SVALRDHHVLTVADEFKEWPANDVLQQYTAISLPFRKIPDLPAILECPNLNS-FLLLNKD 528

Query: 97  SSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLK 156
            S L IP+ FF  M ++++++ + +NL  LPSSL  L NLQ L L +C L DI++I +L 
Sbjct: 529 PS-LQIPDSFFREMKELKILDLTEVNLSPLPSSLQFLENLQTLCLDHCVLEDISIIGELN 587

Query: 157 KLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSF 216
           KL VL L  S+I RLP E+G++T L+LLDL +C  LEVI PN LS+L+ LE+LYMG  SF
Sbjct: 588 KLKVLSLMSSNIVRLPREIGKVTRLQLLDLSNCERLEVISPNALSSLTRLEDLYMG-NSF 646

Query: 217 DKWEVEVEGVK--NASLHELKH---LISLELQIQDVNTFPRGLF--LEKLETFKILIGGV 269
            KWE E    +  NA L ELKH   L +L +QI D +  P+ LF   + LE F+I IG  
Sbjct: 647 VKWETEGSSSQRNNACLSELKHLSNLSTLHMQITDADNMPKDLFSSFQNLERFRIFIGDG 706

Query: 270 WGWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPS 329
           W W   D   R  K+ L++ I+L++G+   L+  E+L L  L    V   +N+L   G  
Sbjct: 707 WDWSVKDATSRTLKLKLNTVIQLEEGVNTLLKITEELHLQEL--NGVKSILNDLDGEGFP 764

Query: 330 QLKHLYIRG 338
           QL+HL+++ 
Sbjct: 765 QLRHLHVQN 773

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574526|ref|XP_002528174.1| Disease resistance protein RFL1, putative [Ricinus communis] gi|223532386|gb|EEF34181.1| Disease resistance protein RFL1, putative [Ricinus communis]

 Score =  216 bits (550), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 148/381 (38%), Positives = 206/381 (54%), Gaps = 44/381 (11%)

Query: 7   IDDLLMYGMGMGLFQGVNKMQVARARAHGLVHKLKACCMF---------SMHDVVRDVAI 57
           I DLL Y +G+GL      +  AR R H ++ +LK+ C+           +HD+++D A+
Sbjct: 404 IQDLLKYSIGLGLLYDTRTVDYARRRVHAMISELKSSCLLLDGEMNGFVKIHDLIQDFAV 463

Query: 58  SIASTEQNVFS--------------ATEEQTNLLL---------EVVECPQLELLFICAD 94
           SIA  EQ VF+              A +  T + L         EV+E P LE L +   
Sbjct: 464 SIAYREQQVFTINNYIRLEVWPDEDALKSCTRISLPCLNVVKLPEVLESPNLEFLLLST- 522

Query: 95  KESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRD 154
            E  SL IP  FF+ +  ++V++F  M+  SLP SLG L +L+ L L +C L DI +I +
Sbjct: 523 -EEPSLRIPGSFFQGIPILKVLDFCGMSFSSLPPSLGCLEHLRTLCLDHCLLHDIAIIGE 581

Query: 155 LKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPR 214
           LKKL +L    SDI  LP E+GEL+ L+LLDL  C +L V P N+LS L  LEELYM   
Sbjct: 582 LKKLEILTFAHSDIVELPREIGELSRLKLLDLSHCSKLNVFPANVLSRLCLLEELYMA-N 640

Query: 215 SFDKWEVE-VEGVKNASLHE---LKHLISLELQIQDVNTFPRGLFLEKLETFKILIGGVW 270
           SF +W++E +    NASL E   L HL SLE+QI D    PR LF +KL+ +KILIG  W
Sbjct: 641 SFVRWKIEGLMNQSNASLDELVLLSHLTSLEIQILDARILPRDLFTKKLQRYKILIGDEW 700

Query: 271 GWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQ 330
            W   D   R  K+ L++ I  +  +   LEG +DL L+  + + VN  +  L   G  Q
Sbjct: 701 DWNGHDETSRVLKLKLNTSIHSEYEVNQFLEGTDDLSLA--DARGVNSILYNLNSEGFPQ 758

Query: 331 LKHLYIRGS---HLTLNPAES 348
           LK L ++     H  +N +ES
Sbjct: 759 LKRLIVQNCPEIHCLVNASES 779

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147777048|emb|CAN65562.1| hypothetical protein VITISV_009359 [Vitis vinifera]

 Score =  212 bits (540), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 148/372 (39%), Positives = 206/372 (55%), Gaps = 47/372 (12%)

Query: 7   IDDLLMYGMGMGLFQGVNKMQVARARAHGLVHKLKAC---------CMFSMHDVVRDVAI 57
           I DLL YG+G+ LFQG N ++ A+ R   LV KLK+           +  MHD+VR  A 
Sbjct: 414 ISDLLKYGVGLRLFQGTNTLEEAKNRIDTLVDKLKSSNFLLETGHNAVVRMHDLVRSTAR 473

Query: 58  SIASTEQNVFSATEEQTNL--------------------------LLEVVECPQLELLFI 91
            IAS + +VF  T ++T +                          L E + CP+LEL F 
Sbjct: 474 KIASEQLHVF--THQKTTVRVEEWPRTDELQKVTWVSLGDCDIHELPEGLLCPELEL-FQ 530

Query: 92  CADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITV 151
           C  K SS++ IP+ FFE M Q+ V++FS M L SLP SL  L+NL+ L L  CKL DI +
Sbjct: 531 CYQKTSSAVKIPHTFFEGMKQLEVLDFSNMQLPSLPLSLQCLANLRTLCLDGCKLGDIVI 590

Query: 152 IRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYM 211
           I  LKKL +L L  SDI++LP E+ +LT LRL DL+D  +L+VIPP+++S+L  LE+L M
Sbjct: 591 IAKLKKLEILSLIDSDIEQLPREIAQLTHLRLFDLKDSSKLKVIPPDVISSLFRLEDLCM 650

Query: 212 GPRSFDKWEVEVEGVKNASLHELK---HLISLELQIQDVNTFPRGLFLEKLETFKILIGG 268
              SF +W  E EG  NA L ELK   HL SL++QI D    P+ +  E L  ++I +G 
Sbjct: 651 -ENSFTQW--EGEGKSNACLAELKHLSHLTSLDIQIPDAKLLPKDIVFENLVRYRIFVGN 707

Query: 269 VWGWEYADIWCREFKID-LDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVG 327
           VW W+         K++  D+ + L DG+   L+  EDL L  L        +++L + G
Sbjct: 708 VWSWKEIFKANSTLKLNKFDTSLHLVDGISKLLKRTEDLHLREL--CGGTNVLSKLNREG 765

Query: 328 PSQLKHLYIRGS 339
             +LKHL +  S
Sbjct: 766 FLKLKHLNVESS 777

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542484|ref|XP_002512305.1| phosphoprotein phosphatase, putative [Ricinus communis] gi|223548266|gb|EEF49757.1| phosphoprotein phosphatase, putative [Ricinus communis]

 Score =  209 bits (533), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 147/368 (39%), Positives = 202/368 (54%), Gaps = 39/368 (10%)

Query: 7   IDDLLMYGMGMGLFQGVNKMQVARARAHGLVHKLKACCMF---------SMHDVVRDVAI 57
           + DLL Y +G+GLF     ++ AR R   +V+ LK  C+           MHDVV + A 
Sbjct: 365 VSDLLKYSLGLGLFNQRTTVKAARNRLLKVVNDLKRSCLLLEGDDDDEVRMHDVVHNFAT 424

Query: 58  SIASTEQNVFSAT--------------EEQTNLLLEVVECPQLELLFICADKES------ 97
            +AS + +VF+                E+ T + L   + P+L  +F C D +S      
Sbjct: 425 LVASRDHHVFAVACDSGLEEWPEKDILEQFTAISLPDCKIPKLPEVFECPDLQSFLLYNK 484

Query: 98  -SSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLK 156
            SSL IP+ FF RM ++++++ S ++L  +P SL  L NLQ L L  C L DI  I +LK
Sbjct: 485 DSSLKIPDNFFSRMKKLKLMDLSNVHLSPMPLSLQCLENLQTLCLDRCTLEDIAAIGELK 544

Query: 157 KLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSF 216
           KL VL   GS + +LP EVG+LT L+LLDL  C +LEVIP  +LS L+ LEELYMG  SF
Sbjct: 545 KLQVLSFIGSTMVQLPREVGKLTRLQLLDLSRCQKLEVIPKGVLSCLTKLEELYMG-NSF 603

Query: 217 DKWEVEVE--GVKNASLHELK---HLISLELQIQDVNTFPRGLFLEKLETFKILIGGVWG 271
            +WE E       NASL ELK   +L++LEL I +    PR +F EKL+ +K+ IG  W 
Sbjct: 604 VQWESEEHDGDRNNASLDELKLLPNLVTLELHIINAEILPRDVFSEKLDLYKVFIGEEWS 663

Query: 272 WEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQL 331
           W       R  K+ L+S I ++   +L L   EDL+L  LE   V   + EL   G  QL
Sbjct: 664 WFGKYEASRTLKLKLNSSIEIEKVKVL-LMTTEDLYLDELE--GVRNVLYELDGQGFPQL 720

Query: 332 KHLYIRGS 339
           KHL+I+ S
Sbjct: 721 KHLHIQNS 728

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	350
TAIR|locus:2131689	919	AT4G27220 [Arabidopsis thalian	0.534	0.203	0.246	1.1e-05

TAIR|locus:2131689 AT4G27220 [Arabidopsis thaliana (taxid:3702)]

 Score = 107 (42.7 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
 Identities = 48/195 (24%), Positives = 78/195 (40%)

Query:    61 STEQNVFSATEEQTNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSY 120
             S+ Q V     +   L   V+E   +E L +     S    +PN F +    +R+++ S 
Sbjct:   470 SSVQRVSLMANKLERLPNNVIE--GVETLVLLLQGNSHVKEVPNGFLQAFPNLRILDLSG 527

Query:   121 MXXXXXXXXXXXXXXXXXXXXYNCKLL-DITVIRDLKKLAVLCLRGSDIKRLPVEVGEXX 179
             +                     NCK L ++  +  L KL  L L  S I+ LP  +    
Sbjct:   528 VRIRTLPDSFSNLHSLRSLVLRNCKKLRNLPSLESLVKLQFLDLHESAIRELPRGLEALS 587

Query:   180 XXXXXXXXXCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKN-ASLHE---LK 235
                        +L+ IP   +  LS LE L M   ++  W ++ E  +  A+L E   L 
Sbjct:   588 SLRYICVSNTYQLQSIPAGTILQLSSLEVLDMAGSAYS-WGIKGEEREGQATLDEVTCLP 646

Query:   236 HLISLELQIQDVNTF 250
             HL  L +++ DV +F
Sbjct:   647 HLQFLAIKLLDVLSF 661

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00050016 cc-nbs-lrr resistance protein (1144 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	350
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	8e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.002
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	0.004

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 46.9 bits (111), Expect = 8e-06
 Identities = 35/101 (34%), Positives = 53/101 (52%), Gaps = 3/101 (2%)

Query: 111 IQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDI-TVIRDLKKLAVLCLRGSDIK 169
             ++ ++ S   + SLPS L  L NL+NL L    L D+  ++ +L  L  L L G+ I 
Sbjct: 140 SNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKIS 199

Query: 170 RLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELY 210
            LP E+  L+ L  LDL +   +E++    LSNL +L  L 
Sbjct: 200 DLPPEIELLSALEELDLSNNSIIELLSS--LSNLKNLSGLE 238

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 45.0 bits (106), Expect = 3e-05
 Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 7/123 (5%)

Query: 122 NLLSLPSSLGLL-SNLQNLSLYNCKLLDI-TVIRDLKKLAVLCLRGSDIKRLPVEVGELT 179
           N+  +P  +GLL SNL+ L L + K+  + + +R+L  L  L L  +D+  LP  +  L+
Sbjct: 127 NITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLS 186

Query: 180 LLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLIS 239
            L  LDL    ++  +PP I   LS LEEL +   S +     +  + N        L +
Sbjct: 187 NLNNLDLSGN-KISDLPPEI-ELLSALEELDL---SNNSIIELLSSLSNLKNLSGLELSN 241

Query: 240 LEL 242
            +L
Sbjct: 242 NKL 244

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 39.2 bits (91), Expect = 0.002
 Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 4/90 (4%)

Query: 122 NLLSLPSSLGLLSNLQNLSL-YNCKLLDITVIRDLKKLAVLCLRGSDIKRLPVEVGELTL 180
            +  LP  + LLS L+ L L  N  +  ++ + +LK L+ L L  + ++ LP  +G L+ 
Sbjct: 197 KISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSN 256

Query: 181 LRLLDLRDCMELEVIPPNILSNLSHLEELY 210
           L  LDL +     +   + L +L++L EL 
Sbjct: 257 LETLDLSNNQ---ISSISSLGSLTNLRELD 283

Length = 394

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 34.4 bits (80), Expect = 0.004
 Identities = 13/39 (33%), Positives = 20/39 (51%)

Query: 135 NLQNLSLYNCKLLDITVIRDLKKLAVLCLRGSDIKRLPV 173
           NL+ L L N ++ D+  + +L  L  L L G+ I  L  
Sbjct: 2   NLETLDLSNNQITDLPPLSNLPNLETLDLSGNKITDLSP 40

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	350
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.93
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.9
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.89
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.87
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.86
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.86
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.85
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.85
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.85
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.78
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.77
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.72
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.72
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.67
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.65
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.65
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.63
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.62
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.6
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.58
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.55
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.5
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.48
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.34
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.32
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.27
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.15
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.12
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.11
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.08
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.07
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.05
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.99
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.93
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.85
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.81
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.68
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.65
PLN03150	623	hypothetical protein; Provisional	98.64
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.56
PLN03150	623	hypothetical protein; Provisional	98.56
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.54
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.46
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.46
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.38
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.32
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.3
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.25
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.18
PRK15386	426	type III secretion protein GogB; Provisional	98.18
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.07
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.02
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.98
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.97
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.96
PRK15386	426	type III secretion protein GogB; Provisional	97.91
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.88
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.85
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.64
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.4
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.4
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.3
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.18
KOG4341	483	consensus F-box protein containing LRR [General fu	97.15
KOG4341	483	consensus F-box protein containing LRR [General fu	96.92
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.74
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	96.44
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.33
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.27
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.07
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.9
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.57
smart00370	26	LRR Leucine-rich repeats, outliers.	93.16
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	93.16
KOG1947	482	consensus Leucine rich repeat proteins, some prote	92.68
KOG0473	326	consensus Leucine-rich repeat protein [Function un	91.07
KOG3864	221	consensus Uncharacterized conserved protein [Funct	90.78
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	90.62
smart00370	26	LRR Leucine-rich repeats, outliers.	90.62
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	88.82
KOG3864	221	consensus Uncharacterized conserved protein [Funct	87.72
KOG0473	326	consensus Leucine-rich repeat protein [Function un	87.67
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	84.18
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	82.66
KOG4308	478	consensus LRR-containing protein [Function unknown	81.57

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.93  E-value=5.3e-26  Score=221.48  Aligned_cols=329  Identities=20%  Similarity=0.212  Sum_probs=205.9

Q ss_pred             CCCC--CCHHHHHHHHHhccCCCCCChHHHHHHHHHHHHHHHHhcCC------------ccchhhHHHHHHHHhc-----
Q 037732            1 YTAI--ASIDDLLMYGMGMGLFQGVNKMQVARARAHGLVHKLKACCM------------FSMHDVVRDVAISIAS-----   61 (350)
Q Consensus         1 ~~~~--i~~~~l~~~w~a~g~~~~~~~~~~~~~~~~~~~~~l~~~~~------------~~~h~l~~d~~~~~~~-----   61 (350)
                      ||++  |++++++.+|+||||+++.+..+.+++.+.+|+++|+.+++            |+|||+++||+.+++.     
T Consensus       422 FPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~  501 (889)
T KOG4658|consen  422 FPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQ  501 (889)
T ss_pred             CCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhcccccc
Confidence            6777  99999999999999998866556677777788888777776            9999999999999999     


Q ss_pred             cccceeeecccccccccccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCc--CcCCCc-cccCcccccE
Q 037732           62 TEQNVFSATEEQTNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMN--LLSLPS-SLGLLSNLQN  138 (350)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~lp~-~l~~l~~L~~  138 (350)
                      +|+.+.. .+......|...+...+|+..+   -++....++..  ..+++|++|-+.++.  +..++. .|..++.|++
T Consensus       502 ~e~~iv~-~~~~~~~~~~~~~~~~~rr~s~---~~~~~~~~~~~--~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrV  575 (889)
T KOG4658|consen  502 EENQIVS-DGVGLSEIPQVKSWNSVRRMSL---MNNKIEHIAGS--SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRV  575 (889)
T ss_pred             ccceEEE-CCcCccccccccchhheeEEEE---eccchhhccCC--CCCCccceEEEeecchhhhhcCHHHHhhCcceEE
Confidence            6663332 2234555666666677777777   33334444442  246678888887774  444444 3667888888


Q ss_pred             EEecCCC-CCC-chhhhccCCCcEEEecCCCCccccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCC
Q 037732          139 LSLYNCK-LLD-ITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSF  216 (350)
Q Consensus       139 L~l~~~~-l~~-~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  216 (350)
                      ||+++|. +.. |..++.+.+|++|+++++.+..+|.++++++.|.+|++..+.....+|. +...+++|++|.+.....
T Consensus       576 LDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~-i~~~L~~Lr~L~l~~s~~  654 (889)
T KOG4658|consen  576 LDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPG-ILLELQSLRVLRLPRSAL  654 (889)
T ss_pred             EECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccc-hhhhcccccEEEeecccc
Confidence            8888774 455 7888888888888888888888888888888888888887666555543 356688888887765441


Q ss_pred             CcchhhhccccccchhhcCCCceeEEEecCCCCCCccc-ccCCcc----EEEE---EEcCcccccccCccceEEEEeCCC
Q 037732          217 DKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRGL-FLEKLE----TFKI---LIGGVWGWEYADIWCREFKIDLDS  288 (350)
Q Consensus       217 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~-~~~~L~----~L~l---~~~~~~~~~~~~~~L~~L~l~~~~  288 (350)
                      ..     .......+.++.+|+.+.+..... .+...+ ....|.    .+.+   ........+..+.+|+.|.+....
T Consensus       655 ~~-----~~~~l~el~~Le~L~~ls~~~~s~-~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~  728 (889)
T KOG4658|consen  655 SN-----DKLLLKELENLEHLENLSITISSV-LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCG  728 (889)
T ss_pred             cc-----chhhHHhhhcccchhhheeecchh-HhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCC
Confidence            11     122333455566666666644443 111111 222222    1111   111122345566777777777644


Q ss_pred             cccchH-----HHHH-HhcccceeeeccccccchhhhhhhhcccCcCcceEEEEeCccceeccCC
Q 037732          289 KIRLKD-----GLIL-KLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLTLNPAE  347 (350)
Q Consensus       289 ~~~~~~-----~~~~-~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~p~~  347 (350)
                      ..+...     .... .|+++..+.+.  ++...+.+. +.  .-.|+|+.|.+..|+..+.|..
T Consensus       729 ~~e~~~~~~~~~~~~~~f~~l~~~~~~--~~~~~r~l~-~~--~f~~~L~~l~l~~~~~~e~~i~  788 (889)
T KOG4658|consen  729 ISEIVIEWEESLIVLLCFPNLSKVSIL--NCHMLRDLT-WL--LFAPHLTSLSLVSCRLLEDIIP  788 (889)
T ss_pred             CchhhcccccccchhhhHHHHHHHHhh--ccccccccc-hh--hccCcccEEEEecccccccCCC
Confidence            332110     0111 14455555554  332221121 12  2358888888888877776653

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.90  E-value=1.6e-23  Score=212.66  Aligned_cols=246  Identities=22%  Similarity=0.255  Sum_probs=129.0

Q ss_pred             cCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcC-CCccccCcccccEEEecCCCCCC--chhhhccC
Q 037732           80 VVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLS-LPSSLGLLSNLQNLSLYNCKLLD--ITVIRDLK  156 (350)
Q Consensus        80 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~  156 (350)
                      +..+++|+.|++  +.+...+.+|..++..+.+|++|++++|.+.. +|.  +.+++|++|++++|.+..  +..++.++
T Consensus        89 ~~~l~~L~~L~L--s~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~  164 (968)
T PLN00113         89 IFRLPYIQTINL--SNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFS  164 (968)
T ss_pred             HhCCCCCCEEEC--CCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCC
Confidence            446677777777  55555556776666566777777776666542 332  234445555555554443  34444555


Q ss_pred             CCcEEEecCCCCc-cccccccCCCCccEEeccCCCCCC------------------------ccCcchhCCCCCCcEEEc
Q 037732          157 KLAVLCLRGSDIK-RLPVEVGELTLLRLLDLRDCMELE------------------------VIPPNILSNLSHLEELYM  211 (350)
Q Consensus       157 ~L~~L~l~~~~~~-~lp~~l~~l~~L~~L~l~~~~~~~------------------------~~~~~~l~~l~~L~~L~l  211 (350)
                      +|++|++++|.+. .+|..+.++++|++|++++|....                        .+|.. ++++++|++|++
T Consensus       165 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L  243 (968)
T PLN00113        165 SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDL  243 (968)
T ss_pred             CCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEEC
Confidence            5555555544433 344444444445555444443333                        34433 344444555554


Q ss_pred             CCCCCCcchhhhccccccchhhcCCCceeEEEecCCC-CCCccc-ccCCccEEEEEEcC----cccccccCccceEEEEe
Q 037732          212 GPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVN-TFPRGL-FLEKLETFKILIGG----VWGWEYADIWCREFKID  285 (350)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~l~~~~-~~~~L~~L~l~~~~----~~~~~~~~~~L~~L~l~  285 (350)
                      ++|.+       .+..|..++++++|+.|+++.|.+. .+|..+ .+++|++|++..+.    .+.++..+++|+.|+++
T Consensus       244 ~~n~l-------~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~  316 (968)
T PLN00113        244 VYNNL-------TGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLF  316 (968)
T ss_pred             cCcee-------ccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECC
Confidence            44444       3344455555555555555555543 344444 45555665554332    22344555666666666


Q ss_pred             CCCcc-cchHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEeCccce
Q 037732          286 LDSKI-RLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLT  342 (350)
Q Consensus       286 ~~~~~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~  342 (350)
                      +|... ..|..+.. +++|+.|++++|.+.+.  +|..+  ..+++|+.|++++|.++
T Consensus       317 ~n~~~~~~~~~~~~-l~~L~~L~L~~n~l~~~--~p~~l--~~~~~L~~L~Ls~n~l~  369 (968)
T PLN00113        317 SNNFTGKIPVALTS-LPRLQVLQLWSNKFSGE--IPKNL--GKHNNLTVLDLSTNNLT  369 (968)
T ss_pred             CCccCCcCChhHhc-CCCCCEEECcCCCCcCc--CChHH--hCCCCCcEEECCCCeeE
Confidence            54433 23333333 46666666666666542  55555  45666666666666655

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.89  E-value=9.7e-23  Score=206.93  Aligned_cols=248  Identities=22%  Similarity=0.261  Sum_probs=165.3

Q ss_pred             CCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCc-CCCccccCcccccEEEecCCCCCC--chhhhccCC
Q 037732           81 VECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLL-SLPSSLGLLSNLQNLSLYNCKLLD--ITVIRDLKK  157 (350)
Q Consensus        81 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~  157 (350)
                      ..+++|++|++  +.+.....+|.. +..+++|++|++++|.+. .+|..++++++|++|++++|.+..  |..++++++
T Consensus       137 ~~l~~L~~L~L--s~n~~~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~  213 (968)
T PLN00113        137 GSIPNLETLDL--SNNMLSGEIPND-IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKS  213 (968)
T ss_pred             cccCCCCEEEC--cCCcccccCChH-HhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCC
Confidence            35667777777  555555566665 357888888888888776 577788888888888888888765  677888888


Q ss_pred             CcEEEecCCCCc-cccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCC
Q 037732          158 LAVLCLRGSDIK-RLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKH  236 (350)
Q Consensus       158 L~~L~l~~~~~~-~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~  236 (350)
                      |++|++++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++++|.+       .+..|..+.++++
T Consensus       214 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l-------~~~~p~~l~~l~~  285 (968)
T PLN00113        214 LKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQNKL-------SGPIPPSIFSLQK  285 (968)
T ss_pred             ccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChh-HhCCCCCCEEECcCCee-------eccCchhHhhccC
Confidence            888888888776 67778888888888888887666667766 78888888888888776       4455666666667


Q ss_pred             CceeEEEecCCC-CCCccc-ccCCccEEEEEEcC----cccccccCccceEEEEeCCCcc-cchHHHHHHhcccceeeec
Q 037732          237 LISLELQIQDVN-TFPRGL-FLEKLETFKILIGG----VWGWEYADIWCREFKIDLDSKI-RLKDGLILKLEGIEDLWLS  309 (350)
Q Consensus       237 L~~L~l~~~~~~-~l~~~~-~~~~L~~L~l~~~~----~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~L~  309 (350)
                      |+.|+++.|.+. .+|..+ .+++|+.|++..+.    .+..+..+++|+.|++++|... .+|..+.. +++|+.|+++
T Consensus       286 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~-~~~L~~L~Ls  364 (968)
T PLN00113        286 LISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGK-HNNLTVLDLS  364 (968)
T ss_pred             cCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhC-CCCCcEEECC
Confidence            777777666654 344444 45566666654332    2223445555555555554332 33333332 2455555555


Q ss_pred             ccc------------------------ccchhhhhhhhcccCcCcceEEEEeCccceec
Q 037732          310 YLE------------------------EQDVNYFVNELVKVGPSQLKHLYIRGSHLTLN  344 (350)
Q Consensus       310 ~n~------------------------l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~  344 (350)
                      +|.                        +.+.  +|..+  ..+++|+.|++++|+++..
T Consensus       365 ~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~--~p~~~--~~~~~L~~L~L~~n~l~~~  419 (968)
T PLN00113        365 TNNLTGEIPEGLCSSGNLFKLILFSNSLEGE--IPKSL--GACRSLRRVRLQDNSFSGE  419 (968)
T ss_pred             CCeeEeeCChhHhCcCCCCEEECcCCEeccc--CCHHH--hCCCCCCEEECcCCEeeeE
Confidence            444                        4432  44455  5677888888888877743

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.87  E-value=9e-24  Score=190.20  Aligned_cols=265  Identities=20%  Similarity=0.240  Sum_probs=220.5

Q ss_pred             cceeeecccccccccc-cCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEec
Q 037732           64 QNVFSATEEQTNLLLE-VVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLY  142 (350)
Q Consensus        64 ~~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~  142 (350)
                      -.++.++.+++.++|. +...+++-.|++   +++.+.++|.++|.++..|-+|+|++|.+..+|+.+.++.+|+.|+++
T Consensus       105 Lt~lDLShNqL~EvP~~LE~AKn~iVLNL---S~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls  181 (1255)
T KOG0444|consen  105 LTILDLSHNQLREVPTNLEYAKNSIVLNL---SYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLS  181 (1255)
T ss_pred             ceeeecchhhhhhcchhhhhhcCcEEEEc---ccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcC
Confidence            3456667778888874 446677888888   455678888888888888889999999888899988999999999999


Q ss_pred             CCCCCC--chhhhccCCCcEEEecCCCCc--cccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCc
Q 037732          143 NCKLLD--ITVIRDLKKLAVLCLRGSDIK--RLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDK  218 (350)
Q Consensus       143 ~~~l~~--~~~l~~l~~L~~L~l~~~~~~--~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  218 (350)
                      +|++.-  +..+..+++|++|.+++++-+  .+|.++..+.+|+.++++. +.+..+|.. +.++++|+.|++++|.++.
T Consensus       182 ~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~-N~Lp~vPec-ly~l~~LrrLNLS~N~ite  259 (1255)
T KOG0444|consen  182 NNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE-NNLPIVPEC-LYKLRNLRRLNLSGNKITE  259 (1255)
T ss_pred             CChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccc-cCCCcchHH-HhhhhhhheeccCcCceee
Confidence            988765  677777888888988887443  7888999999999999988 667778887 7899999999999998854


Q ss_pred             chhhhccccccchhhcCCCceeEEEecCCCCCCccc-ccCCccEEEEE-----EcCcccccccCccceEEEEeCCCcccc
Q 037732          219 WEVEVEGVKNASLHELKHLISLELQIQDVNTFPRGL-FLEKLETFKIL-----IGGVWGWEYADIWCREFKIDLDSKIRL  292 (350)
Q Consensus       219 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~-~~~~L~~L~l~-----~~~~~~~~~~~~~L~~L~l~~~~~~~~  292 (350)
                      ..        ...+...+|++|.++.|.+..+|+.+ .+++|+.|-..     ..++++=++.+..|+.+..++|...-.
T Consensus       260 L~--------~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElV  331 (1255)
T KOG0444|consen  260 LN--------MTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELV  331 (1255)
T ss_pred             ee--------ccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccC
Confidence            33        34566778999999999999999998 78888887653     445677778888999999999999999


Q ss_pred             hHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEeCccceeccCC
Q 037732          293 KDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLTLNPAE  347 (350)
Q Consensus       293 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~p~~  347 (350)
                      |+++.+ |+.|+.|.|++|++..   +|..+  +-++.|+.|++..|+-...|+.
T Consensus       332 PEglcR-C~kL~kL~L~~NrLiT---LPeaI--HlL~~l~vLDlreNpnLVMPPK  380 (1255)
T KOG0444|consen  332 PEGLCR-CVKLQKLKLDHNRLIT---LPEAI--HLLPDLKVLDLRENPNLVMPPK  380 (1255)
T ss_pred             chhhhh-hHHHHHhcccccceee---chhhh--hhcCCcceeeccCCcCccCCCC
Confidence            999987 7999999999999988   78888  7799999999999998888875

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.86  E-value=5.3e-23  Score=183.70  Aligned_cols=263  Identities=16%  Similarity=0.167  Sum_probs=188.1

Q ss_pred             eeccccccccc--ccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCc-cccCcccccEEEecCC
Q 037732           68 SATEEQTNLLL--EVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPS-SLGLLSNLQNLSLYNC  144 (350)
Q Consensus        68 ~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~  144 (350)
                      .++.+.+..++  .++.-.+++.|++   .++.+..+..+.|..+.+|..|.|+.|.++.+|. .|.++++|+.|+|.+|
T Consensus       155 DLSrN~is~i~~~sfp~~~ni~~L~L---a~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN  231 (873)
T KOG4194|consen  155 DLSRNLISEIPKPSFPAKVNIKKLNL---ASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRN  231 (873)
T ss_pred             hhhhchhhcccCCCCCCCCCceEEee---ccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccc
Confidence            34445555554  3444567788888   4455566665556777888888888888887766 4566888888888888


Q ss_pred             CCCC--chhhhccCCCcEEEecCCCCccccc-cccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchh
Q 037732          145 KLLD--ITVIRDLKKLAVLCLRGSDIKRLPV-EVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEV  221 (350)
Q Consensus       145 ~l~~--~~~l~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  221 (350)
                      .+..  .-.+..+++|+.|.+..|.+..+.. .+..|.++++|+++. +.+..+..+-+.+++.|+.|+++.|.+     
T Consensus       232 ~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~-N~l~~vn~g~lfgLt~L~~L~lS~NaI-----  305 (873)
T KOG4194|consen  232 RIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLET-NRLQAVNEGWLFGLTSLEQLDLSYNAI-----  305 (873)
T ss_pred             ceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeeccc-chhhhhhcccccccchhhhhccchhhh-----
Confidence            7766  3556778888888888888887765 467888888888888 445555544477888888888888887     


Q ss_pred             hhccccccchhhcCCCceeEEEecCCCCCCccc--ccCCccEEEEEEcCccc----ccccCccceEEEEeCCCccc---c
Q 037732          222 EVEGVKNASLHELKHLISLELQIQDVNTFPRGL--FLEKLETFKILIGGVWG----WEYADIWCREFKIDLDSKIR---L  292 (350)
Q Consensus       222 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~----~~~~~~~L~~L~l~~~~~~~---~  292 (350)
                        ....++++.-.++|+.|+++.|.+..++++.  .+..|+.|++..+.+-.    .+..+.+|+.|++++|....   .
T Consensus       306 --~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IED  383 (873)
T KOG4194|consen  306 --QRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIED  383 (873)
T ss_pred             --heeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEec
Confidence              5566677778888888888888888877766  57788888887665432    35677888888888864433   2


Q ss_pred             hHHHHHHhcccceeeeccccccchhhhh-hhhcccCcCcceEEEEeCccceeccC
Q 037732          293 KDGLILKLEGIEDLWLSYLEEQDVNYFV-NELVKVGPSQLKHLYIRGSHLTLNPA  346 (350)
Q Consensus       293 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~-~~l~~~~~~~L~~L~l~~~~~~~~p~  346 (350)
                      ....+..+++|+.|++.+|++..   ++ .++  .++++|++|+|.+|.+..+-+
T Consensus       384 aa~~f~gl~~LrkL~l~gNqlk~---I~krAf--sgl~~LE~LdL~~NaiaSIq~  433 (873)
T KOG4194|consen  384 AAVAFNGLPSLRKLRLTGNQLKS---IPKRAF--SGLEALEHLDLGDNAIASIQP  433 (873)
T ss_pred             chhhhccchhhhheeecCceeee---cchhhh--ccCcccceecCCCCcceeecc
Confidence            22234447888888888888877   44 445  678888888888888776543

>PLN03210 Resistant to P

Probab=99.86  E-value=1.7e-20  Score=191.52  Aligned_cols=219  Identities=21%  Similarity=0.322  Sum_probs=135.5

Q ss_pred             HHHHHhcCC-------ccchhhHHHHHHHHhcccc------ceeeeccc----------------------ccccc----
Q 037732           37 VHKLKACCM-------FSMHDVVRDVAISIASTEQ------NVFSATEE----------------------QTNLL----   77 (350)
Q Consensus        37 ~~~l~~~~~-------~~~h~l~~d~~~~~~~~~~------~~~~~~~~----------------------~~~~~----   77 (350)
                      ++.|+.+++       +.|||++|+|+.+++.++.      .++....+                      .+..+    
T Consensus       472 l~~L~~ksLi~~~~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~  551 (1153)
T PLN03210        472 LKNLVDKSLIHVREDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHE  551 (1153)
T ss_pred             hHHHHhcCCEEEcCCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecH
Confidence            555666666       8999999999999987542      11111100                      00000    


Q ss_pred             cccCCCCCccEEEecccC----CccccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCC-chhh
Q 037732           78 LEVVECPQLELLFICADK----ESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLD-ITVI  152 (350)
Q Consensus        78 ~~~~~~~~L~~L~l~~~~----~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~-~~~l  152 (350)
                      ..+.++++|+.|.++...    +.....+|..+..-..+|+.|.+.++.+..+|..+ ...+|+.|+++++.+.. +..+
T Consensus       552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~  630 (1153)
T PLN03210        552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGV  630 (1153)
T ss_pred             HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccccccccc
Confidence            023456777777762111    01122345443322345777777777777777766 45777888888777766 5666


Q ss_pred             hccCCCcEEEecCC-CCccccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccch
Q 037732          153 RDLKKLAVLCLRGS-DIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASL  231 (350)
Q Consensus       153 ~~l~~L~~L~l~~~-~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l  231 (350)
                      ..+++|+.++++++ .+..+| .+..+++|+.|++++|..+..+|.. ++++++|+.|++++|..       .+.+|..+
T Consensus       631 ~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~L~~c~~-------L~~Lp~~i  701 (1153)
T PLN03210        631 HSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSS-IQYLNKLEDLDMSRCEN-------LEILPTGI  701 (1153)
T ss_pred             ccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchh-hhccCCCCEEeCCCCCC-------cCccCCcC
Confidence            77778888888766 455666 4667778888888777777777776 67777888888877654       33444433


Q ss_pred             hhcCCCceeEEEecC-CCCCCcccccCCccEEEEEEcC
Q 037732          232 HELKHLISLELQIQD-VNTFPRGLFLEKLETFKILIGG  268 (350)
Q Consensus       232 ~~l~~L~~L~l~~~~-~~~l~~~~~~~~L~~L~l~~~~  268 (350)
                       ++++|+.|++++|. +..+|..  ..+|+.|.+..+.
T Consensus       702 -~l~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~  736 (1153)
T PLN03210        702 -NLKSLYRLNLSGCSRLKSFPDI--STNISWLDLDETA  736 (1153)
T ss_pred             -CCCCCCEEeCCCCCCccccccc--cCCcCeeecCCCc
Confidence             56777788777764 3344433  4566666664433

syringae 6; Provisional

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.85  E-value=4.5e-22  Score=177.84  Aligned_cols=269  Identities=18%  Similarity=0.212  Sum_probs=181.0

Q ss_pred             eeecccccccccccCCC-CCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCc-cccCcccccEEEecCC
Q 037732           67 FSATEEQTNLLLEVVEC-PQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPS-SLGLLSNLQNLSLYNC  144 (350)
Q Consensus        67 ~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~  144 (350)
                      +.+..+.+..+|.+... .+++.|.+   .++.+.++...-.+.++.|++|||+.|.+..+|. +|..-.++++|+|++|
T Consensus       107 v~l~~N~Lt~IP~f~~~sghl~~L~L---~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N  183 (873)
T KOG4194|consen  107 VNLNKNELTRIPRFGHESGHLEKLDL---RHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASN  183 (873)
T ss_pred             eeeccchhhhcccccccccceeEEee---eccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccc
Confidence            44566677777766543 44888888   5666666666556677888888888888776655 3555567888888888


Q ss_pred             CCCC--chhhhccCCCcEEEecCCCCcccccc-ccCCCCccEEeccCCC-----------------------CCCccCcc
Q 037732          145 KLLD--ITVIRDLKKLAVLCLRGSDIKRLPVE-VGELTLLRLLDLRDCM-----------------------ELEVIPPN  198 (350)
Q Consensus       145 ~l~~--~~~l~~l~~L~~L~l~~~~~~~lp~~-l~~l~~L~~L~l~~~~-----------------------~~~~~~~~  198 (350)
                      +++.  ...+..+.+|-+|.++.|+++.+|.. +.++++|+.|++..|.                       .+..+..+
T Consensus       184 ~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG  263 (873)
T KOG4194|consen  184 RITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDG  263 (873)
T ss_pred             cccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCc
Confidence            8776  45666666777777777777777763 4557777777776622                       12222222


Q ss_pred             hhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCCCCCCccc--ccCCccEEEEEEcCccc----c
Q 037732          199 ILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRGL--FLEKLETFKILIGGVWG----W  272 (350)
Q Consensus       199 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~----~  272 (350)
                      .+..|..+++|+++.|++.       ..-..++.++..|+.|+++.|.+..+...-  ++++|+.|++..+.+-+    .
T Consensus       264 ~Fy~l~kme~l~L~~N~l~-------~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~s  336 (873)
T KOG4194|consen  264 AFYGLEKMEHLNLETNRLQ-------AVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGS  336 (873)
T ss_pred             ceeeecccceeecccchhh-------hhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhH
Confidence            3334444555555544442       222345667777778888888776554333  67888888887666533    4


Q ss_pred             cccCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccch-hhhhhhhcccCcCcceEEEEeCccceeccCC
Q 037732          273 EYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDV-NYFVNELVKVGPSQLKHLYIRGSHLTLNPAE  347 (350)
Q Consensus       273 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~l~~~~~~~L~~L~l~~~~~~~~p~~  347 (350)
                      +..+..|+.|+++.|....+.++.+..+.+|++|+|++|.+... ++-...+  .++++|++|++.||++..+|.+
T Consensus       337 f~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f--~gl~~LrkL~l~gNqlk~I~kr  410 (873)
T KOG4194|consen  337 FRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAF--NGLPSLRKLRLTGNQLKSIPKR  410 (873)
T ss_pred             HHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhh--ccchhhhheeecCceeeecchh
Confidence            56677788888888888887777676678889999988887643 1112233  6699999999999999888863

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.85  E-value=5.1e-23  Score=176.23  Aligned_cols=272  Identities=17%  Similarity=0.242  Sum_probs=186.8

Q ss_pred             eeecccccccccccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCCC
Q 037732           67 FSATEEQTNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKL  146 (350)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l  146 (350)
                      .+...+.+..+|++++|+.|..+.+   +.+.+..+|+...+.+.++.+||+..|.++++|..++.+.+|.+||+++|.+
T Consensus       211 LyL~~Nki~~lPef~gcs~L~Elh~---g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~i  287 (565)
T KOG0472|consen  211 LYLRRNKIRFLPEFPGCSLLKELHV---GENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDI  287 (565)
T ss_pred             HHhhhcccccCCCCCccHHHHHHHh---cccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCcc
Confidence            4456668888888888888888888   6666777888777788888888888888888888888888888888888888


Q ss_pred             CC-chhhhccCCCcEEEecCCCCccccccccCCC------------------------------------------CccE
Q 037732          147 LD-ITVIRDLKKLAVLCLRGSDIKRLPVEVGELT------------------------------------------LLRL  183 (350)
Q Consensus       147 ~~-~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~------------------------------------------~L~~  183 (350)
                      +. |.+++++ +|++|.+.||.++.+-.++-++.                                          +.+.
T Consensus       288 s~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tki  366 (565)
T KOG0472|consen  288 SSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKI  366 (565)
T ss_pred             ccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhh
Confidence            88 7888888 88888888887654433322221                                          1222


Q ss_pred             EeccCCCCCCccCcchhCCCC--CCcEEEcCCCCCCcchh----------------hhccccccchhhcCCCceeEEEec
Q 037732          184 LDLRDCMELEVIPPNILSNLS--HLEELYMGPRSFDKWEV----------------EVEGVKNASLHELKHLISLELQIQ  245 (350)
Q Consensus       184 L~l~~~~~~~~~~~~~l~~l~--~L~~L~l~~~~~~~~~~----------------~~~~~~~~~l~~l~~L~~L~l~~~  245 (350)
                      |+++. ..++.+|.+++..-.  -....++++|++.+.+.                ...+.+|..+..+++|..|++++|
T Consensus       367 L~~s~-~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN  445 (565)
T KOG0472|consen  367 LDVSD-KQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNN  445 (565)
T ss_pred             hcccc-cccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccc
Confidence            22222 222223322211111  12233333333332221                111144566777888899999999


Q ss_pred             CCCCCCccc-ccCCccEEEEEEcC---cccccccCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccchhhhhh
Q 037732          246 DVNTFPRGL-FLEKLETFKILIGG---VWGWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVN  321 (350)
Q Consensus       246 ~~~~l~~~~-~~~~L~~L~l~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~  321 (350)
                      .+.++|..+ .+..|+.++++.+.   .+.+.-....++.+-.+.+....++..-...+.+|..|+|.+|.+..   +|+
T Consensus       446 ~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~---IPp  522 (565)
T KOG0472|consen  446 LLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQ---IPP  522 (565)
T ss_pred             hhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhh---CCh
Confidence            888998887 66778888887664   23333344556666666677777766533457999999999999988   899


Q ss_pred             hhcccCcCcceEEEEeCccceeccCCC
Q 037732          322 ELVKVGPSQLKHLYIRGSHLTLNPAES  348 (350)
Q Consensus       322 ~l~~~~~~~L~~L~l~~~~~~~~p~~~  348 (350)
                      .+  +++.+|++|+++||||...|..|
T Consensus       523 ~L--gnmtnL~hLeL~gNpfr~Pr~~i  547 (565)
T KOG0472|consen  523 IL--GNMTNLRHLELDGNPFRQPRHQI  547 (565)
T ss_pred             hh--ccccceeEEEecCCccCCCHHHH
Confidence            99  89999999999999999544444

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.85  E-value=2.5e-23  Score=187.42  Aligned_cols=267  Identities=18%  Similarity=0.220  Sum_probs=201.8

Q ss_pred             ccccccccc-ccCCCCCccEEEecccCCcc-ccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCC
Q 037732           70 TEEQTNLLL-EVVECPQLELLFICADKESS-SLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLL  147 (350)
Q Consensus        70 ~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~  147 (350)
                      ..+++..+- ++..++.||.+.+  ..++. ..-+|..+| .+..|+.|+|++|.+...|..+...+++-+|++++|++.
T Consensus        63 ~HN~L~~vhGELs~Lp~LRsv~~--R~N~LKnsGiP~diF-~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~Ie  139 (1255)
T KOG0444|consen   63 AHNQLISVHGELSDLPRLRSVIV--RDNNLKNSGIPTDIF-RLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIE  139 (1255)
T ss_pred             hhhhhHhhhhhhccchhhHHHhh--hccccccCCCCchhc-ccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccc
Confidence            344444333 5667788888888  34433 234788877 799999999999999999999989999999999999988


Q ss_pred             C-c-hhhhccCCCcEEEecCCCCccccccccCCCCccEEeccCCCCCCccC-cchhCCCCCCcEEEcCCCCCCcchhhhc
Q 037732          148 D-I-TVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIP-PNILSNLSHLEELYMGPRSFDKWEVEVE  224 (350)
Q Consensus       148 ~-~-~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~  224 (350)
                      . | +-+-++..|-+||+++|++..+|+.+..+.+|++|.+++|. +..+. .. +..+++|+.|.+++.+.+      .
T Consensus       140 tIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NP-L~hfQLrQ-LPsmtsL~vLhms~TqRT------l  211 (1255)
T KOG0444|consen  140 TIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNP-LNHFQLRQ-LPSMTSLSVLHMSNTQRT------L  211 (1255)
T ss_pred             cCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCCh-hhHHHHhc-Cccchhhhhhhcccccch------h
Confidence            8 5 45668888999999999999999999999999999998844 33222 22 566778888888876653      4


Q ss_pred             cccccchhhcCCCceeEEEecCCCCCCccc-ccCCccEEEEEEcCccc---ccccCccceEEEEeCCCcccchHHHHHHh
Q 037732          225 GVKNASLHELKHLISLELQIQDVNTFPRGL-FLEKLETFKILIGGVWG---WEYADIWCREFKIDLDSKIRLKDGLILKL  300 (350)
Q Consensus       225 ~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  300 (350)
                      ..+|.++..+.+|..++++.|.+..+|.-+ .+++|+.|+++.+.+-.   ....-.+|++|++++|....+|.++.+. 
T Consensus       212 ~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL-  290 (1255)
T KOG0444|consen  212 DNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKL-  290 (1255)
T ss_pred             hcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhh-
Confidence            578888999999999999999998888887 78899999997766533   2344567888888888888888888774 


Q ss_pred             cccceeeeccccccchhhhhhhhcc---------------------cCcCcceEEEEeCccceeccCCCC
Q 037732          301 EGIEDLWLSYLEEQDVNYFVNELVK---------------------VGPSQLKHLYIRGSHLTLNPAESN  349 (350)
Q Consensus       301 ~~L~~L~L~~n~l~~~~~~~~~l~~---------------------~~~~~L~~L~l~~~~~~~~p~~~~  349 (350)
                      ++|+.|.+.+|.++= +++|..++.                     ..|+.|+.|.|+.|++.++|+.|-
T Consensus       291 ~kL~kLy~n~NkL~F-eGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIH  359 (1255)
T KOG0444|consen  291 TKLTKLYANNNKLTF-EGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLPEAIH  359 (1255)
T ss_pred             HHHHHHHhccCcccc-cCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccceeechhhhh
Confidence            788888887776531 124443310                     457888888888888888888763

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.78  E-value=5.4e-22  Score=170.03  Aligned_cols=244  Identities=20%  Similarity=0.222  Sum_probs=196.2

Q ss_pred             ccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCC-chhhhccCC
Q 037732           79 EVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLD-ITVIRDLKK  157 (350)
Q Consensus        79 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~-~~~l~~l~~  157 (350)
                      .+.++..+.++.+   ..+...+.|..+ ..+..+..++++.|.+..+|+.++.+..|+.|+.+.|.+.. +++++.+-.
T Consensus        63 dl~nL~~l~vl~~---~~n~l~~lp~ai-g~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~  138 (565)
T KOG0472|consen   63 DLKNLACLTVLNV---HDNKLSQLPAAI-GELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLD  138 (565)
T ss_pred             hhhcccceeEEEe---ccchhhhCCHHH-HHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhh
Confidence            4456667777777   344456677765 36788888888988888888888888889999998888877 888888888


Q ss_pred             CcEEEecCCCCccccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCC
Q 037732          158 LAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHL  237 (350)
Q Consensus       158 L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L  237 (350)
                      |+.++..+|++..+|+++..+.++..+++.+ +.+..+|+..+ +|+.|++|+...|-.        +.+|+.++.|.+|
T Consensus       139 l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~-n~l~~l~~~~i-~m~~L~~ld~~~N~L--------~tlP~~lg~l~~L  208 (565)
T KOG0472|consen  139 LEDLDATNNQISSLPEDMVNLSKLSKLDLEG-NKLKALPENHI-AMKRLKHLDCNSNLL--------ETLPPELGGLESL  208 (565)
T ss_pred             hhhhhccccccccCchHHHHHHHHHHhhccc-cchhhCCHHHH-HHHHHHhcccchhhh--------hcCChhhcchhhh
Confidence            9988888888989998888888888888888 66677777644 488899988765544        5778889999999


Q ss_pred             ceeEEEecCCCCCCccc-ccCCccEEEEEEcCcc---c-ccccCccceEEEEeCCCcccchHHHHHHhcccceeeecccc
Q 037732          238 ISLELQIQDVNTFPRGL-FLEKLETFKILIGGVW---G-WEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLE  312 (350)
Q Consensus       238 ~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~---~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~  312 (350)
                      +-|++..|++..+| ++ .+..|+++....+.+.   + ....++++..|++..|...+.|+.+.. +.+|+.||+++|.
T Consensus       209 ~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~cl-LrsL~rLDlSNN~  286 (565)
T KOG0472|consen  209 ELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICL-LRSLERLDLSNND  286 (565)
T ss_pred             HHHHhhhcccccCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHH-hhhhhhhcccCCc
Confidence            99999999999888 55 7888888877655432   2 355788899999999999999988775 4889999999999


Q ss_pred             ccchhhhhhhhcccCcCcceEEEEeCccceec
Q 037732          313 EQDVNYFVNELVKVGPSQLKHLYIRGSHLTLN  344 (350)
Q Consensus       313 l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~  344 (350)
                      ++.   +|.++  +++ .|+.|-+.|||+.++
T Consensus       287 is~---Lp~sL--gnl-hL~~L~leGNPlrTi  312 (565)
T KOG0472|consen  287 ISS---LPYSL--GNL-HLKFLALEGNPLRTI  312 (565)
T ss_pred             ccc---CCccc--ccc-eeeehhhcCCchHHH
Confidence            988   78788  677 899999999988664

>PLN03210 Resistant to P

Probab=99.77  E-value=6.2e-18  Score=172.97  Aligned_cols=243  Identities=20%  Similarity=0.225  Sum_probs=135.4

Q ss_pred             CccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCC-CCCchhhhccCCCcEEEe
Q 037732           85 QLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCK-LLDITVIRDLKKLAVLCL  163 (350)
Q Consensus        85 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~-l~~~~~l~~l~~L~~L~l  163 (350)
                      +||.|.+   .+.....+|..+  ...+|+.|+++++.+..+|..+..+++|++|+++++. +..++.++.+++|+.|++
T Consensus       590 ~Lr~L~~---~~~~l~~lP~~f--~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L  664 (1153)
T PLN03210        590 KLRLLRW---DKYPLRCMPSNF--RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKL  664 (1153)
T ss_pred             ccEEEEe---cCCCCCCCCCcC--CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEe
Confidence            5666666   334455566543  4566677777766666666666666677777776654 333445666666666666


Q ss_pred             cCC-CCccccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCC---------------------CCcchh
Q 037732          164 RGS-DIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRS---------------------FDKWEV  221 (350)
Q Consensus       164 ~~~-~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~---------------------~~~~~~  221 (350)
                      .+| .+..+|..++.+++|+.|++++|..+..+|.. + ++++|+.|++++|.                     +..++.
T Consensus       665 ~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~  742 (1153)
T PLN03210        665 SDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPS  742 (1153)
T ss_pred             cCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccc
Confidence            665 45566666666666666666666666666654 1 45555555555442                     211110


Q ss_pred             h----------------------------------------------hccccccchhhcCCCceeEEEec-CCCCCCccc
Q 037732          222 E----------------------------------------------VEGVKNASLHELKHLISLELQIQ-DVNTFPRGL  254 (350)
Q Consensus       222 ~----------------------------------------------~~~~~~~~l~~l~~L~~L~l~~~-~~~~l~~~~  254 (350)
                      .                                              ....+|.+++++++|+.|++++| .+..+|...
T Consensus       743 ~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~  822 (1153)
T PLN03210        743 NLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI  822 (1153)
T ss_pred             cccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC
Confidence            0                                              01123444445555555555544 244444444


Q ss_pred             ccCCccEEEEEEcCcccc-cccCccceEEEEeCCCcccchHHHHHHhcccceeeecc-ccccchhhhhhhhcccCcCcce
Q 037732          255 FLEKLETFKILIGGVWGW-EYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSY-LEEQDVNYFVNELVKVGPSQLK  332 (350)
Q Consensus       255 ~~~~L~~L~l~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~~~l~~~~~~~L~  332 (350)
                      .+++|+.|++..+..... .....+|+.|+++++....+|.++.. +++|+.|++++ +.+..   ++..+  ..+++|+
T Consensus       823 ~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~-l~~L~~L~L~~C~~L~~---l~~~~--~~L~~L~  896 (1153)
T PLN03210        823 NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEK-FSNLSFLDMNGCNNLQR---VSLNI--SKLKHLE  896 (1153)
T ss_pred             CccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhc-CCCCCEEECCCCCCcCc---cCccc--ccccCCC
Confidence            445555555544432221 12234566677766666667766554 47777777774 23333   55444  5567777


Q ss_pred             EEEEeCcc
Q 037732          333 HLYIRGSH  340 (350)
Q Consensus       333 ~L~l~~~~  340 (350)
                      .+++.+|+
T Consensus       897 ~L~l~~C~  904 (1153)
T PLN03210        897 TVDFSDCG  904 (1153)
T ss_pred             eeecCCCc
Confidence            77777774

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.72  E-value=2.2e-16  Score=151.62  Aligned_cols=199  Identities=16%  Similarity=0.106  Sum_probs=122.3

Q ss_pred             cceEEeecCCcCcCCCccccCcccccEEEecCCCCCCchhhhccCCCcEEEecCCCCccccccccCCCCccEEeccCCCC
Q 037732          112 QVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCME  191 (350)
Q Consensus       112 ~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~  191 (350)
                      +|+.|++++|.+..+|..+   ..|+.|++++|.++..+.  ..++|+.|++++|++..+|...   .+|+.|.+++ +.
T Consensus       263 sL~~L~Ls~N~L~~Lp~lp---~~L~~L~Ls~N~Lt~LP~--~p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~-N~  333 (788)
T PRK15387        263 GLLELSIFSNPLTHLPALP---SGLCKLWIFGNQLTSLPV--LPPGLQELSVSDNQLASLPALP---SELCKLWAYN-NQ  333 (788)
T ss_pred             ccceeeccCCchhhhhhch---hhcCEEECcCCccccccc--cccccceeECCCCccccCCCCc---cccccccccc-Cc
Confidence            4444444444444433311   234455555555544211  1245666666666555555322   2344555555 33


Q ss_pred             CCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCCCCCCcccccCCccEEEEEEcCccc
Q 037732          192 LEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRGLFLEKLETFKILIGGVWG  271 (350)
Q Consensus       192 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~  271 (350)
                      +..+|..    ..+|+.|++++|.+...        |..   ..+|+.|++++|.+..+|..  ..+|+.|++..+.+..
T Consensus       334 L~~LP~l----p~~Lq~LdLS~N~Ls~L--------P~l---p~~L~~L~Ls~N~L~~LP~l--~~~L~~LdLs~N~Lt~  396 (788)
T PRK15387        334 LTSLPTL----PSGLQELSVSDNQLASL--------PTL---PSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLTS  396 (788)
T ss_pred             ccccccc----ccccceEecCCCccCCC--------CCC---CcccceehhhccccccCccc--ccccceEEecCCcccC
Confidence            3344431    14677788877776432        221   23567777778877777765  4678888887666544


Q ss_pred             ccccCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEeCccceecc
Q 037732          272 WEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLTLNP  345 (350)
Q Consensus       272 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~p  345 (350)
                      .-...++|+.|++++|....+|..    +.+|+.|++++|+++.   +|..+  ..+++|+.|+|++|++++..
T Consensus       397 LP~l~s~L~~LdLS~N~LssIP~l----~~~L~~L~Ls~NqLt~---LP~sl--~~L~~L~~LdLs~N~Ls~~~  461 (788)
T PRK15387        397 LPVLPSELKELMVSGNRLTSLPML----PSGLLSLSVYRNQLTR---LPESL--IHLSSETTVNLEGNPLSERT  461 (788)
T ss_pred             CCCcccCCCEEEccCCcCCCCCcc----hhhhhhhhhccCcccc---cChHH--hhccCCCeEECCCCCCCchH
Confidence            333456789999999888887742    3578889999999987   78777  67899999999999988643

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.72  E-value=2.2e-16  Score=152.40  Aligned_cols=244  Identities=15%  Similarity=0.166  Sum_probs=182.3

Q ss_pred             eeeecccccccccccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCC
Q 037732           66 VFSATEEQTNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCK  145 (350)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~  145 (350)
                      .+.++...+..+|... .++++.|++  + ++....+|..++   .+|+.|++++|.++.+|..+.  .+|+.|++++|.
T Consensus       182 ~L~L~~~~LtsLP~~I-p~~L~~L~L--s-~N~LtsLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~  252 (754)
T PRK15370        182 ELRLKILGLTTIPACI-PEQITTLIL--D-NNELKSLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELSINR  252 (754)
T ss_pred             EEEeCCCCcCcCCccc-ccCCcEEEe--c-CCCCCcCChhhc---cCCCEEECCCCccccCChhhh--ccccEEECcCCc
Confidence            3455566677777421 257899999  4 445667887653   589999999999988887654  479999999999


Q ss_pred             CCC-chhhhccCCCcEEEecCCCCccccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhc
Q 037732          146 LLD-ITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVE  224 (350)
Q Consensus       146 l~~-~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~  224 (350)
                      +.. |..+.  .+|+.|++++|++..+|..+.  ++|+.|++++| .+..+|.. +  .++|+.|++++|.+...     
T Consensus       253 L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~-l--p~sL~~L~Ls~N~Lt~L-----  319 (754)
T PRK15370        253 ITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDN-SIRTLPAH-L--PSGITHLNVQSNSLTAL-----  319 (754)
T ss_pred             cCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCC-ccccCccc-c--hhhHHHHHhcCCccccC-----
Confidence            888 55554  589999999999998887654  58999999984 56667764 2  24788999998887433     


Q ss_pred             cccccchhhcCCCceeEEEecCCCCCCcccccCCccEEEEEEcCccccc-ccCccceEEEEeCCCcccchHHHHHHhccc
Q 037732          225 GVKNASLHELKHLISLELQIQDVNTFPRGLFLEKLETFKILIGGVWGWE-YADIWCREFKIDLDSKIRLKDGLILKLEGI  303 (350)
Q Consensus       225 ~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L  303 (350)
                         |..+  .++|+.|+++.|.+..+|..+ .++|+.|++..+.+...- .-.++|+.|++++|....+|..+.   ++|
T Consensus       320 ---P~~l--~~sL~~L~Ls~N~Lt~LP~~l-~~sL~~L~Ls~N~L~~LP~~lp~~L~~LdLs~N~Lt~LP~~l~---~sL  390 (754)
T PRK15370        320 ---PETL--PPGLKTLEAGENALTSLPASL-PPELQVLDVSKNQITVLPETLPPTITTLDVSRNALTNLPENLP---AAL  390 (754)
T ss_pred             ---Cccc--cccceeccccCCccccCChhh-cCcccEEECCCCCCCcCChhhcCCcCEEECCCCcCCCCCHhHH---HHH
Confidence               2222  257999999999998888765 478999999877654221 124689999999999888887654   479


Q ss_pred             ceeeeccccccchhh-hhhhhcccCcCcceEEEEeCccce
Q 037732          304 EDLWLSYLEEQDVNY-FVNELVKVGPSQLKHLYIRGSHLT  342 (350)
Q Consensus       304 ~~L~L~~n~l~~~~~-~~~~l~~~~~~~L~~L~l~~~~~~  342 (350)
                      +.|++++|+++.++. ++...  ..++++..|++.+|+++
T Consensus       391 ~~LdLs~N~L~~LP~sl~~~~--~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        391 QIMQASRNNLVRLPESLPHFR--GEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             HHHhhccCCcccCchhHHHHh--hcCCCccEEEeeCCCcc
Confidence            999999999987432 23333  45689999999999985

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.67  E-value=2e-16  Score=152.69  Aligned_cols=226  Identities=20%  Similarity=0.209  Sum_probs=172.0

Q ss_pred             CccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCC-chhhhccCCCcEEEe
Q 037732           85 QLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLD-ITVIRDLKKLAVLCL  163 (350)
Q Consensus        85 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~l  163 (350)
                      +...|.+   .+.....+|..+   .++++.|++++|.++.+|..+.  .+|++|++++|.++. |..+.  .+|+.|++
T Consensus       179 ~~~~L~L---~~~~LtsLP~~I---p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~L  248 (754)
T PRK15370        179 NKTELRL---KILGLTTIPACI---PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMEL  248 (754)
T ss_pred             CceEEEe---CCCCcCcCCccc---ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEEC
Confidence            4567888   334456677654   3579999999999999888664  589999999999888 55443  47999999


Q ss_pred             cCCCCccccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEE
Q 037732          164 RGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQ  243 (350)
Q Consensus       164 ~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~  243 (350)
                      ++|.+..+|..+.  .+|+.|++++ +.+..+|.. +.  .+|+.|++++|.+..+        |..+.  ++|+.|+++
T Consensus       249 s~N~L~~LP~~l~--s~L~~L~Ls~-N~L~~LP~~-l~--~sL~~L~Ls~N~Lt~L--------P~~lp--~sL~~L~Ls  312 (754)
T PRK15370        249 SINRITELPERLP--SALQSLDLFH-NKISCLPEN-LP--EELRYLSVYDNSIRTL--------PAHLP--SGITHLNVQ  312 (754)
T ss_pred             cCCccCcCChhHh--CCCCEEECcC-CccCccccc-cC--CCCcEEECCCCccccC--------cccch--hhHHHHHhc
Confidence            9999999987664  5899999987 566678875 32  5899999999987533        32222  468899999


Q ss_pred             ecCCCCCCcccccCCccEEEEEEcCcccccc-cCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccchhhhhhh
Q 037732          244 IQDVNTFPRGLFLEKLETFKILIGGVWGWEY-ADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNE  322 (350)
Q Consensus       244 ~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~  322 (350)
                      +|.+..+|..+ .++|+.|.+..+.+..+-. -+++|+.|++++|....+|..+   .++|+.|+|++|.++.   +|..
T Consensus       313 ~N~Lt~LP~~l-~~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~L~~LP~~l---p~~L~~LdLs~N~Lt~---LP~~  385 (754)
T PRK15370        313 SNSLTALPETL-PPGLKTLEAGENALTSLPASLPPELQVLDVSKNQITVLPETL---PPTITTLDVSRNALTN---LPEN  385 (754)
T ss_pred             CCccccCCccc-cccceeccccCCccccCChhhcCcccEEECCCCCCCcCChhh---cCCcCEEECCCCcCCC---CCHh
Confidence            99998888765 4688888887665433211 2368999999999888888654   3789999999999987   6665


Q ss_pred             hcccCcCcceEEEEeCccceeccCC
Q 037732          323 LVKVGPSQLKHLYIRGSHLTLNPAE  347 (350)
Q Consensus       323 l~~~~~~~L~~L~l~~~~~~~~p~~  347 (350)
                      +    .+.|+.|++++|.++.+|..
T Consensus       386 l----~~sL~~LdLs~N~L~~LP~s  406 (754)
T PRK15370        386 L----PAALQIMQASRNNLVRLPES  406 (754)
T ss_pred             H----HHHHHHHhhccCCcccCchh
Confidence            5    24799999999999988863

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.65  E-value=3.3e-18  Score=130.75  Aligned_cols=179  Identities=18%  Similarity=0.189  Sum_probs=104.8

Q ss_pred             cCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCC-chhhhccCCCcEEEecCCCCccccccccCCCCccEEecc
Q 037732          109 RMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLD-ITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLR  187 (350)
Q Consensus       109 ~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~  187 (350)
                      ++.+++.|.+++|.++.+|+.+..+.+|+.|++++|++.+ |.+++.+++|+.|++.-|++..+|.++            
T Consensus        31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgf------------   98 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGF------------   98 (264)
T ss_pred             chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCcccc------------
Confidence            3455555555555555555555555555555555555544 444555555555554444444444444            


Q ss_pred             CCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCCCCCCcccccCCccEEEEEEc
Q 037732          188 DCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRGLFLEKLETFKILIG  267 (350)
Q Consensus       188 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~  267 (350)
                                   +.++.|+.|++..|...      ...+|..|-.|.-|+-|+++.|++.-+|..+             
T Consensus        99 -------------gs~p~levldltynnl~------e~~lpgnff~m~tlralyl~dndfe~lp~dv-------------  146 (264)
T KOG0617|consen   99 -------------GSFPALEVLDLTYNNLN------ENSLPGNFFYMTTLRALYLGDNDFEILPPDV-------------  146 (264)
T ss_pred             -------------CCCchhhhhhccccccc------cccCCcchhHHHHHHHHHhcCCCcccCChhh-------------
Confidence                         45555555555544442      3355566666777777788888777777764             


Q ss_pred             CcccccccCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccchhhhhhhhcccCc---CcceEEEEeCcccee
Q 037732          268 GVWGWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGP---SQLKHLYIRGSHLTL  343 (350)
Q Consensus       268 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~---~~L~~L~l~~~~~~~  343 (350)
                            +.+++|+.|.+..|+..++|..++. +..|++|++.+|+++-   +|+.+  +++   -+=+.+++..|||..
T Consensus       147 ------g~lt~lqil~lrdndll~lpkeig~-lt~lrelhiqgnrl~v---lppel--~~l~l~~~k~v~r~E~NPwv~  213 (264)
T KOG0617|consen  147 ------GKLTNLQILSLRDNDLLSLPKEIGD-LTRLRELHIQGNRLTV---LPPEL--ANLDLVGNKQVMRMEENPWVN  213 (264)
T ss_pred             ------hhhcceeEEeeccCchhhCcHHHHH-HHHHHHHhcccceeee---cChhh--hhhhhhhhHHHHhhhhCCCCC
Confidence                  2445566666666777777777776 4899999999999887   56555  222   222445555566543

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.65  E-value=5.7e-18  Score=159.11  Aligned_cols=218  Identities=24%  Similarity=0.297  Sum_probs=143.4

Q ss_pred             CcceEEeecCCcCcCCCccccCcccccEEEecCCCCCC-chhhhccCCCcEEEecCCCCccccccccCCCCccEEeccCC
Q 037732          111 IQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLD-ITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDC  189 (350)
Q Consensus       111 ~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~  189 (350)
                      .+++.++++.+.+..+|..++.+.+|+.++..+|.+.. |..+...++|++|.+..|.+..+|......+.|++|++.. 
T Consensus       241 ~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~-  319 (1081)
T KOG0618|consen  241 LNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQS-  319 (1081)
T ss_pred             ccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehh-
Confidence            34555555555555555545555555555555555544 4445555555555555555555554444455555555544 


Q ss_pred             CCCCccCcchh-------------------------CCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEe
Q 037732          190 MELEVIPPNIL-------------------------SNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQI  244 (350)
Q Consensus       190 ~~~~~~~~~~l-------------------------~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~  244 (350)
                      +.+..+|..++                         ..++.|+.|++.+|.+       .+..-..+.++++|+.|+++.
T Consensus       320 N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~L-------td~c~p~l~~~~hLKVLhLsy  392 (1081)
T KOG0618|consen  320 NNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHL-------TDSCFPVLVNFKHLKVLHLSY  392 (1081)
T ss_pred             ccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcc-------cccchhhhccccceeeeeecc
Confidence            33333333221                         2234566666776666       344445688999999999999


Q ss_pred             cCCCCCCccc--ccCCccEEEEEEcC---cccccccCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccchhhh
Q 037732          245 QDVNTFPRGL--FLEKLETFKILIGG---VWGWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYF  319 (350)
Q Consensus       245 ~~~~~l~~~~--~~~~L~~L~l~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~  319 (350)
                      |.+..+|+..  .+..|++|.++.+.   ++..+..++.|++|...+|.+..+| .+.. ++.|+.+|++.|+++.. .+
T Consensus       393 NrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~-l~qL~~lDlS~N~L~~~-~l  469 (1081)
T KOG0618|consen  393 NRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQ-LPQLKVLDLSCNNLSEV-TL  469 (1081)
T ss_pred             cccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hhhh-cCcceEEecccchhhhh-hh
Confidence            9999999887  67888888887765   4456778999999999999999999 4444 69999999999999875 23


Q ss_pred             hhhhcccCcCcceEEEEeCccce
Q 037732          320 VNELVKVGPSQLKHLYIRGSHLT  342 (350)
Q Consensus       320 ~~~l~~~~~~~L~~L~l~~~~~~  342 (350)
                      +...   ..|+|++||++||...
T Consensus       470 ~~~~---p~p~LkyLdlSGN~~l  489 (1081)
T KOG0618|consen  470 PEAL---PSPNLKYLDLSGNTRL  489 (1081)
T ss_pred             hhhC---CCcccceeeccCCccc
Confidence            4333   3389999999999853

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.63  E-value=1.9e-15  Score=145.24  Aligned_cols=237  Identities=19%  Similarity=0.174  Sum_probs=157.5

Q ss_pred             ceeeecccccccccccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCC
Q 037732           65 NVFSATEEQTNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNC  144 (350)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~  144 (350)
                      ..+.++...+..+|... .++++.|.+  . .+....+|.    ..++|++|++++|.++.+|..   .++|+.|++++|
T Consensus       204 ~~LdLs~~~LtsLP~~l-~~~L~~L~L--~-~N~Lt~LP~----lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N  272 (788)
T PRK15387        204 AVLNVGESGLTTLPDCL-PAHITTLVI--P-DNNLTSLPA----LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSN  272 (788)
T ss_pred             cEEEcCCCCCCcCCcch-hcCCCEEEc--c-CCcCCCCCC----CCCCCcEEEecCCccCcccCc---ccccceeeccCC
Confidence            34445555666666422 236777777  3 333445553    246777777777777766642   356777777777


Q ss_pred             CCCCchhhhccCCCcEEEecCCCCccccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhc
Q 037732          145 KLLDITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVE  224 (350)
Q Consensus       145 ~l~~~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~  224 (350)
                      .+..++.  ...+|+.|++++|++..+|..   .++|+.|++++| .+..+|..    ..+|+.|++++|.+..      
T Consensus       273 ~L~~Lp~--lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N-~L~~Lp~l----p~~L~~L~Ls~N~L~~------  336 (788)
T PRK15387        273 PLTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPAL----PSELCKLWAYNNQLTS------  336 (788)
T ss_pred             chhhhhh--chhhcCEEECcCCcccccccc---ccccceeECCCC-ccccCCCC----cccccccccccCcccc------
Confidence            7666222  124577777777777777652   366788888774 44455541    2346677777776632      


Q ss_pred             cccccchhhcCCCceeEEEecCCCCCCcccccCCccEEEEEEcCcccccccCccceEEEEeCCCcccchHHHHHHhcccc
Q 037732          225 GVKNASLHELKHLISLELQIQDVNTFPRGLFLEKLETFKILIGGVWGWEYADIWCREFKIDLDSKIRLKDGLILKLEGIE  304 (350)
Q Consensus       225 ~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  304 (350)
                        +|..   ..+|+.|++++|.+..+|..  ..+|+.|++..+.+..+-..+.+|+.|++++|....+|..    .++|+
T Consensus       337 --LP~l---p~~Lq~LdLS~N~Ls~LP~l--p~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~LP~l----~s~L~  405 (788)
T PRK15387        337 --LPTL---PSGLQELSVSDNQLASLPTL--PSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVL----PSELK  405 (788)
T ss_pred             --cccc---ccccceEecCCCccCCCCCC--CcccceehhhccccccCcccccccceEEecCCcccCCCCc----ccCCC
Confidence              2221   14789999999999888875  5678888876665544333446799999999888877742    46899


Q ss_pred             eeeeccccccchhhhhhhhcccCcCcceEEEEeCccceeccCC
Q 037732          305 DLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLTLNPAE  347 (350)
Q Consensus       305 ~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~p~~  347 (350)
                      .|++++|.++.   +|..     ..+|+.|++++|.++.+|..
T Consensus       406 ~LdLS~N~Lss---IP~l-----~~~L~~L~Ls~NqLt~LP~s  440 (788)
T PRK15387        406 ELMVSGNRLTS---LPML-----PSGLLSLSVYRNQLTRLPES  440 (788)
T ss_pred             EEEccCCcCCC---CCcc-----hhhhhhhhhccCcccccChH
Confidence            99999999987   5532     25788999999999999874

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.62  E-value=8.9e-18  Score=128.42  Aligned_cols=168  Identities=22%  Similarity=0.306  Sum_probs=146.3

Q ss_pred             ccccccccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCC-chh
Q 037732           73 QTNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLD-ITV  151 (350)
Q Consensus        73 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~-~~~  151 (350)
                      .+..++.+..+++...|.+  + .+....+|..+. .+.+|++|++++|+++.+|.+++.+++|+.|+++-|++.. |..
T Consensus        22 sf~~~~gLf~~s~ITrLtL--S-HNKl~~vppnia-~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprg   97 (264)
T KOG0617|consen   22 SFEELPGLFNMSNITRLTL--S-HNKLTVVPPNIA-ELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRG   97 (264)
T ss_pred             cHhhcccccchhhhhhhhc--c-cCceeecCCcHH-HhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccc
Confidence            4455666778888888988  4 444566777654 8999999999999999999999999999999999999888 899


Q ss_pred             hhccCCCcEEEecCCCCc--cccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhcccccc
Q 037732          152 IRDLKKLAVLCLRGSDIK--RLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNA  229 (350)
Q Consensus       152 l~~l~~L~~L~l~~~~~~--~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  229 (350)
                      ++.++-|+.||+++|++.  .+|..+.-++.|+.|.++. +..+.+|+. ++++++|+.|.+..|...        .+|.
T Consensus        98 fgs~p~levldltynnl~e~~lpgnff~m~tlralyl~d-ndfe~lp~d-vg~lt~lqil~lrdndll--------~lpk  167 (264)
T KOG0617|consen   98 FGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGD-NDFEILPPD-VGKLTNLQILSLRDNDLL--------SLPK  167 (264)
T ss_pred             cCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcC-CCcccCChh-hhhhcceeEEeeccCchh--------hCcH
Confidence            999999999999999887  7999999999999999998 667888988 799999999999988763        5677


Q ss_pred             chhhcCCCceeEEEecCCCCCCccc
Q 037732          230 SLHELKHLISLELQIQDVNTFPRGL  254 (350)
Q Consensus       230 ~l~~l~~L~~L~l~~~~~~~l~~~~  254 (350)
                      .++.+..|+.|++++|.+..+|+++
T Consensus       168 eig~lt~lrelhiqgnrl~vlppel  192 (264)
T KOG0617|consen  168 EIGDLTRLRELHIQGNRLTVLPPEL  192 (264)
T ss_pred             HHHHHHHHHHHhcccceeeecChhh
Confidence            8999999999999999999998884

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.60  E-value=1.1e-16  Score=137.42  Aligned_cols=267  Identities=17%  Similarity=0.164  Sum_probs=173.5

Q ss_pred             eecccccccccccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcC-CCccccCcccccEEEecC-CC
Q 037732           68 SATEEQTNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLS-LPSSLGLLSNLQNLSLYN-CK  145 (350)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~l~~l~~L~~L~l~~-~~  145 (350)
                      .-++.++.++|...- +....+.+   +.+.+..+|...|+.+++||.|+|+.|.|+. -|+.|..+..|..|-+.+ |+
T Consensus        52 dCr~~GL~eVP~~LP-~~tveirL---dqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~Nk  127 (498)
T KOG4237|consen   52 DCRGKGLTEVPANLP-PETVEIRL---DQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNK  127 (498)
T ss_pred             EccCCCcccCcccCC-CcceEEEe---ccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCc
Confidence            334556777774222 24455677   5566888998889999999999999999986 577899998888877777 78


Q ss_pred             CCC-c-hhhhccCCCcEEEecCCCCccccc-cccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcch--
Q 037732          146 LLD-I-TVIRDLKKLAVLCLRGSDIKRLPV-EVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWE--  220 (350)
Q Consensus       146 l~~-~-~~l~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--  220 (350)
                      +++ + ..+..+..|+.|.+.-|++..++. .+..++++..|.+.. +....++...+..+.+++++.+..|.+....  
T Consensus       128 I~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyD-n~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL  206 (498)
T KOG4237|consen  128 ITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYD-NKIQSICKGTFQGLAAIKTLHLAQNPFICDCNL  206 (498)
T ss_pred             hhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccc-hhhhhhccccccchhccchHhhhcCcccccccc
Confidence            888 4 677888888888888888875554 578888888888887 6666777655778888888887766632111  


Q ss_pred             ---hhhccccccchhhcCCC----------------------cee--EEEe-cC-CCCCCccc--ccCCccEEEEEEcCc
Q 037732          221 ---VEVEGVKNASLHELKHL----------------------ISL--ELQI-QD-VNTFPRGL--FLEKLETFKILIGGV  269 (350)
Q Consensus       221 ---~~~~~~~~~~l~~l~~L----------------------~~L--~l~~-~~-~~~l~~~~--~~~~L~~L~l~~~~~  269 (350)
                         .......+-.++.....                      +.+  .+.. +. ...-|..-  .+++|+.+++..+.+
T Consensus       207 ~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i  286 (498)
T KOG4237|consen  207 PWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKI  286 (498)
T ss_pred             chhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCcc
Confidence               00011111111111111                      111  0111 10 11111111  356666666655543


Q ss_pred             cc----ccccCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEeCcccee
Q 037732          270 WG----WEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLTL  343 (350)
Q Consensus       270 ~~----~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~  343 (350)
                      -.    ++.....++.|.+..|.+..+....+..+..|+.|+|.+|+++.+  -|..|  ....+|..|++-.|||.+
T Consensus       287 ~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~--~~~aF--~~~~~l~~l~l~~Np~~C  360 (498)
T KOG4237|consen  287 TRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTV--APGAF--QTLFSLSTLNLLSNPFNC  360 (498)
T ss_pred             chhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEE--ecccc--cccceeeeeehccCcccC
Confidence            22    567777788888888877777776666678888888888888774  45555  667788888888777654

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.58  E-value=2.6e-15  Score=133.69  Aligned_cols=249  Identities=17%  Similarity=0.150  Sum_probs=128.5

Q ss_pred             CCCccEEEecccCCcccc----ccChHHHhcCCcceEEeecCCcCcC-------CCccccCcccccEEEecCCCCCC--c
Q 037732           83 CPQLELLFICADKESSSL----TIPNKFFERMIQVRVINFSYMNLLS-------LPSSLGLLSNLQNLSLYNCKLLD--I  149 (350)
Q Consensus        83 ~~~L~~L~l~~~~~~~~~----~~~~~~~~~l~~L~~L~l~~~~~~~-------lp~~l~~l~~L~~L~l~~~~l~~--~  149 (350)
                      ++.++.+.+  ..+....    .++.. ....+.++.++++++.+..       ++..+..+++|++|++++|.+..  +
T Consensus        22 l~~L~~l~l--~~~~l~~~~~~~i~~~-l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~   98 (319)
T cd00116          22 LLCLQVLRL--EGNTLGEEAAKALASA-LRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC   98 (319)
T ss_pred             HhhccEEee--cCCCCcHHHHHHHHHH-HhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHH
Confidence            345777777  3333211    12222 2345667777777765542       23445566677777777777653  3


Q ss_pred             hhhhccCC---CcEEEecCCCCc-----cccccccCC-CCccEEeccCCCCCC----ccCcchhCCCCCCcEEEcCCCCC
Q 037732          150 TVIRDLKK---LAVLCLRGSDIK-----RLPVEVGEL-TLLRLLDLRDCMELE----VIPPNILSNLSHLEELYMGPRSF  216 (350)
Q Consensus       150 ~~l~~l~~---L~~L~l~~~~~~-----~lp~~l~~l-~~L~~L~l~~~~~~~----~~~~~~l~~l~~L~~L~l~~~~~  216 (350)
                      ..+..+.+   |+.|++++|.+.     .+...+..+ ++|+.|++++|....    .++.. +..+++|++|++++|.+
T Consensus        99 ~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~-~~~~~~L~~L~l~~n~l  177 (319)
T cd00116          99 GVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA-LRANRDLKELNLANNGI  177 (319)
T ss_pred             HHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH-HHhCCCcCEEECcCCCC
Confidence            44444444   777777777665     223344555 677777777755332    12222 45566777777777665


Q ss_pred             CcchhhhccccccchhhcCCCceeEEEecCCCCC-----Cccc-ccCCccEEEEEEcCccc-----ccc----cCccceE
Q 037732          217 DKWEVEVEGVKNASLHELKHLISLELQIQDVNTF-----PRGL-FLEKLETFKILIGGVWG-----WEY----ADIWCRE  281 (350)
Q Consensus       217 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l-----~~~~-~~~~L~~L~l~~~~~~~-----~~~----~~~~L~~  281 (350)
                      ....   ...++..+..+++|+.|++++|.+...     +..+ .+++|++|++..+.+.+     ...    ..+.|++
T Consensus       178 ~~~~---~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~  254 (319)
T cd00116         178 GDAG---IRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLT  254 (319)
T ss_pred             chHH---HHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceE
Confidence            3211   112333445556777777777765421     2222 24556666665544322     011    1245666


Q ss_pred             EEEeCCCcc-----cchHHHHHHhcccceeeeccccccch--hhhhhhhcccCc-CcceEEEEeCccc
Q 037732          282 FKIDLDSKI-----RLKDGLILKLEGIEDLWLSYLEEQDV--NYFVNELVKVGP-SQLKHLYIRGSHL  341 (350)
Q Consensus       282 L~l~~~~~~-----~~~~~~~~~~~~L~~L~L~~n~l~~~--~~~~~~l~~~~~-~~L~~L~l~~~~~  341 (350)
                      |+++++...     .+...+.. +++|+.+++++|.+.+.  +.+...+  ..+ +.|+.|++.++++
T Consensus       255 L~l~~n~i~~~~~~~l~~~~~~-~~~L~~l~l~~N~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         255 LSLSCNDITDDGAKDLAEVLAE-KESLLELDLRGNKFGEEGAQLLAESL--LEPGNELESLWVKDDSF  319 (319)
T ss_pred             EEccCCCCCcHHHHHHHHHHhc-CCCccEEECCCCCCcHHHHHHHHHHH--hhcCCchhhcccCCCCC
Confidence            666665432     11112221 24566666666666532  2233333  333 5666666665553

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.55  E-value=6.3e-16  Score=145.55  Aligned_cols=244  Identities=20%  Similarity=0.203  Sum_probs=160.7

Q ss_pred             CCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCC-chhhhccCCCcEE
Q 037732           83 CPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLD-ITVIRDLKKLAVL  161 (350)
Q Consensus        83 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L  161 (350)
                      .-+|.+|++   .++....+|..+ ..+.+|+.|+++.|.+..+|.+...+.+|++|.|.+|.+.. |.++..+.+|++|
T Consensus        44 ~v~L~~l~l---snn~~~~fp~~i-t~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~L  119 (1081)
T KOG0618|consen   44 RVKLKSLDL---SNNQISSFPIQI-TLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYL  119 (1081)
T ss_pred             eeeeEEeec---cccccccCCchh-hhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhccccc
Confidence            344777888   556667777764 36778888888888888888777888888888888887776 7788888888888


Q ss_pred             EecCCCCccccccccCCCCccEEeccCCCCCCccCcc---------------hhCCCCCCcE-EEcCCCCCCcchhhhcc
Q 037732          162 CLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPN---------------ILSNLSHLEE-LYMGPRSFDKWEVEVEG  225 (350)
Q Consensus       162 ~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~---------------~l~~l~~L~~-L~l~~~~~~~~~~~~~~  225 (350)
                      ++++|++..+|.-+..+..+..+..++|..+.+++..               +......+++ |++..|.....+     
T Consensus       120 dlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~d-----  194 (1081)
T KOG0618|consen  120 DLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVLD-----  194 (1081)
T ss_pred             ccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhhhhh-----
Confidence            8888888877777777776666666664222222211               0111122333 666655553111     


Q ss_pred             ccccchhhcC--------------------CCceeEEEecCCCCCCcccccCCccEEEEEEc---CcccccccCccceEE
Q 037732          226 VKNASLHELK--------------------HLISLELQIQDVNTFPRGLFLEKLETFKILIG---GVWGWEYADIWCREF  282 (350)
Q Consensus       226 ~~~~~l~~l~--------------------~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~---~~~~~~~~~~~L~~L  282 (350)
                           +.++.                    +++.|+.+.|.+...-......+|+++++...   .++.|+..+.+|+.+
T Consensus       195 -----ls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l  269 (1081)
T KOG0618|consen  195 -----LSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEAL  269 (1081)
T ss_pred             -----hhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEe
Confidence                 22222                    23333333333322111112456777777543   355677788888888


Q ss_pred             EEeCCCcccchHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEeCccceeccC
Q 037732          283 KIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLTLNPA  346 (350)
Q Consensus       283 ~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~p~  346 (350)
                      +...|....+|..++.. .+|+.|.+..|.+..   +|...  +++..|++|+|..|.+..+|+
T Consensus       270 ~~n~N~l~~lp~ri~~~-~~L~~l~~~~nel~y---ip~~l--e~~~sL~tLdL~~N~L~~lp~  327 (1081)
T KOG0618|consen  270 NANHNRLVALPLRISRI-TSLVSLSAAYNELEY---IPPFL--EGLKSLRTLDLQSNNLPSLPD  327 (1081)
T ss_pred             cccchhHHhhHHHHhhh-hhHHHHHhhhhhhhh---CCCcc--cccceeeeeeehhccccccch
Confidence            88887777777777764 788888888777776   66666  779999999999999999997

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.50  E-value=2.7e-14  Score=127.18  Aligned_cols=236  Identities=17%  Similarity=0.135  Sum_probs=168.8

Q ss_pred             hHHHhcCCcceEEeecCCcCc-----CCCccccCcccccEEEecCCCCCC--------chhhhccCCCcEEEecCCCCc-
Q 037732          104 NKFFERMIQVRVINFSYMNLL-----SLPSSLGLLSNLQNLSLYNCKLLD--------ITVIRDLKKLAVLCLRGSDIK-  169 (350)
Q Consensus       104 ~~~~~~l~~L~~L~l~~~~~~-----~lp~~l~~l~~L~~L~l~~~~l~~--------~~~l~~l~~L~~L~l~~~~~~-  169 (350)
                      ..++..+.+|+.++++++.++     .++..+...+.+++++++++.+..        +..+..+++|+.|++++|.+. 
T Consensus        16 ~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~   95 (319)
T cd00116          16 TELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGP   95 (319)
T ss_pred             HHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCCh
Confidence            344567888999999999884     256667778889999999987762        256677889999999999776 


Q ss_pred             cccccccCC---CCccEEeccCCCCCC----ccCcchhCCC-CCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeE
Q 037732          170 RLPVEVGEL---TLLRLLDLRDCMELE----VIPPNILSNL-SHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLE  241 (350)
Q Consensus       170 ~lp~~l~~l---~~L~~L~l~~~~~~~----~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  241 (350)
                      ..+..+..+   ++|++|++++|....    .+... +..+ ++|++|++++|.+....   ...++..+..+++|++|+
T Consensus        96 ~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~-l~~~~~~L~~L~L~~n~l~~~~---~~~~~~~~~~~~~L~~L~  171 (319)
T cd00116          96 DGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKG-LKDLPPALEKLVLGRNRLEGAS---CEALAKALRANRDLKELN  171 (319)
T ss_pred             hHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHH-HHhCCCCceEEEcCCCcCCchH---HHHHHHHHHhCCCcCEEE
Confidence            344444444   449999999865432    12222 4566 89999999999885321   123455677788999999


Q ss_pred             EEecCCCC-----CCccc-ccCCccEEEEEEcCcc--------cccccCccceEEEEeCCCccc-chHHHHHHh----cc
Q 037732          242 LQIQDVNT-----FPRGL-FLEKLETFKILIGGVW--------GWEYADIWCREFKIDLDSKIR-LKDGLILKL----EG  302 (350)
Q Consensus       242 l~~~~~~~-----l~~~~-~~~~L~~L~l~~~~~~--------~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~----~~  302 (350)
                      +++|.+..     ++..+ ..++|++|++..+.+.        ..+..+++|++|+++++.... ....+...+    +.
T Consensus       172 l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~  251 (319)
T cd00116         172 LANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNIS  251 (319)
T ss_pred             CcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCC
Confidence            99998763     22332 3468999999766542        245678899999999976543 222333333    79


Q ss_pred             cceeeecccccc--chhhhhhhhcccCcCcceEEEEeCccceecc
Q 037732          303 IEDLWLSYLEEQ--DVNYFVNELVKVGPSQLKHLYIRGSHLTLNP  345 (350)
Q Consensus       303 L~~L~L~~n~l~--~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~p  345 (350)
                      |+.|++++|.++  +...+...+  ..+++|+.+++++|.++..+
T Consensus       252 L~~L~l~~n~i~~~~~~~l~~~~--~~~~~L~~l~l~~N~l~~~~  294 (319)
T cd00116         252 LLTLSLSCNDITDDGAKDLAEVL--AEKESLLELDLRGNKFGEEG  294 (319)
T ss_pred             ceEEEccCCCCCcHHHHHHHHHH--hcCCCccEEECCCCCCcHHH
Confidence            999999999997  333344555  56799999999999988654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.48  E-value=2.2e-15  Score=129.55  Aligned_cols=253  Identities=19%  Similarity=0.225  Sum_probs=181.6

Q ss_pred             cccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCc-cccCcccccEEEecCCCCCC--chhhhc
Q 037732           78 LEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPS-SLGLLSNLQNLSLYNCKLLD--ITVIRD  154 (350)
Q Consensus        78 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~l~~--~~~l~~  154 (350)
                      |.-..|++..-..+. .+.....++|..+   -.....++|..|.|+.+|+ .|+.+++||.|||++|.++.  +..+..
T Consensus        38 P~pC~Cs~~~g~~Vd-Cr~~GL~eVP~~L---P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~G  113 (498)
T KOG4237|consen   38 PAPCTCSDVEGGIVD-CRGKGLTEVPANL---PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKG  113 (498)
T ss_pred             CCCcccCCCCCceEE-ccCCCcccCcccC---CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhh
Confidence            333455554433331 1344566777642   2466789999999998776 78999999999999999988  789999


Q ss_pred             cCCCcEEEecC-CCCcccccc-ccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchh
Q 037732          155 LKKLAVLCLRG-SDIKRLPVE-VGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLH  232 (350)
Q Consensus       155 l~~L~~L~l~~-~~~~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~  232 (350)
                      +.+|..|-+.+ |+|+.+|.. ++++..++.|.+.- +.+..++...+..++++..|.+..|.+....       -.++.
T Consensus       114 L~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNa-n~i~Cir~~al~dL~~l~lLslyDn~~q~i~-------~~tf~  185 (498)
T KOG4237|consen  114 LASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNA-NHINCIRQDALRDLPSLSLLSLYDNKIQSIC-------KGTFQ  185 (498)
T ss_pred             hHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcCh-hhhcchhHHHHHHhhhcchhcccchhhhhhc-------ccccc
Confidence            99988877766 799999984 78999999888866 5566677777899999999999888763222       13677


Q ss_pred             hcCCCceeEEEecCCC-------------CCC-----------------------cccccCCccEE--EEEEcCcc----
Q 037732          233 ELKHLISLELQIQDVN-------------TFP-----------------------RGLFLEKLETF--KILIGGVW----  270 (350)
Q Consensus       233 ~l~~L~~L~l~~~~~~-------------~l~-----------------------~~~~~~~L~~L--~l~~~~~~----  270 (350)
                      .+..++.+++..|.+-             ..|                       +.-+.-+++.+  .+.....+    
T Consensus       186 ~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~c  265 (498)
T KOG4237|consen  186 GLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSIC  265 (498)
T ss_pred             chhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcC
Confidence            7888888888777631             001                       10001111111  11111111    


Q ss_pred             --cccccCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEeCccceeccC
Q 037732          271 --GWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLTLNPA  346 (350)
Q Consensus       271 --~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~p~  346 (350)
                        ..+..+++|+.|++++|.+..+.++.+....+++.|.|..|.+..+.  ...|  .++..|+.|+|.+|+++++-+
T Consensus       266 P~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~--~~~f--~~ls~L~tL~L~~N~it~~~~  339 (498)
T KOG4237|consen  266 PAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVS--SGMF--QGLSGLKTLSLYDNQITTVAP  339 (498)
T ss_pred             hHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHH--HHhh--hccccceeeeecCCeeEEEec
Confidence              13778899999999999999888876766799999999999998742  2345  688999999999999998754

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.34  E-value=2.1e-14  Score=128.89  Aligned_cols=196  Identities=17%  Similarity=0.214  Sum_probs=151.6

Q ss_pred             cCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCC-chhhhccCCCcEEEecCCCCccccccccCCCCccEEecc
Q 037732          109 RMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLD-ITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLR  187 (350)
Q Consensus       109 ~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~  187 (350)
                      .+..-...+++.|.+..+|..++.+..|+.+.++.|.+.. +..+.++..|.+++++.|+++.+|..+..|+ |+.|.++
T Consensus        73 ~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~s  151 (722)
T KOG0532|consen   73 DLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVS  151 (722)
T ss_pred             cccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEe
Confidence            3455566888999988899988888899999999998888 8889999999999999999999998888877 8888888


Q ss_pred             CCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCCCCCCcccccCCccEEEEEEc
Q 037732          188 DCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRGLFLEKLETFKILIG  267 (350)
Q Consensus       188 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~  267 (350)
                      + ++++.+|.. ++....|.+|+.+.|.+.        .+|.-++++.+|+.|.+..|.+..+|+++.            
T Consensus       152 N-Nkl~~lp~~-ig~~~tl~~ld~s~nei~--------slpsql~~l~slr~l~vrRn~l~~lp~El~------------  209 (722)
T KOG0532|consen  152 N-NKLTSLPEE-IGLLPTLAHLDVSKNEIQ--------SLPSQLGYLTSLRDLNVRRNHLEDLPEELC------------  209 (722)
T ss_pred             c-CccccCCcc-cccchhHHHhhhhhhhhh--------hchHHhhhHHHHHHHHHhhhhhhhCCHHHh------------
Confidence            7 777888888 688888999998888763        455668888888888888888888888741            


Q ss_pred             CcccccccCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccchhhhhhhhcc-cCcCcceEEEEeCc
Q 037732          268 GVWGWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVK-VGPSQLKHLYIRGS  339 (350)
Q Consensus       268 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~-~~~~~L~~L~l~~~  339 (350)
                              .-.|..|+++.|.+..+|..+.+ +..|++|.|.+|-++.   =|..++. +...-.++|+.+-|
T Consensus       210 --------~LpLi~lDfScNkis~iPv~fr~-m~~Lq~l~LenNPLqS---PPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  210 --------SLPLIRLDFSCNKISYLPVDFRK-MRHLQVLQLENNPLQS---PPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             --------CCceeeeecccCceeecchhhhh-hhhheeeeeccCCCCC---ChHHHHhccceeeeeeecchhc
Confidence                    12467777777777777776665 4788888888887776   3444432 33455566666666

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.32  E-value=1e-12  Score=129.09  Aligned_cols=248  Identities=23%  Similarity=0.253  Sum_probs=153.2

Q ss_pred             ceeeecccccccccccCCCCCccEEEecccCCcc-ccccChHHHhcCCcceEEeecCC-cCcCCCccccCcccccEEEec
Q 037732           65 NVFSATEEQTNLLLEVVECPQLELLFICADKESS-SLTIPNKFFERMIQVRVINFSYM-NLLSLPSSLGLLSNLQNLSLY  142 (350)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~l~~L~~L~l~~~-~~~~lp~~l~~l~~L~~L~l~  142 (350)
                      ...+.-.+.+..++....++++++|.+  ..+.. ...++..+|..++.|++||+++| .+..+|..++.+.+||||+++
T Consensus       526 rr~s~~~~~~~~~~~~~~~~~L~tLll--~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~  603 (889)
T KOG4658|consen  526 RRMSLMNNKIEHIAGSSENPKLRTLLL--QRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLS  603 (889)
T ss_pred             eEEEEeccchhhccCCCCCCccceEEE--eecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccccc
Confidence            344455566666776677889999998  44442 78888888999999999999987 456899999999999999999


Q ss_pred             CCCCCC-chhhhccCCCcEEEecCC-CCccccccccCCCCccEEeccCCC-CCCcc-CcchhCCCCCCcEEEcCCCCC--
Q 037732          143 NCKLLD-ITVIRDLKKLAVLCLRGS-DIKRLPVEVGELTLLRLLDLRDCM-ELEVI-PPNILSNLSHLEELYMGPRSF--  216 (350)
Q Consensus       143 ~~~l~~-~~~l~~l~~L~~L~l~~~-~~~~lp~~l~~l~~L~~L~l~~~~-~~~~~-~~~~l~~l~~L~~L~l~~~~~--  216 (350)
                      ++.+.. |..++++.+|.+|++..+ ....+|.....+++|++|.+.... ..+.. -.+ +.++.+|+.+.......  
T Consensus       604 ~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~e-l~~Le~L~~ls~~~~s~~~  682 (889)
T KOG4658|consen  604 DTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKE-LENLEHLENLSITISSVLL  682 (889)
T ss_pred             CCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHh-hhcccchhhheeecchhHh
Confidence            999999 999999999999999988 444556566679999999987632 11111 111 34444555444432221  


Q ss_pred             -Ccchh---------------hhccccccchhhcCCCceeEEEecCCCCCCccc-------c-cCCccEEEEEEcC---c
Q 037732          217 -DKWEV---------------EVEGVKNASLHELKHLISLELQIQDVNTFPRGL-------F-LEKLETFKILIGG---V  269 (350)
Q Consensus       217 -~~~~~---------------~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~-------~-~~~L~~L~l~~~~---~  269 (350)
                       .....               ......+.++..+.+|+.|.+..+...+.....       . .+++..+.+..+.   .
T Consensus       683 ~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~  762 (889)
T KOG4658|consen  683 LEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRD  762 (889)
T ss_pred             HhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccc
Confidence             00000               001133345566677777777777654321110       0 1122222222222   2


Q ss_pred             ccccccCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccc
Q 037732          270 WGWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQD  315 (350)
Q Consensus       270 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~  315 (350)
                      +.|.--.++|+.|.+..+...+.|....+.+..++.+-+..+.+..
T Consensus       763 l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~  808 (889)
T KOG4658|consen  763 LTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEG  808 (889)
T ss_pred             cchhhccCcccEEEEecccccccCCCHHHHhhhcccEEeccccccc
Confidence            3344456778888887755554443333333445444444444443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.27  E-value=4.6e-13  Score=116.83  Aligned_cols=83  Identities=19%  Similarity=0.177  Sum_probs=37.2

Q ss_pred             HhcCCcceEEeecCCcCcC---CCccccCcccccEEEecCCCCCCc---hhhhccCCCcEEEecCCCCc--cccccccCC
Q 037732          107 FERMIQVRVINFSYMNLLS---LPSSLGLLSNLQNLSLYNCKLLDI---TVIRDLKKLAVLCLRGSDIK--RLPVEVGEL  178 (350)
Q Consensus       107 ~~~l~~L~~L~l~~~~~~~---lp~~l~~l~~L~~L~l~~~~l~~~---~~l~~l~~L~~L~l~~~~~~--~lp~~l~~l  178 (350)
                      .+.|++++.|+|+.|-+..   +..-...+++|+.|+++.|++..+   ..-..+.+|+.|.++.|.++  .+...+..+
T Consensus       142 ~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~f  221 (505)
T KOG3207|consen  142 SKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTF  221 (505)
T ss_pred             hhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhC
Confidence            3445555555555554332   222234455555555555554331   11113444555555555444  222223344


Q ss_pred             CCccEEeccCC
Q 037732          179 TLLRLLDLRDC  189 (350)
Q Consensus       179 ~~L~~L~l~~~  189 (350)
                      ++|..|.+..|
T Consensus       222 Psl~~L~L~~N  232 (505)
T KOG3207|consen  222 PSLEVLYLEAN  232 (505)
T ss_pred             CcHHHhhhhcc
Confidence            55555555543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.15  E-value=3.1e-11  Score=95.98  Aligned_cols=131  Identities=21%  Similarity=0.233  Sum_probs=43.4

Q ss_pred             cCCcceEEeecCCcCcCCCcccc-CcccccEEEecCCCCCCchhhhccCCCcEEEecCCCCccccccc-cCCCCccEEec
Q 037732          109 RMIQVRVINFSYMNLLSLPSSLG-LLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGSDIKRLPVEV-GELTLLRLLDL  186 (350)
Q Consensus       109 ~l~~L~~L~l~~~~~~~lp~~l~-~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~l~~~~~~~lp~~l-~~l~~L~~L~l  186 (350)
                      +...++.|+|.++.++.+.. ++ .+.+|+.|++++|.++.++.+..+++|++|++++|.++.++..+ ..+++|++|.+
T Consensus        17 n~~~~~~L~L~~n~I~~Ie~-L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L   95 (175)
T PF14580_consen   17 NPVKLRELNLRGNQISTIEN-LGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL   95 (175)
T ss_dssp             -------------------S---TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred             cccccccccccccccccccc-hhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence            34456677777776665532 44 45667777777777777666666777777777777777665444 34677777777


Q ss_pred             cCCCCCCccCc-chhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEec
Q 037732          187 RDCMELEVIPP-NILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQ  245 (350)
Q Consensus       187 ~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  245 (350)
                      ++|. +..+.. ..+..+++|+.|++.+|++....    ..-...+..+|+|+.||-..-
T Consensus        96 ~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~----~YR~~vi~~lP~Lk~LD~~~V  150 (175)
T PF14580_consen   96 SNNK-ISDLNELEPLSSLPKLRVLSLEGNPVCEKK----NYRLFVIYKLPSLKVLDGQDV  150 (175)
T ss_dssp             TTS----SCCCCGGGGG-TT--EEE-TT-GGGGST----THHHHHHHH-TT-SEETTEET
T ss_pred             cCCc-CCChHHhHHHHcCCCcceeeccCCcccchh----hHHHHHHHHcChhheeCCEEc
Confidence            6632 222211 11566777777777777763221    122344666777777765443

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.12  E-value=4.3e-11  Score=100.05  Aligned_cols=221  Identities=18%  Similarity=0.149  Sum_probs=150.4

Q ss_pred             cCCcceEEeecCCc-------Cc--CCCccccCcccccEEEecCCCCCCchhh-hccCCCcEEEecCCCCccccccccCC
Q 037732          109 RMIQVRVINFSYMN-------LL--SLPSSLGLLSNLQNLSLYNCKLLDITVI-RDLKKLAVLCLRGSDIKRLPVEVGEL  178 (350)
Q Consensus       109 ~l~~L~~L~l~~~~-------~~--~lp~~l~~l~~L~~L~l~~~~l~~~~~l-~~l~~L~~L~l~~~~~~~lp~~l~~l  178 (350)
                      -+..|..|.+++..       +.  .+|-.+.-+.+|+.+.++.|.-..+..+ ..-+-|+++.+.++.++..|.- --.
T Consensus       180 f~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l-~pe  258 (490)
T KOG1259|consen  180 FCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSL-LPE  258 (490)
T ss_pred             hhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheeceeecCchhheeeeecccccccccc-cch
Confidence            46678888887642       11  2555566677888888888764332111 2235688888877655533321 111


Q ss_pred             CCccEEeccCCC-CC--CccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCCCCCCcccc
Q 037732          179 TLLRLLDLRDCM-EL--EVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRGLF  255 (350)
Q Consensus       179 ~~L~~L~l~~~~-~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~  255 (350)
                      .  ...+.+... ..  +..... +..++.|+++++++|.++.        +.++..-.+.++.|+++.|.+..+....+
T Consensus       259 ~--~~~D~~~~E~~t~~G~~~~~-~dTWq~LtelDLS~N~I~~--------iDESvKL~Pkir~L~lS~N~i~~v~nLa~  327 (490)
T KOG1259|consen  259 T--ILADPSGSEPSTSNGSALVS-ADTWQELTELDLSGNLITQ--------IDESVKLAPKLRRLILSQNRIRTVQNLAE  327 (490)
T ss_pred             h--hhcCccCCCCCccCCceEEe-cchHhhhhhccccccchhh--------hhhhhhhccceeEEeccccceeeehhhhh
Confidence            1  112222210 01  111111 4456778999999998754        34567778899999999999888766448


Q ss_pred             cCCccEEEEEEcCccc---ccccCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcce
Q 037732          256 LEKLETFKILIGGVWG---WEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLK  332 (350)
Q Consensus       256 ~~~L~~L~l~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~  332 (350)
                      +++|+.|+++.+....   |...+.+.+.|.++.|....+. ++.+ +-+|+.|++++|++..+..+ ..+  +.+|.|+
T Consensus       328 L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~LS-GL~K-LYSLvnLDl~~N~Ie~ldeV-~~I--G~LPCLE  402 (490)
T KOG1259|consen  328 LPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETLS-GLRK-LYSLVNLDLSSNQIEELDEV-NHI--GNLPCLE  402 (490)
T ss_pred             cccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhhh-hhHh-hhhheeccccccchhhHHHh-ccc--ccccHHH
Confidence            8999999998766433   6778889999999998877654 4555 47999999999999886444 456  8899999


Q ss_pred             EEEEeCccceeccC
Q 037732          333 HLYIRGSHLTLNPA  346 (350)
Q Consensus       333 ~L~l~~~~~~~~p~  346 (350)
                      .+.+.+||+..+|+
T Consensus       403 ~l~L~~NPl~~~vd  416 (490)
T KOG1259|consen  403 TLRLTGNPLAGSVD  416 (490)
T ss_pred             HHhhcCCCccccch
Confidence            99999999998885

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.11  E-value=3.6e-12  Score=114.77  Aligned_cols=134  Identities=28%  Similarity=0.364  Sum_probs=65.0

Q ss_pred             cCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCC-chhhhccCCCcEEEecCCCCccccccccCCCCccEEecc
Q 037732          109 RMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLD-ITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLR  187 (350)
Q Consensus       109 ~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~  187 (350)
                      ++..|++++++.|++..+|..++.|+ |+.|-+++|++.. |+.++.+..|..||.+.|.+..+|..++.+.+|+.|.+.
T Consensus       119 ~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vr  197 (722)
T KOG0532|consen  119 NLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVR  197 (722)
T ss_pred             hhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHh
Confidence            44445555555555444444443332 4445555554444 444444444555555555555555545555555555544


Q ss_pred             CCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCCCCCCccc
Q 037732          188 DCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRGL  254 (350)
Q Consensus       188 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~  254 (350)
                      . +.+..+|++ +..+ .|..||++.|++.        .+|..|.+|+.|++|-+.+|.+.+-|..+
T Consensus       198 R-n~l~~lp~E-l~~L-pLi~lDfScNkis--------~iPv~fr~m~~Lq~l~LenNPLqSPPAqI  253 (722)
T KOG0532|consen  198 R-NHLEDLPEE-LCSL-PLIRLDFSCNKIS--------YLPVDFRKMRHLQVLQLENNPLQSPPAQI  253 (722)
T ss_pred             h-hhhhhCCHH-HhCC-ceeeeecccCcee--------ecchhhhhhhhheeeeeccCCCCCChHHH
Confidence            4 334444444 2322 2455555544432        33444555555555555555555555554

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.08  E-value=1.2e-11  Score=103.35  Aligned_cols=134  Identities=17%  Similarity=0.192  Sum_probs=112.0

Q ss_pred             CCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCCchhhhccCCCcEEEecCCCCccccccccCCCCccEEeccCC
Q 037732          110 MIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDC  189 (350)
Q Consensus       110 l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~  189 (350)
                      ++.|+.+|+++|.++.+.+++.-++.++.|++++|.+..+..+..+++|..||+++|.+..+...-.++-+.++|.++. 
T Consensus       283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~-  361 (490)
T KOG1259|consen  283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ-  361 (490)
T ss_pred             HhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh-
Confidence            5678899999999998888888889999999999999988889999999999999998887765556788899999988 


Q ss_pred             CCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCCCCCCc
Q 037732          190 MELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPR  252 (350)
Q Consensus       190 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~  252 (350)
                      +.++.+..  ++++-+|..|++.+|++...+.      ...+++++.|+.+.+.+|++..++.
T Consensus       362 N~iE~LSG--L~KLYSLvnLDl~~N~Ie~lde------V~~IG~LPCLE~l~L~~NPl~~~vd  416 (490)
T KOG1259|consen  362 NKIETLSG--LRKLYSLVNLDLSSNQIEELDE------VNHIGNLPCLETLRLTGNPLAGSVD  416 (490)
T ss_pred             hhHhhhhh--hHhhhhheeccccccchhhHHH------hcccccccHHHHHhhcCCCccccch
Confidence            66666555  7888899999999999865443      2458899999999999998876553

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.07  E-value=2e-11  Score=106.79  Aligned_cols=211  Identities=20%  Similarity=0.175  Sum_probs=140.0

Q ss_pred             hcCCcceEEeecCCcCcCCC--ccccCcccccEEEecCCCCCC----chhhhccCCCcEEEecCCCCcccccc--ccCCC
Q 037732          108 ERMIQVRVINFSYMNLLSLP--SSLGLLSNLQNLSLYNCKLLD----ITVIRDLKKLAVLCLRGSDIKRLPVE--VGELT  179 (350)
Q Consensus       108 ~~l~~L~~L~l~~~~~~~lp--~~l~~l~~L~~L~l~~~~l~~----~~~l~~l~~L~~L~l~~~~~~~lp~~--l~~l~  179 (350)
                      +++++|+.+.|.++.+...+  .....|++++.||+++|-+..    ..-..++++|+.|+++.|++.....+  -..++
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence            36788999999988877655  367789999999999997765    25567899999999999977643332  23567


Q ss_pred             CccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCCCCCCcc---ccc
Q 037732          180 LLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRG---LFL  256 (350)
Q Consensus       180 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~---~~~  256 (350)
                      +|+.|.++.|+..+.-...++..+++|..|++..|..       .........-++.|+.|++++|.+-+++..   ..+
T Consensus       198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~-------~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l  270 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEI-------ILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTL  270 (505)
T ss_pred             hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccc-------cceecchhhhhhHHhhccccCCcccccccccccccc
Confidence            8999999998876654445567889999999998853       122223344567799999999987655422   256


Q ss_pred             CCccEEEEEEcCccccc-ccCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEE
Q 037732          257 EKLETFKILIGGVWGWE-YADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLY  335 (350)
Q Consensus       257 ~~L~~L~l~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~  335 (350)
                      +.|+.|++..+++.+.- ..+.++.               ....+++|+.|++..|.+++|+.+- .+  ..+++|++|.
T Consensus       271 ~~L~~Lnls~tgi~si~~~d~~s~~---------------kt~~f~kL~~L~i~~N~I~~w~sl~-~l--~~l~nlk~l~  332 (505)
T KOG3207|consen  271 PGLNQLNLSSTGIASIAEPDVESLD---------------KTHTFPKLEYLNISENNIRDWRSLN-HL--RTLENLKHLR  332 (505)
T ss_pred             cchhhhhccccCcchhcCCCccchh---------------hhcccccceeeecccCccccccccc-hh--hccchhhhhh
Confidence            67777777665544321 0110000               1223567777777777776664442 23  3456666666


Q ss_pred             EeCcccee
Q 037732          336 IRGSHLTL  343 (350)
Q Consensus       336 l~~~~~~~  343 (350)
                      +..|+++.
T Consensus       333 ~~~n~ln~  340 (505)
T KOG3207|consen  333 ITLNYLNK  340 (505)
T ss_pred             cccccccc
Confidence            66666543

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.05  E-value=1.9e-10  Score=105.60  Aligned_cols=193  Identities=23%  Similarity=0.283  Sum_probs=121.2

Q ss_pred             EEEecCCCCCC-chhhhccCCCcEEEecCCCCccccccccCCC-CccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCC
Q 037732          138 NLSLYNCKLLD-ITVIRDLKKLAVLCLRGSDIKRLPVEVGELT-LLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRS  215 (350)
Q Consensus       138 ~L~l~~~~l~~-~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~-~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  215 (350)
                      .++...+.+.. +..+..+..+..|++.++.+..++....... +|+.|+++. +.+..+|.. ++.+++|+.|+++.|+
T Consensus        97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~-N~i~~l~~~-~~~l~~L~~L~l~~N~  174 (394)
T COG4886          97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSD-NKIESLPSP-LRNLPNLKNLDLSFND  174 (394)
T ss_pred             eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccc-cchhhhhhh-hhccccccccccCCch
Confidence            45555555533 5555555666666666666666666666553 666666666 445555433 5666777777776666


Q ss_pred             CCcchhhhccccccchhhcCCCceeEEEecCCCCCCccc-ccCCccEEEEEEcC---cccccccCccceEEEEeCCCccc
Q 037732          216 FDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRGL-FLEKLETFKILIGG---VWGWEYADIWCREFKIDLDSKIR  291 (350)
Q Consensus       216 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~---~~~~~~~~~~L~~L~l~~~~~~~  291 (350)
                      +.        .++...+..+.|+.|++++|.+..+|..+ ....|+++.+..+.   ....+....++..+.+.++....
T Consensus       175 l~--------~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~  246 (394)
T COG4886         175 LS--------DLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLED  246 (394)
T ss_pred             hh--------hhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeee
Confidence            53        22333335666777777777777776654 34556666665552   23345566666666666666555


Q ss_pred             chHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEeCccceeccCC
Q 037732          292 LKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLTLNPAE  347 (350)
Q Consensus       292 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~p~~  347 (350)
                      .+..+.. +++++.|++++|.++.+   +. +  ..+.+|+.|+++++.++..|+.
T Consensus       247 ~~~~~~~-l~~l~~L~~s~n~i~~i---~~-~--~~~~~l~~L~~s~n~~~~~~~~  295 (394)
T COG4886         247 LPESIGN-LSNLETLDLSNNQISSI---SS-L--GSLTNLRELDLSGNSLSNALPL  295 (394)
T ss_pred             ccchhcc-ccccceecccccccccc---cc-c--cccCccCEEeccCccccccchh
Confidence            4544554 47789999998888884   33 4  6778899999988887766553

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.99  E-value=6e-10  Score=88.65  Aligned_cols=135  Identities=22%  Similarity=0.232  Sum_probs=50.8

Q ss_pred             ccccccccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCCc-hh
Q 037732           73 QTNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDI-TV  151 (350)
Q Consensus        73 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~-~~  151 (350)
                      .++..+...+..+++.|++   .+..+..+.. ....+.+|+.|++++|.+..++. +..++.|+.|++++|.++.. +.
T Consensus         8 ~i~~~~~~~n~~~~~~L~L---~~n~I~~Ie~-L~~~l~~L~~L~Ls~N~I~~l~~-l~~L~~L~~L~L~~N~I~~i~~~   82 (175)
T PF14580_consen    8 MIEQIAQYNNPVKLRELNL---RGNQISTIEN-LGATLDKLEVLDLSNNQITKLEG-LPGLPRLKTLDLSNNRISSISEG   82 (175)
T ss_dssp             -------------------------------S---TT-TT--EEE-TTS--S--TT-----TT--EEE--SS---S-CHH
T ss_pred             ccccccccccccccccccc---cccccccccc-hhhhhcCCCEEECCCCCCccccC-ccChhhhhhcccCCCCCCccccc
Confidence            4445555566678888999   4444444432 22257889999999999988754 77889999999999999884 44


Q ss_pred             h-hccCCCcEEEecCCCCccccc--cccCCCCccEEeccCCCCCCc--cCcchhCCCCCCcEEEcC
Q 037732          152 I-RDLKKLAVLCLRGSDIKRLPV--EVGELTLLRLLDLRDCMELEV--IPPNILSNLSHLEELYMG  212 (350)
Q Consensus       152 l-~~l~~L~~L~l~~~~~~~lp~--~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~l~~L~~L~l~  212 (350)
                      + ..+++|+.|++++|++..+..  .+..+++|+.|++.+|.....  ....++..+++|+.||-.
T Consensus        83 l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   83 LDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             HHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             hHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence            5 468999999999998875543  567889999999988543321  123457788999999754

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.93  E-value=2.2e-10  Score=97.63  Aligned_cols=138  Identities=14%  Similarity=0.091  Sum_probs=80.0

Q ss_pred             CCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCCCC-----CCccc-ccCCccEEEEEEcCc------
Q 037732          202 NLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNT-----FPRGL-FLEKLETFKILIGGV------  269 (350)
Q Consensus       202 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-----l~~~~-~~~~L~~L~l~~~~~------  269 (350)
                      .-+.|+.+....|.+....   .......++..+.|+.+.++.|.+..     +...+ .+++|+.|++..+..      
T Consensus       155 ~~~~Lrv~i~~rNrlen~g---a~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~  231 (382)
T KOG1909|consen  155 SKPKLRVFICGRNRLENGG---ATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSV  231 (382)
T ss_pred             CCcceEEEEeecccccccc---HHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHH
Confidence            3445666666655553222   11233445556666666666666532     11122 356666666654331      


Q ss_pred             --ccccccCccceEEEEeCC-----CcccchHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEeCccce
Q 037732          270 --WGWEYADIWCREFKIDLD-----SKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLT  342 (350)
Q Consensus       270 --~~~~~~~~~L~~L~l~~~-----~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~  342 (350)
                        ...++..++|+.|+++.+     +...+-.++.+..|+|+.|.+.+|.++.-........-...|.|+.|+|++|.+.
T Consensus       232 ~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  232 ALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             HHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence              123455667888887763     3344555666667899999999998865322222221145799999999999883

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.85  E-value=2e-09  Score=98.85  Aligned_cols=170  Identities=28%  Similarity=0.375  Sum_probs=120.0

Q ss_pred             cCCcceEEeecCCcCcCCCccccCcc-cccEEEecCCCCCC-chhhhccCCCcEEEecCCCCccccccccCCCCccEEec
Q 037732          109 RMIQVRVINFSYMNLLSLPSSLGLLS-NLQNLSLYNCKLLD-ITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDL  186 (350)
Q Consensus       109 ~l~~L~~L~l~~~~~~~lp~~l~~l~-~L~~L~l~~~~l~~-~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l  186 (350)
                      .+..++.|++.++.+..++.....+. +|+.|++++|.+.. +..+..+++|+.|+++.|++..+|...+..++|+.|++
T Consensus       114 ~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~l  193 (394)
T COG4886         114 ELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDL  193 (394)
T ss_pred             cccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheec
Confidence            55778888888888888887777664 88888888888888 46888888888888888888888877767888888888


Q ss_pred             cCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCCCCCCccc-ccCCccEEEEE
Q 037732          187 RDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRGL-FLEKLETFKIL  265 (350)
Q Consensus       187 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~-~~~~L~~L~l~  265 (350)
                      ++ +.+..+|.. +..+..|+++.+++|...        ..+..+..++.+..+.+..|.+..++..+ .++.++.|++.
T Consensus       194 s~-N~i~~l~~~-~~~~~~L~~l~~~~N~~~--------~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s  263 (394)
T COG4886         194 SG-NKISDLPPE-IELLSALEELDLSNNSII--------ELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLS  263 (394)
T ss_pred             cC-CccccCchh-hhhhhhhhhhhhcCCcce--------ecchhhhhcccccccccCCceeeeccchhccccccceeccc
Confidence            88 666777775 356666888888877431        33445777777777777777766655554 45556666665


Q ss_pred             EcCccc--ccccCccceEEEEeCCC
Q 037732          266 IGGVWG--WEYADIWCREFKIDLDS  288 (350)
Q Consensus       266 ~~~~~~--~~~~~~~L~~L~l~~~~  288 (350)
                      .+.+..  .++...+++.|+++++.
T Consensus       264 ~n~i~~i~~~~~~~~l~~L~~s~n~  288 (394)
T COG4886         264 NNQISSISSLGSLTNLRELDLSGNS  288 (394)
T ss_pred             cccccccccccccCccCEEeccCcc
Confidence            444322  14455566666665543

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.81  E-value=4.6e-09  Score=89.73  Aligned_cols=217  Identities=17%  Similarity=0.081  Sum_probs=127.8

Q ss_pred             cCCcceEEeecCCcCcC-----CCccccCcccccEEEecCCCC---CC--chhhhccCCCcEEEecCCCCccccccccCC
Q 037732          109 RMIQVRVINFSYMNLLS-----LPSSLGLLSNLQNLSLYNCKL---LD--ITVIRDLKKLAVLCLRGSDIKRLPVEVGEL  178 (350)
Q Consensus       109 ~l~~L~~L~l~~~~~~~-----lp~~l~~l~~L~~L~l~~~~l---~~--~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l  178 (350)
                      .+..++.+++++|.+..     +.+.+...+.|+.-++++-.-   ..  |+.+.                .+.+.+..+
T Consensus        28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~----------------~l~~aL~~~   91 (382)
T KOG1909|consen   28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALK----------------MLSKALLGC   91 (382)
T ss_pred             ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHH----------------HHHHHHhcC
Confidence            45666777777776652     344455555555555554211   11  11110                111233445


Q ss_pred             CCccEEeccCCCCCCccCc---chhCCCCCCcEEEcCCCCCCcchhhhccc------cccchhhcCCCceeEEEecCCCC
Q 037732          179 TLLRLLDLRDCMELEVIPP---NILSNLSHLEELYMGPRSFDKWEVEVEGV------KNASLHELKHLISLELQIQDVNT  249 (350)
Q Consensus       179 ~~L~~L~l~~~~~~~~~~~---~~l~~l~~L~~L~l~~~~~~~~~~~~~~~------~~~~l~~l~~L~~L~l~~~~~~~  249 (350)
                      ++|+.+++|.|..-...++   ..+..+.+|++|.+.+|.+....+...+.      .....++-+.|+.+....|.+..
T Consensus        92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen  171 (382)
T KOG1909|consen   92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN  171 (382)
T ss_pred             CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc
Confidence            5666666666433222221   22555666777777666654332211000      22334556789999999998875


Q ss_pred             CCccc------ccCCccEEEEEEcCccc--------ccccCccceEEEEeCCCccc-----chHHHHHHhcccceeeecc
Q 037732          250 FPRGL------FLEKLETFKILIGGVWG--------WEYADIWCREFKIDLDSKIR-----LKDGLILKLEGIEDLWLSY  310 (350)
Q Consensus       250 l~~~~------~~~~L~~L~l~~~~~~~--------~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~~L~~L~L~~  310 (350)
                      -+...      ..+.|+.+.+..+.+..        .+..|++|+.|++..|....     +..++.. +++|+.|+++.
T Consensus       172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s-~~~L~El~l~d  250 (382)
T KOG1909|consen  172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSS-WPHLRELNLGD  250 (382)
T ss_pred             ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcc-cchheeecccc
Confidence            54332      45889999997766533        36789999999999874433     3333443 47899999998


Q ss_pred             ccccc--hhhhhhhhcccCcCcceEEEEeCcccee
Q 037732          311 LEEQD--VNYFVNELVKVGPSQLKHLYIRGSHLTL  343 (350)
Q Consensus       311 n~l~~--~~~~~~~l~~~~~~~L~~L~l~~~~~~~  343 (350)
                      +.+..  ...+...+. +..|+|+.|.+.+|.++-
T Consensus       251 cll~~~Ga~a~~~al~-~~~p~L~vl~l~gNeIt~  284 (382)
T KOG1909|consen  251 CLLENEGAIAFVDALK-ESAPSLEVLELAGNEITR  284 (382)
T ss_pred             cccccccHHHHHHHHh-ccCCCCceeccCcchhHH
Confidence            87753  334445554 458999999999998763

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.68  E-value=1.1e-09  Score=100.79  Aligned_cols=221  Identities=21%  Similarity=0.200  Sum_probs=94.3

Q ss_pred             cCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCCchhhhccCCCcEEEecCCCCccccccccCCCCccEEeccC
Q 037732          109 RMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRD  188 (350)
Q Consensus       109 ~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~  188 (350)
                      .+.++..+++.+|.+..+...+..+++|++|++++|.++....+..+..|+.|++.+|.+..+. .+..++.|+.+++++
T Consensus        93 ~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l~l~~  171 (414)
T KOG0531|consen   93 KLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDIS-GLESLKSLKLLDLSY  171 (414)
T ss_pred             cccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhcc-CCccchhhhcccCCc
Confidence            3455555555555555444334445555555555555555544555555555555555555443 333355555555555


Q ss_pred             CCCCCccCc-chhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCCCCCCcccccC--CccEEEEE
Q 037732          189 CMELEVIPP-NILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRGLFLE--KLETFKIL  265 (350)
Q Consensus       189 ~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~--~L~~L~l~  265 (350)
                      |. +..+.. . ...+.+++.+.+.+|.+...         ..+..+..+..+++..|.+..+-......  +|+.+.+.
T Consensus       172 n~-i~~ie~~~-~~~~~~l~~l~l~~n~i~~i---------~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~  240 (414)
T KOG0531|consen  172 NR-IVDIENDE-LSELISLEELDLGGNSIREI---------EGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLS  240 (414)
T ss_pred             ch-hhhhhhhh-hhhccchHHHhccCCchhcc---------cchHHHHHHHHhhcccccceeccCcccchhHHHHHHhcc
Confidence            22 222222 1 13444555555555444221         11222333333344444433322111111  14444444


Q ss_pred             EcCccc---ccccCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEeCccce
Q 037732          266 IGGVWG---WEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLT  342 (350)
Q Consensus       266 ~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~  342 (350)
                      .+.+..   .+.....+..|++..+.......  ....+.+..+....|.+.........-.....+.++...+..++..
T Consensus       241 ~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (414)
T KOG0531|consen  241 GNRISRSPEGLENLKNLPVLDLSSNRISNLEG--LERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIR  318 (414)
T ss_pred             cCccccccccccccccccccchhhcccccccc--ccccchHHHhccCcchhcchhhhhccccccccccccccccccCccc
Confidence            333322   23344445555554433322221  1112444444554444432111111100134566666666666654


Q ss_pred             e
Q 037732          343 L  343 (350)
Q Consensus       343 ~  343 (350)
                      .
T Consensus       319 ~  319 (414)
T KOG0531|consen  319 K  319 (414)
T ss_pred             c
Confidence            4

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.65  E-value=4.3e-09  Score=96.99  Aligned_cols=79  Identities=28%  Similarity=0.412  Sum_probs=40.4

Q ss_pred             cCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCCchhhhccCCCcEEEecCCCCcccccc-ccCCCCccEEecc
Q 037732          109 RMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGSDIKRLPVE-VGELTLLRLLDLR  187 (350)
Q Consensus       109 ~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~l~~~~~~~lp~~-l~~l~~L~~L~l~  187 (350)
                      .+.+|++|++++|.|+.+.. +..++.|+.|++++|.+...+.+..+.+|+.+++++|.+..+... ...+.+++.+.+.
T Consensus       116 ~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~  194 (414)
T KOG0531|consen  116 SLVNLQVLDLSFNKITKLEG-LSTLTLLKELNLSGNLISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLG  194 (414)
T ss_pred             hhhcchheeccccccccccc-hhhccchhhheeccCcchhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhcc
Confidence            45555555555555554432 344445555555555555544444455555555555555544432 3444555555554


Q ss_pred             C
Q 037732          188 D  188 (350)
Q Consensus       188 ~  188 (350)
                      +
T Consensus       195 ~  195 (414)
T KOG0531|consen  195 G  195 (414)
T ss_pred             C
Confidence            4

>PLN03150 hypothetical protein; Provisional

Probab=98.64  E-value=9.2e-08  Score=92.34  Aligned_cols=105  Identities=28%  Similarity=0.325  Sum_probs=88.4

Q ss_pred             cccEEEecCCCCCC--chhhhccCCCcEEEecCCCCc-cccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEc
Q 037732          135 NLQNLSLYNCKLLD--ITVIRDLKKLAVLCLRGSDIK-RLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYM  211 (350)
Q Consensus       135 ~L~~L~l~~~~l~~--~~~l~~l~~L~~L~l~~~~~~-~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l  211 (350)
                      .++.|+|++|.+.+  +..++.+++|+.|++++|.+. .+|..++.+++|+.|++++|...+.+|.. ++++++|+.|++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~L  497 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNL  497 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEEC
Confidence            47889999998877  788999999999999999887 78888999999999999997777778877 789999999999


Q ss_pred             CCCCCCcchhhhccccccchhhc-CCCceeEEEecCC
Q 037732          212 GPRSFDKWEVEVEGVKNASLHEL-KHLISLELQIQDV  247 (350)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~  247 (350)
                      ++|.+       .+.+|..++.+ .++..+++.+|..
T Consensus       498 s~N~l-------~g~iP~~l~~~~~~~~~l~~~~N~~  527 (623)
T PLN03150        498 NGNSL-------SGRVPAALGGRLLHRASFNFTDNAG  527 (623)
T ss_pred             cCCcc-------cccCChHHhhccccCceEEecCCcc
Confidence            99988       67788777764 4667888887753

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.56  E-value=7.9e-08  Score=62.83  Aligned_cols=56  Identities=27%  Similarity=0.392  Sum_probs=27.6

Q ss_pred             cceEEeecCCcCcCCCc-cccCcccccEEEecCCCCCC--chhhhccCCCcEEEecCCC
Q 037732          112 QVRVINFSYMNLLSLPS-SLGLLSNLQNLSLYNCKLLD--ITVIRDLKKLAVLCLRGSD  167 (350)
Q Consensus       112 ~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~l~~~~  167 (350)
                      +|++|++++|.+..+|. .|..+++|++|++++|.+..  +..+..+++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            44555555555554432 34455555555555555444  2344555555555555443

...

>PLN03150 hypothetical protein; Provisional

Probab=98.56  E-value=2.1e-07  Score=89.92  Aligned_cols=102  Identities=25%  Similarity=0.338  Sum_probs=82.9

Q ss_pred             CCcEEEecCCCCc-cccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcC
Q 037732          157 KLAVLCLRGSDIK-RLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELK  235 (350)
Q Consensus       157 ~L~~L~l~~~~~~-~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~  235 (350)
                      .+..|++++|.+. .+|..+..+++|+.|++++|...+.+|.. ++.+++|+.|++++|.+       .+.+|+.+++++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~-~~~l~~L~~LdLs~N~l-------sg~iP~~l~~L~  490 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPS-LGSITSLEVLDLSYNSF-------NGSIPESLGQLT  490 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChH-HhCCCCCCEEECCCCCC-------CCCCchHHhcCC
Confidence            3778899988887 78888999999999999997766788877 78999999999999988       678888899999


Q ss_pred             CCceeEEEecCCC-CCCccc-c-cCCccEEEEEE
Q 037732          236 HLISLELQIQDVN-TFPRGL-F-LEKLETFKILI  266 (350)
Q Consensus       236 ~L~~L~l~~~~~~-~l~~~~-~-~~~L~~L~l~~  266 (350)
                      +|+.|++++|.+. .+|..+ . ..++..+.+..
T Consensus       491 ~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~  524 (623)
T PLN03150        491 SLRILNLNGNSLSGRVPAALGGRLLHRASFNFTD  524 (623)
T ss_pred             CCCEEECcCCcccccCChHHhhccccCceEEecC
Confidence            9999999999875 677665 2 24455666643

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.54  E-value=3.8e-08  Score=64.33  Aligned_cols=61  Identities=13%  Similarity=0.107  Sum_probs=52.6

Q ss_pred             ccceEEEEeCCCcccchHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEeCccc
Q 037732          277 IWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHL  341 (350)
Q Consensus       277 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~  341 (350)
                      |+|+.|++++|....+|...+..+++|+.|++++|.++.+  -+..+  ..+++|++|++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i--~~~~f--~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSI--PPDAF--SNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEE--ETTTT--TTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCcc--CHHHH--cCCCCCCEEeCcCCcC
Confidence            5789999999999999877666789999999999999884  34566  7899999999999975

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.46  E-value=6.3e-09  Score=96.88  Aligned_cols=201  Identities=20%  Similarity=0.242  Sum_probs=108.3

Q ss_pred             CCcceEEeecCCcCc--CCCccccCcccccEEEecCCCCCCchhhhccC-CCcEEEecCCCCccccc-------ccc---
Q 037732          110 MIQVRVINFSYMNLL--SLPSSLGLLSNLQNLSLYNCKLLDITVIRDLK-KLAVLCLRGSDIKRLPV-------EVG---  176 (350)
Q Consensus       110 l~~L~~L~l~~~~~~--~lp~~l~~l~~L~~L~l~~~~l~~~~~l~~l~-~L~~L~l~~~~~~~lp~-------~l~---  176 (350)
                      +.++++|.+-...-.  .-|-.+..+..||.|.+++|.+.....+..+. .|++|. ..+.+..+-.       .+.   
T Consensus        83 lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LI-C~~Sl~Al~~v~ascggd~~ns~  161 (1096)
T KOG1859|consen   83 LQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLI-CHNSLDALRHVFASCGGDISNSP  161 (1096)
T ss_pred             HhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhhhhhHHHHHhhhhhh-hhccHHHHHHHHHHhccccccch
Confidence            455555655444322  12556677788888888888776533222221 233332 1222221111       111   


Q ss_pred             CCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCCCCCCccccc
Q 037732          177 ELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRGLFL  256 (350)
Q Consensus       177 ~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~  256 (350)
                      .+..|.+.+.++ +.+..+... +.-++.|+.|+++.|++...         +.+..++.|+.|+++.|.+..+|..-  
T Consensus       162 ~Wn~L~~a~fsy-N~L~~mD~S-Lqll~ale~LnLshNk~~~v---------~~Lr~l~~LkhLDlsyN~L~~vp~l~--  228 (1096)
T KOG1859|consen  162 VWNKLATASFSY-NRLVLMDES-LQLLPALESLNLSHNKFTKV---------DNLRRLPKLKHLDLSYNCLRHVPQLS--  228 (1096)
T ss_pred             hhhhHhhhhcch-hhHHhHHHH-HHHHHHhhhhccchhhhhhh---------HHHHhcccccccccccchhccccccc--
Confidence            122344444444 334444443 45556667777776666322         24666677777777777766655431  


Q ss_pred             CCccEEEEEEcCcccccccCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEE
Q 037732          257 EKLETFKILIGGVWGWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYI  336 (350)
Q Consensus       257 ~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l  336 (350)
                                      ...|. |..|.+++|...++- ++. .+.+|+.||++.|.+.+...+.. +  ..+..|+.|+|
T Consensus       229 ----------------~~gc~-L~~L~lrnN~l~tL~-gie-~LksL~~LDlsyNll~~hseL~p-L--wsLs~L~~L~L  286 (1096)
T KOG1859|consen  229 ----------------MVGCK-LQLLNLRNNALTTLR-GIE-NLKSLYGLDLSYNLLSEHSELEP-L--WSLSSLIVLWL  286 (1096)
T ss_pred             ----------------hhhhh-heeeeecccHHHhhh-hHH-hhhhhhccchhHhhhhcchhhhH-H--HHHHHHHHHhh
Confidence                            11333 777777776665543 233 35788888888887765433321 2  23577888888


Q ss_pred             eCccceeccC
Q 037732          337 RGSHLTLNPA  346 (350)
Q Consensus       337 ~~~~~~~~p~  346 (350)
                      .|||+-+-|.
T Consensus       287 eGNPl~c~p~  296 (1096)
T KOG1859|consen  287 EGNPLCCAPW  296 (1096)
T ss_pred             cCCccccCHH
Confidence            8888776553

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.46  E-value=8.9e-09  Score=86.30  Aligned_cols=171  Identities=18%  Similarity=0.047  Sum_probs=84.4

Q ss_pred             CcEEEecCCCCc--cccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcC
Q 037732          158 LAVLCLRGSDIK--RLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELK  235 (350)
Q Consensus       158 L~~L~l~~~~~~--~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~  235 (350)
                      |+++|++...++  .+...+..|.+|+.|.+.+...-+.+... +++-.+|+.|+++++...+     ....--.+.+++
T Consensus       187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~-iAkN~~L~~lnlsm~sG~t-----~n~~~ll~~scs  260 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNT-IAKNSNLVRLNLSMCSGFT-----ENALQLLLSSCS  260 (419)
T ss_pred             hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHH-Hhccccceeeccccccccc-----hhHHHHHHHhhh
Confidence            555555555444  33333445555555555553333333333 4445555555555543211     011112244555


Q ss_pred             CCceeEEEecCCCC--CCccc--ccCCccEEEEEEcC-------cccccccCccceEEEEeCCCccc--chHHHHHHhcc
Q 037732          236 HLISLELQIQDVNT--FPRGL--FLEKLETFKILIGG-------VWGWEYADIWCREFKIDLDSKIR--LKDGLILKLEG  302 (350)
Q Consensus       236 ~L~~L~l~~~~~~~--l~~~~--~~~~L~~L~l~~~~-------~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~  302 (350)
                      .|..|++++|.+..  +...+  .-++|..|++..+.       +......||+|.+|+++.+....  .-..+.+ |+.
T Consensus       261 ~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~k-f~~  339 (419)
T KOG2120|consen  261 RLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFK-FNY  339 (419)
T ss_pred             hHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHh-cch
Confidence            56666666655321  11111  12445555553221       12234577888888887743222  1122333 688


Q ss_pred             cceeeeccccccchhhhhhhh-cccCcCcceEEEEeCc
Q 037732          303 IEDLWLSYLEEQDVNYFVNEL-VKVGPSQLKHLYIRGS  339 (350)
Q Consensus       303 L~~L~L~~n~l~~~~~~~~~l-~~~~~~~L~~L~l~~~  339 (350)
                      |+.|.++  +|.++  +|..+ .....|.|.+|++.+|
T Consensus       340 L~~lSls--RCY~i--~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  340 LQHLSLS--RCYDI--IPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             heeeehh--hhcCC--ChHHeeeeccCcceEEEEeccc
Confidence            8888888  55553  33222 2256788888888776

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.38  E-value=3.2e-08  Score=83.00  Aligned_cols=172  Identities=15%  Similarity=0.079  Sum_probs=95.5

Q ss_pred             cceEEeecCCcCcC--CCccccCcccccEEEecCCCCCC--chhhhccCCCcEEEecCC-CCcccc--ccccCCCCccEE
Q 037732          112 QVRVINFSYMNLLS--LPSSLGLLSNLQNLSLYNCKLLD--ITVIRDLKKLAVLCLRGS-DIKRLP--VEVGELTLLRLL  184 (350)
Q Consensus       112 ~L~~L~l~~~~~~~--lp~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~l~~~-~~~~lp--~~l~~l~~L~~L  184 (350)
                      .++.+||+...++.  +-.-++.+.+|+.|.+.++++.+  ...+.+-.+|+.++++.| .+++..  -.+.+|+.|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            36677777776662  33445667777777777777777  366677777777777776 555322  235677777777


Q ss_pred             eccCCCCCCccCcchhCCC-CCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCC-C-CCCccc-ccCCcc
Q 037732          185 DLRDCMELEVIPPNILSNL-SHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDV-N-TFPRGL-FLEKLE  260 (350)
Q Consensus       185 ~l~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~-~l~~~~-~~~~L~  260 (350)
                      +++.|........-.+.+. .+|..|+++|+..--.    ...+..-...+++|..|+++.|-. . .....+ .++.|+
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~----~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~  341 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQ----KSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQ  341 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhh----hhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhe
Confidence            7777654433222112222 4567777776542100    011222234567777777776641 1 111111 345566


Q ss_pred             EEEEEEcCcc--c---ccccCccceEEEEeCC
Q 037732          261 TFKILIGGVW--G---WEYADIWCREFKIDLD  287 (350)
Q Consensus       261 ~L~l~~~~~~--~---~~~~~~~L~~L~l~~~  287 (350)
                      +|.+..|-..  .   -+...|+|++|++.+.
T Consensus       342 ~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  342 HLSLSRCYDIIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             eeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence            6665443211  1   2456677777777764

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.32  E-value=6.2e-08  Score=81.30  Aligned_cols=41  Identities=20%  Similarity=0.119  Sum_probs=25.1

Q ss_pred             hcccceeeeccccccchhhhhhhhcccCcCcceEEEEeCcccee
Q 037732          300 LEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLTL  343 (350)
Q Consensus       300 ~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~  343 (350)
                      +|.+-.|+|+.|++..|..+ ..+  .+||.|+.|++.++|+..
T Consensus       223 ~p~~~~LnL~~~~idswasv-D~L--n~f~~l~dlRv~~~Pl~d  263 (418)
T KOG2982|consen  223 FPSLSCLNLGANNIDSWASV-DAL--NGFPQLVDLRVSENPLSD  263 (418)
T ss_pred             CCcchhhhhcccccccHHHH-HHH--cCCchhheeeccCCcccc
Confidence            35555666666666666443 344  566777777777766654

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.30  E-value=7.4e-07  Score=53.54  Aligned_cols=41  Identities=22%  Similarity=0.234  Sum_probs=34.3

Q ss_pred             cccceeeeccccccchhhhhhhhcccCcCcceEEEEeCccceeccC
Q 037732          301 EGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLTLNPA  346 (350)
Q Consensus       301 ~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~p~  346 (350)
                      ++|++|++++|++++   ++..+  ..+++|+.|++++|+++.+|+
T Consensus         1 ~~L~~L~l~~N~i~~---l~~~l--~~l~~L~~L~l~~N~i~~i~~   41 (44)
T PF12799_consen    1 KNLEELDLSNNQITD---LPPEL--SNLPNLETLNLSNNPISDISP   41 (44)
T ss_dssp             TT-SEEEETSSS-SS---HGGHG--TTCTTSSEEEETSSCCSBEGG
T ss_pred             CcceEEEccCCCCcc---cCchH--hCCCCCCEEEecCCCCCCCcC
Confidence            579999999999998   66667  789999999999999998875

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.25  E-value=1.6e-08  Score=94.22  Aligned_cols=127  Identities=28%  Similarity=0.346  Sum_probs=99.9

Q ss_pred             cceEEeecCCcCcCCCccccCcccccEEEecCCCCCCchhhhccCCCcEEEecCCCCcccccc-ccCCCCccEEeccCCC
Q 037732          112 QVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGSDIKRLPVE-VGELTLLRLLDLRDCM  190 (350)
Q Consensus       112 ~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~l~~~~~~~lp~~-l~~l~~L~~L~l~~~~  190 (350)
                      .|.+.+.++|.+..+-.++.-++.|+.|+|++|++.....+..+++|++||+++|.++.+|.- ...|. |+.|.+++ +
T Consensus       165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrn-N  242 (1096)
T KOG1859|consen  165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRN-N  242 (1096)
T ss_pred             hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhh-heeeeecc-c
Confidence            455566666776667777888899999999999999988999999999999999999988863 33444 99999988 5


Q ss_pred             CCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCCC
Q 037732          191 ELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVN  248 (350)
Q Consensus       191 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  248 (350)
                      -+..+..  +.++.+|+.||++.|.+...      .-..-+..+..|+.|.+.+|.+.
T Consensus       243 ~l~tL~g--ie~LksL~~LDlsyNll~~h------seL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  243 ALTTLRG--IENLKSLYGLDLSYNLLSEH------SELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             HHHhhhh--HHhhhhhhccchhHhhhhcc------hhhhHHHHHHHHHHHhhcCCccc
Confidence            5565555  68999999999998877432      11233677788999999999864

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.18  E-value=2.5e-06  Score=51.23  Aligned_cols=37  Identities=30%  Similarity=0.438  Sum_probs=18.1

Q ss_pred             cccEEEecCCCCCC-chhhhccCCCcEEEecCCCCccc
Q 037732          135 NLQNLSLYNCKLLD-ITVIRDLKKLAVLCLRGSDIKRL  171 (350)
Q Consensus       135 ~L~~L~l~~~~l~~-~~~l~~l~~L~~L~l~~~~~~~l  171 (350)
                      +|++|++++|.+++ ++.++++++|++|++++|.++.+
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence            45555555555555 33355555555555555555443

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.18  E-value=7.8e-06  Score=73.36  Aligned_cols=34  Identities=15%  Similarity=0.092  Sum_probs=17.8

Q ss_pred             ccceEEEEeCCCcccchHHHHHHhcccceeeeccccc
Q 037732          277 IWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEE  313 (350)
Q Consensus       277 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l  313 (350)
                      ++|+.|.++++....+|..   ...+|+.|+++.+.+
T Consensus       156 sSLk~L~Is~c~~i~LP~~---LP~SLk~L~ls~n~~  189 (426)
T PRK15386        156 PSLKTLSLTGCSNIILPEK---LPESLQSITLHIEQK  189 (426)
T ss_pred             CcccEEEecCCCcccCccc---ccccCcEEEeccccc
Confidence            4566666665544444422   224666666665443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.07  E-value=7.5e-06  Score=68.21  Aligned_cols=136  Identities=16%  Similarity=0.163  Sum_probs=72.7

Q ss_pred             cCCcceEEeecCCcCcC-----CCccccCcccccEEEecCCCCCC-----c-------hhhhccCCCcEEEecCCCCc-c
Q 037732          109 RMIQVRVINFSYMNLLS-----LPSSLGLLSNLQNLSLYNCKLLD-----I-------TVIRDLKKLAVLCLRGSDIK-R  170 (350)
Q Consensus       109 ~l~~L~~L~l~~~~~~~-----lp~~l~~l~~L~~L~l~~~~l~~-----~-------~~l~~l~~L~~L~l~~~~~~-~  170 (350)
                      -+..++.++||+|.+..     +...+..-.+|+.-++++-....     +       +.+-++++|+..+++.|.+. .
T Consensus        28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~  107 (388)
T COG5238          28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE  107 (388)
T ss_pred             hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence            37788889999988763     44455556677777776543211     1       34455677777777777554 3


Q ss_pred             cccc----ccCCCCccEEeccCCCCCCccCcch-------------hCCCCCCcEEEcCCCCCCcchhhhccccccchhh
Q 037732          171 LPVE----VGELTLLRLLDLRDCMELEVIPPNI-------------LSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHE  233 (350)
Q Consensus       171 lp~~----l~~l~~L~~L~l~~~~~~~~~~~~~-------------l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~  233 (350)
                      .|+.    +.+-+.|.||.+++|. ++.+...-             ...-+.|+......|++...+.   ......+..
T Consensus       108 ~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~---~~~a~~l~s  183 (388)
T COG5238         108 FPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSK---ELSAALLES  183 (388)
T ss_pred             cchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcH---HHHHHHHHh
Confidence            3332    4455667777776643 22221110             1233455565555555533221   111122333


Q ss_pred             cCCCceeEEEecCCC
Q 037732          234 LKHLISLELQIQDVN  248 (350)
Q Consensus       234 l~~L~~L~l~~~~~~  248 (350)
                      ..+|+.+.+..|+++
T Consensus       184 h~~lk~vki~qNgIr  198 (388)
T COG5238         184 HENLKEVKIQQNGIR  198 (388)
T ss_pred             hcCceeEEeeecCcC
Confidence            345666666666553

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.02  E-value=2.7e-06  Score=82.40  Aligned_cols=103  Identities=22%  Similarity=0.296  Sum_probs=50.3

Q ss_pred             CCccEEEecccCCcc-ccccChHHHhcCCcceEEeecCCcCcC--CCccccCcccccEEEecCCCCCCchhhhccCCCcE
Q 037732           84 PQLELLFICADKESS-SLTIPNKFFERMIQVRVINFSYMNLLS--LPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAV  160 (350)
Q Consensus        84 ~~L~~L~l~~~~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~--lp~~l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~  160 (350)
                      .+|+.|++  ++... ....+..+..-+|.|+.|.+.+-.+..  ...-...+++|+.||++++.++....++++++|+.
T Consensus       122 ~nL~~LdI--~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDI--SGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCc--cccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHH
Confidence            35555555  22221 222333334445666666666544431  11222345566666666666555555566666666


Q ss_pred             EEecCCCCcccc--ccccCCCCccEEeccC
Q 037732          161 LCLRGSDIKRLP--VEVGELTLLRLLDLRD  188 (350)
Q Consensus       161 L~l~~~~~~~lp--~~l~~l~~L~~L~l~~  188 (350)
                      |.+.+-.+..-.  ..+.++++|++||+|.
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~  229 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISR  229 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccc
Confidence            555443333211  1345555566665555

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.98  E-value=4e-06  Score=81.20  Aligned_cols=106  Identities=25%  Similarity=0.213  Sum_probs=79.9

Q ss_pred             CCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCC---chhhhccCCC
Q 037732           82 ECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLD---ITVIRDLKKL  158 (350)
Q Consensus        82 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~---~~~l~~l~~L  158 (350)
                      -+|.|++|.+  .+......--...+.++++|+.||+++++++.+ ..++++++|+.|.+++=.+..   ...+.++.+|
T Consensus       146 ~LPsL~sL~i--~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L  222 (699)
T KOG3665|consen  146 MLPSLRSLVI--SGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKL  222 (699)
T ss_pred             hCcccceEEe--cCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCC
Confidence            5789999999  443333333345577899999999999999887 668999999999999887765   6788999999


Q ss_pred             cEEEecCCCCcccc---c----cccCCCCccEEeccCCC
Q 037732          159 AVLCLRGSDIKRLP---V----EVGELTLLRLLDLRDCM  190 (350)
Q Consensus       159 ~~L~l~~~~~~~lp---~----~l~~l~~L~~L~l~~~~  190 (350)
                      ++||++......-+   .    --..+|+|+.||.+++.
T Consensus       223 ~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd  261 (699)
T KOG3665|consen  223 RVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD  261 (699)
T ss_pred             CeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence            99999986443222   1    12246788888877743

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.97  E-value=1.2e-05  Score=64.03  Aligned_cols=103  Identities=22%  Similarity=0.272  Sum_probs=42.3

Q ss_pred             cEEEecCCCCCCchhhhccCCCcEEEecCCCCccccccccC-CCCccEEeccCCCC--CCccCcchhCCCCCCcEEEcCC
Q 037732          137 QNLSLYNCKLLDITVIRDLKKLAVLCLRGSDIKRLPVEVGE-LTLLRLLDLRDCME--LEVIPPNILSNLSHLEELYMGP  213 (350)
Q Consensus       137 ~~L~l~~~~l~~~~~l~~l~~L~~L~l~~~~~~~lp~~l~~-l~~L~~L~l~~~~~--~~~~~~~~l~~l~~L~~L~l~~  213 (350)
                      ..+|+++|.+...+.+..++.|.+|.+.+|.|..+...+.. +++|+.|.+.+|+.  ++.+.+  +..|+.|+.|.+-+
T Consensus        45 d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p--La~~p~L~~Ltll~  122 (233)
T KOG1644|consen   45 DAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP--LASCPKLEYLTLLG  122 (233)
T ss_pred             ceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch--hccCCccceeeecC
Confidence            34444444444444444444444444444444444333322 23444444444221  112222  34444555555444


Q ss_pred             CCCCcchhhhccccccchhhcCCCceeEEEec
Q 037732          214 RSFDKWEVEVEGVKNASLHELKHLISLELQIQ  245 (350)
Q Consensus       214 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  245 (350)
                      |+....    .+.-...+..+++|+.|+++.-
T Consensus       123 Npv~~k----~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  123 NPVEHK----KNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             Cchhcc----cCceeEEEEecCcceEeehhhh
Confidence            443221    1112233444555555555443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.96  E-value=2.2e-06  Score=63.97  Aligned_cols=87  Identities=21%  Similarity=0.277  Sum_probs=72.8

Q ss_pred             CccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCC-chhhhccCCCcEEEe
Q 037732           85 QLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLD-ITVIRDLKKLAVLCL  163 (350)
Q Consensus        85 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~l  163 (350)
                      +|...++   .++..+++|..+-..++.++.+++++|.+..+|..+..++.|+.|+++.|++.. |..+..+.++..|+.
T Consensus        54 el~~i~l---s~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds  130 (177)
T KOG4579|consen   54 ELTKISL---SDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDS  130 (177)
T ss_pred             eEEEEec---ccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcC
Confidence            5556677   556678888887777889999999999999999999999999999999999888 888888889999998


Q ss_pred             cCCCCcccccc
Q 037732          164 RGSDIKRLPVE  174 (350)
Q Consensus       164 ~~~~~~~lp~~  174 (350)
                      .+|....+|..
T Consensus       131 ~~na~~eid~d  141 (177)
T KOG4579|consen  131 PENARAEIDVD  141 (177)
T ss_pred             CCCccccCcHH
Confidence            88877777765

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.91  E-value=5e-05  Score=68.30  Aligned_cols=131  Identities=21%  Similarity=0.292  Sum_probs=82.3

Q ss_pred             cCCcceEEeecCCcCcCCCccccCcccccEEEecCCC-CCC-chhhhccCCCcEEEecCC-CCccccccccCCCCccEEe
Q 037732          109 RMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCK-LLD-ITVIRDLKKLAVLCLRGS-DIKRLPVEVGELTLLRLLD  185 (350)
Q Consensus       109 ~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~-l~~-~~~l~~l~~L~~L~l~~~-~~~~lp~~l~~l~~L~~L~  185 (350)
                      .+.+++.|++++|.++.+|. +  -.+|+.|.+++|. +.. |..+  ..+|++|++++| .+..+|..      |+.|+
T Consensus        50 ~~~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s------Le~L~  118 (426)
T PRK15386         50 EARASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES------VRSLE  118 (426)
T ss_pred             HhcCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc------cceEE
Confidence            47899999999998888883 2  2369999999875 444 4444  358999999988 77777754      55555


Q ss_pred             ccCC--CCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhc-CCCceeEEEecCCCCCCcccccCCccEE
Q 037732          186 LRDC--MELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHEL-KHLISLELQIQDVNTFPRGLFLEKLETF  262 (350)
Q Consensus       186 l~~~--~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~l~~~~~~~~L~~L  262 (350)
                      +..+  ..+..+|.       +|+.|.+.+++...     ....+.   .+ ++|+.|.+++|....+|..+ ..+|++|
T Consensus       119 L~~n~~~~L~~LPs-------sLk~L~I~~~n~~~-----~~~lp~---~LPsSLk~L~Is~c~~i~LP~~L-P~SLk~L  182 (426)
T PRK15386        119 IKGSATDSIKNVPN-------GLTSLSINSYNPEN-----QARIDN---LISPSLKTLSLTGCSNIILPEKL-PESLQSI  182 (426)
T ss_pred             eCCCCCcccccCcc-------hHhheecccccccc-----cccccc---ccCCcccEEEecCCCcccCcccc-cccCcEE
Confidence            5442  22344444       36677765332100     011111   12 57999999888766656543 3567777


Q ss_pred             EEEE
Q 037732          263 KILI  266 (350)
Q Consensus       263 ~l~~  266 (350)
                      .+..
T Consensus       183 ~ls~  186 (426)
T PRK15386        183 TLHI  186 (426)
T ss_pred             Eecc
Confidence            7643

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.88  E-value=2.9e-06  Score=71.56  Aligned_cols=82  Identities=22%  Similarity=0.290  Sum_probs=45.0

Q ss_pred             HhcCCcceEEeecCCcCcC---CCccccCcccccEEEecCCCCCC-chhh-hccCCCcEEEecCCCCc--cccccccCCC
Q 037732          107 FERMIQVRVINFSYMNLLS---LPSSLGLLSNLQNLSLYNCKLLD-ITVI-RDLKKLAVLCLRGSDIK--RLPVEVGELT  179 (350)
Q Consensus       107 ~~~l~~L~~L~l~~~~~~~---lp~~l~~l~~L~~L~l~~~~l~~-~~~l-~~l~~L~~L~l~~~~~~--~lp~~l~~l~  179 (350)
                      ...+..++.++|.+|.++.   +..-+.+++.|++|+++.|++.. +..+ ....+|++|.+.++.+.  .....+..++
T Consensus        67 ~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP  146 (418)
T KOG2982|consen   67 GSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLP  146 (418)
T ss_pred             HHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcch
Confidence            3445666666666666652   33334556666666666666655 3444 24556666666555443  3333444555


Q ss_pred             CccEEeccC
Q 037732          180 LLRLLDLRD  188 (350)
Q Consensus       180 ~L~~L~l~~  188 (350)
                      .++.|+++.
T Consensus       147 ~vtelHmS~  155 (418)
T KOG2982|consen  147 KVTELHMSD  155 (418)
T ss_pred             hhhhhhhcc
Confidence            555555554

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.85  E-value=6.9e-05  Score=62.63  Aligned_cols=209  Identities=15%  Similarity=0.095  Sum_probs=128.9

Q ss_pred             cccCcccccEEEecCCCCCC--c----hhhhccCCCcEEEecCCCCc----ccc-------ccccCCCCccEEeccCCCC
Q 037732          129 SLGLLSNLQNLSLYNCKLLD--I----TVIRDLKKLAVLCLRGSDIK----RLP-------VEVGELTLLRLLDLRDCME  191 (350)
Q Consensus       129 ~l~~l~~L~~L~l~~~~l~~--~----~~l~~l~~L~~L~l~~~~~~----~lp-------~~l~~l~~L~~L~l~~~~~  191 (350)
                      .+..+..+..+++|+|.+..  .    ..+.+-.+|+..+++.-...    .++       +.+.+|++|+..+++.|..
T Consensus        25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf  104 (388)
T COG5238          25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF  104 (388)
T ss_pred             HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence            34557788999999998866  3    34455567877777653111    232       3466899999999999766


Q ss_pred             CCccCcc---hhCCCCCCcEEEcCCCCCCcchhhhccccc---------cchhhcCCCceeEEEecCCCCCCccc-----
Q 037732          192 LEVIPPN---ILSNLSHLEELYMGPRSFDKWEVEVEGVKN---------ASLHELKHLISLELQIQDVNTFPRGL-----  254 (350)
Q Consensus       192 ~~~~~~~---~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~---------~~l~~l~~L~~L~l~~~~~~~l~~~~-----  254 (350)
                      -...|+.   .+++-+.|.+|.+.+|......+   +.+.         .-..+.+.|+.+....|.+...+...     
T Consensus       105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG---~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l  181 (388)
T COG5238         105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAG---GRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALL  181 (388)
T ss_pred             CcccchHHHHHHhcCCCceeEEeecCCCCccch---hHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHH
Confidence            5555543   35677889999999887754433   1222         12334577888888888876655433     


Q ss_pred             -ccCCccEEEEEEcCcccc---------cccCccceEEEEeCCCccc-----chHHHHHHhcccceeeecccccc--chh
Q 037732          255 -FLEKLETFKILIGGVWGW---------EYADIWCREFKIDLDSKIR-----LKDGLILKLEGIEDLWLSYLEEQ--DVN  317 (350)
Q Consensus       255 -~~~~L~~L~l~~~~~~~~---------~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~~L~~L~L~~n~l~--~~~  317 (350)
                       +..+|+.+.+..+++.+-         +..+.+|+.|++..|....     +..++..+ +.|+.|.+..|-++  +.+
T Consensus       182 ~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W-~~lrEL~lnDClls~~G~~  260 (388)
T COG5238         182 ESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEW-NLLRELRLNDCLLSNEGVK  260 (388)
T ss_pred             HhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhccc-chhhhccccchhhccccHH
Confidence             235677777766665331         3456677777777653222     22233333 55677777755443  333


Q ss_pred             hhhhhhcccCcCcceEEEEeCccc
Q 037732          318 YFVNELVKVGPSQLKHLYIRGSHL  341 (350)
Q Consensus       318 ~~~~~l~~~~~~~L~~L~l~~~~~  341 (350)
                      .+...+.+..+|+|..|....|.+
T Consensus       261 ~v~~~f~e~~~p~l~~L~~~Yne~  284 (388)
T COG5238         261 SVLRRFNEKFVPNLMPLPGDYNER  284 (388)
T ss_pred             HHHHHhhhhcCCCccccccchhhh
Confidence            444445445567777777776654

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.64  E-value=5.2e-06  Score=61.99  Aligned_cols=107  Identities=20%  Similarity=0.218  Sum_probs=67.9

Q ss_pred             CcceEEeecCCcCcCCCc---cccCcccccEEEecCCCCCC-chhhhcc-CCCcEEEecCCCCccccccccCCCCccEEe
Q 037732          111 IQVRVINFSYMNLLSLPS---SLGLLSNLQNLSLYNCKLLD-ITVIRDL-KKLAVLCLRGSDIKRLPVEVGELTLLRLLD  185 (350)
Q Consensus       111 ~~L~~L~l~~~~~~~lp~---~l~~l~~L~~L~l~~~~l~~-~~~l~~l-~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~  185 (350)
                      ..+..++|++|.+-.+++   .+.+..+|...++++|.+.. |+.+... +-...+++.+|.++++|.++..++.|+.|+
T Consensus        27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lN  106 (177)
T KOG4579|consen   27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLN  106 (177)
T ss_pred             HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcc
Confidence            445567777776654333   34555667777777777776 5555443 367777777777777777777777777777


Q ss_pred             ccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcc
Q 037732          186 LRDCMELEVIPPNILSNLSHLEELYMGPRSFDKW  219 (350)
Q Consensus       186 l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  219 (350)
                      ++. +.+...|.- +..+.++..|+..++.....
T Consensus       107 l~~-N~l~~~p~v-i~~L~~l~~Lds~~na~~ei  138 (177)
T KOG4579|consen  107 LRF-NPLNAEPRV-IAPLIKLDMLDSPENARAEI  138 (177)
T ss_pred             ccc-CccccchHH-HHHHHhHHHhcCCCCccccC
Confidence            776 444445544 34466666666665555433

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.40  E-value=0.00029  Score=56.40  Aligned_cols=82  Identities=21%  Similarity=0.325  Sum_probs=52.8

Q ss_pred             HhcCCcceEEeecCCcCcCCCcccc-CcccccEEEecCCCCCC---chhhhccCCCcEEEecCCCCccccc----cccCC
Q 037732          107 FERMIQVRVINFSYMNLLSLPSSLG-LLSNLQNLSLYNCKLLD---ITVIRDLKKLAVLCLRGSDIKRLPV----EVGEL  178 (350)
Q Consensus       107 ~~~l~~L~~L~l~~~~~~~lp~~l~-~l~~L~~L~l~~~~l~~---~~~l~~l~~L~~L~l~~~~~~~lp~----~l~~l  178 (350)
                      |..++.|..|.+.+|.|+.+.+.+. .+++|..|.+.+|++..   +..+..+++|++|.+-+|.+..-..    .+.++
T Consensus        60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~kl  139 (233)
T KOG1644|consen   60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKL  139 (233)
T ss_pred             CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEec
Confidence            3456667777777777776544443 34567777777776554   4556667777777777776653322    36677


Q ss_pred             CCccEEeccC
Q 037732          179 TLLRLLDLRD  188 (350)
Q Consensus       179 ~~L~~L~l~~  188 (350)
                      ++|++||..+
T Consensus       140 p~l~~LDF~k  149 (233)
T KOG1644|consen  140 PSLRTLDFQK  149 (233)
T ss_pred             CcceEeehhh
Confidence            7888887755

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.40  E-value=9.9e-06  Score=67.74  Aligned_cols=79  Identities=25%  Similarity=0.222  Sum_probs=34.7

Q ss_pred             CcccccEEEecCCCCCCchhhhccCCCcEEEecCCCCccccc--cccCCCCccEEeccCCCCCCccCc----chhCCCCC
Q 037732          132 LLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGSDIKRLPV--EVGELTLLRLLDLRDCMELEVIPP----NILSNLSH  205 (350)
Q Consensus       132 ~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~l~~~~~~~lp~--~l~~l~~L~~L~l~~~~~~~~~~~----~~l~~l~~  205 (350)
                      +++.|++|.|+-|+++.+..+..+++|+.|.+..|.|..+.+  -+.++++|+.|.+..|...+..+.    .++.-+++
T Consensus        39 kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPn  118 (388)
T KOG2123|consen   39 KMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPN  118 (388)
T ss_pred             hcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHccc
Confidence            344444444444444444444444444444444444443332  234445555554444333332221    23344455


Q ss_pred             CcEEE
Q 037732          206 LEELY  210 (350)
Q Consensus       206 L~~L~  210 (350)
                      |+.||
T Consensus       119 LkKLD  123 (388)
T KOG2123|consen  119 LKKLD  123 (388)
T ss_pred             chhcc
Confidence            55543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.30  E-value=1.3e-05  Score=66.98  Aligned_cols=106  Identities=26%  Similarity=0.352  Sum_probs=80.0

Q ss_pred             cccccEEEecCCCCCCchhhhccCCCcEEEecCCCCccccccccCCCCccEEeccCCCCCCccCc-chhCCCCCCcEEEc
Q 037732          133 LSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPP-NILSNLSHLEELYM  211 (350)
Q Consensus       133 l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l  211 (350)
                      +.+.+.|+..+|.+.++....+|+.|++|.++-|+|+.+. .+..|++|+.|.+.. +.+..+.. .-+.++++|+.|.+
T Consensus        18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRk-N~I~sldEL~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRK-NCIESLDELEYLKNLPSLRTLWL   95 (388)
T ss_pred             HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHh-cccccHHHHHHHhcCchhhhHhh
Confidence            5677888999999999888889999999999999999885 678999999999988 55554443 22678999999999


Q ss_pred             CCCCCCcchhhhccccccchhhcCCCceeEE
Q 037732          212 GPRSFDKWEVEVEGVKNASLHELKHLISLEL  242 (350)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l  242 (350)
                      ..|+...-.+  ...-...+.-+++|++|+=
T Consensus        96 ~ENPCc~~ag--~nYR~~VLR~LPnLkKLDn  124 (388)
T KOG2123|consen   96 DENPCCGEAG--QNYRRKVLRVLPNLKKLDN  124 (388)
T ss_pred             ccCCcccccc--hhHHHHHHHHcccchhccC
Confidence            9888733221  1122234666777877753

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.18  E-value=0.00017  Score=59.98  Aligned_cols=80  Identities=26%  Similarity=0.429  Sum_probs=36.6

Q ss_pred             cCCcceEEeecCCcCcCCCccccCcccccEEEecCC--CCCC--chhhhccCCCcEEEecCCCCcccc--ccccCCCCcc
Q 037732          109 RMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNC--KLLD--ITVIRDLKKLAVLCLRGSDIKRLP--VEVGELTLLR  182 (350)
Q Consensus       109 ~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~--~l~~--~~~l~~l~~L~~L~l~~~~~~~lp--~~l~~l~~L~  182 (350)
                      .+..|+.+.+.++.++++- .+..+++|++|+++.|  .+..  .....++++|+++++++|++..+.  ..+..+.+|.
T Consensus        41 ~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~  119 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK  119 (260)
T ss_pred             cccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence            3444555555544443321 2344556666666666  2222  122233466666666665544211  1233444455


Q ss_pred             EEeccCC
Q 037732          183 LLDLRDC  189 (350)
Q Consensus       183 ~L~l~~~  189 (350)
                      .|++.+|
T Consensus       120 ~Ldl~n~  126 (260)
T KOG2739|consen  120 SLDLFNC  126 (260)
T ss_pred             hhhcccC
Confidence            5555444

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.15  E-value=7.9e-06  Score=71.96  Aligned_cols=228  Identities=16%  Similarity=0.075  Sum_probs=108.2

Q ss_pred             hcCCcceEEeecCCc-CcC-CCccc-cCcccccEEEecCCC-CCC--ch-hhhccCCCcEEEecCC-CCc--cccccccC
Q 037732          108 ERMIQVRVINFSYMN-LLS-LPSSL-GLLSNLQNLSLYNCK-LLD--IT-VIRDLKKLAVLCLRGS-DIK--RLPVEVGE  177 (350)
Q Consensus       108 ~~l~~L~~L~l~~~~-~~~-lp~~l-~~l~~L~~L~l~~~~-l~~--~~-~l~~l~~L~~L~l~~~-~~~--~lp~~l~~  177 (350)
                      ..+++++.|.+.+|. ++. .-..+ ..+.+|+++++..|. +++  +. ....+++|+++++++| .++  .+..-..+
T Consensus       161 ~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG  240 (483)
T KOG4341|consen  161 SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRG  240 (483)
T ss_pred             hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhcc
Confidence            455666666665553 221 11112 234556666666543 333  22 2234556666666655 333  12222333


Q ss_pred             CCCccEEeccCCCCCCc--cCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCC-CCCC-cc
Q 037732          178 LTLLRLLDLRDCMELEV--IPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDV-NTFP-RG  253 (350)
Q Consensus       178 l~~L~~L~l~~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~l~-~~  253 (350)
                      +..++.+...+|...+.  +-.. -+.+..+..+++..|...+..     .+-..-..+..|+.++.+++.. .+.+ ..
T Consensus       241 ~~~l~~~~~kGC~e~~le~l~~~-~~~~~~i~~lnl~~c~~lTD~-----~~~~i~~~c~~lq~l~~s~~t~~~d~~l~a  314 (483)
T KOG4341|consen  241 CKELEKLSLKGCLELELEALLKA-AAYCLEILKLNLQHCNQLTDE-----DLWLIACGCHALQVLCYSSCTDITDEVLWA  314 (483)
T ss_pred             chhhhhhhhcccccccHHHHHHH-hccChHhhccchhhhccccch-----HHHHHhhhhhHhhhhcccCCCCCchHHHHH
Confidence            44444444444322210  0000 112223333333333221111     1111123345667777766653 1111 11


Q ss_pred             c--ccCCccEEEEEEcCccc------ccccCccceEEEEeCCCcccch--HHHHHHhcccceeeeccccc-cchhhhhhh
Q 037732          254 L--FLEKLETFKILIGGVWG------WEYADIWCREFKIDLDSKIRLK--DGLILKLEGIEDLWLSYLEE-QDVNYFVNE  322 (350)
Q Consensus       254 ~--~~~~L~~L~l~~~~~~~------~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~L~~n~l-~~~~~~~~~  322 (350)
                      +  ...+|+.+.+..+....      .-.+++.|+.+++.........  ..+...++.|+.|.|+++.. ++. ++ ..
T Consensus       315 Lg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~-gi-~~  392 (483)
T KOG4341|consen  315 LGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDE-GI-RH  392 (483)
T ss_pred             HhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhh-hh-hh
Confidence            1  35778888886655322      2336778888888774433322  22445688999999995432 221 11 11


Q ss_pred             h--cccCcCcceEEEEeCcccee
Q 037732          323 L--VKVGPSQLKHLYIRGSHLTL  343 (350)
Q Consensus       323 l--~~~~~~~L~~L~l~~~~~~~  343 (350)
                      +  +..+...|..+.+++||.+.
T Consensus       393 l~~~~c~~~~l~~lEL~n~p~i~  415 (483)
T KOG4341|consen  393 LSSSSCSLEGLEVLELDNCPLIT  415 (483)
T ss_pred             hhhccccccccceeeecCCCCch
Confidence            1  12567889999999998654

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=96.92  E-value=2.7e-05  Score=68.76  Aligned_cols=224  Identities=17%  Similarity=0.113  Sum_probs=132.5

Q ss_pred             cceEEeecCCcCc---CCCccccCcccccEEEecCCC-CCC--c-hhhhccCCCcEEEecCC-CCcc--ccccccCCCCc
Q 037732          112 QVRVINFSYMNLL---SLPSSLGLLSNLQNLSLYNCK-LLD--I-TVIRDLKKLAVLCLRGS-DIKR--LPVEVGELTLL  181 (350)
Q Consensus       112 ~L~~L~l~~~~~~---~lp~~l~~l~~L~~L~l~~~~-l~~--~-~~l~~l~~L~~L~l~~~-~~~~--lp~~l~~l~~L  181 (350)
                      -|+.|.++++.-.   .+-..-..++++++|++.+|. +++  . ..-..+.+|+++++..| .++.  +-.....+++|
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL  218 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL  218 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence            5778888887533   233334678888899888885 444  2 33345788999998886 5552  22234578888


Q ss_pred             cEEeccCCCCCCc--cCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecC-CCCCCccc---c
Q 037732          182 RLLDLRDCMELEV--IPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQD-VNTFPRGL---F  255 (350)
Q Consensus       182 ~~L~l~~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~l~~~~---~  255 (350)
                      .+++++.|..+..  +.. ...++..++.+...||.-.....     +...-..+..+.++++..|. +.+..-+.   .
T Consensus       219 ~~lNlSwc~qi~~~gv~~-~~rG~~~l~~~~~kGC~e~~le~-----l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~  292 (483)
T KOG4341|consen  219 KYLNLSWCPQISGNGVQA-LQRGCKELEKLSLKGCLELELEA-----LLKAAAYCLEILKLNLQHCNQLTDEDLWLIACG  292 (483)
T ss_pred             HHhhhccCchhhcCcchH-HhccchhhhhhhhcccccccHHH-----HHHHhccChHhhccchhhhccccchHHHHHhhh
Confidence            8898888765443  112 24556667777666543322111     11111223335555554553 22211111   3


Q ss_pred             cCCccEEEEEEcCc------ccccccCccceEEEEeCCCccc--chHHHHHHhcccceeeeccccccchhhhhhhhcccC
Q 037732          256 LEKLETFKILIGGV------WGWEYADIWCREFKIDLDSKIR--LKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVG  327 (350)
Q Consensus       256 ~~~L~~L~l~~~~~------~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~  327 (350)
                      +.+|+.|....+..      ++.-..+++|+.+.++++.-..  --..+.+.++.|+.+++....+.....+. .+. ..
T Consensus       293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~-sls-~~  370 (483)
T KOG4341|consen  293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLA-SLS-RN  370 (483)
T ss_pred             hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHh-hhc-cC
Confidence            56778887765542      2234578999999999843222  11236677899999999976543221122 222 57


Q ss_pred             cCcceEEEEeCcccee
Q 037732          328 PSQLKHLYIRGSHLTL  343 (350)
Q Consensus       328 ~~~L~~L~l~~~~~~~  343 (350)
                      +|.||.|.+++|...+
T Consensus       371 C~~lr~lslshce~it  386 (483)
T KOG4341|consen  371 CPRLRVLSLSHCELIT  386 (483)
T ss_pred             CchhccCChhhhhhhh
Confidence            8999999999987544

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.74  E-value=0.00061  Score=56.76  Aligned_cols=82  Identities=28%  Similarity=0.318  Sum_probs=36.7

Q ss_pred             cccccEEEecCCCCCCchhhhccCCCcEEEecCC--CCc-cccccccCCCCccEEeccCCCC--CCccCcchhCCCCCCc
Q 037732          133 LSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGS--DIK-RLPVEVGELTLLRLLDLRDCME--LEVIPPNILSNLSHLE  207 (350)
Q Consensus       133 l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~l~~~--~~~-~lp~~l~~l~~L~~L~l~~~~~--~~~~~~~~l~~l~~L~  207 (350)
                      +..|+.|.+.++.++....+-.+++|++|.++.|  ++. .++....++++|+++++++|..  ++.+++  +..+.+|.
T Consensus        42 ~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p--l~~l~nL~  119 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP--LKELENLK  119 (260)
T ss_pred             ccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch--hhhhcchh
Confidence            3444444444444444444444555555555555  222 3333334445555555555321  122333  34444455


Q ss_pred             EEEcCCCCC
Q 037732          208 ELYMGPRSF  216 (350)
Q Consensus       208 ~L~l~~~~~  216 (350)
                      .|++..|..
T Consensus       120 ~Ldl~n~~~  128 (260)
T KOG2739|consen  120 SLDLFNCSV  128 (260)
T ss_pred             hhhcccCCc
Confidence            555554443

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=96.44  E-value=0.0016  Score=30.12  Aligned_cols=17  Identities=29%  Similarity=0.436  Sum_probs=9.6

Q ss_pred             CcceEEEEeCccceecc
Q 037732          329 SQLKHLYIRGSHLTLNP  345 (350)
Q Consensus       329 ~~L~~L~l~~~~~~~~p  345 (350)
                      ++|+.|+|++|+++.+|
T Consensus         1 ~~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    1 PNLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             TT-SEEEETSS--SSE-
T ss_pred             CccCEEECCCCCCCCCc
Confidence            46777788877777766

...

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.33  E-value=0.00076  Score=63.52  Aligned_cols=14  Identities=0%  Similarity=-0.149  Sum_probs=7.8

Q ss_pred             cccCccceEEEEeC
Q 037732          273 EYADIWCREFKIDL  286 (350)
Q Consensus       273 ~~~~~~L~~L~l~~  286 (350)
                      ...++.++.+.+..
T Consensus       358 ~~~~~~l~~~~l~~  371 (482)
T KOG1947|consen  358 LRSCPKLTDLSLSY  371 (482)
T ss_pred             HhcCCCcchhhhhh
Confidence            34555566655555

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.27  E-value=0.018  Score=43.45  Aligned_cols=100  Identities=17%  Similarity=0.267  Sum_probs=33.3

Q ss_pred             HhcCCcceEEeecCCcCcCCCc-cccCcccccEEEecCCCCCC--chhhhccCCCcEEEecCCCCccccc-cccCCCCcc
Q 037732          107 FERMIQVRVINFSYMNLLSLPS-SLGLLSNLQNLSLYNCKLLD--ITVIRDLKKLAVLCLRGSDIKRLPV-EVGELTLLR  182 (350)
Q Consensus       107 ~~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~  182 (350)
                      |.++.+|+.+.+.. .+..++. .|..+.+|+.+.+..+ +..  -..+..+.+++.+.+.. .+..++. .+..+++++
T Consensus         8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~   84 (129)
T PF13306_consen    8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK   84 (129)
T ss_dssp             TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred             HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence            33444444444442 2222222 2344444555544442 222  12334444455555533 2333332 233355555


Q ss_pred             EEeccCCCCCCccCcchhCCCCCCcEEEcC
Q 037732          183 LLDLRDCMELEVIPPNILSNLSHLEELYMG  212 (350)
Q Consensus       183 ~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~  212 (350)
                      .+.+.. + +..++...+.++ +|+.+.+.
T Consensus        85 ~i~~~~-~-~~~i~~~~f~~~-~l~~i~~~  111 (129)
T PF13306_consen   85 NIDIPS-N-ITEIGSSSFSNC-NLKEINIP  111 (129)
T ss_dssp             EEEETT-T--BEEHTTTTTT--T--EEE-T
T ss_pred             ccccCc-c-ccEEchhhhcCC-CceEEEEC
Confidence            555533 1 333333334444 55555544

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.07  E-value=0.025  Score=42.72  Aligned_cols=117  Identities=17%  Similarity=0.283  Sum_probs=62.2

Q ss_pred             cCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCc-cccCcccccEEEecCCCCCC--chhhhccC
Q 037732           80 VVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPS-SLGLLSNLQNLSLYNCKLLD--ITVIRDLK  156 (350)
Q Consensus        80 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~l~~--~~~l~~l~  156 (350)
                      +.++++|+.+.+  . . ....++...|..+.+++.+.+..+ +..++. .|..++.++.+.+.. .+..  ...+..+.
T Consensus         8 F~~~~~l~~i~~--~-~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~   81 (129)
T PF13306_consen    8 FYNCSNLESITF--P-N-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT   81 (129)
T ss_dssp             TTT-TT--EEEE--T-S-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred             HhCCCCCCEEEE--C-C-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccc
Confidence            346678888888  3 2 456677777888889999999875 555444 567777899999976 4333  35667789


Q ss_pred             CCcEEEecCCCCccccc-cccCCCCccEEeccCCCCCCccCcchhCCCCCC
Q 037732          157 KLAVLCLRGSDIKRLPV-EVGELTLLRLLDLRDCMELEVIPPNILSNLSHL  206 (350)
Q Consensus       157 ~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L  206 (350)
                      +|+.+.+..+ +..++. .+.++ +++.+.+..  .+..++...+.++++|
T Consensus        82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~--~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS--NITKIEENAFKNCTKL  128 (129)
T ss_dssp             TECEEEETTT--BEEHTTTTTT--T--EEE-TT--B-SS----GGG-----
T ss_pred             cccccccCcc-ccEEchhhhcCC-CceEEEECC--CccEECCccccccccC
Confidence            9999999765 666655 45666 888887754  4455565556666655

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.90  E-value=0.0036  Score=31.16  Aligned_cols=19  Identities=26%  Similarity=0.527  Sum_probs=10.8

Q ss_pred             CcEEEecCCCCcccccccc
Q 037732          158 LAVLCLRGSDIKRLPVEVG  176 (350)
Q Consensus       158 L~~L~l~~~~~~~lp~~l~  176 (350)
                      |++|++++|+++.+|.+++
T Consensus         2 L~~Ldls~n~l~~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEESEEGTTTT
T ss_pred             ccEEECCCCcCEeCChhhc
Confidence            5566666665555555443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.57  E-value=0.0084  Score=29.80  Aligned_cols=19  Identities=32%  Similarity=0.420  Sum_probs=15.6

Q ss_pred             cceEEEEeCccceeccCCC
Q 037732          330 QLKHLYIRGSHLTLNPAES  348 (350)
Q Consensus       330 ~L~~L~l~~~~~~~~p~~~  348 (350)
                      +|++|++++|.++.+|+..
T Consensus         1 ~L~~Ldls~n~l~~ip~~~   19 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSF   19 (22)
T ss_dssp             TESEEEETSSEESEEGTTT
T ss_pred             CccEEECCCCcCEeCChhh
Confidence            5788999999999888763

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>smart00370 LRR Leucine-rich repeats, outliers

Probab=93.16  E-value=0.04  Score=28.56  Aligned_cols=19  Identities=21%  Similarity=0.387  Sum_probs=12.7

Q ss_pred             CcceEEEEeCccceeccCC
Q 037732          329 SQLKHLYIRGSHLTLNPAE  347 (350)
Q Consensus       329 ~~L~~L~l~~~~~~~~p~~  347 (350)
                      ++|+.|+|++|.++.+|++
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            5667777777777776654

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=93.16  E-value=0.04  Score=28.56  Aligned_cols=19  Identities=21%  Similarity=0.387  Sum_probs=12.7

Q ss_pred             CcceEEEEeCccceeccCC
Q 037732          329 SQLKHLYIRGSHLTLNPAE  347 (350)
Q Consensus       329 ~~L~~L~l~~~~~~~~p~~  347 (350)
                      ++|+.|+|++|.++.+|++
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            5667777777777776654

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=92.68  E-value=0.046  Score=51.46  Aligned_cols=105  Identities=19%  Similarity=0.077  Sum_probs=46.6

Q ss_pred             CCCccEEeccCCCCCCc--cCcchhCCCCCCcEEEcCCC-CCCcchhhhccccccchhhcCCCceeEEEecC-CCCCCcc
Q 037732          178 LTLLRLLDLRDCMELEV--IPPNILSNLSHLEELYMGPR-SFDKWEVEVEGVKNASLHELKHLISLELQIQD-VNTFPRG  253 (350)
Q Consensus       178 l~~L~~L~l~~~~~~~~--~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~l~~~  253 (350)
                      ++.|+.+.+.+|..+..  +.+. ...++.|++|+++++ .......   .........+++|+.++++.+. +.+..-.
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~~~~~L~~l~l~~~~~isd~~l~  262 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDAL-ALKCPNLEELDLSGCCLLITLSP---LLLLLLLSICRKLKSLDLSGCGLVTDIGLS  262 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHH-HhhCchhheecccCcccccccch---hHhhhhhhhcCCcCccchhhhhccCchhHH
Confidence            56666666665544443  2222 455666666666652 1111100   0111233444566666666655 3321111


Q ss_pred             c---ccCCccEEEEEEcCc------ccccccCccceEEEEeC
Q 037732          254 L---FLEKLETFKILIGGV------WGWEYADIWCREFKIDL  286 (350)
Q Consensus       254 ~---~~~~L~~L~l~~~~~------~~~~~~~~~L~~L~l~~  286 (350)
                      .   .+++|+.|.+..+..      ......++.|+.|+++.
T Consensus       263 ~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~  304 (482)
T KOG1947|consen  263 ALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSG  304 (482)
T ss_pred             HHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeec
Confidence            1   244555555322221      11234555566666665

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=91.07  E-value=0.01  Score=48.95  Aligned_cols=86  Identities=8%  Similarity=0.070  Sum_probs=50.5

Q ss_pred             ccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCC-chhhhccCC
Q 037732           79 EVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLD-ITVIRDLKK  157 (350)
Q Consensus        79 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~-~~~l~~l~~  157 (350)
                      ++..+.....|++  +.+. ....... |+-+..+..|+++.+.+..+|+.++.+..++.+++..|..+. |.+.++.++
T Consensus        37 ei~~~kr~tvld~--~s~r-~vn~~~n-~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~  112 (326)
T KOG0473|consen   37 EIASFKRVTVLDL--SSNR-LVNLGKN-FSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPH  112 (326)
T ss_pred             hhhccceeeeehh--hhhH-HHhhccc-hHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCC
Confidence            3445566666666  3322 2222222 233455556666666666677766666667777766666666 666677777


Q ss_pred             CcEEEecCCCC
Q 037732          158 LAVLCLRGSDI  168 (350)
Q Consensus       158 L~~L~l~~~~~  168 (350)
                      +++++..+|.+
T Consensus       113 ~k~~e~k~~~~  123 (326)
T KOG0473|consen  113 PKKNEQKKTEF  123 (326)
T ss_pred             cchhhhccCcc
Confidence            77777666644

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.78  E-value=0.058  Score=43.57  Aligned_cols=32  Identities=25%  Similarity=0.363  Sum_probs=12.7

Q ss_pred             ceEEeecCCcCcC-CCccccCcccccEEEecCC
Q 037732          113 VRVINFSYMNLLS-LPSSLGLLSNLQNLSLYNC  144 (350)
Q Consensus       113 L~~L~l~~~~~~~-lp~~l~~l~~L~~L~l~~~  144 (350)
                      ++.++-+++.+.. --+.+..+..++.|.+.+|
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~c  135 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANC  135 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccc
Confidence            3344444444331 1122334444444444444

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=90.62  E-value=0.22  Score=25.65  Aligned_cols=19  Identities=26%  Similarity=0.356  Sum_probs=12.4

Q ss_pred             CCCcEEEecCCCCcccccc
Q 037732          156 KKLAVLCLRGSDIKRLPVE  174 (350)
Q Consensus       156 ~~L~~L~l~~~~~~~lp~~  174 (350)
                      ++|++|++++|.++.+|..
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            4566677777666666654

>smart00370 LRR Leucine-rich repeats, outliers

Probab=90.62  E-value=0.22  Score=25.65  Aligned_cols=19  Identities=26%  Similarity=0.356  Sum_probs=12.4

Q ss_pred             CCCcEEEecCCCCcccccc
Q 037732          156 KKLAVLCLRGSDIKRLPVE  174 (350)
Q Consensus       156 ~~L~~L~l~~~~~~~lp~~  174 (350)
                      ++|++|++++|.++.+|..
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            4566677777666666654

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=88.82  E-value=0.22  Score=25.71  Aligned_cols=18  Identities=33%  Similarity=0.468  Sum_probs=12.8

Q ss_pred             CcceEEEEeCccceeccC
Q 037732          329 SQLKHLYIRGSHLTLNPA  346 (350)
Q Consensus       329 ~~L~~L~l~~~~~~~~p~  346 (350)
                      ++|+.|++++|+++.+|+
T Consensus         2 ~~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLTSLPE   19 (26)
T ss_pred             cccceeecCCCccccCcc
Confidence            456777777777777775

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.72  E-value=0.084  Score=42.65  Aligned_cols=79  Identities=20%  Similarity=0.250  Sum_probs=42.5

Q ss_pred             ccccEEEecCCCCCC--chhhhccCCCcEEEecCC-CCcc--ccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcE
Q 037732          134 SNLQNLSLYNCKLLD--ITVIRDLKKLAVLCLRGS-DIKR--LPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEE  208 (350)
Q Consensus       134 ~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~l~~~-~~~~--lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~  208 (350)
                      ..++..|-+++.+..  .+.+..++.++.|.+.+| .+..  +..--+-.++|+.|++++|..+++..-..+.++++|+.
T Consensus       101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~  180 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR  180 (221)
T ss_pred             ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence            456677777776554  577777777777776666 3321  11111123566666666655554433322445555555


Q ss_pred             EEcC
Q 037732          209 LYMG  212 (350)
Q Consensus       209 L~l~  212 (350)
                      |.+.
T Consensus       181 L~l~  184 (221)
T KOG3864|consen  181 LHLY  184 (221)
T ss_pred             HHhc
Confidence            5544

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=87.67  E-value=0.018  Score=47.47  Aligned_cols=83  Identities=12%  Similarity=0.127  Sum_probs=70.7

Q ss_pred             hcCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCC-chhhhccCCCcEEEecCCCCccccccccCCCCccEEec
Q 037732          108 ERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLD-ITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDL  186 (350)
Q Consensus       108 ~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l  186 (350)
                      ..+...++||++.+.+..+...|+.+..|..|+++.+.+.- |.+.++...+..++...|+.+..|.+.+..+.++.++.
T Consensus        39 ~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~  118 (326)
T KOG0473|consen   39 ASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQ  118 (326)
T ss_pred             hccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhh
Confidence            46778889999998888888888888899999999888877 78888888888889888888899999999999998888


Q ss_pred             cCCC
Q 037732          187 RDCM  190 (350)
Q Consensus       187 ~~~~  190 (350)
                      .++.
T Consensus       119 k~~~  122 (326)
T KOG0473|consen  119 KKTE  122 (326)
T ss_pred             ccCc
Confidence            7643

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=84.18  E-value=0.46  Score=24.60  Aligned_cols=19  Identities=21%  Similarity=0.261  Sum_probs=14.1

Q ss_pred             cccceeeeccccccchhhh
Q 037732          301 EGIEDLWLSYLEEQDVNYF  319 (350)
Q Consensus       301 ~~L~~L~L~~n~l~~~~~~  319 (350)
                      .+|+.|+++.|.++.++++
T Consensus         2 ~~L~~L~L~~NkI~~IEnL   20 (26)
T smart00365        2 TNLEELDLSQNKIKKIENL   20 (26)
T ss_pred             CccCEEECCCCccceecCc
Confidence            5788888888888775443

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=82.66  E-value=0.58  Score=23.48  Aligned_cols=15  Identities=20%  Similarity=0.304  Sum_probs=7.9

Q ss_pred             CcceEEEEeCcccee
Q 037732          329 SQLKHLYIRGSHLTL  343 (350)
Q Consensus       329 ~~L~~L~l~~~~~~~  343 (350)
                      ++|+.|+|++|+++.
T Consensus         2 ~~L~~L~l~~n~i~~   16 (24)
T PF13516_consen    2 PNLETLDLSNNQITD   16 (24)
T ss_dssp             TT-SEEE-TSSBEHH
T ss_pred             CCCCEEEccCCcCCH
Confidence            566666666666543

...

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=81.57  E-value=0.032  Score=52.19  Aligned_cols=41  Identities=29%  Similarity=0.208  Sum_probs=25.7

Q ss_pred             cccceeeeccccccc--hhhhhhhhcccCcCcceEEEEeCcccee
Q 037732          301 EGIEDLWLSYLEEQD--VNYFVNELVKVGPSQLKHLYIRGSHLTL  343 (350)
Q Consensus       301 ~~L~~L~L~~n~l~~--~~~~~~~l~~~~~~~L~~L~l~~~~~~~  343 (350)
                      +.++.++++.|.++.  ...+...+  ..+++++.+.+++|++..
T Consensus       262 ~~l~~l~l~~nsi~~~~~~~L~~~l--~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  262 ETLRVLDLSRNSITEKGVRDLAEVL--VSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             hhhhhhhhhcCCccccchHHHHHHH--hhhHHHHHhhcccCcccc
Confidence            455777888777753  22234444  456678888888777653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	350
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-15
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	9e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-08
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	9e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-04
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	8e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	4e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 74.6 bits (184), Expect = 3e-15
 Identities = 26/148 (17%), Positives = 51/148 (34%), Gaps = 10/148 (6%)

Query: 74  TNLLLEVVECPQLELLFICADKESSSLTIPNKFFE-RMIQVRVINFSYMNLLSLPSSLGL 132
            N               I      +     +   +        +    + L   P     
Sbjct: 43  RNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFR 102

Query: 133 LSNLQNLSLYNCKLLDI-TVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCME 191
           LS+LQ++++    L+++   ++    L  L L  + ++ LP  +  L  LR L +R C E
Sbjct: 103 LSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPE 162

Query: 192 LEVIPPNI--------LSNLSHLEELYM 211
           L  +P  +           L +L+ L +
Sbjct: 163 LTELPEPLASTDASGEHQGLVNLQSLRL 190

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 73.1 bits (180), Expect = 1e-14
 Identities = 32/144 (22%), Positives = 57/144 (39%), Gaps = 8/144 (5%)

Query: 73  QTNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGL 132
            T+   E      L+ L +    E + +         +  ++ +      L +L  ++  
Sbjct: 172 STDASGEHQGLVNLQSLRL----EWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHH 227

Query: 133 LSNLQNLSLYNCKLLDI--TVIRDLKKLAVLCLRG-SDIKRLPVEVGELTLLRLLDLRDC 189
           L  L+ L L  C  L     +      L  L L+  S++  LP+++  LT L  LDLR C
Sbjct: 228 LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGC 287

Query: 190 MELEVIPPNILSNLSHLEELYMGP 213
           + L  +P  I + L     + + P
Sbjct: 288 VNLSRLPSLI-AQLPANCIILVPP 310

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 57.6 bits (140), Expect = 1e-09
 Identities = 15/93 (16%), Positives = 24/93 (25%), Gaps = 6/93 (6%)

Query: 122 NLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLL 181
            L      L       N               +     +    G  +K     + + T  
Sbjct: 24  ALRPYHDVLSQWQRHYNADRNRWHS--AWRQANSNNPQIETRTGRALKATADLLEDATQP 81

Query: 182 RL--LDLRDCMELEVIPPNILSNLSHLEELYMG 212
               L+LR    L   P      LSHL+ + + 
Sbjct: 82  GRVALELRSV-PLPQFPDQA-FRLSHLQHMTID 112

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 53.8 bits (130), Expect = 3e-08
 Identities = 20/102 (19%), Positives = 44/102 (43%), Gaps = 7/102 (6%)

Query: 107 FERMIQVRVINFSYMNLL-SLPSSLGLLSNLQNLSLYNCKLLDITV---IRDLKKLAVLC 162
              + ++  ++      L + P   G  + L+ L L +C  L +T+   I  L +L  L 
Sbjct: 225 IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNL-LTLPLDIHRLTQLEKLD 283

Query: 163 LRG-SDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNL 203
           LRG  ++ RLP  + +L    ++ +   ++ + +  +     
Sbjct: 284 LRGCVNLSRLPSLIAQLPANCIILVPPHLQAQ-LDQHRPVAR 324

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 67.3 bits (165), Expect = 7e-13
 Identities = 25/170 (14%), Positives = 64/170 (37%), Gaps = 13/170 (7%)

Query: 98  SSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDI---TVIRD 154
           S     ++       ++ ++ S+  ++++ S+   L  L++L   +  L  +   +V   
Sbjct: 65  SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 124

Query: 155 LKKLAVLCLRGSDIKRLPVEV-GELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGP 213
           L+ L  L +  +  +     +   L+ L +L +      E   P+I + L +L  L +  
Sbjct: 125 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184

Query: 214 RSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRGLF--LEKLET 261
              ++       +   + + L  L  L +   +  +     +  L  L+ 
Sbjct: 185 CQLEQ-------LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 227

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 28/157 (17%), Positives = 46/157 (29%), Gaps = 15/157 (9%)

Query: 113 VRVINFSYMNLLSLPSS-LGLLSNLQNLSLYNCKLLDITVI----RDLKKLAVLCLRGSD 167
              +      L SLP      L+ L  LSL +  L               L  L L  + 
Sbjct: 30  ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89

Query: 168 IKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVK 227
           +  +      L  L  LD +     ++   ++  +L +L  L +                
Sbjct: 90  VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS-------HTHTRVAF 142

Query: 228 NASLHELKHLISLELQI-QDVNTFPRGLF--LEKLET 261
           N   + L  L  L++        F   +F  L  L  
Sbjct: 143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 179

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 67.2 bits (165), Expect = 1e-12
 Identities = 31/147 (21%), Positives = 65/147 (44%), Gaps = 16/147 (10%)

Query: 107 FERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGS 166
            E +  +  +  +   + S+   +  L+NL+ L+L   ++ DI+ + +L KL  L +  +
Sbjct: 40  QEELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTN 98

Query: 167 DIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGV 226
            I  +   +  LT LR L L +   +  I P  L+NL+ +  L +     +    ++  +
Sbjct: 99  KITDIS-ALQNLTNLRELYLNED-NISDISP--LANLTKMYSLNL---GANHNLSDLSPL 151

Query: 227 KNASLHELKHLISLEL---QIQDVNTF 250
            N     +  L  L +   +++DV   
Sbjct: 152 SN-----MTGLNYLTVTESKVKDVTPI 173

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 62.2 bits (152), Expect = 4e-11
 Identities = 22/106 (20%), Positives = 50/106 (47%), Gaps = 4/106 (3%)

Query: 107 FERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGS 166
              ++++  +     N ++  S+L  L+NL+ L L    + DI+ + +L K+  L L  +
Sbjct: 84  LSNLVKLTNLYIGT-NKITDISALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGAN 142

Query: 167 DIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMG 212
                   +  +T L  L + +  +++ + P  ++NL+ L  L + 
Sbjct: 143 HNLSDLSPLSNMTGLNYLTVTES-KVKDVTP--IANLTDLYSLSLN 185

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 57.2 bits (139), Expect = 2e-09
 Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 4/92 (4%)

Query: 120 YMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGSDIKRLPVEVGELT 179
               ++   +   L ++  L +   K+  I  I  L  L  L L G+ I  +   +  L 
Sbjct: 30  QKASVTDVVTQEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDIS-PLSNLV 88

Query: 180 LLRLLDLRDCMELEVIPPNILSNLSHLEELYM 211
            L  L +    ++  I    L NL++L ELY+
Sbjct: 89  KLTNLYIGTN-KITDISA--LQNLTNLRELYL 117

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 55.6 bits (135), Expect = 6e-09
 Identities = 26/108 (24%), Positives = 52/108 (48%), Gaps = 5/108 (4%)

Query: 105 KFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLR 164
                + Q+  +     N +S  +++  L+ L+ L++ + ++ DI+V+ +L +L  L L 
Sbjct: 237 SPLANLSQLTWLEIGT-NQISDINAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLN 295

Query: 165 GSDIKRLPVEV-GELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYM 211
            + +    +EV G LT L  L L     +  I P  L++LS ++    
Sbjct: 296 NNQLGNEDMEVIGGLTNLTTLFLSQN-HITDIRP--LASLSKMDSADF 340

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 54.9 bits (133), Expect = 1e-08
 Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 4/84 (4%)

Query: 128 SSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLR 187
                L+      L    + D+    +L+ +  L + G  +  +   +  LT L  L+L 
Sbjct: 16  FPDADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQ-GIEYLTNLEYLNLN 74

Query: 188 DCMELEVIPPNILSNLSHLEELYM 211
              ++  I P  LSNL  L  LY+
Sbjct: 75  GN-QITDISP--LSNLVKLTNLYI 95

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 53.7 bits (130), Expect = 3e-08
 Identities = 22/106 (20%), Positives = 50/106 (47%), Gaps = 5/106 (4%)

Query: 107 FERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGS 166
              +  +  ++ +Y N +   S L  L++L   + Y  ++ DIT + ++ +L  L +  +
Sbjct: 173 IANLTDLYSLSLNY-NQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNN 231

Query: 167 DIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMG 212
            I  L   +  L+ L  L++    ++  I    + +L+ L+ L +G
Sbjct: 232 KITDLS-PLANLSQLTWLEIGTN-QISDINA--VKDLTKLKMLNVG 273

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 42.9 bits (102), Expect = 8e-05
 Identities = 13/76 (17%), Positives = 28/76 (36%), Gaps = 4/76 (5%)

Query: 136 LQNLSLYNCKLLDITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVI 195
              L+     +  I    DL +     L+ + +  +     EL  +  L +    ++  I
Sbjct: 2   AATLATLPAPINQIFPDADLAEGIRAVLQKASVTDVV-TQEELESITKLVVAGE-KVASI 59

Query: 196 PPNILSNLSHLEELYM 211
               +  L++LE L +
Sbjct: 60  QG--IEYLTNLEYLNL 73

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 66.7 bits (163), Expect = 2e-12
 Identities = 30/181 (16%), Positives = 67/181 (37%), Gaps = 29/181 (16%)

Query: 98  SSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDI---TVIRD 154
           S     ++       ++ ++ S+  ++++ S+   L  L++L   +  L  +   +V   
Sbjct: 360 SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 419

Query: 155 LKKLAVLCLRGSDIKRLPVEV-GELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMG- 212
           L+ L  L +  +  +     +   L+ L +L +      E   P+I + L +L  L +  
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479

Query: 213 -------PRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRGLF--LEKLETFK 263
                  P +F+                L  L  L +    + + P G+F  L  L+   
Sbjct: 480 CQLEQLSPTAFNS---------------LSSLQVLNMASNQLKSVPDGIFDRLTSLQKIW 524

Query: 264 I 264
           +
Sbjct: 525 L 525

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 57.8 bits (140), Expect = 2e-09
 Identities = 31/154 (20%), Positives = 54/154 (35%), Gaps = 13/154 (8%)

Query: 115 VINFSYMNLLSLPSSLGLLSNLQNLSLYNCKL--LDITVIRDLKKLAVLCLRGSDIKRLP 172
                 +N   +P    L  + +NL L    L  L         +L VL L   +I+ + 
Sbjct: 11  TYQCMELNFYKIPD--NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 68

Query: 173 VEV-GELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASL 231
                 L+ L  L L     ++ +     S LS L++L          E  +  ++N  +
Sbjct: 69  DGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAV-------ETNLASLENFPI 120

Query: 232 HELKHLISLELQIQDVNTFPRGLFLEKLETFKIL 265
             LK L  L +    + +F    +   L   + L
Sbjct: 121 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 154

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 55.9 bits (135), Expect = 9e-09
 Identities = 19/115 (16%), Positives = 50/115 (43%), Gaps = 6/115 (5%)

Query: 103 PNKFFERMIQVRVINFSYMNLLSLPSS-LGLLSNLQNLSLYNCKLLDIT---VIRDLKKL 158
               F  +  +  ++ S+ +     +     LS+L+ L +      +     +  +L+ L
Sbjct: 413 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 472

Query: 159 AVLCLRGSDIKRLPVEV-GELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMG 212
             L L    +++L       L+ L++L++    +L+ +P  I   L+ L+++++ 
Sbjct: 473 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLH 526

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 55.1 bits (133), Expect = 2e-08
 Identities = 33/163 (20%), Positives = 65/163 (39%), Gaps = 15/163 (9%)

Query: 101 TIPNKFFERMIQVRVINFSYMNLLSLPS-SLGLLSNLQNLSLYNCKLLDI--TVIRDLKK 157
            + +  F    +++V++ S   + ++   +   LS+L  L L    +  +       L  
Sbjct: 42  HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101

Query: 158 LAVLCLRGSDIKRLPVEV-GELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSF 216
           L  L    +++  L     G L  L+ L++   +      P   SNL++LE L +   S 
Sbjct: 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL---SS 158

Query: 217 DKWEVEVEGVKNASLHELKHL----ISLELQIQDVNTFPRGLF 255
           +K     + +    L  L  +    +SL+L +  +N    G F
Sbjct: 159 NKI----QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF 197

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 21/112 (18%), Positives = 37/112 (33%), Gaps = 10/112 (8%)

Query: 103 PNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLC 162
              +      + ++N  +    +L      L +L+ L+  + K  +     DL  L  L 
Sbjct: 299 DFSYNFGWQHLELVNCKFGQFPTLK-----LKSLKRLTFTSNKGGNAFSEVDLPSLEFLD 353

Query: 163 LRGSDIKRLPVEVGE---LTLLRLLDLRDCMELEVIPPNILSNLSHLEELYM 211
           L  + +             T L+ LDL     +  +  N    L  LE L  
Sbjct: 354 LSRNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNF-LGLEQLEHLDF 403

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 66.4 bits (161), Expect = 4e-12
 Identities = 60/348 (17%), Positives = 112/348 (32%), Gaps = 101/348 (29%)

Query: 21  QGVNKMQVARARAHGLVHKLKAC----------CMFSM---------HDVVRDVAISIAS 61
           Q   K  V+R +      KL+             +  +          DV     +    
Sbjct: 124 QVFAKYNVSRLQ---PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180

Query: 62  TEQNVF---SATEEQTNLLLEVVE--CPQLELLFICADKESSSLTIPNKFFERMIQVRVI 116
            +  +F            +LE+++    Q++  +    +   S  I  +      ++R  
Sbjct: 181 -DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW--TSRSDHSSNIKLRIHSIQAELR-- 235

Query: 117 NFSYMNLLSLPSSLGLLSNLQNLSLYN-----CKLLDITVIRDLKKLAVLCLRGSDIKRL 171
               +      + L +L N+QN   +N     CK+L  T  R   K     L  +    +
Sbjct: 236 --RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT--RF--KQVTDFLSAATTTHI 289

Query: 172 PVEVGELTL-----LRLL---------DLRDCMELEVIPPNILSNLSHLEELYMGPRSFD 217
            ++   +TL       LL         DL    E+    P  LS ++  E +  G  ++D
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR--EVLTTNPRRLSIIA--ESIRDGLATWD 345

Query: 218 KWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRGLFLEKLETFKILIGGVWGWEYADI 277
            W       K+ +  +L  +I   L + +   + R +F ++L  F               
Sbjct: 346 NW-------KHVNCDKLTTIIESSLNVLEPAEY-RKMF-DRLSVF--------------- 381

Query: 278 WCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVK 325
                     + I      +L L     +W   + + DV   VN+L K
Sbjct: 382 --PP-----SAHIPTI---LLSL-----IW-FDVIKSDVMVVVNKLHK 413

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.0 bits (134), Expect = 1e-08
 Identities = 55/332 (16%), Positives = 112/332 (33%), Gaps = 81/332 (24%)

Query: 50  DVVRDVAISIASTEQNVFSATEEQT-NLLLEVVECPQLEL-----------LFICADKES 97
           D +     +  S + +  + T ++  +LLL+ ++C   +L           L I A+   
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIR 338

Query: 98  SSLTIPNKF-------FERMIQVRVINFS-------YMNLLSLPSSLGLLSNLQNLSLYN 143
             L   + +          +I+  +           +  L   P S  + + L  LSL  
Sbjct: 339 DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL--LSLIW 396

Query: 144 CKLLDITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNL 203
             ++   V+  + KL    L     K   + +  + L   + L +   L           
Sbjct: 397 FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL----------- 445

Query: 204 SH--LEELYMGPRSFDKWEVEVEGVKNASLHELK-HLISLELQIQDVNTFPRGLFLEKLE 260
            H  + + Y  P++FD  ++    +       +  HL ++E   + +  F   +FL+   
Sbjct: 446 -HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE-HPERMTLFRM-VFLD--- 499

Query: 261 TFKILIGGVWGWEYADIWCREFKIDLDSKIRLKDGLILKLEG-----IEDL--WLSYLEE 313
                    + +             L+ KIR  D       G     ++ L  +  Y+ +
Sbjct: 500 ---------FRF-------------LEQKIR-HDSTAWNASGSILNTLQQLKFYKPYICD 536

Query: 314 QDVNY--FVNELVKVGPSQLKHLYIRGSHLTL 343
            D  Y   VN ++   P   ++L I   +  L
Sbjct: 537 NDPKYERLVNAILDFLPKIEENL-ICSKYTDL 567

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 64.7 bits (158), Expect = 1e-11
 Identities = 18/161 (11%), Positives = 56/161 (34%), Gaps = 9/161 (5%)

Query: 86  LELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCK 145
            +L+  C + +    +I  K     ++   I     N+  +  ++  L+ L+   + N  
Sbjct: 159 SDLIKDCINSDPQQKSIK-KSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSP 217

Query: 146 LLD--ITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNL 203
            +   I    + +         +      ++   L  L  +++ +C  L  +P  +   L
Sbjct: 218 FVAENICEAWENENSEYAQQYKT----EDLKWDNLKDLTDVEVYNCPNLTKLPTFL-KAL 272

Query: 204 SHLEELYMGP-RSFDKWEVEVEGVKNASLHELKHLISLELQ 243
             ++ + +   R     +++ +    A     + +  + + 
Sbjct: 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIG 313

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 53.9 bits (130), Expect = 4e-08
 Identities = 12/101 (11%), Positives = 32/101 (31%), Gaps = 11/101 (10%)

Query: 122 NLLSLPSSLGLLSNLQNLSLYNCKLLDI--TVIRDLKKLAVLCLRG---------SDIKR 170
              +       L +L ++ +YNC  L    T ++ L ++ ++ +            D  +
Sbjct: 237 QYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQ 296

Query: 171 LPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYM 211
              +      ++++ +             L  +  L  L  
Sbjct: 297 ALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLEC 337

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 22/202 (10%), Positives = 64/202 (31%), Gaps = 36/202 (17%)

Query: 75  NLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLS 134
             L +     ++++++I       +  +      +M ++ ++   Y  L     + G   
Sbjct: 296 QALADAPVGEKIQIIYI-GYNNLKTFPVETSLQ-KMKKLGMLECLYNQLEGKLPAFGSEI 353

Query: 135 NLQNLSLYNCKLLDI--TVIRDLKKLAVLCLRGSDIKRLP--VEVGELTLLRLLDLRD-- 188
            L +L+L   ++ +I        +++  L    + +K +P   +   ++++  +D     
Sbjct: 354 KLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNE 413

Query: 189 ------------------CMELEV----------IPPNILSNLSHLEELYMGPRSFDKWE 220
                              + +             P  + S  S L  + +      +  
Sbjct: 414 IGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIP 473

Query: 221 VEVEGVKNASLHELKHLISLEL 242
                 +N +      L S++L
Sbjct: 474 KNSLKDENENFKNTYLLTSIDL 495

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 49.7 bits (119), Expect = 9e-07
 Identities = 21/129 (16%), Positives = 40/129 (31%), Gaps = 18/129 (13%)

Query: 101 TIPNKFFERMIQVRVINFSYMNLLSLP--------SSLGLLSNLQNLSLYNCKLLDI--- 149
             P + F     +  IN     L  +P         +      L ++ L   KL  +   
Sbjct: 447 KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDD 506

Query: 150 TVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMEL------EVIPPNILSNL 203
                L  L  + L  +   + P +    + L+   +R+  +          P  I +  
Sbjct: 507 FRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGI-TLC 565

Query: 204 SHLEELYMG 212
             L +L +G
Sbjct: 566 PSLTQLQIG 574

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 17/120 (14%), Positives = 41/120 (34%), Gaps = 12/120 (10%)

Query: 101 TIPNKF-FERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDI--------TV 151
            + + F    +  +  I+ SY +    P+     S L+   + N +              
Sbjct: 502 KLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEG 561

Query: 152 IRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYM 211
           I     L  L +  +DI+++  ++     + +LD++D      I  + +          +
Sbjct: 562 ITLCPSLTQLQIGSNDIRKVNEKI--TPNISVLDIKDNP-NISIDLSYVCPYIEAGMYML 618

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 64.4 bits (157), Expect = 1e-11
 Identities = 25/114 (21%), Positives = 50/114 (43%), Gaps = 4/114 (3%)

Query: 101 TIPNKFFERMIQVRVINFSYMNLLSL--PSSLGLLSNLQNLSLYNCKLLDITVIRDLKKL 158
           +IP+  F R+  +  ++   +  L      +   L NL+ L+L  C + D+  +  L  L
Sbjct: 161 SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGL 220

Query: 159 AVLCLRGSDIKRLPVEV-GELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYM 211
             L + G+    +       L+ L+ L + +  ++ +I  N    L+ L EL +
Sbjct: 221 EELEMSGNHFPEIRPGSFHGLSSLKKLWVMN-SQVSLIERNAFDGLASLVELNL 273

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 62.1 bits (151), Expect = 7e-11
 Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 4/116 (3%)

Query: 101 TIPNKFFERMIQVRVINFSYMNLLSLPS-SLGLLSNLQNLSLYNCKLLDIT--VIRDLKK 157
            I    F  +  + V+     ++  +   +   L++L  L L++  L  I       L K
Sbjct: 89  MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSK 148

Query: 158 LAVLCLRGSDIKRLPVEV-GELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMG 212
           L  L LR + I+ +P      +  L  LDL +  +LE I       L +L+ L +G
Sbjct: 149 LRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLG 204

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 64.0 bits (156), Expect = 2e-11
 Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 4/116 (3%)

Query: 101 TIPNKFFERMIQVRVINFSYMNLLSLPS-SLGLLSNLQNLSLYNCKLLDIT--VIRDLKK 157
            I    F+ +  + ++  S  ++ ++   +   L+NL  L L++ +L  I       L K
Sbjct: 78  IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSK 137

Query: 158 LAVLCLRGSDIKRLPVEV-GELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMG 212
           L  L LR + I+ +P      +  LR LDL +   L  I       LS+L  L + 
Sbjct: 138 LKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLA 193

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 52.1 bits (125), Expect = 1e-07
 Identities = 40/172 (23%), Positives = 73/172 (42%), Gaps = 19/172 (11%)

Query: 101 TIPNKFFERMIQVRVINFSYMNLLSLPSSL-GLLSNLQNLSLYNCKLLDITVI-----RD 154
           TIPN  F  + +++ +      + S+PS     + +L+ L L   K   ++ I       
Sbjct: 126 TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKR--LSYISEGAFEG 183

Query: 155 LKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPR 214
           L  L  L L   +++ +P  +  L  L  LDL     L  I P     L HL++L+M   
Sbjct: 184 LSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGN-HLSAIRPGSFQGLMHLQKLWMI-- 239

Query: 215 SFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRGLF--LEKLETFKI 264
                + +++ ++  +   L+ L+ + L   ++   P  LF  L  LE   +
Sbjct: 240 -----QSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHL 286

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 64.1 bits (156), Expect = 2e-11
 Identities = 20/154 (12%), Positives = 45/154 (29%), Gaps = 25/154 (16%)

Query: 112 QVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDI---TVIRDLKKLAVLCLRGSDI 168
           +         +   L         +Q   +    L +      ++ + KL +L    + +
Sbjct: 526 RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV 585

Query: 169 KRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMG-------PRSFDKWEV 221
           + L    G    L  L L    ++E IP +  +    +E L          P  F     
Sbjct: 586 RHLE-AFGTNVKLTDLKLDYN-QIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIF----- 638

Query: 222 EVEGVKNASLHELKHLISLELQIQDVNTFPRGLF 255
                   +   +  + S++     + +  R + 
Sbjct: 639 --------NAKSVYVMGSVDFSYNKIGSEGRNIS 664

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 61.8 bits (150), Expect = 1e-10
 Identities = 16/140 (11%), Positives = 40/140 (28%), Gaps = 5/140 (3%)

Query: 122 NLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLL 181
            +  +  ++  L+ LQ +   N           +             +   +    L  L
Sbjct: 436 RITFISKAIQRLTKLQIIYFANSPFTYD--NIAVDWEDANSDYAKQYENEELSWSNLKDL 493

Query: 182 RLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKN--ASLHELKHLIS 239
             ++L +C  +  +P  +  +L  L+ L +                           +  
Sbjct: 494 TDVELYNCPNMTQLPDFL-YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQI 552

Query: 240 LELQIQDVNTFPRGLFLEKL 259
             +   ++  FP    L+K+
Sbjct: 553 FYMGYNNLEEFPASASLQKM 572

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 60.3 bits (146), Expect = 4e-10
 Identities = 26/148 (17%), Positives = 49/148 (33%), Gaps = 23/148 (15%)

Query: 79  EVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLS-LPSSLGLLSNLQ 137
            +    +L++++      +S  T  N      +     N  Y         S   L +L 
Sbjct: 443 AIQRLTKLQIIYF----ANSPFTYDNI----AVDWEDANSDYAKQYENEELSWSNLKDLT 494

Query: 138 NLSLYNCKLLDI--TVIRDLKKLAVLCLRG----------SDIKRLPVEVGELTLLRLLD 185
           ++ LYNC  +      + DL +L  L +            +D  RL  +      +++  
Sbjct: 495 DVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFY 554

Query: 186 LRDCMELEVIPPNI-LSNLSHLEELYMG 212
           +     LE  P +  L  +  L  L   
Sbjct: 555 MGYN-NLEEFPASASLQKMVKLGLLDCV 581

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 55.7 bits (134), Expect = 1e-08
 Identities = 20/128 (15%), Positives = 40/128 (31%), Gaps = 16/128 (12%)

Query: 101 TIPNKFFERMIQVRVINFSYMNLLSLPS--------SLGLLSNLQNLSLYNCKLLDI--- 149
             P + F     +  I  S   + S+P         +      L  + L   KL  +   
Sbjct: 687 KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDD 746

Query: 150 TVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEV-----IPPNILSNLS 204
                L  L+ + +  +     P +    + L+   +R   + E        P  ++   
Sbjct: 747 FRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCP 806

Query: 205 HLEELYMG 212
            L +L +G
Sbjct: 807 SLIQLQIG 814

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 48.3 bits (115), Expect = 2e-06
 Identities = 13/107 (12%), Positives = 35/107 (32%), Gaps = 17/107 (15%)

Query: 101 TIPNKF-FERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLA 159
           ++ + F    +  +  ++ SY    S P+     S L+   + + +  +   I       
Sbjct: 742 SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRI------- 794

Query: 160 VLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHL 206
                   +++ P  +     L  L +    ++  +   +   L  L
Sbjct: 795 --------LRQWPTGITTCPSLIQLQIGSN-DIRKVDEKLTPQLYIL 832

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 43.3 bits (102), Expect = 9e-05
 Identities = 31/208 (14%), Positives = 63/208 (30%), Gaps = 50/208 (24%)

Query: 102 IPNKFFERMIQVRVINFSYMNLL-SLPSSLGLLSNLQNLSLYNCKLLDI----------- 149
            P    +   +V  ++ +       +P ++G L+ L+ LS                    
Sbjct: 314 QPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTP 373

Query: 150 ----------------TVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCM--- 190
                             +   ++L +  L    I R P E+  +     + L+D     
Sbjct: 374 DMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNP-EMKPIKKDSRISLKDTQIGN 432

Query: 191 ---ELEVIPPNILSNLSHLEELYM------------GPRSFDKWEVEVEGVKNASLHELK 235
               +  I   I   L+ L+ +Y                  +    +    +  S   LK
Sbjct: 433 LTNRITFISKAI-QRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLK 491

Query: 236 HLISLELQ-IQDVNTFPRGLF-LEKLET 261
            L  +EL    ++   P  L+ L +L++
Sbjct: 492 DLTDVELYNCPNMTQLPDFLYDLPELQS 519

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 62.8 bits (153), Expect = 5e-11
 Identities = 48/273 (17%), Positives = 90/273 (32%), Gaps = 32/273 (11%)

Query: 101 TIPNKFFERMIQVRVINFSYMNLLSLP-SSLGLLSNLQNLSLYNCKLLDI--TVIRDLKK 157
            I +        ++V+      + ++   +   L +L++L L +  L  +  +    L  
Sbjct: 40  YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSS 99

Query: 158 LAVLCLRGSDIKRLPV--EVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRS 215
           L  L L G+  + L V      LT L+ L + +      I     + L+ L EL +   S
Sbjct: 100 LKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS 159

Query: 216 FDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRGLF-----LEKLETFKILIGGV- 269
                      ++ SL  ++ +  L L + +              +  LE     +    
Sbjct: 160 LRN-------YQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQ 212

Query: 270 WGWEYADIWCREFKIDLDSKIRLKDGLILKLEGIED--LWLSYLEEQDVNY--------- 318
           +     D      K        L D    +L  +    L LS +E  D            
Sbjct: 213 FSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPS 272

Query: 319 ---FVNELVKVGPSQLKHLYIRGSHLTLNPAES 348
               V+EL KV    ++ L+I   +L  + +  
Sbjct: 273 ESDVVSELGKVETVTIRRLHIPQFYLFYDLSTV 305

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 53.2 bits (128), Expect = 6e-08
 Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 6/99 (6%)

Query: 115 VINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDIT--VIRDLKKLAVLCLRGSDIKRLP 172
           V +    +  S+PS  GL + +++L L   K+  I    +R    L VL L+ S I  + 
Sbjct: 9   VCDGRSRSFTSIPS--GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIE 66

Query: 173 VEV-GELTLLRLLDLRDCMELEVIPPNILSNLSHLEELY 210
            +    L  L  LDL D   L  +  +    LS L+ L 
Sbjct: 67  GDAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLKYLN 104

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 50.1 bits (120), Expect = 5e-07
 Identities = 20/134 (14%), Positives = 51/134 (38%), Gaps = 21/134 (15%)

Query: 98  SSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKL----------- 146
            S+    +    +  +  ++ S      +P S      ++ L+L +  +           
Sbjct: 374 RSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTL 433

Query: 147 --LDI------TVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPN 198
             LD+      +    L +L  L +  + +K LP       +L ++ +    +L+ +P  
Sbjct: 434 EVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDASL-FPVLLVMKISRN-QLKSVPDG 491

Query: 199 ILSNLSHLEELYMG 212
           I   L+ L+++++ 
Sbjct: 492 IFDRLTSLQKIWLH 505

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 49.0 bits (117), Expect = 1e-06
 Identities = 29/148 (19%), Positives = 52/148 (35%), Gaps = 10/148 (6%)

Query: 73  QTNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPS-SLG 131
           +  L L  VE     L  +     S S  +        + +R ++     L    S    
Sbjct: 248 RYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYS 307

Query: 132 LLSNLQNLSLYNCKLLDIT--VIRDLKKLAVLCLRGSDIKRLPVE----VGELTLLRLLD 185
           LL  ++ +++ N K+  +     + LK L  L L  + +    ++     G    L+ L 
Sbjct: 308 LLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLV 367

Query: 186 LRDCMELEVIP--PNILSNLSHLEELYM 211
           L     L  +     IL  L +L  L +
Sbjct: 368 LSQN-HLRSMQKTGEILLTLKNLTSLDI 394

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 20/119 (16%), Positives = 44/119 (36%), Gaps = 11/119 (9%)

Query: 97  SSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLS---NLQNLSLYNCKLLDI-TVI 152
                  +        ++ +  S  +L S+  +  +L    NL +L +       +    
Sbjct: 347 VEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSC 406

Query: 153 RDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYM 211
           +  +K+  L L  + I+ +   +     L +LD+ +   L+         L  L+ELY+
Sbjct: 407 QWPEKMRFLNLSSTGIRVVKTCI--PQTLEVLDVSNN-NLDSFS----LFLPRLQELYI 458

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 61.6 bits (150), Expect = 1e-10
 Identities = 34/153 (22%), Positives = 72/153 (47%), Gaps = 15/153 (9%)

Query: 114 RVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDI--TVIRDLKKLAVLCLRGSDIKRL 171
            V + S++ L  +P    L +N+  L+L + +L  +         +L  L +  + I +L
Sbjct: 7   EVADCSHLKLTQVPD--DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKL 64

Query: 172 PVEV-GELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNAS 230
             E+  +L +L++L+L+   EL  +     +  ++L EL++           ++ +KN  
Sbjct: 65  EPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLM-------SNSIQKIKNNP 116

Query: 231 LHELKHLISLELQIQDVNTFPRGLF--LEKLET 261
             + K+LI+L+L    +++   G    LE L+ 
Sbjct: 117 FVKQKNLITLDLSHNGLSSTKLGTQVQLENLQE 149

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 21/104 (20%), Positives = 43/104 (41%), Gaps = 5/104 (4%)

Query: 113 VRVINFSYMNLLSL-PSSLGLLSNLQNLSLYNCKLLDI--TVIRDLKKLAVLCLRGSDIK 169
           + V+N ++  L  L  ++    S L +L +    +  +   + + L  L VL L+ +++ 
Sbjct: 27  ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86

Query: 170 RLPVEV-GELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMG 212
           +L  +     T L  L L     ++ I  N      +L  L + 
Sbjct: 87  QLSDKTFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLS 129

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 56.9 bits (138), Expect = 4e-09
 Identities = 24/125 (19%), Positives = 53/125 (42%), Gaps = 15/125 (12%)

Query: 101 TIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNL---SLYNCKL--LDITVIRDL 155
            +    F  +  ++ +    + L ++ SS      L+NL    L N  +  ++  ++  L
Sbjct: 444 QLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGL 503

Query: 156 KKLAVLCLRGSDIKRLPVEV---------GELTLLRLLDLRDCMELEVIPPNILSNLSHL 206
           +KL +L L+ +++ RL               L+ L +L+L      + IP  +  +L  L
Sbjct: 504 EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNG-FDEIPVEVFKDLFEL 562

Query: 207 EELYM 211
           + + +
Sbjct: 563 KIIDL 567

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 52.7 bits (127), Expect = 9e-08
 Identities = 26/126 (20%), Positives = 55/126 (43%), Gaps = 13/126 (10%)

Query: 98  SSLTIPNKFFERMIQVRVINFSYMNLLSLPSS-LGLLSNLQNLSLYNCKLLDI------- 149
            ++      F+ +  + +++ S  N+ ++    L  L  L+ L L +  L  +       
Sbjct: 467 KNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPG 526

Query: 150 ---TVIRDLKKLAVLCLRGSDIKRLPVEV-GELTLLRLLDLRDCMELEVIPPNILSNLSH 205
                ++ L  L +L L  +    +PVEV  +L  L+++DL     L  +P ++ +N   
Sbjct: 527 GPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNN-LNTLPASVFNNQVS 585

Query: 206 LEELYM 211
           L+ L +
Sbjct: 586 LKSLNL 591

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 27/125 (21%), Positives = 53/125 (42%), Gaps = 14/125 (11%)

Query: 101 TIPNKFFERMIQVRVINFSYMNLLSL---------PSSLGLLSNLQNLSLYNCKLLDIT- 150
            I +   E + ++ +++  + NL  L            L  LS+L  L+L +    +I  
Sbjct: 494 NINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPV 553

Query: 151 -VIRDLKKLAVLCLRGSDIKRLPVEV-GELTLLRLLDLRDCMELEVIPPNILS-NLSHLE 207
            V +DL +L ++ L  +++  LP  V      L+ L+L+    +  +   +      +L 
Sbjct: 554 EVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQK-NLITSVEKKVFGPAFRNLT 612

Query: 208 ELYMG 212
           EL M 
Sbjct: 613 ELDMR 617

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.2 bits (123), Expect = 3e-07
 Identities = 49/294 (16%), Positives = 90/294 (30%), Gaps = 70/294 (23%)

Query: 101 TIPNKFFERMIQVRVINFSYMNLLSL-----------PSSLGLLSNLQNLSLYNCKLLDI 149
            + +     +  VR +N    +                 S   L  L++L++ +  +  I
Sbjct: 286 HLFSHSLHGLFNVRYLNLKR-SFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGI 344

Query: 150 T--VIRDLKKLAVLCLRGSDIKRLPVEVG-----ELTLLRLLDLRDCMELEVIPPNILSN 202
              +   L  L  L L  S      +          + L +L+L    ++  I  +  S 
Sbjct: 345 KSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKN-KISKIESDAFSW 403

Query: 203 LSHLEELYMG---------PRSFDKWEV---------EVEGVKNASLHELKHLISLEL-- 242
           L HLE L +G          + +   E          +   +   S   +  L  L L  
Sbjct: 404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRR 463

Query: 243 -QIQDVNTFPRGLF-LEKLETFKILIGGVWGWEYADIWCREFKIDLDS-KIR-LKDGLIL 298
             +++V++ P     L  L                        +DL +  I  + D ++ 
Sbjct: 464 VALKNVDSSPSPFQPLRNLTI----------------------LDLSNNNIANINDDMLE 501

Query: 299 KLEGIEDLWLSY--LEEQDVNYFVNELVKV--GPSQLKHLYIRGSHLTLNPAES 348
            LE +E L L +  L     +      +    G S L  L +  +     P E 
Sbjct: 502 GLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEV 555

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 25/125 (20%), Positives = 44/125 (35%), Gaps = 16/125 (12%)

Query: 127 PSSLGLLSNLQNLSLYNCKL-----LDITVIRDLKKLAVLCLRGSDIKRLPVEVGE---L 178
           P     +  L  L L N +L       + +      +  L L  S +             
Sbjct: 188 PGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKW 247

Query: 179 TLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLI 238
           T L +LDL     L V+  +  + L  LE  ++           ++ + + SLH L ++ 
Sbjct: 248 TNLTMLDLSYN-NLNVVGNDSFAWLPQLEYFFLE-------YNNIQHLFSHSLHGLFNVR 299

Query: 239 SLELQ 243
            L L+
Sbjct: 300 YLNLK 304

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 61.1 bits (149), Expect = 1e-10
 Identities = 26/106 (24%), Positives = 48/106 (45%), Gaps = 5/106 (4%)

Query: 107 FERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGS 166
              + QV  +       +     +  L+NL  ++  N +L DIT +++L KL  + +  +
Sbjct: 42  QTDLDQVTTLQADR-LGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNN 100

Query: 167 DIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMG 212
            I  +   +  LT L  L L +  ++  I P  L NL++L  L + 
Sbjct: 101 QIADIT-PLANLTNLTGLTLFNN-QITDIDP--LKNLTNLNRLELS 142

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 58.4 bits (142), Expect = 1e-09
 Identities = 27/106 (25%), Positives = 53/106 (50%), Gaps = 6/106 (5%)

Query: 107 FERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGS 166
            + + ++  I  +  N ++  + L  L+NL  L+L+N ++ DI  +++L  L  L L  +
Sbjct: 86  LKNLTKLVDILMNN-NQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSN 144

Query: 167 DIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMG 212
            I  +   +  LT L+ L   +   +  + P  L+NL+ LE L + 
Sbjct: 145 TISDIS-ALSGLTSLQQLSFGNQ--VTDLKP--LANLTTLERLDIS 185

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 58.1 bits (141), Expect = 1e-09
 Identities = 19/122 (15%), Positives = 42/122 (34%), Gaps = 10/122 (8%)

Query: 96  ESSSLTIPNKF-----FERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDIT 150
            S+++T             + +         N+    S    L  +  L      +  I 
Sbjct: 4   GSATITQDTPINQIFTDTALAEKMKTVLGKTNVTDTVS-QTDLDQVTTLQADRLGIKSID 62

Query: 151 VIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELY 210
            +  L  L  +    + +  +   +  LT L  + + +  ++  I P  L+NL++L  L 
Sbjct: 63  GVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNN-QIADITP--LANLTNLTGLT 118

Query: 211 MG 212
           + 
Sbjct: 119 LF 120

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 56.1 bits (136), Expect = 6e-09
 Identities = 24/104 (23%), Positives = 43/104 (41%), Gaps = 3/104 (2%)

Query: 107 FERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGS 166
              +  +  +   + N +S  S +  L+ LQ L  YN K+ D++ + +L  +  L    +
Sbjct: 305 ISNLKNLTYLTLYF-NNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHN 363

Query: 167 DIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELY 210
            I  L   +  LT +  L L D       P N  +N+S    + 
Sbjct: 364 QISDLT-PLANLTRITQLGLNDQ-AWTNAPVNYKANVSIPNTVK 405

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 35/161 (21%), Positives = 65/161 (40%), Gaps = 20/161 (12%)

Query: 107 FERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGS 166
              +  +  ++ +  N L    +L  L+NL +L L N ++ ++  +  L KL  L L  +
Sbjct: 217 LGILTNLDELSLNG-NQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGAN 275

Query: 167 DIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGV 226
            I  +   +  LT L  L+L +  +LE I P  +SNL +L  L +           +  +
Sbjct: 276 QISNIS-PLAGLTALTNLELNEN-QLEDISP--ISNLKNLTYLTLY-------FNNISDI 324

Query: 227 KNASLHELKHLISLEL---QIQDVNTFPRGLFLEKLETFKI 264
               +  L  L  L     ++ DV++      L  +     
Sbjct: 325 SP--VSSLTKLQRLFFYNNKVSDVSSLA---NLTNINWLSA 360

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 54.2 bits (131), Expect = 3e-08
 Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 5/106 (4%)

Query: 107 FERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGS 166
              + ++  +     N +S  S L  L+ L NL L   +L DI+ I +LK L  L L  +
Sbjct: 261 LSGLTKLTELKLGA-NQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFN 319

Query: 167 DIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMG 212
           +I  +   V  LT L+ L   +  ++  +    L+NL+++  L  G
Sbjct: 320 NISDIS-PVSSLTKLQRLFFYNN-KVSDVSS--LANLTNINWLSAG 361

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 53.0 bits (128), Expect = 6e-08
 Identities = 21/104 (20%), Positives = 44/104 (42%), Gaps = 3/104 (2%)

Query: 107 FERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGS 166
              + +++ + F   N +S  SSL  L+N+  LS  + ++ D+T + +L ++  L L   
Sbjct: 327 VSSLTKLQRLFFYN-NKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQ 385

Query: 167 DIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELY 210
                PV       + + +    +   +I P  +S+     E  
Sbjct: 386 AWTNAPVNY--KANVSIPNTVKNVTGALIAPATISDGGSYTEPD 427

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 58.8 bits (143), Expect = 1e-10
 Identities = 20/104 (19%), Positives = 43/104 (41%), Gaps = 3/104 (2%)

Query: 110 MIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGSDIK 169
           M  +  I  + +N+  L + +    N+++L++ N    +   I  L  L  L + G D+ 
Sbjct: 43  MNSLTYITLANINVTDL-TGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVT 101

Query: 170 RLPVE-VGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMG 212
              +  +  LT L LLD+      +      ++ L  +  + + 
Sbjct: 102 SDKIPNLSGLTSLTLLDISHS-AHDDSILTKINTLPKVNSIDLS 144

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 3/68 (4%)

Query: 105 KFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLR 164
                + +V  I+ SY   ++    L  L  L++L++    + D   I D  KL  L   
Sbjct: 130 TKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAF 189

Query: 165 G---SDIK 169
                  K
Sbjct: 190 SQTIGGKK 197

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 60.8 bits (148), Expect = 2e-10
 Identities = 22/119 (18%), Positives = 49/119 (41%), Gaps = 9/119 (7%)

Query: 101 TIPNKFFERMIQVRVINFSYMNL--LSLPSSLGLLSNLQNLSLYNCKL--LDITVIRDLK 156
           ++  + F+   Q+ +++ ++  L      S    L  L+ L+L +  L      +   L 
Sbjct: 390 SLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLP 449

Query: 157 KLAVLCLRGSDIKRLPVEV----GELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYM 211
            L  L L+G+   +  ++       L  L +L L  C +L  I  +  ++L  +  + +
Sbjct: 450 ALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC-DLSSIDQHAFTSLKMMNHVDL 507

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 60.8 bits (148), Expect = 2e-10
 Identities = 31/152 (20%), Positives = 60/152 (39%), Gaps = 12/152 (7%)

Query: 99  SLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNL---SLYNCKLLDIT--VIR 153
            L +     E +  +R ++ S+ ++ +       L NL +L   +L   + L +     +
Sbjct: 338 RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK 397

Query: 154 DLKKLAVLCLRGSDIKRLPVEV--GELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYM 211
           +  +L +L L  + +K    +     L LL++L+L     L++    +   L  L+ L +
Sbjct: 398 ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS-LLDISSEQLFDGLPALQHLNL 456

Query: 212 GPRSFDKWEVEVEGVKNASLHELKHLISLELQ 243
               F     +    K  SL  L  L  L L 
Sbjct: 457 QGNHF----PKGNIQKTNSLQTLGRLEILVLS 484

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.6 bits (137), Expect = 5e-09
 Identities = 30/153 (19%), Positives = 49/153 (32%), Gaps = 15/153 (9%)

Query: 114 RVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKL--LDITVIRDLKKLAVLCLRGSDIKRL 171
           +  N   + L  +P    L ++ + L      L  +  T    L  L  L L    I  +
Sbjct: 15  KTYNCENLGLNEIPG--TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI 72

Query: 172 PVEV-GELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNAS 230
             +       L  L L     L  +    LS    L+ L+         +  +  +    
Sbjct: 73  HEDTFQSQHRLDTLVLTAN-PLIFMAETALSGPKALKHLFFI-------QTGISSIDFIP 124

Query: 231 LHELKHLISLELQIQDVNTFPRGLF--LEKLET 261
           LH  K L SL L    +++         EKL+ 
Sbjct: 125 LHNQKTLESLYLGSNHISSIKLPKGFPTEKLKV 157

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.2 bits (136), Expect = 7e-09
 Identities = 23/104 (22%), Positives = 39/104 (37%), Gaps = 5/104 (4%)

Query: 113 VRVINFSYMNLLSL-PSSLGLLSNLQNLSLYNCKLLDI--TVIRDLKKLAVLCLRGSDIK 169
              + FS+  L ++  ++   L NL  L L  C++  I     +   +L  L L  + + 
Sbjct: 35  TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLI 94

Query: 170 RLPVEV-GELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMG 212
            +          L+ L       +  I    L N   LE LY+G
Sbjct: 95  FMAETALSGPKALKHLFFIQTG-ISSIDFIPLHNQKTLESLYLG 137

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 53.5 bits (129), Expect = 5e-08
 Identities = 39/193 (20%), Positives = 65/193 (33%), Gaps = 39/193 (20%)

Query: 101 TIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKL-------------- 146
            I +  F     ++ ++ +  +L  LPS L  LS L+ L L   K               
Sbjct: 268 NISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSL 327

Query: 147 --LDIT-----------VIRDLKKLAVLCLRGSDIKRLPVEVGE---LTLLRLLDLRDCM 190
             L I             + +L+ L  L L   DI+       +   L+ L+ L+L    
Sbjct: 328 THLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN- 386

Query: 191 ELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTF 250
           E   +          LE L +   +F + +V+      +    L  L  L L    ++  
Sbjct: 387 EPLSLKTEAFKECPQLELLDL---AFTRLKVKDA---QSPFQNLHLLKVLNLSHSLLDIS 440

Query: 251 PRGLF--LEKLET 261
              LF  L  L+ 
Sbjct: 441 SEQLFDGLPALQH 453

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 23/119 (19%), Positives = 46/119 (38%), Gaps = 9/119 (7%)

Query: 101 TIPNKFFERMIQVRVINFSYMNL----LSLPSSLGLLSNLQNLSLYNCKLLDIT--VIRD 154
               + F+ +  ++ +N    +     +   +SL  L  L+ L L  C L  I       
Sbjct: 439 ISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTS 498

Query: 155 LKKLAVLCLRGSDIKRLPVEV-GELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMG 212
           LK +  + L  + +    +E    L  + L +L     + +I P++L  LS    + + 
Sbjct: 499 LKMMNHVDLSHNRLTSSSIEALSHLKGIYL-NLASNH-ISIILPSLLPILSQQRTINLR 555

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 26/187 (13%), Positives = 55/187 (29%), Gaps = 26/187 (13%)

Query: 101 TIPNKFFERMIQVRVINFSYMNLLSLP-SSLGLLSNLQNLSLYNCKLLDIT--VIRDLKK 157
           +I          +  +     ++ S+          L+ L   N  +  ++   +  L++
Sbjct: 119 SIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQ 178

Query: 158 LAVLCLRGSD--IKRLPVEVGELTLLRLLDLRDCMELEVIPPNI-LSNLSHLEELYMG-- 212
              L L  +   I  +     +  + + L+      L VI   +  S +  L        
Sbjct: 179 ATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDM 238

Query: 213 ------PRSFDKWEV-----------EVEGVKNASLHELKHLISLELQIQDVNTFPRGLF 255
                 P  F+                   + + + H    L  L+L    ++  P GL 
Sbjct: 239 DDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLV 298

Query: 256 -LEKLET 261
            L  L+ 
Sbjct: 299 GLSTLKK 305

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 60.1 bits (145), Expect = 3e-10
 Identities = 43/207 (20%), Positives = 77/207 (37%), Gaps = 30/207 (14%)

Query: 105 KFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLR 164
           +  + +  V  +  +   L  +   L  L NL  L L   K+ D++ ++DLKKL  L L 
Sbjct: 59  QGIQYLPNVTKLFLNGNKLTDI-KPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLE 117

Query: 165 GSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVE 224
            + I  +   +  L  L  L L +  ++  I    LS L+ L+ L             +E
Sbjct: 118 HNGISDING-LVHLPQLESLYLGNN-KITDITV--LSRLTKLDTLS------------LE 161

Query: 225 GVKNASLHELKHLISLEL------QIQDVNTFPRGLFLEKLETFKILIGGVWGWEYADIW 278
             + + +  L  L  L+        I D+        L+ LE F                
Sbjct: 162 DNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQEC-------LNKPI 214

Query: 279 CREFKIDLDSKIRLKDGLILKLEGIED 305
             +  + + + ++  DG ++  E I D
Sbjct: 215 NHQSNLVVPNTVKNTDGSLVTPEIISD 241

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 55.1 bits (132), Expect = 1e-08
 Identities = 32/172 (18%), Positives = 65/172 (37%), Gaps = 9/172 (5%)

Query: 107 FERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGS 166
            + + +++ ++  + N +S  + L  L  L++L L N K+ DITV+  L KL  L L  +
Sbjct: 105 LKDLKKLKSLSLEH-NGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDN 163

Query: 167 DIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGV 226
            I  +   +  LT L+ L L     +  +    L+ L +L+ L +  +      +     
Sbjct: 164 QISDIV-PLAGLTKLQNLYLSKN-HISDLRA--LAGLKNLDVLELFSQECLNKPIN---- 215

Query: 227 KNASLHELKHLISLELQIQDVNTFPRGLFLEKLETFKILIGGVWGWEYADIW 278
             ++L     + + +  +            EK      L        +    
Sbjct: 216 HQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQ 267

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 54.7 bits (131), Expect = 2e-08
 Identities = 16/106 (15%), Positives = 41/106 (38%), Gaps = 5/106 (4%)

Query: 107 FERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGS 166
            +   +    N      ++   +   L+++  +   N  +  +  I+ L  +  L L G+
Sbjct: 17  DDAFAETIKDNLKK-KSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGN 75

Query: 167 DIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMG 212
            +  +   +  L  L  L L +  +++ +    L +L  L+ L + 
Sbjct: 76  KLTDIK-PLTNLKNLGWLFLDEN-KIKDLSS--LKDLKKLKSLSLE 117

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 42.8 bits (100), Expect = 1e-04
 Identities = 20/132 (15%), Positives = 53/132 (40%), Gaps = 19/132 (14%)

Query: 136 LQNLSLYNCKLLDITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVI 195
           +      +  +  I       +     L+   +    V   EL  +  +   +  +++ +
Sbjct: 1   MGETITVSTPIKQIFPDDAFAETIKDNLKKKSVTDA-VTQNELNSIDQIIANNS-DIKSV 58

Query: 196 PPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLEL---QIQDVNTFPR 252
               +  L ++ +L++   + +K    +  +K   L  LK+L  L L   +I+D+++   
Sbjct: 59  QG--IQYLPNVTKLFL---NGNK----LTDIKP--LTNLKNLGWLFLDENKIKDLSSLKD 107

Query: 253 GLFLEKLETFKI 264
              L+KL++  +
Sbjct: 108 ---LKKLKSLSL 116

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 59.0 bits (143), Expect = 4e-10
 Identities = 38/160 (23%), Positives = 62/160 (38%), Gaps = 29/160 (18%)

Query: 114 RVINFSYMNLLSLPSS-LGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGSDIKRLP 172
            +++ S   L +   + L   + L  L+L   +L  + V   L  L  L L  + ++ LP
Sbjct: 34  TILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLP 93

Query: 173 VEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMG--------PRSFDKWEVEVE 224
           +    L  L +LD+     L  +P   L  L  L+ELY+         P           
Sbjct: 94  LLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP------ 146

Query: 225 GVKNASLHELKHLISLEL-QIQDVNTFPRGLF--LEKLET 261
                   +L+ L SL    + ++   P GL   LE L+T
Sbjct: 147 ------TPKLEKL-SLANNNLTEL---PAGLLNGLENLDT 176

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 57.4 bits (139), Expect = 1e-09
 Identities = 28/108 (25%), Positives = 50/108 (46%), Gaps = 4/108 (3%)

Query: 107 FERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKL--LDITVIRDLKKLAVLCLR 164
              +  +  ++ S+  L SLP     L  L  L +   +L  L +  +R L +L  L L+
Sbjct: 73  DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132

Query: 165 GSDIKRLPVEV-GELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYM 211
           G+++K LP  +      L  L L +   L  +P  +L+ L +L+ L +
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLL 179

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 59.3 bits (144), Expect = 4e-10
 Identities = 28/167 (16%), Positives = 60/167 (35%), Gaps = 23/167 (13%)

Query: 101 TIPNKFFERMIQVRVINFSYMNLLSLPS-SLGLLSNLQNLSLYNCKL--LDITVIRDLKK 157
            +P    +   QV ++N + + +  + + +      +Q L +    +  L   V +++  
Sbjct: 59  KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 118

Query: 158 LAVLCLRGSDIKRLPVEV-GELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSF 216
           L VL L  +D+  LP  +      L  L + +   LE I  +     + L+ L +     
Sbjct: 119 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLS---- 173

Query: 217 DKWEVEVEGVKNA----SLHELKHLISLELQIQDVNTFPRGLFLEKL 259
                      N      L  +  L    +    ++T    + +E+L
Sbjct: 174 ----------SNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEEL 210

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 18/107 (16%), Positives = 40/107 (37%), Gaps = 7/107 (6%)

Query: 101 TIPNKFFERMIQVRVINFSYMNLLSLPSS-LGLLSNLQNLSLYNCKLLDITVIRDLKKLA 159
           ++P   F    ++  ++ S  NL  +        ++LQNL L + +L  +  +  +  L 
Sbjct: 131 SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD-LSLIPSLF 189

Query: 160 VLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHL 206
              +  + +  L         +  LD      + V+   +   L+ L
Sbjct: 190 HANVSYNLLSTLA----IPIAVEELDASHN-SINVVRGPVNVELTIL 231

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 50.0 bits (120), Expect = 5e-07
 Identities = 21/131 (16%), Positives = 42/131 (32%), Gaps = 26/131 (19%)

Query: 101 TIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAV 160
            I +  F+    ++ +  S   L  +   L L+ +L + ++       ++ +     +  
Sbjct: 155 RIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNL---LSTLAIPIAVEE 209

Query: 161 LCLRGSDIKRLPVEV--------------------GELTLLRLLDLRDCMELEVIPPNIL 200
           L    + I  +   V                         L  +DL    ELE I  +  
Sbjct: 210 LDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYN-ELEKIMYHPF 268

Query: 201 SNLSHLEELYM 211
             +  LE LY+
Sbjct: 269 VKMQRLERLYI 279

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 28/145 (19%), Positives = 60/145 (41%), Gaps = 15/145 (10%)

Query: 123 LLSLPSSLGLLSNLQNLSLYNCKLLDITVI---RDLKKLAVLCLRGSDIKRLPVEV-GEL 178
              + S+L       ++ + + +  D+        L    ++  + S +++LP  +    
Sbjct: 10  YKCIDSNLQYDCVFYDVHI-DMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSF 68

Query: 179 TLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLI 238
             + LL+L D  ++E I     +    +++LYM    F+     +  +       +  L 
Sbjct: 69  RQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYM---GFNA----IRYLPPHVFQNVPLLT 120

Query: 239 SLELQIQDVNTFPRGLF--LEKLET 261
            L L+  D+++ PRG+F    KL T
Sbjct: 121 VLVLERNDLSSLPRGIFHNTPKLTT 145

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 22/115 (19%), Positives = 40/115 (34%), Gaps = 7/115 (6%)

Query: 101 TIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITV-IRDLKKLA 159
            I    F +M ++  +  S   L++L      +  L+ L L +  LL +        +L 
Sbjct: 262 KIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLE 321

Query: 160 VLCLRGSDIKRLPVEVGELTLLRLLDLRD----CMELEVIPPNILSNLSHLEELY 210
            L L  + I  L +       L+ L L      C  L  +  N+        + +
Sbjct: 322 NLYLDHNSIVTLKLST--HHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQH 374

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 47.0 bits (112), Expect = 4e-06
 Identities = 15/107 (14%), Positives = 40/107 (37%), Gaps = 5/107 (4%)

Query: 107 FERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGS 166
               I V  ++ S+ ++  +     +   L  L L +  L D   + +   L  + L  +
Sbjct: 201 LAIPIAVEELDASHNSINVVRG--PVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYN 258

Query: 167 DIKRLPVEV-GELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMG 212
           +++++      ++  L  L + +   L  +       +  L+ L + 
Sbjct: 259 ELEKIMYHPFVKMQRLERLYISN-NRLVALNLYG-QPIPTLKVLDLS 303

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 59.7 bits (145), Expect = 5e-10
 Identities = 21/104 (20%), Positives = 44/104 (42%), Gaps = 4/104 (3%)

Query: 112 QVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDIT---VIRDLKKLAVLCLRGSDI 168
            +R ++ S+   + + ++   L  LQ+L   +  L  +T       L+KL  L +  ++ 
Sbjct: 377 SLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT 436

Query: 169 KRLPVEV-GELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYM 211
           K     +   LT L  L +      +    N+ +N ++L  L +
Sbjct: 437 KIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDL 480

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 58.5 bits (142), Expect = 1e-09
 Identities = 26/104 (25%), Positives = 41/104 (39%), Gaps = 5/104 (4%)

Query: 113 VRVINFSYMNLLSLP-SSLGLLSNLQNLSLYNCKLLDI--TVIRDLKKLAVLCLRGSDIK 169
            + I+ S+  L  L   S    S LQ L L  C++  I       L  L+ L L G+ I+
Sbjct: 34  TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ 93

Query: 170 RLPVEV-GELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMG 212
                    LT L  L   +  +L  +    +  L  L++L + 
Sbjct: 94  SFSPGSFSGLTSLENLVAVET-KLASLESFPIGQLITLKKLNVA 136

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 20/117 (17%), Positives = 40/117 (34%), Gaps = 6/117 (5%)

Query: 101 TIPNKFFERMIQVRVINFSYMNLLS--LPSSLGLLSNLQNLSLYNCKLLDIT--VIRDLK 156
              +  F  +  +  +  +  +     L +     +NL  L L  C+L  I+  V   L 
Sbjct: 438 IDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLH 497

Query: 157 KLAVLCLRGSDIKRLPVEV-GELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMG 212
           +L +L +  +++  L      +L  L  LD      +E     +      L    + 
Sbjct: 498 RLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLT 553

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 53.9 bits (130), Expect = 4e-08
 Identities = 27/151 (17%), Positives = 61/151 (40%), Gaps = 11/151 (7%)

Query: 101 TIPNKFFERMIQVRVINFSYMNLLS---LPSSLGLLSNLQNLSLYNCKL--LDITVIRDL 155
           ++ +    ++I ++ +N ++ N +    LP+    L+NL ++ L    +  + +  ++ L
Sbjct: 118 SLESFPIGQLITLKKLNVAH-NFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFL 176

Query: 156 KKLA----VLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYM 211
           ++       L +  + I  +  +  +   L  L LR       I    L NL+ L    +
Sbjct: 177 RENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRL 236

Query: 212 GPRSFDKWEVEVEGVKNASLHELKHLISLEL 242
               F K E  +E  + + +  L  +   E 
Sbjct: 237 ILGEF-KDERNLEIFEPSIMEGLCDVTIDEF 266

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 30/163 (18%), Positives = 54/163 (33%), Gaps = 15/163 (9%)

Query: 107 FERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGS 166
             +  + + ++     L   P+    L  L++L+L   K         L  L+ L L  +
Sbjct: 303 VPKHFKWQSLSIIRCQLKQFPTLD--LPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRN 360

Query: 167 DIKRLPVEVGE---LTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEV 223
            +               LR LDL       +I       L  L+ L          +   
Sbjct: 361 ALSFSGCCSYSDLGTNSLRHLDLSFN--GAIIMSANFMGLEELQHLDF---QHSTLKRVT 415

Query: 224 EGVKNASLHELKHLISLELQIQDVNTFPRGLF--LEKLETFKI 264
           E    ++   L+ L+ L++   +      G+F  L  L T K+
Sbjct: 416 E---FSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKM 455

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 19/114 (16%), Positives = 36/114 (31%), Gaps = 8/114 (7%)

Query: 101 TIPNKFFERM--IQVRVINFSYMNLLSL-PSSLGLLSNLQNLSLYNCKLLDITVIRDLKK 157
                  E +  + +     +Y N  S        L+N+  +SL    +  +  +    K
Sbjct: 249 IFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFK 308

Query: 158 LAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYM 211
              L +    +K+ P    +L  L+ L L       +        L  L  L +
Sbjct: 309 WQSLSIIRCQLKQFP--TLDLPFLKSLTLTMNK-GSISFK--KVALPSLSYLDL 357

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 58.5 bits (142), Expect = 6e-10
 Identities = 52/175 (29%), Positives = 80/175 (45%), Gaps = 30/175 (17%)

Query: 101 TIPNKFFERMIQVRVINFSYMNLLSLPSSL-GLLSNLQNLSLYNCKL--LDITVIRDLKK 157
           ++P+K F R+ ++R++  +   L +LP+ +   L NL+ L + + KL  L I V   L  
Sbjct: 51  SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVN 110

Query: 158 LAVLCLRGSDIKRLPVEV-GELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMG---- 212
           LA L L  + +K LP  V   LT L  L L    EL+ +P  +   L+ L+EL +     
Sbjct: 111 LAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYNNQL 169

Query: 213 ----PRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRGLF--LEKLET 261
                 +FDK               L  L +L+L    +   P G F  LEKL+ 
Sbjct: 170 KRVPEGAFDK---------------LTELKTLKLDNNQLKRVPEGAFDSLEKLKM 209

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 52.3 bits (126), Expect = 5e-08
 Identities = 42/157 (26%), Positives = 69/157 (43%), Gaps = 33/157 (21%)

Query: 119 SYMNLLSLPSSLGLLSNLQNLSLYNCKL--LDITVIRDLKKLAVLCLRGSDIKRLPVEV- 175
           S   L ++PS   + ++ + L L + KL  L       L KL +L L  + ++ LP  + 
Sbjct: 24  SSKKLTAIPS--NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIF 81

Query: 176 GELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMG--------PRSFDKWEVEVEGVK 227
            EL  L  L + D  +L+ +P  +   L +L EL +         PR FD          
Sbjct: 82  KELKNLETLWVTDN-KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS--------- 131

Query: 228 NASLHELKHLISLEL-QIQDVNTFPRGLF--LEKLET 261
              L +L +L SL   ++Q +   P+G+F  L  L+ 
Sbjct: 132 ---LTKLTYL-SLGYNELQSL---PKGVFDKLTSLKE 161

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 58.9 bits (143), Expect = 9e-10
 Identities = 26/143 (18%), Positives = 57/143 (39%), Gaps = 5/143 (3%)

Query: 73  QTNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGL 132
           +       V+ P LE L +  +  S         F     ++ ++ S+  ++++ S+   
Sbjct: 336 KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDF-GTTSLKYLDLSFNGVITMSSNFLG 394

Query: 133 LSNLQNLSLYNCKLLDIT---VIRDLKKLAVLCLRGSDIKRLPVEV-GELTLLRLLDLRD 188
           L  L++L   +  L  ++   V   L+ L  L +  +  +     +   L+ L +L +  
Sbjct: 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 454

Query: 189 CMELEVIPPNILSNLSHLEELYM 211
               E   P+I + L +L  L +
Sbjct: 455 NSFQENFLPDIFTELRNLTFLDL 477

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 58.1 bits (141), Expect = 1e-09
 Identities = 30/154 (19%), Positives = 54/154 (35%), Gaps = 13/154 (8%)

Query: 115 VINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDI--TVIRDLKKLAVLCLRGSDIKRL- 171
                 +N   +P    L  + +NL L    L  +         +L VL L   +I+ + 
Sbjct: 11  TYQCMELNFYKIPD--NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 68

Query: 172 PVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASL 231
                 L+ L  L L     ++ +     S LS L++L          E  +  ++N  +
Sbjct: 69  DGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAV-------ETNLASLENFPI 120

Query: 232 HELKHLISLELQIQDVNTFPRGLFLEKLETFKIL 265
             LK L  L +    + +F    +   L   + L
Sbjct: 121 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 154

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 57.3 bits (139), Expect = 3e-09
 Identities = 23/116 (19%), Positives = 48/116 (41%), Gaps = 4/116 (3%)

Query: 101 TIPNKFFERMIQVRVINFSYMNLLSL-PSSLGLLSNLQNLSLYNCKLLDI--TVIRDLKK 157
            + +  F    +++V++ S   + ++   +   LS+L  L L    +  +       L  
Sbjct: 42  HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101

Query: 158 LAVLCLRGSDIKRL-PVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMG 212
           L  L    +++  L    +G L  L+ L++   +      P   SNL++LE L + 
Sbjct: 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 25/118 (21%), Positives = 41/118 (34%), Gaps = 7/118 (5%)

Query: 101 TIPNKFFERMIQVRVINFSYMNLLS--LPSSLGLLSNLQNLSLYNCKLLDIT--VIRDLK 156
              N  F  +  + V+  +  +     LP     L NL  L L  C+L  ++      L 
Sbjct: 435 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 494

Query: 157 KLAVLCLRGSDIKRLPVEV-GELTLLRLLDLRDCMELEVIPPNILSNL-SHLEELYMG 212
            L VL +  ++   L       L  L++LD      +       L +  S L  L + 
Sbjct: 495 SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH-IMTSKKQELQHFPSSLAFLNLT 551

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 18/115 (15%), Positives = 38/115 (33%), Gaps = 8/115 (6%)

Query: 101 TIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRD----LK 156
             P    + +   + + F+     +  S + L  +L+ L L    L              
Sbjct: 318 QFPTLKLKSL---KRLTFTSNKGGNAFSEVDL-PSLEFLDLSRNGLSFKGCCSQSDFGTT 373

Query: 157 KLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYM 211
            L  L L  + +  +      L  L  LD +     ++   ++  +L +L  L +
Sbjct: 374 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 58.2 bits (141), Expect = 1e-09
 Identities = 28/155 (18%), Positives = 64/155 (41%), Gaps = 14/155 (9%)

Query: 113 VRVINFSYMNLLSLPS-SLGLLSNLQNLSLYNCKLLDIT--VIRDLKKLAVLCLRGSDIK 169
            R+++     + +L         +L+ L L    +  +      +L  L  L LR + +K
Sbjct: 34  TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK 93

Query: 170 RLPVEV-GELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKN 228
            +P+ V   L+ L  LD+ +  ++ ++   +  +L +L+ L +G       + ++  + +
Sbjct: 94  LIPLGVFTGLSNLTKLDISEN-KIVILLDYMFQDLYNLKSLEVG-------DNDLVYISH 145

Query: 229 ASLHELKHLISLELQIQDVNTFPRGLF--LEKLET 261
            +   L  L  L L+  ++ + P      L  L  
Sbjct: 146 RAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIV 180

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 55.9 bits (135), Expect = 8e-09
 Identities = 32/170 (18%), Positives = 66/170 (38%), Gaps = 14/170 (8%)

Query: 101 TIPNKFFERMIQVRVINFSYMNLLSLPS-SLGLLSNLQNLSLYNCKLLDI--TVIRDLKK 157
           +IP +    +  + V+   ++N+ ++   S   L  L+ L + +   LD           
Sbjct: 166 SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN 225

Query: 158 LAVLCLRGSDIKRLPVEV-GELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSF 216
           L  L +   ++  +P      L  LR L+L     +  I  ++L  L  L+E+ +     
Sbjct: 226 LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSY-NPISTIEGSMLHELLRLQEIQL---VG 281

Query: 217 DKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRGLF--LEKLETFKI 264
            +    +  V+  +   L +L  L +    + T    +F  +  LET  +
Sbjct: 282 GQ----LAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLIL 327

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 22/154 (14%), Positives = 52/154 (33%), Gaps = 12/154 (7%)

Query: 101 TIPNKFFERMIQVRVINFSYMNL--LSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKL 158
            + +       +V+ ++     +  ++          L++L+L    + D+       KL
Sbjct: 134 MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKL 193

Query: 159 AVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMG------ 212
             L L  + +  +  E      +  + LR+  +L +I   +     +LE   +       
Sbjct: 194 KTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKAL-RFSQNLEHFDLRGNGFHC 251

Query: 213 --PRSFDKWEVEVEGVKNASLHELKHLISLELQI 244
              R F      V+ V   ++ +L      E  +
Sbjct: 252 GTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTV 285

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 54.6 bits (132), Expect = 1e-08
 Identities = 14/107 (13%), Positives = 36/107 (33%), Gaps = 6/107 (5%)

Query: 101 TIPNKFFERMIQVRVINFSYMNLLSLP-SSLGLLSNLQNLSLYNCKLLDITVIRDLKKLA 159
                  +    V+ ++ S   L  +  + L   + L+ L+L +  L +   +  L  L 
Sbjct: 24  QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLR 83

Query: 160 VLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHL 206
            L L  + ++ L         +  L   +   +  +  +      ++
Sbjct: 84  TLDLNNNYVQELL----VGPSIETLHAANN-NISRVSCSRGQGKKNI 125

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 46.5 bits (111), Expect = 6e-06
 Identities = 18/142 (12%), Positives = 42/142 (29%), Gaps = 24/142 (16%)

Query: 125 SLPSSLGLLSNLQNLSLYNCKL--LDITVIRDLKKLAVLCLRGSDIKRLPVEV-GELTLL 181
           ++       +  +   + +  L     ++ +    +  L L G+ + ++        T L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 182 RLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKN--ASLHELKHLIS 239
            LL+L     L       L +LS L  L +                N    L     + +
Sbjct: 61  ELLNLSSN-VLYETLD--LESLSTLRTLDLN--------------NNYVQELLVGPSIET 103

Query: 240 LELQIQDVNTFPRGLF--LEKL 259
           L     +++          + +
Sbjct: 104 LHAANNNISRVSCSRGQGKKNI 125

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 57.8 bits (140), Expect = 2e-09
 Identities = 25/121 (20%), Positives = 52/121 (42%), Gaps = 5/121 (4%)

Query: 101 TIPNKFFERMIQVRVINFSYMNLLSLPS-SLGLLSNLQNLSLYNCKL--LDITVIRDLKK 157
            +    F     +  +  +   +  +   +   L++L  L+L    L  +D  +  +L K
Sbjct: 289 ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDK 348

Query: 158 LAVLCLRGSDIKRLPVEV-GELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSF 216
           L VL L  + I+ L  +    L  L+ L L    +L+ +P  I   L+ L+++++    +
Sbjct: 349 LEVLDLSYNHIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPW 407

Query: 217 D 217
           D
Sbjct: 408 D 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 54.4 bits (131), Expect = 2e-08
 Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 6/105 (5%)

Query: 113 VRVINFSYMNLLSLPS-SLGLLSNLQNLSLYNCKL---LDITVIRDLKKLAVLCLRGSDI 168
           V  ++ S  ++  L   S   L +LQ L +        +     R L  L +L L  +  
Sbjct: 32  VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91

Query: 169 KRLPVEV-GELTLLRLLDLRDC-MELEVIPPNILSNLSHLEELYM 211
            +L       L  L +L L  C ++  V+  N    L+ LE L +
Sbjct: 92  LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVL 136

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 56.2 bits (136), Expect = 4e-09
 Identities = 24/107 (22%), Positives = 52/107 (48%), Gaps = 5/107 (4%)

Query: 106 FFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRG 165
               +  +  ++     + ++   +  L+NL  L L + ++ D+  +++L K+  L L G
Sbjct: 36  TQADLDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSG 94

Query: 166 SDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMG 212
           + +K +   +  L  ++ LDL      +V P   L+ LS+L+ LY+ 
Sbjct: 95  NPLKNVS-AIAGLQSIKTLDLTSTQITDVTP---LAGLSNLQVLYLD 137

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 52.8 bits (127), Expect = 5e-08
 Identities = 24/132 (18%), Positives = 49/132 (37%), Gaps = 16/132 (12%)

Query: 122 NLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLL 181
           + ++   +   L  +  LS +   +  I  ++ L  L  L L+ + I  L   +  LT +
Sbjct: 29  SNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLA-PLKNLTKI 87

Query: 182 RLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLE 241
             L+L     L+ +    ++ L  ++ L +                   L  L +L  L 
Sbjct: 88  TELELSGN-PLKNVSA--IAGLQSIKTLDLTSTQITDVT---------PLAGLSNLQVLY 135

Query: 242 L---QIQDVNTF 250
           L   QI +++  
Sbjct: 136 LDLNQITNISPL 147

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 52.8 bits (127), Expect = 5e-08
 Identities = 25/105 (23%), Positives = 52/105 (49%), Gaps = 5/105 (4%)

Query: 107 FERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGS 166
              +  ++V+      + ++ S L  L+NLQ LS+ N ++ D+T + +L KL  L    +
Sbjct: 125 LAGLSNLQVLYLDLNQITNI-SPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDN 183

Query: 167 DIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYM 211
            I  +   +  L  L  + L++  ++  + P  L+N S+L  + +
Sbjct: 184 KISDIS-PLASLPNLIEVHLKNN-QISDVSP--LANTSNLFIVTL 224

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 52.0 bits (125), Expect = 9e-08
 Identities = 28/126 (22%), Positives = 51/126 (40%), Gaps = 16/126 (12%)

Query: 128 SSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLR 187
                L+N   ++     + D     DL  +  L   G+ +  +   V  L  L  L+L+
Sbjct: 13  FPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELK 71

Query: 188 DCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLEL---QI 244
           D  ++  + P  L NL+ + EL +   S +  +  V  +       L+ + +L+L   QI
Sbjct: 72  DN-QITDLAP--LKNLTKITELEL---SGNPLK-NVSAIAG-----LQSIKTLDLTSTQI 119

Query: 245 QDVNTF 250
            DV   
Sbjct: 120 TDVTPL 125

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 19/96 (19%), Positives = 38/96 (39%), Gaps = 3/96 (3%)

Query: 107 FERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGS 166
              + ++  +     N +S  S L  L NL  + L N ++ D++ + +   L ++ L   
Sbjct: 169 LANLSKLTTLKADD-NKISDISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQ 227

Query: 167 DIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSN 202
            I   PV      L+    ++       I P  +S+
Sbjct: 228 TITNQPVFYNN-NLVVPNVVKG-PSGAPIAPATISD 261

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 56.4 bits (136), Expect = 4e-09
 Identities = 34/161 (21%), Positives = 52/161 (32%), Gaps = 32/161 (19%)

Query: 119 SYMNLLSLPSSLGLLSNLQNLSLYNCKLLDI---TVIRDLKKLAVLCLRGSDIKRLPVEV 175
           S   L ++P    L S    L L +  L  +        L  L  L L  + +  +  E 
Sbjct: 26  SKQQLPNVPQ--SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEA 83

Query: 176 -GELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMG--------PRSFDKWEVEVEGV 226
              +  LR LDL     L  +   + S+L  LE L +           +F+         
Sbjct: 84  FVPVPNLRYLDLSSN-HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFED-------- 134

Query: 227 KNASLHELKHLISLELQIQDVNTFPRGLF--LEKLETFKIL 265
                  +  L  L L    ++ FP  L     KL    +L
Sbjct: 135 -------MAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLL 168

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 50.6 bits (121), Expect = 3e-07
 Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 8/117 (6%)

Query: 101 TIPNKFFERMIQVRVINFSYMNLLSLPS-SLGLLSNLQNLSLYNCKLLDIT--VIRDLKK 157
            I ++ F  +  +R ++ S  +L +L       L  L+ L LYN  ++ +      D+ +
Sbjct: 78  FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQ 137

Query: 158 LAVLCLRGSDIKRLPVEV----GELTLLRLLDLRDCMELEVIPPNILSNLSHLEELY 210
           L  L L  + I R PVE+     +L  L LLDL     L+ +P   L  L    +  
Sbjct: 138 LQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK-LKKLPLTDLQKLPAWVKNG 193

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 56.8 bits (138), Expect = 4e-09
 Identities = 22/108 (20%), Positives = 43/108 (39%), Gaps = 8/108 (7%)

Query: 113 VRVINFSYMNL----LSLPSSLGLLSNLQNLSLYNCKLL-DITVIRDLKKLAVLCLRGSD 167
           V  I+ S   L     ++ SSL  L+ L++L L N  +   ++  +    L  L L  + 
Sbjct: 52  VTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNS 111

Query: 168 IK-RLP--VEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMG 212
           +   +     +G  + L+ L++           +    L+ LE L + 
Sbjct: 112 LSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLS 159

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 54.1 bits (131), Expect = 3e-08
 Identities = 25/119 (21%), Positives = 42/119 (35%), Gaps = 12/119 (10%)

Query: 101 TIPNKFFERMIQVRVINFSYMNLLS--LPSSLGLLSNLQNLSLYNCKL---LDITVIRDL 155
                      +++++N S  N     +P     L +LQ LSL   K    +   +    
Sbjct: 238 DFSRAIS-TCTELKLLNISS-NQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGAC 293

Query: 156 KKLAVLCLRGSDIK-RLPVEVGELTLLRLLDLRDCMELE-VIPPNILSNLSHLEELYMG 212
             L  L L G+     +P   G  +LL  L L         +P + L  +  L+ L + 
Sbjct: 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN-FSGELPMDTLLKMRGLKVLDLS 351

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 53.4 bits (129), Expect = 6e-08
 Identities = 37/151 (24%), Positives = 60/151 (39%), Gaps = 18/151 (11%)

Query: 101 TIPNKFFERMIQVRVINFSYMNLLS--LPSSLGLLSNLQNLSLYNCKL---LDITVIRDL 155
            IP+        +  ++ S  N     +P   G  S L++L+L +      L +  +  +
Sbjct: 284 EIPDFLSGACDTLTGLDLSG-NHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKM 342

Query: 156 KKLAVLCLRGSDIK-RLPVEVGELTL-LRLLDLRDCMELE-VIPPNILSN-LSHLEELYM 211
           + L VL L  ++    LP  +  L+  L  LDL         I PN+  N  + L+ELY+
Sbjct: 343 RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN-FSGPILPNLCQNPKNTLQELYL 401

Query: 212 GPRSFDKWEVEVEGVKNASLHELKHLISLEL 242
               F        G    +L     L+SL L
Sbjct: 402 QNNGF-------TGKIPPTLSNCSELVSLHL 425

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 17/120 (14%), Positives = 44/120 (36%), Gaps = 9/120 (7%)

Query: 99  SLTIPNKFFERMIQVRVINFSYMNL-LSLPSSL---GLLSNLQNLSLYNCKLLDITVIRD 154
                     ++  + V++ S  ++  +             L++L++   K+     +  
Sbjct: 139 DFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSR 198

Query: 155 LKKLAVLCLRGSDIK-RLPVEVGELTLLRLLDLRDCMELE-VIPPNILSNLSHLEELYMG 212
              L  L +  ++    +P  +G+ + L+ LD+    +L       I S  + L+ L + 
Sbjct: 199 CVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGN-KLSGDFSRAI-STCTELKLLNIS 255

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 7/93 (7%)

Query: 101 TIPNKFFERMIQVRVINFSYMNLLS--LPSSLGLLSNLQNLSLYNCKLLDI--TVIRDLK 156
            IP +    +  +  +   + N L+  +PS L   +NL  +SL N +L       I  L+
Sbjct: 457 EIPQELMY-VKTLETLILDF-NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE 514

Query: 157 KLAVLCLRGSDIK-RLPVEVGELTLLRLLDLRD 188
            LA+L L  +     +P E+G+   L  LDL  
Sbjct: 515 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNT 547

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 44.5 bits (106), Expect = 3e-05
 Identities = 24/116 (20%), Positives = 41/116 (35%), Gaps = 10/116 (8%)

Query: 101 TIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLL-DI-TVIRDLKKL 158
            +      R + +  ++ S  N  +    LG  S LQ+L +   KL  D    I    +L
Sbjct: 193 DVD---VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTEL 249

Query: 159 AVLCLRGSDIK-RLPVEVGELTLLRLLDLRDCMELE-VIPPNILSNLSHLEELYMG 212
            +L +  +     +P     L  L+ L L +       IP  +      L  L + 
Sbjct: 250 KLLNISSNQFVGPIPPL--PLKSLQYLSLAENK-FTGEIPDFLSGACDTLTGLDLS 302

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 43.7 bits (104), Expect = 6e-05
 Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 10/118 (8%)

Query: 101 TIPNKFFERMIQVRVINFSYMNLLS--LPSSLGLLSNLQNLSLYNCKLL-DI-TVIRDLK 156
            IP        ++  ++ S+ N LS  +PSSLG LS L++L L+   L  +I   +  +K
Sbjct: 409 KIPP-TLSNCSELVSLHLSF-NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVK 466

Query: 157 KLAVLCLRGSDIK-RLPVEVGELTLLRLLDLRDCMELE-VIPPNILSNLSHLEELYMG 212
            L  L L  +D+   +P  +   T L  + L +   L   IP  I   L +L  L + 
Sbjct: 467 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR-LTGEIPKWI-GRLENLAILKLS 522

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 41.4 bits (98), Expect = 3e-04
 Identities = 20/123 (16%), Positives = 44/123 (35%), Gaps = 17/123 (13%)

Query: 101 TIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNL---SLYNCKL---LDITVIRD 154
           ++    F+    +  ++ S  +L    ++L  L +   L   ++ +  L     ++    
Sbjct: 92  SVSG--FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLK 149

Query: 155 LKKLAVLCLRGSDI-KRLPVEV---GELTLLRLLDLRDCMELE-VIPPNILSNLSHLEEL 209
           L  L VL L  + I     V          L+ L +    ++   +    +S   +LE L
Sbjct: 150 LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGN-KISGDVD---VSRCVNLEFL 205

Query: 210 YMG 212
            + 
Sbjct: 206 DVS 208

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 56.1 bits (135), Expect = 7e-09
 Identities = 26/138 (18%), Positives = 51/138 (36%), Gaps = 10/138 (7%)

Query: 83  CPQLELLFICADKESSSLTIPNKFFE-----RMIQVRVINFSYMNLLSLPSS-LGLLSNL 136
           C    L + C   +          +       +   +++ F    +  LP++ L     +
Sbjct: 18  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 77

Query: 137 QNLSLYNCKLLDI--TVIRDLKKLAVLCLRGSDIKRLPVEV-GELTLLRLLDLRDCMELE 193
           + L+L + ++ +I          +  L +  + I+ LP  V   + LL +L L    +L 
Sbjct: 78  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLS 136

Query: 194 VIPPNILSNLSHLEELYM 211
            +P  I  N   L  L M
Sbjct: 137 SLPRGIFHNTPKLTTLSM 154

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 49.9 bits (119), Expect = 7e-07
 Identities = 22/131 (16%), Positives = 42/131 (32%), Gaps = 26/131 (19%)

Query: 101 TIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAV 160
            I +  F+    ++ +  S   L  +   L L+ +L + ++    L   + +     +  
Sbjct: 161 RIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLL---STLAIPIAVEE 215

Query: 161 LCLRGSDIKRLPVEV--------------------GELTLLRLLDLRDCMELEVIPPNIL 200
           L    + I  +   V                         L  +DL    ELE I  +  
Sbjct: 216 LDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYN-ELEKIMYHPF 274

Query: 201 SNLSHLEELYM 211
             +  LE LY+
Sbjct: 275 VKMQRLERLYI 285

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 45.3 bits (107), Expect = 2e-05
 Identities = 15/106 (14%), Positives = 40/106 (37%), Gaps = 5/106 (4%)

Query: 107 FERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGS 166
               I V  ++ S+ ++  +     +   L  L L +  L D   + +   L  + L  +
Sbjct: 207 LAIPIAVEELDASHNSINVVRG--PVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYN 264

Query: 167 DIKRLPVEV-GELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYM 211
           +++++      ++  L  L + +   L  +       +  L+ L +
Sbjct: 265 ELEKIMYHPFVKMQRLERLYISNN-RLVALNL-YGQPIPTLKVLDL 308

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 45.3 bits (107), Expect = 2e-05
 Identities = 22/115 (19%), Positives = 40/115 (34%), Gaps = 7/115 (6%)

Query: 101 TIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITV-IRDLKKLA 159
            I    F +M ++  +  S   L++L      +  L+ L L +  LL +        +L 
Sbjct: 268 KIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLE 327

Query: 160 VLCLRGSDIKRLPVEVGELTLLRLLDLRD----CMELEVIPPNILSNLSHLEELY 210
            L L  + I  L   +     L+ L L      C  L  +  N+        + +
Sbjct: 328 NLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQH 380

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 55.6 bits (134), Expect = 9e-09
 Identities = 22/250 (8%), Positives = 65/250 (26%), Gaps = 30/250 (12%)

Query: 101 TIPNKFFERMIQVRVINFSYMNL--LSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKL 158
            + +       +V+ ++     +  ++          L++L+L    + D+       KL
Sbjct: 134 MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKL 193

Query: 159 AVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDK 218
             L L  + +  +  E      +  + LR+  +L +I   +     +LE   +     + 
Sbjct: 194 KTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKAL-RFSQNLEHFDL---RGNG 248

Query: 219 WEVEVEGVKNASLHELKHLISLELQIQDVNTFPRGLFLEKLETFKILIGGVWGWEYADIW 278
           +         +    ++ +    ++                              Y    
Sbjct: 249 FHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLG-------------HYGAYC 295

Query: 279 CREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRG 338
           C +       ++         L   +      LE +  N           ++ + +    
Sbjct: 296 CEDLPAPFADRLIALKRKEHALLSGQGSETERLECEREN----------QARQREIDALK 345

Query: 339 SHLTLNPAES 348
                   + 
Sbjct: 346 EQYRTVIDQV 355

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 53.7 bits (129), Expect = 4e-08
 Identities = 25/179 (13%), Positives = 53/179 (29%), Gaps = 25/179 (13%)

Query: 101 TIPNKFFERMIQVRVINFSYMNLLSL-PSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLA 159
                  +    V+ ++ S   L  +  + L   + L+ L+L +  L +   +  L  L 
Sbjct: 24  QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLR 83

Query: 160 VLCLRGSDIKRLP-----------------VEVGELTLLRLLDLRDCMELEVIPPNILSN 202
            L L  + ++ L                  V        + + L +  ++ ++       
Sbjct: 84  TLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANN-KITMLRDLDEGC 142

Query: 203 LSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRGLFLEKLET 261
            S ++ L +     D                   L  L LQ   +      +   KL+T
Sbjct: 143 RSRVQYLDLKLNEIDTVN------FAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKT 195

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 6/90 (6%)

Query: 125 SLPSSLGLLSNLQNLSLYNCKL--LDITVIRDLKKLAVLCLRGSDIKRLPVEV-GELTLL 181
           ++       +  +   + +  L     ++ +    +  L L G+ + ++        T L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 182 RLLDLRDCMELEVIPPNILSNLSHLEELYM 211
            LL+L     L       L +LS L  L +
Sbjct: 61  ELLNLSSN-VLYETLD--LESLSTLRTLDL 87

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 55.1 bits (133), Expect = 1e-08
 Identities = 43/249 (17%), Positives = 82/249 (32%), Gaps = 31/249 (12%)

Query: 101 TIPNKFFERMIQVRVINFSYMNLLSLPS-SLGLLSNLQNLSLYNCKL--LDITVIRDLKK 157
            I N   +R + ++ +  +   + ++   S   L +L++L L    L  L  +  + L  
Sbjct: 66  YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSS 125

Query: 158 LAVLCLRGSDIKRLPVEV--GELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRS 215
           L  L L G+  K L        LT L++L + +      I     + L+ LEEL +    
Sbjct: 126 LTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185

Query: 216 FDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRGLF--LEKLETFKILIGGVWGWE 273
                      +  SL  ++++  L L ++               +E  ++         
Sbjct: 186 LQS-------YEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLEL--------- 229

Query: 274 YADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKH 333
                 R+  +D      L  G    L          ++  D + F    +    S L  
Sbjct: 230 ------RDTDLDTFHFSELSTGETNSLIKK--FTFRNVKITDESLFQVMKLLNQISGLLE 281

Query: 334 LYIRGSHLT 342
           L    + L 
Sbjct: 282 LEFSRNQLK 290

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 44.0 bits (104), Expect = 4e-05
 Identities = 14/121 (11%), Positives = 44/121 (36%), Gaps = 12/121 (9%)

Query: 101 TIPNKFFERMIQVRVINFSYMNLLSLPS-SLGLLSNLQNLSLYNCKL----------LDI 149
           +   K  + +  V  +       + L    + + S+++ L L +  L           + 
Sbjct: 188 SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGET 247

Query: 150 TVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEEL 209
             +        + +    + ++   + +++ L  L+      L+ +P  I   L+ L+++
Sbjct: 248 NSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ-LKSVPDGIFDRLTSLQKI 306

Query: 210 Y 210
           +
Sbjct: 307 W 307

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 53.9 bits (130), Expect = 2e-08
 Identities = 44/243 (18%), Positives = 89/243 (36%), Gaps = 44/243 (18%)

Query: 107 FERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGS 166
            + +  V+  N    N+ SL + +   +NL+ L L + ++ D++ ++DL KL  L +  +
Sbjct: 37  QKELSGVQNFNGDNSNIQSL-AGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRN 95

Query: 167 DIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGV 226
            +K L         L  L L +  EL       L +L +LE L +               
Sbjct: 96  RLKNL--NGIPSACLSRLFLDNN-ELRDTDS--LIHLKNLEILSIR-------------- 136

Query: 227 KN-----ASLHELKHLISLEL---QIQDVNTFPRGLFLEKLETFKILIGGVWGWEYADIW 278
            N       L  L  L  L+L   +I +     R   +  ++               +  
Sbjct: 137 NNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQKC-------VNEPV 189

Query: 279 CREFKIDLDSKIRLKDGLILKLEGIEDL---------WLSYLEEQDVNYFVNELVKVGPS 329
             + ++ + + ++  DG  +    I +          W   +   +V+Y  +E + VG +
Sbjct: 190 KYQPELYITNTVKDPDGRWISPYYISNGGSYVDGCVLWELPVYTDEVSYKFSEYINVGET 249

Query: 330 QLK 332
           +  
Sbjct: 250 EAI 252

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 4/85 (4%)

Query: 128 SSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLR 187
                L+N    +L    + D+   ++L  +       S+I+ L   +   T L+ L L 
Sbjct: 13  FPDPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLS 71

Query: 188 DCMELEVIPPNILSNLSHLEELYMG 212
              ++  + P  L +L+ LEEL + 
Sbjct: 72  HN-QISDLSP--LKDLTKLEELSVN 93

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 20/105 (19%), Positives = 39/105 (37%), Gaps = 6/105 (5%)

Query: 108 ERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGSD 167
             +      N    ++  L  S   LS +QN +  N  +  +  ++    L  L L  + 
Sbjct: 16  PGLANAVKQNLGKQSVTDL-VSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQ 74

Query: 168 IKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMG 212
           I  L   + +LT L  L +     L+ +    + +   L  L++ 
Sbjct: 75  ISDLS-PLKDLTKLEELSVNRN-RLKNLNG--IPSAC-LSRLFLD 114

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 54.1 bits (131), Expect = 2e-08
 Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 10/112 (8%)

Query: 109 RMIQVRVINFSYMNL---LSLPSSLGLLSNLQNLSLYNCKLL--DI-TVIRDLKKLAVLC 162
           +  +V  ++ S +NL     +PSSL  L  L  L +     L   I   I  L +L  L 
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107

Query: 163 LRGSDIK-RLPVEVGELTLLRLLDLRDCMELE-VIPPNILSNLSHLEELYMG 212
           +  +++   +P  + ++  L  LD      L   +PP+I S+L +L  +   
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNA-LSGTLPPSI-SSLPNLVGITFD 157

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 42.9 bits (102), Expect = 9e-05
 Identities = 23/100 (23%), Positives = 37/100 (37%), Gaps = 11/100 (11%)

Query: 123 LLSLPSSLGLLSNLQN----LSLYNCKLLDIT--VIRDLKKLAVLCLRGSDI---KRLPV 173
           LL +   LG  + L +        N   L +         ++  L L G ++     +P 
Sbjct: 11  LLQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPS 70

Query: 174 EVGELTLLRLLDLRDCMELE-VIPPNILSNLSHLEELYMG 212
            +  L  L  L +     L   IPP I + L+ L  LY+ 
Sbjct: 71  SLANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYIT 109

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 41.0 bits (97), Expect = 3e-04
 Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 20/122 (16%)

Query: 101 TIPNKFFERMIQVRVINFSYMNLLS--LPSSLGLLSNLQNLSLYNCKL-----LDITVIR 153
            IP+ F  ++  +  ++FSY N LS  LP S+  L NL  ++    ++            
Sbjct: 116 AIPD-FLSQIKTLVTLDFSY-NALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFS 173

Query: 154 DLKKLAVL---CLRGSDIKRLPVEVGELTLLRLLDLRDCMELE-VIPPNILSNLSHLEEL 209
            L     +    L G     +P     L L   +DL   M LE         +  + +++
Sbjct: 174 KLFTSMTISRNRLTGK----IPPTFANLNL-AFVDLSRNM-LEGDASVLF-GSDKNTQKI 226

Query: 210 YM 211
           ++
Sbjct: 227 HL 228

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 39.8 bits (94), Expect = 8e-04
 Identities = 19/81 (23%), Positives = 30/81 (37%), Gaps = 13/81 (16%)

Query: 114 RVINFSYMNLLS--LPSSLGLLSNLQNLSLYNCKLL-DITVIRDLKKLAVLCL-----RG 165
             ++ S  N+L        G   N Q + L    L  D+  +   K L  L L      G
Sbjct: 200 AFVDLSR-NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYG 258

Query: 166 SDIKRLPVEVGELTLLRLLDL 186
           +    LP  + +L  L  L++
Sbjct: 259 T----LPQGLTQLKFLHSLNV 275

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 53.5 bits (129), Expect = 3e-08
 Identities = 31/153 (20%), Positives = 66/153 (43%), Gaps = 13/153 (8%)

Query: 113 VRVINFSYMNLLSLP-SSLGLLSNLQNLSLYNCKLLDIT--VIRDLKKLAVLCLRGSDIK 169
             +++     +  +       L NL  L L N K+  I+      L KL  L L  + +K
Sbjct: 54  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 113

Query: 170 RLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNA 229
            LP ++     L+ L + +  E+  +  ++ + L+ +  + +G        ++  G++N 
Sbjct: 114 ELPEKM--PKTLQELRVHEN-EITKVRKSVFNGLNQMIVVELG-----TNPLKSSGIENG 165

Query: 230 SLHELKHLISLELQIQDVNTFPRGLF--LEKLE 260
           +   +K L  + +   ++ T P+GL   L +L 
Sbjct: 166 AFQGMKKLSYIRIADTNITTIPQGLPPSLTELH 198

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 40.0 bits (94), Expect = 7e-04
 Identities = 16/113 (14%), Positives = 36/113 (31%), Gaps = 16/113 (14%)

Query: 101 TIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAV 160
            + N        +R ++ +   L+ +P  L     +Q + L+N  +  I           
Sbjct: 230 AVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAI----------- 278

Query: 161 LCLRGSDIKRLPVEVGELTLLRLLDLRD-CMELEVIPPNILSNLSHLEELYMG 212
               GS+    P    +      + L    ++   I P+    +     + +G
Sbjct: 279 ----GSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLG 327

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 54.0 bits (130), Expect = 4e-08
 Identities = 32/183 (17%), Positives = 60/183 (32%), Gaps = 24/183 (13%)

Query: 101 TIPNKFFERMIQVRVINFSYMNLLSLPS-SLGLLSNLQNLSLYNCKLLDITVIRDLKKLA 159
            + +  F  + +V  I+    ++  +   +   L  LQ L L +  L  I  I  +  + 
Sbjct: 328 ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIF 387

Query: 160 -----------------VLCLRGSDIKRLPVEV--GELTLLRLLDLRDCMELEVIPPNIL 200
                            ++ L  + ++ L +      +  L++L L              
Sbjct: 388 LSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTP 447

Query: 201 SNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRGLF--LEK 258
           S    LE+L++G             +       L HL  L L    +N+ P G+F  L  
Sbjct: 448 SENPSLEQLFLGENMLQ--LAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTA 505

Query: 259 LET 261
           L  
Sbjct: 506 LRG 508

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 52.5 bits (126), Expect = 1e-07
 Identities = 36/253 (14%), Positives = 79/253 (31%), Gaps = 22/253 (8%)

Query: 101 TIPNKFFERMIQVRVINFSYMNLLSL---PSSLGLLSNLQNLSLYNCKL--LDITVIRDL 155
           T+    F  + Q++++         L     +   L NL+ L L + K+  L     + L
Sbjct: 38  TVTASSFPFLEQLQLLELGS-QYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGL 96

Query: 156 KKLAVLCLRGSDIKRLPVEVG---ELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMG 212
             L  L L    +    ++ G    L  L  LDL       +        L+ L+ +   
Sbjct: 97  FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFS 156

Query: 213 PRSFDKWEVEV-EGVKNASLHELKHLISLELQIQDVNTFPRGLFLEKLETFKILIGGVWG 271
                       E ++  +L     L +  L  +    + + +   +    +IL      
Sbjct: 157 SNQIFLVCEHELEPLQGKTLSFF-SLAANSLYSRVSVDWGKCMNPFRNMVLEILDVS--- 212

Query: 272 WEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSY--LEEQDVNYFVNELVKVGPS 329
                          ++  + +   ++    I      +  +++ D N F      +  S
Sbjct: 213 --GNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG----LARS 266

Query: 330 QLKHLYIRGSHLT 342
            ++HL +    + 
Sbjct: 267 SVRHLDLSHGFVF 279

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 51.3 bits (123), Expect = 2e-07
 Identities = 34/156 (21%), Positives = 61/156 (39%), Gaps = 13/156 (8%)

Query: 114 RVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKL--LDITVIRDLKKLAVLCLRGSDIKR- 170
           R+  + + NL  +P  L   +  + L L    +  +  +    L++L +L L        
Sbjct: 7   RIAFYRFCNLTQVPQVL---NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLT 63

Query: 171 LPVEV-GELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNA 229
           +  E    L  LR+LDL    ++  + P+    L HL EL +    F    +    +K+ 
Sbjct: 64  IDKEAFRNLPNLRILDLGSS-KIYFLHPDAFQGLFHLFELRL---YFCG--LSDAVLKDG 117

Query: 230 SLHELKHLISLELQIQDVNTFPRGLFLEKLETFKIL 265
               LK L  L+L    + +        KL + K +
Sbjct: 118 YFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSI 153

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 49.0 bits (117), Expect = 2e-06
 Identities = 29/148 (19%), Positives = 55/148 (37%), Gaps = 19/148 (12%)

Query: 75  NLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLP--SSLGL 132
           N L  +   P +  +F+  +K  +   +P           +I+ S   L +L     L  
Sbjct: 372 NALTTIHFIPSIPDIFLSGNKLVT---LPKINL----TANLIHLSENRLENLDILYFLLR 424

Query: 133 LSNLQNLSLYNCKLLDIT---VIRDLKKLAVLCLRGSDIKRLPVEV------GELTLLRL 183
           + +LQ L L   +    +      +   L  L L  + ++              L+ L++
Sbjct: 425 VPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQV 484

Query: 184 LDLRDCMELEVIPPNILSNLSHLEELYM 211
           L L     L  +PP + S+L+ L  L +
Sbjct: 485 LYLNHN-YLNSLPPGVFSHLTALRGLSL 511

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 47.5 bits (113), Expect = 4e-06
 Identities = 39/186 (20%), Positives = 67/186 (36%), Gaps = 30/186 (16%)

Query: 101 TIPNKFFERMIQVRVINFSYMNLLSLPS-SLGLLSNLQNLSLYNCKL------------- 146
            I ++ F  +  ++V+N SY  L  L S +   L  +  + L    +             
Sbjct: 304 KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEK 363

Query: 147 ---LD-----ITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPN 198
              LD     +T I  +  +  + L G+ +  LP       L+ L + R    LE +   
Sbjct: 364 LQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENR----LENLDIL 419

Query: 199 -ILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRGLF-- 255
             L  + HL+ L +    F     +    +N SL +L  L    LQ+         +F  
Sbjct: 420 YFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQL-FLGENMLQLAWETELCWDVFEG 478

Query: 256 LEKLET 261
           L  L+ 
Sbjct: 479 LSHLQV 484

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 5/107 (4%)

Query: 105 KFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLR 164
           +  + +  V  +  +   L  +   L  L NL  L L   K+ D++ ++DLKKL  L L 
Sbjct: 62  QGIQYLPNVTKLFLNGNKLTDI-KPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLE 120

Query: 165 GSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYM 211
            + I  +   +  L  L  L L +  ++  I    LS L+ L+ L +
Sbjct: 121 HNGISDING-LVHLPQLESLYLGNN-KITDITV--LSRLTKLDTLSL 163

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 26/105 (24%), Positives = 51/105 (48%), Gaps = 5/105 (4%)

Query: 107 FERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGS 166
            + + +++ ++  +  +  + + L  L  L++L L N K+ DITV+  L KL  L L  +
Sbjct: 108 LKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDN 166

Query: 167 DIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYM 211
            I  +   +  LT L+ L L     +  +    L+ L +L+ L +
Sbjct: 167 QISDIV-PLAGLTKLQNLYLSKN-HISDLRA--LAGLKNLDVLEL 207

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 49.7 bits (119), Expect = 5e-07
 Identities = 19/122 (15%), Positives = 47/122 (38%), Gaps = 10/122 (8%)

Query: 96  ESSSLTIPNK-----FFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDIT 150
            S ++T+P         +   +    N      ++   +   L+++  +   N  +  + 
Sbjct: 4   GSETITVPTPIKQIFSDDAFAETIKDNLKK-KSVTDAVTQNELNSIDQIIANNSDIKSVQ 62

Query: 151 VIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELY 210
            I+ L  +  L L G+ +  +   +  L  L  L L +  +++ +    L +L  L+ L 
Sbjct: 63  GIQYLPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDEN-KVKDLSS--LKDLKKLKSLS 118

Query: 211 MG 212
           + 
Sbjct: 119 LE 120

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 52.5 bits (125), Expect = 1e-07
 Identities = 22/109 (20%), Positives = 48/109 (44%), Gaps = 4/109 (3%)

Query: 105 KFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLR 164
              E+++ V  ++ S+  L +LP +L  L  L+ L   +  L ++  + +L +L  L L 
Sbjct: 457 CHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLC 516

Query: 165 GSDIKRLP--VEVGELTLLRLLDLRD--CMELEVIPPNILSNLSHLEEL 209
            + +++      +     L LL+L+     + E I   +   L  +  +
Sbjct: 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 22/117 (18%), Positives = 43/117 (36%), Gaps = 23/117 (19%)

Query: 112 QVRVINFSYMNLLSLPSSLG-----------------LLSNLQNLSLYNCKLLDITVIRD 154
            +  +  S  +L  LP                     L   L+ L + N +L  +  +++
Sbjct: 92  HLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQN 151

Query: 155 LKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYM 211
              L ++ +  + +K+LP        L  +   +  +LE +P   L NL  L  +Y 
Sbjct: 152 SSFLKIIDVDNNSLKKLP---DLPPSLEFIAAGNN-QLEELPE--LQNLPFLTAIYA 202

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 50.0 bits (120), Expect = 6e-07
 Identities = 19/104 (18%), Positives = 41/104 (39%), Gaps = 8/104 (7%)

Query: 107 FERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGS 166
            + +  +  I     +L  LP       +L+++   N  L ++  +++L  L  +    +
Sbjct: 191 LQNLPFLTAIYADNNSLKKLPDLPL---SLESIVAGNNILEELPELQNLPFLTTIYADNN 247

Query: 167 DIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELY 210
            +K LP     L  L + D      L  + P +  +L+ L+   
Sbjct: 248 LLKTLPDLPPSLEALNVRDNY----LTDL-PELPQSLTFLDVSE 286

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 44.2 bits (105), Expect = 4e-05
 Identities = 16/104 (15%), Positives = 29/104 (27%), Gaps = 20/104 (19%)

Query: 122 NLLSLPSSLGLLSNLQNLSLYNCKL-------------LDITVIRDL--KKLAVLCLRGS 166
           NL  +P     + +         +              + ++ +RD   ++   L L   
Sbjct: 22  NLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL 81

Query: 167 DIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELY 210
            +  LP     L  L       C  L  +P     +L  L    
Sbjct: 82  GLSSLPELPPHLESLVA----SCNSLTELPELP-QSLKSLLVDN 120

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 43.4 bits (103), Expect = 7e-05
 Identities = 14/97 (14%), Positives = 31/97 (31%), Gaps = 10/97 (10%)

Query: 114 RVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGSDIKRLPV 173
           + ++  Y  L   P     + +L+     N  L ++      + L  L +  + ++  P 
Sbjct: 360 KQLHVEYNPLREFPDIPESVEDLR----MNSHLAEVP--ELPQNLKQLHVETNPLREFPD 413

Query: 174 EVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELY 210
               +  LR+   R    +             LE+  
Sbjct: 414 IPESVEDLRMNSER----VVDPYEFAHETTDKLEDDV 446

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 40.0 bits (94), Expect = 8e-04
 Identities = 19/104 (18%), Positives = 37/104 (35%), Gaps = 10/104 (9%)

Query: 104 NKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCL 163
           +   E    +  +N S   + SL     L  +L+ L++ N KL+++       +L  L  
Sbjct: 290 SGLSELPPNLYYLNASSNEIRSLC---DLPPSLEELNVSNNKLIELP--ALPPRLERLIA 344

Query: 164 RGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLE 207
             + +  +P     L  L +        L   P     ++  L 
Sbjct: 345 SFNHLAEVPELPQNLKQLHVEYNP----LREFPDIP-ESVEDLR 383

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 26/119 (21%), Positives = 48/119 (40%), Gaps = 8/119 (6%)

Query: 101 TIPNKFFERMIQVRVINFSYMNLLSL--PSSLGLLSNLQNLSLYNCKLL---DITVIRDL 155
           TIP+  F  +  +  I  S    L      S   LS + ++ + N + L   D   +++L
Sbjct: 45  TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKEL 104

Query: 156 KKLAVLCLRGSDIKRLP--VEVGELTLLRLLDLRDCMELEVIPPNILSNL-SHLEELYM 211
             L  L +  + +K  P   +V    +  +L++ D   +  IP N    L +    L +
Sbjct: 105 PLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKL 163

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 19/98 (19%), Positives = 41/98 (41%), Gaps = 7/98 (7%)

Query: 119 SYMNLLSLPSSLGLLSNLQNLSLYNCKLLDI--TVIRDLKKLAVLCLRGSD-IKRLPVEV 175
           +  ++  +PS   L  + Q L L    L  I      +L  ++ + +     +++L    
Sbjct: 19  TCKDIQRIPS---LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHS 75

Query: 176 -GELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMG 212
              L+ +  +++R+   L  I P+ L  L  L+ L + 
Sbjct: 76  FYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIF 113

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 18/134 (13%), Positives = 36/134 (26%), Gaps = 9/134 (6%)

Query: 84  PQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYN 143
            ++  + I   +  +   I     + +  ++ +      L   P    + S      L  
Sbjct: 80  SKVTHIEIRNTRNLTY--IDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEI 137

Query: 144 CKLLDITVIRD------LKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPP 197
                +T I          +   L L  +    +       T L  + L     L VI  
Sbjct: 138 TDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDK 197

Query: 198 NILSNL-SHLEELY 210
           +    + S    L 
Sbjct: 198 DAFGGVYSGPSLLD 211

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 39.6 bits (93), Expect = 8e-04
 Identities = 9/80 (11%), Positives = 28/80 (35%), Gaps = 3/80 (3%)

Query: 134 SNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGSDIKRLPVEV-GELTLLRLLDLRDCMEL 192
              ++  +    +  I  +        L L  + ++ +P      L  +  + +   + L
Sbjct: 11  HQEEDFRVTCKDIQRIPSL--PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTL 68

Query: 193 EVIPPNILSNLSHLEELYMG 212
           + +  +   NLS +  + + 
Sbjct: 69  QQLESHSFYNLSKVTHIEIR 88

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 28/156 (17%), Positives = 50/156 (32%), Gaps = 31/156 (19%)

Query: 119 SYMNLLSLPSSLGLLSNLQNLSLYNCKL--LDITVIRDLKKLAVLCLRGSDIKRLPVEV- 175
               L  +P+   L   +  + L    +  +        KKL  + L  + I  L  +  
Sbjct: 19  RGKGLTEIPT--NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAF 76

Query: 176 GELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMG--------PRSFDKWEVEVEGVK 227
             L  L  L L    ++  +P ++   L  L+ L +           +F           
Sbjct: 77  QGLRSLNSLVLYGN-KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQD--------- 126

Query: 228 NASLHELKHLISLELQIQDVNTFPRGLF--LEKLET 261
                 L +L  L L    + T  +G F  L  ++T
Sbjct: 127 ------LHNLNLLSLYDNKLQTIAKGTFSPLRAIQT 156

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 51.1 bits (123), Expect = 1e-07
 Identities = 27/117 (23%), Positives = 46/117 (39%), Gaps = 8/117 (6%)

Query: 101 TIPNKFFERMIQVRVINFSYMNLLSLPSSL-GLLSNLQNLSLYNCKL--LDITVIRDLKK 157
           TI +  ++ +  +  +  +   + SL       LS+LQ L      L  L+   I  LK 
Sbjct: 66  TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125

Query: 158 LAVLCLRGSDIKRLPVEVG---ELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYM 211
           L  L +  + I+   +       LT L  LDL    +++ I    L  L  +  L +
Sbjct: 126 LKELNVAHNLIQSFKLP-EYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNL 180

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 45.7 bits (109), Expect = 8e-06
 Identities = 22/119 (18%), Positives = 53/119 (44%), Gaps = 11/119 (9%)

Query: 101 TIPNKFFERMIQVRVINFSYMNLLSLPSSLGL---LSNLQNLSLYNCKL--LDITVIRDL 155
           ++ N     +  ++ +N ++  + S          L+NL++L L + K+  +  T +R L
Sbjct: 114 SLENFPIGHLKTLKELNVAHNLIQSFKLP-EYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172

Query: 156 KKLAV----LCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELY 210
            ++ +    L L  + +  +     +   L+ L L     L+ +P  I   L+ L++++
Sbjct: 173 HQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIW 230

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 51.3 bits (122), Expect = 2e-07
 Identities = 22/106 (20%), Positives = 38/106 (35%), Gaps = 6/106 (5%)

Query: 116 INFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDI---TVIRDLKKLAVLCLRGSDIKRLP 172
           +  +    L     L    NL  L + N + L       +R L +L  L +  S ++ + 
Sbjct: 13  LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA 72

Query: 173 VEV-GELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFD 217
            +       L  L+L     LE +    +  LS L+EL +      
Sbjct: 73  PDAFHFTPRLSRLNLSFN-ALESLSWKTVQGLS-LQELVLSGNPLH 116

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 50.5 bits (121), Expect = 2e-07
 Identities = 44/158 (27%), Positives = 69/158 (43%), Gaps = 30/158 (18%)

Query: 116 INFSYMNLLSLPSSLGLLSNLQNLSLYNCKL--LDITVIRDLKKLAVLCLRGSDIKRLPV 173
           ++       S+P+  G+ +N Q L L++ ++  L+  V   L  L  L L  + +  LPV
Sbjct: 24  VDCRSKRHASVPA--GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPV 81

Query: 174 EV-GELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMG-------PRSFDKWEVEVEG 225
            V   LT L +LDL    +L V+P  +   L HL+EL+M        PR  ++       
Sbjct: 82  GVFDSLTQLTVLDLGT-NQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIER------- 133

Query: 226 VKNASLHELKHLISLELQIQDVNTFPRGLF--LEKLET 261
                L  L HL   + Q++ +   P G F  L  L  
Sbjct: 134 -----LTHLTHLALDQNQLKSI---PHGAFDRLSSLTH 163

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 30/115 (26%), Positives = 46/115 (40%), Gaps = 8/115 (6%)

Query: 101 TIPNKFFERMIQVRVINFSYMNLLSLPSSLGL---LSNLQNLSLYNCKL--LDITVIRDL 155
            +    F+ +I ++ +      L +LP   G+   L+ L  L L   +L  L   V   L
Sbjct: 54  KLEPGVFDSLINLKELYLGSNQLGALPV--GVFDSLTQLTVLDLGTNQLTVLPSAVFDRL 111

Query: 156 KKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELY 210
             L  L +  + +  LP  +  LT L  L L    +L+ IP      LS L   Y
Sbjct: 112 VHLKELFMCCNKLTELPRGIERLTHLTHLALDQ-NQLKSIPHGAFDRLSSLTHAY 165

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 5/96 (5%)

Query: 119 SYMNLLSLPSSLGLLSNLQNLSLYNCKLLDIT--VIRDLKKLAVLCLRGSDIKRLPVEV- 175
               L ++P   G+ +  Q + L+  ++  +     R  + L +L L  + + R+     
Sbjct: 19  PQQGLQAVPV--GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAF 76

Query: 176 GELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYM 211
             L LL  LDL D  +L  + P     L  L  L++
Sbjct: 77  TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL 112

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 51.0 bits (122), Expect = 3e-07
 Identities = 23/122 (18%), Positives = 56/122 (45%), Gaps = 3/122 (2%)

Query: 98  SSLTIPNKFFERMIQVRVINFSYMNLLSL--PSSLGLLSNLQNLSLYNCKLLDITVIRDL 155
             L+   +   +M  ++ ++ S  ++             +L +L++ +  L D       
Sbjct: 361 KELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP 420

Query: 156 KKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRS 215
            ++ VL L  + IK +P +V +L  L+ L++    +L+ +P  I   L+ L+++++    
Sbjct: 421 PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHTNP 479

Query: 216 FD 217
           +D
Sbjct: 480 WD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 23/103 (22%), Positives = 46/103 (44%), Gaps = 5/103 (4%)

Query: 113 VRVINFSYMNLLSLPSS-LGLLSNLQNLSLYNCKL--LDITVIRDLKKLAVLCLRGSDIK 169
             ++N S   +  L +S +  LS L+ L + + ++  LDI+V +  ++L  L L  + + 
Sbjct: 23  TTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV 82

Query: 170 RLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMG 212
           ++         L+ LDL       +       N+S L+ L + 
Sbjct: 83  KIS--CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLS 123

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 40.2 bits (94), Expect = 8e-04
 Identities = 17/117 (14%), Positives = 41/117 (35%), Gaps = 7/117 (5%)

Query: 97  SSSLTIPNKFFERMIQVRVINFSYMNLLSLPSS-LGLLSNLQNLSLYNCKLLDIT----V 151
           S +  +      ++     ++FS   L        G L+ L+ L L   +L +++    +
Sbjct: 310 SGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEM 369

Query: 152 IRDLKKLAVLCLRGSDIKRLPVEVG--ELTLLRLLDLRDCMELEVIPPNILSNLSHL 206
              +K L  L +  + +     +        L  L++   +  + I   +   +  L
Sbjct: 370 TTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVL 426

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 51.0 bits (122), Expect = 3e-07
 Identities = 23/147 (15%), Positives = 45/147 (30%), Gaps = 7/147 (4%)

Query: 114 RVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGSDIKRLPV 173
           + +  S   L SLP        L+ L +   +L  +        L  L +  + + RLP 
Sbjct: 224 KELIVSGNRLTSLPVLPS---ELKELMVSGNRLTSLP--MLPSGLLSLSVYRNQLTRLPE 278

Query: 174 EVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHE 233
            +  L+    ++L     L       L  ++     Y GP             +  +LH 
Sbjct: 279 SLIHLSSETTVNLEGN-PLSERTLQALREITSA-PGYSGPIIRFDMAGASAPRETRALHL 336

Query: 234 LKHLISLELQIQDVNTFPRGLFLEKLE 260
                 +  +  +     R     + +
Sbjct: 337 AAADWLVPAREGEPAPADRWHMFGQED 363

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 49.1 bits (117), Expect = 1e-06
 Identities = 21/114 (18%), Positives = 39/114 (34%), Gaps = 18/114 (15%)

Query: 112 QVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGSDIKRL 171
              V+N     L +LP  L   +++  L + +  L  +       +L  L + G+ +  L
Sbjct: 41  GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLP--ALPPELRTLEVSGNQLTSL 96

Query: 172 PVEVGELTLLRLLDLRDCMELEVIPPNI----LSN---------LSHLEELYMG 212
           PV    L  L +        L  +P  +    +              L+EL + 
Sbjct: 97  PVLPPGLLELSIFSNPLT-HLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVS 149

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 47.2 bits (112), Expect = 5e-06
 Identities = 24/100 (24%), Positives = 36/100 (36%), Gaps = 13/100 (13%)

Query: 112 QVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGSDIKRL 171
           ++R +  S   L SLP     L  L   S     L  +        L  L + G+ +  L
Sbjct: 82  ELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPAL-----PSGLCKLWIFGNQLTSL 136

Query: 172 PVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYM 211
           PV    L  L + D     +L  +P       S L +L+ 
Sbjct: 137 PVLPPGLQELSVSD----NQLASLPALP----SELCKLWA 168

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 24/101 (23%), Positives = 39/101 (38%), Gaps = 13/101 (12%)

Query: 112 QVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGSDIKRL 171
            ++ ++ S   L SLP+       L  L  YN +L   ++      L  L +  + +  L
Sbjct: 142 GLQELSVSDNQLASLPALPS---ELCKLWAYNNQL--TSLPMLPSGLQELSVSDNQLASL 196

Query: 172 PVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMG 212
           P    EL  L   + R    L  +P       S L+EL + 
Sbjct: 197 PTLPSELYKLWAYNNR----LTSLPALP----SGLKELIVS 229

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 24/116 (20%), Positives = 41/116 (35%), Gaps = 24/116 (20%)

Query: 112 QVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGSDIKRL 171
            ++ ++ S   L SLP+       L  L  YN +L  +        L  L + G+ +  L
Sbjct: 182 GLQELSVSDNQLASLPTLPS---ELYKLWAYNNRLTSLPA--LPSGLKELIVSGNRLTSL 236

Query: 172 PVEVGELTLLRL-----------------LDLRDCMELEVIPPNILSNLSHLEELY 210
           PV   EL  L +                 L +     L  +P ++  +LS    + 
Sbjct: 237 PVLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQ-LTRLPESL-IHLSSETTVN 290

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 49.3 bits (118), Expect = 4e-07
 Identities = 26/157 (16%), Positives = 45/157 (28%), Gaps = 32/157 (20%)

Query: 119 SYMNLLSLPSSLGLLSNLQNLSLYNCKLLDIT---VIRDLKKLAVLCLRGSDIKRLPVEV 175
           S   L  +P    +      L L N +   +    + + L +L  +    + I  +    
Sbjct: 19  SNQKLNKIPE--HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGA 76

Query: 176 -GELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMG--------PRSFDKWEVEVEGV 226
               + +  + L     LE +   +   L  L+ L +           SF          
Sbjct: 77  FEGASGVNEILLTS-NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIG-------- 127

Query: 227 KNASLHELKHLISLELQIQDVNTFPRGLF--LEKLET 261
                  L  +  L L    + T   G F  L  L T
Sbjct: 128 -------LSSVRLLSLYDNQITTVAPGAFDTLHSLST 157

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 22/113 (19%), Positives = 39/113 (34%), Gaps = 27/113 (23%)

Query: 101 TIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDIT--VIRDLKKL 158
            I    FE                         S +  + L + +L ++   + + L+ L
Sbjct: 71  DIEEGAFEG-----------------------ASGVNEILLTSNRLENVQHKMFKGLESL 107

Query: 159 AVLCLRGSDIKRLPVEV-GELTLLRLLDLRDCMELEVIPPNILSNLSHLEELY 210
             L LR + I  +  +    L+ +RLL L D  ++  + P     L  L  L 
Sbjct: 108 KTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLN 159

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 49.8 bits (119), Expect = 5e-07
 Identities = 22/116 (18%), Positives = 42/116 (36%), Gaps = 5/116 (4%)

Query: 101 TIPNKFFERMIQVRVINFSYMNLLSLPSSLGL-LSNLQNLSL-YNCKLLDI--TVIRDL- 155
            I  + F+ +  ++ +  S   +  LP    +       L +  N  +  I       L 
Sbjct: 94  YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS 153

Query: 156 KKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYM 211
            +  +L L  + I+ +       T L  L+L D   LE +P ++    S    L +
Sbjct: 154 FESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDI 209

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 49.2 bits (118), Expect = 8e-07
 Identities = 21/103 (20%), Positives = 42/103 (40%), Gaps = 6/103 (5%)

Query: 113 VRVINFSYMNLLSLP-SSLGLLSNLQNLSLYNCKLLDIT--VIRDLKKLAVLCLRGSDIK 169
             +++    ++  L       L +L  L L N K+  I       L+KL  L +  + + 
Sbjct: 56  TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV 115

Query: 170 RLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMG 212
            +P  +   + L  L + D   +  +P  + S L ++  + MG
Sbjct: 116 EIPPNL--PSSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMG 155

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 39.6 bits (93), Expect = 9e-04
 Identities = 14/113 (12%), Positives = 33/113 (29%), Gaps = 16/113 (14%)

Query: 101 TIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAV 160
            I N     +  +R ++     L  +P+ L  L  LQ + L+   +  +           
Sbjct: 231 MIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKV----------- 279

Query: 161 LCLRGSDIKRLPVEVGELTLLRLLDLRD-CMELEVIPPNILSNLSHLEELYMG 212
               G +         +      + L +  +    + P     ++    +  G
Sbjct: 280 ----GVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFG 328

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 48.3 bits (115), Expect = 2e-06
 Identities = 24/136 (17%), Positives = 53/136 (38%), Gaps = 4/136 (2%)

Query: 84  PQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSL--GLLSNLQNLSL 141
            +L+ L         +        + M  +  ++ S  +L S           ++  L+L
Sbjct: 377 KRLQTLI-LQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNL 435

Query: 142 YNCKLLDITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILS 201
            +  L          K+ VL L  + I  +P +V  L  L+ L++    +L+ +P  +  
Sbjct: 436 SSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVAS-NQLKSVPDGVFD 494

Query: 202 NLSHLEELYMGPRSFD 217
            L+ L+ +++    +D
Sbjct: 495 RLTSLQYIWLHDNPWD 510

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 42.2 bits (99), Expect = 2e-04
 Identities = 45/259 (17%), Positives = 84/259 (32%), Gaps = 38/259 (14%)

Query: 113 VRVINFSYMNLLSLPSS-LGLLSNLQNLSLYNCKL--LDITVIRDLKKLAVLCLRGSDIK 169
            + ++ S  ++  L    +  LS L+ L L + ++  LD  V    + L  L +  + ++
Sbjct: 54  TKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ 113

Query: 170 RLPVEVGELTLLRLLDLRDCMELEVIPPN-ILSNLSHLEELYMG---------------- 212
            +      +  LR LDL    + +V+P      NL+ L  L +                 
Sbjct: 114 NIS--CCPMASLRHLDL-SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLH 170

Query: 213 --PRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRGLFLEKLETFKILIGGVW 270
                 D     ++G +  SL      + L L     + F   + +  +     L   + 
Sbjct: 171 LSCILLDLVSYHIKGGETESLQIPNTTV-LHLVFHPNSLFSVQVNM-SVNALGHL--QLS 226

Query: 271 GWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQ 330
             +  D  C+     L    R    L + L+ IE  W            V       P  
Sbjct: 227 NIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTW---------KCSVKLFQFFWPRP 277

Query: 331 LKHLYIRGSHLTLNPAESN 349
           +++L I    +T       
Sbjct: 278 VEYLNIYNLTITERIDREE 296

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 40.2 bits (94), Expect = 8e-04
 Identities = 28/199 (14%), Positives = 53/199 (26%), Gaps = 52/199 (26%)

Query: 100 LTIPNKFFERMIQVRVINFSYMNLLSLPSS-LGLLSNLQNLSLYNCKLLDI--TVIRDLK 156
           L      +    ++ +   S  +   +        S+   L+       D        LK
Sbjct: 318 LFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLK 377

Query: 157 KLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCM----------ELEVIPPNILS-NLSH 205
           +L  L L+ + +K           +  L+  D                   +IL  NLS 
Sbjct: 378 RLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSS 437

Query: 206 --------------LEELYMG-------PRSFDKWEVEVEGVKNASLHELKHLISLELQI 244
                         ++ L +        P+                L  L+    L +  
Sbjct: 438 NMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTH------------LQALQE---LNVAS 482

Query: 245 QDVNTFPRGLF--LEKLET 261
             + + P G+F  L  L+ 
Sbjct: 483 NQLKSVPDGVFDRLTSLQY 501

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 47.8 bits (114), Expect = 3e-06
 Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 6/98 (6%)

Query: 115 VINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGSDIKRLPVE 174
            +  ++    +   S   L+ L +L  +N  + D+T I  L  L  L    ++I  L   
Sbjct: 23  EVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD-- 80

Query: 175 VGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMG 212
           + + T L  L      +L  +    ++ L+ L  L   
Sbjct: 81  LSQNTNLTYLACDSN-KLTNLD---VTPLTKLTYLNCD 114

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 23/134 (17%), Positives = 49/134 (36%), Gaps = 14/134 (10%)

Query: 78  LEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQ 137
           L+V + P L  L  CA    + + + +       Q+  ++      ++    +   + L 
Sbjct: 121 LDVSQNPLLTYLN-CARNTLTEIDVSH-----NTQLTELDCHLNKKITKLD-VTPQTQLT 173

Query: 138 NLSLYNCKLLDITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPP 197
            L     K+ ++  +   K L  L    ++I +L +   +   L  LD     +L  I  
Sbjct: 174 TLDCSFNKITELD-VSQNKLLNRLNCDTNNITKLDL--NQNIQLTFLDCSSN-KLTEID- 228

Query: 198 NILSNLSHLEELYM 211
             ++ L+ L     
Sbjct: 229 --VTPLTQLTYFDC 240

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 22/133 (16%), Positives = 43/133 (32%), Gaps = 14/133 (10%)

Query: 78  LEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQ 137
           L+V    +L  L  C   + + L +          +  +N +   L  +   +   + L 
Sbjct: 100 LDVTPLTKLTYL-NCDTNKLTKLDVSQ-----NPLLTYLNCARNTLTEID--VSHNTQLT 151

Query: 138 NLSLYNCKLLDITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPP 197
            L  +  K +    +    +L  L    + I  L   V +  LL  L+      +  +  
Sbjct: 152 ELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTN-NITKLD- 207

Query: 198 NILSNLSHLEELY 210
             L+    L  L 
Sbjct: 208 --LNQNIQLTFLD 218

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 26/104 (25%), Positives = 38/104 (36%), Gaps = 8/104 (7%)

Query: 107 FERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGS 166
              + Q+   + S   L  L  S   LS L  L      LL+I +  + + +        
Sbjct: 229 VTPLTQLTYFDCSVNPLTELDVST--LSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCR 286

Query: 167 DIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELY 210
            IK L  +V   T L LLD +    +  +    LS    L  LY
Sbjct: 287 KIKEL--DVTHNTQLYLLDCQAA-GITELD---LSQNPKLVYLY 324

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 47.7 bits (113), Expect = 4e-06
 Identities = 27/149 (18%), Positives = 44/149 (29%), Gaps = 10/149 (6%)

Query: 114 RVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDI-TVIRDLKKL----AVLCLRGSDI 168
            V++     L  LP    L  +L+ L +    L  +  V                R + I
Sbjct: 163 EVLSVRNNQLTFLPE---LPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRI 219

Query: 169 KRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKN 228
             +P  +  L     + L D   L       LS  +     Y GPR +       +   +
Sbjct: 220 THIPENILSLDPTCTIILEDN-PLSSRIRESLSQQTAQ-PDYHGPRIYFSMSDGQQNTLH 277

Query: 229 ASLHELKHLISLELQIQDVNTFPRGLFLE 257
             L +       E +  DV+        E
Sbjct: 278 RPLADAVTAWFPENKQSDVSQIWHAFEHE 306

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 43.8 bits (103), Expect = 6e-05
 Identities = 31/164 (18%), Positives = 60/164 (36%), Gaps = 25/164 (15%)

Query: 58  SIASTEQNVFSATEEQTNLLLEVVECPQL-ELLFICADKESSSL--------TIPNKFFE 108
           +I+ T  + FSA ++     L      +   LL  C   + S L        ++P+    
Sbjct: 21  TISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSSLPDNLPP 80

Query: 109 RMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGSDI 168
              Q+ V+  +   L+SLP       +L+ L   + +L  +        L  L +  + +
Sbjct: 81  ---QITVLEITQNALISLPELPA---SLEYLDACDNRLSTLP--ELPASLKHLDVDNNQL 132

Query: 169 KRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMG 212
             LP     L  +   + +    L ++P       + LE L + 
Sbjct: 133 TMLPELPALLEYINADNNQ----LTMLP----ELPTSLEVLSVR 168

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 43.4 bits (102), Expect = 7e-05
 Identities = 23/129 (17%), Positives = 43/129 (33%), Gaps = 13/129 (10%)

Query: 83  CPQLELLFICADKESSSLT-IPNKFFERMIQVRVINFSYMNLLSLPSSL--GLLSNLQNL 139
            P      +  +   ++++     +F    +         N     S L   L++    L
Sbjct: 5   LPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSEL 64

Query: 140 SLYNCKLLDITVIRD--LKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPP 197
            L    L   + + D    ++ VL +  + +  LP     L  L   D R    L  +P 
Sbjct: 65  QLNRLNL---SSLPDNLPPQITVLEITQNALISLPELPASLEYLDACDNR----LSTLPE 117

Query: 198 NILSNLSHL 206
              ++L HL
Sbjct: 118 LP-ASLKHL 125

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.8 bits (109), Expect = 5e-06
 Identities = 24/127 (18%), Positives = 49/127 (38%), Gaps = 9/127 (7%)

Query: 117 NFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGSDIKRLPVEVG 176
           +     +  + ++L  L   ++L+L    +  I+ +  ++ L +L L  + IK++     
Sbjct: 31  HGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDA 90

Query: 177 ELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKH 236
               L  L +    ++  +    +  L +L  LYM       W  E++      L  L  
Sbjct: 91  VADTLEELWISYN-QIASLSG--IEKLVNLRVLYMSNNKITNWG-EID-----KLAALDK 141

Query: 237 LISLELQ 243
           L  L L 
Sbjct: 142 LEDLLLA 148

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 42/143 (29%), Positives = 60/143 (41%), Gaps = 29/143 (20%)

Query: 133 LSNLQNLSLYNCKL--LDITVIRDLKKLAVLCLRGSDIKRLPVEV-GELTLLRLLDLRDC 189
           L+ L  L+L   +L  L   V  DL +L  L L  + +  LP+ V   LT L  L L   
Sbjct: 58  LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL-GG 116

Query: 190 MELEVIPPNILSNLSHLEELYMG--------PRSFDKWEVEVEGVKNASLHELKHLISLE 241
            +L+ +P  +   L+ L+EL +           +FDK            L  L+ L    
Sbjct: 117 NQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDK------------LTNLQTLSLST 164

Query: 242 LQIQDVNTFPRGLF--LEKLETF 262
            Q+Q V   P G F  L KL+T 
Sbjct: 165 NQLQSV---PHGAFDRLGKLQTI 184

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.0 bits (99), Expect = 5e-05
 Identities = 26/104 (25%), Positives = 40/104 (38%), Gaps = 5/104 (4%)

Query: 111 IQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGSDIKR 170
           ++  V++ S  N   L         L+ LS  N  L  I  +  L KL  L L  + +  
Sbjct: 19  VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSG 78

Query: 171 L-PVEVGELTLLRLLDLRDCM--ELEVIPPNILSNLSHLEELYM 211
              V   +   L  L+L      +L  I P  L  L +L+ L +
Sbjct: 79  GLEVLAEKCPNLTHLNLSGNKIKDLSTIEP--LKKLENLKSLDL 120

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 20/113 (17%), Positives = 44/113 (38%), Gaps = 11/113 (9%)

Query: 133 LSNLQNLSLYNCKLLDITVI---RDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDC 189
            S+++ L L N +  +  +     + ++L  L      +  +   + +L  L+ L+L D 
Sbjct: 16  PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN-LPKLNKLKKLELSDN 74

Query: 190 MELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLEL 242
             +      +     +L  L +           +E      L +L++L SL+L
Sbjct: 75  -RVSGGLEVLAEKCPNLTHLNLSGNKIKDLS-TIE-----PLKKLENLKSLDL 120

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.0 bits (99), Expect = 6e-05
 Identities = 23/101 (22%), Positives = 40/101 (39%), Gaps = 5/101 (4%)

Query: 114 RVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGSDIKRL-P 172
            V++    N   +        NL+ LSL N  L+ ++ +  L KL  L L  + I     
Sbjct: 29  LVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLD 88

Query: 173 VEVGELTLLRLLDLRDCM--ELEVIPPNILSNLSHLEELYM 211
           +   +L  L  L+L      ++  +    L  L  L+ L +
Sbjct: 89  MLAEKLPNLTHLNLSGNKLKDISTL--EPLKKLECLKSLDL 127

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 27/112 (24%), Positives = 41/112 (36%), Gaps = 26/112 (23%)

Query: 160 VLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMG------- 212
            L L G+    +P E+     L L+DL +   +  +     SN++ L  L +        
Sbjct: 35  ELYLDGNQFTLVPKELSNYKHLTLIDLSN-NRISTLSNQSFSNMTQLLTLILSYNRLRCI 93

Query: 213 -PRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRGLF--LEKLET 261
            PR+FD             L  L+    L L   D++  P G F  L  L  
Sbjct: 94  PPRTFDG------------LKSLRL---LSLHGNDISVVPEGAFNDLSALSH 130

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 4/103 (3%)

Query: 113 VRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKL--LDITVIRDLKKLAVLCLRGSDIKR 170
           V  +         +P  L    +L  + L N ++  L      ++ +L  L L  + ++ 
Sbjct: 33  VTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92

Query: 171 LPVEV-GELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMG 212
           +P      L  LRLL L    ++ V+P    ++LS L  L +G
Sbjct: 93  IPPRTFDGLKSLRLLSLHG-NDISVVPEGAFNDLSALSHLAIG 134

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 42/190 (22%), Positives = 70/190 (36%), Gaps = 52/190 (27%)

Query: 107 FERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKL-------------------- 146
              +  +  I  +  ++ S+   +  L N++ L+L   KL                    
Sbjct: 37  QNELNSIDQIIANNSDIKSVQG-IQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGN 95

Query: 147 ----LDITVIRDLKKLAVLCLRGSDIKRLPVEV-GELTLLRLLDLRDCMELEVIPPNILS 201
               L   V   L  L  L L  + ++ LP  V  +LT L  L+L    +L+ +P  +  
Sbjct: 96  QLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAH-NQLQSLPKGVFD 154

Query: 202 NLSHLEELYMG--------PRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRG 253
            L++L EL +            FDK            L +LK L   + Q++ V   P G
Sbjct: 155 KLTNLTELDLSYNQLQSLPEGVFDK------------LTQLKDLRLYQNQLKSV---PDG 199

Query: 254 LF--LEKLET 261
           +F  L  L+ 
Sbjct: 200 VFDRLTSLQY 209

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 17/108 (15%), Positives = 43/108 (39%), Gaps = 5/108 (4%)

Query: 107 FERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGS 166
           +   ++ R ++     +  + +    L     +   + ++  +     L++L  L +  +
Sbjct: 15  YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNN 74

Query: 167 DIKRLPVEVGE-LTLLRLLDLRDCM--ELEVIPPNILSNLSHLEELYM 211
            I R+   + + L  L  L L +    EL  +  + L++L  L  L +
Sbjct: 75  RICRIGEGLDQALPDLTELILTNNSLVELGDL--DPLASLKSLTYLCI 120

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 39.6 bits (93), Expect = 4e-04
 Identities = 22/122 (18%), Positives = 44/122 (36%), Gaps = 9/122 (7%)

Query: 122 NLLSLPSSLGLLSNLQNLSLYNCKLLDITVI-RDLKKLAVLCLRGSDIKRLPVEVGELTL 180
            L+   +        + L L   K+  I  +   L +   +    ++I++L      L  
Sbjct: 7   ELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRR 65

Query: 181 LRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISL 240
           L+ L + +   +  I   +   L  L EL +   S  +   +++      L  LK L  L
Sbjct: 66  LKTLLVNN-NRICRIGEGLDQALPDLTELILTNNSLVELG-DLD-----PLASLKSLTYL 118

Query: 241 EL 242
            +
Sbjct: 119 CI 120

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	350
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.93
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.93
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.93
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.93
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.93
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.93
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.93
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.93
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.92
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.92
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.92
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.92
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.92
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.92
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.92
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.92
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.92
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.92
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.92
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.91
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.91
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.91
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.91
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.91
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.91
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.91
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.91
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.91
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.91
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.9
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.9
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.9
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.9
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.9
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.9
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.9
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.9
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.9
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.89
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.89
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.89
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.89
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.89
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.88
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.88
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.88
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.88
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.88
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.88
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.88
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.87
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.87
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.87
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.87
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.87
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.87
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.87
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.87
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.87
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.87
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.86
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.86
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.86
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.85
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.85
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.84
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.84
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.84
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.84
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.84
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.83
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.82
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.82
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.82
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.81
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.81
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.8
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.8
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.79
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.79
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.77
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.77
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.77
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.76
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.76
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.76
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.75
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.74
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.74
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.73
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.73
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.73
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.71
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.71
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.7
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.7
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.69
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.68
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.68
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.68
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.67
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.67
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.66
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.65
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.65
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.65
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.64
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.63
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.62
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.62
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.61
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.6
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.6
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.59
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.59
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.58
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.58
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.51
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.5
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.5
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.5
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.49
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.48
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.47
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.45
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.44
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.44
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.44
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.41
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.38
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.38
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.34
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.31
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.29
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.29
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.24
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.24
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.24
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.23
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.13
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.1
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.09
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.02
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.99
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.9
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.74
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.73
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.67
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.38
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.32
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.31
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.29
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.26
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.25
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.18
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.02
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.01
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.79
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.79
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.53
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.57
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.55
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	96.4
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.19
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.49
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	82.76

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.93  E-value=5e-26  Score=211.19  Aligned_cols=273  Identities=15%  Similarity=0.214  Sum_probs=169.0

Q ss_pred             eeeeccccccccc--ccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcC-CCccccCcccccEEEec
Q 037732           66 VFSATEEQTNLLL--EVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLS-LPSSLGLLSNLQNLSLY  142 (350)
Q Consensus        66 ~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~l~~l~~L~~L~l~  142 (350)
                      .+.++.+.+..++  .+.++++|++|++  +.+.....++...+..+++|++|++++|.+.. .|..+.++++|++|+++
T Consensus        34 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~L--~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  111 (455)
T 3v47_A           34 YVDLSLNSIAELNETSFSRLQDLQFLKV--EQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLT  111 (455)
T ss_dssp             EEECCSSCCCEECTTTTSSCTTCCEEEC--CCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECT
T ss_pred             EEEecCCccCcCChhHhccCccccEEEC--cCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCC
Confidence            3445555666553  4567888888888  55555556655556778888888888888876 46778888888888888


Q ss_pred             CCCCCC--chh--hhccCCCcEEEecCCCCccc-ccc-ccCCCCccEEeccCCCCCCccCcchhC---------------
Q 037732          143 NCKLLD--ITV--IRDLKKLAVLCLRGSDIKRL-PVE-VGELTLLRLLDLRDCMELEVIPPNILS---------------  201 (350)
Q Consensus       143 ~~~l~~--~~~--l~~l~~L~~L~l~~~~~~~l-p~~-l~~l~~L~~L~l~~~~~~~~~~~~~l~---------------  201 (350)
                      +|.+.+  +..  +..+++|++|++++|.+..+ |.. +.++++|++|++++|......+.. +.               
T Consensus       112 ~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~~~L~~L~l~~n  190 (455)
T 3v47_A          112 QCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEED-LLNFQGKHFTLLRLSSI  190 (455)
T ss_dssp             TSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTT-SGGGTTCEEEEEECTTC
T ss_pred             CCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhh-hhccccccccccccccC
Confidence            888876  433  78888888888888888766 444 778888888888885543332322 22               


Q ss_pred             -------------------CCCCCcEEEcCCCCCCcchhh----------------------------------------
Q 037732          202 -------------------NLSHLEELYMGPRSFDKWEVE----------------------------------------  222 (350)
Q Consensus       202 -------------------~l~~L~~L~l~~~~~~~~~~~----------------------------------------  222 (350)
                                         .+++|++|++++|.+......                                        
T Consensus       191 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~  270 (455)
T 3v47_A          191 TLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFK  270 (455)
T ss_dssp             BCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTG
T ss_pred             cccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccc
Confidence                               235677777777655321110                                        


Q ss_pred             ----------------hccccccchhhcCCCceeEEEecCCCCCCc-cc-ccCCccEEEEEEcCcc----cccccCccce
Q 037732          223 ----------------VEGVKNASLHELKHLISLELQIQDVNTFPR-GL-FLEKLETFKILIGGVW----GWEYADIWCR  280 (350)
Q Consensus       223 ----------------~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~----~~~~~~~~L~  280 (350)
                                      +.+..+..++.+++|+.|++++|.+..++. .+ .+++|++|++..+.+.    ..++.+++|+
T Consensus       271 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  350 (455)
T 3v47_A          271 GLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLE  350 (455)
T ss_dssp             GGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCC
T ss_pred             cccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCC
Confidence                            011123445555666666666666554432 33 4566666666544432    2355566666


Q ss_pred             EEEEeCCCcccc-hHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEeCccceeccC
Q 037732          281 EFKIDLDSKIRL-KDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLTLNPA  346 (350)
Q Consensus       281 ~L~l~~~~~~~~-~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~p~  346 (350)
                      .|++++|..... |.++. .+++|+.|++++|.++++  .+..+  ..+++|+.|++++|++++..+
T Consensus       351 ~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~--~~~~~--~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          351 VLDLSYNHIRALGDQSFL-GLPNLKELALDTNQLKSV--PDGIF--DRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             EEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCSCC--CTTTT--TTCTTCCEEECCSSCBCCCTT
T ss_pred             EEECCCCcccccChhhcc-ccccccEEECCCCccccC--CHhHh--ccCCcccEEEccCCCcccCCC
Confidence            666666655554 22333 346666666666666652  12233  456666666666666666544

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.93  E-value=1.5e-24  Score=194.19  Aligned_cols=264  Identities=15%  Similarity=0.183  Sum_probs=174.2

Q ss_pred             eeeecccccccccccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCC
Q 037732           66 VFSATEEQTNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCK  145 (350)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~  145 (350)
                      .+.+.+..+..++.+..+++|++|++  +.+ ....++.  +..+++|++|++++|.+..++ .+..+++|++|++++|.
T Consensus        48 ~L~l~~~~i~~~~~~~~~~~L~~L~l--~~n-~i~~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~  121 (347)
T 4fmz_A           48 KLVVAGEKVASIQGIEYLTNLEYLNL--NGN-QITDISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDN  121 (347)
T ss_dssp             EEECCSSCCCCCTTGGGCTTCCEEEC--CSS-CCCCCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSC
T ss_pred             EEEEeCCccccchhhhhcCCccEEEc--cCC-ccccchh--hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCc
Confidence            34455566666676777778888888  333 3444444  457778888888877777664 47777788888888777


Q ss_pred             CCCchhhhccCCCcEEEecCCCCccccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhc-
Q 037732          146 LLDITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVE-  224 (350)
Q Consensus       146 l~~~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-  224 (350)
                      +...+.+..+++|++|++++|.....+..+..+++|+.|++++|. +..++.  +..+++|++|++++|.+...+. .. 
T Consensus       122 i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~  197 (347)
T 4fmz_A          122 ISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVTP--IANLTDLYSLSLNYNQIEDISP-LAS  197 (347)
T ss_dssp             CCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECTTSCCCCCGG-GGG
T ss_pred             ccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC-cCCchh--hccCCCCCEEEccCCccccccc-ccC
Confidence            777444777777777777777433333346667777777776633 333333  4566666666666665543332 00 


Q ss_pred             --------------cccccchhhcCCCceeEEEecCCCCCCcccccCCccEEEEEEcCccc--ccccCccceEEEEeCCC
Q 037732          225 --------------GVKNASLHELKHLISLELQIQDVNTFPRGLFLEKLETFKILIGGVWG--WEYADIWCREFKIDLDS  288 (350)
Q Consensus       225 --------------~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~--~~~~~~~L~~L~l~~~~  288 (350)
                                    ...+ .+..+++|+.|++++|.+..++....+++|++|++..+.+..  .+..+++|+.|++++|.
T Consensus       198 l~~L~~L~l~~n~l~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~  276 (347)
T 4fmz_A          198 LTSLHYFTAYVNQITDIT-PVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQ  276 (347)
T ss_dssp             CTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC
T ss_pred             CCccceeecccCCCCCCc-hhhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCc
Confidence                          0111 166777888888888887777662267888888886655432  46677888888888877


Q ss_pred             cccchHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEeCccceeccC
Q 037732          289 KIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLTLNPA  346 (350)
Q Consensus       289 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~p~  346 (350)
                      ...++.  ...+++|+.|++++|.+++.  .+..+  ..+++|+.|++++|+++.+|+
T Consensus       277 l~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~l--~~l~~L~~L~L~~n~l~~~~~  328 (347)
T 4fmz_A          277 ISDISV--LNNLSQLNSLFLNNNQLGNE--DMEVI--GGLTNLTTLFLSQNHITDIRP  328 (347)
T ss_dssp             CCCCGG--GGGCTTCSEEECCSSCCCGG--GHHHH--HTCTTCSEEECCSSSCCCCGG
T ss_pred             cCCChh--hcCCCCCCEEECcCCcCCCc--ChhHh--hccccCCEEEccCCccccccC
Confidence            666642  33468888888888888764  45556  668888888888888887765

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.93  E-value=5.3e-25  Score=195.77  Aligned_cols=242  Identities=15%  Similarity=0.255  Sum_probs=138.1

Q ss_pred             CccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCc-cccCcccccEEEecCCCCCC--chhhhccCCCcEE
Q 037732           85 QLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPS-SLGLLSNLQNLSLYNCKLLD--ITVIRDLKKLAVL  161 (350)
Q Consensus        85 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L  161 (350)
                      +++.+++   .+.....+|..+   .++++.|++++|.++.++. .|..+++|++|++++|.+..  +..++.+++|++|
T Consensus        32 ~l~~l~~---~~~~l~~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (330)
T 1xku_A           32 HLRVVQC---SDLGLEKVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL  105 (330)
T ss_dssp             ETTEEEC---TTSCCCSCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred             CCeEEEe---cCCCccccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEE
Confidence            5566666   223344455432   2456666666666665443 46666666666666666655  4556666666666


Q ss_pred             EecCCCCccccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeE
Q 037732          162 CLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLE  241 (350)
Q Consensus       162 ~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  241 (350)
                      ++++|.+..+|..+.  ++|++|++++ +.+..++...+.++++|++|++++|.+..     .+..+..+.++++|+.|+
T Consensus       106 ~Ls~n~l~~l~~~~~--~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-----~~~~~~~~~~l~~L~~L~  177 (330)
T 1xku_A          106 YLSKNQLKELPEKMP--KTLQELRVHE-NEITKVRKSVFNGLNQMIVVELGTNPLKS-----SGIENGAFQGMKKLSYIR  177 (330)
T ss_dssp             ECCSSCCSBCCSSCC--TTCCEEECCS-SCCCBBCHHHHTTCTTCCEEECCSSCCCG-----GGBCTTGGGGCTTCCEEE
T ss_pred             ECCCCcCCccChhhc--ccccEEECCC-CcccccCHhHhcCCccccEEECCCCcCCc-----cCcChhhccCCCCcCEEE
Confidence            666666666665443  5666666666 33444444445666666666666665532     123344566666666666


Q ss_pred             EEecCCCCCCcccccCCccEEEEEEcCc----ccccccCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccchh
Q 037732          242 LQIQDVNTFPRGLFLEKLETFKILIGGV----WGWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVN  317 (350)
Q Consensus       242 l~~~~~~~l~~~~~~~~L~~L~l~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~  317 (350)
                      +++|.+..+|..+. ++|++|++..+.+    +..+..+++|+.|++++|.....+......+++|+.|++++|.++.  
T Consensus       178 l~~n~l~~l~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~--  254 (330)
T 1xku_A          178 IADTNITTIPQGLP-PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK--  254 (330)
T ss_dssp             CCSSCCCSCCSSCC-TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS--
T ss_pred             CCCCccccCCcccc-ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCcc--
Confidence            66666666655542 5666666644432    2245556666666666655554443222234666666666666654  


Q ss_pred             hhhhhhcccCcCcceEEEEeCccceeccC
Q 037732          318 YFVNELVKVGPSQLKHLYIRGSHLTLNPA  346 (350)
Q Consensus       318 ~~~~~l~~~~~~~L~~L~l~~~~~~~~p~  346 (350)
                       +|..+  ..+++|+.|++++|+++.+|+
T Consensus       255 -lp~~l--~~l~~L~~L~l~~N~i~~~~~  280 (330)
T 1xku_A          255 -VPGGL--ADHKYIQVVYLHNNNISAIGS  280 (330)
T ss_dssp             -CCTTT--TTCSSCCEEECCSSCCCCCCT
T ss_pred             -CChhh--ccCCCcCEEECCCCcCCccCh
Confidence             45445  456666666666666666554

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.93  E-value=4.2e-25  Score=206.22  Aligned_cols=108  Identities=25%  Similarity=0.339  Sum_probs=49.1

Q ss_pred             hcCCcceEEeecCCcCcCCCc-cccCcccccEEEecCCCCCC--chhhhccCCCcEEEecCCCCcccc-ccccCCCCccE
Q 037732          108 ERMIQVRVINFSYMNLLSLPS-SLGLLSNLQNLSLYNCKLLD--ITVIRDLKKLAVLCLRGSDIKRLP-VEVGELTLLRL  183 (350)
Q Consensus       108 ~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~l~~~~~~~lp-~~l~~l~~L~~  183 (350)
                      .++++|++|++++|.+..+|. .|..+++|++|++++|.+..  +..+..+++|++|++++|.+..++ ..+..+++|++
T Consensus        77 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  156 (477)
T 2id5_A           77 NNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQ  156 (477)
T ss_dssp             TTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCE
T ss_pred             hCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCE
Confidence            344555555555554444433 23444555555555554444  234444455555555544444332 23444455555


Q ss_pred             EeccCCCCCCccCcchhCCCCCCcEEEcCCCCC
Q 037732          184 LDLRDCMELEVIPPNILSNLSHLEELYMGPRSF  216 (350)
Q Consensus       184 L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  216 (350)
                      |++++| .+..++...+.++++|+.|++++|.+
T Consensus       157 L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~i  188 (477)
T 2id5_A          157 LTLEKC-NLTSIPTEALSHLHGLIVLRLRHLNI  188 (477)
T ss_dssp             EEEESC-CCSSCCHHHHTTCTTCCEEEEESCCC
T ss_pred             EECCCC-cCcccChhHhcccCCCcEEeCCCCcC
Confidence            555442 23333333344444555555544444

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.93  E-value=2.2e-25  Score=197.79  Aligned_cols=223  Identities=18%  Similarity=0.180  Sum_probs=167.9

Q ss_pred             CCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCC-chhhhccCCCcEEEecCCCCccccccccCCCCccEEeccC
Q 037732          110 MIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLD-ITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRD  188 (350)
Q Consensus       110 l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~  188 (350)
                      ...++.|+++++.+..+|..+.++++|++|++++|.+.. |..++.+++|++|++++|.+..+|..+.++++|++|++++
T Consensus        80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~  159 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRA  159 (328)
T ss_dssp             STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEE
T ss_pred             ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCC
Confidence            467777777777777777777777777788877777776 6667777778888887777777777777777788888777


Q ss_pred             CCCCCccCcchhC---------CCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCCCCCCccc-ccCC
Q 037732          189 CMELEVIPPNILS---------NLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRGL-FLEK  258 (350)
Q Consensus       189 ~~~~~~~~~~~l~---------~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~-~~~~  258 (350)
                      |+..+.+|.. +.         ++++|++|++++|.+       . .+|..++++++|+.|++++|.+..+|..+ .+++
T Consensus       160 n~~~~~~p~~-~~~~~~~~~~~~l~~L~~L~L~~n~l-------~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~  230 (328)
T 4fcg_A          160 CPELTELPEP-LASTDASGEHQGLVNLQSLRLEWTGI-------R-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPK  230 (328)
T ss_dssp             ETTCCCCCSC-SEEEC-CCCEEESTTCCEEEEEEECC-------C-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTT
T ss_pred             CCCccccChh-HhhccchhhhccCCCCCEEECcCCCc-------C-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCC
Confidence            7666666665 33         377888888887776       2 55566777888888888888887777776 6777


Q ss_pred             ccEEEEEEcC----cccccccCccceEEEEeCC-CcccchHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceE
Q 037732          259 LETFKILIGG----VWGWEYADIWCREFKIDLD-SKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKH  333 (350)
Q Consensus       259 L~~L~l~~~~----~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~  333 (350)
                      |++|++..+.    ++..++.+++|+.|++++| ....+|..+.. +++|+.|+|++|.+.+.  +|..+  ..+++|+.
T Consensus       231 L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~-l~~L~~L~L~~n~~~~~--iP~~l--~~L~~L~~  305 (328)
T 4fcg_A          231 LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHR-LTQLEKLDLRGCVNLSR--LPSLI--AQLPANCI  305 (328)
T ss_dssp             CCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGG-CTTCCEEECTTCTTCCC--CCGGG--GGSCTTCE
T ss_pred             CCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhc-CCCCCEEeCCCCCchhh--ccHHH--hhccCceE
Confidence            8888876543    3445778899999999984 55567766654 69999999999888773  88888  78999999


Q ss_pred             EEEeCccceeccC
Q 037732          334 LYIRGSHLTLNPA  346 (350)
Q Consensus       334 L~l~~~~~~~~p~  346 (350)
                      +++..+.+..++.
T Consensus       306 l~l~~~~~~~l~~  318 (328)
T 4fcg_A          306 ILVPPHLQAQLDQ  318 (328)
T ss_dssp             EECCGGGSCC---
T ss_pred             EeCCHHHHHHHhh
Confidence            9999887766554

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.93  E-value=3.7e-25  Score=198.62  Aligned_cols=264  Identities=15%  Similarity=0.175  Sum_probs=211.3

Q ss_pred             eeecccccccccccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCC-CccccCcccccEEEecCCC
Q 037732           67 FSATEEQTNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSL-PSSLGLLSNLQNLSLYNCK  145 (350)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~~~  145 (350)
                      .......+..+|.. -.+++++|++  +.+ ....++...+..+++|+.|++++|.++.+ |..|..+++|++|++++|.
T Consensus        36 c~~~~~~l~~iP~~-~~~~L~~L~l--~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  111 (353)
T 2z80_A           36 CKGSSGSLNSIPSG-LTEAVKSLDL--SNN-RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY  111 (353)
T ss_dssp             EECCSTTCSSCCTT-CCTTCCEEEC--TTS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             eeCCCCCccccccc-ccccCcEEEC--CCC-cCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc
Confidence            34455677777752 2368999999  444 45566665567899999999999999875 5679999999999999999


Q ss_pred             CCC-ch-hhhccCCCcEEEecCCCCccccc--cccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchh
Q 037732          146 LLD-IT-VIRDLKKLAVLCLRGSDIKRLPV--EVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEV  221 (350)
Q Consensus       146 l~~-~~-~l~~l~~L~~L~l~~~~~~~lp~--~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  221 (350)
                      ++. +. .++.+++|++|++++|.+..+|.  .+..+++|++|++++|..+..++...++++++|++|++++|.+     
T Consensus       112 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l-----  186 (353)
T 2z80_A          112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL-----  186 (353)
T ss_dssp             CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC-----
T ss_pred             CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc-----
Confidence            988 54 48899999999999999999887  6889999999999997667777655589999999999999988     


Q ss_pred             hhccccccchhhcCCCceeEEEecCCCCCCccc--ccCCccEEEEEEcCcccc-------cccCccceEEEEeCCCcc--
Q 037732          222 EVEGVKNASLHELKHLISLELQIQDVNTFPRGL--FLEKLETFKILIGGVWGW-------EYADIWCREFKIDLDSKI--  290 (350)
Q Consensus       222 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~-------~~~~~~L~~L~l~~~~~~--  290 (350)
                        .+..+..++.+++|+.|++++|.+..+|..+  .+++|+.|++..+.+...       ......++.+++..+...  
T Consensus       187 --~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~  264 (353)
T 2z80_A          187 --QSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDE  264 (353)
T ss_dssp             --CEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHH
T ss_pred             --CccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCc
Confidence              4556788999999999999999998887765  478999999987664331       234567888888875433  


Q ss_pred             ---cchHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEeCccceeccC
Q 037732          291 ---RLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLTLNPA  346 (350)
Q Consensus       291 ---~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~p~  346 (350)
                         .+|.++.. +++|+.|++++|.++.   +|..+. ..+++|+.|++++|++++.++
T Consensus       265 ~l~~l~~~l~~-l~~L~~L~Ls~N~l~~---i~~~~~-~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          265 SLFQVMKLLNQ-ISGLLELEFSRNQLKS---VPDGIF-DRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             HHHHHHHHHHT-CTTCCEEECCSSCCCC---CCTTTT-TTCTTCCEEECCSSCBCCCHH
T ss_pred             chhhhHHHHhc-ccCCCEEECCCCCCCc---cCHHHH-hcCCCCCEEEeeCCCccCcCC
Confidence               35655554 6999999999999997   665431 678999999999999988654

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.93  E-value=5.7e-25  Score=200.07  Aligned_cols=255  Identities=15%  Similarity=0.142  Sum_probs=168.4

Q ss_pred             CCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCC-ccccCcccccEEEecCCCCCC--chhhhccCC
Q 037732           81 VECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLP-SSLGLLSNLQNLSLYNCKLLD--ITVIRDLKK  157 (350)
Q Consensus        81 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~  157 (350)
                      ..+++++.+.+   .+.....+|..++..+++|++|++++|.+..++ ..+..+++|++|++++|.+..  +..++.+++
T Consensus        42 ~~l~~l~~l~l---~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  118 (390)
T 3o6n_A           42 ITLNNQKIVTF---KNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL  118 (390)
T ss_dssp             GGGCCCSEEEE---ESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             cccCCceEEEe---cCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCC
Confidence            35678888888   445577788877778888888888888887654 478888888888888888877  456788888


Q ss_pred             CcEEEecCCCCcccccc-ccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccc---------c
Q 037732          158 LAVLCLRGSDIKRLPVE-VGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGV---------K  227 (350)
Q Consensus       158 L~~L~l~~~~~~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~---------~  227 (350)
                      |++|++++|.+..+|.. +.++++|++|++++|. +..+++..+.++++|++|++++|.+...+......         .
T Consensus       119 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~  197 (390)
T 3o6n_A          119 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNL  197 (390)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSC
T ss_pred             CCEEECCCCccCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCcCCccccccccccceeeccccc
Confidence            88888888888888876 4788888888888844 44454444788888888888888775432100000         0


Q ss_pred             ccchhhc---------------------CCCceeEEEecCCCCCCccc-ccCCccEEEEEEcCc----ccccccCccceE
Q 037732          228 NASLHEL---------------------KHLISLELQIQDVNTFPRGL-FLEKLETFKILIGGV----WGWEYADIWCRE  281 (350)
Q Consensus       228 ~~~l~~l---------------------~~L~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~----~~~~~~~~~L~~  281 (350)
                      ...+...                     ++|+.|++++|.+...+ .+ .+++|++|++..+.+    +..+..+++|+.
T Consensus       198 l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  276 (390)
T 3o6n_A          198 LSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER  276 (390)
T ss_dssp             CSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCE
T ss_pred             ccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccH-HHcCCCCccEEECCCCcCCCcChhHccccccCCE
Confidence            0001111                     23444555555544432 22 456666666655443    224556677777


Q ss_pred             EEEeCCCcccchHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEeCccceeccC
Q 037732          282 FKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLTLNPA  346 (350)
Q Consensus       282 L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~p~  346 (350)
                      |++++|....+|.... .+++|+.|++++|.++.   +|..+  ..+++|+.|++++|+++.+|.
T Consensus       277 L~L~~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~---~~~~~--~~l~~L~~L~L~~N~i~~~~~  335 (390)
T 3o6n_A          277 LYISNNRLVALNLYGQ-PIPTLKVLDLSHNHLLH---VERNQ--PQFDRLENLYLDHNSIVTLKL  335 (390)
T ss_dssp             EECCSSCCCEEECSSS-CCTTCCEEECCSSCCCC---CGGGH--HHHTTCSEEECCSSCCCCCCC
T ss_pred             EECCCCcCcccCcccC-CCCCCCEEECCCCccee---cCccc--cccCcCCEEECCCCccceeCc
Confidence            7777766655554332 24677777777777765   45555  556777777777777776653

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.93  E-value=5.8e-25  Score=216.56  Aligned_cols=249  Identities=21%  Similarity=0.224  Sum_probs=204.0

Q ss_pred             CCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCc-CCCccccCcccccEEEecCCCCCC--chhhhccCCCc
Q 037732           83 CPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLL-SLPSSLGLLSNLQNLSLYNCKLLD--ITVIRDLKKLA  159 (350)
Q Consensus        83 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~  159 (350)
                      +++|++|++  +.+...+.+|.. +..+++|++|++++|.+. ..|..+..+++|++|++++|.+.+  +..+..+++|+
T Consensus       393 ~~~L~~L~L--~~n~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~  469 (768)
T 3rgz_A          393 KNTLQELYL--QNNGFTGKIPPT-LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLE  469 (768)
T ss_dssp             TCCCCEEEC--CSSEEEEECCGG-GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred             cCCccEEEC--CCCccccccCHH-HhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCce
Confidence            567888888  566655567766 458899999999999887 578889999999999999999886  78889999999


Q ss_pred             EEEecCCCCc-cccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCc
Q 037732          160 VLCLRGSDIK-RLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLI  238 (350)
Q Consensus       160 ~L~l~~~~~~-~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~  238 (350)
                      +|++++|.+. .+|..+.++++|+.|++++|...+.+|.. ++++++|++|++++|.+       .+..|..++.+++|+
T Consensus       470 ~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~L~L~~N~l-------~~~~p~~l~~l~~L~  541 (768)
T 3rgz_A          470 TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW-IGRLENLAILKLSNNSF-------SGNIPAELGDCRSLI  541 (768)
T ss_dssp             EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEEECCSSCC-------EEECCGGGGGCTTCC
T ss_pred             EEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChH-HhcCCCCCEEECCCCcc-------cCcCCHHHcCCCCCC
Confidence            9999999887 67888999999999999997777778877 78999999999999988       678888899999999


Q ss_pred             eeEEEecCCC-CCCccc---------------------------------------------------------------
Q 037732          239 SLELQIQDVN-TFPRGL---------------------------------------------------------------  254 (350)
Q Consensus       239 ~L~l~~~~~~-~l~~~~---------------------------------------------------------------  254 (350)
                      .|++++|.+. .+|..+                                                               
T Consensus       542 ~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~  621 (768)
T 3rgz_A          542 WLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYG  621 (768)
T ss_dssp             EEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEE
T ss_pred             EEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceec
Confidence            9999988753 344322                                                               


Q ss_pred             --------ccCCccEEEEEEcC----cccccccCccceEEEEeCCCcc-cchHHHHHHhcccceeeeccccccchhhhhh
Q 037732          255 --------FLEKLETFKILIGG----VWGWEYADIWCREFKIDLDSKI-RLKDGLILKLEGIEDLWLSYLEEQDVNYFVN  321 (350)
Q Consensus       255 --------~~~~L~~L~l~~~~----~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~  321 (350)
                              .+++|+.|++..+.    ++..++.++.|+.|++++|... .+|..+.. +++|+.|+|++|++++.  +|.
T Consensus       622 g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~-L~~L~~LdLs~N~l~g~--ip~  698 (768)
T 3rgz_A          622 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGD-LRGLNILDLSSNKLDGR--IPQ  698 (768)
T ss_dssp             EECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG-CTTCCEEECCSSCCEEC--CCG
T ss_pred             ccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhC-CCCCCEEECCCCcccCc--CCh
Confidence                    23567778886543    5567888999999999997665 67777765 59999999999999985  888


Q ss_pred             hhcccCcCcceEEEEeCccceeccCC
Q 037732          322 ELVKVGPSQLKHLYIRGSHLTLNPAE  347 (350)
Q Consensus       322 ~l~~~~~~~L~~L~l~~~~~~~~p~~  347 (350)
                      .+  ..+++|+.|++++|++++.+|+
T Consensus       699 ~l--~~l~~L~~L~ls~N~l~g~iP~  722 (768)
T 3rgz_A          699 AM--SALTMLTEIDLSNNNLSGPIPE  722 (768)
T ss_dssp             GG--GGCCCCSEEECCSSEEEEECCS
T ss_pred             HH--hCCCCCCEEECcCCcccccCCC
Confidence            88  7899999999999999875554

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.92  E-value=5.3e-24  Score=190.58  Aligned_cols=255  Identities=17%  Similarity=0.191  Sum_probs=175.9

Q ss_pred             eeeecccccccccccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCC
Q 037732           66 VFSATEEQTNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCK  145 (350)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~  145 (350)
                      .+.+.+..+..++.+..+++|++|++  +.+ ....++.  +..+++|++|++++|.+..++. +..+++|++|++++|.
T Consensus        70 ~L~l~~n~i~~~~~~~~l~~L~~L~L--~~n-~i~~~~~--~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~  143 (347)
T 4fmz_A           70 YLNLNGNQITDISPLSNLVKLTNLYI--GTN-KITDISA--LQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANH  143 (347)
T ss_dssp             EEECCSSCCCCCGGGTTCTTCCEEEC--CSS-CCCCCGG--GTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCT
T ss_pred             EEEccCCccccchhhhcCCcCCEEEc--cCC-cccCchH--HcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCC
Confidence            44555667777777778888888888  443 3444443  5578888888888887776665 6677777777777774


Q ss_pred             CCC-chhhhccCCCcEEEecCCCCccccccccCCCCccEEeccCCCCCCccCcc--------------------hhCCCC
Q 037732          146 LLD-ITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPN--------------------ILSNLS  204 (350)
Q Consensus       146 l~~-~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~--------------------~l~~l~  204 (350)
                      ... ++.+..+++|++|++++|.+..++. +..+++|++|++++|. +..++.-                    .+..++
T Consensus       144 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  221 (347)
T 4fmz_A          144 NLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQ-IEDISPLASLTSLHYFTAYVNQITDITPVANMT  221 (347)
T ss_dssp             TCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSC-CCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCT
T ss_pred             CcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCc-ccccccccCCCccceeecccCCCCCCchhhcCC
Confidence            333 5556666666666666666655543 5556666666665532 2222220                    034556


Q ss_pred             CCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCCCCCCcccccCCccEEEEEEcCccc--ccccCccceEE
Q 037732          205 HLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRGLFLEKLETFKILIGGVWG--WEYADIWCREF  282 (350)
Q Consensus       205 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~--~~~~~~~L~~L  282 (350)
                      +|++|++++|.+..        .+. +..+++|+.|++++|.+..++....+++|++|++..+.+..  .+..+++|+.|
T Consensus       222 ~L~~L~l~~n~l~~--------~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L  292 (347)
T 4fmz_A          222 RLNSLKIGNNKITD--------LSP-LANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSL  292 (347)
T ss_dssp             TCCEEECCSSCCCC--------CGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEE
T ss_pred             cCCEEEccCCccCC--------Ccc-hhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCCChhhcCCCCCCEE
Confidence            66666666665532        222 88899999999999999887543378999999998776543  57789999999


Q ss_pred             EEeCCCcccchHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEeCcccee
Q 037732          283 KIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLTL  343 (350)
Q Consensus       283 ~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~  343 (350)
                      ++++|.....+......+++|+.|++++|.+++.   +. +  ..+++|+.|++++|+++.
T Consensus       293 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~---~~-~--~~l~~L~~L~l~~N~i~~  347 (347)
T 4fmz_A          293 FLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI---RP-L--ASLSKMDSADFANQVIKK  347 (347)
T ss_dssp             ECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCC---GG-G--GGCTTCSEESSSCC----
T ss_pred             ECcCCcCCCcChhHhhccccCCEEEccCCccccc---cC-h--hhhhccceeehhhhcccC
Confidence            9999887766554445579999999999999984   33 5  679999999999999863

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.92  E-value=5.6e-25  Score=216.58  Aligned_cols=259  Identities=12%  Similarity=0.147  Sum_probs=197.6

Q ss_pred             cccccc-ccCCCCCccEEEecccCCcccc-----------------ccChHH-HhcCCcceEEeecCCcCc-CCCccccC
Q 037732           73 QTNLLL-EVVECPQLELLFICADKESSSL-----------------TIPNKF-FERMIQVRVINFSYMNLL-SLPSSLGL  132 (350)
Q Consensus        73 ~~~~~~-~~~~~~~L~~L~l~~~~~~~~~-----------------~~~~~~-~~~l~~L~~L~l~~~~~~-~lp~~l~~  132 (350)
                      .+..+| .+.++++|+.|++  +.+...+                 .+|..+ |.++++|+.|++++|.+. .+|..++.
T Consensus       436 ~L~~IP~~l~~L~~L~~L~L--s~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~  513 (876)
T 4ecn_A          436 RITFISKAIQRLTKLQIIYF--ANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD  513 (876)
T ss_dssp             EEEEECGGGGGCTTCCEEEE--ESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG
T ss_pred             cccchhHHHhcCCCCCEEEC--cCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC
Confidence            444466 4678999999999  6666555                 277765 458999999999999866 58999999


Q ss_pred             cccccEEEecCCC-CCC---chhhhccC-------CCcEEEecCCCCccccc--cccCCCCccEEeccCCCCCCccCcch
Q 037732          133 LSNLQNLSLYNCK-LLD---ITVIRDLK-------KLAVLCLRGSDIKRLPV--EVGELTLLRLLDLRDCMELEVIPPNI  199 (350)
Q Consensus       133 l~~L~~L~l~~~~-l~~---~~~l~~l~-------~L~~L~l~~~~~~~lp~--~l~~l~~L~~L~l~~~~~~~~~~~~~  199 (350)
                      +++|++|++++|+ ++.   |..++.+.       +|++|++++|.+..+|.  .++++++|+.|++++|. +..+| . 
T Consensus       514 L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~-  590 (876)
T 4ecn_A          514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK-VRHLE-A-  590 (876)
T ss_dssp             CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-C-
T ss_pred             CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCC-cccch-h-
Confidence            9999999999998 774   56677666       99999999999999998  89999999999999955 44888 4 


Q ss_pred             hCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCC-CceeEEEecCCCCCCccc-cc--CCccEEEEEEcCcccccc-
Q 037732          200 LSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKH-LISLELQIQDVNTFPRGL-FL--EKLETFKILIGGVWGWEY-  274 (350)
Q Consensus       200 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~l~~~~-~~--~~L~~L~l~~~~~~~~~~-  274 (350)
                      ++++++|++|++++|.+       . .+|..+.++++ |+.|++++|.+..+|..+ ..  ++|+.|++..+.+...+. 
T Consensus       591 ~~~L~~L~~L~Ls~N~l-------~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~  662 (876)
T 4ecn_A          591 FGTNVKLTDLKLDYNQI-------E-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRN  662 (876)
T ss_dssp             CCTTSEESEEECCSSCC-------S-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSS
T ss_pred             hcCCCcceEEECcCCcc-------c-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCcccc
Confidence            89999999999999988       3 66777889998 999999999999888776 33  348888887665422111 


Q ss_pred             --------cCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccchhhhhhhhcc------cCcCcceEEEEeCcc
Q 037732          275 --------ADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVK------VGPSQLKHLYIRGSH  340 (350)
Q Consensus       275 --------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~------~~~~~L~~L~l~~~~  340 (350)
                              .+++|+.|++++|....+|..++..+++|+.|+|++|.++.   +|..+..      .++++|+.|+|++|.
T Consensus       663 l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~---ip~~~~~~~~~~l~nl~~L~~L~Ls~N~  739 (876)
T 4ecn_A          663 ISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTS---IPENSLKPKDGNYKNTYLLTTIDLRFNK  739 (876)
T ss_dssp             CSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSC---CCTTSSSCTTSCCTTGGGCCEEECCSSC
T ss_pred             chhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCc---cChHHhccccccccccCCccEEECCCCC
Confidence                    23478888888877777777776666777777777777764   4443311      112366666666666


Q ss_pred             ceeccCC
Q 037732          341 LTLNPAE  347 (350)
Q Consensus       341 ~~~~p~~  347 (350)
                      ++.+|..
T Consensus       740 L~~lp~~  746 (876)
T 4ecn_A          740 LTSLSDD  746 (876)
T ss_dssp             CCCCCGG
T ss_pred             CccchHH
Confidence            6666543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.92  E-value=4e-24  Score=199.61  Aligned_cols=263  Identities=20%  Similarity=0.139  Sum_probs=180.4

Q ss_pred             eecccccccccccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCC-CccccCcccccEEEecCCCC
Q 037732           68 SATEEQTNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSL-PSSLGLLSNLQNLSLYNCKL  146 (350)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~~~l  146 (350)
                      ...+..+..+|.. -.++++.|++  +.+. ...++...|..+++|++|++++|.+..+ |..|..+++|++|++++|.+
T Consensus        17 ~c~~~~l~~ip~~-~~~~l~~L~L--~~n~-l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l   92 (477)
T 2id5_A           17 LCHRKRFVAVPEG-IPTETRLLDL--GKNR-IKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL   92 (477)
T ss_dssp             ECCSCCCSSCCSC-CCTTCSEEEC--CSSC-CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             EeCCCCcCcCCCC-CCCCCcEEEC--CCCc-cceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcC
Confidence            3345567777752 2368999999  4444 5555544467899999999999999874 77899999999999999999


Q ss_pred             CC-c-hhhhccCCCcEEEecCCCCccc-cccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhh
Q 037732          147 LD-I-TVIRDLKKLAVLCLRGSDIKRL-PVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEV  223 (350)
Q Consensus       147 ~~-~-~~l~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~  223 (350)
                      .. + ..+..+++|++|++++|.+..+ |..+..+++|++|++++|. +..++...+.++++|++|++++|.+..     
T Consensus        93 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~-----  166 (477)
T 2id5_A           93 KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLTLEKCNLTS-----  166 (477)
T ss_dssp             CSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTT-CCEECTTSSTTCTTCCEEEEESCCCSS-----
T ss_pred             CccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCc-cceeChhhccCCCCCCEEECCCCcCcc-----
Confidence            88 4 4578999999999999999865 4578999999999999954 444544348999999999999998843     


Q ss_pred             ccccccchhhcCCCceeEEEecCCCCCCccc--ccCCccEEEEEEcCccc----ccccCccceEEEEeCCCcccchHHHH
Q 037732          224 EGVKNASLHELKHLISLELQIQDVNTFPRGL--FLEKLETFKILIGGVWG----WEYADIWCREFKIDLDSKIRLKDGLI  297 (350)
Q Consensus       224 ~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~~  297 (350)
                        ..+..+.++++|+.|++++|.+..++...  .+++|++|++..+....    ......+|+.|++++|....+|....
T Consensus       167 --~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~  244 (477)
T 2id5_A          167 --IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAV  244 (477)
T ss_dssp             --CCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHH
T ss_pred             --cChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHh
Confidence              33355777888888888888776655433  45667777765543211    11122245555555544444443333


Q ss_pred             HHhcccceeeec------------------------cccccchhhhhhhhcccCcCcceEEEEeCccceeccC
Q 037732          298 LKLEGIEDLWLS------------------------YLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLTLNPA  346 (350)
Q Consensus       298 ~~~~~L~~L~L~------------------------~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~p~  346 (350)
                      ..+++|+.|+|+                        +|.++++  .+..+  ..+++|+.|++++|.++.+|+
T Consensus       245 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~--~~l~~L~~L~L~~N~l~~~~~  313 (477)
T 2id5_A          245 RHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVV--EPYAF--RGLNYLRVLNVSGNQLTTLEE  313 (477)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEE--CTTTB--TTCTTCCEEECCSSCCSCCCG
T ss_pred             cCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceE--CHHHh--cCcccCCEEECCCCcCceeCH
Confidence            334445555554                        4444442  23334  456666677777766666654

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.92  E-value=2.9e-25  Score=214.06  Aligned_cols=260  Identities=11%  Similarity=0.128  Sum_probs=200.7

Q ss_pred             cccccc-ccCCCCCccEEEecccCCccccc-----------------cChHHH-hcCCcceEEeecCCcCc-CCCccccC
Q 037732           73 QTNLLL-EVVECPQLELLFICADKESSSLT-----------------IPNKFF-ERMIQVRVINFSYMNLL-SLPSSLGL  132 (350)
Q Consensus        73 ~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~-----------------~~~~~~-~~l~~L~~L~l~~~~~~-~lp~~l~~  132 (350)
                      .+..+| .+.++++|++|++  +.+...+.                 +|..+. .++++|++|++++|.+. .+|..+++
T Consensus       194 ~l~~ip~~l~~l~~L~~L~L--s~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~  271 (636)
T 4eco_A          194 NITFVSKAVMRLTKLRQFYM--GNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA  271 (636)
T ss_dssp             EEEEECGGGGGCTTCCEEEE--ESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT
T ss_pred             CCccCCHHHhcccCCCEEEC--cCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhc
Confidence            444566 4678999999999  66665553                 776641 27999999999999876 58999999


Q ss_pred             cccccEEEecCCC-CCC---chhhhcc------CCCcEEEecCCCCccccc--cccCCCCccEEeccCCCCCCccCcchh
Q 037732          133 LSNLQNLSLYNCK-LLD---ITVIRDL------KKLAVLCLRGSDIKRLPV--EVGELTLLRLLDLRDCMELEVIPPNIL  200 (350)
Q Consensus       133 l~~L~~L~l~~~~-l~~---~~~l~~l------~~L~~L~l~~~~~~~lp~--~l~~l~~L~~L~l~~~~~~~~~~~~~l  200 (350)
                      +++|++|++++|. +++   |..++.+      ++|++|++++|.+..+|.  .++++++|++|++++|...+.+| . +
T Consensus       272 l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~-~  349 (636)
T 4eco_A          272 LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-A-F  349 (636)
T ss_dssp             CSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-C-C
T ss_pred             CCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-h-h
Confidence            9999999999998 874   6777776      999999999999999998  89999999999999966555888 4 7


Q ss_pred             CCCCCCcEEEcCCCCCCcchhhhccccccchhhcCC-CceeEEEecCCCCCCccc-c--cCCccEEEEEEcCcc----cc
Q 037732          201 SNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKH-LISLELQIQDVNTFPRGL-F--LEKLETFKILIGGVW----GW  272 (350)
Q Consensus       201 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~l~~~~-~--~~~L~~L~l~~~~~~----~~  272 (350)
                      +++++|++|++++|.+       . .+|..+..+++ |+.|++++|.+..+|..+ .  +++|++|++..+.+.    ..
T Consensus       350 ~~l~~L~~L~L~~N~l-------~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~  421 (636)
T 4eco_A          350 GSEIKLASLNLAYNQI-------T-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN  421 (636)
T ss_dssp             EEEEEESEEECCSSEE-------E-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCS
T ss_pred             CCCCCCCEEECCCCcc-------c-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhh
Confidence            8999999999999887       3 66777899998 999999999999988876 3  347888888766543    33


Q ss_pred             cc-------cCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccchhhhhhhhcc------cCcCcceEEEEeCc
Q 037732          273 EY-------ADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVK------VGPSQLKHLYIRGS  339 (350)
Q Consensus       273 ~~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~------~~~~~L~~L~l~~~  339 (350)
                      +.       .+++|+.|++++|....+|..++..+++|+.|+|++|.++.   +|.....      ..+++|+.|++++|
T Consensus       422 l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~---i~~~~~~~~~~~~~~l~~L~~L~Ls~N  498 (636)
T 4eco_A          422 FDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTE---IPKNSLKDENENFKNTYLLTSIDLRFN  498 (636)
T ss_dssp             SCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSB---CCSSSSEETTEECTTGGGCCEEECCSS
T ss_pred             hcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCC---cCHHHhccccccccccCCccEEECcCC
Confidence            44       56688888888888778887777666788888888777775   4433211      01226666666666


Q ss_pred             cceeccCC
Q 037732          340 HLTLNPAE  347 (350)
Q Consensus       340 ~~~~~p~~  347 (350)
                      .++.+|+.
T Consensus       499 ~l~~lp~~  506 (636)
T 4eco_A          499 KLTKLSDD  506 (636)
T ss_dssp             CCCBCCGG
T ss_pred             cCCccChh
Confidence            66665543

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.92  E-value=2.3e-25  Score=196.44  Aligned_cols=243  Identities=12%  Similarity=0.123  Sum_probs=201.1

Q ss_pred             CCccEEEecccCCcccc--ccChHHHhcCCcceEEeecC-CcCc-CCCccccCcccccEEEecCCCCCC--chhhhccCC
Q 037732           84 PQLELLFICADKESSSL--TIPNKFFERMIQVRVINFSY-MNLL-SLPSSLGLLSNLQNLSLYNCKLLD--ITVIRDLKK  157 (350)
Q Consensus        84 ~~L~~L~l~~~~~~~~~--~~~~~~~~~l~~L~~L~l~~-~~~~-~lp~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~  157 (350)
                      .+++.|++  +.+...+  .+|.. +.++++|++|++++ +.+. .+|..+..+++|++|++++|.+..  +..+..+++
T Consensus        50 ~~l~~L~L--~~~~l~~~~~~~~~-l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~  126 (313)
T 1ogq_A           50 YRVNNLDL--SGLNLPKPYPIPSS-LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT  126 (313)
T ss_dssp             CCEEEEEE--ECCCCSSCEECCGG-GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTT
T ss_pred             ceEEEEEC--CCCCccCCcccChh-HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCC
Confidence            58999999  6666655  67776 45899999999995 7777 589999999999999999999985  788999999


Q ss_pred             CcEEEecCCCCc-cccccccCCCCccEEeccCCCCCCccCcchhCCCC-CCcEEEcCCCCCCcchhhhccccccchhhcC
Q 037732          158 LAVLCLRGSDIK-RLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLS-HLEELYMGPRSFDKWEVEVEGVKNASLHELK  235 (350)
Q Consensus       158 L~~L~l~~~~~~-~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~  235 (350)
                      |++|++++|.+. .+|..+..+++|++|++++|...+.+|.. ++.++ +|++|++++|.+       .+..|..+..++
T Consensus       127 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l-------~~~~~~~~~~l~  198 (313)
T 1ogq_A          127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRL-------TGKIPPTFANLN  198 (313)
T ss_dssp             CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEE-------EEECCGGGGGCC
T ss_pred             CCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCee-------eccCChHHhCCc
Confidence            999999999888 78889999999999999996655578877 78887 999999999988       667788888887


Q ss_pred             CCceeEEEecCCCC-CCccc-ccCCccEEEEEEcCc---ccccccCccceEEEEeCCCcc-cchHHHHHHhcccceeeec
Q 037732          236 HLISLELQIQDVNT-FPRGL-FLEKLETFKILIGGV---WGWEYADIWCREFKIDLDSKI-RLKDGLILKLEGIEDLWLS  309 (350)
Q Consensus       236 ~L~~L~l~~~~~~~-l~~~~-~~~~L~~L~l~~~~~---~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~L~  309 (350)
                       |+.|++++|.+.. .|..+ .+++|+.|++..+.+   ...+..+++|++|++++|... ..|.++.. +++|+.|+++
T Consensus       199 -L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~-l~~L~~L~Ls  276 (313)
T 1ogq_A          199 -LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQ-LKFLHSLNVS  276 (313)
T ss_dssp             -CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGG-CTTCCEEECC
T ss_pred             -ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhc-CcCCCEEECc
Confidence             9999999998864 44444 688999999965543   234667889999999998776 67766665 6999999999


Q ss_pred             cccccchhhhhhhhcccCcCcceEEEEeCccceec
Q 037732          310 YLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLTLN  344 (350)
Q Consensus       310 ~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~  344 (350)
                      +|.+++.  +|. .  ..+++|+.|++.+|+..+-
T Consensus       277 ~N~l~~~--ip~-~--~~l~~L~~l~l~~N~~lc~  306 (313)
T 1ogq_A          277 FNNLCGE--IPQ-G--GNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             SSEEEEE--CCC-S--TTGGGSCGGGTCSSSEEES
T ss_pred             CCccccc--CCC-C--ccccccChHHhcCCCCccC
Confidence            9999873  554 3  5789999999999995554

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.92  E-value=7.1e-24  Score=192.81  Aligned_cols=264  Identities=17%  Similarity=0.177  Sum_probs=190.4

Q ss_pred             eeeecccccccccc--cCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCC-ccccCcccccEEEec
Q 037732           66 VFSATEEQTNLLLE--VVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLP-SSLGLLSNLQNLSLY  142 (350)
Q Consensus        66 ~~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~l~~l~~L~~L~l~  142 (350)
                      .+.+.+..+..+|.  +..+++|++|++  +.+ ....++...+..+++|++|++++|.+..++ ..+..+++|++|+++
T Consensus        49 ~l~l~~~~l~~l~~~~~~~l~~L~~L~L--~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  125 (390)
T 3o6n_A           49 IVTFKNSTMRKLPAALLDSFRQVELLNL--NDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE  125 (390)
T ss_dssp             EEEEESCEESEECTHHHHHCCCCSEEEC--TTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             EEEecCCchhhCChhHhcccccCcEEEC--CCC-cccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECC
Confidence            34455566777775  457788999988  444 345555544668888999999988888754 457888889999999


Q ss_pred             CCCCCC-chh-hhccCCCcEEEecCCCCccccc-cccCCCCccEEeccCCCCCCccCcchhCCCCCC-------------
Q 037732          143 NCKLLD-ITV-IRDLKKLAVLCLRGSDIKRLPV-EVGELTLLRLLDLRDCMELEVIPPNILSNLSHL-------------  206 (350)
Q Consensus       143 ~~~l~~-~~~-l~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L-------------  206 (350)
                      +|.+.. +.. +..+++|++|++++|.+..++. .+..+++|++|++++|. +..++.   ..+++|             
T Consensus       126 ~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~---~~l~~L~~L~l~~n~l~~~  201 (390)
T 3o6n_A          126 RNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVDL---SLIPSLFHANVSYNLLSTL  201 (390)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC-CSBCCG---GGCTTCSEEECCSSCCSEE
T ss_pred             CCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCc-CCcccc---ccccccceeeccccccccc
Confidence            988888 444 5788889999998888886654 57888888888888843 333332   222333             


Q ss_pred             ------cEEEcCCCCCCcchhhh---------cc---ccccchhhcCCCceeEEEecCCCCC-Cccc-ccCCccEEEEEE
Q 037732          207 ------EELYMGPRSFDKWEVEV---------EG---VKNASLHELKHLISLELQIQDVNTF-PRGL-FLEKLETFKILI  266 (350)
Q Consensus       207 ------~~L~l~~~~~~~~~~~~---------~~---~~~~~l~~l~~L~~L~l~~~~~~~l-~~~~-~~~~L~~L~l~~  266 (350)
                            ++|++++|.+...+...         .+   .....+..+++|+.|++++|.+..+ |..+ .+++|++|++..
T Consensus       202 ~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  281 (390)
T 3o6n_A          202 AIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN  281 (390)
T ss_dssp             ECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCS
T ss_pred             CCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCC
Confidence                  33333333322111000         00   1124588899999999999998876 4455 689999999977


Q ss_pred             cCccc---ccccCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEeCcccee
Q 037732          267 GGVWG---WEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLTL  343 (350)
Q Consensus       267 ~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~  343 (350)
                      +.+..   ....+++|+.|++++|....+|..+.. +++|+.|++++|.++.+   +  +  ..+++|+.|++++|++.+
T Consensus       282 n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-l~~L~~L~L~~N~i~~~---~--~--~~~~~L~~L~l~~N~~~~  353 (390)
T 3o6n_A          282 NRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQ-FDRLENLYLDHNSIVTL---K--L--STHHTLKNLTLSHNDWDC  353 (390)
T ss_dssp             SCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHH-HTTCSEEECCSSCCCCC---C--C--CTTCCCSEEECCSSCEEH
T ss_pred             CcCcccCcccCCCCCCCEEECCCCcceecCccccc-cCcCCEEECCCCcccee---C--c--hhhccCCEEEcCCCCccc
Confidence            66433   456789999999999998889888765 69999999999999883   3  4  678999999999999987


Q ss_pred             c
Q 037732          344 N  344 (350)
Q Consensus       344 ~  344 (350)
                      .
T Consensus       354 ~  354 (390)
T 3o6n_A          354 N  354 (390)
T ss_dssp             H
T ss_pred             h
Confidence            4

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.92  E-value=9.7e-25  Score=194.20  Aligned_cols=252  Identities=15%  Similarity=0.175  Sum_probs=149.6

Q ss_pred             cccccccccccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCC-CccccCcccccEEEecCCCCCC
Q 037732           70 TEEQTNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSL-PSSLGLLSNLQNLSLYNCKLLD  148 (350)
Q Consensus        70 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~~~l~~  148 (350)
                      .+..+..+|... .++++.|++  +.+. ...++...+..+++|++|++++|.+..+ |..+..+++|++|++++|.+..
T Consensus        41 ~~~~l~~ip~~~-~~~l~~L~l--~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  116 (332)
T 2ft3_A           41 SDLGLKAVPKEI-SPDTTLLDL--QNND-ISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE  116 (332)
T ss_dssp             CSSCCSSCCSCC-CTTCCEEEC--CSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCS
T ss_pred             CCCCccccCCCC-CCCCeEEEC--CCCc-CCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCc
Confidence            344455555322 356666666  3333 3344333345666677777776666653 5566666677777777666665


Q ss_pred             -chhhhccCCCcEEEecCCCCcccccc-ccCCCCccEEeccCCCCCC--ccCcchhCCCCCCcEEEcCCCCCCcchhhhc
Q 037732          149 -ITVIRDLKKLAVLCLRGSDIKRLPVE-VGELTLLRLLDLRDCMELE--VIPPNILSNLSHLEELYMGPRSFDKWEVEVE  224 (350)
Q Consensus       149 -~~~l~~l~~L~~L~l~~~~~~~lp~~-l~~l~~L~~L~l~~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~  224 (350)
                       +..+.  ++|++|++++|.+..+|.. +..+++|++|++++|....  ..+.. +..+ +|++|++++|.+..      
T Consensus       117 l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~l-~L~~L~l~~n~l~~------  186 (332)
T 2ft3_A          117 IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGA-FDGL-KLNYLRISEAKLTG------  186 (332)
T ss_dssp             CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTS-SCSC-CCSCCBCCSSBCSS------
T ss_pred             cCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCccc-ccCC-ccCEEECcCCCCCc------
Confidence             43333  5667777766666666543 5666677777776643321  22222 4445 66666666666532      


Q ss_pred             cccccchhhcCCCceeEEEecCCCCCCc-cc-ccCCccEEEEEEcCcc----cccccCccceEEEEeCCCcccchHHHHH
Q 037732          225 GVKNASLHELKHLISLELQIQDVNTFPR-GL-FLEKLETFKILIGGVW----GWEYADIWCREFKIDLDSKIRLKDGLIL  298 (350)
Q Consensus       225 ~~~~~~l~~l~~L~~L~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~  298 (350)
                        +|..+.  ++|+.|++++|.+..++. .+ .+++|++|++..+.+.    ..+..+++|+.|++++|....+|.++..
T Consensus       187 --l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~  262 (332)
T 2ft3_A          187 --IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPD  262 (332)
T ss_dssp             --CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGG
T ss_pred             --cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhc
Confidence              222222  567777777777766653 33 5677777777655432    2466777788888887777777766544


Q ss_pred             Hhcccceeeeccccccchhhhhhhhcc----cCcCcceEEEEeCccce
Q 037732          299 KLEGIEDLWLSYLEEQDVNYFVNELVK----VGPSQLKHLYIRGSHLT  342 (350)
Q Consensus       299 ~~~~L~~L~L~~n~l~~~~~~~~~l~~----~~~~~L~~L~l~~~~~~  342 (350)
                       +++|+.|++++|.++++  -+..+..    ..+++|+.|++.+|++.
T Consensus       263 -l~~L~~L~l~~N~l~~~--~~~~~~~~~~~~~~~~l~~L~l~~N~~~  307 (332)
T 2ft3_A          263 -LKLLQVVYLHTNNITKV--GVNDFCPVGFGVKRAYYNGISLFNNPVP  307 (332)
T ss_dssp             -CTTCCEEECCSSCCCBC--CTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred             -CccCCEEECCCCCCCcc--ChhHccccccccccccccceEeecCccc
Confidence             57788888888877763  1122211    11467778888888776

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=2e-24  Score=206.93  Aligned_cols=254  Identities=15%  Similarity=0.136  Sum_probs=167.7

Q ss_pred             CCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCC-ccccCcccccEEEecCCCCCC--chhhhccCCC
Q 037732           82 ECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLP-SSLGLLSNLQNLSLYNCKLLD--ITVIRDLKKL  158 (350)
Q Consensus        82 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L  158 (350)
                      .+++++.+.+   .+.....+|..++..+++|++|++++|.+..++ ..|..+++|++|++++|.+..  +..++.+++|
T Consensus        49 ~l~~l~~l~l---~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  125 (597)
T 3oja_B           49 TLNNQKIVTF---KNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL  125 (597)
T ss_dssp             GGCCCSEEEE---SSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             cCCCceEEEe---eCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCC
Confidence            4577888888   455567788877788888999999888888654 478888889999998888877  3557888888


Q ss_pred             cEEEecCCCCcccccc-ccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhcc---------ccc
Q 037732          159 AVLCLRGSDIKRLPVE-VGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEG---------VKN  228 (350)
Q Consensus       159 ~~L~l~~~~~~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~---------~~~  228 (350)
                      ++|++++|.+..+|.. ++++++|++|++++|. +..+++..++++++|++|++++|.+...+.....         ...
T Consensus       126 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l  204 (597)
T 3oja_B          126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLL  204 (597)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCC
T ss_pred             CEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCcc
Confidence            9999888888888876 4788888888888854 4444443378888888888888877543310000         000


Q ss_pred             cchhhcC---------------------CCceeEEEecCCCCCCccc-ccCCccEEEEEEcCc----ccccccCccceEE
Q 037732          229 ASLHELK---------------------HLISLELQIQDVNTFPRGL-FLEKLETFKILIGGV----WGWEYADIWCREF  282 (350)
Q Consensus       229 ~~l~~l~---------------------~L~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~----~~~~~~~~~L~~L  282 (350)
                      ..+...+                     +|+.|++++|.+... ..+ .+++|+.|++..+.+    +..++.+++|+.|
T Consensus       205 ~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  283 (597)
T 3oja_B          205 STLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERL  283 (597)
T ss_dssp             SEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEE
T ss_pred             ccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEE
Confidence            0111122                     344444444444443 222 456666666655443    2345566677777


Q ss_pred             EEeCCCcccchHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEeCccceeccC
Q 037732          283 KIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLTLNPA  346 (350)
Q Consensus       283 ~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~p~  346 (350)
                      ++++|....+|..+. .+++|+.|+|++|.++.   +|..+  ..+++|+.|++++|+++.+|.
T Consensus       284 ~Ls~N~l~~l~~~~~-~l~~L~~L~Ls~N~l~~---i~~~~--~~l~~L~~L~L~~N~l~~~~~  341 (597)
T 3oja_B          284 YISNNRLVALNLYGQ-PIPTLKVLDLSHNHLLH---VERNQ--PQFDRLENLYLDHNSIVTLKL  341 (597)
T ss_dssp             ECTTSCCCEEECSSS-CCTTCCEEECCSSCCCC---CGGGH--HHHTTCSEEECCSSCCCCCCC
T ss_pred             ECCCCCCCCCCcccc-cCCCCcEEECCCCCCCc---cCccc--ccCCCCCEEECCCCCCCCcCh
Confidence            777766655554432 24677777777777765   55555  556777777777777766653

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.92  E-value=2.8e-24  Score=204.14  Aligned_cols=178  Identities=16%  Similarity=0.147  Sum_probs=124.4

Q ss_pred             ecccccccccccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCC-CccccCcccccEEEecCCCCC
Q 037732           69 ATEEQTNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSL-PSSLGLLSNLQNLSLYNCKLL  147 (350)
Q Consensus        69 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~~~l~  147 (350)
                      .+...+..+|... .+++++|++  +.+.. ..++...+..+++|++|++++|.+..+ |..|..+++|++|++++|.+.
T Consensus        12 ~~~~~l~~ip~~~-~~~L~~L~L--s~n~l-~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~   87 (549)
T 2z81_A           12 GRSRSFTSIPSGL-TAAMKSLDL--SFNKI-TYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS   87 (549)
T ss_dssp             CTTSCCSSCCSCC-CTTCCEEEC--CSSCC-CEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred             CCCCccccccccC-CCCccEEEC--cCCcc-CccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccC
Confidence            3445667777532 378899999  55543 444333356888999999999988864 467888899999999999888


Q ss_pred             C-c-hhhhccCCCcEEEecCCCCcc--ccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhh
Q 037732          148 D-I-TVIRDLKKLAVLCLRGSDIKR--LPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEV  223 (350)
Q Consensus       148 ~-~-~~l~~l~~L~~L~l~~~~~~~--lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~  223 (350)
                      . + ..++.+++|++|++++|.+..  .|..++++++|++|++++|...+.++...+.++++|++|++++|.+.......
T Consensus        88 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  167 (549)
T 2z81_A           88 SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS  167 (549)
T ss_dssp             SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT
T ss_pred             ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh
Confidence            7 4 448889999999999988874  45678888999999998876677777544788888999988888774321100


Q ss_pred             cc----------------ccccc-hhhcCCCceeEEEecCCCCC
Q 037732          224 EG----------------VKNAS-LHELKHLISLELQIQDVNTF  250 (350)
Q Consensus       224 ~~----------------~~~~~-l~~l~~L~~L~l~~~~~~~l  250 (350)
                      .+                ..+.. +..+++|+.|++++|.+..+
T Consensus       168 l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~  211 (549)
T 2z81_A          168 LKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARF  211 (549)
T ss_dssp             TTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTC
T ss_pred             hhccccCceEecccCcccccchhhHhhcccccEEEccCCccccc
Confidence            00                01111 23466777777777776543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.92  E-value=2.7e-24  Score=211.83  Aligned_cols=222  Identities=17%  Similarity=0.080  Sum_probs=149.9

Q ss_pred             cceEEeecCCcCc-CCCccccCcccccEEEecCCCCCC--chhhhccCCCcEEEecCCCCc-cccccccCCCCccEEecc
Q 037732          112 QVRVINFSYMNLL-SLPSSLGLLSNLQNLSLYNCKLLD--ITVIRDLKKLAVLCLRGSDIK-RLPVEVGELTLLRLLDLR  187 (350)
Q Consensus       112 ~L~~L~l~~~~~~-~lp~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~l~~~~~~-~lp~~l~~l~~L~~L~l~  187 (350)
                      +|+.|++++|.+. .+|..++.+++|++|++++|.+.+  +..++.+++|++|++++|.+. .+|..+..+++|+.|+++
T Consensus       395 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~  474 (768)
T 3rgz_A          395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD  474 (768)
T ss_dssp             CCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred             CccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEec
Confidence            3444444444444 345555666666666666666554  556666666666666666655 556666666667777776


Q ss_pred             CCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCCC-CCCccc-ccCCccEEEEE
Q 037732          188 DCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVN-TFPRGL-FLEKLETFKIL  265 (350)
Q Consensus       188 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~l~~~~-~~~~L~~L~l~  265 (350)
                      +|...+.+|.. ++++++|++|++++|.+       .+.+|..++.+++|+.|++++|.+. .+|..+ .+++|+.|++.
T Consensus       475 ~N~l~~~~p~~-l~~l~~L~~L~L~~N~l-------~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls  546 (768)
T 3rgz_A          475 FNDLTGEIPSG-LSNCTNLNWISLSNNRL-------TGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN  546 (768)
T ss_dssp             SSCCCSCCCGG-GGGCTTCCEEECCSSCC-------CSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECC
T ss_pred             CCcccCcCCHH-HhcCCCCCEEEccCCcc-------CCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECC
Confidence            65555555555 56677777777777766       5567777778888888888888775 566666 67788888774


Q ss_pred             EcC----ccc----------------------------------------------------------------------
Q 037732          266 IGG----VWG----------------------------------------------------------------------  271 (350)
Q Consensus       266 ~~~----~~~----------------------------------------------------------------------  271 (350)
                      .+.    ++.                                                                      
T Consensus       547 ~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~  626 (768)
T 3rgz_A          547 TNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSP  626 (768)
T ss_dssp             SSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCC
T ss_pred             CCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCch
Confidence            321    111                                                                      


Q ss_pred             ccccCccceEEEEeCCCcc-cchHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEeCccceeccC
Q 037732          272 WEYADIWCREFKIDLDSKI-RLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLTLNPA  346 (350)
Q Consensus       272 ~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~p~  346 (350)
                      .++.+++|+.|++++|... .+|..+.. +++|+.|+|++|.+++.  +|..+  +.+++|+.|+|++|++++.++
T Consensus       627 ~~~~l~~L~~LdLs~N~l~g~ip~~l~~-l~~L~~L~Ls~N~l~g~--ip~~l--~~L~~L~~LdLs~N~l~g~ip  697 (768)
T 3rgz_A          627 TFDNNGSMMFLDMSYNMLSGYIPKEIGS-MPYLFILNLGHNDISGS--IPDEV--GDLRGLNILDLSSNKLDGRIP  697 (768)
T ss_dssp             SCSSSBCCCEEECCSSCCBSCCCGGGGG-CTTCCEEECCSSCCCSC--CCGGG--GGCTTCCEEECCSSCCEECCC
T ss_pred             hhhccccccEEECcCCcccccCCHHHhc-cccCCEEeCcCCccCCC--CChHH--hCCCCCCEEECCCCcccCcCC
Confidence            1233567888888886654 57766665 68999999999999874  88888  789999999999999985443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.92  E-value=5.4e-25  Score=193.60  Aligned_cols=229  Identities=17%  Similarity=0.121  Sum_probs=124.3

Q ss_pred             CCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCC---CccccCcccccEEEecCCCCCC-chhhhccCCCc
Q 037732           84 PQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSL---PSSLGLLSNLQNLSLYNCKLLD-ITVIRDLKKLA  159 (350)
Q Consensus        84 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l---p~~l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~  159 (350)
                      +++++|++  +. +....+|..++..+++|++|++++|.+...   +..+..+++|++|++++|.+.. +..+..+++|+
T Consensus        28 ~~l~~L~L--~~-n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~  104 (306)
T 2z66_A           28 SSATRLEL--ES-NKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLE  104 (306)
T ss_dssp             TTCCEEEC--CS-SCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCC
T ss_pred             CCCCEEEC--CC-CccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCC
Confidence            35555555  22 223344444444555555555555554432   3344445555555555555444 34455555555


Q ss_pred             EEEecCCCCccccc--cccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhcc-ccccchhhcCC
Q 037732          160 VLCLRGSDIKRLPV--EVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEG-VKNASLHELKH  236 (350)
Q Consensus       160 ~L~l~~~~~~~lp~--~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~~l~~l~~  236 (350)
                      +|++++|.+..++.  .+..+++|++|++++|......+.. +.++++|++|++++|.+       .+ ..|..+..+++
T Consensus       105 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l-------~~~~~~~~~~~l~~  176 (306)
T 2z66_A          105 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI-FNGLSSLEVLKMAGNSF-------QENFLPDIFTELRN  176 (306)
T ss_dssp             EEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTT-TTTCTTCCEEECTTCEE-------GGGEECSCCTTCTT
T ss_pred             EEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhh-cccCcCCCEEECCCCcc-------ccccchhHHhhCcC
Confidence            55555555554432  3455555555555553322222222 44555555555555544       12 23444555555


Q ss_pred             CceeEEEecCCCCCCcccccCCccEEEEEEcCcccccccCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccch
Q 037732          237 LISLELQIQDVNTFPRGLFLEKLETFKILIGGVWGWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDV  316 (350)
Q Consensus       237 L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~  316 (350)
                      |+.|++++|.+..++.                  ..+..+++|+.|++++|....++......+++|+.|++++|.+++.
T Consensus       177 L~~L~Ls~n~l~~~~~------------------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  238 (306)
T 2z66_A          177 LTFLDLSQCQLEQLSP------------------TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS  238 (306)
T ss_dssp             CCEEECTTSCCCEECT------------------TTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBC
T ss_pred             CCEEECCCCCcCCcCH------------------HHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCccc
Confidence            5555555555444322                  2455677788888888766665543333468888888888888774


Q ss_pred             hhhhhhhcccCcC-cceEEEEeCccceecc
Q 037732          317 NYFVNELVKVGPS-QLKHLYIRGSHLTLNP  345 (350)
Q Consensus       317 ~~~~~~l~~~~~~-~L~~L~l~~~~~~~~p  345 (350)
                        .+..+  ..++ +|+.|++++|++++..
T Consensus       239 --~~~~~--~~~~~~L~~L~L~~N~~~~~c  264 (306)
T 2z66_A          239 --KKQEL--QHFPSSLAFLNLTQNDFACTC  264 (306)
T ss_dssp             --SSSSC--CCCCTTCCEEECTTCCEECSG
T ss_pred             --CHHHH--HhhhccCCEEEccCCCeeccc
Confidence              45555  5564 8888888888887653

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.91  E-value=1.8e-24  Score=190.80  Aligned_cols=223  Identities=18%  Similarity=0.167  Sum_probs=190.8

Q ss_pred             CcceEEeecCCcCc---CCCccccCcccccEEEecC-CCCCC--chhhhccCCCcEEEecCCCCc-cccccccCCCCccE
Q 037732          111 IQVRVINFSYMNLL---SLPSSLGLLSNLQNLSLYN-CKLLD--ITVIRDLKKLAVLCLRGSDIK-RLPVEVGELTLLRL  183 (350)
Q Consensus       111 ~~L~~L~l~~~~~~---~lp~~l~~l~~L~~L~l~~-~~l~~--~~~l~~l~~L~~L~l~~~~~~-~lp~~l~~l~~L~~  183 (350)
                      .+++.|+++++.+.   .+|..+..+++|++|++++ |.+.+  |..++++++|++|++++|.+. .+|..+.++++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            57999999999988   4899999999999999995 77765  788999999999999999998 88889999999999


Q ss_pred             EeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcC-CCceeEEEecCCC-CCCccc-ccCCcc
Q 037732          184 LDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELK-HLISLELQIQDVN-TFPRGL-FLEKLE  260 (350)
Q Consensus       184 L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~-~l~~~~-~~~~L~  260 (350)
                      |++++|.....+|.. ++++++|++|++++|.+       .+.+|..+..++ +|+.|++++|.+. .+|..+ .+. |+
T Consensus       130 L~Ls~N~l~~~~p~~-~~~l~~L~~L~L~~N~l-------~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~  200 (313)
T 1ogq_A          130 LDFSYNALSGTLPPS-ISSLPNLVGITFDGNRI-------SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LA  200 (313)
T ss_dssp             EECCSSEEESCCCGG-GGGCTTCCEEECCSSCC-------EEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CS
T ss_pred             EeCCCCccCCcCChH-HhcCCCCCeEECcCCcc-------cCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-cc
Confidence            999997666577877 79999999999999998       667888899998 9999999999986 667776 444 99


Q ss_pred             EEEEEEcC----cccccccCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEE
Q 037732          261 TFKILIGG----VWGWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYI  336 (350)
Q Consensus       261 ~L~l~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l  336 (350)
                      +|++..+.    .+..+..+++|+.|++++|.....+..+. .+++|+.|++++|.+++.  +|..+  ..+++|+.|++
T Consensus       201 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-~l~~L~~L~Ls~N~l~~~--~p~~l--~~l~~L~~L~L  275 (313)
T 1ogq_A          201 FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVG-LSKNLNGLDLRNNRIYGT--LPQGL--TQLKFLHSLNV  275 (313)
T ss_dssp             EEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCC-CCTTCCEEECCSSCCEEC--CCGGG--GGCTTCCEEEC
T ss_pred             EEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCccc-ccCCCCEEECcCCcccCc--CChHH--hcCcCCCEEEC
Confidence            99996543    44568889999999999987765544433 469999999999999874  78888  78999999999


Q ss_pred             eCcccee-ccCC
Q 037732          337 RGSHLTL-NPAE  347 (350)
Q Consensus       337 ~~~~~~~-~p~~  347 (350)
                      ++|++++ +|+.
T Consensus       276 s~N~l~~~ip~~  287 (313)
T 1ogq_A          276 SFNNLCGEIPQG  287 (313)
T ss_dssp             CSSEEEEECCCS
T ss_pred             cCCcccccCCCC
Confidence            9999994 5543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.91  E-value=4.1e-24  Score=197.46  Aligned_cols=223  Identities=17%  Similarity=0.168  Sum_probs=129.3

Q ss_pred             CcceEEeecCCcCcCC-CccccCcccccEEEecCCCCCC--chhhhccCCCcEEEecCCCCccccc-cccCCCCccEEec
Q 037732          111 IQVRVINFSYMNLLSL-PSSLGLLSNLQNLSLYNCKLLD--ITVIRDLKKLAVLCLRGSDIKRLPV-EVGELTLLRLLDL  186 (350)
Q Consensus       111 ~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l  186 (350)
                      ++++.|++++|.+..+ +..|..+++|++|++++|.+..  +..+..+++|++|++++|.+..+|. .+..+++|++|++
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  143 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL  143 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence            4455555555555542 2345555555555555555554  2445555555555555555555544 3555555555555


Q ss_pred             cCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCCCCCCcccccCCccEEEEEE
Q 037732          187 RDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRGLFLEKLETFKILI  266 (350)
Q Consensus       187 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~  266 (350)
                      ++ +.+..++...+.++++|++|+++++...      ....+..+.++++|+.|++++|.+..+|....+++|+.|++..
T Consensus       144 ~~-N~i~~~~~~~~~~l~~L~~L~l~~~~~l------~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~  216 (440)
T 3zyj_A          144 RN-NPIESIPSYAFNRIPSLRRLDLGELKRL------SYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSG  216 (440)
T ss_dssp             CS-CCCCEECTTTTTTCTTCCEEECCCCTTC------CEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTT
T ss_pred             CC-CcccccCHHHhhhCcccCEeCCCCCCCc------ceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCC
Confidence            55 2334444433555555555555553321      1111223555555555555555555555322455555555544


Q ss_pred             cCc----ccccccCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEeCccce
Q 037732          267 GGV----WGWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLT  342 (350)
Q Consensus       267 ~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~  342 (350)
                      +.+    +..+..+++|+.|++++|....++...+..+++|+.|+|++|.++.+  .+..+  ..+++|+.|+|++|++.
T Consensus       217 N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~--~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          217 NHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLL--PHDLF--TPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCC--CTTTT--SSCTTCCEEECCSSCEE
T ss_pred             CccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCcc--ChhHh--ccccCCCEEEcCCCCcc
Confidence            332    22466778888888888777766554444568999999999988873  23344  67889999999999887


Q ss_pred             ec
Q 037732          343 LN  344 (350)
Q Consensus       343 ~~  344 (350)
                      +.
T Consensus       293 Cd  294 (440)
T 3zyj_A          293 CN  294 (440)
T ss_dssp             CS
T ss_pred             CC
Confidence            63

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.91  E-value=5.5e-24  Score=197.30  Aligned_cols=223  Identities=17%  Similarity=0.137  Sum_probs=138.2

Q ss_pred             CcceEEeecCCcCcCC-CccccCcccccEEEecCCCCCC--chhhhccCCCcEEEecCCCCcccccc-ccCCCCccEEec
Q 037732          111 IQVRVINFSYMNLLSL-PSSLGLLSNLQNLSLYNCKLLD--ITVIRDLKKLAVLCLRGSDIKRLPVE-VGELTLLRLLDL  186 (350)
Q Consensus       111 ~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~l~~~~~~~lp~~-l~~l~~L~~L~l  186 (350)
                      ++++.|++++|.+..+ |..|..+++|++|++++|.+..  +..+..+++|++|++++|.+..+|.. +..+++|++|++
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  154 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL  154 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence            4566666666666543 4455666666666666666555  34556666666666666666655543 555666666666


Q ss_pred             cCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCCCCCCcccccCCccEEEEEE
Q 037732          187 RDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRGLFLEKLETFKILI  266 (350)
Q Consensus       187 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~  266 (350)
                      ++ +.+..++...+.++++|++|++++|...      ....+..+.++++|+.|++++|.+..+|....+++|+.|++..
T Consensus       155 ~~-N~l~~~~~~~~~~l~~L~~L~l~~~~~l------~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~  227 (452)
T 3zyi_A          155 RN-NPIESIPSYAFNRVPSLMRLDLGELKKL------EYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSG  227 (452)
T ss_dssp             CS-CCCCEECTTTTTTCTTCCEEECCCCTTC------CEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTT
T ss_pred             CC-CCcceeCHhHHhcCCcccEEeCCCCCCc------cccChhhccCCCCCCEEECCCCcccccccccccccccEEECcC
Confidence            66 3344455444556666666666653331      1111224555666666666666666555433556666666654


Q ss_pred             cCc----ccccccCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEeCccce
Q 037732          267 GGV----WGWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLT  342 (350)
Q Consensus       267 ~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~  342 (350)
                      +.+    +..+..+++|+.|++++|....++...+..+++|+.|+|++|.++.+  .+..+  ..+++|+.|++++|++.
T Consensus       228 N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~--~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          228 NHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSL--PHDLF--TPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             SCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCC--CTTSS--TTCTTCCEEECCSSCEE
T ss_pred             CcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCcc--ChHHh--ccccCCCEEEccCCCcC
Confidence            443    23566788899999988877766544344568999999999999873  23344  67899999999999987


Q ss_pred             ec
Q 037732          343 LN  344 (350)
Q Consensus       343 ~~  344 (350)
                      +.
T Consensus       304 Cd  305 (452)
T 3zyi_A          304 CD  305 (452)
T ss_dssp             CS
T ss_pred             CC
Confidence            74

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.91  E-value=2.1e-24  Score=212.50  Aligned_cols=243  Identities=16%  Similarity=0.167  Sum_probs=167.0

Q ss_pred             ccc-cC--CCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCc-CcC--CCccccCcc-------cccEEEecC
Q 037732           77 LLE-VV--ECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMN-LLS--LPSSLGLLS-------NLQNLSLYN  143 (350)
Q Consensus        77 ~~~-~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~--lp~~l~~l~-------~L~~L~l~~  143 (350)
                      +|. +.  ++++|+.|++  +.+...+.+|.. +.++++|+.|++++|. ++.  +|..++.++       +|++|++++
T Consensus       481 iP~~l~f~~L~~L~~L~L--s~N~l~~~iP~~-l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~  557 (876)
T 4ecn_A          481 ENEELSWSNLKDLTDVEL--YNCPNMTQLPDF-LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGY  557 (876)
T ss_dssp             TTSCCCGGGCTTCCEEEE--ESCTTCCSCCGG-GGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCS
T ss_pred             CChhhhhccCCCCCEEEC--cCCCCCccChHH-HhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeC
Confidence            664 33  7899999999  677778888866 4589999999999997 774  777666665       999999999


Q ss_pred             CCCCC-ch--hhhccCCCcEEEecCCCCccccccccCCCCccEEeccCCCCCCccCcchhCCCCC-CcEEEcCCCCCCcc
Q 037732          144 CKLLD-IT--VIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSH-LEELYMGPRSFDKW  219 (350)
Q Consensus       144 ~~l~~-~~--~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~  219 (350)
                      |.+.. |.  .++++++|++|++++|.+..+| .++.+++|+.|++++|. +..+|.. +.++++ |++|++++|.+..+
T Consensus       558 N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~-l~~lp~~-l~~l~~~L~~L~Ls~N~L~~l  634 (876)
T 4ecn_A          558 NNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQ-IEEIPED-FCAFTDQVEGLGFSHNKLKYI  634 (876)
T ss_dssp             SCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSC-CSCCCTT-SCEECTTCCEEECCSSCCCSC
T ss_pred             CcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCc-cccchHH-HhhccccCCEEECcCCCCCcC
Confidence            99888 66  7899999999999999888888 88899999999999854 4478877 788888 99999998887433


Q ss_pred             hhhhccccccchhhc-------------------------------CCCceeEEEecCCCCCCccc--ccCCccEEEEEE
Q 037732          220 EVEVEGVKNASLHEL-------------------------------KHLISLELQIQDVNTFPRGL--FLEKLETFKILI  266 (350)
Q Consensus       220 ~~~~~~~~~~~l~~l-------------------------------~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~  266 (350)
                              |..+..+                               ++|+.|++++|.+..+|..+  .+++|+.|++..
T Consensus       635 --------p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~  706 (876)
T 4ecn_A          635 --------PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSN  706 (876)
T ss_dssp             --------CSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCS
T ss_pred             --------chhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCC
Confidence                    2233222                               24555555555555555544  345566666644


Q ss_pred             cCccc---c-cc-------cCccceEEEEeCCCcccchHHHH-HHhcccceeeeccccccchhhhhhhhcccCcCcceEE
Q 037732          267 GGVWG---W-EY-------ADIWCREFKIDLDSKIRLKDGLI-LKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHL  334 (350)
Q Consensus       267 ~~~~~---~-~~-------~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L  334 (350)
                      +.+..   . +.       .+++|+.|++++|....+|..+. ..+++|+.|+|++|.+++   +|..+  ..+++|+.|
T Consensus       707 N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~---lp~~l--~~L~~L~~L  781 (876)
T 4ecn_A          707 NLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS---FPTQP--LNSSQLKAF  781 (876)
T ss_dssp             CCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSS---CCCGG--GGCTTCCEE
T ss_pred             CcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCc---cchhh--hcCCCCCEE
Confidence            43221   1 11       12256666666665555555543 234666666666666665   45455  456666666


Q ss_pred             EEeC
Q 037732          335 YIRG  338 (350)
Q Consensus       335 ~l~~  338 (350)
                      +|++
T Consensus       782 ~Ls~  785 (876)
T 4ecn_A          782 GIRH  785 (876)
T ss_dssp             ECCC
T ss_pred             ECCC
Confidence            6654

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.91  E-value=3.1e-23  Score=192.94  Aligned_cols=260  Identities=18%  Similarity=0.219  Sum_probs=136.7

Q ss_pred             eeecccccccccccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCCC
Q 037732           67 FSATEEQTNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKL  146 (350)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l  146 (350)
                      +...+..+..++.+..+++|++|++  +.+ ....++.  +..+++|++|++++|.+..++. +..+++|++|++++|.+
T Consensus        51 L~l~~~~i~~l~~~~~l~~L~~L~L--s~n-~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l  124 (466)
T 1o6v_A           51 LQADRLGIKSIDGVEYLNNLTQINF--SNN-QLTDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQI  124 (466)
T ss_dssp             EECCSSCCCCCTTGGGCTTCCEEEC--CSS-CCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred             EecCCCCCccCcchhhhcCCCEEEC--CCC-ccCCchh--hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCCC
Confidence            3344555666666667778888887  333 3444444  4577777777777777776665 77777777777777777


Q ss_pred             CCchhhhccCCCcEEEecCCCCccccc--------------------cccCCCCccEEeccCCCCCCccCcchhCCCCCC
Q 037732          147 LDITVIRDLKKLAVLCLRGSDIKRLPV--------------------EVGELTLLRLLDLRDCMELEVIPPNILSNLSHL  206 (350)
Q Consensus       147 ~~~~~l~~l~~L~~L~l~~~~~~~lp~--------------------~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L  206 (350)
                      ...+.+..+++|++|++++|.+..++.                    .+.++++|+.|++++|. +..++.  +..+++|
T Consensus       125 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L  201 (466)
T 1o6v_A          125 TDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK-VSDISV--LAKLTNL  201 (466)
T ss_dssp             CCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSC-CCCCGG--GGGCTTC
T ss_pred             CCChHHcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCc-CCCChh--hccCCCC
Confidence            774447777777777777776665542                    13334444444444422 222222  3444445


Q ss_pred             cEEEcCCCCCCcchhhhcc---------------ccccchhhcCCCceeEEEecCCCCCCcccccCCccEEEEEEcCccc
Q 037732          207 EELYMGPRSFDKWEVEVEG---------------VKNASLHELKHLISLELQIQDVNTFPRGLFLEKLETFKILIGGVWG  271 (350)
Q Consensus       207 ~~L~l~~~~~~~~~~~~~~---------------~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~  271 (350)
                      ++|++++|.+.....  .+               .....+..+++|+.|++++|.+..++....+++|++|++..+.+..
T Consensus       202 ~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~  279 (466)
T 1o6v_A          202 ESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISN  279 (466)
T ss_dssp             SEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCC
T ss_pred             CEEEecCCccccccc--ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCc
Confidence            555554444422111  00               0001233344444444444444433331134444444444333211


Q ss_pred             --ccccCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEeCccceecc
Q 037732          272 --WEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLTLNP  345 (350)
Q Consensus       272 --~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~p  345 (350)
                        .+..+++|+.|++++|....++.  ...+++|+.|++++|.+++.   +. +  ..+++|+.|++++|+++.+|
T Consensus       280 ~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~---~~-~--~~l~~L~~L~l~~n~l~~~~  347 (466)
T 1o6v_A          280 ISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDI---SP-V--SSLTKLQRLFFYNNKVSDVS  347 (466)
T ss_dssp             CGGGTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCC---GG-G--GGCTTCCEEECCSSCCCCCG
T ss_pred             cccccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCc---hh-h--ccCccCCEeECCCCccCCch
Confidence              13445555555555554444432  22345666666666666553   11 3  45666666666666666553

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.91  E-value=1.1e-23  Score=202.48  Aligned_cols=275  Identities=15%  Similarity=0.135  Sum_probs=167.9

Q ss_pred             eeeeccccccccc--ccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcC-CCccccCcccccEEEec
Q 037732           66 VFSATEEQTNLLL--EVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLS-LPSSLGLLSNLQNLSLY  142 (350)
Q Consensus        66 ~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~l~~l~~L~~L~l~  142 (350)
                      .+.++.+.+..++  .+.++++|++|++  +.+......|.. |.++++|++|++++|.+.. .|..|+.+++|++|+++
T Consensus        37 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~L--s~n~i~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  113 (606)
T 3t6q_A           37 CLEFSFNVLPTIQNTTFSRLINLTFLDL--TRCQIYWIHEDT-FQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI  113 (606)
T ss_dssp             EEECTTCCCSEECTTTSTTCTTCSEEEC--TTCCCCEECTTT-TTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred             EEEccCCccCcCChhHhccCccceEEEC--CCCccceeChhh-ccCccccCeeeCCCCcccccChhhhcccccccEeecc
Confidence            3444555555553  3557777777777  444433333333 4577777777777777765 45667777777777777


Q ss_pred             CCCCCC--chhhhccCCCcEEEecCCCCcccc-ccccCCCCccEEeccCCCCCCccCcchhCCCCCCc--EEEcCCCCCC
Q 037732          143 NCKLLD--ITVIRDLKKLAVLCLRGSDIKRLP-VEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLE--ELYMGPRSFD  217 (350)
Q Consensus       143 ~~~l~~--~~~l~~l~~L~~L~l~~~~~~~lp-~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~--~L~l~~~~~~  217 (350)
                      +|.+..  +..++.+++|++|++++|.+..++ ..+..+++|++|++++| .+..+++..++.+++|+  +|++++|.+.
T Consensus       114 ~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~l~L~l~~n~l~  192 (606)
T 3t6q_A          114 QTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN-AIHYLSKEDMSSLQQATNLSLNLNGNDIA  192 (606)
T ss_dssp             TSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSS-CCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred             ccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccC-cccccChhhhhhhcccceeEEecCCCccC
Confidence            777776  466777777777777777777542 23444777777777773 34444433366677776  6666666554


Q ss_pred             cchhhh--------------------------------------------------------------------cccccc
Q 037732          218 KWEVEV--------------------------------------------------------------------EGVKNA  229 (350)
Q Consensus       218 ~~~~~~--------------------------------------------------------------------~~~~~~  229 (350)
                      ..+...                                                                    .+..+.
T Consensus       193 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~  272 (606)
T 3t6q_A          193 GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN  272 (606)
T ss_dssp             EECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTT
T ss_pred             ccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHH
Confidence            332100                                                                    001123


Q ss_pred             chhhcCCCceeEEEecCCCCCCccc-ccCCccEEEEEEcCcc----cccccCccceEEEEeCCCcc-cchHHHHHHhccc
Q 037732          230 SLHELKHLISLELQIQDVNTFPRGL-FLEKLETFKILIGGVW----GWEYADIWCREFKIDLDSKI-RLKDGLILKLEGI  303 (350)
Q Consensus       230 ~l~~l~~L~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~----~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L  303 (350)
                      .++.+++|+.|++++|.+..+|..+ .+++|++|++..+.+.    ..+..+++|+.|+++++... .++......+++|
T Consensus       273 ~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L  352 (606)
T 3t6q_A          273 TFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL  352 (606)
T ss_dssp             TTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTC
T ss_pred             HhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcC
Confidence            3667788888888888888888877 6788888888655432    24556677777777765433 3333322235666


Q ss_pred             ceeeeccccccchhhhhhhhcccCcCcceEEEEeCccceeccC
Q 037732          304 EDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLTLNPA  346 (350)
Q Consensus       304 ~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~p~  346 (350)
                      +.|++++|.+++....+..+  ..+++|+.|++++|+++..++
T Consensus       353 ~~L~l~~n~l~~~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~  393 (606)
T 3t6q_A          353 RELDLSHDDIETSDCCNLQL--RNLSHLQSLNLSYNEPLSLKT  393 (606)
T ss_dssp             CEEECCSSCCCEEEESTTTT--TTCTTCCEEECCSCSCEEECT
T ss_pred             CEEECCCCccccccCcchhc--ccCCCCCEEECCCCcCCcCCH
Confidence            66666666665531113334  455666666666666555443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=2.7e-23  Score=199.15  Aligned_cols=264  Identities=16%  Similarity=0.149  Sum_probs=190.3

Q ss_pred             eeeecccccccccc--cCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCc-cccCcccccEEEec
Q 037732           66 VFSATEEQTNLLLE--VVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPS-SLGLLSNLQNLSLY  142 (350)
Q Consensus        66 ~~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~  142 (350)
                      .+.+.+..+..+|.  +..+++|++|++  +.+. ...++...+..+++|++|++++|.+..+|. .|+.+++|++|+++
T Consensus        55 ~l~l~~~~l~~lp~~~~~~l~~L~~L~L--~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  131 (597)
T 3oja_B           55 IVTFKNSTMRKLPAALLDSFRQVELLNL--NDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE  131 (597)
T ss_dssp             EEEESSCEESEECTHHHHHCCCCSEEEC--TTSC-CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             EEEeeCCCCCCcCHHHHccCCCCcEEEC--CCCC-CCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEee
Confidence            34455556666664  346788899988  4444 445554445688889999999888887554 56888899999999


Q ss_pred             CCCCCC-chh-hhccCCCcEEEecCCCCccccc-cccCCCCccEEeccCCCCCCccCcchhCCCCCCcEE----------
Q 037732          143 NCKLLD-ITV-IRDLKKLAVLCLRGSDIKRLPV-EVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEEL----------  209 (350)
Q Consensus       143 ~~~l~~-~~~-l~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L----------  209 (350)
                      +|.+.. ++. ++.+++|++|++++|.+..++. .+..+++|++|++++|. +..++.   +.+++|+.|          
T Consensus       132 ~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~---~~l~~L~~L~l~~n~l~~l  207 (597)
T 3oja_B          132 RNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVDL---SLIPSLFHANVSYNLLSTL  207 (597)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC-CSBCCG---GGCTTCSEEECCSSCCSEE
T ss_pred             CCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC-CCCcCh---hhhhhhhhhhcccCccccc
Confidence            988888 443 5888899999998888886654 57888889999888843 333332   223333333          


Q ss_pred             ---------EcCCCCCCcchhhhc---------c---ccccchhhcCCCceeEEEecCCCCC-Cccc-ccCCccEEEEEE
Q 037732          210 ---------YMGPRSFDKWEVEVE---------G---VKNASLHELKHLISLELQIQDVNTF-PRGL-FLEKLETFKILI  266 (350)
Q Consensus       210 ---------~l~~~~~~~~~~~~~---------~---~~~~~l~~l~~L~~L~l~~~~~~~l-~~~~-~~~~L~~L~l~~  266 (350)
                               ++++|.+...+....         +   ..+..+..+++|+.|++++|.+..+ |..+ .+++|+.|++..
T Consensus       208 ~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~  287 (597)
T 3oja_B          208 AIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN  287 (597)
T ss_dssp             ECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTT
T ss_pred             cCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCC
Confidence                     333333221111000         0   1235688999999999999999866 4555 789999999976


Q ss_pred             cCc---ccccccCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEeCcccee
Q 037732          267 GGV---WGWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLTL  343 (350)
Q Consensus       267 ~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~  343 (350)
                      +.+   +.....+++|+.|++++|....+|.++.. +++|+.|+|++|.++.+   +  +  ..+++|+.|++++|++++
T Consensus       288 N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~-l~~L~~L~L~~N~l~~~---~--~--~~~~~L~~L~l~~N~~~~  359 (597)
T 3oja_B          288 NRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQ-FDRLENLYLDHNSIVTL---K--L--STHHTLKNLTLSHNDWDC  359 (597)
T ss_dssp             SCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHH-HTTCSEEECCSSCCCCC---C--C--CTTCCCSEEECCSSCEEH
T ss_pred             CCCCCCCcccccCCCCcEEECCCCCCCccCccccc-CCCCCEEECCCCCCCCc---C--h--hhcCCCCEEEeeCCCCCC
Confidence            654   33456789999999999999899988765 69999999999999883   3  4  678999999999999986


Q ss_pred             c
Q 037732          344 N  344 (350)
Q Consensus       344 ~  344 (350)
                      .
T Consensus       360 ~  360 (597)
T 3oja_B          360 N  360 (597)
T ss_dssp             H
T ss_pred             h
Confidence            3

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.91  E-value=4.1e-24  Score=198.28  Aligned_cols=273  Identities=15%  Similarity=0.129  Sum_probs=195.6

Q ss_pred             eeecccccccccccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCc-CC-CccccCcccccEEEecCC
Q 037732           67 FSATEEQTNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLL-SL-PSSLGLLSNLQNLSLYNC  144 (350)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~l-p~~l~~l~~L~~L~l~~~  144 (350)
                      +......+..+|.+  .+++++|++  +.+.. ..++...+.++++|++|++++|.+. .+ +..|..+++|++|++++|
T Consensus        15 ~~c~~~~l~~lp~l--~~~l~~L~L--s~n~i-~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n   89 (455)
T 3v47_A           15 AICINRGLHQVPEL--PAHVNYVDL--SLNSI-AELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN   89 (455)
T ss_dssp             EECCSSCCSSCCCC--CTTCCEEEC--CSSCC-CEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred             cCcCCCCcccCCCC--CCccCEEEe--cCCcc-CcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence            33445577788873  379999999  55554 4443333568999999999999886 34 567899999999999999


Q ss_pred             CCCC--chhhhccCCCcEEEecCCCCcc-cccc--ccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcc
Q 037732          145 KLLD--ITVIRDLKKLAVLCLRGSDIKR-LPVE--VGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKW  219 (350)
Q Consensus       145 ~l~~--~~~l~~l~~L~~L~l~~~~~~~-lp~~--l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  219 (350)
                      .+..  +..++.+++|++|++++|.+.. +|..  +..+++|++|++++|......|...+.++++|++|++++|.+...
T Consensus        90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~  169 (455)
T 3v47_A           90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI  169 (455)
T ss_dssp             TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred             ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc
Confidence            9987  6789999999999999999884 4444  889999999999996655554655478999999999999987543


Q ss_pred             hhhhcccc---------------------------ccchhhcC-------------------------------------
Q 037732          220 EVEVEGVK---------------------------NASLHELK-------------------------------------  235 (350)
Q Consensus       220 ~~~~~~~~---------------------------~~~l~~l~-------------------------------------  235 (350)
                      .......+                           ...+..++                                     
T Consensus       170 ~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~  249 (455)
T 3v47_A          170 CEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNS  249 (455)
T ss_dssp             CTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTC
T ss_pred             ChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccc
Confidence            22100000                           00011123                                     


Q ss_pred             --------------------------CCceeEEEecCCCCC-Cccc-ccCCccEEEEEEcCc----ccccccCccceEEE
Q 037732          236 --------------------------HLISLELQIQDVNTF-PRGL-FLEKLETFKILIGGV----WGWEYADIWCREFK  283 (350)
Q Consensus       236 --------------------------~L~~L~l~~~~~~~l-~~~~-~~~~L~~L~l~~~~~----~~~~~~~~~L~~L~  283 (350)
                                                +|+.|++++|.+..+ |..+ .+++|++|++..+.+    +..+..+++|+.|+
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  329 (455)
T 3v47_A          250 YNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLN  329 (455)
T ss_dssp             TTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             cccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEE
Confidence                                      344444444444433 3333 567788888765543    23566788888898


Q ss_pred             EeCCCcccchHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEeCccceeccCCC
Q 037732          284 IDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLTLNPAES  348 (350)
Q Consensus       284 l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~p~~~  348 (350)
                      +++|....++......+++|+.|+|++|.+++.  .+..+  ..+++|++|++++|+++.+|+..
T Consensus       330 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~--~~~~~--~~l~~L~~L~L~~N~l~~~~~~~  390 (455)
T 3v47_A          330 LSQNFLGSIDSRMFENLDKLEVLDLSYNHIRAL--GDQSF--LGLPNLKELALDTNQLKSVPDGI  390 (455)
T ss_dssp             CCSSCCCEECGGGGTTCTTCCEEECCSSCCCEE--CTTTT--TTCTTCCEEECCSSCCSCCCTTT
T ss_pred             CCCCccCCcChhHhcCcccCCEEECCCCccccc--Chhhc--cccccccEEECCCCccccCCHhH
Confidence            888877766443334468899999999988874  45666  77899999999999999888753

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.91  E-value=5.7e-24  Score=205.08  Aligned_cols=262  Identities=14%  Similarity=0.118  Sum_probs=177.8

Q ss_pred             ccc-ccCCCCCccEEEecccCCc-ccc-ccChHHHhcC------CcceEEeecCCcCcCCCc--cccCcccccEEEecCC
Q 037732           76 LLL-EVVECPQLELLFICADKES-SSL-TIPNKFFERM------IQVRVINFSYMNLLSLPS--SLGLLSNLQNLSLYNC  144 (350)
Q Consensus        76 ~~~-~~~~~~~L~~L~l~~~~~~-~~~-~~~~~~~~~l------~~L~~L~l~~~~~~~lp~--~l~~l~~L~~L~l~~~  144 (350)
                      .+| .+.++++|++|++  +.+. ..+ .+|..+. .+      ++|++|++++|.++.+|.  .++.+++|++|++++|
T Consensus       264 ~~p~~l~~l~~L~~L~L--s~n~~l~~~~lp~~~~-~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N  340 (636)
T 4eco_A          264 KLPTFLKALPEMQLINV--ACNRGISGEQLKDDWQ-ALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYN  340 (636)
T ss_dssp             SCCTTTTTCSSCCEEEC--TTCTTSCHHHHHHHHH-HHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSC
T ss_pred             cChHHHhcCCCCCEEEC--cCCCCCccccchHHHH-hhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCC
Confidence            445 4668899999999  6665 555 6777654 44      899999999999888888  8999999999999999


Q ss_pred             CCCC-chhhhccCCCcEEEecCCCCccccccccCCCC-ccEEeccCCCCCCccCcchhCCCC--CCcEEEcCCCCCCcch
Q 037732          145 KLLD-ITVIRDLKKLAVLCLRGSDIKRLPVEVGELTL-LRLLDLRDCMELEVIPPNILSNLS--HLEELYMGPRSFDKWE  220 (350)
Q Consensus       145 ~l~~-~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~-L~~L~l~~~~~~~~~~~~~l~~l~--~L~~L~l~~~~~~~~~  220 (350)
                      .+.+ ++.++.+++|++|++++|.+..+|..+..+++ |++|++++|. +..+|.. +..++  +|++|++++|.+....
T Consensus       341 ~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~-l~~lp~~-~~~~~l~~L~~L~Ls~N~l~~~~  418 (636)
T 4eco_A          341 QLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNK-LKYIPNI-FDAKSVSVMSAIDFSYNEIGSVD  418 (636)
T ss_dssp             CCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSC-CSSCCSC-CCTTCSSCEEEEECCSSCTTTTT
T ss_pred             cCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCc-Ccccchh-hhhcccCccCEEECcCCcCCCcc
Confidence            8884 33788888888888888888888888888888 8888888844 4466654 44443  6777777766663211


Q ss_pred             hh-h----------------------ccccccc-hhhcCCCceeEEEecCCCCCCccc-c-cC-------CccEEEEEEc
Q 037732          221 VE-V----------------------EGVKNAS-LHELKHLISLELQIQDVNTFPRGL-F-LE-------KLETFKILIG  267 (350)
Q Consensus       221 ~~-~----------------------~~~~~~~-l~~l~~L~~L~l~~~~~~~l~~~~-~-~~-------~L~~L~l~~~  267 (350)
                      +. +                      ...+|.. +..+++|+.|++++|.+..+|... . ..       +|++|++..+
T Consensus       419 p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N  498 (636)
T 4eco_A          419 GKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN  498 (636)
T ss_dssp             TCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSS
T ss_pred             hhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCC
Confidence            00 0                      0022222 233566666666666666666554 1 11       6666766544


Q ss_pred             Cc---ccccc--cCccceEEEEeCCCcccchHHHHHHhcccceeeec------cccccchhhhhhhhcccCcCcceEEEE
Q 037732          268 GV---WGWEY--ADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLS------YLEEQDVNYFVNELVKVGPSQLKHLYI  336 (350)
Q Consensus       268 ~~---~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~------~n~l~~~~~~~~~l~~~~~~~L~~L~l  336 (350)
                      .+   +..+.  .+++|+.|++++|....+|..+.. +++|+.|+|+      +|.+.+.  +|..+  ..+++|+.|++
T Consensus       499 ~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~-l~~L~~L~Ls~N~~ls~N~l~~~--~p~~l--~~l~~L~~L~L  573 (636)
T 4eco_A          499 KLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLN-SSTLKGFGIRNQRDAQGNRTLRE--WPEGI--TLCPSLTQLQI  573 (636)
T ss_dssp             CCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGG-CSSCCEEECCSCBCTTCCBCCCC--CCTTG--GGCSSCCEEEC
T ss_pred             cCCccChhhhhccCCCcCEEECCCCCCCCcChhhhc-CCCCCEEECCCCcccccCccccc--ChHHH--hcCCCCCEEEC
Confidence            43   22333  667777777777766666666554 5777777773      4455542  66666  66888888888


Q ss_pred             eCccceeccCC
Q 037732          337 RGSHLTLNPAE  347 (350)
Q Consensus       337 ~~~~~~~~p~~  347 (350)
                      ++|+++.+|..
T Consensus       574 s~N~l~~ip~~  584 (636)
T 4eco_A          574 GSNDIRKVNEK  584 (636)
T ss_dssp             CSSCCCBCCSC
T ss_pred             CCCcCCccCHh
Confidence            88888877764

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.91  E-value=1.4e-23  Score=201.75  Aligned_cols=259  Identities=14%  Similarity=0.074  Sum_probs=152.9

Q ss_pred             ccccccccc--cCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCC-CccccCcccccEEEecCCCCC
Q 037732           71 EEQTNLLLE--VVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSL-PSSLGLLSNLQNLSLYNCKLL  147 (350)
Q Consensus        71 ~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~~~l~  147 (350)
                      ...+..++.  +..+++|++|++  +.+ ....+|..+ ..+++|++|++++|.+..+ |..+..+++|++|++++|.+.
T Consensus       263 ~n~l~~~~~~~~~~l~~L~~L~l--~~n-~l~~lp~~l-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~  338 (606)
T 3t6q_A          263 KHYFFNISSNTFHCFSGLQELDL--TAT-HLSELPSGL-VGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKR  338 (606)
T ss_dssp             TCCCSSCCTTTTTTCTTCSEEEC--TTS-CCSCCCSSC-CSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSC
T ss_pred             cCccCccCHHHhccccCCCEEec--cCC-ccCCCChhh-cccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcc
Confidence            334444442  445667777777  333 344555543 4566777777777766653 445666677777777776655


Q ss_pred             C---chhhhccCCCcEEEecCCCCccc---cccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchh
Q 037732          148 D---ITVIRDLKKLAVLCLRGSDIKRL---PVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEV  221 (350)
Q Consensus       148 ~---~~~l~~l~~L~~L~l~~~~~~~l---p~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  221 (350)
                      .   ...+..+++|++|++++|.+..+   +..+..+++|++|++++|......+.. +..+++|++|++++|.+     
T Consensus       339 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l-----  412 (606)
T 3t6q_A          339 LELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEA-FKECPQLELLDLAFTRL-----  412 (606)
T ss_dssp             CBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTT-TTTCTTCSEEECTTCCE-----
T ss_pred             cccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHH-hcCCccCCeEECCCCcC-----
Confidence            3   23466667777777777666644   445666777777777664333322333 56667777777776665     


Q ss_pred             hhccccc-cchhhcCCCceeEEEecCCCCCCc-cc-ccCCccEEEEEEcCcc-------cccccCccceEEEEeCCCccc
Q 037732          222 EVEGVKN-ASLHELKHLISLELQIQDVNTFPR-GL-FLEKLETFKILIGGVW-------GWEYADIWCREFKIDLDSKIR  291 (350)
Q Consensus       222 ~~~~~~~-~~l~~l~~L~~L~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~-------~~~~~~~~L~~L~l~~~~~~~  291 (350)
                        .+..+ ..+..+++|+.|++++|.+...+. .+ .+++|++|++..+.+.       ..+..+++|+.|++++|....
T Consensus       413 --~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~  490 (606)
T 3t6q_A          413 --KVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS  490 (606)
T ss_dssp             --ECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCE
T ss_pred             --CCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCc
Confidence              22222 236667777777777776654433 33 4667777777544321       235566777777777766555


Q ss_pred             chHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEeCccceeccC
Q 037732          292 LKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLTLNPA  346 (350)
Q Consensus       292 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~p~  346 (350)
                      .+......+++|+.|+|++|.+++.  .+..+  ..+++| .|++++|+++.+|+
T Consensus       491 ~~~~~~~~l~~L~~L~Ls~N~l~~~--~~~~l--~~l~~L-~L~L~~N~l~~~~~  540 (606)
T 3t6q_A          491 IDQHAFTSLKMMNHVDLSHNRLTSS--SIEAL--SHLKGI-YLNLASNHISIILP  540 (606)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCCGG--GGGGG--TTCCSC-EEECCSSCCCCCCG
T ss_pred             cChhhhccccCCCEEECCCCccCcC--ChhHh--Cccccc-EEECcCCcccccCH
Confidence            4322222357777777777777663  44555  556666 66666666666554

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.90  E-value=2.4e-23  Score=196.39  Aligned_cols=141  Identities=15%  Similarity=0.138  Sum_probs=100.5

Q ss_pred             eeeecccccccccccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCC-CccccCcccccEEEecCC
Q 037732           66 VFSATEEQTNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSL-PSSLGLLSNLQNLSLYNC  144 (350)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~~  144 (350)
                      .+..++..+..+|.... +++++|++  +.+. ...++...+..+++|++|++++|.+..+ |..|..+++|++|++++|
T Consensus         4 ~l~ls~n~l~~ip~~~~-~~L~~L~L--s~n~-i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N   79 (520)
T 2z7x_B            4 LVDRSKNGLIHVPKDLS-QKTTILNI--SQNY-ISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN   79 (520)
T ss_dssp             EEECTTSCCSSCCCSCC-TTCSEEEC--CSSC-CCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred             eEecCCCCccccccccc-ccccEEEC--CCCc-ccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence            34556667777775333 78888888  4444 4555554567888899999998888864 677888889999999988


Q ss_pred             CCCC-chhhhccCCCcEEEecCCCCcc--ccccccCCCCccEEeccCCCCCCccCcchhCCCCCC--cEEEcCCCCC
Q 037732          145 KLLD-ITVIRDLKKLAVLCLRGSDIKR--LPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHL--EELYMGPRSF  216 (350)
Q Consensus       145 ~l~~-~~~l~~l~~L~~L~l~~~~~~~--lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L--~~L~l~~~~~  216 (350)
                      .++. +..  .+++|++|++++|.+..  +|..++++++|++|++++|....   .. +..+++|  ++|++++|.+
T Consensus        80 ~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~-~~~l~~L~L~~L~l~~n~l  150 (520)
T 2z7x_B           80 KLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SS-VLPIAHLNISKVLLVLGET  150 (520)
T ss_dssp             CCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GG-GGGGTTSCEEEEEEEECTT
T ss_pred             ceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hh-ccccccceeeEEEeecccc
Confidence            8887 443  78888899998888875  56788888888888888854322   11 4445555  6666666554

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.90  E-value=2.6e-23  Score=197.94  Aligned_cols=97  Identities=15%  Similarity=0.182  Sum_probs=54.5

Q ss_pred             eeeccccccccc--ccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCC
Q 037732           67 FSATEEQTNLLL--EVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNC  144 (350)
Q Consensus        67 ~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~  144 (350)
                      +.++.+.+..++  .+..+++|++|++  +.+. ...++...|..+++|++|++++|.++.+|..  .+++|++|++++|
T Consensus        57 L~Ls~N~i~~~~~~~~~~l~~L~~L~L--s~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N  131 (562)
T 3a79_B           57 LSLSQNSISELRMPDISFLSELRVLRL--SHNR-IRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFN  131 (562)
T ss_dssp             EECCSSCCCCCCGGGTTTCTTCCEEEC--CSCC-CCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECCSS
T ss_pred             EECCCCCccccChhhhccCCCccEEEC--CCCC-CCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECCCC
Confidence            444445555554  3456666666666  3333 3333323344566666666666666655554  5666666666666


Q ss_pred             CCCC---chhhhccCCCcEEEecCCCC
Q 037732          145 KLLD---ITVIRDLKKLAVLCLRGSDI  168 (350)
Q Consensus       145 ~l~~---~~~l~~l~~L~~L~l~~~~~  168 (350)
                      .+..   +..++++++|++|++++|.+
T Consensus       132 ~l~~l~~p~~~~~l~~L~~L~L~~n~l  158 (562)
T 3a79_B          132 DFDVLPVCKEFGNLTKLTFLGLSAAKF  158 (562)
T ss_dssp             CCSBCCCCGGGGGCTTCCEEEEECSBC
T ss_pred             CccccCchHhhcccCcccEEecCCCcc
Confidence            6554   24566666666666666544

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.90  E-value=2.9e-23  Score=195.88  Aligned_cols=108  Identities=10%  Similarity=0.125  Sum_probs=58.1

Q ss_pred             chhhcCCCceeEEEecCCCC-CCccc--ccCCccEEEEEEcCcccc-cccC-ccceEEEEeCCCcccchHHHHHHhcccc
Q 037732          230 SLHELKHLISLELQIQDVNT-FPRGL--FLEKLETFKILIGGVWGW-EYAD-IWCREFKIDLDSKIRLKDGLILKLEGIE  304 (350)
Q Consensus       230 ~l~~l~~L~~L~l~~~~~~~-l~~~~--~~~~L~~L~l~~~~~~~~-~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~  304 (350)
                      .++.+++|+.|++++|.+.. +|...  .+++|++|++..+.+... .... ++|+.|++++|....+|.++. .+++|+
T Consensus       369 ~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~~~-~l~~L~  447 (520)
T 2z7x_B          369 MTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVV-KLEALQ  447 (520)
T ss_dssp             HHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCGGGG-GCTTCC
T ss_pred             HHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCcccccchhhh-cCCCCC
Confidence            34445555555555555544 44332  345555555544443221 1111 466666666666666665555 356666


Q ss_pred             eeeeccccccchhhhhhh-hcccCcCcceEEEEeCcccee
Q 037732          305 DLWLSYLEEQDVNYFVNE-LVKVGPSQLKHLYIRGSHLTL  343 (350)
Q Consensus       305 ~L~L~~n~l~~~~~~~~~-l~~~~~~~L~~L~l~~~~~~~  343 (350)
                      .|++++|.++.   +|.. +  ..+++|+.|++++|++++
T Consensus       448 ~L~L~~N~l~~---l~~~~~--~~l~~L~~L~l~~N~~~c  482 (520)
T 2z7x_B          448 ELNVASNQLKS---VPDGIF--DRLTSLQKIWLHTNPWDC  482 (520)
T ss_dssp             EEECCSSCCCC---CCTTTT--TTCTTCCEEECCSSCBCC
T ss_pred             EEECCCCcCCc---cCHHHh--ccCCcccEEECcCCCCcc
Confidence            66666666665   4433 4  456666666666666655

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.90  E-value=1e-23  Score=202.67  Aligned_cols=258  Identities=13%  Similarity=0.022  Sum_probs=193.5

Q ss_pred             eecccccccccccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCC
Q 037732           68 SATEEQTNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLL  147 (350)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~  147 (350)
                      .+.+..+..++.+..+++|++|++  +.+.. ..+|.  + .+++|+.|++++|..... ..+..+++|++|++++|.++
T Consensus       291 ~l~~~~~~~l~~l~~~~~L~~L~l--~~n~l-~~lp~--~-~l~~L~~L~l~~n~~~~~-~~~~~l~~L~~L~ls~n~l~  363 (606)
T 3vq2_A          291 SLAGVSIKYLEDVPKHFKWQSLSI--IRCQL-KQFPT--L-DLPFLKSLTLTMNKGSIS-FKKVALPSLSYLDLSRNALS  363 (606)
T ss_dssp             EEESCCCCCCCCCCTTCCCSEEEE--ESCCC-SSCCC--C-CCSSCCEEEEESCSSCEE-CCCCCCTTCCEEECCSSCEE
T ss_pred             EecCccchhhhhccccccCCEEEc--ccccC-ccccc--C-CCCccceeeccCCcCccc-hhhccCCCCCEEECcCCccC
Confidence            344455566666667777888888  44443 66663  3 678888888887743321 14567888888888888766


Q ss_pred             C----chhhhccCCCcEEEecCCCCccccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhh
Q 037732          148 D----ITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEV  223 (350)
Q Consensus       148 ~----~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~  223 (350)
                      .    +..+..+++|++|++++|.+..+|..+..+++|+.|++++|......+...+.++++|++|++++|.+       
T Consensus       364 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l-------  436 (606)
T 3vq2_A          364 FSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT-------  436 (606)
T ss_dssp             EEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCC-------
T ss_pred             CCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCC-------
Confidence            4    46778888899999988888888888888899999999886554444423378888999999998887       


Q ss_pred             ccccccchhhcCCCceeEEEecCCCC--CCccc-ccCCccEEEEEEcCc----ccccccCccceEEEEeCCCcccc-hHH
Q 037732          224 EGVKNASLHELKHLISLELQIQDVNT--FPRGL-FLEKLETFKILIGGV----WGWEYADIWCREFKIDLDSKIRL-KDG  295 (350)
Q Consensus       224 ~~~~~~~l~~l~~L~~L~l~~~~~~~--l~~~~-~~~~L~~L~l~~~~~----~~~~~~~~~L~~L~l~~~~~~~~-~~~  295 (350)
                      .+..+..++++++|+.|++++|.+..  +|..+ .+++|++|++..+.+    +..++.+++|+.|++++|..... |.+
T Consensus       437 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  516 (606)
T 3vq2_A          437 KIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSH  516 (606)
T ss_dssp             EECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGG
T ss_pred             CccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHH
Confidence            55667788889999999999998765  56666 678999999876654    33577889999999999877765 444


Q ss_pred             HHHHhcccceeeeccccccchhhhhhhhcccCcC-cceEEEEeCccceecc
Q 037732          296 LILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPS-QLKHLYIRGSHLTLNP  345 (350)
Q Consensus       296 ~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~-~L~~L~l~~~~~~~~p  345 (350)
                      +. .+++|+.|+|++|+++.   +|..+  ..++ +|+.|++++|++.+..
T Consensus       517 ~~-~l~~L~~L~l~~N~l~~---~p~~~--~~l~~~L~~l~l~~N~~~c~c  561 (606)
T 3vq2_A          517 YN-QLYSLSTLDCSFNRIET---SKGIL--QHFPKSLAFFNLTNNSVACIC  561 (606)
T ss_dssp             TT-TCTTCCEEECTTSCCCC---EESCG--GGSCTTCCEEECCSCCCCCSS
T ss_pred             cc-CCCcCCEEECCCCcCcc---cCHhH--hhhcccCcEEEccCCCcccCC
Confidence            44 46899999999999887   66666  6676 5999999999988743

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.90  E-value=1.3e-22  Score=195.01  Aligned_cols=119  Identities=23%  Similarity=0.228  Sum_probs=64.6

Q ss_pred             eeccccccccc--ccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCC-CccccCcccccEEEecCC
Q 037732           68 SATEEQTNLLL--EVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSL-PSSLGLLSNLQNLSLYNC  144 (350)
Q Consensus        68 ~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~~  144 (350)
                      .+..+.+..++  .+.++++|++|++  +.+. ...++...|.++++|++|++++|.+..+ |..|+++++|++|++++|
T Consensus        38 ~Ls~n~l~~~~~~~~~~l~~L~~L~L--s~n~-l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n  114 (606)
T 3vq2_A           38 DLSFNPLKILKSYSFSNFSELQWLDL--SRCE-IETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVET  114 (606)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEEC--TTCC-CCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTS
T ss_pred             ECCCCCcCEeChhhccCCccCcEEeC--CCCc-ccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCC
Confidence            33344444443  2445566666666  3332 2333322244566666666666665543 555666666666666666


Q ss_pred             CCCC--chhhhccCCCcEEEecCCCCc--cccccccCCCCccEEeccCC
Q 037732          145 KLLD--ITVIRDLKKLAVLCLRGSDIK--RLPVEVGELTLLRLLDLRDC  189 (350)
Q Consensus       145 ~l~~--~~~l~~l~~L~~L~l~~~~~~--~lp~~l~~l~~L~~L~l~~~  189 (350)
                      .+..  +..++++++|++|++++|.+.  .+|..++++++|++|++++|
T Consensus       115 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n  163 (606)
T 3vq2_A          115 KLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN  163 (606)
T ss_dssp             CCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSS
T ss_pred             ccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCC
Confidence            6555  245566666666666666555  35555666666666666653

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.90  E-value=5.1e-23  Score=184.63  Aligned_cols=251  Identities=17%  Similarity=0.171  Sum_probs=189.1

Q ss_pred             CCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCc-cccCcccccEEEecCCCCCC--chhhhccCCC
Q 037732           82 ECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPS-SLGLLSNLQNLSLYNCKLLD--ITVIRDLKKL  158 (350)
Q Consensus        82 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L  158 (350)
                      .|+.....++   .+.....+|..+   .+++++|++++|.++.+|. .+.++++|++|++++|.+..  +..+..+++|
T Consensus        29 ~C~~~~~c~~---~~~~l~~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  102 (353)
T 2z80_A           29 SCDRNGICKG---SSGSLNSIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSL  102 (353)
T ss_dssp             EECTTSEEEC---CSTTCSSCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             CCCCCeEeeC---CCCCcccccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCC
Confidence            3444445566   455567788754   3589999999999987665 78899999999999999888  4678999999


Q ss_pred             cEEEecCCCCcccccc-ccCCCCccEEeccCCCCCCccCc-chhCCCCCCcEEEcCCCC-CCcchhhhccccccchhhcC
Q 037732          159 AVLCLRGSDIKRLPVE-VGELTLLRLLDLRDCMELEVIPP-NILSNLSHLEELYMGPRS-FDKWEVEVEGVKNASLHELK  235 (350)
Q Consensus       159 ~~L~l~~~~~~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~l~~l~  235 (350)
                      ++|++++|.+..+|.. +..+++|++|++++| .+..+|. ..+.++++|++|++++|. +       ....+..+++++
T Consensus       103 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~-------~~~~~~~~~~l~  174 (353)
T 2z80_A          103 EHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTF-------TKIQRKDFAGLT  174 (353)
T ss_dssp             CEEECCSSCCSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSC-------CEECTTTTTTCC
T ss_pred             CEEECCCCcCCcCCHhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccc-------cccCHHHccCCC
Confidence            9999999999988876 788999999999984 4556666 447889999999999884 4       233456788899


Q ss_pred             CCceeEEEecCCCCC-Cccc-ccCCccEEEEEEcCccc----ccccCccceEEEEeCCCcccchHH---HHHHhccccee
Q 037732          236 HLISLELQIQDVNTF-PRGL-FLEKLETFKILIGGVWG----WEYADIWCREFKIDLDSKIRLKDG---LILKLEGIEDL  306 (350)
Q Consensus       236 ~L~~L~l~~~~~~~l-~~~~-~~~~L~~L~l~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~L~~L  306 (350)
                      +|+.|++++|.+..+ |..+ .+++|++|++..+.+..    ++..+++|+.|++++|.....+..   .....+.++.+
T Consensus       175 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l  254 (353)
T 2z80_A          175 FLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKF  254 (353)
T ss_dssp             EEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEE
T ss_pred             CCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhcc
Confidence            999999999998765 4555 67788888887766433    234578888888888765543311   12234567777


Q ss_pred             eeccccccc--hhhhhhhhcccCcCcceEEEEeCccceeccCCC
Q 037732          307 WLSYLEEQD--VNYFVNELVKVGPSQLKHLYIRGSHLTLNPAES  348 (350)
Q Consensus       307 ~L~~n~l~~--~~~~~~~l~~~~~~~L~~L~l~~~~~~~~p~~~  348 (350)
                      +++++.+.+  ...+|..+  ..+++|+.|++++|.++.+|+.+
T Consensus       255 ~L~~~~l~~~~l~~l~~~l--~~l~~L~~L~Ls~N~l~~i~~~~  296 (353)
T 2z80_A          255 TFRNVKITDESLFQVMKLL--NQISGLLELEFSRNQLKSVPDGI  296 (353)
T ss_dssp             EEESCBCCHHHHHHHHHHH--HTCTTCCEEECCSSCCCCCCTTT
T ss_pred             ccccccccCcchhhhHHHH--hcccCCCEEECCCCCCCccCHHH
Confidence            777777654  22356667  78999999999999999999864

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.90  E-value=1.5e-22  Score=188.30  Aligned_cols=110  Identities=15%  Similarity=0.093  Sum_probs=62.2

Q ss_pred             hhhcCCCceeEEEecCCCCCCcccccCCccEEEEEEcCccc--ccccCccceEEEEeCCCcccchHHHHHHhcccceeee
Q 037732          231 LHELKHLISLELQIQDVNTFPRGLFLEKLETFKILIGGVWG--WEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWL  308 (350)
Q Consensus       231 l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L  308 (350)
                      +..+++|+.|++++|.+..++....+++|+.|++..+.+..  .++.+++|+.|++++|.....+ .+. .+++|+.|++
T Consensus       283 ~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~-~l~~L~~L~l  360 (466)
T 1o6v_A          283 LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVS-SLA-NLTNINWLSA  360 (466)
T ss_dssp             GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCCG-GGT-TCTTCCEEEC
T ss_pred             ccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCccCCch-hhc-cCCCCCEEeC
Confidence            33444444444444444444331144555555554443322  1445666666666665555443 222 3577777777


Q ss_pred             ccccccchhhhhhhhcccCcCcceEEEEeCccceeccCCC
Q 037732          309 SYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLTLNPAES  348 (350)
Q Consensus       309 ~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~p~~~  348 (350)
                      ++|.++++  .|  +  ..+++|+.|++++|+++..|...
T Consensus       361 ~~n~l~~~--~~--~--~~l~~L~~L~l~~n~~~~~p~~~  394 (466)
T 1o6v_A          361 GHNQISDL--TP--L--ANLTRITQLGLNDQAWTNAPVNY  394 (466)
T ss_dssp             CSSCCCBC--GG--G--TTCTTCCEEECCCEEEECCCBCC
T ss_pred             CCCccCcc--ch--h--hcCCCCCEEeccCCcccCCchhh
Confidence            77777663  23  4  56788888888888888776543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.90  E-value=1.7e-23  Score=198.72  Aligned_cols=273  Identities=16%  Similarity=0.201  Sum_probs=166.9

Q ss_pred             eeeeccccccccc--ccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCcc-ccCcccccEEEec
Q 037732           66 VFSATEEQTNLLL--EVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSS-LGLLSNLQNLSLY  142 (350)
Q Consensus        66 ~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-l~~l~~L~~L~l~  142 (350)
                      .+.+..+.+..++  .+..+++|++|++  +.+. ...++...+..+++|++|++++|.+..++.. ++.+++|++|+++
T Consensus        30 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L--s~n~-i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls  106 (549)
T 2z81_A           30 SLDLSFNKITYIGHGDLRACANLQVLIL--KSSR-INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLM  106 (549)
T ss_dssp             EEECCSSCCCEECSSTTSSCTTCCEEEC--TTSC-CCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECT
T ss_pred             EEECcCCccCccChhhhhcCCcccEEEC--CCCC-cCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECC
Confidence            3445555555553  4567788888888  4443 3344433355778888888888887766554 7788888888888


Q ss_pred             CCCCCC---chhhhccCCCcEEEecCCC-Ccccc-ccccCCCCccEEeccCCCCCCccCcchhC----------------
Q 037732          143 NCKLLD---ITVIRDLKKLAVLCLRGSD-IKRLP-VEVGELTLLRLLDLRDCMELEVIPPNILS----------------  201 (350)
Q Consensus       143 ~~~l~~---~~~l~~l~~L~~L~l~~~~-~~~lp-~~l~~l~~L~~L~l~~~~~~~~~~~~~l~----------------  201 (350)
                      +|.+..   +..++.+++|++|++++|. +..+| ..+.++++|++|++++|......|.. ++                
T Consensus       107 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~l~~n~~~  185 (549)
T 2z81_A          107 GNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS-LKSIRDIHHLTLHLSESA  185 (549)
T ss_dssp             TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT-TTTCSEEEEEEEECSBST
T ss_pred             CCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh-hhccccCceEecccCccc
Confidence            887764   4567777888888887775 55665 35777777777777775443333333 33                


Q ss_pred             --------CCCCCcEEEcCCCCCCcchh---hhcc---------------------ccccc-------------------
Q 037732          202 --------NLSHLEELYMGPRSFDKWEV---EVEG---------------------VKNAS-------------------  230 (350)
Q Consensus       202 --------~l~~L~~L~l~~~~~~~~~~---~~~~---------------------~~~~~-------------------  230 (350)
                              .+++|++|++++|.+...+.   ....                     .++..                   
T Consensus       186 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~  265 (549)
T 2z81_A          186 FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG  265 (549)
T ss_dssp             THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEEC
T ss_pred             ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccc
Confidence                    45667777777666543210   0000                     00000                   


Q ss_pred             ----------------------------------------hhhcCCCceeEEEecCCCCCCccc--ccCCccEEEEEEcC
Q 037732          231 ----------------------------------------LHELKHLISLELQIQDVNTFPRGL--FLEKLETFKILIGG  268 (350)
Q Consensus       231 ----------------------------------------l~~l~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~  268 (350)
                                                              .....+|+.|++++|.+..+|..+  .+++|++|++..+.
T Consensus       266 ~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~  345 (549)
T 2z81_A          266 LGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENL  345 (549)
T ss_dssp             CSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSC
T ss_pred             cccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCc
Confidence                                                    111234556666666666666555  36777777776555


Q ss_pred             ccc-------ccccCccceEEEEeCCCcccchH--HHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEeCc
Q 037732          269 VWG-------WEYADIWCREFKIDLDSKIRLKD--GLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGS  339 (350)
Q Consensus       269 ~~~-------~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~  339 (350)
                      +..       .++.+++|+.|++++|....++.  .....+++|+.|++++|.++.   +|..+  ..+++|+.|++++|
T Consensus       346 l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~---lp~~~--~~~~~L~~L~Ls~N  420 (549)
T 2z81_A          346 MVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP---MPDSC--QWPEKMRFLNLSST  420 (549)
T ss_dssp             CCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCC---CCSCC--CCCTTCCEEECTTS
T ss_pred             cccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCcc---CChhh--cccccccEEECCCC
Confidence            432       24566777777777776666553  223345777777777777765   55555  55677777777777


Q ss_pred             cceeccCC
Q 037732          340 HLTLNPAE  347 (350)
Q Consensus       340 ~~~~~p~~  347 (350)
                      .++.+|..
T Consensus       421 ~l~~l~~~  428 (549)
T 2z81_A          421 GIRVVKTC  428 (549)
T ss_dssp             CCSCCCTT
T ss_pred             Ccccccch
Confidence            77666654

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.90  E-value=7.6e-23  Score=181.80  Aligned_cols=257  Identities=13%  Similarity=0.166  Sum_probs=188.3

Q ss_pred             eeecccccccccccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCC-CccccCcccccEEEecCCC
Q 037732           67 FSATEEQTNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSL-PSSLGLLSNLQNLSLYNCK  145 (350)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~~~  145 (350)
                      +...+..+..+|... .++++.|++  +.+ ....++...+..+++|++|++++|.+..+ |..+..+++|++|++++|.
T Consensus        36 l~~~~~~l~~lp~~~-~~~l~~L~L--~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  111 (330)
T 1xku_A           36 VQCSDLGLEKVPKDL-PPDTALLDL--QNN-KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ  111 (330)
T ss_dssp             EECTTSCCCSCCCSC-CTTCCEEEC--CSS-CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC
T ss_pred             EEecCCCccccCccC-CCCCeEEEC--CCC-cCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc
Confidence            334455666666422 368899999  444 45556654567899999999999998875 7788999999999999998


Q ss_pred             CCC-chhhhccCCCcEEEecCCCCccccc-cccCCCCccEEeccCCCCCC--ccCcchhCCCCCCcEEEcCCCCCCcchh
Q 037732          146 LLD-ITVIRDLKKLAVLCLRGSDIKRLPV-EVGELTLLRLLDLRDCMELE--VIPPNILSNLSHLEELYMGPRSFDKWEV  221 (350)
Q Consensus       146 l~~-~~~l~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~  221 (350)
                      +.. +..+.  ++|++|++++|.+..++. .+.++++|++|++++|....  ..+.. +.++++|++|++++|.+...  
T Consensus       112 l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l--  186 (330)
T 1xku_A          112 LKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA-FQGMKKLSYIRIADTNITTI--  186 (330)
T ss_dssp             CSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTG-GGGCTTCCEEECCSSCCCSC--
T ss_pred             CCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhh-ccCCCCcCEEECCCCccccC--
Confidence            887 54443  789999999998887765 47889999999998854422  33333 78889999999998887433  


Q ss_pred             hhccccccchhhcCCCceeEEEecCCCCCC-ccc-ccCCccEEEEEEcCcc----cccccCccceEEEEeCCCcccchHH
Q 037732          222 EVEGVKNASLHELKHLISLELQIQDVNTFP-RGL-FLEKLETFKILIGGVW----GWEYADIWCREFKIDLDSKIRLKDG  295 (350)
Q Consensus       222 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~-~~~-~~~~L~~L~l~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~  295 (350)
                            |..+.  ++|+.|++++|.+..++ ..+ .+++|++|++..+.+.    ..+..+++|+.|++++|....+|.+
T Consensus       187 ------~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~  258 (330)
T 1xku_A          187 ------PQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGG  258 (330)
T ss_dssp             ------CSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTT
T ss_pred             ------Ccccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChh
Confidence                  22222  68889999988887664 444 6788888888766542    2567888999999999888888877


Q ss_pred             HHHHhcccceeeeccccccchhhhhhhhcc----cCcCcceEEEEeCcccee
Q 037732          296 LILKLEGIEDLWLSYLEEQDVNYFVNELVK----VGPSQLKHLYIRGSHLTL  343 (350)
Q Consensus       296 ~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~----~~~~~L~~L~l~~~~~~~  343 (350)
                      +.. +++|+.|++++|.++.+  -+..+..    ...+.|+.|++.+|++..
T Consensus       259 l~~-l~~L~~L~l~~N~i~~~--~~~~f~~~~~~~~~~~l~~l~l~~N~~~~  307 (330)
T 1xku_A          259 LAD-HKYIQVVYLHNNNISAI--GSNDFCPPGYNTKKASYSGVSLFSNPVQY  307 (330)
T ss_dssp             TTT-CSSCCEEECCSSCCCCC--CTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred             hcc-CCCcCEEECCCCcCCcc--ChhhcCCcccccccccccceEeecCcccc
Confidence            654 58899999999988873  1122211    134788899999998864

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.89  E-value=1e-22  Score=194.19  Aligned_cols=267  Identities=17%  Similarity=0.116  Sum_probs=148.8

Q ss_pred             eeccccccccc--ccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCC-ccccCcccccEEEecCC
Q 037732           68 SATEEQTNLLL--EVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLP-SSLGLLSNLQNLSLYNC  144 (350)
Q Consensus        68 ~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~l~~l~~L~~L~l~~~  144 (350)
                      .++.+.+..++  .+.++++|++|++  +.+. ...++...|.++++|++|++++|.+..++ ..|..+++|++|++++|
T Consensus        34 ~Ls~n~l~~~~~~~~~~l~~L~~L~L--s~n~-i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  110 (570)
T 2z63_A           34 DLSFNPLRHLGSYSFFSFPELQVLDL--SRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET  110 (570)
T ss_dssp             ECCSCCCCEECTTTTTTCSSCCEEEC--TTCC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred             EccCCccCccChhHhhCCCCceEEEC--CCCc-CCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccccc
Confidence            34444454444  3456667777777  3332 34444444556677777777777666543 45666777777777777


Q ss_pred             CCCC-c-hhhhccCCCcEEEecCCCCcc--ccccccCCCCccEEeccCCCCCCccCcchhCCCCCC----cEEEcCCCCC
Q 037732          145 KLLD-I-TVIRDLKKLAVLCLRGSDIKR--LPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHL----EELYMGPRSF  216 (350)
Q Consensus       145 ~l~~-~-~~l~~l~~L~~L~l~~~~~~~--lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L----~~L~l~~~~~  216 (350)
                      .+.. + ..++.+++|++|++++|.+..  +|..++++++|++|++++|. +..++...++.+++|    +.|++++|.+
T Consensus       111 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~~~~~L~l~~n~l  189 (570)
T 2z63_A          111 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSLNPM  189 (570)
T ss_dssp             CCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC-CCEECGGGGHHHHTCTTCCCEEECTTCCC
T ss_pred             ccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc-cceecHHHccchhccchhhhhcccCCCCc
Confidence            6666 2 246667777777777776653  56666777777777776633 233322223333333    4444444433


Q ss_pred             Ccchh--------------------------------------------------------------------------h
Q 037732          217 DKWEV--------------------------------------------------------------------------E  222 (350)
Q Consensus       217 ~~~~~--------------------------------------------------------------------------~  222 (350)
                      ...+.                                                                          .
T Consensus       190 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~  269 (570)
T 2z63_A          190 NFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDY  269 (570)
T ss_dssp             CEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTE
T ss_pred             eecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchh
Confidence            22110                                                                          0


Q ss_pred             hccccccchhhcCCCceeEEEecCCCCCCccc-ccCCccEEEEEEcCcccc-----------------------cccCcc
Q 037732          223 VEGVKNASLHELKHLISLELQIQDVNTFPRGL-FLEKLETFKILIGGVWGW-----------------------EYADIW  278 (350)
Q Consensus       223 ~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~-----------------------~~~~~~  278 (350)
                      ..+..+..+..+++|+.|++++|.+..+|..+ .+ +|++|++..+.+...                       ...+++
T Consensus       270 ~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~  348 (570)
T 2z63_A          270 YLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPS  348 (570)
T ss_dssp             EESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTT
T ss_pred             hhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCC
Confidence            01223445666778888888888777777665 34 666666644332110                       135566


Q ss_pred             ceEEEEeCCCcccc---hHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEeCccceecc
Q 037732          279 CREFKIDLDSKIRL---KDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLTLNP  345 (350)
Q Consensus       279 L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~p  345 (350)
                      |+.|+++++.....   +..+. .+++|+.|++++|.+++   ++..+  ..+++|+.|++++|.++..+
T Consensus       349 L~~L~l~~n~l~~~~~~~~~~~-~~~~L~~L~l~~n~l~~---~~~~~--~~l~~L~~L~l~~n~l~~~~  412 (570)
T 2z63_A          349 LEFLDLSRNGLSFKGCCSQSDF-GTTSLKYLDLSFNGVIT---MSSNF--LGLEQLEHLDFQHSNLKQMS  412 (570)
T ss_dssp             CCEEECCSSCCBEEEEEEHHHH-TCSCCCEEECCSCSEEE---EEEEE--ETCTTCCEEECTTSEEESCT
T ss_pred             CCEEeCcCCccCcccccccccc-ccCccCEEECCCCcccc---ccccc--cccCCCCEEEccCCcccccc
Confidence            77777776655443   33443 35777777777776665   33333  45556666666665555543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.89  E-value=1.6e-22  Score=192.53  Aligned_cols=120  Identities=20%  Similarity=0.221  Sum_probs=99.0

Q ss_pred             ceeeecccccccccccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCC-CccccCcccccEEEecC
Q 037732           65 NVFSATEEQTNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSL-PSSLGLLSNLQNLSLYN  143 (350)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~  143 (350)
                      ..+..++..+..+|... .+++++|++  +.+. ...++...+..+++|++|++++|.++.+ |..|..+++|++|++++
T Consensus        34 ~~l~ls~~~L~~ip~~~-~~~L~~L~L--s~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~  109 (562)
T 3a79_B           34 SMVDYSNRNLTHVPKDL-PPRTKALSL--SQNS-ISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH  109 (562)
T ss_dssp             CEEECTTSCCCSCCTTS-CTTCCEEEC--CSSC-CCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred             cEEEcCCCCCccCCCCC-CCCcCEEEC--CCCC-ccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence            45666777888888633 389999999  4444 5566655567999999999999999975 67899999999999999


Q ss_pred             CCCCC-chhhhccCCCcEEEecCCCCcccc--ccccCCCCccEEeccCCC
Q 037732          144 CKLLD-ITVIRDLKKLAVLCLRGSDIKRLP--VEVGELTLLRLLDLRDCM  190 (350)
Q Consensus       144 ~~l~~-~~~l~~l~~L~~L~l~~~~~~~lp--~~l~~l~~L~~L~l~~~~  190 (350)
                      |.++. +..  .+++|++|++++|.+..+|  ..++++++|++|++++|.
T Consensus       110 N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~  157 (562)
T 3a79_B          110 NRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK  157 (562)
T ss_dssp             SCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB
T ss_pred             CcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCc
Confidence            99988 544  8999999999999998764  689999999999998854

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.89  E-value=1.8e-22  Score=179.56  Aligned_cols=257  Identities=14%  Similarity=0.151  Sum_probs=199.8

Q ss_pred             ceeeeccccccccc--ccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEec
Q 037732           65 NVFSATEEQTNLLL--EVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLY  142 (350)
Q Consensus        65 ~~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~  142 (350)
                      ..+.+.++.+..++  .+..+++|++|++  +.+. ...++...+..+++|++|++++|.+..+|..+.  ++|++|+++
T Consensus        57 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~L--~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~  131 (332)
T 2ft3_A           57 TLLDLQNNDISELRKDDFKGLQHLYALVL--VNNK-ISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIH  131 (332)
T ss_dssp             CEEECCSSCCCEECTTTTTTCTTCCEEEC--CSSC-CCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECC
T ss_pred             eEEECCCCcCCccCHhHhhCCCCCcEEEC--CCCc-cCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECC
Confidence            34556666777775  4778999999999  5554 445544446789999999999999998888765  899999999


Q ss_pred             CCCCCC-c-hhhhccCCCcEEEecCCCCc---cccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCC
Q 037732          143 NCKLLD-I-TVIRDLKKLAVLCLRGSDIK---RLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFD  217 (350)
Q Consensus       143 ~~~l~~-~-~~l~~l~~L~~L~l~~~~~~---~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  217 (350)
                      +|.+.. + ..+..+++|++|++++|.+.   ..|..+..+ +|+.|++++ +.+..+|.. +.  ++|++|++++|.+ 
T Consensus       132 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~-n~l~~l~~~-~~--~~L~~L~l~~n~i-  205 (332)
T 2ft3_A          132 DNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISE-AKLTGIPKD-LP--ETLNELHLDHNKI-  205 (332)
T ss_dssp             SSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCS-SBCSSCCSS-SC--SSCSCCBCCSSCC-
T ss_pred             CCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcC-CCCCccCcc-cc--CCCCEEECCCCcC-
Confidence            999988 3 56899999999999999886   345566777 999999999 456667775 22  7899999999988 


Q ss_pred             cchhhhccccccchhhcCCCceeEEEecCCCCCCcc-c-ccCCccEEEEEEcCc---ccccccCccceEEEEeCCCcccc
Q 037732          218 KWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRG-L-FLEKLETFKILIGGV---WGWEYADIWCREFKIDLDSKIRL  292 (350)
Q Consensus       218 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~---~~~~~~~~~L~~L~l~~~~~~~~  292 (350)
                            .+..+..+..+++|+.|++++|.+..++.. + .+++|++|++..+.+   +..+..+++|+.|++++|....+
T Consensus       206 ------~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~  279 (332)
T 2ft3_A          206 ------QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKV  279 (332)
T ss_dssp             ------CCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBC
T ss_pred             ------CccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCcc
Confidence                  444557789999999999999999888764 4 689999999976654   44578899999999999887776


Q ss_pred             hHHHHHH------hcccceeeeccccccchhhhhhhhcccCcCcceEEEEeCcc
Q 037732          293 KDGLILK------LEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSH  340 (350)
Q Consensus       293 ~~~~~~~------~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~  340 (350)
                      +...+..      .++|+.|++++|.+..+...+..+  ..+++|+.+++++|+
T Consensus       280 ~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~--~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          280 GVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATF--RCVTDRLAIQFGNYK  331 (332)
T ss_dssp             CTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGG--TTBCCSTTEEC----
T ss_pred             ChhHccccccccccccccceEeecCcccccccCcccc--cccchhhhhhccccc
Confidence            5432211      367999999999988543345556  779999999999885

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.89  E-value=2.5e-22  Score=174.72  Aligned_cols=214  Identities=17%  Similarity=0.161  Sum_probs=148.8

Q ss_pred             cEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCC-ccccCcccccEEEecCCCCCC--chhhhccCCCcEEEe
Q 037732           87 ELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLP-SSLGLLSNLQNLSLYNCKLLD--ITVIRDLKKLAVLCL  163 (350)
Q Consensus        87 ~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~l  163 (350)
                      +++++   .+.....+|..   -.++++.|+++++.+..++ ..|..+++|++|++++|.+..  +..+..+++|++|++
T Consensus        14 ~~~~c---~~~~l~~ip~~---~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   87 (285)
T 1ozn_A           14 VTTSC---PQQGLQAVPVG---IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL   87 (285)
T ss_dssp             CEEEC---CSSCCSSCCTT---CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             eEEEc---CcCCcccCCcC---CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeC
Confidence            56667   44456667754   3578999999999988755 468889999999999998877  567888999999999


Q ss_pred             cCCC-Cccc-cccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeE
Q 037732          164 RGSD-IKRL-PVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLE  241 (350)
Q Consensus       164 ~~~~-~~~l-p~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  241 (350)
                      ++|. +..+ |..+..+++|++|++++|. +..+++..+.++++|++|++++|.+.       +..+..++.+++|+.|+
T Consensus        88 ~~n~~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~-------~~~~~~~~~l~~L~~L~  159 (285)
T 1ozn_A           88 SDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNALQ-------ALPDDTFRDLGNLTHLF  159 (285)
T ss_dssp             CSCTTCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCC-------CCCTTTTTTCTTCCEEE
T ss_pred             CCCCCccccCHHHhcCCcCCCEEECCCCc-CCEECHhHhhCCcCCCEEECCCCccc-------ccCHhHhccCCCccEEE
Confidence            9986 7777 5578889999999999854 44454444788999999999988873       33345678889999999


Q ss_pred             EEecCCCCCCcc-c-ccCCccEEEEEEcCc----ccccccCccceEEEEeCCCcccchHHHHHHhcccceeeecccccc
Q 037732          242 LQIQDVNTFPRG-L-FLEKLETFKILIGGV----WGWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQ  314 (350)
Q Consensus       242 l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~  314 (350)
                      +++|.+..++.. + .+++|++|++..+.+    +..+..+++|+.|++++|....++......+++|+.|++++|.+.
T Consensus       160 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          160 LHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             CCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence            999988877665 2 455666666544432    223444555555555555444444333333455555555555443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.89  E-value=1.1e-22  Score=202.45  Aligned_cols=272  Identities=18%  Similarity=0.164  Sum_probs=148.1

Q ss_pred             eeccccccccc--ccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcC-CCccccCcccccEEEecCC
Q 037732           68 SATEEQTNLLL--EVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLS-LPSSLGLLSNLQNLSLYNC  144 (350)
Q Consensus        68 ~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~l~~l~~L~~L~l~~~  144 (350)
                      .++.+.+..++  .+.++++|++|++  +.+.....++...+.++++|++|++++|.+.. .|..|..+++|++|++++|
T Consensus        30 dLs~N~i~~i~~~~~~~l~~L~~LdL--s~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n  107 (844)
T 3j0a_A           30 LLSFNYIRTVTASSFPFLEQLQLLEL--GSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFC  107 (844)
T ss_dssp             EEESCCCCEECSSSCSSCCSCSEEEE--CTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTC
T ss_pred             ECCCCcCCccChhHCcccccCeEEeC--CCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCC
Confidence            33444444442  3456666666666  44444455533334566666667776666664 3556666666677776666


Q ss_pred             CCCC--chh--hhccCCCcEEEecCCCCcccc--ccccCCCCccEEeccCCCCCCccCcchhCCC--CC-----------
Q 037732          145 KLLD--ITV--IRDLKKLAVLCLRGSDIKRLP--VEVGELTLLRLLDLRDCMELEVIPPNILSNL--SH-----------  205 (350)
Q Consensus       145 ~l~~--~~~--l~~l~~L~~L~l~~~~~~~lp--~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l--~~-----------  205 (350)
                      .+.+  +..  ++++++|++|++++|.+..++  ..++++++|++|++++|......+.. +..+  ++           
T Consensus       108 ~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~-l~~l~~~~L~~L~L~~n~l  186 (844)
T 3j0a_A          108 GLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE-LEPLQGKTLSFFSLAANSL  186 (844)
T ss_dssp             CCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGG-GHHHHHCSSCCCEECCSBS
T ss_pred             CCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHH-cccccCCccceEECCCCcc
Confidence            6654  332  666666666666666665432  34666666666666664332222221 2211  22           


Q ss_pred             -------------------CcEEEcCCCCCCcchh-hhcc----------------------------ccccchhh--cC
Q 037732          206 -------------------LEELYMGPRSFDKWEV-EVEG----------------------------VKNASLHE--LK  235 (350)
Q Consensus       206 -------------------L~~L~l~~~~~~~~~~-~~~~----------------------------~~~~~l~~--l~  235 (350)
                                         |++|++++|.+..... ....                            .....+.+  .+
T Consensus       187 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~  266 (844)
T 3j0a_A          187 YSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARS  266 (844)
T ss_dssp             CCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTS
T ss_pred             ccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccC
Confidence                               4444444443211000 0000                            00001111  14


Q ss_pred             CCceeEEEecCCCCCCcc-c-ccCCccEEEEEEcCcc----cccccCccceEEEEeCCCcccchHHHHHHhcccceeeec
Q 037732          236 HLISLELQIQDVNTFPRG-L-FLEKLETFKILIGGVW----GWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLS  309 (350)
Q Consensus       236 ~L~~L~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~  309 (350)
                      +|+.|+++.|.+..++.. + .+++|+.|++..+.+.    ..+..+++|+.|++++|....++......+++|+.|+++
T Consensus       267 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  346 (844)
T 3j0a_A          267 SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQ  346 (844)
T ss_dssp             CCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECC
T ss_pred             CccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECC
Confidence            566666666666544333 2 4677777777655532    245667777777777766655432222235777777777


Q ss_pred             cccccchhhhhhhhcccCcCcceEEEEeCccceeccC
Q 037732          310 YLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLTLNPA  346 (350)
Q Consensus       310 ~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~p~  346 (350)
                      +|.++.+  .+..+  ..+++|+.|++++|.++.+|.
T Consensus       347 ~N~i~~~--~~~~~--~~l~~L~~L~Ls~N~l~~i~~  379 (844)
T 3j0a_A          347 KNHIAII--QDQTF--KFLEKLQTLDLRDNALTTIHF  379 (844)
T ss_dssp             SCCCCCC--CSSCS--CSCCCCCEEEEETCCSCCCSS
T ss_pred             CCCCCcc--Chhhh--cCCCCCCEEECCCCCCCcccC
Confidence            7777663  22334  567888888888888777654

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.88  E-value=2.3e-22  Score=191.67  Aligned_cols=144  Identities=17%  Similarity=0.205  Sum_probs=117.6

Q ss_pred             cccccccccccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCC-CccccCcccccEEEecCCCCCC
Q 037732           70 TEEQTNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSL-PSSLGLLSNLQNLSLYNCKLLD  148 (350)
Q Consensus        70 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~~~l~~  148 (350)
                      ...++..+|.. -.+++++|++  +.+. ...++...|.++++|++|++++|.+..+ |..|.++++|++|++++|.+..
T Consensus        15 ~~~~l~~ip~~-l~~~l~~L~L--s~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~   90 (570)
T 2z63_A           15 MELNFYKIPDN-LPFSTKNLDL--SFNP-LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS   90 (570)
T ss_dssp             CSSCCSSCCSS-SCSSCCEEEC--CSCC-CCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred             CCCCccccCCC-ccccccEEEc--cCCc-cCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCc
Confidence            34466777752 2368999999  4444 4555544467899999999999999875 4578999999999999999988


Q ss_pred             --chhhhccCCCcEEEecCCCCccccc-cccCCCCccEEeccCCCCCC-ccCcchhCCCCCCcEEEcCCCCCCc
Q 037732          149 --ITVIRDLKKLAVLCLRGSDIKRLPV-EVGELTLLRLLDLRDCMELE-VIPPNILSNLSHLEELYMGPRSFDK  218 (350)
Q Consensus       149 --~~~l~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~  218 (350)
                        +..++.+++|++|++++|.+..++. .++++++|++|++++|.... .+|.. ++++++|++|++++|.+..
T Consensus        91 ~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~l~~n~l~~  163 (570)
T 2z63_A           91 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQS  163 (570)
T ss_dssp             ECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECTTSCCCE
T ss_pred             cCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhh-hcccCCCCEEeCcCCccce
Confidence              4789999999999999999998876 68999999999999965443 46776 7999999999999998843

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.88  E-value=2.3e-22  Score=178.35  Aligned_cols=201  Identities=18%  Similarity=0.132  Sum_probs=170.5

Q ss_pred             CcccccEEEecCCCCCC-chhhhccCCCcEEEecCCCCccccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEE
Q 037732          132 LLSNLQNLSLYNCKLLD-ITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELY  210 (350)
Q Consensus       132 ~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~  210 (350)
                      ....++.|++++|.+.. ++.++++++|++|++++|.+..+|..++++++|++|++++|. +..+|.. ++++++|++|+
T Consensus        79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~-l~~l~~L~~L~  156 (328)
T 4fcg_A           79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP-LRALPAS-IASLNRLRELS  156 (328)
T ss_dssp             TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCC-CCCCCGG-GGGCTTCCEEE
T ss_pred             cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCc-cccCcHH-HhcCcCCCEEE
Confidence            35789999999999988 788999999999999999999999999999999999999954 5588887 89999999999


Q ss_pred             cCCCCCCcchhhhccccccch---------hhcCCCceeEEEecCCCCCCccc-ccCCccEEEEEEcCc---ccccccCc
Q 037732          211 MGPRSFDKWEVEVEGVKNASL---------HELKHLISLELQIQDVNTFPRGL-FLEKLETFKILIGGV---WGWEYADI  277 (350)
Q Consensus       211 l~~~~~~~~~~~~~~~~~~~l---------~~l~~L~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~---~~~~~~~~  277 (350)
                      +++|..       .+.+|..+         +++++|+.|++++|.+..+|..+ .+++|++|++..+.+   +..+..++
T Consensus       157 L~~n~~-------~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~  229 (328)
T 4fcg_A          157 IRACPE-------LTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLP  229 (328)
T ss_dssp             EEEETT-------CCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCT
T ss_pred             CCCCCC-------ccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCC
Confidence            999876       44555554         45999999999999999999988 789999999987664   44577899


Q ss_pred             cceEEEEeCC-CcccchHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEeCcccee-ccC
Q 037732          278 WCREFKIDLD-SKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLTL-NPA  346 (350)
Q Consensus       278 ~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~-~p~  346 (350)
                      +|+.|++++| ....+|..+.. +++|+.|+|++|.+.+.  +|..+  ..+++|+.|+|++|++.+ +|+
T Consensus       230 ~L~~L~Ls~n~~~~~~p~~~~~-l~~L~~L~L~~n~~~~~--~p~~~--~~l~~L~~L~L~~n~~~~~iP~  295 (328)
T 4fcg_A          230 KLEELDLRGCTALRNYPPIFGG-RAPLKRLILKDCSNLLT--LPLDI--HRLTQLEKLDLRGCVNLSRLPS  295 (328)
T ss_dssp             TCCEEECTTCTTCCBCCCCTTC-CCCCCEEECTTCTTCCB--CCTTG--GGCTTCCEEECTTCTTCCCCCG
T ss_pred             CCCEEECcCCcchhhhHHHhcC-CCCCCEEECCCCCchhh--cchhh--hcCCCCCEEeCCCCCchhhccH
Confidence            9999999995 44556655554 69999999999888774  78778  789999999999988665 443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.88  E-value=3.2e-22  Score=174.32  Aligned_cols=202  Identities=19%  Similarity=0.200  Sum_probs=143.6

Q ss_pred             cCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCC-CccccCcccccEEEecCCCCCCchhhhccCCC
Q 037732           80 VVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSL-PSSLGLLSNLQNLSLYNCKLLDITVIRDLKKL  158 (350)
Q Consensus        80 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~~~l~~~~~l~~l~~L  158 (350)
                      +.++++++.+++   .+.....+|..+   .++++.|++++|.+..+ +..+..+++|++|++++|.++..+..+.+++|
T Consensus         6 ~~~l~~l~~l~~---~~~~l~~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L   79 (290)
T 1p9a_G            6 VSKVASHLEVNC---DKRNLTALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVL   79 (290)
T ss_dssp             EECSTTCCEEEC---TTSCCSSCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTC
T ss_pred             ccccCCccEEEC---CCCCCCcCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcC
Confidence            445677788888   344455666543   35778888888887754 45677888888888888887773334677888


Q ss_pred             cEEEecCCCCccccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCc
Q 037732          159 AVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLI  238 (350)
Q Consensus       159 ~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~  238 (350)
                      ++|++++|.+..+|..+..+++|++|++++ +.+..+++..+.++++|++|++++|.+.       +..+..+..+++|+
T Consensus        80 ~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~-N~l~~l~~~~~~~l~~L~~L~L~~N~l~-------~~~~~~~~~l~~L~  151 (290)
T 1p9a_G           80 GTLDLSHNQLQSLPLLGQTLPALTVLDVSF-NRLTSLPLGALRGLGELQELYLKGNELK-------TLPPGLLTPTPKLE  151 (290)
T ss_dssp             CEEECCSSCCSSCCCCTTTCTTCCEEECCS-SCCCCCCSSTTTTCTTCCEEECTTSCCC-------CCCTTTTTTCTTCC
T ss_pred             CEEECCCCcCCcCchhhccCCCCCEEECCC-CcCcccCHHHHcCCCCCCEEECCCCCCC-------ccChhhcccccCCC
Confidence            888888888888887777788888888887 4455566544777888888888887773       23334567777888


Q ss_pred             eeEEEecCCCCCCcccccCCccEEEEEEcCcccccccCccceEEEEeCCCcccchHHHHHHhcccceeeecccccc
Q 037732          239 SLELQIQDVNTFPRGLFLEKLETFKILIGGVWGWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQ  314 (350)
Q Consensus       239 ~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~  314 (350)
                      .|++++|.+..+|...                  +..+++|+.|++++|....+|.+++.. ++|+.|+|++|.+.
T Consensus       152 ~L~L~~N~l~~l~~~~------------------~~~l~~L~~L~L~~N~l~~ip~~~~~~-~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          152 KLSLANNNLTELPAGL------------------LNGLENLDTLLLQENSLYTIPKGFFGS-HLLPFAFLHGNPWL  208 (290)
T ss_dssp             EEECTTSCCSCCCTTT------------------TTTCTTCCEEECCSSCCCCCCTTTTTT-CCCSEEECCSCCBC
T ss_pred             EEECCCCcCCccCHHH------------------hcCcCCCCEEECCCCcCCccChhhccc-ccCCeEEeCCCCcc
Confidence            8888888777776652                  345667777888887777777766653 67888888887654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.88  E-value=7.9e-22  Score=171.55  Aligned_cols=259  Identities=16%  Similarity=0.158  Sum_probs=195.3

Q ss_pred             eeecccccccccccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCC-CccccCcccccEEEecCCC
Q 037732           67 FSATEEQTNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSL-PSSLGLLSNLQNLSLYNCK  145 (350)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~~~  145 (350)
                      +......+..+|. .-.+++++|++  +. +....++...+..+++|++|++++|.+..+ |..+..+++|++|++++|.
T Consensus        16 ~~c~~~~l~~ip~-~~~~~l~~L~l--~~-n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~   91 (285)
T 1ozn_A           16 TSCPQQGLQAVPV-GIPAASQRIFL--HG-NRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA   91 (285)
T ss_dssp             EECCSSCCSSCCT-TCCTTCSEEEC--TT-SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred             EEcCcCCcccCCc-CCCCCceEEEe--eC-CcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence            3445556777764 23579999999  44 445566655567899999999999999875 7789999999999999997


Q ss_pred             -CCC--chhhhccCCCcEEEecCCCCccc-cccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchh
Q 037732          146 -LLD--ITVIRDLKKLAVLCLRGSDIKRL-PVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEV  221 (350)
Q Consensus       146 -l~~--~~~l~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  221 (350)
                       +..  +..+..+++|++|++++|.+..+ |..+.++++|++|++++| .+..++...++++++|++|++++|.+.    
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~----  166 (285)
T 1ozn_A           92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGNRIS----  166 (285)
T ss_dssp             TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC----
T ss_pred             CccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCC-cccccCHhHhccCCCccEEECCCCccc----
Confidence             776  57889999999999999999877 456889999999999994 455666655789999999999999883    


Q ss_pred             hhccccccchhhcCCCceeEEEecCCCCC-Cccc-ccCCccEEEEEEcCccc----ccccCccceEEEEeCCCcccchHH
Q 037732          222 EVEGVKNASLHELKHLISLELQIQDVNTF-PRGL-FLEKLETFKILIGGVWG----WEYADIWCREFKIDLDSKIRLKDG  295 (350)
Q Consensus       222 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~l-~~~~-~~~~L~~L~l~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~  295 (350)
                         +..+..+..+++|+.|++++|.+..+ |..+ .+++|+.|++..+.+..    .+..+++|+.|++++|........
T Consensus       167 ---~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~  243 (285)
T 1ozn_A          167 ---SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA  243 (285)
T ss_dssp             ---EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred             ---ccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCc
Confidence               33345688899999999999998876 5555 68999999998766433    467899999999999755432221


Q ss_pred             HHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEeCcc
Q 037732          296 LILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSH  340 (350)
Q Consensus       296 ~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~  340 (350)
                      .. ....++.+....+.+...  .|..+....+..++..++.+|.
T Consensus       244 ~~-~~~~l~~~~~~~~~~~c~--~p~~l~g~~l~~l~~~~l~~C~  285 (285)
T 1ozn_A          244 RP-LWAWLQKFRGSSSEVPCS--LPQRLAGRDLKRLAANDLQGCA  285 (285)
T ss_dssp             HH-HHHHHHHCCSEECCCBEE--ESGGGTTCBGGGSCGGGSCCC-
T ss_pred             HH-HHHHHHhcccccCccccC--CchHhCCcChhhcCHHHhccCC
Confidence            11 123455566676666652  5666644556777776676663

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.88  E-value=5.2e-22  Score=197.47  Aligned_cols=265  Identities=14%  Similarity=0.107  Sum_probs=190.9

Q ss_pred             eeecccccccccccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCc-CC-CccccCcccccEEEecCC
Q 037732           67 FSATEEQTNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLL-SL-PSSLGLLSNLQNLSLYNC  144 (350)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~l-p~~l~~l~~L~~L~l~~~  144 (350)
                      ......++..+|.  ..+++++|++  +.+......+.. +.++++|++|++++|... .+ |..|.++++|++|++++|
T Consensus         9 ~dcs~~~L~~vP~--lp~~l~~LdL--s~N~i~~i~~~~-~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N   83 (844)
T 3j0a_A            9 AFYRFCNLTQVPQ--VLNTTERLLL--SFNYIRTVTASS-FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS   83 (844)
T ss_dssp             EEESCCCSSCCCS--SCTTCCEEEE--ESCCCCEECSSS-CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred             EEccCCCCCCCCC--CCCCcCEEEC--CCCcCCccChhH-CcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence            3445567888887  5689999999  555544433444 578999999999999544 45 778999999999999999


Q ss_pred             CCCC--chhhhccCCCcEEEecCCCCcc-cccc--ccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcc
Q 037732          145 KLLD--ITVIRDLKKLAVLCLRGSDIKR-LPVE--VGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKW  219 (350)
Q Consensus       145 ~l~~--~~~l~~l~~L~~L~l~~~~~~~-lp~~--l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  219 (350)
                      .+..  +..++.+++|++|++++|.+.. +|..  +.++++|++|++++|......+...++++++|++|++++|.+.. 
T Consensus        84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~-  162 (844)
T 3j0a_A           84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL-  162 (844)
T ss_dssp             CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC-
T ss_pred             cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe-
Confidence            9987  6889999999999999998884 5554  89999999999999665544443348999999999999998743 


Q ss_pred             hhhhccccccchhhc--CC------------------------------CceeEEEecCCC-CCCccc------------
Q 037732          220 EVEVEGVKNASLHEL--KH------------------------------LISLELQIQDVN-TFPRGL------------  254 (350)
Q Consensus       220 ~~~~~~~~~~~l~~l--~~------------------------------L~~L~l~~~~~~-~l~~~~------------  254 (350)
                            ..+..+..+  ++                              |+.|++++|.+. ..+..+            
T Consensus       163 ------~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L  236 (844)
T 3j0a_A          163 ------VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSL  236 (844)
T ss_dssp             ------CCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEE
T ss_pred             ------eCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccce
Confidence                  223333333  33                              555555555332 111110            


Q ss_pred             ---------------------------ccCCccEEEEEEcCc----ccccccCccceEEEEeCCCcccchHHHHHHhccc
Q 037732          255 ---------------------------FLEKLETFKILIGGV----WGWEYADIWCREFKIDLDSKIRLKDGLILKLEGI  303 (350)
Q Consensus       255 ---------------------------~~~~L~~L~l~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L  303 (350)
                                                 ..++|+.|++..+.+    +..++.+++|+.|++++|.....+...+..+++|
T Consensus       237 ~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L  316 (844)
T 3j0a_A          237 ILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNL  316 (844)
T ss_dssp             ECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSC
T ss_pred             ecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCC
Confidence                                       014566666644432    2346778888888888877766544333446889


Q ss_pred             ceeeeccccccchhhhhhhhcccCcCcceEEEEeCccceeccCC
Q 037732          304 EDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLTLNPAE  347 (350)
Q Consensus       304 ~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~p~~  347 (350)
                      +.|+|++|.+++.  .+..+  ..+++|+.|++++|.++.+|+.
T Consensus       317 ~~L~Ls~N~l~~~--~~~~~--~~l~~L~~L~L~~N~i~~~~~~  356 (844)
T 3j0a_A          317 QVLNLSYNLLGEL--YSSNF--YGLPKVAYIDLQKNHIAIIQDQ  356 (844)
T ss_dssp             CEEEEESCCCSCC--CSCSC--SSCTTCCEEECCSCCCCCCCSS
T ss_pred             CEEECCCCCCCcc--CHHHh--cCCCCCCEEECCCCCCCccChh
Confidence            9999998888774  45566  6788999999999988887764

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.88  E-value=1.4e-21  Score=180.97  Aligned_cols=199  Identities=13%  Similarity=0.092  Sum_probs=95.4

Q ss_pred             ecccccccccccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCC
Q 037732           69 ATEEQTNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLD  148 (350)
Q Consensus        69 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~  148 (350)
                      +....+..+|.+..+++|++|++  +.+. ...++   +..+++|++|++++|.++.++  ++.+++|++|++++|.++.
T Consensus        49 Ls~n~l~~~~~l~~l~~L~~L~L--s~n~-l~~~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~~  120 (457)
T 3bz5_A           49 CHNSSITDMTGIEKLTGLTKLIC--TSNN-ITTLD---LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTK  120 (457)
T ss_dssp             CCSSCCCCCTTGGGCTTCSEEEC--CSSC-CSCCC---CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCSC
T ss_pred             ccCCCcccChhhcccCCCCEEEc--cCCc-CCeEc---cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCcCCe
Confidence            33344444444445555555555  2222 22232   234555555555555555443  4455555555555555544


Q ss_pred             chhhhccCCCcEEEecCCCCccccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccc
Q 037732          149 ITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKN  228 (350)
Q Consensus       149 ~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~  228 (350)
                      .+ ++.+++|++|++++|.++.++  ++.+++|+.|++++|..++.++   ++.+++|++|++++|.+..        ++
T Consensus       121 l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~--------l~  186 (457)
T 3bz5_A          121 LD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITE--------LD  186 (457)
T ss_dssp             CC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCC--------CC
T ss_pred             ec-CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccce--------ec
Confidence            22 445555555555555555442  4455555555555544444331   3455555555555555421        11


Q ss_pred             cchhhcCCCceeEEEecCCCCCCccc-ccCCccEEEEEEcCccc-ccccCccceEEEEeCCCcccch
Q 037732          229 ASLHELKHLISLELQIQDVNTFPRGL-FLEKLETFKILIGGVWG-WEYADIWCREFKIDLDSKIRLK  293 (350)
Q Consensus       229 ~~l~~l~~L~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~  293 (350)
                        ++.+++|+.|++++|.+..++  + .+++|++|++..+.+.. -++.+++|+.|++++|.....|
T Consensus       187 --l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~ip~~~l~~L~~L~l~~N~l~~~~  249 (457)
T 3bz5_A          187 --VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNPLTELD  249 (457)
T ss_dssp             --CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCC
T ss_pred             --cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccccCccccCCCCEEEeeCCcCCCcC
Confidence              444555555555555555442  2 34555555554333221 1344555555555555444443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.88  E-value=4.9e-24  Score=187.94  Aligned_cols=217  Identities=16%  Similarity=0.113  Sum_probs=122.1

Q ss_pred             ceEEeecCCcCcC--CCcccc-------CcccccEEEecCCCCCC--chhh--hccCCCcEEEecCCCCccccccccCC-
Q 037732          113 VRVINFSYMNLLS--LPSSLG-------LLSNLQNLSLYNCKLLD--ITVI--RDLKKLAVLCLRGSDIKRLPVEVGEL-  178 (350)
Q Consensus       113 L~~L~l~~~~~~~--lp~~l~-------~l~~L~~L~l~~~~l~~--~~~l--~~l~~L~~L~l~~~~~~~lp~~l~~l-  178 (350)
                      ++.|+++++.+..  +|..+.       .+++|++|++++|.+++  +..+  ..+++|++|++++|.+..+|..+..+ 
T Consensus        65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~  144 (312)
T 1wwl_A           65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQ  144 (312)
T ss_dssp             HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHH
T ss_pred             HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHH
Confidence            5555555555432  343333       45555555555555543  3333  45555555555555555444444443 


Q ss_pred             ----CCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccch--hhcCCCceeEEEecCCCCCC-
Q 037732          179 ----TLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASL--HELKHLISLELQIQDVNTFP-  251 (350)
Q Consensus       179 ----~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~l~-  251 (350)
                          ++|++|++++|. +..++...++++++|++|++++|.+....     ..+..+  +.+++|+.|++++|.+..++ 
T Consensus       145 ~~~~~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-----~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  218 (312)
T 1wwl_A          145 QWLKPGLKVLSIAQAH-SLNFSCEQVRVFPALSTLDLSDNPELGER-----GLISALCPLKFPTLQVLALRNAGMETPSG  218 (312)
T ss_dssp             TTCCTTCCEEEEESCS-CCCCCTTTCCCCSSCCEEECCSCTTCHHH-----HHHHHSCTTSCTTCCEEECTTSCCCCHHH
T ss_pred             HhhcCCCcEEEeeCCC-CccchHHHhccCCCCCEEECCCCCcCcch-----HHHHHHHhccCCCCCEEECCCCcCcchHH
Confidence                555555555532 23333222455555555555555442110     011112  44555555555555554222 


Q ss_pred             --ccc--ccCCccEEEEEEcCcc-----cccccCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccchhhhhhh
Q 037732          252 --RGL--FLEKLETFKILIGGVW-----GWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNE  322 (350)
Q Consensus       252 --~~~--~~~~L~~L~l~~~~~~-----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~  322 (350)
                        ..+  .+++|++|++..+.+.     ..+..+++|+.|++++|....+|..+.   ++|+.|++++|++++   +|. 
T Consensus       219 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~---~~L~~L~Ls~N~l~~---~p~-  291 (312)
T 1wwl_A          219 VCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP---AKLSVLDLSYNRLDR---NPS-  291 (312)
T ss_dssp             HHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC---SEEEEEECCSSCCCS---CCC-
T ss_pred             HHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc---CCceEEECCCCCCCC---Chh-
Confidence              111  2345555555433322     123456889999999988888887654   799999999999998   444 


Q ss_pred             hcccCcCcceEEEEeCccceec
Q 037732          323 LVKVGPSQLKHLYIRGSHLTLN  344 (350)
Q Consensus       323 l~~~~~~~L~~L~l~~~~~~~~  344 (350)
                      +  ..+++|+.|++++|+++..
T Consensus       292 ~--~~l~~L~~L~L~~N~l~~~  311 (312)
T 1wwl_A          292 P--DELPQVGNLSLKGNPFLDS  311 (312)
T ss_dssp             T--TTSCEEEEEECTTCTTTCC
T ss_pred             H--hhCCCCCEEeccCCCCCCC
Confidence            5  7899999999999998763

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.87  E-value=2.4e-21  Score=184.82  Aligned_cols=240  Identities=19%  Similarity=0.179  Sum_probs=168.4

Q ss_pred             eeeecccccccccccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCC
Q 037732           66 VFSATEEQTNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCK  145 (350)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~  145 (350)
                      .+..++..+..+|.... ++|+.|++  +.+ ....+|.    .+++|++|++++|.++.+|.   .+++|++|++++|.
T Consensus        44 ~L~ls~n~L~~lp~~l~-~~L~~L~L--~~N-~l~~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~  112 (622)
T 3g06_A           44 VLNVGESGLTTLPDCLP-AHITTLVI--PDN-NLTSLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNP  112 (622)
T ss_dssp             EEECCSSCCSCCCSCCC-TTCSEEEE--CSC-CCSCCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCC
T ss_pred             EEEecCCCcCccChhhC-CCCcEEEe--cCC-CCCCCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCc
Confidence            45566667777775333 68888888  333 4456665    46788888888888877776   56788888888888


Q ss_pred             CCCchhhhccCCCcEEEecCCCCccccccccCCCCccEEeccCCCCCCccCcchhC-----------------CCCCCcE
Q 037732          146 LLDITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILS-----------------NLSHLEE  208 (350)
Q Consensus       146 l~~~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~-----------------~l~~L~~  208 (350)
                      ++.++.  .+.+|+.|++++|++..+|..   +++|++|++++| .+..+|.. +.                 .+++|+.
T Consensus       113 l~~l~~--~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N-~l~~l~~~-~~~L~~L~L~~N~l~~l~~~~~~L~~  185 (622)
T 3g06_A          113 LTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPAL-PSELCKLWAYNNQLTSLPMLPSGLQE  185 (622)
T ss_dssp             CCCCCC--CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSCCCCC-CTTCCEEECCSSCCSCCCCCCTTCCE
T ss_pred             CCCCCC--CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCC-cCCCcCCc-cCCCCEEECCCCCCCCCcccCCCCcE
Confidence            777322  567777777777777777753   367777777774 33334331 11                 1255666


Q ss_pred             EEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCCCCCCcccccCCccEEEEEEcCcccccccCccceEEEEeCCC
Q 037732          209 LYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRGLFLEKLETFKILIGGVWGWEYADIWCREFKIDLDS  288 (350)
Q Consensus       209 L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~  288 (350)
                      |++++|.+..        +|.   .+++|+.|++++|.+..+|..  +++|+.|++..+.+..+-..+++|+.|++++|.
T Consensus       186 L~Ls~N~l~~--------l~~---~~~~L~~L~L~~N~l~~l~~~--~~~L~~L~Ls~N~L~~lp~~l~~L~~L~Ls~N~  252 (622)
T 3g06_A          186 LSVSDNQLAS--------LPT---LPSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLTSLPVLPSELKELMVSGNR  252 (622)
T ss_dssp             EECCSSCCSC--------CCC---CCTTCCEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSC
T ss_pred             EECCCCCCCC--------CCC---ccchhhEEECcCCcccccCCC--CCCCCEEEccCCccCcCCCCCCcCcEEECCCCC
Confidence            6666655532        222   135677777777777777665  578888888777665544667889999999988


Q ss_pred             cccchHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEeCccceecc
Q 037732          289 KIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLTLNP  345 (350)
Q Consensus       289 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~p  345 (350)
                      ...+|.    .+++|+.|+|++|.++.   +|..+  ..+++|+.|+|++|++++.+
T Consensus       253 L~~lp~----~~~~L~~L~Ls~N~L~~---lp~~l--~~l~~L~~L~L~~N~l~~~~  300 (622)
T 3g06_A          253 LTSLPM----LPSGLLSLSVYRNQLTR---LPESL--IHLSSETTVNLEGNPLSERT  300 (622)
T ss_dssp             CSCCCC----CCTTCCEEECCSSCCCS---CCGGG--GGSCTTCEEECCSCCCCHHH
T ss_pred             CCcCCc----ccccCcEEeCCCCCCCc---CCHHH--hhccccCEEEecCCCCCCcC
Confidence            888875    46899999999999986   77777  78999999999999988654

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.87  E-value=8.1e-23  Score=180.54  Aligned_cols=234  Identities=14%  Similarity=0.063  Sum_probs=112.5

Q ss_pred             CCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCCchhhhccCCCcEEE
Q 037732           83 CPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLC  162 (350)
Q Consensus        83 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~  162 (350)
                      +++|++|++  +.+ ....++...+..+++|+.|++++|.+...+. +..+++|++|++++|.++..+   ..++|++|+
T Consensus        33 ~~~L~~L~L--~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~---~~~~L~~L~  105 (317)
T 3o53_A           33 AWNVKELDL--SGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL---VGPSIETLH  105 (317)
T ss_dssp             GGGCSEEEC--TTS-CCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEE---ECTTCCEEE
T ss_pred             CCCCCEEEC--cCC-ccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcccccc---CCCCcCEEE
Confidence            445666666  332 2333443334556666666666666554433 556666666666666554411   225566666


Q ss_pred             ecCCCCccccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccch-hhcCCCceeE
Q 037732          163 LRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASL-HELKHLISLE  241 (350)
Q Consensus       163 l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l-~~l~~L~~L~  241 (350)
                      +++|.+..++..  .+++|++|++++|. +..++...++.+++|++|++++|.+.       +..+..+ ..+++|+.|+
T Consensus       106 l~~n~l~~~~~~--~~~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~-------~~~~~~~~~~l~~L~~L~  175 (317)
T 3o53_A          106 AANNNISRVSCS--RGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEID-------TVNFAELAASSDTLEHLN  175 (317)
T ss_dssp             CCSSCCSEEEEC--CCSSCEEEECCSSC-CCSGGGBCTGGGSSEEEEECTTSCCC-------EEEGGGGGGGTTTCCEEE
T ss_pred             CCCCccCCcCcc--ccCCCCEEECCCCC-CCCccchhhhccCCCCEEECCCCCCC-------cccHHHHhhccCcCCEEE
Confidence            666665544432  24556666666533 33333322455566666666666552       2222223 3455666666


Q ss_pred             EEecCCCCCCcccccCCccEEEEEEcCcc---cccccCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccchhh
Q 037732          242 LQIQDVNTFPRGLFLEKLETFKILIGGVW---GWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNY  318 (350)
Q Consensus       242 l~~~~~~~l~~~~~~~~L~~L~l~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~  318 (350)
                      +++|.+..++....+++|++|++..+.+.   ..+..+++|+.|++++|....+|..+.. +++|+.|++++|.++.. .
T Consensus       176 L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~-l~~L~~L~l~~N~~~~~-~  253 (317)
T 3o53_A          176 LQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRF-SQNLEHFDLRGNGFHCG-T  253 (317)
T ss_dssp             CTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCC-CTTCCEEECTTCCCBHH-H
T ss_pred             CCCCcCcccccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhc-CCCCCEEEccCCCccCc-C
Confidence            66666555543334444555554433321   1233444444444444444444433222 34444444444444410 1


Q ss_pred             hhhhhcccCcCcceEEEEe
Q 037732          319 FVNELVKVGPSQLKHLYIR  337 (350)
Q Consensus       319 ~~~~l~~~~~~~L~~L~l~  337 (350)
                      ++..+  ..+++|+.|++.
T Consensus       254 ~~~~~--~~~~~L~~l~l~  270 (317)
T 3o53_A          254 LRDFF--SKNQRVQTVAKQ  270 (317)
T ss_dssp             HHHHH--HTCHHHHHHHHH
T ss_pred             HHHHH--hccccceEEECC
Confidence            33333  344444444444

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.87  E-value=9.8e-22  Score=191.31  Aligned_cols=254  Identities=15%  Similarity=0.113  Sum_probs=122.0

Q ss_pred             ccCCCCCccEEEecccCCccc--------cccChHHHhcCCcceEEeecCCcCcCC-CccccCcccccEEEecCCCC---
Q 037732           79 EVVECPQLELLFICADKESSS--------LTIPNKFFERMIQVRVINFSYMNLLSL-PSSLGLLSNLQNLSLYNCKL---  146 (350)
Q Consensus        79 ~~~~~~~L~~L~l~~~~~~~~--------~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~~~l---  146 (350)
                      .+..+++|+.|++  ..+...        ..+....+..+++|+.|++++|.+..+ +..|..+++|++|++++|.+   
T Consensus       291 ~~~~l~~L~~L~L--~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~  368 (680)
T 1ziw_A          291 SLHGLFNVRYLNL--KRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLR  368 (680)
T ss_dssp             TTTTCTTCCEEEC--TTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCC
T ss_pred             hhcCCCCccEEec--cchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhh
Confidence            3456677777777  322111        112222244566777777777766653 33456666666666665542   


Q ss_pred             -------------------------CC--chhhhccCCCcEEEecCCCCc-ccc-ccccCCCCccEEeccCCCCCCccCc
Q 037732          147 -------------------------LD--ITVIRDLKKLAVLCLRGSDIK-RLP-VEVGELTLLRLLDLRDCMELEVIPP  197 (350)
Q Consensus       147 -------------------------~~--~~~l~~l~~L~~L~l~~~~~~-~lp-~~l~~l~~L~~L~l~~~~~~~~~~~  197 (350)
                                               ..  +..+..+++|++|++++|.+. .+| ..+..+++|+.|++++|.. ..++.
T Consensus       369 ~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~  447 (680)
T 1ziw_A          369 TLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKY-LQLTR  447 (680)
T ss_dssp             EECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSE-EECCT
T ss_pred             hcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCc-ceeCh
Confidence                                     22  123333444444444444433 222 2333444444444444221 11111


Q ss_pred             chhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCCCCCCccc--ccCCccEEEEEEcCccc----
Q 037732          198 NILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRGL--FLEKLETFKILIGGVWG----  271 (350)
Q Consensus       198 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~----  271 (350)
                      ..+..+++|+.|++++|.+..     .+..|..++++++|+.|++++|.+..++...  .+++|++|++..+.+..    
T Consensus       448 ~~~~~~~~L~~L~l~~n~l~~-----~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~  522 (680)
T 1ziw_A          448 NSFALVPSLQRLMLRRVALKN-----VDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKH  522 (680)
T ss_dssp             TTTTTCTTCCEEECTTSCCBC-----TTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGST
T ss_pred             hhhhcCcccccchhccccccc-----cccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchh
Confidence            112333333333333333211     1244555666666777777766666655543  45666666665443321    


Q ss_pred             --------ccccCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccchhhhhh-hhcccCcCcceEEEEeCccce
Q 037732          272 --------WEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVN-ELVKVGPSQLKHLYIRGSHLT  342 (350)
Q Consensus       272 --------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~-~l~~~~~~~L~~L~l~~~~~~  342 (350)
                              .+..+++|+.|++++|....+|...+..+++|+.|+|++|.++.   +|. .+  ..+++|+.|++++|.++
T Consensus       523 ~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~---l~~~~~--~~l~~L~~L~L~~N~l~  597 (680)
T 1ziw_A          523 ANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNT---LPASVF--NNQVSLKSLNLQKNLIT  597 (680)
T ss_dssp             TSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC---CCTTTT--TTCTTCCEEECTTSCCC
T ss_pred             hccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCc---CCHhHh--CCCCCCCEEECCCCcCC
Confidence                    14455566666666655555554333334556666665555554   222 22  34455555555555555


Q ss_pred             ecc
Q 037732          343 LNP  345 (350)
Q Consensus       343 ~~p  345 (350)
                      .+|
T Consensus       598 ~~~  600 (680)
T 1ziw_A          598 SVE  600 (680)
T ss_dssp             BCC
T ss_pred             ccC
Confidence            444

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.87  E-value=3.1e-22  Score=175.92  Aligned_cols=224  Identities=15%  Similarity=0.070  Sum_probs=177.0

Q ss_pred             cEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCcc-ccCcccccEEEecCCCCCC----chhhhccCCCcEE
Q 037732           87 ELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSS-LGLLSNLQNLSLYNCKLLD----ITVIRDLKKLAVL  161 (350)
Q Consensus        87 ~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-l~~l~~L~~L~l~~~~l~~----~~~l~~l~~L~~L  161 (350)
                      +.+.+   .+.....+|..+   .++++.|++++|.++.+|.. |.++++|++|++++|.+..    +..+..+++|++|
T Consensus        10 ~~l~c---~~~~l~~ip~~~---~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L   83 (306)
T 2z66_A           10 TEIRC---NSKGLTSVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYL   83 (306)
T ss_dssp             TEEEC---CSSCCSSCCSCC---CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEE
T ss_pred             CEEEc---CCCCcccCCCCC---CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEE
Confidence            45666   344566777643   36899999999999988775 6899999999999999875    4677789999999


Q ss_pred             EecCCCCccccccccCCCCccEEeccCCCCCCccCc-chhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCcee
Q 037732          162 CLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPP-NILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISL  240 (350)
Q Consensus       162 ~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L  240 (350)
                      ++++|.+..+|..+..+++|++|++++|. +..++. ..+.++++|++|++++|.+       .+..+..+..+++|+.|
T Consensus        84 ~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l-------~~~~~~~~~~l~~L~~L  155 (306)
T 2z66_A           84 DLSFNGVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHT-------RVAFNGIFNGLSSLEVL  155 (306)
T ss_dssp             ECCSCSEEEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCC-------EECSTTTTTTCTTCCEE
T ss_pred             ECCCCccccChhhcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcC-------CccchhhcccCcCCCEE
Confidence            99999999999889999999999999954 444443 3378899999999999987       55666778889999999


Q ss_pred             EEEecCCCC--CCcccccCCccEEEEEEcCcccccccCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccchhh
Q 037732          241 ELQIQDVNT--FPRGLFLEKLETFKILIGGVWGWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNY  318 (350)
Q Consensus       241 ~l~~~~~~~--l~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~  318 (350)
                      ++++|.+..  +|.                   .+..+++|+.|++++|.....+......+++|+.|++++|.++++  
T Consensus       156 ~l~~n~l~~~~~~~-------------------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--  214 (306)
T 2z66_A          156 KMAGNSFQENFLPD-------------------IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL--  214 (306)
T ss_dssp             ECTTCEEGGGEECS-------------------CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBC--
T ss_pred             ECCCCccccccchh-------------------HHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCcc--
Confidence            999987654  333                   345677888888888777666333233469999999999999884  


Q ss_pred             hhhhhcccCcCcceEEEEeCccceeccCC
Q 037732          319 FVNELVKVGPSQLKHLYIRGSHLTLNPAE  347 (350)
Q Consensus       319 ~~~~l~~~~~~~L~~L~l~~~~~~~~p~~  347 (350)
                      .+..+  ..+++|+.|++++|+++..++.
T Consensus       215 ~~~~~--~~l~~L~~L~L~~N~l~~~~~~  241 (306)
T 2z66_A          215 DTFPY--KCLNSLQVLDYSLNHIMTSKKQ  241 (306)
T ss_dssp             CSGGG--TTCTTCCEEECTTSCCCBCSSS
T ss_pred             Chhhc--cCcccCCEeECCCCCCcccCHH
Confidence            23345  6799999999999999987653

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.87  E-value=8.4e-22  Score=191.80  Aligned_cols=258  Identities=17%  Similarity=0.194  Sum_probs=174.9

Q ss_pred             eeecccccccccccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCC-CccccCcccccEEEecCCC
Q 037732           67 FSATEEQTNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSL-PSSLGLLSNLQNLSLYNCK  145 (350)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~~~  145 (350)
                      +...+..+..+|... .+++++|++  +. +....++...+.++++|++|++++|.+..+ |..+.++++|++|++++|.
T Consensus         9 ~~cs~~~L~~ip~~~-~~~l~~L~L--s~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~   84 (680)
T 1ziw_A            9 ADCSHLKLTQVPDDL-PTNITVLNL--TH-NQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE   84 (680)
T ss_dssp             EECCSSCCSSCCSCS-CTTCSEEEC--CS-SCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC
T ss_pred             eECCCCCcccccccc-CCCCcEEEC--CC-CCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc
Confidence            344455677777532 278999999  44 445566666577899999999999998864 6678899999999999999


Q ss_pred             CCC-c-hhhhccCCCcEEEecCCCCcccc-ccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhh
Q 037732          146 LLD-I-TVIRDLKKLAVLCLRGSDIKRLP-VEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVE  222 (350)
Q Consensus       146 l~~-~-~~l~~l~~L~~L~l~~~~~~~lp-~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  222 (350)
                      +.. + ..++.+++|++|++++|.+..++ ..++++++|++|++++|......+.. ++++++|++|++++|.+..    
T Consensus        85 l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~----  159 (680)
T 1ziw_A           85 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGT-QVQLENLQELLLSNNKIQA----  159 (680)
T ss_dssp             CCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCS-SSCCTTCCEEECCSSCCCC----
T ss_pred             cCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchh-hcccccCCEEEccCCcccc----
Confidence            888 4 36899999999999999998777 46899999999999996554444444 7899999999999988743    


Q ss_pred             hccccccchh--hcCCCceeEEEecCCCCCCccc--ccCCccEEE---------------------------EEEcCc--
Q 037732          223 VEGVKNASLH--ELKHLISLELQIQDVNTFPRGL--FLEKLETFK---------------------------ILIGGV--  269 (350)
Q Consensus       223 ~~~~~~~~l~--~l~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~---------------------------l~~~~~--  269 (350)
                         ..+..+.  .+++|+.|++++|.+..++...  .+++|+.+.                           +..+.+  
T Consensus       160 ---~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~  236 (680)
T 1ziw_A          160 ---LKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST  236 (680)
T ss_dssp             ---BCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCE
T ss_pred             ---cCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccc
Confidence               3333333  4578999999999887655432  344444444                           432221  


Q ss_pred             --ccccccCcc--ceEEEEeCCCcccchHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEeCcc
Q 037732          270 --WGWEYADIW--CREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSH  340 (350)
Q Consensus       270 --~~~~~~~~~--L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~  340 (350)
                        +.++..++.  |+.|++++|.....+......+++|+.|++++|.+++.  .+..+  ..+++|+.|++.+|.
T Consensus       237 ~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~--~~l~~L~~L~L~~~~  307 (680)
T 1ziw_A          237 TSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHL--FSHSL--HGLFNVRYLNLKRSF  307 (680)
T ss_dssp             ECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEE--CTTTT--TTCTTCCEEECTTCB
T ss_pred             cChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCcc--Chhhh--cCCCCccEEeccchh
Confidence              123333332  66666666554444322222346666666666666553  34444  556666666666543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.87  E-value=1.6e-21  Score=168.22  Aligned_cols=177  Identities=24%  Similarity=0.338  Sum_probs=90.6

Q ss_pred             CcceEEeecCCcCcCCCc-cccCcccccEEEecCCCCCC-c-hhhhccCCCcEEEecCCCCcccccc-ccCCCCccEEec
Q 037732          111 IQVRVINFSYMNLLSLPS-SLGLLSNLQNLSLYNCKLLD-I-TVIRDLKKLAVLCLRGSDIKRLPVE-VGELTLLRLLDL  186 (350)
Q Consensus       111 ~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~l~~-~-~~l~~l~~L~~L~l~~~~~~~lp~~-l~~l~~L~~L~l  186 (350)
                      ++++.|++++|.+..++. .|..+++|++|++++|.++. + ..+..+++|++|++++|.+..+|.. +..+++|++|++
T Consensus        37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  116 (270)
T 2o6q_A           37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL  116 (270)
T ss_dssp             TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred             CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence            345566666665555433 45555666666666655555 2 2234555566666655555555432 345555555555


Q ss_pred             cCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCCCCCCcccccCCccEEEEEE
Q 037732          187 RDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRGLFLEKLETFKILI  266 (350)
Q Consensus       187 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~  266 (350)
                      ++ +.+..++...++.+++|++|++++|.+.       +..+..++.+++|+.|++++|.+..++..             
T Consensus       117 ~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-------------  175 (270)
T 2o6q_A          117 DR-NQLKSLPPRVFDSLTKLTYLSLGYNELQ-------SLPKGVFDKLTSLKELRLYNNQLKRVPEG-------------  175 (270)
T ss_dssp             CS-SCCCCCCTTTTTTCTTCCEEECCSSCCC-------CCCTTTTTTCTTCCEEECCSSCCSCCCTT-------------
T ss_pred             CC-CccCeeCHHHhCcCcCCCEEECCCCcCC-------ccCHhHccCCcccceeEecCCcCcEeChh-------------
Confidence            55 2233333333455555555555555542       12223345555555555555555444432             


Q ss_pred             cCcccccccCccceEEEEeCCCcccchHHHHHHhcccceeeeccccc
Q 037732          267 GGVWGWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEE  313 (350)
Q Consensus       267 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l  313 (350)
                           .+..+++|+.|++++|....+|......+++|+.|++++|.+
T Consensus       176 -----~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  217 (270)
T 2o6q_A          176 -----AFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW  217 (270)
T ss_dssp             -----TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             -----HhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence                 223445556666655555555443333345666666666543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.87  E-value=1.1e-21  Score=181.72  Aligned_cols=223  Identities=20%  Similarity=0.273  Sum_probs=184.6

Q ss_pred             cceEEeecCCcCcCCCccccCcccccEEEecCCCCCC--chhhhccCCCcEEEecCCCCcccc-ccccCCCCccEEeccC
Q 037732          112 QVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLD--ITVIRDLKKLAVLCLRGSDIKRLP-VEVGELTLLRLLDLRD  188 (350)
Q Consensus       112 ~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~l~~~~~~~lp-~~l~~l~~L~~L~l~~  188 (350)
                      ..+.++.++..+..+|..+.  +++++|++++|.+..  +..+..+++|++|++++|.+..++ ..+.++++|+.|++++
T Consensus        55 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~  132 (452)
T 3zyi_A           55 QFSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD  132 (452)
T ss_dssp             SSCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CCcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence            45678888888888888664  689999999999988  578999999999999999999776 5789999999999999


Q ss_pred             CCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEe-cCCCCCCccc--ccCCccEEEEE
Q 037732          189 CMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQI-QDVNTFPRGL--FLEKLETFKIL  265 (350)
Q Consensus       189 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~l~~~~--~~~~L~~L~l~  265 (350)
                       +.+..++...+.++++|++|++++|.+.       ...+..+.++++|+.|+++. +.+..++...  .+++|++|++.
T Consensus       133 -n~l~~~~~~~~~~l~~L~~L~L~~N~l~-------~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~  204 (452)
T 3zyi_A          133 -NWLTVIPSGAFEYLSKLRELWLRNNPIE-------SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLG  204 (452)
T ss_dssp             -SCCSBCCTTTSSSCTTCCEEECCSCCCC-------EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECT
T ss_pred             -CcCCccChhhhcccCCCCEEECCCCCcc-------eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECC
Confidence             4566777766889999999999999984       33345788999999999998 4566666643  68999999997


Q ss_pred             EcCccc--ccccCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEeCcccee
Q 037732          266 IGGVWG--WEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLTL  343 (350)
Q Consensus       266 ~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~  343 (350)
                      .+.+..  .+..+++|+.|++++|....++...+..+++|+.|++++|.++..  .+..+  ..+++|+.|+|++|.++.
T Consensus       205 ~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~--~~l~~L~~L~L~~N~l~~  280 (452)
T 3zyi_A          205 MCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLI--ERNAF--DGLASLVELNLAHNNLSS  280 (452)
T ss_dssp             TSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEE--CTTTT--TTCTTCCEEECCSSCCSC
T ss_pred             CCcccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceE--CHHHh--cCCCCCCEEECCCCcCCc
Confidence            665433  467889999999999888777544444579999999999999984  45666  789999999999999999


Q ss_pred             ccCCC
Q 037732          344 NPAES  348 (350)
Q Consensus       344 ~p~~~  348 (350)
                      +|+..
T Consensus       281 ~~~~~  285 (452)
T 3zyi_A          281 LPHDL  285 (452)
T ss_dssp             CCTTS
T ss_pred             cChHH
Confidence            98753

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.87  E-value=3.3e-21  Score=178.35  Aligned_cols=176  Identities=18%  Similarity=0.176  Sum_probs=135.7

Q ss_pred             eeeecccccccccccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCC
Q 037732           66 VFSATEEQTNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCK  145 (350)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~  145 (350)
                      .+.+..+.+..++ +..+++|++|++  +.+. ...++   +..+++|++|++++|.++.+|  ++.+++|++|++++|.
T Consensus        68 ~L~Ls~n~l~~~~-~~~l~~L~~L~L--s~N~-l~~~~---~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~  138 (457)
T 3bz5_A           68 KLICTSNNITTLD-LSQNTNLTYLAC--DSNK-LTNLD---VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNT  138 (457)
T ss_dssp             EEECCSSCCSCCC-CTTCTTCSEEEC--CSSC-CSCCC---CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSC
T ss_pred             EEEccCCcCCeEc-cccCCCCCEEEC--cCCC-Cceee---cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCc
Confidence            4555666777765 778889999999  4444 44444   457889999999999888775  7888999999999998


Q ss_pred             CCCchhhhccCCCcEEEecCC-CCccccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhc
Q 037732          146 LLDITVIRDLKKLAVLCLRGS-DIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVE  224 (350)
Q Consensus       146 l~~~~~l~~l~~L~~L~l~~~-~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~  224 (350)
                      ++..+ ++.+++|++|++++| .+..+  .+..+++|+.|++++| .+..+|   ++.+++|+.|++++|.+...     
T Consensus       139 l~~l~-l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n-~l~~l~---l~~l~~L~~L~l~~N~l~~~-----  206 (457)
T 3bz5_A          139 LTEID-VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFN-KITELD---VSQNKLLNRLNCDTNNITKL-----  206 (457)
T ss_dssp             CSCCC-CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSS-CCCCCC---CTTCTTCCEEECCSSCCSCC-----
T ss_pred             cceec-cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCC-ccceec---cccCCCCCEEECcCCcCCee-----
Confidence            88853 778889999999888 55555  4778889999999884 455555   57888999999998887421     


Q ss_pred             cccccchhhcCCCceeEEEecCCCCCCccc-ccCCccEEEEEEcCc
Q 037732          225 GVKNASLHELKHLISLELQIQDVNTFPRGL-FLEKLETFKILIGGV  269 (350)
Q Consensus       225 ~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~  269 (350)
                           .++.+++|+.|++++|.+..+|  + .+++|+.|++..+.+
T Consensus       207 -----~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l  245 (457)
T 3bz5_A          207 -----DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPL  245 (457)
T ss_dssp             -----CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCC
T ss_pred             -----ccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcC
Confidence                 2777889999999999988877  4 678899988865543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.87  E-value=1e-21  Score=181.41  Aligned_cols=223  Identities=20%  Similarity=0.270  Sum_probs=184.5

Q ss_pred             cceEEeecCCcCcCCCccccCcccccEEEecCCCCCC--chhhhccCCCcEEEecCCCCcccc-ccccCCCCccEEeccC
Q 037732          112 QVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLD--ITVIRDLKKLAVLCLRGSDIKRLP-VEVGELTLLRLLDLRD  188 (350)
Q Consensus       112 ~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~l~~~~~~~lp-~~l~~l~~L~~L~l~~  188 (350)
                      ..+.++..+..+..+|..+.  .+++.|++++|.+..  +..+.++++|++|++++|.+..++ ..+.++++|++|++++
T Consensus        44 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~  121 (440)
T 3zyj_A           44 QFSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD  121 (440)
T ss_dssp             TSCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred             CCCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence            45678888888888998765  689999999999988  578999999999999999999776 4688999999999999


Q ss_pred             CCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEec-CCCCCCccc--ccCCccEEEEE
Q 037732          189 CMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQ-DVNTFPRGL--FLEKLETFKIL  265 (350)
Q Consensus       189 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~l~~~~--~~~~L~~L~l~  265 (350)
                       +.+..++...+..+++|++|++++|.+.       ...+..+.++++|+.|+++.| .+..++...  .+++|++|++.
T Consensus       122 -n~l~~~~~~~~~~l~~L~~L~L~~N~i~-------~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~  193 (440)
T 3zyj_A          122 -NRLTTIPNGAFVYLSKLKELWLRNNPIE-------SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLA  193 (440)
T ss_dssp             -SCCSSCCTTTSCSCSSCCEEECCSCCCC-------EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECT
T ss_pred             -CcCCeeCHhHhhccccCceeeCCCCccc-------ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCC
Confidence             4566777755899999999999999984       334457889999999999984 566666543  68999999997


Q ss_pred             EcCccc--ccccCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEeCcccee
Q 037732          266 IGGVWG--WEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLTL  343 (350)
Q Consensus       266 ~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~  343 (350)
                      .+.+..  .+..+++|+.|++++|....++...+..+++|+.|+|++|.++++  .+..+  ..+++|+.|+|++|.++.
T Consensus       194 ~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~--~~l~~L~~L~L~~N~l~~  269 (440)
T 3zyj_A          194 MCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVI--ERNAF--DNLQSLVEINLAHNNLTL  269 (440)
T ss_dssp             TSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE--CTTSS--TTCTTCCEEECTTSCCCC
T ss_pred             CCcCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEE--Chhhh--cCCCCCCEEECCCCCCCc
Confidence            665433  467889999999999988777544444579999999999999984  45556  789999999999999999


Q ss_pred             ccCCC
Q 037732          344 NPAES  348 (350)
Q Consensus       344 ~p~~~  348 (350)
                      +|+..
T Consensus       270 ~~~~~  274 (440)
T 3zyj_A          270 LPHDL  274 (440)
T ss_dssp             CCTTT
T ss_pred             cChhH
Confidence            98753

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.87  E-value=5.3e-21  Score=168.09  Aligned_cols=196  Identities=20%  Similarity=0.295  Sum_probs=107.2

Q ss_pred             cCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCCchhhhccCCCcEEEecCCCCccccccccCCCCccEEeccC
Q 037732          109 RMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRD  188 (350)
Q Consensus       109 ~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~  188 (350)
                      .+++|+.|+++++.+..+| .+..+++|++|++++|.+...+.+..+++|++|++++|.+..++ .+..+++|++|++++
T Consensus        39 ~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~  116 (308)
T 1h6u_A           39 DLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTS  116 (308)
T ss_dssp             HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTT
T ss_pred             HcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCC
Confidence            4555666666666555554 35556666666666666555222556666666666666555554 455566666666665


Q ss_pred             CCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCCCCCCcccccCCccEEEEEEcC
Q 037732          189 CMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRGLFLEKLETFKILIGG  268 (350)
Q Consensus       189 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~  268 (350)
                      |. +..++.  +..+++|++|++++|.+...+        . ++.+++|+.|++++|.+..++. +              
T Consensus       117 n~-l~~~~~--l~~l~~L~~L~l~~n~l~~~~--------~-l~~l~~L~~L~l~~n~l~~~~~-l--------------  169 (308)
T 1h6u_A          117 TQ-ITDVTP--LAGLSNLQVLYLDLNQITNIS--------P-LAGLTNLQYLSIGNAQVSDLTP-L--------------  169 (308)
T ss_dssp             SC-CCCCGG--GTTCTTCCEEECCSSCCCCCG--------G-GGGCTTCCEEECCSSCCCCCGG-G--------------
T ss_pred             CC-CCCchh--hcCCCCCCEEECCCCccCcCc--------c-ccCCCCccEEEccCCcCCCChh-h--------------
Confidence            32 333443  456666666666666552211        1 5556666666666665554433 1              


Q ss_pred             cccccccCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEeCccceeccC
Q 037732          269 VWGWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLTLNPA  346 (350)
Q Consensus       269 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~p~  346 (350)
                           ..+++|+.|++++|....++.  ...+++|+.|++++|.++++   + .+  ..+++|+.|++++|+++..|.
T Consensus       170 -----~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~---~-~l--~~l~~L~~L~l~~N~i~~~~~  234 (308)
T 1h6u_A          170 -----ANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDV---S-PL--ANTSNLFIVTLTNQTITNQPV  234 (308)
T ss_dssp             -----TTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBC---G-GG--TTCTTCCEEEEEEEEEECCCE
T ss_pred             -----cCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcc---c-cc--cCCCCCCEEEccCCeeecCCe
Confidence                 233444555555544444432  22346666666666666663   2 23  556666777776666666543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.86  E-value=6.6e-23  Score=181.11  Aligned_cols=225  Identities=14%  Similarity=0.150  Sum_probs=182.9

Q ss_pred             ccccccChHHHhcCCcceEEeecCCcCcCCC-ccccCcccccEEEecCCCCCCchhhhccCCCcEEEecCCCCccccccc
Q 037732           97 SSSLTIPNKFFERMIQVRVINFSYMNLLSLP-SSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGSDIKRLPVEV  175 (350)
Q Consensus        97 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~l~~~~~~~lp~~l  175 (350)
                      ......+..++..+++|+.|++++|.+..++ ..+..+++|++|++++|.+.....+..+++|++|++++|.+..++.  
T Consensus        20 ~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~~--   97 (317)
T 3o53_A           20 SSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLV--   97 (317)
T ss_dssp             TTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEEE--
T ss_pred             cchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCccccccC--
Confidence            3445556666777889999999999999765 5789999999999999999873348999999999999999887663  


Q ss_pred             cCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCCCCCCcc-c
Q 037732          176 GELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRG-L  254 (350)
Q Consensus       176 ~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~-~  254 (350)
                        .++|++|++++| .+..++.   ..+++|++|++++|.+.       +..+..++.+++|+.|++++|.+..++.. +
T Consensus        98 --~~~L~~L~l~~n-~l~~~~~---~~~~~L~~L~l~~N~l~-------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  164 (317)
T 3o53_A           98 --GPSIETLHAANN-NISRVSC---SRGQGKKNIYLANNKIT-------MLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL  164 (317)
T ss_dssp             --CTTCCEEECCSS-CCSEEEE---CCCSSCEEEECCSSCCC-------SGGGBCTGGGSSEEEEECTTSCCCEEEGGGG
T ss_pred             --CCCcCEEECCCC-ccCCcCc---cccCCCCEEECCCCCCC-------CccchhhhccCCCCEEECCCCCCCcccHHHH
Confidence              489999999994 4555554   34788999999999983       44456788899999999999998876433 3


Q ss_pred             --ccCCccEEEEEEcCcccc--cccCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccchhhhhhhhcccCcCc
Q 037732          255 --FLEKLETFKILIGGVWGW--EYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQ  330 (350)
Q Consensus       255 --~~~~L~~L~l~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~  330 (350)
                        .+++|++|++..+.+...  ...+++|+.|++++|....+|..+. .+++|+.|++++|.++.   +|..+  ..+++
T Consensus       165 ~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~-~l~~L~~L~L~~N~l~~---l~~~~--~~l~~  238 (317)
T 3o53_A          165 AASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQ-SAAGVTWISLRNNKLVL---IEKAL--RFSQN  238 (317)
T ss_dssp             GGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGG-GGTTCSEEECTTSCCCE---ECTTC--CCCTT
T ss_pred             hhccCcCCEEECCCCcCcccccccccccCCEEECCCCcCCcchhhhc-ccCcccEEECcCCcccc---hhhHh--hcCCC
Confidence              368999999976665432  3358899999999998888877755 46999999999999997   67777  78899


Q ss_pred             ceEEEEeCccce
Q 037732          331 LKHLYIRGSHLT  342 (350)
Q Consensus       331 L~~L~l~~~~~~  342 (350)
                      |+.|++++|+++
T Consensus       239 L~~L~l~~N~~~  250 (317)
T 3o53_A          239 LEHFDLRGNGFH  250 (317)
T ss_dssp             CCEEECTTCCCB
T ss_pred             CCEEEccCCCcc
Confidence            999999999998

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.86  E-value=5.5e-22  Score=185.15  Aligned_cols=216  Identities=15%  Similarity=0.085  Sum_probs=116.0

Q ss_pred             CCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCCchhhhccCCCcEEEe
Q 037732           84 PQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCL  163 (350)
Q Consensus        84 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~l  163 (350)
                      ++|++|++  +.+. ...++...+..+++|++|++++|.+...++ +..+++|++|++++|.+..++   ..++|++|++
T Consensus        34 ~~L~~L~L--s~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~---~~~~L~~L~L  106 (487)
T 3oja_A           34 WNVKELDL--SGNP-LSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL---VGPSIETLHA  106 (487)
T ss_dssp             GGCCEEEC--CSSC-CCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEE---ECTTCCEEEC
T ss_pred             CCccEEEe--eCCc-CCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCC---CCCCcCEEEC
Confidence            35666666  3333 333333334456666666666666654333 556666666666666555411   1256666666


Q ss_pred             cCCCCccccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchh-hcCCCceeEE
Q 037732          164 RGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLH-ELKHLISLEL  242 (350)
Q Consensus       164 ~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~-~l~~L~~L~l  242 (350)
                      ++|.+..++..  .+++|+.|++++|......|.. ++++++|++|++++|.+       .+..|..+. .+++|+.|++
T Consensus       107 ~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l-------~~~~~~~l~~~l~~L~~L~L  176 (487)
T 3oja_A          107 ANNNISRVSCS--RGQGKKNIYLANNKITMLRDLD-EGCRSRVQYLDLKLNEI-------DTVNFAELAASSDTLEHLNL  176 (487)
T ss_dssp             CSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBC-GGGGSSEEEEECTTSCC-------CEEEGGGGGGGTTTCCEEEC
T ss_pred             cCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchh-hcCCCCCCEEECCCCCC-------CCcChHHHhhhCCcccEEec
Confidence            66666555432  3456666666663333322323 45566666666666655       233333443 4566666666


Q ss_pred             EecCCCCCCcccccCCccEEEEEEcCcccccccCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccchhhhhhh
Q 037732          243 QIQDVNTFPRGLFLEKLETFKILIGGVWGWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNE  322 (350)
Q Consensus       243 ~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~  322 (350)
                      ++|.+..++....                    +++|+.|++++|....+|..+. .+++|+.|++++|.+++   +|..
T Consensus       177 s~N~l~~~~~~~~--------------------l~~L~~L~Ls~N~l~~~~~~~~-~l~~L~~L~Ls~N~l~~---lp~~  232 (487)
T 3oja_A          177 QYNFIYDVKGQVV--------------------FAKLKTLDLSSNKLAFMGPEFQ-SAAGVTWISLRNNKLVL---IEKA  232 (487)
T ss_dssp             TTSCCCEEECCCC--------------------CTTCCEEECCSSCCCEECGGGG-GGTTCSEEECTTSCCCE---ECTT
T ss_pred             CCCcccccccccc--------------------CCCCCEEECCCCCCCCCCHhHc-CCCCccEEEecCCcCcc---cchh
Confidence            6666555433323                    4555555555555555544433 24566666666666655   4444


Q ss_pred             hcccCcCcceEEEEeCccce
Q 037732          323 LVKVGPSQLKHLYIRGSHLT  342 (350)
Q Consensus       323 l~~~~~~~L~~L~l~~~~~~  342 (350)
                      +  ..+++|+.|++++|++.
T Consensus       233 l--~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          233 L--RFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             C--CCCTTCCEEECTTCCBC
T ss_pred             h--ccCCCCCEEEcCCCCCc
Confidence            4  45566666666666655

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.86  E-value=1.8e-21  Score=168.47  Aligned_cols=133  Identities=22%  Similarity=0.263  Sum_probs=69.9

Q ss_pred             cceEEeecCCcCcCCCc-cccCcccccEEEecCCCCCC--chhhhccCCCcEEEecCCCCcccc-ccccCCCCccEEecc
Q 037732          112 QVRVINFSYMNLLSLPS-SLGLLSNLQNLSLYNCKLLD--ITVIRDLKKLAVLCLRGSDIKRLP-VEVGELTLLRLLDLR  187 (350)
Q Consensus       112 ~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~l~~~~~~~lp-~~l~~l~~L~~L~l~  187 (350)
                      ++++|++++|.+..++. .+..+++|++|++++|.+..  +..+..+++|++|++++|.+..++ ..+.++++|++|+++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  108 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence            45555665555554333 45555566666666655555  234555556666666655555444 345555666666665


Q ss_pred             CCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCCCCCC
Q 037732          188 DCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFP  251 (350)
Q Consensus       188 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~  251 (350)
                      +|. +..++...++++++|++|++++|.+..      ..+|..++++++|+.|++++|.+..++
T Consensus       109 ~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~------~~l~~~~~~l~~L~~L~Ls~N~l~~~~  165 (276)
T 2z62_A          109 ETN-LASLENFPIGHLKTLKELNVAHNLIQS------FKLPEYFSNLTNLEHLDLSSNKIQSIY  165 (276)
T ss_dssp             TSC-CCCSTTCCCTTCTTCCEEECCSSCCCC------CCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred             CCC-ccccCchhcccCCCCCEEECcCCccce------ecCchhhccCCCCCEEECCCCCCCcCC
Confidence            532 222332224555666666666555521      123455555666666666666555443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.85  E-value=9.1e-21  Score=175.29  Aligned_cols=237  Identities=16%  Similarity=0.171  Sum_probs=132.9

Q ss_pred             CCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCCchhhhccCCCcEEEe
Q 037732           84 PQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCL  163 (350)
Q Consensus        84 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~l  163 (350)
                      ++|++|++  +.+. ...+|.  +..+++|++|++++|.++.+|..+   .+|++|++++|.+..++.++.+++|++|++
T Consensus       131 ~~L~~L~L--~~n~-l~~lp~--~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l  202 (454)
T 1jl5_A          131 PLLEYLGV--SNNQ-LEKLPE--LQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELPELQNLPFLTAIYA  202 (454)
T ss_dssp             TTCCEEEC--CSSC-CSSCCC--CTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCCCCTTCTTCCEEEC
T ss_pred             CCCCEEEC--cCCC-CCCCcc--cCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCccccCCCCCCEEEC
Confidence            57888888  4443 445663  567888888888888887776543   478888888888777446777888888888


Q ss_pred             cCCCCccccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhc------------cccccch
Q 037732          164 RGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVE------------GVKNASL  231 (350)
Q Consensus       164 ~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~------------~~~~~~l  231 (350)
                      ++|.+..+|...   ++|+.|++++| .+..+|.  ++.+++|++|++++|.+...+....            ..+|.  
T Consensus       203 ~~N~l~~l~~~~---~~L~~L~l~~n-~l~~lp~--~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~N~l~~l~~--  274 (454)
T 1jl5_A          203 DNNSLKKLPDLP---LSLESIVAGNN-ILEELPE--LQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPE--  274 (454)
T ss_dssp             CSSCCSSCCCCC---TTCCEEECCSS-CCSSCCC--CTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCCCC--
T ss_pred             CCCcCCcCCCCc---CcccEEECcCC-cCCcccc--cCCCCCCCEEECCCCcCCcccccccccCEEECCCCcccccCc--
Confidence            777777666432   46777777774 3445663  5677777777777766643221000            00111  


Q ss_pred             hhcCCCceeEEEecCCCCCCcc---c--------------c-cCCccEEEEEEcCcccccccCccceEEEEeCCCcccch
Q 037732          232 HELKHLISLELQIQDVNTFPRG---L--------------F-LEKLETFKILIGGVWGWEYADIWCREFKIDLDSKIRLK  293 (350)
Q Consensus       232 ~~l~~L~~L~l~~~~~~~l~~~---~--------------~-~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  293 (350)
                       ..++|+.|++++|.+..+|..   +              . .++|++|++..+.+...-..+++|+.|++++|....+|
T Consensus       275 -~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~lp~~~~~L~~L~L~~N~l~~lp  353 (454)
T 1jl5_A          275 -LPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLERLIASFNHLAEVP  353 (454)
T ss_dssp             -CCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCC
T ss_pred             -ccCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCccccccccCCcCCEEECCCCcccccc
Confidence             113455555555544432211   0              0 13455555544443332233466777777776666666


Q ss_pred             HHHHHHhcccceeeeccccccchhhhhhhhcccCc-------------CcceEEEEeCcccee
Q 037732          294 DGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGP-------------SQLKHLYIRGSHLTL  343 (350)
Q Consensus       294 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~-------------~~L~~L~l~~~~~~~  343 (350)
                      .    .+++|+.|++++|.++++..+|..+  ..+             ++|+.|++++|++++
T Consensus       354 ~----~l~~L~~L~L~~N~l~~l~~ip~~l--~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~  410 (454)
T 1jl5_A          354 E----LPQNLKQLHVEYNPLREFPDIPESV--EDLRMNSHLAEVPELPQNLKQLHVETNPLRE  410 (454)
T ss_dssp             C----CCTTCCEEECCSSCCSSCCCCCTTC--CEEECCC------------------------
T ss_pred             c----hhhhccEEECCCCCCCcCCCChHHH--HhhhhcccccccccccCcCCEEECCCCcCCc
Confidence            4    2577777777777777644455555  334             677888888887774

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.85  E-value=1.5e-20  Score=181.30  Aligned_cols=73  Identities=10%  Similarity=-0.121  Sum_probs=55.8

Q ss_pred             cccccCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEeCccceeccCC
Q 037732          271 GWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLTLNPAE  347 (350)
Q Consensus       271 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~p~~  347 (350)
                      ..+..+++|+.|++++|....++...+..+++|+.|+|++|+++++  .+..+  ..+++|+.|++++|+++.+|++
T Consensus       488 ~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l--~~~~~--~~l~~L~~L~Ls~N~l~~~~~~  560 (635)
T 4g8a_A          488 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL--DTFPY--KCLNSLQVLDYSLNHIMTSKKQ  560 (635)
T ss_dssp             SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBC--CCGGG--TTCTTCCEEECTTSCCCBCCSS
T ss_pred             hhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCC--ChhHH--hCCCCCCEEECCCCcCCCCCHH
Confidence            3566778889999988877776544344568899999999988884  34455  6788999999999998888764

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.84  E-value=4.7e-20  Score=170.54  Aligned_cols=171  Identities=19%  Similarity=0.222  Sum_probs=126.5

Q ss_pred             eeecccccccccccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCCC
Q 037732           67 FSATEEQTNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKL  146 (350)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l  146 (350)
                      +.++.+.+..+|..  .++|+.|++  +.+ ....++.    ..++|++|++++|.+..+| .++.+++|++|++++|.+
T Consensus        96 L~l~~n~l~~lp~~--~~~L~~L~l--~~n-~l~~l~~----~~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l  165 (454)
T 1jl5_A           96 LVASCNSLTELPEL--PQSLKSLLV--DNN-NLKALSD----LPPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSL  165 (454)
T ss_dssp             EECCSSCCSSCCCC--CTTCCEEEC--CSS-CCSCCCS----CCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCC
T ss_pred             EEccCCcCCccccc--cCCCcEEEC--CCC-ccCcccC----CCCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcC
Confidence            33444455555542  367888888  443 3344442    1268999999999999988 599999999999999998


Q ss_pred             CC-chhhhccCCCcEEEecCCCCccccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhcc
Q 037732          147 LD-ITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEG  225 (350)
Q Consensus       147 ~~-~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~  225 (350)
                      +. +..   ..+|++|++++|.+..+| .++.+++|++|++++|. +..+|..    .++|++|++++|.+.        
T Consensus       166 ~~lp~~---~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~-l~~l~~~----~~~L~~L~l~~n~l~--------  228 (454)
T 1jl5_A          166 KKLPDL---PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNS-LKKLPDL----PLSLESIVAGNNILE--------  228 (454)
T ss_dssp             SCCCCC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC-CSSCCCC----CTTCCEEECCSSCCS--------
T ss_pred             cccCCC---cccccEEECcCCcCCcCc-cccCCCCCCEEECCCCc-CCcCCCC----cCcccEEECcCCcCC--------
Confidence            88 433   359999999999999988 69999999999999954 4556652    258999999999873        


Q ss_pred             ccccchhhcCCCceeEEEecCCCCCCcccccCCccEEEEEEc
Q 037732          226 VKNASLHELKHLISLELQIQDVNTFPRGLFLEKLETFKILIG  267 (350)
Q Consensus       226 ~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~  267 (350)
                      .+| .++.+++|+.|++++|.+..+|..  .++|++|++..+
T Consensus       229 ~lp-~~~~l~~L~~L~l~~N~l~~l~~~--~~~L~~L~l~~N  267 (454)
T 1jl5_A          229 ELP-ELQNLPFLTTIYADNNLLKTLPDL--PPSLEALNVRDN  267 (454)
T ss_dssp             SCC-CCTTCTTCCEEECCSSCCSSCCSC--CTTCCEEECCSS
T ss_pred             ccc-ccCCCCCCCEEECCCCcCCccccc--ccccCEEECCCC
Confidence            344 377788888888888877766654  355555555443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.84  E-value=2.4e-20  Score=177.92  Aligned_cols=226  Identities=19%  Similarity=0.159  Sum_probs=172.9

Q ss_pred             CCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCCchhhhccCCCcEEEe
Q 037732           84 PQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCL  163 (350)
Q Consensus        84 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~l  163 (350)
                      .+++.|++   .++....+|..++   ++|+.|++++|.++.+|.   .+++|++|++++|.++.++.  .+++|++|++
T Consensus        40 ~~l~~L~l---s~n~L~~lp~~l~---~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~L  108 (622)
T 3g06_A           40 NGNAVLNV---GESGLTTLPDCLP---AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV--LPPGLLELSI  108 (622)
T ss_dssp             HCCCEEEC---CSSCCSCCCSCCC---TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC--CCTTCCEEEE
T ss_pred             CCCcEEEe---cCCCcCccChhhC---CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC--CCCCCCEEEC
Confidence            36889999   4444668887543   799999999999998887   57899999999999988433  7899999999


Q ss_pred             cCCCCccccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhc---------
Q 037732          164 RGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHEL---------  234 (350)
Q Consensus       164 ~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l---------  234 (350)
                      ++|.+..+|.   .+++|+.|++++| .+..+|..    +++|++|++++|.+...+.     .+..+..+         
T Consensus       109 s~N~l~~l~~---~l~~L~~L~L~~N-~l~~lp~~----l~~L~~L~Ls~N~l~~l~~-----~~~~L~~L~L~~N~l~~  175 (622)
T 3g06_A          109 FSNPLTHLPA---LPSGLCKLWIFGN-QLTSLPVL----PPGLQELSVSDNQLASLPA-----LPSELCKLWAYNNQLTS  175 (622)
T ss_dssp             CSCCCCCCCC---CCTTCCEEECCSS-CCSCCCCC----CTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCSC
T ss_pred             cCCcCCCCCC---CCCCcCEEECCCC-CCCcCCCC----CCCCCEEECcCCcCCCcCC-----ccCCCCEEECCCCCCCC
Confidence            9999999987   6789999999984 56667763    4889999999998854321     12222222         


Q ss_pred             -----CCCceeEEEecCCCCCCcccccCCccEEEEEEcCcccccccCccceEEEEeCCCcccchHHHHHHhcccceeeec
Q 037732          235 -----KHLISLELQIQDVNTFPRGLFLEKLETFKILIGGVWGWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLS  309 (350)
Q Consensus       235 -----~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~  309 (350)
                           ++|+.|++++|.+..+|..  .++|+.|.+..+.+...-..+++|+.|++++|....+|    ..+++|+.|+|+
T Consensus       176 l~~~~~~L~~L~Ls~N~l~~l~~~--~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~lp----~~l~~L~~L~Ls  249 (622)
T 3g06_A          176 LPMLPSGLQELSVSDNQLASLPTL--PSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLP----VLPSELKELMVS  249 (622)
T ss_dssp             CCCCCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCC----CCCTTCCEEECC
T ss_pred             CcccCCCCcEEECCCCCCCCCCCc--cchhhEEECcCCcccccCCCCCCCCEEEccCCccCcCC----CCCCcCcEEECC
Confidence                 6777777777777777665  56777777766665544445678888888888777776    235888999999


Q ss_pred             cccccchhhhhhhhcccCcCcceEEEEeCccceeccCC
Q 037732          310 YLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLTLNPAE  347 (350)
Q Consensus       310 ~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~p~~  347 (350)
                      +|.++.   +|.     .+++|+.|++++|.++.+|+.
T Consensus       250 ~N~L~~---lp~-----~~~~L~~L~Ls~N~L~~lp~~  279 (622)
T 3g06_A          250 GNRLTS---LPM-----LPSGLLSLSVYRNQLTRLPES  279 (622)
T ss_dssp             SSCCSC---CCC-----CCTTCCEEECCSSCCCSCCGG
T ss_pred             CCCCCc---CCc-----ccccCcEEeCCCCCCCcCCHH
Confidence            888887   443     468899999999999888763

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.84  E-value=1.6e-20  Score=163.50  Aligned_cols=174  Identities=22%  Similarity=0.308  Sum_probs=125.1

Q ss_pred             eecccccccccccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCC
Q 037732           68 SATEEQTNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLL  147 (350)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~  147 (350)
                      ......+..+|... .++++.|++  +.+. ...++...+..+++|+.|++++|.++.++.. ..+++|++|++++|.+.
T Consensus        16 ~~~~~~l~~ip~~~-~~~l~~L~L--~~N~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N~l~   90 (290)
T 1p9a_G           16 NCDKRNLTALPPDL-PKDTTILHL--SENL-LYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQ   90 (290)
T ss_dssp             ECTTSCCSSCCSCC-CTTCCEEEC--TTSC-CSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSSCCS
T ss_pred             ECCCCCCCcCCCCC-CCCCCEEEc--CCCc-CCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCCcCC
Confidence            34455666666422 267888888  4444 4444444456788888888888888776553 67888888888888887


Q ss_pred             C-chhhhccCCCcEEEecCCCCccccc-cccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhcc
Q 037732          148 D-ITVIRDLKKLAVLCLRGSDIKRLPV-EVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEG  225 (350)
Q Consensus       148 ~-~~~l~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~  225 (350)
                      . +..+..+++|++|++++|.++.+|. .+..+++|++|++++ +.+..++...+..+++|+.|++++|.+..       
T Consensus        91 ~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-------  162 (290)
T 1p9a_G           91 SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLEKLSLANNNLTE-------  162 (290)
T ss_dssp             SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTT-SCCCCCCTTTTTTCTTCCEEECTTSCCSC-------
T ss_pred             cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCC-CCCCccChhhcccccCCCEEECCCCcCCc-------
Confidence            7 6667788888888888888887764 577888888888888 44556666656788888888888887732       


Q ss_pred             ccccchhhcCCCceeEEEecCCCCCCccc
Q 037732          226 VKNASLHELKHLISLELQIQDVNTFPRGL  254 (350)
Q Consensus       226 ~~~~~l~~l~~L~~L~l~~~~~~~l~~~~  254 (350)
                      ..+..+..+++|+.|++++|.+..+|..+
T Consensus       163 l~~~~~~~l~~L~~L~L~~N~l~~ip~~~  191 (290)
T 1p9a_G          163 LPAGLLNGLENLDTLLLQENSLYTIPKGF  191 (290)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             cCHHHhcCcCCCCEEECCCCcCCccChhh
Confidence            22345677888888888888888777764

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.84  E-value=8.7e-21  Score=163.79  Aligned_cols=207  Identities=20%  Similarity=0.225  Sum_probs=147.8

Q ss_pred             cccccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCC-c-hhhh
Q 037732           76 LLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLD-I-TVIR  153 (350)
Q Consensus        76 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~-~-~~l~  153 (350)
                      .......+++++.|.+  . +.....++.  +..+++|++|++++|.+..++ .+..+++|++|++++|.++. + ..+.
T Consensus        33 ~~~~~~~l~~L~~L~l--~-~~~i~~~~~--l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~  106 (272)
T 3rfs_A           33 DAVTQNELNSIDQIIA--N-NSDIKSVQG--IQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFD  106 (272)
T ss_dssp             SEECHHHHTTCCEEEC--T-TSCCCCCTT--GGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred             cccccccccceeeeee--C-CCCcccccc--cccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhc
Confidence            3334456677888888  3 333444443  457888888888888877654 57788888888888888777 3 4467


Q ss_pred             ccCCCcEEEecCCCCcccccc-ccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchh
Q 037732          154 DLKKLAVLCLRGSDIKRLPVE-VGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLH  232 (350)
Q Consensus       154 ~l~~L~~L~l~~~~~~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~  232 (350)
                      .+++|++|++++|.+..++.. +..+++|++|++++| .+..++...++++++|++|++++|.+       .+..+..++
T Consensus       107 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l-------~~~~~~~~~  178 (272)
T 3rfs_A          107 KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQL-------QSLPEGVFD  178 (272)
T ss_dssp             TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC-------CCCCTTTTT
T ss_pred             CCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCCc-------CccCHHHhc
Confidence            788888888888888776654 677888888888874 44556655467788888888888877       333345567


Q ss_pred             hcCCCceeEEEecCCCCCCcccccCCccEEEEEEcCcccccccCccceEEEEeCCCcccchHHHHHHhcccceeeecccc
Q 037732          233 ELKHLISLELQIQDVNTFPRGLFLEKLETFKILIGGVWGWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLE  312 (350)
Q Consensus       233 ~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~  312 (350)
                      .+++|+.|++++|.+..++..                  .++.+++|+.|++++|....       .+++|+.|++..|.
T Consensus       179 ~l~~L~~L~L~~N~l~~~~~~------------------~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~  233 (272)
T 3rfs_A          179 KLTQLKDLRLYQNQLKSVPDG------------------VFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINK  233 (272)
T ss_dssp             TCTTCCEEECCSSCCSCCCTT------------------TTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHH
T ss_pred             CCccCCEEECCCCcCCccCHH------------------HHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHh
Confidence            778888888888877766554                  34567788888888875432       25788999999988


Q ss_pred             ccchhhhhhhh
Q 037732          313 EQDVNYFVNEL  323 (350)
Q Consensus       313 l~~~~~~~~~l  323 (350)
                      +++.  +|..+
T Consensus       234 ~~g~--ip~~~  242 (272)
T 3rfs_A          234 HSGV--VRNSA  242 (272)
T ss_dssp             TGGG--BBCTT
T ss_pred             CCCc--ccCcc
Confidence            8874  77766

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.84  E-value=6.7e-21  Score=164.52  Aligned_cols=198  Identities=20%  Similarity=0.311  Sum_probs=149.8

Q ss_pred             hcCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCCchhhhccCCCcEEEecCCCCcccccc-ccCCCCccEEec
Q 037732          108 ERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGSDIKRLPVE-VGELTLLRLLDL  186 (350)
Q Consensus       108 ~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~l~~~~~~~lp~~-l~~l~~L~~L~l  186 (350)
                      ..+++|+.|+++++.+..++. +..+++|++|++++|.+..++.+..+++|++|++++|.+..++.. +..+++|++|++
T Consensus        38 ~~l~~L~~L~l~~~~i~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  116 (272)
T 3rfs_A           38 NELNSIDQIIANNSDIKSVQG-IQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL  116 (272)
T ss_dssp             HHHTTCCEEECTTSCCCCCTT-GGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             ccccceeeeeeCCCCcccccc-cccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence            467888888888888776654 778888899999888888877788888888888888888877654 678888888888


Q ss_pred             cCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCCCCCCcccccCCccEEEEEE
Q 037732          187 RDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRGLFLEKLETFKILI  266 (350)
Q Consensus       187 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~  266 (350)
                      ++|. +..++...++++++|++|++++|.+       .+..+..++.+++|+.|++++|.+..++..             
T Consensus       117 ~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l-------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-------------  175 (272)
T 3rfs_A          117 VENQ-LQSLPDGVFDKLTNLTYLNLAHNQL-------QSLPKGVFDKLTNLTELDLSYNQLQSLPEG-------------  175 (272)
T ss_dssp             TTSC-CCCCCTTTTTTCTTCCEEECCSSCC-------CCCCTTTTTTCTTCCEEECCSSCCCCCCTT-------------
T ss_pred             CCCc-CCccCHHHhccCCCCCEEECCCCcc-------CccCHHHhccCccCCEEECCCCCcCccCHH-------------
Confidence            8844 4555655467888888888888877       333345567888888888888887776654             


Q ss_pred             cCcccccccCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEeCcccee
Q 037732          267 GGVWGWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLTL  343 (350)
Q Consensus       267 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~  343 (350)
                           .++.+++|+.|++++|.....+......+++|+.|++++|.+..           .+|+|+.|+++.|.+++
T Consensus       176 -----~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-----------~~~~l~~l~~~~n~~~g  236 (272)
T 3rfs_A          176 -----VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-----------TCPGIRYLSEWINKHSG  236 (272)
T ss_dssp             -----TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-----------CTTTTHHHHHHHHHTGG
T ss_pred             -----HhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-----------cCcHHHHHHHHHHhCCC
Confidence                 23467788888888877777665544456889999998887654           35677777777777764

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.83  E-value=4.4e-20  Score=159.75  Aligned_cols=213  Identities=19%  Similarity=0.292  Sum_probs=158.1

Q ss_pred             ccccccccccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCc-cccCcccccEEEecCCCCCC-
Q 037732           71 EEQTNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPS-SLGLLSNLQNLSLYNCKLLD-  148 (350)
Q Consensus        71 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~l~~-  148 (350)
                      +..+..+|... .+++++|++  +.+ ....++...+.++++|++|++++|.+..++. .+..+++|++|++++|.+.. 
T Consensus        16 ~~~l~~ip~~l-~~~l~~L~l--s~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~   91 (276)
T 2z62_A           16 ELNFYKIPDNL-PFSTKNLDL--SFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL   91 (276)
T ss_dssp             TSCCSSCCSSS-CTTCCEEEC--TTC-CCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred             CCCccccCCCC-CCCccEEEC--CCC-cccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCcc
Confidence            34555666522 257999999  444 4555555446789999999999999987554 78999999999999999988 


Q ss_pred             -chhhhccCCCcEEEecCCCCccccc-cccCCCCccEEeccCCCCCC-ccCcchhCCCCCCcEEEcCCCCCCcchhhhcc
Q 037732          149 -ITVIRDLKKLAVLCLRGSDIKRLPV-EVGELTLLRLLDLRDCMELE-VIPPNILSNLSHLEELYMGPRSFDKWEVEVEG  225 (350)
Q Consensus       149 -~~~l~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~  225 (350)
                       +..+..+++|++|++++|.+..++. .+..+++|++|++++|.... .+|.. ++++++|++|++++|.+..       
T Consensus        92 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~-------  163 (276)
T 2z62_A           92 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQS-------  163 (276)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCSSCCCE-------
T ss_pred             ChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchh-hccCCCCCEEECCCCCCCc-------
Confidence             4778999999999999999987776 68999999999999955433 25666 7999999999999999843       


Q ss_pred             ccccchhhcCCCc----eeEEEecCCCCCCcccccCCccEEEEEEcCcccccccCccceEEEEeCCCcccchHHHHHHhc
Q 037732          226 VKNASLHELKHLI----SLELQIQDVNTFPRGLFLEKLETFKILIGGVWGWEYADIWCREFKIDLDSKIRLKDGLILKLE  301 (350)
Q Consensus       226 ~~~~~l~~l~~L~----~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  301 (350)
                      ..+..+..+++++    .|++++|.+..++....                   ...+|+.|++++|....+|......++
T Consensus       164 ~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~-------------------~~~~L~~L~L~~n~l~~~~~~~~~~l~  224 (276)
T 2z62_A          164 IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-------------------KEIRLKELALDTNQLKSVPDGIFDRLT  224 (276)
T ss_dssp             ECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSS-------------------CSCCEEEEECCSSCCSCCCTTTTTTCC
T ss_pred             CCHHHhhhhhhccccceeeecCCCcccccCcccc-------------------CCCcccEEECCCCceeecCHhHhcccc
Confidence            3345566666666    88999998887766531                   122466666666555555544434456


Q ss_pred             ccceeeecccccc
Q 037732          302 GIEDLWLSYLEEQ  314 (350)
Q Consensus       302 ~L~~L~L~~n~l~  314 (350)
                      +|+.|++++|.++
T Consensus       225 ~L~~L~l~~N~~~  237 (276)
T 2z62_A          225 SLQKIWLHTNPWD  237 (276)
T ss_dssp             SCCEEECCSSCBC
T ss_pred             cccEEEccCCccc
Confidence            6666777666554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.82  E-value=1.6e-19  Score=155.74  Aligned_cols=158  Identities=27%  Similarity=0.402  Sum_probs=78.9

Q ss_pred             CCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCcc-ccCcccccEEEecCCCCCC-c-hhhhccCCCcE
Q 037732           84 PQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSS-LGLLSNLQNLSLYNCKLLD-I-TVIRDLKKLAV  160 (350)
Q Consensus        84 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-l~~l~~L~~L~l~~~~l~~-~-~~l~~l~~L~~  160 (350)
                      ++++.|++  +. +....++...+..+++|++|++++|.+..+|.. |..+++|++|++++|.+.. + ..+..+++|++
T Consensus        37 ~~l~~L~l--~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  113 (270)
T 2o6q_A           37 ADTKKLDL--QS-NKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAE  113 (270)
T ss_dssp             TTCSEEEC--CS-SCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCE
T ss_pred             CCCCEEEC--cC-CCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCE
Confidence            34555555  22 223333333344555555555555555554443 3455555555555555554 2 33455555555


Q ss_pred             EEecCCCCccccc-cccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCce
Q 037732          161 LCLRGSDIKRLPV-EVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLIS  239 (350)
Q Consensus       161 L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~  239 (350)
                      |++++|.+..++. .+..+++|++|++++| .+..++...+..+++|++|++++|.+.       +..+..+.++++|+.
T Consensus       114 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~-------~~~~~~~~~l~~L~~  185 (270)
T 2o6q_A          114 LRLDRNQLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYNNQLK-------RVPEGAFDKLTELKT  185 (270)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCS-------CCCTTTTTTCTTCCE
T ss_pred             EECCCCccCeeCHHHhCcCcCCCEEECCCC-cCCccCHhHccCCcccceeEecCCcCc-------EeChhHhccCCCcCE
Confidence            5555555554443 2455555555555552 333444433455555555555555542       222233455555555


Q ss_pred             eEEEecCCCCCCc
Q 037732          240 LELQIQDVNTFPR  252 (350)
Q Consensus       240 L~l~~~~~~~l~~  252 (350)
                      |++++|.+..+|.
T Consensus       186 L~L~~N~l~~~~~  198 (270)
T 2o6q_A          186 LKLDNNQLKRVPE  198 (270)
T ss_dssp             EECCSSCCSCCCT
T ss_pred             EECCCCcCCcCCH
Confidence            5555555554444

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.82  E-value=1.1e-19  Score=159.68  Aligned_cols=173  Identities=18%  Similarity=0.226  Sum_probs=136.0

Q ss_pred             cccccccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCCchhhh
Q 037732           74 TNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIR  153 (350)
Q Consensus        74 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~~l~  153 (350)
                      +........+++|++|++  +. .....++.  +..+++|+.|++++|.+..++. +..+++|++|++++|.+..++.+.
T Consensus        31 ~~~~~~~~~l~~L~~L~l--~~-~~i~~l~~--~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~  104 (308)
T 1h6u_A           31 VTDTVTQADLDGITTLSA--FG-TGVTTIEG--VQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVSAIA  104 (308)
T ss_dssp             TTSEECHHHHHTCCEEEC--TT-SCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCGGGT
T ss_pred             cCceecHHHcCCcCEEEe--eC-CCccCchh--hhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCchhhc
Confidence            333334456789999999  44 44555663  5689999999999999988877 899999999999999998877899


Q ss_pred             ccCCCcEEEecCCCCccccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhh
Q 037732          154 DLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHE  233 (350)
Q Consensus       154 ~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~  233 (350)
                      .+++|++|++++|.+..++. +..+++|++|++++| .+..++.  ++.+++|++|++++|.+..        ++. +..
T Consensus       105 ~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~~--------~~~-l~~  171 (308)
T 1h6u_A          105 GLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLN-QITNISP--LAGLTNLQYLSIGNAQVSD--------LTP-LAN  171 (308)
T ss_dssp             TCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG--GGGCTTCCEEECCSSCCCC--------CGG-GTT
T ss_pred             CCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCC-ccCcCcc--ccCCCCccEEEccCCcCCC--------Chh-hcC
Confidence            99999999999999998874 889999999999994 4555665  6889999999999998743        222 888


Q ss_pred             cCCCceeEEEecCCCCCCcccccCCccEEEEE
Q 037732          234 LKHLISLELQIQDVNTFPRGLFLEKLETFKIL  265 (350)
Q Consensus       234 l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~  265 (350)
                      +++|+.|++++|.+..++....+++|++|++.
T Consensus       172 l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~  203 (308)
T 1h6u_A          172 LSKLTTLKADDNKISDISPLASLPNLIEVHLK  203 (308)
T ss_dssp             CTTCCEEECCSSCCCCCGGGGGCTTCCEEECT
T ss_pred             CCCCCEEECCCCccCcChhhcCCCCCCEEEcc
Confidence            99999999999998877652234444444443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.82  E-value=2.8e-20  Score=163.89  Aligned_cols=220  Identities=16%  Similarity=0.147  Sum_probs=161.4

Q ss_pred             ccEEEecccCCcc-ccccChHHH------hcCCcceEEeecCCcCc-CCCccc--cCcccccEEEecCCCCCC-chhhhc
Q 037732           86 LELLFICADKESS-SLTIPNKFF------ERMIQVRVINFSYMNLL-SLPSSL--GLLSNLQNLSLYNCKLLD-ITVIRD  154 (350)
Q Consensus        86 L~~L~l~~~~~~~-~~~~~~~~~------~~l~~L~~L~l~~~~~~-~lp~~l--~~l~~L~~L~l~~~~l~~-~~~l~~  154 (350)
                      ++.|++  +.+.. ...++..+.      ..+++|++|++++|.+. ..|..+  ..+++|++|++++|.+.. +..++.
T Consensus        65 L~~L~L--~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  142 (312)
T 1wwl_A           65 IKSLSL--KRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAE  142 (312)
T ss_dssp             HHHCCC--CEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHH
T ss_pred             Hhhccc--ccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHH
Confidence            667777  33333 223454332      15889999999999888 477765  788999999999998887 667777


Q ss_pred             c-----CCCcEEEecCCCCcccc-ccccCCCCccEEeccCCCCCCc--cCcc-hhCCCCCCcEEEcCCCCCCcchhhhcc
Q 037732          155 L-----KKLAVLCLRGSDIKRLP-VEVGELTLLRLLDLRDCMELEV--IPPN-ILSNLSHLEELYMGPRSFDKWEVEVEG  225 (350)
Q Consensus       155 l-----~~L~~L~l~~~~~~~lp-~~l~~l~~L~~L~l~~~~~~~~--~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~  225 (350)
                      +     ++|++|++++|.+..++ ..++.+++|++|++++|...+.  ++.. .++++++|++|++++|.+...+.    
T Consensus       143 l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----  218 (312)
T 1wwl_A          143 LQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSG----  218 (312)
T ss_dssp             HHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHH----
T ss_pred             HHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHH----
Confidence            6     88999999999888776 5788899999999998654443  2322 12788899999999888853221    


Q ss_pred             ccccchhhcCCCceeEEEecCCCCCC--ccc-ccCCccEEEEEEcCcc---cccccCccceEEEEeCCCcccchHHHHHH
Q 037732          226 VKNASLHELKHLISLELQIQDVNTFP--RGL-FLEKLETFKILIGGVW---GWEYADIWCREFKIDLDSKIRLKDGLILK  299 (350)
Q Consensus       226 ~~~~~l~~l~~L~~L~l~~~~~~~l~--~~~-~~~~L~~L~l~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  299 (350)
                      .....+..+++|+.|++++|.+...+  ... .+++|++|++..+.+.   ..+.  ++|+.|++++|.....|. + ..
T Consensus       219 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~p~-~-~~  294 (312)
T 1wwl_A          219 VCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRNPS-P-DE  294 (312)
T ss_dssp             HHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSCCC-T-TT
T ss_pred             HHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCChh-H-hh
Confidence            11233456789999999999887654  222 4688999998766543   3333  789999999998888875 3 45


Q ss_pred             hcccceeeeccccccc
Q 037732          300 LEGIEDLWLSYLEEQD  315 (350)
Q Consensus       300 ~~~L~~L~L~~n~l~~  315 (350)
                      +++|+.|++++|.+++
T Consensus       295 l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          295 LPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             SCEEEEEECTTCTTTC
T ss_pred             CCCCCEEeccCCCCCC
Confidence            7999999999999876

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.81  E-value=2.6e-20  Score=173.86  Aligned_cols=200  Identities=14%  Similarity=0.143  Sum_probs=161.0

Q ss_pred             CCcceEEeecCCcCcCC-CccccCcccccEEEecCCCCCCchhhhccCCCcEEEecCCCCccccccccCCCCccEEeccC
Q 037732          110 MIQVRVINFSYMNLLSL-PSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRD  188 (350)
Q Consensus       110 l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~  188 (350)
                      +++|+.|++++|.+..+ |..|..+++|++|++++|.+.....++.+++|++|++++|.+..+|.    .++|++|++++
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L~~  108 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLV----GPSIETLHAAN  108 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEE----CTTCCEEECCS
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCC----CCCcCEEECcC
Confidence            34899999999999975 46899999999999999999873338999999999999999887764    38999999999


Q ss_pred             CCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCCCCCCcccccCCccEEEEEEcC
Q 037732          189 CMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRGLFLEKLETFKILIGG  268 (350)
Q Consensus       189 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~  268 (350)
                      |. +..++.   ..+++|++|++++|.+       .+..+..++.+++|+.|++++|.+..++...              
T Consensus       109 N~-l~~~~~---~~l~~L~~L~L~~N~l-------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~--------------  163 (487)
T 3oja_A          109 NN-ISRVSC---SRGQGKKNIYLANNKI-------TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE--------------  163 (487)
T ss_dssp             SC-CCCEEE---CCCSSCEEEECCSSCC-------CSGGGBCGGGGSSEEEEECTTSCCCEEEGGG--------------
T ss_pred             Cc-CCCCCc---cccCCCCEEECCCCCC-------CCCCchhhcCCCCCCEEECCCCCCCCcChHH--------------
Confidence            54 444454   3568899999999998       4555677889999999999999887643221              


Q ss_pred             cccccccCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEeCccceeccCCC
Q 037732          269 VWGWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLTLNPAES  348 (350)
Q Consensus       269 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~p~~~  348 (350)
                         +...+++|+.|++++|.....+...  .+++|+.|+|++|.+++   +|..+  ..+++|+.|++++|.++.+|+..
T Consensus       164 ---l~~~l~~L~~L~Ls~N~l~~~~~~~--~l~~L~~L~Ls~N~l~~---~~~~~--~~l~~L~~L~Ls~N~l~~lp~~l  233 (487)
T 3oja_A          164 ---LAASSDTLEHLNLQYNFIYDVKGQV--VFAKLKTLDLSSNKLAF---MGPEF--QSAAGVTWISLRNNKLVLIEKAL  233 (487)
T ss_dssp             ---GGGGTTTCCEEECTTSCCCEEECCC--CCTTCCEEECCSSCCCE---ECGGG--GGGTTCSEEECTTSCCCEECTTC
T ss_pred             ---HhhhCCcccEEecCCCccccccccc--cCCCCCEEECCCCCCCC---CCHhH--cCCCCccEEEecCCcCcccchhh
Confidence               1225677888888887766655332  36999999999999998   66667  78999999999999999999754

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.81  E-value=9.4e-20  Score=160.37  Aligned_cols=205  Identities=13%  Similarity=0.063  Sum_probs=157.2

Q ss_pred             cCCcceEEeecCCcCcC-CCccc--cCcccccEEEecCCCCCC--c----hhhhccCCCcEEEecCCCCcccc-ccccCC
Q 037732          109 RMIQVRVINFSYMNLLS-LPSSL--GLLSNLQNLSLYNCKLLD--I----TVIRDLKKLAVLCLRGSDIKRLP-VEVGEL  178 (350)
Q Consensus       109 ~l~~L~~L~l~~~~~~~-lp~~l--~~l~~L~~L~l~~~~l~~--~----~~l~~l~~L~~L~l~~~~~~~lp-~~l~~l  178 (350)
                      .+++|+.|++++|.+.. .|..+  ..+++|++|++++|.+..  +    ..+..+++|++|++++|.+..++ ..+..+
T Consensus        89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l  168 (310)
T 4glp_A           89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF  168 (310)
T ss_dssp             HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred             ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence            45779999999999884 66666  889999999999999876  2    33456899999999999998666 468899


Q ss_pred             CCccEEeccCCCCCCc--cC-cchhCCCCCCcEEEcCCCCCCcchhhhcccccc-chhhcCCCceeEEEecCCCCC-Ccc
Q 037732          179 TLLRLLDLRDCMELEV--IP-PNILSNLSHLEELYMGPRSFDKWEVEVEGVKNA-SLHELKHLISLELQIQDVNTF-PRG  253 (350)
Q Consensus       179 ~~L~~L~l~~~~~~~~--~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~l-~~~  253 (350)
                      ++|++|++++|...+.  ++ ...++.+++|++|++++|.+...+.     .+. .++.+++|+.|++++|.+... |..
T Consensus       169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~-----~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~  243 (310)
T 4glp_A          169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTG-----VCAALAAAGVQPHSLDLSHNSLRATVNPS  243 (310)
T ss_dssp             TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHH-----HHHHHHHHTCCCSSEECTTSCCCCCCCSC
T ss_pred             CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHH-----HHHHHHhcCCCCCEEECCCCCCCccchhh
Confidence            9999999999654431  22 2214678999999999998854322     122 257889999999999998876 554


Q ss_pred             cccCCccEEEEEEcCcccccccCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceE
Q 037732          254 LFLEKLETFKILIGGVWGWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKH  333 (350)
Q Consensus       254 ~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~  333 (350)
                      +.                .+..+++|++|++++|....+|..+   +++|+.|+|++|.++++   |. +  ..+++|+.
T Consensus       244 ~~----------------~~~~~~~L~~L~Ls~N~l~~lp~~~---~~~L~~L~Ls~N~l~~~---~~-~--~~l~~L~~  298 (310)
T 4glp_A          244 AP----------------RCMWSSALNSLNLSFAGLEQVPKGL---PAKLRVLDLSSNRLNRA---PQ-P--DELPEVDN  298 (310)
T ss_dssp             CS----------------SCCCCTTCCCEECCSSCCCSCCSCC---CSCCSCEECCSCCCCSC---CC-T--TSCCCCSC
T ss_pred             HH----------------hccCcCcCCEEECCCCCCCchhhhh---cCCCCEEECCCCcCCCC---ch-h--hhCCCccE
Confidence            31                1122368888999888888887654   37999999999999983   33 4  67899999


Q ss_pred             EEEeCcccee
Q 037732          334 LYIRGSHLTL  343 (350)
Q Consensus       334 L~l~~~~~~~  343 (350)
                      |++++|+++.
T Consensus       299 L~L~~N~l~~  308 (310)
T 4glp_A          299 LTLDGNPFLV  308 (310)
T ss_dssp             EECSSTTTSC
T ss_pred             EECcCCCCCC
Confidence            9999999875

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.80  E-value=8e-20  Score=154.66  Aligned_cols=202  Identities=15%  Similarity=0.183  Sum_probs=151.5

Q ss_pred             ccccChHHHhcCCcceEEeecCCcCcCCCc-cccCcccccEEEecCCC-CCC-c-hhhhccCCCcEEEecC-CCCccccc
Q 037732           99 SLTIPNKFFERMIQVRVINFSYMNLLSLPS-SLGLLSNLQNLSLYNCK-LLD-I-TVIRDLKKLAVLCLRG-SDIKRLPV  173 (350)
Q Consensus        99 ~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~-l~~-~-~~l~~l~~L~~L~l~~-~~~~~lp~  173 (350)
                      ...+|. +   ..+++.|++++|.++.+|. .|..+++|++|++++|. ++. + ..+..+++|++|++++ |.+..+|.
T Consensus        23 l~~ip~-~---~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~   98 (239)
T 2xwt_C           23 IQRIPS-L---PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP   98 (239)
T ss_dssp             CSSCCC-C---CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred             ccccCC-C---CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence            556665 2   3478899999988887665 67888899999999886 776 3 4678888999999987 78887774


Q ss_pred             -cccCCCCccEEeccCCCCCCccCcchhCCCCCCc---EEEcCCC-CCCcchhhhccccccchhhcCCCc-eeEEEecCC
Q 037732          174 -EVGELTLLRLLDLRDCMELEVIPPNILSNLSHLE---ELYMGPR-SFDKWEVEVEGVKNASLHELKHLI-SLELQIQDV  247 (350)
Q Consensus       174 -~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~---~L~l~~~-~~~~~~~~~~~~~~~~l~~l~~L~-~L~l~~~~~  247 (350)
                       .+..+++|++|++++| .+..+|.  +..+++|+   +|++++| .+.       +..+..+.++++|+ .|++++|.+
T Consensus        99 ~~f~~l~~L~~L~l~~n-~l~~lp~--~~~l~~L~~L~~L~l~~N~~l~-------~i~~~~~~~l~~L~~~L~l~~n~l  168 (239)
T 2xwt_C           99 DALKELPLLKFLGIFNT-GLKMFPD--LTKVYSTDIFFILEITDNPYMT-------SIPVNAFQGLCNETLTLKLYNNGF  168 (239)
T ss_dssp             TSEECCTTCCEEEEEEE-CCCSCCC--CTTCCBCCSEEEEEEESCTTCC-------EECTTTTTTTBSSEEEEECCSCCC
T ss_pred             HHhCCCCCCCEEeCCCC-CCccccc--cccccccccccEEECCCCcchh-------hcCcccccchhcceeEEEcCCCCC
Confidence             5778888999998884 4555665  67777777   8888888 663       23334577888888 888888887


Q ss_pred             CCCCcccccCCccEEEEEEcCcccccccCccceEEEEeCCC-cccchHHHHHHh-cccceeeeccccccchhhhhhhhcc
Q 037732          248 NTFPRGLFLEKLETFKILIGGVWGWEYADIWCREFKIDLDS-KIRLKDGLILKL-EGIEDLWLSYLEEQDVNYFVNELVK  325 (350)
Q Consensus       248 ~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~l~~  325 (350)
                      ..+|...                  +.. ++|+.|++++|. ...++...+..+ ++|+.|++++|.++.   +|.    
T Consensus       169 ~~i~~~~------------------~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~---l~~----  222 (239)
T 2xwt_C          169 TSVQGYA------------------FNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA---LPS----  222 (239)
T ss_dssp             CEECTTT------------------TTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC---CCC----
T ss_pred             cccCHhh------------------cCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc---CCh----
Confidence            7766652                  223 678888888884 777765555556 899999999999987   443    


Q ss_pred             cCcCcceEEEEeCcc
Q 037732          326 VGPSQLKHLYIRGSH  340 (350)
Q Consensus       326 ~~~~~L~~L~l~~~~  340 (350)
                      ..+++|+.|++.++.
T Consensus       223 ~~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          223 KGLEHLKELIARNTW  237 (239)
T ss_dssp             TTCTTCSEEECTTC-
T ss_pred             hHhccCceeeccCcc
Confidence            357899999998764

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.80  E-value=1.9e-19  Score=152.31  Aligned_cols=206  Identities=17%  Similarity=0.161  Sum_probs=163.2

Q ss_pred             ccccccccccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCc-CcCCCc-cccCcccccEEEecC-CCCC
Q 037732           71 EEQTNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMN-LLSLPS-SLGLLSNLQNLSLYN-CKLL  147 (350)
Q Consensus        71 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~lp~-~l~~l~~L~~L~l~~-~~l~  147 (350)
                      +..+..+|.  -.+++++|++  +. +....++...+..+++|+.|++++|. ++.++. .|..+++|++|++++ |.++
T Consensus        20 c~~l~~ip~--~~~~l~~L~l--~~-n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~   94 (239)
T 2xwt_C           20 CKDIQRIPS--LPPSTQTLKL--IE-THLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT   94 (239)
T ss_dssp             ECSCSSCCC--CCTTCCEEEE--ES-CCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC
T ss_pred             ccCccccCC--CCCcccEEEE--eC-CcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee
Confidence            444777777  3458999999  44 44666776557789999999999997 887665 789999999999998 8888


Q ss_pred             C--chhhhccCCCcEEEecCCCCccccccccCCCCcc---EEeccCCCCCCccCcchhCCCCCCc-EEEcCCCCCCcchh
Q 037732          148 D--ITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLR---LLDLRDCMELEVIPPNILSNLSHLE-ELYMGPRSFDKWEV  221 (350)
Q Consensus       148 ~--~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~---~L~l~~~~~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~  221 (350)
                      .  +..+..+++|++|++++|.+..+|. +..+++|+   +|++++|..+..++...+.++++|+ +|++++|.+...+.
T Consensus        95 ~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~  173 (239)
T 2xwt_C           95 YIDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQG  173 (239)
T ss_dssp             EECTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECT
T ss_pred             EcCHHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCH
Confidence            8  3578899999999999999999986 88888888   9999996477888876688999999 99999998843321


Q ss_pred             hhccccccchhhcCCCceeEEEecC-CCCCCcccccCCccEEEEEEcCcccccccC-ccceEEEEeCCCcccchHHHHHH
Q 037732          222 EVEGVKNASLHELKHLISLELQIQD-VNTFPRGLFLEKLETFKILIGGVWGWEYAD-IWCREFKIDLDSKIRLKDGLILK  299 (350)
Q Consensus       222 ~~~~~~~~~l~~l~~L~~L~l~~~~-~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~  299 (350)
                             ..+.. ++|+.|++++|. +..++..                  .+..+ ++|+.|++++|....+|..   .
T Consensus       174 -------~~~~~-~~L~~L~L~~n~~l~~i~~~------------------~~~~l~~~L~~L~l~~N~l~~l~~~---~  224 (239)
T 2xwt_C          174 -------YAFNG-TKLDAVYLNKNKYLTVIDKD------------------AFGGVYSGPSLLDVSQTSVTALPSK---G  224 (239)
T ss_dssp             -------TTTTT-CEEEEEECTTCTTCCEECTT------------------TTTTCSBCCSEEECTTCCCCCCCCT---T
T ss_pred             -------hhcCC-CCCCEEEcCCCCCcccCCHH------------------HhhccccCCcEEECCCCccccCChh---H
Confidence                   23334 789999999995 8877655                  23455 7788888888877777754   4


Q ss_pred             hcccceeeeccc
Q 037732          300 LEGIEDLWLSYL  311 (350)
Q Consensus       300 ~~~L~~L~L~~n  311 (350)
                      +++|+.|+++++
T Consensus       225 ~~~L~~L~l~~~  236 (239)
T 2xwt_C          225 LEHLKELIARNT  236 (239)
T ss_dssp             CTTCSEEECTTC
T ss_pred             hccCceeeccCc
Confidence            688898888854

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.79  E-value=1.5e-18  Score=147.93  Aligned_cols=176  Identities=20%  Similarity=0.282  Sum_probs=109.9

Q ss_pred             cceEEeecCCcCcCCCccccCcccccEEEecCCCCCC--chhhhccCCCcEEEecCCCCccccc-cccCCCCccEEeccC
Q 037732          112 QVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLD--ITVIRDLKKLAVLCLRGSDIKRLPV-EVGELTLLRLLDLRD  188 (350)
Q Consensus       112 ~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~  188 (350)
                      ..+.++++++.+..+|..+.  ..++.|++++|.+..  +..+..+++|++|++++|.+..++. .+..+++|++|++++
T Consensus        15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~   92 (251)
T 3m19_A           15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN   92 (251)
T ss_dssp             GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence            45566666666666666544  467777777777666  3456667777777777776665544 356677777777776


Q ss_pred             CCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCCCCCCcccccCCccEEEEEEcC
Q 037732          189 CMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRGLFLEKLETFKILIGG  268 (350)
Q Consensus       189 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~  268 (350)
                       +.+..++...+..+++|++|++++|.+.       +..+..+..+++|+.|++++|.+..++..               
T Consensus        93 -n~l~~~~~~~~~~l~~L~~L~L~~N~l~-------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~---------------  149 (251)
T 3m19_A           93 -NQLASLPLGVFDHLTQLDKLYLGGNQLK-------SLPSGVFDRLTKLKELRLNTNQLQSIPAG---------------  149 (251)
T ss_dssp             -SCCCCCCTTTTTTCTTCCEEECCSSCCC-------CCCTTTTTTCTTCCEEECCSSCCCCCCTT---------------
T ss_pred             -CcccccChhHhcccCCCCEEEcCCCcCC-------CcChhHhccCCcccEEECcCCcCCccCHH---------------
Confidence             3344555444566777777777777662       22233456667777777777776666553               


Q ss_pred             cccccccCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccc
Q 037732          269 VWGWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQD  315 (350)
Q Consensus       269 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~  315 (350)
                         .++.+++|+.|++++|....++......+++|+.|++++|.++.
T Consensus       150 ---~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          150 ---AFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC  193 (251)
T ss_dssp             ---TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred             ---HcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence               22344556666666655555544333346788888888887754

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.79  E-value=6.5e-20  Score=166.42  Aligned_cols=192  Identities=16%  Similarity=0.081  Sum_probs=86.6

Q ss_pred             cCcccccEEEecCCCCCC------chhhhccCCCcEEEecCCCCc-----cccccccCC---------CCccEEeccCCC
Q 037732          131 GLLSNLQNLSLYNCKLLD------ITVIRDLKKLAVLCLRGSDIK-----RLPVEVGEL---------TLLRLLDLRDCM  190 (350)
Q Consensus       131 ~~l~~L~~L~l~~~~l~~------~~~l~~l~~L~~L~l~~~~~~-----~lp~~l~~l---------~~L~~L~l~~~~  190 (350)
                      ..+++|++|++++|.+..      +..+..+++|++|++++|.+.     .++..+..+         ++|++|++++|.
T Consensus        91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~  170 (386)
T 2ca6_A           91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR  170 (386)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred             hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence            445555555555555543      134455555555555555554     122222223         555555555533


Q ss_pred             CC-CccCc--chhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCC-----CCCCcccccCCccEE
Q 037732          191 EL-EVIPP--NILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDV-----NTFPRGLFLEKLETF  262 (350)
Q Consensus       191 ~~-~~~~~--~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-----~~l~~~~~~~~L~~L  262 (350)
                      .. ..++.  ..+..+++|++|++++|.+.....  ....+..+..+++|+.|++++|.+     ..+|.          
T Consensus       171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~--~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~----------  238 (386)
T 2ca6_A          171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGI--EHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI----------  238 (386)
T ss_dssp             CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHH--HHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH----------
T ss_pred             CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHH--HHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH----------
Confidence            22 12221  113445555555555554421100  001222445555555555555554     22233          


Q ss_pred             EEEEcCcccccccCccceEEEEeCCCcccc-----hHHHHH-Hhcccceeeeccccccc--hhhhhhhhcccCcCcceEE
Q 037732          263 KILIGGVWGWEYADIWCREFKIDLDSKIRL-----KDGLIL-KLEGIEDLWLSYLEEQD--VNYFVNELVKVGPSQLKHL  334 (350)
Q Consensus       263 ~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~-----~~~~~~-~~~~L~~L~L~~n~l~~--~~~~~~~l~~~~~~~L~~L  334 (350)
                               .+..+++|+.|++++|.....     +.++.. .+++|+.|+|++|.++.  ...++..+. ..+++|+.|
T Consensus       239 ---------~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~-~~l~~L~~L  308 (386)
T 2ca6_A          239 ---------ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVID-EKMPDLLFL  308 (386)
T ss_dssp             ---------HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHH-HHCTTCCEE
T ss_pred             ---------HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHH-hcCCCceEE
Confidence                     344555566666655544332     222211 13556666666666554  111333331 234666666


Q ss_pred             EEeCccceec
Q 037732          335 YIRGSHLTLN  344 (350)
Q Consensus       335 ~l~~~~~~~~  344 (350)
                      ++++|+++..
T Consensus       309 ~l~~N~l~~~  318 (386)
T 2ca6_A          309 ELNGNRFSEE  318 (386)
T ss_dssp             ECTTSBSCTT
T ss_pred             EccCCcCCcc
Confidence            6666665543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.77  E-value=7.1e-20  Score=170.01  Aligned_cols=107  Identities=14%  Similarity=0.024  Sum_probs=56.6

Q ss_pred             cCCCceeEEEecCCCC-----CCccc-ccCCccEEEEEEcCccc----cc-----ccCccceEEEEeCCCccc-----ch
Q 037732          234 LKHLISLELQIQDVNT-----FPRGL-FLEKLETFKILIGGVWG----WE-----YADIWCREFKIDLDSKIR-----LK  293 (350)
Q Consensus       234 l~~L~~L~l~~~~~~~-----l~~~~-~~~~L~~L~l~~~~~~~----~~-----~~~~~L~~L~l~~~~~~~-----~~  293 (350)
                      +++|+.|++++|.+..     ++..+ .+++|++|++..+.+..    .+     ...++|+.|++++|....     ++
T Consensus       255 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~  334 (461)
T 1z7x_W          255 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS  334 (461)
T ss_dssp             TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             CCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHH
Confidence            4556666666665543     33333 35666666665444321    11     122466777776654433     23


Q ss_pred             HHHHHHhcccceeeeccccccch--hhhhhhhcccCcCcceEEEEeCccce
Q 037732          294 DGLILKLEGIEDLWLSYLEEQDV--NYFVNELVKVGPSQLKHLYIRGSHLT  342 (350)
Q Consensus       294 ~~~~~~~~~L~~L~L~~n~l~~~--~~~~~~l~~~~~~~L~~L~l~~~~~~  342 (350)
                      .++.. +++|+.|++++|.+++.  ..+...+. ...++|++|++++|.++
T Consensus       335 ~~l~~-~~~L~~L~Ls~n~i~~~~~~~l~~~l~-~~~~~L~~L~L~~n~i~  383 (461)
T 1z7x_W          335 SVLAQ-NRFLLELQISNNRLEDAGVRELCQGLG-QPGSVLRVLWLADCDVS  383 (461)
T ss_dssp             HHHHH-CSSCCEEECCSSBCHHHHHHHHHHHHT-STTCCCCEEECTTSCCC
T ss_pred             HHHhh-CCCccEEEccCCccccccHHHHHHHHc-CCCCceEEEECCCCCCC
Confidence            33332 47777777777777652  11112221 12567888888887776

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.77  E-value=6.6e-20  Score=170.20  Aligned_cols=259  Identities=18%  Similarity=0.145  Sum_probs=181.9

Q ss_pred             ccCCCCCccEEEecccCCccccccChHHHh----cCCcceEEeecCCcCcC-----CCccccCcccccEEEecCCCCCC-
Q 037732           79 EVVECPQLELLFICADKESSSLTIPNKFFE----RMIQVRVINFSYMNLLS-----LPSSLGLLSNLQNLSLYNCKLLD-  148 (350)
Q Consensus        79 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~----~l~~L~~L~l~~~~~~~-----lp~~l~~l~~L~~L~l~~~~l~~-  148 (350)
                      .+..+++|++|++  +.+......+..+..    ..++|+.|++++|.++.     ++..+..+++|++|++++|.+.. 
T Consensus       108 ~l~~~~~L~~L~L--s~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~  185 (461)
T 1z7x_W          108 TLRTLPTLQELHL--SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEA  185 (461)
T ss_dssp             HTTSCTTCCEEEC--CSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred             HHccCCceeEEEC--CCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchH
Confidence            4457788888888  555433332332222    24578899998888774     35566777899999999988765 


Q ss_pred             -chhhhc-----cCCCcEEEecCCCCcc-----ccccccCCCCccEEeccCCCCCCc----cCcchhCCCCCCcEEEcCC
Q 037732          149 -ITVIRD-----LKKLAVLCLRGSDIKR-----LPVEVGELTLLRLLDLRDCMELEV----IPPNILSNLSHLEELYMGP  213 (350)
Q Consensus       149 -~~~l~~-----l~~L~~L~l~~~~~~~-----lp~~l~~l~~L~~L~l~~~~~~~~----~~~~~l~~l~~L~~L~l~~  213 (350)
                       +..+..     .++|++|++++|.+..     ++..+..+++|++|++++|.....    ++......+++|++|++++
T Consensus       186 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~  265 (461)
T 1z7x_W          186 GVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWE  265 (461)
T ss_dssp             HHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred             HHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcC
Confidence             344432     5689999999998874     567778889999999998643221    2233234688999999999


Q ss_pred             CCCCcchhhhccccccchhhcCCCceeEEEecCCCCC-----Cccc--ccCCccEEEEEEcCcc--------cccccCcc
Q 037732          214 RSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTF-----PRGL--FLEKLETFKILIGGVW--------GWEYADIW  278 (350)
Q Consensus       214 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l-----~~~~--~~~~L~~L~l~~~~~~--------~~~~~~~~  278 (350)
                      |.+....   ...++..+..+++|+.|++++|.+...     ...+  ..++|++|++..+.+.        .++..+++
T Consensus       266 n~l~~~~---~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~  342 (461)
T 1z7x_W          266 CGITAKG---CGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRF  342 (461)
T ss_dssp             SCCCHHH---HHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSS
T ss_pred             CCCCHHH---HHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCC
Confidence            9874322   123567788899999999999987532     1211  1258999999766643        24567799


Q ss_pred             ceEEEEeCCCcccc-hHHHHHH----hcccceeeeccccccc--hhhhhhhhcccCcCcceEEEEeCccceec
Q 037732          279 CREFKIDLDSKIRL-KDGLILK----LEGIEDLWLSYLEEQD--VNYFVNELVKVGPSQLKHLYIRGSHLTLN  344 (350)
Q Consensus       279 L~~L~l~~~~~~~~-~~~~~~~----~~~L~~L~L~~n~l~~--~~~~~~~l~~~~~~~L~~L~l~~~~~~~~  344 (350)
                      |+.|++++|..... +..+...    .++|+.|++++|.+++  ...++..+  ..+++|++|++++|+++..
T Consensus       343 L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l--~~~~~L~~L~l~~N~i~~~  413 (461)
T 1z7x_W          343 LLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATL--LANHSLRELDLSNNCLGDA  413 (461)
T ss_dssp             CCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHH--HHCCCCCEEECCSSSCCHH
T ss_pred             ccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHH--HhCCCccEEECCCCCCCHH
Confidence            99999999866543 2333332    4699999999999984  11367777  6789999999999998753

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.77  E-value=1.1e-18  Score=152.08  Aligned_cols=128  Identities=27%  Similarity=0.380  Sum_probs=73.8

Q ss_pred             cCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCCchhhhccCCCcEEEecCCCCccccccccCCCCccEEeccC
Q 037732          109 RMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRD  188 (350)
Q Consensus       109 ~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~  188 (350)
                      .+++|+.|++++|.+..++. +..+++|++|++++|.+...+.+..+++|++|++++|.+..+| .+..+++|++|++++
T Consensus        44 ~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~  121 (291)
T 1h6t_A           44 ELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSLEH  121 (291)
T ss_dssp             HHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEECTT
T ss_pred             hcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCCh-hhccCCCCCEEECCC
Confidence            45666666666666665543 5666666666666666666323666666666666666666554 356666666666666


Q ss_pred             CCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCCCCC
Q 037732          189 CMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTF  250 (350)
Q Consensus       189 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l  250 (350)
                      | .+..++.  +..+++|++|++++|.+...         ..+..+++|+.|++++|.+..+
T Consensus       122 n-~i~~~~~--l~~l~~L~~L~l~~n~l~~~---------~~l~~l~~L~~L~L~~N~l~~~  171 (291)
T 1h6t_A          122 N-GISDING--LVHLPQLESLYLGNNKITDI---------TVLSRLTKLDTLSLEDNQISDI  171 (291)
T ss_dssp             S-CCCCCGG--GGGCTTCCEEECCSSCCCCC---------GGGGGCTTCSEEECCSSCCCCC
T ss_pred             C-cCCCChh--hcCCCCCCEEEccCCcCCcc---------hhhccCCCCCEEEccCCccccc
Confidence            3 2333332  45566666666666555221         2355555666666666555443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.76  E-value=6.2e-19  Score=155.12  Aligned_cols=201  Identities=16%  Similarity=0.130  Sum_probs=155.0

Q ss_pred             CCCCccEEEecccCCccccccChHHH-hcCCcceEEeecCCcCcC-CC----ccccCcccccEEEecCCCCCC--chhhh
Q 037732           82 ECPQLELLFICADKESSSLTIPNKFF-ERMIQVRVINFSYMNLLS-LP----SSLGLLSNLQNLSLYNCKLLD--ITVIR  153 (350)
Q Consensus        82 ~~~~L~~L~l~~~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~-lp----~~l~~l~~L~~L~l~~~~l~~--~~~l~  153 (350)
                      .+++|++|++  +.+...+..|..++ ..+++|++|++++|.+.. .+    ..+..+++|++|++++|.+..  +..++
T Consensus        89 ~~~~L~~L~l--~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~  166 (310)
T 4glp_A           89 AYSRLKELTL--EDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVR  166 (310)
T ss_dssp             HHSCCCEEEE--ESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCC
T ss_pred             ccCceeEEEe--eCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhc
Confidence            3467999999  67766666776543 689999999999999885 33    344578999999999999987  47888


Q ss_pred             ccCCCcEEEecCCCCcc---cccc--ccCCCCccEEeccCCCCCCccCc---chhCCCCCCcEEEcCCCCCCcchhhhcc
Q 037732          154 DLKKLAVLCLRGSDIKR---LPVE--VGELTLLRLLDLRDCMELEVIPP---NILSNLSHLEELYMGPRSFDKWEVEVEG  225 (350)
Q Consensus       154 ~l~~L~~L~l~~~~~~~---lp~~--l~~l~~L~~L~l~~~~~~~~~~~---~~l~~l~~L~~L~l~~~~~~~~~~~~~~  225 (350)
                      .+++|++|++++|++..   ++..  +..+++|++|++++|. +..++.   ..++++++|++|++++|.+       .+
T Consensus       167 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~l-------~~  238 (310)
T 4glp_A          167 AFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSHNSL-------RA  238 (310)
T ss_dssp             CCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSCC-------CC
T ss_pred             cCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCCC-------Cc
Confidence            99999999999998753   4332  4689999999999954 444443   2357889999999999998       44


Q ss_pred             ccccchhhc---CCCceeEEEecCCCCCCcccccCCccEEEEEEcCcccccccCccceEEEEeCCCcccchHHHHHHhcc
Q 037732          226 VKNASLHEL---KHLISLELQIQDVNTFPRGLFLEKLETFKILIGGVWGWEYADIWCREFKIDLDSKIRLKDGLILKLEG  302 (350)
Q Consensus       226 ~~~~~l~~l---~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  302 (350)
                      ..|..+..+   ++|+.|++++|.+..+|..+                     .++|+.|++++|....+|.  ...+++
T Consensus       239 ~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~---------------------~~~L~~L~Ls~N~l~~~~~--~~~l~~  295 (310)
T 4glp_A          239 TVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL---------------------PAKLRVLDLSSNRLNRAPQ--PDELPE  295 (310)
T ss_dssp             CCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC---------------------CSCCSCEECCSCCCCSCCC--TTSCCC
T ss_pred             cchhhHHhccCcCcCCEEECCCCCCCchhhhh---------------------cCCCCEEECCCCcCCCCch--hhhCCC
Confidence            445556665   69999999999999888763                     2567777777776666553  234689


Q ss_pred             cceeeeccccccc
Q 037732          303 IEDLWLSYLEEQD  315 (350)
Q Consensus       303 L~~L~L~~n~l~~  315 (350)
                      |+.|++++|.+++
T Consensus       296 L~~L~L~~N~l~~  308 (310)
T 4glp_A          296 VDNLTLDGNPFLV  308 (310)
T ss_dssp             CSCEECSSTTTSC
T ss_pred             ccEEECcCCCCCC
Confidence            9999999998875

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.76  E-value=1.5e-19  Score=160.76  Aligned_cols=103  Identities=18%  Similarity=0.133  Sum_probs=44.8

Q ss_pred             CcceEEeecCCcCcCCCccccCcccccEEEecCCCCCC---chhhhccCCCcEEEecCCCCc-cccccccCCCCccEEec
Q 037732          111 IQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLD---ITVIRDLKKLAVLCLRGSDIK-RLPVEVGELTLLRLLDL  186 (350)
Q Consensus       111 ~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~---~~~l~~l~~L~~L~l~~~~~~-~lp~~l~~l~~L~~L~l  186 (350)
                      ++++.|+++++.+...+..+..+++|++|++++|.+..   +..+..+++|++|++++|.+. ..+..+..+++|++|++
T Consensus        70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L  149 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL  149 (336)
T ss_dssp             TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred             ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence            44444444444444333333444445555554444432   233444444555555444443 33334444444555554


Q ss_pred             cCCCCCCc--cCcchhCCCCCCcEEEcCCC
Q 037732          187 RDCMELEV--IPPNILSNLSHLEELYMGPR  214 (350)
Q Consensus       187 ~~~~~~~~--~~~~~l~~l~~L~~L~l~~~  214 (350)
                      ++|..+..  ++.. +.++++|++|++++|
T Consensus       150 ~~~~~l~~~~l~~~-~~~~~~L~~L~l~~~  178 (336)
T 2ast_B          150 SGCSGFSEFALQTL-LSSCSRLDELNLSWC  178 (336)
T ss_dssp             TTCBSCCHHHHHHH-HHHCTTCCEEECCCC
T ss_pred             CCCCCCCHHHHHHH-HhcCCCCCEEcCCCC
Confidence            44422221  2222 344444555554444

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.76  E-value=2.2e-19  Score=162.92  Aligned_cols=238  Identities=14%  Similarity=0.064  Sum_probs=171.5

Q ss_pred             cCCCCCccEEEecccCC---ccccccChHH------HhcCCcceEEeecCCcCcC-----CCccccCcccccEEEecCCC
Q 037732           80 VVECPQLELLFICADKE---SSSLTIPNKF------FERMIQVRVINFSYMNLLS-----LPSSLGLLSNLQNLSLYNCK  145 (350)
Q Consensus        80 ~~~~~~L~~L~l~~~~~---~~~~~~~~~~------~~~l~~L~~L~l~~~~~~~-----lp~~l~~l~~L~~L~l~~~~  145 (350)
                      +..+++|++|++  +.+   ...+.+|..+      +..+++|++|++++|.+..     +|..+..+++|++|++++|.
T Consensus        56 l~~~~~L~~L~L--s~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~  133 (386)
T 2ca6_A           56 IASKKDLEIAEF--SDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG  133 (386)
T ss_dssp             TTTCTTCCEEEC--CSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred             HHhCCCccEEeC--cccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC
Confidence            557899999999  443   2223445443      3578999999999999885     67788899999999999999


Q ss_pred             CCC--chh----hhcc---------CCCcEEEecCCCCc--ccc---ccccCCCCccEEeccCCCCCC-----ccCcchh
Q 037732          146 LLD--ITV----IRDL---------KKLAVLCLRGSDIK--RLP---VEVGELTLLRLLDLRDCMELE-----VIPPNIL  200 (350)
Q Consensus       146 l~~--~~~----l~~l---------~~L~~L~l~~~~~~--~lp---~~l~~l~~L~~L~l~~~~~~~-----~~~~~~l  200 (350)
                      +..  +..    +..+         ++|++|++++|.+.  .+|   ..+..+++|++|++++|....     ..+.. +
T Consensus       134 l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~-l  212 (386)
T 2ca6_A          134 LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEG-L  212 (386)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTT-G
T ss_pred             CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHH-h
Confidence            865  333    4444         89999999999886  455   467789999999999964331     12223 7


Q ss_pred             CCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCCCCCCcccccCCccEEEEEEcCccccc--ccCcc
Q 037732          201 SNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRGLFLEKLETFKILIGGVWGWE--YADIW  278 (350)
Q Consensus       201 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~--~~~~~  278 (350)
                      .++++|++|++++|.+....   ...++..+..+++|+.|++++|.+.......              ++..+  ..+++
T Consensus       213 ~~~~~L~~L~Ls~n~l~~~g---~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~--------------l~~~l~~~~~~~  275 (386)
T 2ca6_A          213 AYCQELKVLDLQDNTFTHLG---SSALAIALKSWPNLRELGLNDCLLSARGAAA--------------VVDAFSKLENIG  275 (386)
T ss_dssp             GGCTTCCEEECCSSCCHHHH---HHHHHHHGGGCTTCCEEECTTCCCCHHHHHH--------------HHHHHHTCSSCC
T ss_pred             hcCCCccEEECcCCCCCcHH---HHHHHHHHccCCCcCEEECCCCCCchhhHHH--------------HHHHHhhccCCC
Confidence            88999999999999873211   2456778899999999999999876431110              01122  23778


Q ss_pred             ceEEEEeCCCccc-----chHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEeC
Q 037732          279 CREFKIDLDSKIR-----LKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRG  338 (350)
Q Consensus       279 L~~L~l~~~~~~~-----~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~  338 (350)
                      |+.|++++|....     +|..+...+++|+.|++++|.+++.......+. ..+++++.+++..
T Consensus       276 L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~-~~l~~~~~~~l~~  339 (386)
T 2ca6_A          276 LQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIR-EVFSTRGRGELDE  339 (386)
T ss_dssp             CCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHH-HHHHHHTCCEECC
T ss_pred             eEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHH-HHhhhcCcchhhh
Confidence            9999999887766     777776667999999999999987422112221 3456666666544

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.75  E-value=8.9e-18  Score=161.81  Aligned_cols=245  Identities=14%  Similarity=-0.010  Sum_probs=181.0

Q ss_pred             CCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCC----chhhhccC
Q 037732           81 VECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLD----ITVIRDLK  156 (350)
Q Consensus        81 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~----~~~l~~l~  156 (350)
                      .....++.|.+  ..+. ...++.   ..+..++.+.+..+.....+. ...++.|++|++++|.+..    +.....+.
T Consensus       325 ~~~~~L~~L~l--~~~~-~~~~~~---~~l~~L~~l~l~~n~~~~~~~-~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~  397 (635)
T 4g8a_A          325 SYNFGWQHLEL--VNCK-FGQFPT---LKLKSLKRLTFTSNKGGNAFS-EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTI  397 (635)
T ss_dssp             GSCCCCSEEEE--ESCE-ESSCCC---CBCTTCCEEEEESCCSCCBCC-CCBCTTCCEEECCSSCCBEEEECCHHHHSCS
T ss_pred             ccchhhhhhhc--cccc-ccCcCc---ccchhhhhcccccccCCCCcc-cccccccccchhhccccccccccccchhhhh
Confidence            34445566666  2222 222222   245566666666665544332 3467888999998887654    45667788


Q ss_pred             CCcEEEecCCCCccccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCC
Q 037732          157 KLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKH  236 (350)
Q Consensus       157 ~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~  236 (350)
                      +|+++++..+....++..+..+++|+.+++..++.....+...+..+.+++.++++.|.+       ....+..+..++.
T Consensus       398 ~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l-------~~~~~~~~~~~~~  470 (635)
T 4g8a_A          398 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT-------RVAFNGIFNGLSS  470 (635)
T ss_dssp             CCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCC-------EECCTTTTTTCTT
T ss_pred             hhhhhhccccccccccccccccccccchhhhhcccccccccccccccccccccccccccc-------ccccccccccchh
Confidence            899999888877777777888899999999886665555555578889999999998887       5566677888899


Q ss_pred             CceeEEEecCCC--CCCccc-ccCCccEEEEEEcCc----ccccccCccceEEEEeCCCcccchHHHHHHhcccceeeec
Q 037732          237 LISLELQIQDVN--TFPRGL-FLEKLETFKILIGGV----WGWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLS  309 (350)
Q Consensus       237 L~~L~l~~~~~~--~l~~~~-~~~~L~~L~l~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~  309 (350)
                      ++.|++++|...  ..|..+ .+++|++|++..+.+    +..++.+++|+.|++++|....++...+..+++|+.|+|+
T Consensus       471 L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls  550 (635)
T 4g8a_A          471 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYS  550 (635)
T ss_dssp             CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECT
T ss_pred             hhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECC
Confidence            999999988642  245555 678999999976654    3357889999999999998888766545557999999999


Q ss_pred             cccccchhhhhhhhcccCc-CcceEEEEeCcccee
Q 037732          310 YLEEQDVNYFVNELVKVGP-SQLKHLYIRGSHLTL  343 (350)
Q Consensus       310 ~n~l~~~~~~~~~l~~~~~-~~L~~L~l~~~~~~~  343 (350)
                      +|++++.  .|..+  ..+ ++|+.|+|++||+.|
T Consensus       551 ~N~l~~~--~~~~l--~~l~~~L~~L~L~~Np~~C  581 (635)
T 4g8a_A          551 LNHIMTS--KKQEL--QHFPSSLAFLNLTQNDFAC  581 (635)
T ss_dssp             TSCCCBC--CSSCT--TCCCTTCCEEECTTCCBCC
T ss_pred             CCcCCCC--CHHHH--HhhhCcCCEEEeeCCCCcc
Confidence            9999984  45556  556 689999999999987

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.74  E-value=1.9e-18  Score=155.37  Aligned_cols=67  Identities=9%  Similarity=0.062  Sum_probs=48.1

Q ss_pred             CccceEEEEeCCCcccchH-HH---HHHhcccceeeeccccccc-----hhhhhhhhcccCcCcceEEEEeCccceec
Q 037732          276 DIWCREFKIDLDSKIRLKD-GL---ILKLEGIEDLWLSYLEEQD-----VNYFVNELVKVGPSQLKHLYIRGSHLTLN  344 (350)
Q Consensus       276 ~~~L~~L~l~~~~~~~~~~-~~---~~~~~~L~~L~L~~n~l~~-----~~~~~~~l~~~~~~~L~~L~l~~~~~~~~  344 (350)
                      +++|+.|++++|.....+. .+   ...+++|+.|++++|.+..     ...++..+  ..+++|+.|++++|++...
T Consensus       224 ~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~--~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          224 PNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAF--PNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             CTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTS--TTCCEEEEECTTSCBCCGG
T ss_pred             CCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHh--ccCCceEEEecCCCcCCCc
Confidence            4689999999987766443 22   2335899999999998433     22234445  6788999999999998764

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.74  E-value=5.6e-18  Score=161.39  Aligned_cols=172  Identities=24%  Similarity=0.284  Sum_probs=98.4

Q ss_pred             hcCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCCchhhhccCCCcEEEecCCCCccccccccCCCCccEEecc
Q 037732          108 ERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLR  187 (350)
Q Consensus       108 ~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~  187 (350)
                      ..+.+|+.|++++|.+..++ .+..+++|+.|++++|.+...+.+..+++|+.|++++|.+..+| .+..+++|++|+++
T Consensus        40 ~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls  117 (605)
T 1m9s_A           40 NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLE  117 (605)
T ss_dssp             HHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECT
T ss_pred             hcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEec
Confidence            35666777777777666665 36667777777777777666333666777777777777666655 56666666666666


Q ss_pred             CCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCCCCCCcccccCCccEEEEEEc
Q 037732          188 DCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRGLFLEKLETFKILIG  267 (350)
Q Consensus       188 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~  267 (350)
                      +|. +..++.  +..+++|+.|++++|.+...         ..+..+++|+.|++++|.+..++.               
T Consensus       118 ~N~-l~~l~~--l~~l~~L~~L~Ls~N~l~~l---------~~l~~l~~L~~L~Ls~N~l~~~~~---------------  170 (605)
T 1m9s_A          118 HNG-ISDING--LVHLPQLESLYLGNNKITDI---------TVLSRLTKLDTLSLEDNQISDIVP---------------  170 (605)
T ss_dssp             TSC-CCCCGG--GGGCTTCSEEECCSSCCCCC---------GGGGSCTTCSEEECCSSCCCCCGG---------------
T ss_pred             CCC-CCCCcc--ccCCCccCEEECCCCccCCc---------hhhcccCCCCEEECcCCcCCCchh---------------
Confidence            633 333433  56666666666666655321         335556666666666665544432               


Q ss_pred             CcccccccCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccc
Q 037732          268 GVWGWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQD  315 (350)
Q Consensus       268 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~  315 (350)
                           +..+++|+.|+|++|....++ .+. .+++|+.|+|++|.+..
T Consensus       171 -----l~~l~~L~~L~Ls~N~i~~l~-~l~-~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          171 -----LAGLTKLQNLYLSKNHISDLR-ALA-GLKNLDVLELFSQECLN  211 (605)
T ss_dssp             -----GTTCTTCCEEECCSSCCCBCG-GGT-TCTTCSEEECCSEEEEC
T ss_pred             -----hccCCCCCEEECcCCCCCCCh-HHc-cCCCCCEEEccCCcCcC
Confidence                 123344444444444444333 122 24555555555555544

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.73  E-value=1.9e-17  Score=156.22  Aligned_cols=191  Identities=17%  Similarity=0.219  Sum_probs=139.5

Q ss_pred             CCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCC-chhhhccCCCcEEE
Q 037732           84 PQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLD-ITVIRDLKKLAVLC  162 (350)
Q Consensus        84 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~  162 (350)
                      .+++.|++  +.+. ...+|..+   +++|+.|++++|.++.+|   ..+++|++|++++|.++. +. +..  +|++|+
T Consensus        59 ~~L~~L~L--s~n~-L~~lp~~l---~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~  126 (571)
T 3cvr_A           59 NQFSELQL--NRLN-LSSLPDNL---PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLD  126 (571)
T ss_dssp             TTCSEEEC--CSSC-CSCCCSCC---CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEE
T ss_pred             CCccEEEe--CCCC-CCccCHhH---cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEE
Confidence            37888888  4443 44577653   367888888888888877   456888888888888887 44 544  888888


Q ss_pred             ecCCCCccccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEE
Q 037732          163 LRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLEL  242 (350)
Q Consensus       163 l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l  242 (350)
                      +++|.++.+|.   .+++|+.|++++| .+..+|.    .+++|++|++++|.+..        +|. +.  ++|+.|++
T Consensus       127 Ls~N~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~----~l~~L~~L~Ls~N~L~~--------lp~-l~--~~L~~L~L  187 (571)
T 3cvr_A          127 VDNNQLTMLPE---LPALLEYINADNN-QLTMLPE----LPTSLEVLSVRNNQLTF--------LPE-LP--ESLEALDV  187 (571)
T ss_dssp             CCSSCCSCCCC---CCTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSSCCSC--------CCC-CC--TTCCEEEC
T ss_pred             CCCCcCCCCCC---cCccccEEeCCCC-ccCcCCC----cCCCcCEEECCCCCCCC--------cch-hh--CCCCEEEC
Confidence            88888888876   6788888888884 4455665    46788888888887732        344 43  78888888


Q ss_pred             EecCCCCCCcccccCCccEEEEEEcCcccccccCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccchhhhhhh
Q 037732          243 QIQDVNTFPRGLFLEKLETFKILIGGVWGWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNE  322 (350)
Q Consensus       243 ~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~  322 (350)
                      ++|.+..+|. +. .+|             ....+.|+.|++++|....+|..++. +++|+.|+|++|.+++.  +|..
T Consensus       188 s~N~L~~lp~-~~-~~L-------------~~~~~~L~~L~Ls~N~l~~lp~~l~~-l~~L~~L~L~~N~l~~~--~p~~  249 (571)
T 3cvr_A          188 STNLLESLPA-VP-VRN-------------HHSEETEIFFRCRENRITHIPENILS-LDPTCTIILEDNPLSSR--IRES  249 (571)
T ss_dssp             CSSCCSSCCC-CC----------------------CCEEEECCSSCCCCCCGGGGG-SCTTEEEECCSSSCCHH--HHHH
T ss_pred             cCCCCCchhh-HH-Hhh-------------hcccccceEEecCCCcceecCHHHhc-CCCCCEEEeeCCcCCCc--CHHH
Confidence            8888887776 31 111             11334569999999998899988877 79999999999999874  6666


Q ss_pred             h
Q 037732          323 L  323 (350)
Q Consensus       323 l  323 (350)
                      +
T Consensus       250 l  250 (571)
T 3cvr_A          250 L  250 (571)
T ss_dssp             H
T ss_pred             H
Confidence            5

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.73  E-value=4.9e-17  Score=141.57  Aligned_cols=178  Identities=21%  Similarity=0.246  Sum_probs=139.3

Q ss_pred             ccccccccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCCchhh
Q 037732           73 QTNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVI  152 (350)
Q Consensus        73 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~~l  152 (350)
                      .+..+.....+++|+.|++  +. +....++.  +..+++|+.|++++|.+..++. +..+++|++|++++|.+..++.+
T Consensus        35 ~~~~~~~~~~l~~L~~L~l--~~-~~i~~~~~--~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l  108 (291)
T 1h6t_A           35 SVTDAVTQNELNSIDQIIA--NN-SDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSSL  108 (291)
T ss_dssp             CTTSEECHHHHHTCCEEEC--TT-SCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGGG
T ss_pred             CcccccchhhcCcccEEEc--cC-CCcccChh--HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChhh
Confidence            3344444456788999999  33 44555554  5678999999999999988776 88999999999999998887778


Q ss_pred             hccCCCcEEEecCCCCccccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchh
Q 037732          153 RDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLH  232 (350)
Q Consensus       153 ~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~  232 (350)
                      ..+++|++|++++|.+..++ .+..+++|+.|++++| .+..++.  +..+++|++|++++|.+...        +. +.
T Consensus       109 ~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~L~~N~l~~~--------~~-l~  175 (291)
T 1h6t_A          109 KDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNN-KITDITV--LSRLTKLDTLSLEDNQISDI--------VP-LA  175 (291)
T ss_dssp             TTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECCSSCCCCC--------GG-GT
T ss_pred             ccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCC-cCCcchh--hccCCCCCEEEccCCccccc--------hh-hc
Confidence            99999999999999888874 6888999999999985 4454543  78899999999998887432        22 78


Q ss_pred             hcCCCceeEEEecCCCCCCcccccCCccEEEEEEcCc
Q 037732          233 ELKHLISLELQIQDVNTFPRGLFLEKLETFKILIGGV  269 (350)
Q Consensus       233 ~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~  269 (350)
                      .+++|+.|++++|.+..++....+++|+.|++..+.+
T Consensus       176 ~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n~i  212 (291)
T 1h6t_A          176 GLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQEC  212 (291)
T ss_dssp             TCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEEEEE
T ss_pred             CCCccCEEECCCCcCCCChhhccCCCCCEEECcCCcc
Confidence            8899999999999988876532678888888866543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.73  E-value=8.8e-19  Score=155.84  Aligned_cols=223  Identities=16%  Similarity=0.147  Sum_probs=157.7

Q ss_pred             CCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcC--CCccccCcccccEEEecCCCCCC--chhhhccCCCc
Q 037732           84 PQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLS--LPSSLGLLSNLQNLSLYNCKLLD--ITVIRDLKKLA  159 (350)
Q Consensus        84 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--lp~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~  159 (350)
                      ++++.|.+  ..+...+..+. ++ .+++|+.|++++|.+..  ++..+..+++|++|++++|.+.+  +..++.+++|+
T Consensus        70 ~~l~~L~l--~~n~l~~~~~~-~~-~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~  145 (336)
T 2ast_B           70 QGVIAFRC--PRSFMDQPLAE-HF-SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLV  145 (336)
T ss_dssp             TTCSEEEC--TTCEECSCCCS-CC-CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCS
T ss_pred             ccceEEEc--CCccccccchh-hc-cCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCC
Confidence            67888888  44444333333 33 68899999999998763  77778889999999999998876  67788899999


Q ss_pred             EEEecCC-CCc--cccccccCCCCccEEeccCCCCCCc--cCcchhCCCC-CCcEEEcCCCC--CCcchhhhccccccch
Q 037732          160 VLCLRGS-DIK--RLPVEVGELTLLRLLDLRDCMELEV--IPPNILSNLS-HLEELYMGPRS--FDKWEVEVEGVKNASL  231 (350)
Q Consensus       160 ~L~l~~~-~~~--~lp~~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~l~-~L~~L~l~~~~--~~~~~~~~~~~~~~~l  231 (350)
                      +|++++| .++  .++..+..+++|++|++++|..+..  ++.. +..++ +|++|++++|.  +.      .+.++..+
T Consensus       146 ~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-~~~l~~~L~~L~l~~~~~~~~------~~~l~~~~  218 (336)
T 2ast_B          146 RLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA-VAHVSETITQLNLSGYRKNLQ------KSDLSTLV  218 (336)
T ss_dssp             EEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH-HHHSCTTCCEEECCSCGGGSC------HHHHHHHH
T ss_pred             EEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHH-HHhcccCCCEEEeCCCcccCC------HHHHHHHH
Confidence            9999998 677  4676788899999999998734443  3443 67888 99999999884  32      13456677


Q ss_pred             hhcCCCceeEEEecC-CC-CCCccc-ccCCccEEEEEEcC-ccc----ccccCccceEEEEeCCCcccchH-HHHHHhcc
Q 037732          232 HELKHLISLELQIQD-VN-TFPRGL-FLEKLETFKILIGG-VWG----WEYADIWCREFKIDLDSKIRLKD-GLILKLEG  302 (350)
Q Consensus       232 ~~l~~L~~L~l~~~~-~~-~l~~~~-~~~~L~~L~l~~~~-~~~----~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~  302 (350)
                      ..+++|+.|++++|. +. ..+..+ .+++|++|++..+. +.+    .++.+++|+.|+++++    ++. .+.....+
T Consensus       219 ~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~----i~~~~~~~l~~~  294 (336)
T 2ast_B          219 RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI----VPDGTLQLLKEA  294 (336)
T ss_dssp             HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS----SCTTCHHHHHHH
T ss_pred             hhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc----cCHHHHHHHHhh
Confidence            888999999999988 44 344444 56777777776552 221    3667788888888876    222 23332245


Q ss_pred             cceeeeccccccchhhhhhhh
Q 037732          303 IEDLWLSYLEEQDVNYFVNEL  323 (350)
Q Consensus       303 L~~L~L~~n~l~~~~~~~~~l  323 (350)
                      |+.|++++|.+++.  .|..+
T Consensus       295 l~~L~l~~n~l~~~--~~~~~  313 (336)
T 2ast_B          295 LPHLQINCSHFTTI--ARPTI  313 (336)
T ss_dssp             STTSEESCCCSCCT--TCSSC
T ss_pred             CcceEEecccCccc--cCCcc
Confidence            67777888888774  44444

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.71  E-value=2.1e-16  Score=134.52  Aligned_cols=170  Identities=22%  Similarity=0.343  Sum_probs=100.0

Q ss_pred             CccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCC-ccccCcccccEEEecCCCCCC--chhhhccCCCcEE
Q 037732           85 QLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLP-SSLGLLSNLQNLSLYNCKLLD--ITVIRDLKKLAVL  161 (350)
Q Consensus        85 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L  161 (350)
                      ..+++++   .+.....+|..+   ..+++.|++++|.+..++ ..+..+++|++|++++|.+..  +..+..+++|++|
T Consensus        15 ~~~~l~~---~~~~l~~~p~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L   88 (251)
T 3m19_A           15 GKKEVDC---QGKSLDSVPSGI---PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTL   88 (251)
T ss_dssp             GGTEEEC---TTCCCSSCCSCC---CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCeEEec---CCCCccccCCCC---CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEE
Confidence            3445555   333344555432   245666666666666533 346666667777776666665  3445666667777


Q ss_pred             EecCCCCccccc-cccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCcee
Q 037732          162 CLRGSDIKRLPV-EVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISL  240 (350)
Q Consensus       162 ~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L  240 (350)
                      ++++|.+..+|. .+..+++|++|++++ +.+..++...+.++++|++|++++|.+.       +..+..++.+++|+.|
T Consensus        89 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-------~~~~~~~~~l~~L~~L  160 (251)
T 3m19_A           89 GLANNQLASLPLGVFDHLTQLDKLYLGG-NQLKSLPSGVFDRLTKLKELRLNTNQLQ-------SIPAGAFDKLTNLQTL  160 (251)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCC-------CCCTTTTTTCTTCCEE
T ss_pred             ECCCCcccccChhHhcccCCCCEEEcCC-CcCCCcChhHhccCCcccEEECcCCcCC-------ccCHHHcCcCcCCCEE
Confidence            776666665554 345666677777666 3444555544566666777777666652       2223356666667777


Q ss_pred             EEEecCCCCCCccc--ccCCccEEEEEEcC
Q 037732          241 ELQIQDVNTFPRGL--FLEKLETFKILIGG  268 (350)
Q Consensus       241 ~l~~~~~~~l~~~~--~~~~L~~L~l~~~~  268 (350)
                      ++++|.+..++...  .+++|+.|++..+.
T Consensus       161 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  190 (251)
T 3m19_A          161 SLSTNQLQSVPHGAFDRLGKLQTITLFGNQ  190 (251)
T ss_dssp             ECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred             ECCCCcCCccCHHHHhCCCCCCEEEeeCCc
Confidence            77777666665533  45666666665443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.71  E-value=2.8e-18  Score=154.28  Aligned_cols=225  Identities=14%  Similarity=0.079  Sum_probs=156.5

Q ss_pred             CCccEEEecccCCccccccCh----HHHhcCC-cceEEeecCCcCcC-CCccccCc-----ccccEEEecCCCCCC--ch
Q 037732           84 PQLELLFICADKESSSLTIPN----KFFERMI-QVRVINFSYMNLLS-LPSSLGLL-----SNLQNLSLYNCKLLD--IT  150 (350)
Q Consensus        84 ~~L~~L~l~~~~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~-lp~~l~~l-----~~L~~L~l~~~~l~~--~~  150 (350)
                      ++|++|++  +.+. ....+.    ..+..++ +|++|++++|.+.. .+..+..+     ++|++|++++|.+..  +.
T Consensus        22 ~~L~~L~L--s~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~   98 (362)
T 3goz_A           22 HGVTSLDL--SLNN-LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSD   98 (362)
T ss_dssp             TTCCEEEC--TTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH
T ss_pred             CCceEEEc--cCCC-CChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHH
Confidence            45999999  5544 455443    4456787 89999999999885 35555554     899999999999876  34


Q ss_pred             h----hhcc-CCCcEEEecCCCCccccc-c----ccC-CCCccEEeccCCCCCC----ccCcchhCCCC-CCcEEEcCCC
Q 037732          151 V----IRDL-KKLAVLCLRGSDIKRLPV-E----VGE-LTLLRLLDLRDCMELE----VIPPNILSNLS-HLEELYMGPR  214 (350)
Q Consensus       151 ~----l~~l-~~L~~L~l~~~~~~~lp~-~----l~~-l~~L~~L~l~~~~~~~----~~~~~~l~~l~-~L~~L~l~~~  214 (350)
                      .    +..+ ++|++|++++|.+...+. .    +.. .++|++|++++|....    .++.. +..++ +|++|++++|
T Consensus        99 ~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~-l~~~~~~L~~L~Ls~n  177 (362)
T 3goz_A           99 ELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI-LAAIPANVNSLNLRGN  177 (362)
T ss_dssp             HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH-HHTSCTTCCEEECTTS
T ss_pred             HHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH-HhcCCccccEeeecCC
Confidence            3    4444 899999999998885553 2    334 3699999999964432    23333 44555 8999999999


Q ss_pred             CCCcchhhhccccccchhhc-CCCceeEEEecCCCC-----CCccc-c-cCCccEEEEEEcCccc--------ccccCcc
Q 037732          215 SFDKWEVEVEGVKNASLHEL-KHLISLELQIQDVNT-----FPRGL-F-LEKLETFKILIGGVWG--------WEYADIW  278 (350)
Q Consensus       215 ~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~-----l~~~~-~-~~~L~~L~l~~~~~~~--------~~~~~~~  278 (350)
                      .+.....   ..+...+..+ ++|+.|++++|.+..     ++..+ . .++|++|++..+.+..        .+..+++
T Consensus       178 ~l~~~~~---~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~  254 (362)
T 3goz_A          178 NLASKNC---AELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKH  254 (362)
T ss_dssp             CGGGSCH---HHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTT
T ss_pred             CCchhhH---HHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCC
Confidence            8733221   1222344555 599999999999876     44444 2 3589999998766533        3567889


Q ss_pred             ceEEEEeCCCcccchH--------HHHHHhcccceeeeccccccch
Q 037732          279 CREFKIDLDSKIRLKD--------GLILKLEGIEDLWLSYLEEQDV  316 (350)
Q Consensus       279 L~~L~l~~~~~~~~~~--------~~~~~~~~L~~L~L~~n~l~~~  316 (350)
                      |+.|++++|....+..        .+. .+++|+.|++++|.+...
T Consensus       255 L~~L~L~~n~l~~i~~~~~~~l~~~~~-~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          255 LQTVYLDYDIVKNMSKEQCKALGAAFP-NIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             CSEEEEEHHHHTTCCHHHHHHHHTTST-TCCEEEEECTTSCBCCGG
T ss_pred             ccEEEeccCCccccCHHHHHHHHHHhc-cCCceEEEecCCCcCCCc
Confidence            9999999976333222        222 347899999999998763

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.70  E-value=2.8e-17  Score=140.95  Aligned_cols=126  Identities=21%  Similarity=0.255  Sum_probs=68.7

Q ss_pred             CCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCCchhhhccCCCcEEEecCCCCccccccccCCCCccEEeccCC
Q 037732          110 MIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDC  189 (350)
Q Consensus       110 l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~  189 (350)
                      +.++..++++++.++.++ .+..+++|++|++++|.+...+.+..+++|++|++++|.+..++. +..+++|++|++++ 
T Consensus        18 l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~-   94 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNR-   94 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCS-
T ss_pred             HHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCC-
Confidence            344555555555555544 355556666666666665554455566666666666666665554 55666666666665 


Q ss_pred             CCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCCCCC
Q 037732          190 MELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTF  250 (350)
Q Consensus       190 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l  250 (350)
                      +.+..++.  +.. ++|++|++++|.+...         +.+..+++|+.|++++|.+..+
T Consensus        95 N~l~~l~~--~~~-~~L~~L~L~~N~l~~~---------~~l~~l~~L~~L~Ls~N~i~~~  143 (263)
T 1xeu_A           95 NRLKNLNG--IPS-ACLSRLFLDNNELRDT---------DSLIHLKNLEILSIRNNKLKSI  143 (263)
T ss_dssp             SCCSCCTT--CCC-SSCCEEECCSSCCSBS---------GGGTTCTTCCEEECTTSCCCBC
T ss_pred             CccCCcCc--ccc-CcccEEEccCCccCCC---------hhhcCcccccEEECCCCcCCCC
Confidence            33333443  222 5566666666655221         1255555666666666555444

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.70  E-value=1.4e-16  Score=130.52  Aligned_cols=132  Identities=21%  Similarity=0.327  Sum_probs=78.9

Q ss_pred             cCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCCchhhhccCCCcEEEecCCCCcc-ccccccCCCCccEEecc
Q 037732          109 RMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGSDIKR-LPVEVGELTLLRLLDLR  187 (350)
Q Consensus       109 ~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~l~~~~~~~-lp~~l~~l~~L~~L~l~  187 (350)
                      .+++|+.|++++|.+..+| .+..+++|++|++++|.+..++.+..+++|++|++++|.+.. .|..+..+++|++|+++
T Consensus        42 ~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls  120 (197)
T 4ezg_A           42 QMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS  120 (197)
T ss_dssp             HHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred             hcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence            4556666666666666555 466666666666666655555566666666666666666653 45556666666666666


Q ss_pred             CCCCCCccCcchhCCCCCCcEEEcCCCC-CCcchhhhccccccchhhcCCCceeEEEecCCCCCC
Q 037732          188 DCMELEVIPPNILSNLSHLEELYMGPRS-FDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFP  251 (350)
Q Consensus       188 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~  251 (350)
                      +|......+.. ++++++|++|++++|. +.        .++ .+..+++|+.|++++|.+..++
T Consensus       121 ~n~i~~~~~~~-l~~l~~L~~L~L~~n~~i~--------~~~-~l~~l~~L~~L~l~~n~i~~~~  175 (197)
T 4ezg_A          121 HSAHDDSILTK-INTLPKVNSIDLSYNGAIT--------DIM-PLKTLPELKSLNIQFDGVHDYR  175 (197)
T ss_dssp             SSBCBGGGHHH-HTTCSSCCEEECCSCTBCC--------CCG-GGGGCSSCCEEECTTBCCCCCT
T ss_pred             CCccCcHhHHH-HhhCCCCCEEEccCCCCcc--------ccH-hhcCCCCCCEEECCCCCCcChH
Confidence            64433333433 5666666666666665 32        222 3566666666666666665554

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.69  E-value=2.3e-16  Score=148.76  Aligned_cols=94  Identities=22%  Similarity=0.280  Sum_probs=44.0

Q ss_pred             CCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCCchhhhccCCCcEEEecCCCCccccccccCCCCccEEeccCC
Q 037732          110 MIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDC  189 (350)
Q Consensus       110 l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~  189 (350)
                      +++|+.|++++|.++.+|. +..  +|++|++++|.++.++.  .+++|++|++++|.++.+|.   .+++|+.|++++|
T Consensus        99 l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N  170 (571)
T 3cvr_A           99 PASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQLTMLPE--LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNN  170 (571)
T ss_dssp             CTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSS
T ss_pred             cCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCcCCCCCC--cCccccEEeCCCCccCcCCC---cCCCcCEEECCCC
Confidence            4455555555555544444 332  45555555555444211  34455555555555554443   3445555555542


Q ss_pred             CCCCccCcchhCCCCCCcEEEcCCCCC
Q 037732          190 MELEVIPPNILSNLSHLEELYMGPRSF  216 (350)
Q Consensus       190 ~~~~~~~~~~l~~l~~L~~L~l~~~~~  216 (350)
                       .+..+|.  +.  ++|+.|++++|.+
T Consensus       171 -~L~~lp~--l~--~~L~~L~Ls~N~L  192 (571)
T 3cvr_A          171 -QLTFLPE--LP--ESLEALDVSTNLL  192 (571)
T ss_dssp             -CCSCCCC--CC--TTCCEEECCSSCC
T ss_pred             -CCCCcch--hh--CCCCEEECcCCCC
Confidence             2333443  22  4455555555544

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.68  E-value=3.1e-16  Score=129.62  Aligned_cols=172  Identities=20%  Similarity=0.261  Sum_probs=109.6

Q ss_pred             EEeecCCcCcCCCccccCcccccEEEecCCCCCC-c-hhhhccCCCcEEEecCCCCcccccc-ccCCCCccEEeccCCCC
Q 037732          115 VINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLD-I-TVIRDLKKLAVLCLRGSDIKRLPVE-VGELTLLRLLDLRDCME  191 (350)
Q Consensus       115 ~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~-~-~~l~~l~~L~~L~l~~~~~~~lp~~-l~~l~~L~~L~l~~~~~  191 (350)
                      .++.+++.+..+|..+  .++|++|++++|.+.. + ..+..+++|++|++++|.+..+|.. +..+++|++|++++| .
T Consensus        11 ~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~   87 (208)
T 2o6s_A           11 TVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN-Q   87 (208)
T ss_dssp             EEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-C
T ss_pred             EEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC-c
Confidence            4555555555555543  3467777777777666 2 3456677777777777777666653 466777777777773 3


Q ss_pred             CCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCCCCCCcccccCCccEEEEEEcCccc
Q 037732          192 LEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRGLFLEKLETFKILIGGVWG  271 (350)
Q Consensus       192 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~  271 (350)
                      +..++...+.++++|++|++++|.+.       +..+..+..+++|+.|++++|.+..++...                 
T Consensus        88 l~~~~~~~~~~l~~L~~L~L~~N~l~-------~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~-----------------  143 (208)
T 2o6s_A           88 LQSLPNGVFDKLTQLKELALNTNQLQ-------SLPDGVFDKLTQLKDLRLYQNQLKSVPDGV-----------------  143 (208)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCC-------CCCTTTTTTCTTCCEEECCSSCCSCCCTTT-----------------
T ss_pred             CCccCHhHhcCccCCCEEEcCCCcCc-------ccCHhHhccCCcCCEEECCCCccceeCHHH-----------------
Confidence            44555544567777777777777663       233344677777888888777776665542                 


Q ss_pred             ccccCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccchhhhhhhh
Q 037732          272 WEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNEL  323 (350)
Q Consensus       272 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l  323 (350)
                       +..+++|+.|++++|....       .+++|+.|++..|.+++.  +|..+
T Consensus       144 -~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~--ip~~~  185 (208)
T 2o6s_A          144 -FDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGV--VRNSA  185 (208)
T ss_dssp             -TTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTT--BBCTT
T ss_pred             -hccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCce--eeccC
Confidence             2345566666666654322       246788888888888874  77666

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.68  E-value=7.9e-17  Score=144.06  Aligned_cols=220  Identities=13%  Similarity=0.093  Sum_probs=120.9

Q ss_pred             ccccChHHHhcCCcceEEeecCCcCcCCCc-cccCcccccEEEecCCCCCC-c--hhhhccCCCcE-EEecCCCCccccc
Q 037732           99 SLTIPNKFFERMIQVRVINFSYMNLLSLPS-SLGLLSNLQNLSLYNCKLLD-I--TVIRDLKKLAV-LCLRGSDIKRLPV  173 (350)
Q Consensus        99 ~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~l~~-~--~~l~~l~~L~~-L~l~~~~~~~lp~  173 (350)
                      ..++|..+   .++++.|++++|.++.+|. .|.++++|++|++++|.+.+ +  ..+.+++++.. +.+.+|++..++.
T Consensus        21 Lt~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~   97 (350)
T 4ay9_X           21 VTEIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINP   97 (350)
T ss_dssp             CCSCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECT
T ss_pred             CCccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCc
Confidence            44555433   2456666666666666554 45666666666666666544 1  34555666554 3444556665543


Q ss_pred             -cccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCC-CCCcchhhhccccccchhhcC-CCceeEEEecCCCCC
Q 037732          174 -EVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPR-SFDKWEVEVEGVKNASLHELK-HLISLELQIQDVNTF  250 (350)
Q Consensus       174 -~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~l  250 (350)
                       .+..+++|++|++++ +.+..++.........+..|++.++ .+..       ..+..+..+. .++.|++++|.+..+
T Consensus        98 ~~f~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~-------l~~~~f~~~~~~l~~L~L~~N~i~~i  169 (350)
T 4ay9_X           98 EAFQNLPNLQYLLISN-TGIKHLPDVHKIHSLQKVLLDIQDNINIHT-------IERNSFVGLSFESVILWLNKNGIQEI  169 (350)
T ss_dssp             TSBCCCTTCCEEEEEE-ECCSSCCCCTTCCBSSCEEEEEESCTTCCE-------ECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred             hhhhhccccccccccc-cccccCCchhhcccchhhhhhhcccccccc-------ccccchhhcchhhhhhccccccccCC
Confidence             456666666666666 3344444322334445555655443 2211       1112233332 466666666666666


Q ss_pred             Cccc-ccCCccEEEEEEcC----cc-cccccCccceEEEEeCCCcccchHHHHHHhcccceeeeccc-cccchhhhhhhh
Q 037732          251 PRGL-FLEKLETFKILIGG----VW-GWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYL-EEQDVNYFVNEL  323 (350)
Q Consensus       251 ~~~~-~~~~L~~L~l~~~~----~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~l  323 (350)
                      +... ...+|+.+.+..+.    ++ ..++.+++|+.|++++|....+|.+.   +.+|+.|.+.++ .++.   +| .+
T Consensus       170 ~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~---lP-~l  242 (350)
T 4ay9_X          170 HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKK---LP-TL  242 (350)
T ss_dssp             CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCC---CC-CT
T ss_pred             ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCc---CC-Cc
Confidence            6554 34455555553221    22 14567778888888888777777543   345555555432 3444   54 24


Q ss_pred             cccCcCcceEEEEeC
Q 037732          324 VKVGPSQLKHLYIRG  338 (350)
Q Consensus       324 ~~~~~~~L~~L~l~~  338 (350)
                        ..+++|+.+++.+
T Consensus       243 --~~l~~L~~l~l~~  255 (350)
T 4ay9_X          243 --EKLVALMEASLTY  255 (350)
T ss_dssp             --TTCCSCCEEECSC
T ss_pred             --hhCcChhhCcCCC
Confidence              6678888888765

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.68  E-value=2.2e-16  Score=150.39  Aligned_cols=166  Identities=22%  Similarity=0.278  Sum_probs=84.2

Q ss_pred             CCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCCchhhhccCCCcE
Q 037732           81 VECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAV  160 (350)
Q Consensus        81 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~  160 (350)
                      ..+++|+.|.+   .+.....++.  +..+++|+.|++++|.+..++. +..+++|++|++++|.+..++.+..+++|+.
T Consensus        40 ~~L~~L~~L~l---~~n~i~~l~~--l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~  113 (605)
T 1m9s_A           40 NELNSIDQIIA---NNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLSSLKDLKKLKS  113 (605)
T ss_dssp             HHHTTCCCCBC---TTCCCCCCTT--GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCTTSTTCTTCCE
T ss_pred             hcCCCCCEEEC---cCCCCCCChH--HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCChhhccCCCCCE
Confidence            34445555555   2222333332  3455555555555555555444 5555555555555555555445555555555


Q ss_pred             EEecCCCCccccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCcee
Q 037732          161 LCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISL  240 (350)
Q Consensus       161 L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L  240 (350)
                      |++++|.+..++ .+..+++|+.|++++|. +..++.  +..+++|+.|++++|.+.       +..+  +..+++|+.|
T Consensus       114 L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l~~--l~~l~~L~~L~Ls~N~l~-------~~~~--l~~l~~L~~L  180 (605)
T 1m9s_A          114 LSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDITV--LSRLTKLDTLSLEDNQIS-------DIVP--LAGLTKLQNL  180 (605)
T ss_dssp             EECTTSCCCCCG-GGGGCTTCSEEECCSSC-CCCCGG--GGSCTTCSEEECCSSCCC-------CCGG--GTTCTTCCEE
T ss_pred             EEecCCCCCCCc-cccCCCccCEEECCCCc-cCCchh--hcccCCCCEEECcCCcCC-------Cchh--hccCCCCCEE
Confidence            555555555543 35555555555555532 233322  455555555555555542       1111  5555555555


Q ss_pred             EEEecCCCCCCcccccCCccEEEEE
Q 037732          241 ELQIQDVNTFPRGLFLEKLETFKIL  265 (350)
Q Consensus       241 ~l~~~~~~~l~~~~~~~~L~~L~l~  265 (350)
                      ++++|.+..++....+++|+.|++.
T Consensus       181 ~Ls~N~i~~l~~l~~l~~L~~L~L~  205 (605)
T 1m9s_A          181 YLSKNHISDLRALAGLKNLDVLELF  205 (605)
T ss_dssp             ECCSSCCCBCGGGTTCTTCSEEECC
T ss_pred             ECcCCCCCCChHHccCCCCCEEEcc
Confidence            5555555554321144555555543

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.67  E-value=7.2e-17  Score=154.44  Aligned_cols=65  Identities=8%  Similarity=-0.009  Sum_probs=35.7

Q ss_pred             CccceEEEEeCCCccc-chHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEeCcccee
Q 037732          276 DIWCREFKIDLDSKIR-LKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLTL  343 (350)
Q Consensus       276 ~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~  343 (350)
                      +++|+.|+++++.... ....+...+++|+.|+|++|.+++. .++..+  ..+++|+.|++++|+++.
T Consensus       462 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~--~~l~~L~~L~ls~n~it~  527 (592)
T 3ogk_B          462 SPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSER-AIAAAV--TKLPSLRYLWVQGYRASM  527 (592)
T ss_dssp             CTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHH-HHHHHH--HHCSSCCEEEEESCBCCT
T ss_pred             CccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHH-HHHHHH--HhcCccCeeECcCCcCCH
Confidence            5566666666654332 1112223356677777776666432 233333  456777777777777654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.67  E-value=5.5e-16  Score=126.96  Aligned_cols=152  Identities=16%  Similarity=0.216  Sum_probs=125.2

Q ss_pred             CCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCC--chhhhccCCC
Q 037732           81 VECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLD--ITVIRDLKKL  158 (350)
Q Consensus        81 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L  158 (350)
                      ..+++++.|++  +.+ ....++.  +..+++|+.|++++|.+..++ .+..+++|++|++++|.++.  +..++.+++|
T Consensus        41 ~~l~~L~~L~l--~~n-~i~~l~~--l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L  114 (197)
T 4ezg_A           41 AQMNSLTYITL--ANI-NVTDLTG--IEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSL  114 (197)
T ss_dssp             HHHHTCCEEEE--ESS-CCSCCTT--GGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC
T ss_pred             hhcCCccEEec--cCC-CccChHH--HhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCC
Confidence            45678999999  444 4456663  568999999999999776554 68899999999999999986  7889999999


Q ss_pred             cEEEecCCCCcc-ccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCC
Q 037732          159 AVLCLRGSDIKR-LPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHL  237 (350)
Q Consensus       159 ~~L~l~~~~~~~-lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L  237 (350)
                      ++|++++|.+.. .|..+..+++|++|++++|..+..++.  +..+++|++|++++|.+..        ++ .+..+++|
T Consensus       115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~~--------~~-~l~~l~~L  183 (197)
T 4ezg_A          115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHD--------YR-GIEDFPKL  183 (197)
T ss_dssp             CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCCC--------CT-TGGGCSSC
T ss_pred             CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCcC--------hH-HhccCCCC
Confidence            999999999984 677899999999999999765777774  7999999999999998843        22 58889999


Q ss_pred             ceeEEEecCCCC
Q 037732          238 ISLELQIQDVNT  249 (350)
Q Consensus       238 ~~L~l~~~~~~~  249 (350)
                      +.|++++|.++.
T Consensus       184 ~~L~l~~N~i~~  195 (197)
T 4ezg_A          184 NQLYAFSQTIGG  195 (197)
T ss_dssp             CEEEECBC----
T ss_pred             CEEEeeCcccCC
Confidence            999999998753

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.66  E-value=3.8e-16  Score=149.39  Aligned_cols=250  Identities=13%  Similarity=0.071  Sum_probs=158.2

Q ss_pred             CCCCccEEEecccCCccc----cccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEec---------------
Q 037732           82 ECPQLELLFICADKESSS----LTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLY---------------  142 (350)
Q Consensus        82 ~~~~L~~L~l~~~~~~~~----~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~---------------  142 (350)
                      .+++|++|++  +.+...    ..+ ..++..+++|+.|++++|.+..+|..+..+++|++|+++               
T Consensus       190 ~~~~L~~L~L--~~n~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l  266 (592)
T 3ogk_B          190 HNTSLEVLNF--YMTEFAKISPKDL-ETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNL  266 (592)
T ss_dssp             HCCCCCEEEC--TTCCCSSCCHHHH-HHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCC
T ss_pred             cCCCccEEEe--eccCCCccCHHHH-HHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHh
Confidence            4677777777  333332    112 223446777777777777665555545555555555554               


Q ss_pred             ------------CCCCCC-chhhhccCCCcEEEecCCCCc--cccccccCCCCccEEeccCCCCCCccCcchhCCCCCCc
Q 037732          143 ------------NCKLLD-ITVIRDLKKLAVLCLRGSDIK--RLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLE  207 (350)
Q Consensus       143 ------------~~~l~~-~~~l~~l~~L~~L~l~~~~~~--~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~  207 (350)
                                  ++.... +..+..+++|++|++++|.+.  .++..+..+++|++|++++ .........+...+++|+
T Consensus       267 ~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~-~~~~~~l~~~~~~~~~L~  345 (592)
T 3ogk_B          267 VFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRN-VIGDRGLEVLAQYCKQLK  345 (592)
T ss_dssp             CCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEG-GGHHHHHHHHHHHCTTCC
T ss_pred             hccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccC-ccCHHHHHHHHHhCCCCC
Confidence                        332223 455667889999999998865  3334467899999999984 322222223246788899


Q ss_pred             EEEcCC----------CCCCcchhhhccccccchhhcCCCceeEEEecCCCCC-Cccc--ccCCccEEEEEEcC----cc
Q 037732          208 ELYMGP----------RSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTF-PRGL--FLEKLETFKILIGG----VW  270 (350)
Q Consensus       208 ~L~l~~----------~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l-~~~~--~~~~L~~L~l~~~~----~~  270 (350)
                      +|++++          +....     ...+......+++|+.|+++.+.+..- +..+  .+++|++|++....    +.
T Consensus       346 ~L~L~~g~~~~~~~~~~~~~~-----~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~  420 (592)
T 3ogk_B          346 RLRIERGADEQGMEDEEGLVS-----QRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERIT  420 (592)
T ss_dssp             EEEEECCCCSSTTSSTTCCCC-----HHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCS
T ss_pred             EEEeecCccccccccccCccC-----HHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCcccc
Confidence            999983          32211     112233356688999999988776531 2222  27889999996422    21


Q ss_pred             ---------cccccCccceEEEEeCCC---cccchHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEeC
Q 037732          271 ---------GWEYADIWCREFKIDLDS---KIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRG  338 (350)
Q Consensus       271 ---------~~~~~~~~L~~L~l~~~~---~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~  338 (350)
                               ..+..+++|++|+++.+.   .......+...+++|+.|+|++|.+++. .++..+  ..+++|++|+|++
T Consensus       421 ~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~--~~~~~L~~L~l~~  497 (592)
T 3ogk_B          421 DLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDE-GLMEFS--RGCPNLQKLEMRG  497 (592)
T ss_dssp             SCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHH-HHHHHH--TCCTTCCEEEEES
T ss_pred             CchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHH-HHHHHH--hcCcccCeeeccC
Confidence                     125568899999997532   2233445555578899999999888763 345555  6789999999999


Q ss_pred             cccee
Q 037732          339 SHLTL  343 (350)
Q Consensus       339 ~~~~~  343 (350)
                      |+++.
T Consensus       498 n~l~~  502 (592)
T 3ogk_B          498 CCFSE  502 (592)
T ss_dssp             CCCBH
T ss_pred             CCCcH
Confidence            98653

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.65  E-value=1.1e-15  Score=137.25  Aligned_cols=129  Identities=23%  Similarity=0.278  Sum_probs=63.8

Q ss_pred             EEeecCCcCcCCCccccCcccccEEEecCCCCCC-c-hhhh-ccCCCcEEEecCCCCccccc-cccCCCCccEEeccCCC
Q 037732          115 VINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLD-I-TVIR-DLKKLAVLCLRGSDIKRLPV-EVGELTLLRLLDLRDCM  190 (350)
Q Consensus       115 ~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~-~-~~l~-~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~  190 (350)
                      .++++++.+..+|..+.  ..++.|++++|.++. + ..+. .+++|++|++++|.+..++. .+..+++|++|++++ +
T Consensus        22 ~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~-N   98 (361)
T 2xot_A           22 ILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS-N   98 (361)
T ss_dssp             EEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-S
T ss_pred             EEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC-C
Confidence            44555555555544332  234555555555544 2 2233 45555555555555554443 345555555555555 2


Q ss_pred             CCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCCCCCCcc
Q 037732          191 ELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRG  253 (350)
Q Consensus       191 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~  253 (350)
                      .+..++...+.++++|++|++++|.+       ....+..+.++++|+.|++++|.+..+|..
T Consensus        99 ~l~~~~~~~~~~l~~L~~L~L~~N~i-------~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~  154 (361)
T 2xot_A           99 HLHTLDEFLFSDLQALEVLLLYNNHI-------VVVDRNAFEDMAQLQKLYLSQNQISRFPVE  154 (361)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCC-------CEECTTTTTTCTTCCEEECCSSCCCSCCGG
T ss_pred             cCCcCCHHHhCCCcCCCEEECCCCcc-------cEECHHHhCCcccCCEEECCCCcCCeeCHH
Confidence            33444443345555555555555555       222334455555555555555555555444

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.65  E-value=1e-15  Score=131.10  Aligned_cols=161  Identities=21%  Similarity=0.260  Sum_probs=104.2

Q ss_pred             ccccccccccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCCch
Q 037732           71 EEQTNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDIT  150 (350)
Q Consensus        71 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~  150 (350)
                      ...+..++.+..+++|+.|++  +. +....++.  +..+++|+.|++++|.+..++. +..+++|++|++++|.++..+
T Consensus        28 ~~~i~~~~~~~~l~~L~~L~l--~~-n~i~~l~~--l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~  101 (263)
T 1xeu_A           28 KQSVTDLVSQKELSGVQNFNG--DN-SNIQSLAG--MQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLN  101 (263)
T ss_dssp             CSCTTSEECHHHHTTCSEEEC--TT-SCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCT
T ss_pred             CCCcccccchhhcCcCcEEEC--cC-CCcccchH--HhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcC
Confidence            334445555556677777777  33 33445552  4567777777777777776665 777777777777777776633


Q ss_pred             hhhccCCCcEEEecCCCCccccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccc
Q 037732          151 VIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNAS  230 (350)
Q Consensus       151 ~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~  230 (350)
                      .+.. ++|++|++++|.+..++ .+..+++|+.|++++| .+..++.  +..+++|++|++++|.+..       .  ..
T Consensus       102 ~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N-~i~~~~~--l~~l~~L~~L~L~~N~i~~-------~--~~  167 (263)
T 1xeu_A          102 GIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNN-KLKSIVM--LGFLSKLEVLDLHGNEITN-------T--GG  167 (263)
T ss_dssp             TCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTS-CCCBCGG--GGGCTTCCEEECTTSCCCB-------C--TT
T ss_pred             cccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCC-cCCCChH--HccCCCCCEEECCCCcCcc-------h--HH
Confidence            3333 77777777777777665 4677777777777773 3444543  5677777777777776632       1  44


Q ss_pred             hhhcCCCceeEEEecCCCCCC
Q 037732          231 LHELKHLISLELQIQDVNTFP  251 (350)
Q Consensus       231 l~~l~~L~~L~l~~~~~~~l~  251 (350)
                      +..+++|+.|++++|.+...|
T Consensus       168 l~~l~~L~~L~l~~N~~~~~~  188 (263)
T 1xeu_A          168 LTRLKKVNWIDLTGQKCVNEP  188 (263)
T ss_dssp             STTCCCCCEEEEEEEEEECCC
T ss_pred             hccCCCCCEEeCCCCcccCCc
Confidence            666777777777777665444

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.65  E-value=5.8e-16  Score=129.09  Aligned_cols=149  Identities=15%  Similarity=0.154  Sum_probs=83.0

Q ss_pred             cEEEecCCCCCC-chhhhccCCCcEEEecCCCCccccc-cccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCC
Q 037732          137 QNLSLYNCKLLD-ITVIRDLKKLAVLCLRGSDIKRLPV-EVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPR  214 (350)
Q Consensus       137 ~~L~l~~~~l~~-~~~l~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~  214 (350)
                      +.++.+++.++. |..+.  ++++.|++++|.+..++. .+..+++|+.|++++| .+..+++..+.++++|++|++++|
T Consensus        14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCC
Confidence            456666666655 44332  566666776666665554 4566666666666663 333332222566666666666666


Q ss_pred             CCCcchhhhccccccchhhcCCCceeEEEecCCCCCCcccccCCccEEEEEEcCcccccccCccceEEEEeCCCcccchH
Q 037732          215 SFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRGLFLEKLETFKILIGGVWGWEYADIWCREFKIDLDSKIRLKD  294 (350)
Q Consensus       215 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  294 (350)
                      .+..       ..+..+.++++|+.|++++|.+..++..                  .+..+++|+.|++++|....++.
T Consensus        91 ~l~~-------l~~~~f~~l~~L~~L~L~~N~l~~~~~~------------------~~~~l~~L~~L~L~~N~l~~~~~  145 (220)
T 2v9t_B           91 KITE-------LPKSLFEGLFSLQLLLLNANKINCLRVD------------------AFQDLHNLNLLSLYDNKLQTIAK  145 (220)
T ss_dssp             CCCC-------CCTTTTTTCTTCCEEECCSSCCCCCCTT------------------TTTTCTTCCEEECCSSCCSCCCT
T ss_pred             cCCc-------cCHhHccCCCCCCEEECCCCCCCEeCHH------------------HcCCCCCCCEEECCCCcCCEECH
Confidence            6522       2223355566666666666666555333                  23345566666666665555554


Q ss_pred             HHHHHhcccceeeeccccc
Q 037732          295 GLILKLEGIEDLWLSYLEE  313 (350)
Q Consensus       295 ~~~~~~~~L~~L~L~~n~l  313 (350)
                      ..+..+++|+.|+|++|.+
T Consensus       146 ~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B          146 GTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             TTTTTCTTCCEEECCSSCE
T ss_pred             HHHhCCCCCCEEEeCCCCc
Confidence            3333346666666666654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.64  E-value=6.5e-16  Score=138.11  Aligned_cols=217  Identities=17%  Similarity=0.168  Sum_probs=160.0

Q ss_pred             eEEeecCCcCcCCCccccCcccccEEEecCCCCCC-c-hhhhccCCCcEEEecCCCCc-cccc-cccCCCCccEEeccCC
Q 037732          114 RVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLD-I-TVIRDLKKLAVLCLRGSDIK-RLPV-EVGELTLLRLLDLRDC  189 (350)
Q Consensus       114 ~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~-~-~~l~~l~~L~~L~l~~~~~~-~lp~-~l~~l~~L~~L~l~~~  189 (350)
                      ++++-+++.++.+|..+  ..++++|++++|+++. + ..+..+++|++|++++|.+. .+|. .+.++++++.+....+
T Consensus        12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~   89 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   89 (350)
T ss_dssp             TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred             CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence            56777888888899876  3689999999999988 4 46899999999999999875 5665 4678888887666555


Q ss_pred             CCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEe-cCCCCCCccc--c-cCCccEEEEE
Q 037732          190 MELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQI-QDVNTFPRGL--F-LEKLETFKIL  265 (350)
Q Consensus       190 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~l~~~~--~-~~~L~~L~l~  265 (350)
                      +.+..+++..+..+++|++|++++|.+...       .+..+.....+..+++.. +.+..++...  . ...++.|++.
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~-------~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~  162 (350)
T 4ay9_X           90 NNLLYINPEAFQNLPNLQYLLISNTGIKHL-------PDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLN  162 (350)
T ss_dssp             TTCCEECTTSBCCCTTCCEEEEEEECCSSC-------CCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECC
T ss_pred             CcccccCchhhhhccccccccccccccccC-------Cchhhcccchhhhhhhccccccccccccchhhcchhhhhhccc
Confidence            777888776689999999999999888432       233445556677888865 4566666543  2 2467788887


Q ss_pred             EcCccc---ccccCccceEEEEeC-CCcccchHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEeCc-c
Q 037732          266 IGGVWG---WEYADIWCREFKIDL-DSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGS-H  340 (350)
Q Consensus       266 ~~~~~~---~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~-~  340 (350)
                      .+.+..   ......+|+.+.+.+ +....+|...+..+++|+.|++++|.++.   +|.    ..+.+|+.|++.++ .
T Consensus       163 ~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~---lp~----~~~~~L~~L~~l~~~~  235 (350)
T 4ay9_X          163 KNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS---LPS----YGLENLKKLRARSTYN  235 (350)
T ss_dssp             SSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC---CCS----SSCTTCCEEECTTCTT
T ss_pred             cccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc---cCh----hhhccchHhhhccCCC
Confidence            665432   233456788888875 77888887665567999999999999987   553    34677888876664 4


Q ss_pred             ceeccC
Q 037732          341 LTLNPA  346 (350)
Q Consensus       341 ~~~~p~  346 (350)
                      +..+|+
T Consensus       236 l~~lP~  241 (350)
T 4ay9_X          236 LKKLPT  241 (350)
T ss_dssp             CCCCCC
T ss_pred             cCcCCC
Confidence            666665

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.63  E-value=7.6e-16  Score=138.26  Aligned_cols=176  Identities=20%  Similarity=0.155  Sum_probs=118.1

Q ss_pred             ccEEEecCCCCCC-chhhhccCCCcEEEecCCCCcccccc-cc-CCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcC
Q 037732          136 LQNLSLYNCKLLD-ITVIRDLKKLAVLCLRGSDIKRLPVE-VG-ELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMG  212 (350)
Q Consensus       136 L~~L~l~~~~l~~-~~~l~~l~~L~~L~l~~~~~~~lp~~-l~-~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~  212 (350)
                      -+.++++++.+.. |..+.  ..++.|++++|.+..++.. +. .+++|+.|++++ +.+..++...+.++++|++|+++
T Consensus        20 ~~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~-N~i~~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           20 SNILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSH-NHLNFISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TTEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCC-CcCCccChhhccCCCCCCEEECC
Confidence            4688999988888 55443  4689999999999988765 44 899999999998 55666665558899999999999


Q ss_pred             CCCCCcchhhhccccccchhhcCCCceeEEEecCCCCCCcccccCCccEEEEEEcCcccccccCccceEEEEeCCCcccc
Q 037732          213 PRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRGLFLEKLETFKILIGGVWGWEYADIWCREFKIDLDSKIRL  292 (350)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~  292 (350)
                      +|.+.       ...+..+.++++|+.|++++|.+..++...                  +..+++|+.|++++|....+
T Consensus        97 ~N~l~-------~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~------------------~~~l~~L~~L~L~~N~l~~l  151 (361)
T 2xot_A           97 SNHLH-------TLDEFLFSDLQALEVLLLYNNHIVVVDRNA------------------FEDMAQLQKLYLSQNQISRF  151 (361)
T ss_dssp             SSCCC-------EECTTTTTTCTTCCEEECCSSCCCEECTTT------------------TTTCTTCCEEECCSSCCCSC
T ss_pred             CCcCC-------cCCHHHhCCCcCCCEEECCCCcccEECHHH------------------hCCcccCCEEECCCCcCCee
Confidence            99883       334456888999999999999987764432                  23444555555555555555


Q ss_pred             hHHHH---HHhcccceeeeccccccchhhhhhhhcccCcCc--ceEEEEeCcccee
Q 037732          293 KDGLI---LKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQ--LKHLYIRGSHLTL  343 (350)
Q Consensus       293 ~~~~~---~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~--L~~L~l~~~~~~~  343 (350)
                      |...+   ..+++|+.|+|++|.++.+  -+..+  ..++.  |+.|++.+|++.+
T Consensus       152 ~~~~~~~~~~l~~L~~L~L~~N~l~~l--~~~~~--~~l~~~~l~~l~l~~N~~~C  203 (361)
T 2xot_A          152 PVELIKDGNKLPKLMLLDLSSNKLKKL--PLTDL--QKLPAWVKNGLYLHNNPLEC  203 (361)
T ss_dssp             CGGGTC----CTTCCEEECCSSCCCCC--CHHHH--HHSCHHHHTTEECCSSCEEC
T ss_pred             CHHHhcCcccCCcCCEEECCCCCCCcc--CHHHh--hhccHhhcceEEecCCCccC
Confidence            44332   2345666666666665552  11223  33444  3556666665553

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.62  E-value=5e-15  Score=123.35  Aligned_cols=129  Identities=19%  Similarity=0.299  Sum_probs=70.2

Q ss_pred             EEeecCCcCcCCCccccCcccccEEEecCCCCCC--chhhhccCCCcEEEecCCCCccc-cccccCCCCccEEeccCCCC
Q 037732          115 VINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLD--ITVIRDLKKLAVLCLRGSDIKRL-PVEVGELTLLRLLDLRDCME  191 (350)
Q Consensus       115 ~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~~~~  191 (350)
                      .++.+++.++.+|..+.  ++++.|++++|.+..  +..+..+++|++|++++|.+..+ |..+..+++|++|++++ +.
T Consensus        15 ~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~-N~   91 (220)
T 2v9t_B           15 IVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG-NK   91 (220)
T ss_dssp             EEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS-SC
T ss_pred             EEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC-Cc
Confidence            45555555555554432  455555555555555  23455555566666655555544 34455556666666655 33


Q ss_pred             CCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCCCCCCcc
Q 037732          192 LEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRG  253 (350)
Q Consensus       192 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~  253 (350)
                      +..+|...+.++++|++|++++|.+       .+..+..+..+++|+.|++++|.+..++..
T Consensus        92 l~~l~~~~f~~l~~L~~L~L~~N~l-------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  146 (220)
T 2v9t_B           92 ITELPKSLFEGLFSLQLLLLNANKI-------NCLRVDAFQDLHNLNLLSLYDNKLQTIAKG  146 (220)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCC-------CCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             CCccCHhHccCCCCCCEEECCCCCC-------CEeCHHHcCCCCCCCEEECCCCcCCEECHH
Confidence            4445554445566666666666655       233344555666666666666666555443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.62  E-value=3.6e-15  Score=123.13  Aligned_cols=164  Identities=20%  Similarity=0.278  Sum_probs=104.7

Q ss_pred             ccccccccccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCcc-ccCcccccEEEecCCCCCC-
Q 037732           71 EEQTNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSS-LGLLSNLQNLSLYNCKLLD-  148 (350)
Q Consensus        71 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-l~~l~~L~~L~l~~~~l~~-  148 (350)
                      ...+..+|. .-.+++++|++  +.+ ....++...+..+++|++|++++|.+..+|.. +..+++|++|++++|.++. 
T Consensus        16 ~~~l~~~p~-~~~~~l~~L~l--~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~   91 (208)
T 2o6s_A           16 SQGRTSVPT-GIPAQTTYLDL--ETN-SLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL   91 (208)
T ss_dssp             SSCCSSCCS-CCCTTCSEEEC--CSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             CCCccCCCC-CCCCCCcEEEc--CCC-ccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCcc
Confidence            334444543 22357777777  333 34455555556777788888877777765543 5677778888887777776 


Q ss_pred             c-hhhhccCCCcEEEecCCCCcccccc-ccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccc
Q 037732          149 I-TVIRDLKKLAVLCLRGSDIKRLPVE-VGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGV  226 (350)
Q Consensus       149 ~-~~l~~l~~L~~L~l~~~~~~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~  226 (350)
                      + ..+..+++|++|++++|.+..++.. +..+++|++|++++| .+..++...+.++++|++|++++|.+          
T Consensus        92 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~----------  160 (208)
T 2o6s_A           92 PNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPW----------  160 (208)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCB----------
T ss_pred             CHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCCe----------
Confidence            3 3457777788888777777766654 567777777777774 44455555467777777777777765          


Q ss_pred             cccchhhcCCCceeEEEecCCC-CCCcc
Q 037732          227 KNASLHELKHLISLELQIQDVN-TFPRG  253 (350)
Q Consensus       227 ~~~~l~~l~~L~~L~l~~~~~~-~l~~~  253 (350)
                          .+.+++|+.|+++.|.+. .+|..
T Consensus       161 ----~~~~~~l~~L~~~~n~~~g~ip~~  184 (208)
T 2o6s_A          161 ----DCTCPGIRYLSEWINKHSGVVRNS  184 (208)
T ss_dssp             ----CCCTTTTHHHHHHHHHCTTTBBCT
T ss_pred             ----ecCCCCHHHHHHHHHhCCceeecc
Confidence                223445666666666543 44443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.61  E-value=1.7e-14  Score=121.00  Aligned_cols=130  Identities=28%  Similarity=0.423  Sum_probs=82.3

Q ss_pred             ceEEeecCCcCcCCCccccCcccccEEEecCCCCCC--chhhhccCCCcEEEecCCCCcccccc-ccCCCCccEEeccCC
Q 037732          113 VRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLD--ITVIRDLKKLAVLCLRGSDIKRLPVE-VGELTLLRLLDLRDC  189 (350)
Q Consensus       113 L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~l~~~~~~~lp~~-l~~l~~L~~L~l~~~  189 (350)
                      -+.++.+++.+..+|..+.  ++|++|++++|.+..  +..+..+++|++|++++|.+..+|.. +..+++|+.|++++ 
T Consensus        21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~-   97 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT-   97 (229)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-
T ss_pred             CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC-
Confidence            3456666666666665443  566777777776666  35566667777777777766666643 46667777777766 


Q ss_pred             CCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCCCCCCcc
Q 037732          190 MELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRG  253 (350)
Q Consensus       190 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~  253 (350)
                      +.+..++...+..+++|++|++++|.+.        .+|..+..+++|+.|++++|.+..++..
T Consensus        98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~--------~lp~~~~~l~~L~~L~L~~N~l~~~~~~  153 (229)
T 3e6j_A           98 NQLTVLPSAVFDRLVHLKELFMCCNKLT--------ELPRGIERLTHLTHLALDQNQLKSIPHG  153 (229)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCC--------SCCTTGGGCTTCSEEECCSSCCCCCCTT
T ss_pred             CcCCccChhHhCcchhhCeEeccCCccc--------ccCcccccCCCCCEEECCCCcCCccCHH
Confidence            3444555544566777777777776662        4455566677777777777776666544

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.60  E-value=2.1e-15  Score=125.68  Aligned_cols=151  Identities=17%  Similarity=0.129  Sum_probs=105.2

Q ss_pred             ccEEEecCCCCCC-chhhhccCCCcEEEecCCCCccccc--cccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcC
Q 037732          136 LQNLSLYNCKLLD-ITVIRDLKKLAVLCLRGSDIKRLPV--EVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMG  212 (350)
Q Consensus       136 L~~L~l~~~~l~~-~~~l~~l~~L~~L~l~~~~~~~lp~--~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~  212 (350)
                      -+.++++++.++. |..+.  ..+++|++++|.+..++.  .+..+++|++|++++ +.+..++...+.++++|++|+++
T Consensus        13 ~~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~-N~i~~i~~~~~~~l~~L~~L~Ls   89 (220)
T 2v70_A           13 GTTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSN-NKITDIEEGAFEGASGVNEILLT   89 (220)
T ss_dssp             TTEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCC-CcCCEECHHHhCCCCCCCEEECC
Confidence            3578888888877 54442  456788888888887743  377888888888888 44555665447888888888888


Q ss_pred             CCCCCcchhhhccccccchhhcCCCceeEEEecCCCCCCcccccCCccEEEEEEcCcccccccCccceEEEEeCCCcccc
Q 037732          213 PRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRGLFLEKLETFKILIGGVWGWEYADIWCREFKIDLDSKIRL  292 (350)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~  292 (350)
                      +|.+       .+..+..+..+++|+.|++++|.+..++..                  .+..+++|+.|++++|....+
T Consensus        90 ~N~l-------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~------------------~~~~l~~L~~L~L~~N~l~~~  144 (220)
T 2v70_A           90 SNRL-------ENVQHKMFKGLESLKTLMLRSNRITCVGND------------------SFIGLSSVRLLSLYDNQITTV  144 (220)
T ss_dssp             SSCC-------CCCCGGGGTTCSSCCEEECTTSCCCCBCTT------------------SSTTCTTCSEEECTTSCCCCB
T ss_pred             CCcc-------CccCHhHhcCCcCCCEEECCCCcCCeECHh------------------HcCCCccCCEEECCCCcCCEE
Confidence            8887       344455677888888888888887766443                  234566677777777666665


Q ss_pred             hHHHHHHhcccceeeecccccc
Q 037732          293 KDGLILKLEGIEDLWLSYLEEQ  314 (350)
Q Consensus       293 ~~~~~~~~~~L~~L~L~~n~l~  314 (350)
                      +...+..+++|+.|++++|.+.
T Consensus       145 ~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A          145 APGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             CTTTTTTCTTCCEEECCSCCEE
T ss_pred             CHHHhcCCCCCCEEEecCcCCc
Confidence            3322233577777777777664

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.60  E-value=4.5e-15  Score=118.26  Aligned_cols=139  Identities=22%  Similarity=0.196  Sum_probs=92.3

Q ss_pred             CCcceEEeecCCcCc--CCCccccCcccccEEEecCCCCCCchhhhccCCCcEEEecCCCCcc-ccccccCCCCccEEec
Q 037732          110 MIQVRVINFSYMNLL--SLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGSDIKR-LPVEVGELTLLRLLDL  186 (350)
Q Consensus       110 l~~L~~L~l~~~~~~--~lp~~l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~l~~~~~~~-lp~~l~~l~~L~~L~l  186 (350)
                      .++++.|++++|.+.  .+|..+..+++|++|++++|.+.....+..+++|++|++++|.+.. +|..+..+++|++|++
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  102 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL  102 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence            466777777777776  5666667777777777777776666666677777777777777775 5555566777777777


Q ss_pred             cCCCCCCccCc-chhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCCCCCCcc
Q 037732          187 RDCMELEVIPP-NILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRG  253 (350)
Q Consensus       187 ~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~  253 (350)
                      ++| .+..++. ..+..+++|++|++++|.+...+.    .....+..+++|+.|+++.|...++|..
T Consensus       103 s~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~~  165 (168)
T 2ell_A          103 SGN-KLKDISTLEPLKKLECLKSLDLFNCEVTNLND----YRESVFKLLPQLTYLDGYDREDQEAPDS  165 (168)
T ss_dssp             BSS-SCCSSGGGGGGSSCSCCCEEECCSSGGGTSTT----HHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred             cCC-ccCcchhHHHHhcCCCCCEEEeeCCcCcchHH----HHHHHHHhCccCcEecCCCCChhhcccc
Confidence            774 3444431 226777778888887776632110    0013567777888888888877766654

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.59  E-value=6.5e-16  Score=147.81  Aligned_cols=64  Identities=5%  Similarity=0.047  Sum_probs=39.8

Q ss_pred             CccceEEEEeCCCccc-chHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEeCccce
Q 037732          276 DIWCREFKIDLDSKIR-LKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLT  342 (350)
Q Consensus       276 ~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~  342 (350)
                      +++|+.|+++++.... ....+...+++|+.|+|++|.+++. .+...+  ..+++|+.|++++|+++
T Consensus       455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~-~~~~~~--~~l~~L~~L~l~~~~~~  519 (594)
T 2p1m_B          455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDK-ALLANA--SKLETMRSLWMSSCSVS  519 (594)
T ss_dssp             CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHH-HHHHTG--GGGGGSSEEEEESSCCB
T ss_pred             chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHH-HHHHHH--HhCCCCCEEeeeCCCCC
Confidence            6677777777765422 2223334467888888887777442 222233  45788888888888763

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.59  E-value=1.1e-14  Score=121.32  Aligned_cols=147  Identities=15%  Similarity=0.176  Sum_probs=82.7

Q ss_pred             cEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCC--ccccCcccccEEEecCCCCCC--chhhhccCCCcEEE
Q 037732           87 ELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLP--SSLGLLSNLQNLSLYNCKLLD--ITVIRDLKKLAVLC  162 (350)
Q Consensus        87 ~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp--~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~  162 (350)
                      +++++   .++....+|..+   ...++.|++++|.++.++  ..|..+++|++|++++|.++.  +..+..+++|++|+
T Consensus        14 ~~l~~---s~n~l~~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~   87 (220)
T 2v70_A           14 TTVDC---SNQKLNKIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEIL   87 (220)
T ss_dssp             TEEEC---CSSCCSSCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             CEeEe---CCCCcccCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEE
Confidence            34555   233344455432   234556666666666542  235666666666666666665  23566666666666


Q ss_pred             ecCCCCcccccc-ccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeE
Q 037732          163 LRGSDIKRLPVE-VGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLE  241 (350)
Q Consensus       163 l~~~~~~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  241 (350)
                      +++|.+..++.. +..+++|+.|++++|. +..+++..+.++++|++|++++|.+       .+..|..+..+++|+.|+
T Consensus        88 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l-------~~~~~~~~~~l~~L~~L~  159 (220)
T 2v70_A           88 LTSNRLENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQI-------TTVAPGAFDTLHSLSTLN  159 (220)
T ss_dssp             CCSSCCCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSCC-------CCBCTTTTTTCTTCCEEE
T ss_pred             CCCCccCccCHhHhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCcC-------CEECHHHhcCCCCCCEEE
Confidence            666666655543 5566666666666633 3333322256666666666666665       333345566666666666


Q ss_pred             EEecCC
Q 037732          242 LQIQDV  247 (350)
Q Consensus       242 l~~~~~  247 (350)
                      +++|.+
T Consensus       160 L~~N~l  165 (220)
T 2v70_A          160 LLANPF  165 (220)
T ss_dssp             CCSCCE
T ss_pred             ecCcCC
Confidence            666654

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.58  E-value=5.8e-16  Score=148.19  Aligned_cols=249  Identities=15%  Similarity=0.083  Sum_probs=123.9

Q ss_pred             CCCccEEEecccCCccccccChHHHhcCCcceEEeecCC-cCcC--CCccccCcccccEEEecCCCCCC--chhhh----
Q 037732           83 CPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYM-NLLS--LPSSLGLLSNLQNLSLYNCKLLD--ITVIR----  153 (350)
Q Consensus        83 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~--lp~~l~~l~~L~~L~l~~~~l~~--~~~l~----  153 (350)
                      +++|++|++  +.+......+..+...+++|+.|++++| .+..  ++..+..+++|++|++++|.+++  +..+.    
T Consensus       104 ~~~L~~L~L--~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~  181 (594)
T 2p1m_B          104 YTWLEEIRL--KRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD  181 (594)
T ss_dssp             CTTCCEEEE--ESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred             CCCCCeEEe--eCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence            445555555  3333322233333334555555555555 2322  33323345555555555555433  22222    


Q ss_pred             ccCCCcEEEecCCC--Cc--cccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCC------------
Q 037732          154 DLKKLAVLCLRGSD--IK--RLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFD------------  217 (350)
Q Consensus       154 ~l~~L~~L~l~~~~--~~--~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~------------  217 (350)
                      .+++|+.|++++|.  +.  .++..+..+++|++|++++|.....++.. +.++++|++|+++.+...            
T Consensus       182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~  260 (594)
T 2p1m_B          182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATL-LQRAPQLEELGTGGYTAEVRPDVYSGLSVA  260 (594)
T ss_dssp             TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHH-HHHCTTCSEEECSBCCCCCCHHHHHHHHHH
T ss_pred             cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHH-HhcCCcceEcccccccCccchhhHHHHHHH
Confidence            33455555555543  11  12222233455555555554333333332 344555555554332110            


Q ss_pred             -----------cchhhhccccccchhhcCCCceeEEEecCCCC--CCccc-ccCCccEEEEEEcC----cccccccCccc
Q 037732          218 -----------KWEVEVEGVKNASLHELKHLISLELQIQDVNT--FPRGL-FLEKLETFKILIGG----VWGWEYADIWC  279 (350)
Q Consensus       218 -----------~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--l~~~~-~~~~L~~L~l~~~~----~~~~~~~~~~L  279 (350)
                                 .......+.++..+..+++|+.|++++|.+..  ++..+ .+++|++|++..+-    ...+...+++|
T Consensus       261 l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L  340 (594)
T 2p1m_B          261 LSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDL  340 (594)
T ss_dssp             HHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTC
T ss_pred             HhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCC
Confidence                       00000012344445567888888888887542  11112 46888888887651    11123457889


Q ss_pred             eEEEEeC---------CCccc-chHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEe
Q 037732          280 REFKIDL---------DSKIR-LKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIR  337 (350)
Q Consensus       280 ~~L~l~~---------~~~~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~  337 (350)
                      +.|++.+         +.... ....+...+++|+.|.+++|.+++.  ....+. ..+++|+.|++.
T Consensus       341 ~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~--~~~~l~-~~~~~L~~L~L~  405 (594)
T 2p1m_B          341 RELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNA--ALITIA-RNRPNMTRFRLC  405 (594)
T ss_dssp             CEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHH--HHHHHH-HHCTTCCEEEEE
T ss_pred             CEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHH--HHHHHH-hhCCCcceeEee
Confidence            9998843         12111 1223444578999998888888763  233331 357999999999

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.58  E-value=2.9e-14  Score=119.54  Aligned_cols=129  Identities=22%  Similarity=0.286  Sum_probs=70.9

Q ss_pred             CcceEEeecCCcCcCC-CccccCcccccEEEecCCCCCC-c-hhhhccCCCcEEEecCCCCcccccc-ccCCCCccEEec
Q 037732          111 IQVRVINFSYMNLLSL-PSSLGLLSNLQNLSLYNCKLLD-I-TVIRDLKKLAVLCLRGSDIKRLPVE-VGELTLLRLLDL  186 (350)
Q Consensus       111 ~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~~~l~~-~-~~l~~l~~L~~L~l~~~~~~~lp~~-l~~l~~L~~L~l  186 (350)
                      ++|+.|++++|.+..+ |..|..+++|++|++++|.+.. + ..+..+++|++|++++|.++.++.. +..+++|+.|++
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L  119 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM  119 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence            5556666666665543 4445556666666666666555 2 3345566666666666666555543 355566666666


Q ss_pred             cCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCCC
Q 037732          187 RDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVN  248 (350)
Q Consensus       187 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  248 (350)
                      ++ +.+..+|.. +.++++|++|++++|.+..       ..+..+..+++|+.|++++|.+.
T Consensus       120 s~-N~l~~lp~~-~~~l~~L~~L~L~~N~l~~-------~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          120 CC-NKLTELPRG-IERLTHLTHLALDQNQLKS-------IPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             CS-SCCCSCCTT-GGGCTTCSEEECCSSCCCC-------CCTTTTTTCTTCCEEECTTSCBC
T ss_pred             cC-CcccccCcc-cccCCCCCEEECCCCcCCc-------cCHHHHhCCCCCCEEEeeCCCcc
Confidence            55 334455554 4556666666666655521       22234555566666666666543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.51  E-value=2.7e-14  Score=111.31  Aligned_cols=123  Identities=20%  Similarity=0.193  Sum_probs=67.1

Q ss_pred             CcceEEeecCCcCc--CCCccccCcccccEEEecCCCCCCchhhhccCCCcEEEecCCCCcc-ccccccCCCCccEEecc
Q 037732          111 IQVRVINFSYMNLL--SLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGSDIKR-LPVEVGELTLLRLLDLR  187 (350)
Q Consensus       111 ~~L~~L~l~~~~~~--~lp~~l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~l~~~~~~~-lp~~l~~l~~L~~L~l~  187 (350)
                      ++++.|++++|.+.  .+|..+..+++|++|++++|.+.....++.+++|++|++++|.+.. +|..+..+++|++|+++
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls   96 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS   96 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECT
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECC
Confidence            45556666666555  4555555566666666666655555555556666666666665554 44444556666666666


Q ss_pred             CCCCCCccC--cchhCCCCCCcEEEcCCCCCCcchhhhccccc---cchhhcCCCceeEE
Q 037732          188 DCMELEVIP--PNILSNLSHLEELYMGPRSFDKWEVEVEGVKN---ASLHELKHLISLEL  242 (350)
Q Consensus       188 ~~~~~~~~~--~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~---~~l~~l~~L~~L~l  242 (350)
                      +|. +..++  .. ++.+++|++|++++|.+.       +..+   ..+..+++|+.|++
T Consensus        97 ~N~-i~~~~~~~~-~~~l~~L~~L~l~~N~l~-------~~~~~~~~~~~~l~~L~~L~l  147 (149)
T 2je0_A           97 GNK-IKDLSTIEP-LKKLENLKSLDLFNCEVT-------NLNDYRENVFKLLPQLTYLDG  147 (149)
T ss_dssp             TSC-CCSHHHHGG-GGGCTTCCEEECTTCGGG-------GSTTHHHHHHHHCTTCCEETT
T ss_pred             CCc-CCChHHHHH-HhhCCCCCEEeCcCCccc-------chHHHHHHHHHHCCCcccccC
Confidence            533 33322  22 555666666666666552       1111   24555666666554

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.50  E-value=1.1e-13  Score=110.14  Aligned_cols=133  Identities=22%  Similarity=0.298  Sum_probs=110.5

Q ss_pred             CCCCccEEEecccCCccc-cccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCC--chhhhccCCC
Q 037732           82 ECPQLELLFICADKESSS-LTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLD--ITVIRDLKKL  158 (350)
Q Consensus        82 ~~~~L~~L~l~~~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L  158 (350)
                      ..++++.|++  +.+... +.+|.. +..+++|++|++++|.+..+ ..+..+++|++|++++|.+..  +..+..+++|
T Consensus        22 ~~~~L~~L~l--~~n~l~~~~i~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   97 (168)
T 2ell_A           22 TPAAVRELVL--DNCKSNDGKIEGL-TAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL   97 (168)
T ss_dssp             CTTSCSEEEC--CSCBCBTTBCSSC-CGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC
T ss_pred             CcccCCEEEC--CCCCCChhhHHHH-HHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCC
Confidence            3478999999  555543 367765 46899999999999999887 778999999999999999988  4556679999


Q ss_pred             cEEEecCCCCcccc--ccccCCCCccEEeccCCCCCCccCc---chhCCCCCCcEEEcCCCCCCcc
Q 037732          159 AVLCLRGSDIKRLP--VEVGELTLLRLLDLRDCMELEVIPP---NILSNLSHLEELYMGPRSFDKW  219 (350)
Q Consensus       159 ~~L~l~~~~~~~lp--~~l~~l~~L~~L~l~~~~~~~~~~~---~~l~~l~~L~~L~l~~~~~~~~  219 (350)
                      ++|++++|.+..+|  ..+..+++|++|++++| .+..++.   ..+..+++|++|++++|.....
T Consensus        98 ~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  162 (168)
T 2ell_A           98 THLNLSGNKLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDREDQEA  162 (168)
T ss_dssp             CEEECBSSSCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred             CEEeccCCccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence            99999999999877  68899999999999995 4555565   3489999999999998887543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.50  E-value=7.2e-16  Score=145.97  Aligned_cols=107  Identities=22%  Similarity=0.270  Sum_probs=53.0

Q ss_pred             ccEEEecCCCCCCchhhhccCCCcEEEecCCCCccccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCC
Q 037732          136 LQNLSLYNCKLLDITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRS  215 (350)
Q Consensus       136 L~~L~l~~~~l~~~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  215 (350)
                      |++|++++|.++.++.++.+++|+.|++++|.+..+|..++.+++|+.|++++| .+..+| . ++++++|++|++++|.
T Consensus       443 L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp-~-l~~l~~L~~L~Ls~N~  519 (567)
T 1dce_A          443 VRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN-ALENVD-G-VANLPRLQELLLCNNR  519 (567)
T ss_dssp             CSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCG-G-GTTCSSCCEEECCSSC
T ss_pred             ceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCC-CCCCCc-c-cCCCCCCcEEECCCCC
Confidence            445555555555522255555555555555555555555555555555555552 233344 2 4555555555555555


Q ss_pred             CCcchhhhcccc-ccchhhcCCCceeEEEecCCCCCCc
Q 037732          216 FDKWEVEVEGVK-NASLHELKHLISLELQIQDVNTFPR  252 (350)
Q Consensus       216 ~~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~l~~  252 (350)
                      +       .+.. |..++.+++|+.|++++|.+..+|+
T Consensus       520 l-------~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~  550 (567)
T 1dce_A          520 L-------QQSAAIQPLVSCPRLVLLNLQGNSLCQEEG  550 (567)
T ss_dssp             C-------CSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred             C-------CCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence            4       2222 4445555555555555555544433

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.50  E-value=3.4e-14  Score=138.49  Aligned_cols=118  Identities=22%  Similarity=0.247  Sum_probs=75.4

Q ss_pred             cCcCCCccccCcccccEEEecCCCCCC-chhhhccCCCcEEEecCCCCccccccccCCCCccEEeccCCCCCCccCcchh
Q 037732          122 NLLSLPSSLGLLSNLQNLSLYNCKLLD-ITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNIL  200 (350)
Q Consensus       122 ~~~~lp~~l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l  200 (350)
                      .+...+..+..+..|+.|++++|.+.. +..+..+++|++|++++|.+..+|..++++++|++|++++|. +..+|.. +
T Consensus       212 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~-~  289 (727)
T 4b8c_D          212 RMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAE-L  289 (727)
T ss_dssp             ----------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSS-G
T ss_pred             ceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChh-h
Confidence            333345566677777777777777766 566667777777777777777777777777777777777743 4466666 5


Q ss_pred             CCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCCCC
Q 037732          201 SNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNT  249 (350)
Q Consensus       201 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  249 (350)
                      +++++|++|++++|.+.        .+|..++++++|+.|++++|.+..
T Consensus       290 ~~l~~L~~L~L~~N~l~--------~lp~~~~~l~~L~~L~L~~N~l~~  330 (727)
T 4b8c_D          290 GSCFQLKYFYFFDNMVT--------TLPWEFGNLCNLQFLGVEGNPLEK  330 (727)
T ss_dssp             GGGTTCSEEECCSSCCC--------CCCSSTTSCTTCCCEECTTSCCCS
T ss_pred             cCCCCCCEEECCCCCCC--------ccChhhhcCCCccEEeCCCCccCC
Confidence            67777777777777652        445567777777777777776654

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.49  E-value=1.7e-13  Score=111.56  Aligned_cols=124  Identities=19%  Similarity=0.278  Sum_probs=64.6

Q ss_pred             eEEeecCCcCcCCCccccCcccccEEEecCCCCCC-ch--hhhccCCCcEEEecCCCCccc-cccccCCCCccEEeccCC
Q 037732          114 RVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLD-IT--VIRDLKKLAVLCLRGSDIKRL-PVEVGELTLLRLLDLRDC  189 (350)
Q Consensus       114 ~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~-~~--~l~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~~  189 (350)
                      +.++++++.++.+|..+..  ++++|++++|.+.. ++  .++.+++|++|++++|.++.+ |..+..+++|+.|++++|
T Consensus        11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N   88 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence            4455555555555554332  55555555555555 22  255555555555555555544 334555555555555552


Q ss_pred             CCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCC
Q 037732          190 MELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDV  247 (350)
Q Consensus       190 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  247 (350)
                       .+..++...+.++++|++|++++|.+       .+..|..+..+++|+.|++++|.+
T Consensus        89 -~l~~~~~~~~~~l~~L~~L~L~~N~l-------~~~~~~~~~~l~~L~~L~L~~N~l  138 (192)
T 1w8a_A           89 -KIKEISNKMFLGLHQLKTLNLYDNQI-------SCVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             -CCCEECSSSSTTCTTCCEEECCSSCC-------CEECTTSSTTCTTCCEEECTTCCB
T ss_pred             -cCCccCHHHhcCCCCCCEEECCCCcC-------CeeCHHHhhcCCCCCEEEeCCCCc
Confidence             23333333245555666666665555       333344555555566666655554

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.48  E-value=2.5e-14  Score=139.44  Aligned_cols=138  Identities=20%  Similarity=0.209  Sum_probs=112.4

Q ss_pred             cChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCC-chhhhccCCCcEEEecCCCCccccccccCCCC
Q 037732          102 IPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLD-ITVIRDLKKLAVLCLRGSDIKRLPVEVGELTL  180 (350)
Q Consensus       102 ~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~  180 (350)
                      ++...+..+..|+.|++++|.+..+|..+..+++|++|+|++|.++. |..++.+++|++|++++|.++.+|..++.+++
T Consensus       215 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~  294 (727)
T 4b8c_D          215 MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQ  294 (727)
T ss_dssp             -------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTT
T ss_pred             cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCC
Confidence            34444668999999999999999999988899999999999999988 78899999999999999999999999999999


Q ss_pred             ccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCC-CceeEEEecCCC
Q 037732          181 LRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKH-LISLELQIQDVN  248 (350)
Q Consensus       181 L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~  248 (350)
                      |++|++++| .+..+|.. ++++++|++|++++|.+       .+..|..+..+.. +..+++..|.+.
T Consensus       295 L~~L~L~~N-~l~~lp~~-~~~l~~L~~L~L~~N~l-------~~~~p~~~~~~~~~~~~l~l~~N~l~  354 (727)
T 4b8c_D          295 LKYFYFFDN-MVTTLPWE-FGNLCNLQFLGVEGNPL-------EKQFLKILTEKSVTGLIFYLRDNRPE  354 (727)
T ss_dssp             CSEEECCSS-CCCCCCSS-TTSCTTCCCEECTTSCC-------CSHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred             CCEEECCCC-CCCccChh-hhcCCCccEEeCCCCcc-------CCCChHHHhhcchhhhHHhhccCccc
Confidence            999999994 56788988 89999999999999998       4444555544321 223566677654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.47  E-value=1e-13  Score=111.26  Aligned_cols=132  Identities=14%  Similarity=0.170  Sum_probs=62.0

Q ss_pred             cCCcceEEeecCCcCcCCCccccCcc-cccEEEecCCCCCCchhhhccCCCcEEEecCCCCccccccc-cCCCCccEEec
Q 037732          109 RMIQVRVINFSYMNLLSLPSSLGLLS-NLQNLSLYNCKLLDITVIRDLKKLAVLCLRGSDIKRLPVEV-GELTLLRLLDL  186 (350)
Q Consensus       109 ~l~~L~~L~l~~~~~~~lp~~l~~l~-~L~~L~l~~~~l~~~~~l~~l~~L~~L~l~~~~~~~lp~~l-~~l~~L~~L~l  186 (350)
                      .+.+|+.|++++|.+..+|. +..+. +|++|++++|.++.++.+..+++|++|++++|.+..+|..+ ..+++|++|++
T Consensus        17 ~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L   95 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL   95 (176)
T ss_dssp             CTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred             CcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEEC
Confidence            34455555555555544433 22332 55555555555444444445555555555555555554433 45555555555


Q ss_pred             cCCCCCCccCc-chhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecC
Q 037732          187 RDCMELEVIPP-NILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQD  246 (350)
Q Consensus       187 ~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  246 (350)
                      ++| .+..+|. ..+..+++|++|++++|.+...+.    .....+..+++|+.|+++.|.
T Consensus        96 ~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~----~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A           96 TNN-SLVELGDLDPLASLKSLTYLCILRNPVTNKKH----YRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             CSC-CCCCGGGGGGGGGCTTCCEEECCSSGGGGSTT----HHHHHHHHCTTCSEETTEECC
T ss_pred             CCC-cCCcchhhHhhhcCCCCCEEEecCCCCCCcHh----HHHHHHHHCCccceeCCCcCC
Confidence            552 2333443 114455555555555555421110    000125555566666655554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.45  E-value=1.4e-13  Score=110.40  Aligned_cols=137  Identities=16%  Similarity=0.112  Sum_probs=110.8

Q ss_pred             cccccccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCC-chh-
Q 037732           74 TNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLD-ITV-  151 (350)
Q Consensus        74 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~-~~~-  151 (350)
                      +...+....+++++.|++  +.+ ....++. +....++|+.|++++|.++.+ ..+..+++|++|++++|.++. ++. 
T Consensus         9 i~~~~~~~~~~~L~~L~l--~~n-~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~   83 (176)
T 1a9n_A            9 IEQAAQYTNAVRDRELDL--RGY-KIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGL   83 (176)
T ss_dssp             HHTSCEEECTTSCEEEEC--TTS-CCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCH
T ss_pred             HHHHHhcCCcCCceEEEe--eCC-CCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcch
Confidence            334455667889999999  444 4455654 333345999999999999887 678999999999999999988 544 


Q ss_pred             hhccCCCcEEEecCCCCccccc--cccCCCCccEEeccCCCCCCccCcc---hhCCCCCCcEEEcCCCCC
Q 037732          152 IRDLKKLAVLCLRGSDIKRLPV--EVGELTLLRLLDLRDCMELEVIPPN---ILSNLSHLEELYMGPRSF  216 (350)
Q Consensus       152 l~~l~~L~~L~l~~~~~~~lp~--~l~~l~~L~~L~l~~~~~~~~~~~~---~l~~l~~L~~L~l~~~~~  216 (350)
                      +..+++|++|++++|.+..+|.  .+..+++|++|++++|. +..+|..   ++..+++|+.|+++.|..
T Consensus        84 ~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           84 DQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             HHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             hhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence            4899999999999999999887  78999999999999954 4556653   478899999999998775

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.44  E-value=1.1e-12  Score=106.81  Aligned_cols=123  Identities=20%  Similarity=0.318  Sum_probs=76.7

Q ss_pred             cEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCC--chhhhccCCCcEEEec
Q 037732           87 ELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLD--ITVIRDLKKLAVLCLR  164 (350)
Q Consensus        87 ~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~l~  164 (350)
                      +.+++   .+.....+|..+   .++++.|++++|.+..+|..|..+++|++|++++|.++.  +..+..+++|++|+++
T Consensus        13 ~~l~~---~~~~l~~ip~~~---~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls   86 (193)
T 2wfh_A           13 TVVRC---SNKGLKVLPKGI---PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS   86 (193)
T ss_dssp             TEEEC---TTSCCSSCCSCC---CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CEEEc---CCCCCCcCCCCC---CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECC
Confidence            34555   333345555432   246677777777776666666677777777777777666  3456667777777777


Q ss_pred             CCCCccccc-cccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCC
Q 037732          165 GSDIKRLPV-EVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSF  216 (350)
Q Consensus       165 ~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  216 (350)
                      +|.+..++. .+..+++|++|++++ +.+..++...+..+++|+.|++++|++
T Consensus        87 ~N~l~~i~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A           87 YNRLRCIPPRTFDGLKSLRLLSLHG-NDISVVPEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             SSCCCBCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CCccCEeCHHHhCCCCCCCEEECCC-CCCCeeChhhhhcCccccEEEeCCCCe
Confidence            776665554 466666777777766 344455554456666666666666654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.44  E-value=2.4e-13  Score=105.88  Aligned_cols=125  Identities=22%  Similarity=0.310  Sum_probs=103.5

Q ss_pred             CCCccEEEecccCCccc-cccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCC-c-hhhhccCCCc
Q 037732           83 CPQLELLFICADKESSS-LTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLD-I-TVIRDLKKLA  159 (350)
Q Consensus        83 ~~~L~~L~l~~~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~-~-~~l~~l~~L~  159 (350)
                      .++++.|++  +.+... +.+|.. +..+++|+.|++++|.+..+ ..+..+++|++|++++|.+.. + ..+..+++|+
T Consensus        16 ~~~l~~L~l--~~n~l~~~~~~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~   91 (149)
T 2je0_A           16 PSDVKELVL--DNSRSNEGKLEGL-TDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT   91 (149)
T ss_dssp             GGGCSEEEC--TTCBCBTTBCCSC-CTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred             CccCeEEEc--cCCcCChhHHHHH-HhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence            368999999  555544 367764 46899999999999999877 678999999999999999988 4 5566799999


Q ss_pred             EEEecCCCCcccc--ccccCCCCccEEeccCCCCCCccCc---chhCCCCCCcEEEcC
Q 037732          160 VLCLRGSDIKRLP--VEVGELTLLRLLDLRDCMELEVIPP---NILSNLSHLEELYMG  212 (350)
Q Consensus       160 ~L~l~~~~~~~lp--~~l~~l~~L~~L~l~~~~~~~~~~~---~~l~~l~~L~~L~l~  212 (350)
                      +|++++|.+..+|  ..+..+++|++|++++| .+...+.   ..+..+++|+.|+++
T Consensus        92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             EEECTTSCCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             EEECCCCcCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence            9999999999765  78999999999999995 4555554   347889999999875

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.44  E-value=8.4e-13  Score=107.47  Aligned_cols=125  Identities=22%  Similarity=0.287  Sum_probs=96.6

Q ss_pred             eEEeecCCcCcCCCccccCcccccEEEecCCCCCC-chhhhccCCCcEEEecCCCCccccc-cccCCCCccEEeccCCCC
Q 037732          114 RVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLD-ITVIRDLKKLAVLCLRGSDIKRLPV-EVGELTLLRLLDLRDCME  191 (350)
Q Consensus       114 ~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~~  191 (350)
                      +.++++++.+..+|..+.  .+|++|++++|.++. +..+..+++|++|++++|.++.++. .+..+++|++|++++ +.
T Consensus        13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~-N~   89 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY-NR   89 (193)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SC
T ss_pred             CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC-Cc
Confidence            567888888888887653  578888888888887 6788888888888888888887765 578888888888888 44


Q ss_pred             CCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCCC
Q 037732          192 LEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVN  248 (350)
Q Consensus       192 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  248 (350)
                      +..+++..+.++++|++|++++|.+..       ..+..+..+++|+.|++++|.+.
T Consensus        90 l~~i~~~~f~~l~~L~~L~L~~N~l~~-------~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           90 LRCIPPRTFDGLKSLRLLSLHGNDISV-------VPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CCBCCTTTTTTCTTCCEEECCSSCCCB-------CCTTTTTTCTTCCEEECCSSCEE
T ss_pred             cCEeCHHHhCCCCCCCEEECCCCCCCe-------eChhhhhcCccccEEEeCCCCee
Confidence            555665447888888888888888732       23345777888888888888753

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.41  E-value=9.4e-13  Score=107.12  Aligned_cols=124  Identities=20%  Similarity=0.245  Sum_probs=99.1

Q ss_pred             cEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCcc--ccCcccccEEEecCCCCCC--chhhhccCCCcEEE
Q 037732           87 ELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSS--LGLLSNLQNLSLYNCKLLD--ITVIRDLKKLAVLC  162 (350)
Q Consensus        87 ~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~--l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~  162 (350)
                      +++++   .+.....+|..++   .+++.|++++|.+..++..  +..+++|++|++++|.++.  +..+..+++|++|+
T Consensus        11 ~~l~~---s~~~l~~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~   84 (192)
T 1w8a_A           11 TTVDC---TGRGLKEIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQ   84 (192)
T ss_dssp             TEEEC---TTSCCSSCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred             CEEEc---CCCCcCcCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEE
Confidence            67778   3444577776543   3889999999999887653  8889999999999999888  57888999999999


Q ss_pred             ecCCCCcccccc-ccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCC
Q 037732          163 LRGSDIKRLPVE-VGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFD  217 (350)
Q Consensus       163 l~~~~~~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  217 (350)
                      +++|.+..++.. +..+++|++|++++|......|.. +..+++|++|++++|.+.
T Consensus        85 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           85 LGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGS-FEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTS-STTCTTCCEEECTTCCBC
T ss_pred             CCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHH-hhcCCCCCEEEeCCCCcc
Confidence            999999877654 788999999999995444433444 788999999999998874

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.38  E-value=5.7e-12  Score=101.03  Aligned_cols=123  Identities=23%  Similarity=0.381  Sum_probs=69.2

Q ss_pred             cEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCc-cccCcccccEEEecCCCCCC-c-hhhhccCCCcEEEe
Q 037732           87 ELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPS-SLGLLSNLQNLSLYNCKLLD-I-TVIRDLKKLAVLCL  163 (350)
Q Consensus        87 ~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~l~~-~-~~l~~l~~L~~L~l  163 (350)
                      +.+.+   .+.....+|..+   .++++.|++++|.+..+|. .+..+++|++|++++|.++. + ..+..+++|++|++
T Consensus        10 ~~l~~---~~~~l~~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   83 (177)
T 2o6r_A           10 TEIRC---NSKGLTSVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYL   83 (177)
T ss_dssp             TEEEC---CSSCCSSCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CEEEe---cCCCCccCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEEC
Confidence            44555   233344455332   3566666666666665443 34566666666666666655 2 33456666666666


Q ss_pred             cCCCCcccccc-ccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCC
Q 037732          164 RGSDIKRLPVE-VGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSF  216 (350)
Q Consensus       164 ~~~~~~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  216 (350)
                      ++|.++.+|.. +..+++|+.|++++| .+..++...+..+++|++|++++|.+
T Consensus        84 ~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~  136 (177)
T 2o6r_A           84 HENKLQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPW  136 (177)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             CCCCccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCCe
Confidence            66666655543 455666666666663 34445554345566666666666655

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.38  E-value=2.1e-12  Score=122.27  Aligned_cols=122  Identities=22%  Similarity=0.190  Sum_probs=102.5

Q ss_pred             cceEEeecCCcCcCCCccccCcccccEEEecCCCCCC-chhhhccCCCcEEEecCCCCccccccccCCCCccEEeccCCC
Q 037732          112 QVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLD-ITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCM  190 (350)
Q Consensus       112 ~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~  190 (350)
                      .|+.|++++|.++.+|. ++.+++|++|++++|.++. |..++.+++|++|++++|.++.+| .++.+++|+.|++++|.
T Consensus       442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~  519 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR  519 (567)
T ss_dssp             TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC
T ss_pred             CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCC
Confidence            57889999999999987 9999999999999999998 889999999999999999999998 89999999999999954


Q ss_pred             CCCcc--CcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeE
Q 037732          191 ELEVI--PPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLE  241 (350)
Q Consensus       191 ~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  241 (350)
                       +..+  |.. ++.+++|+.|++++|.+...+.    .....+..+++|+.|+
T Consensus       520 -l~~~~~p~~-l~~l~~L~~L~L~~N~l~~~~~----~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          520 -LQQSAAIQP-LVSCPRLVLLNLQGNSLCQEEG----IQERLAEMLPSVSSIL  566 (567)
T ss_dssp             -CCSSSTTGG-GGGCTTCCEEECTTSGGGGSSS----CTTHHHHHCTTCSEEE
T ss_pred             -CCCCCCcHH-HhcCCCCCEEEecCCcCCCCcc----HHHHHHHHCcccCccC
Confidence             5555  666 8999999999999998843321    1222345578888875

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.34  E-value=3.4e-14  Score=116.35  Aligned_cols=155  Identities=18%  Similarity=0.166  Sum_probs=112.0

Q ss_pred             CccEEEecccCC-ccccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCC-chhhhccCCCcEEE
Q 037732           85 QLELLFICADKE-SSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLD-ITVIRDLKKLAVLC  162 (350)
Q Consensus        85 ~L~~L~l~~~~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~  162 (350)
                      .++...+  ... .....+|.. +..+++|++|++++|.+..+| .+..+++|++|++++|.+.. +..+..+++|++|+
T Consensus        24 ~l~~~~l--~~~~~~l~~l~~~-~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~   99 (198)
T 1ds9_A           24 EAEKVEL--HGMIPPIEKMDAT-LSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELW   99 (198)
T ss_dssp             TCSEEEC--CBCCTTCCCCHHH-HHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEE
T ss_pred             chheeEe--ccccCcHhhhhHH-HhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEE
Confidence            4555555  221 123445544 568999999999999988888 78889999999999999888 66777789999999


Q ss_pred             ecCCCCccccccccCCCCccEEeccCCCCCCccCc-chhCCCCCCcEEEcCCCCCCcchhhh---ccccccchhhcCCCc
Q 037732          163 LRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPP-NILSNLSHLEELYMGPRSFDKWEVEV---EGVKNASLHELKHLI  238 (350)
Q Consensus       163 l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~---~~~~~~~l~~l~~L~  238 (350)
                      +++|.+..+| .+..+++|++|++++| .+..++. ..+..+++|++|++++|.+....+..   .......+..+++|+
T Consensus       100 L~~N~l~~l~-~~~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~  177 (198)
T 1ds9_A          100 ISYNQIASLS-GIEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLK  177 (198)
T ss_dssp             EEEEECCCHH-HHHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCS
T ss_pred             CcCCcCCcCC-ccccCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcE
Confidence            9999998887 6888899999999884 4554443 23788999999999988773321100   001122377888898


Q ss_pred             eeEEEecCC
Q 037732          239 SLELQIQDV  247 (350)
Q Consensus       239 ~L~l~~~~~  247 (350)
                      .|+  ++.+
T Consensus       178 ~Ld--~~~i  184 (198)
T 1ds9_A          178 KLD--GMPV  184 (198)
T ss_dssp             EEC--CGGG
T ss_pred             EEC--Cccc
Confidence            886  5544

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.31  E-value=1.8e-11  Score=98.04  Aligned_cols=128  Identities=25%  Similarity=0.351  Sum_probs=98.2

Q ss_pred             ceEEeecCCcCcCCCccccCcccccEEEecCCCCCC-c-hhhhccCCCcEEEecCCCCcccccc-ccCCCCccEEeccCC
Q 037732          113 VRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLD-I-TVIRDLKKLAVLCLRGSDIKRLPVE-VGELTLLRLLDLRDC  189 (350)
Q Consensus       113 L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~-~-~~l~~l~~L~~L~l~~~~~~~lp~~-l~~l~~L~~L~l~~~  189 (350)
                      .+.++++++.+..+|..+.  ++|++|++++|.+.. + ..+..+++|++|++++|.+..+|.. +..+++|+.|++++ 
T Consensus         9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-   85 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE-   85 (177)
T ss_dssp             TTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-
T ss_pred             CCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC-
Confidence            4678888888888876543  688999999988877 3 4568888999999998888877764 57888999999988 


Q ss_pred             CCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCCCCC
Q 037732          190 MELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTF  250 (350)
Q Consensus       190 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l  250 (350)
                      +.+..++...+..+++|++|++++|.+.       +..+..+..+++|+.|++++|.+...
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~-------~~~~~~~~~l~~L~~L~l~~N~~~~~  139 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLK-------SVPDGIFDRLTSLQKIWLHTNPWDCS  139 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCS-------CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcce-------EeCHHHhcCCcccCEEEecCCCeecc
Confidence            4455666655678889999999988873       22334467788899999988876543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.29  E-value=5e-12  Score=111.84  Aligned_cols=99  Identities=11%  Similarity=-0.002  Sum_probs=67.7

Q ss_pred             hcCCCceeEEEecCCCCCCccc--ccCCccEEEEEEcC--c-ccccccCccce-EEEEeCCCcccchHHHHHHhccccee
Q 037732          233 ELKHLISLELQIQDVNTFPRGL--FLEKLETFKILIGG--V-WGWEYADIWCR-EFKIDLDSKIRLKDGLILKLEGIEDL  306 (350)
Q Consensus       233 ~l~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~--~-~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L  306 (350)
                      .+++|+.+++..|.+..++...  .+.+|+++.+..+-  + ...+..|++|+ .+.+.. ....++...+..+++|+.+
T Consensus       224 ~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~ni~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          224 YMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHNLKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             HCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             hcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcccceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            3678888888887777777765  46777777774331  1 12467788888 888877 4555555445567888888


Q ss_pred             eeccccccchhhhhhhhcccCcCcceEEEE
Q 037732          307 WLSYLEEQDVNYFVNELVKVGPSQLKHLYI  336 (350)
Q Consensus       307 ~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l  336 (350)
                      ++++|.++.+  -+..|  .++++|+.++.
T Consensus       303 ~l~~n~i~~I--~~~aF--~~~~~L~~ly~  328 (329)
T 3sb4_A          303 LATGDKITTL--GDELF--GNGVPSKLIYK  328 (329)
T ss_dssp             EECSSCCCEE--CTTTT--CTTCCCCEEEC
T ss_pred             EeCCCccCcc--chhhh--cCCcchhhhcc
Confidence            8888888873  12345  67888888763

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.29  E-value=8.1e-11  Score=106.65  Aligned_cols=234  Identities=14%  Similarity=0.104  Sum_probs=118.7

Q ss_pred             CCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCc-cccCcccccEEEecCCCCCC--chhhhccCCCcE
Q 037732           84 PQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPS-SLGLLSNLQNLSLYNCKLLD--ITVIRDLKKLAV  160 (350)
Q Consensus        84 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~  160 (350)
                      ..+..+.+   . .....++...|.++ +|+.+.+..+ +..++. .|.. .+|+.+.+.. .+..  ...+..+.+|+.
T Consensus       113 ~~l~~i~i---p-~~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~  184 (401)
T 4fdw_A          113 KGYNEIIL---P-NSVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKK  184 (401)
T ss_dssp             SSCSEEEC---C-TTCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred             CCccEEEE---C-CccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCe
Confidence            44555555   2 22344444445443 5666666654 443332 3444 3566666664 3333  355666677777


Q ss_pred             EEecCCCCccccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCcee
Q 037732          161 LCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISL  240 (350)
Q Consensus       161 L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L  240 (350)
                      +++..|.+..++.....+.+|+.+.+..  .+..++...+.++++|+.+.+..+ +..       ....+|.+ .+|+.+
T Consensus       185 l~l~~n~l~~I~~~aF~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~~~-l~~-------I~~~aF~~-~~L~~i  253 (401)
T 4fdw_A          185 ADLSKTKITKLPASTFVYAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIPEN-VST-------IGQEAFRE-SGITTV  253 (401)
T ss_dssp             EECTTSCCSEECTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCCEECCTT-CCE-------ECTTTTTT-CCCSEE
T ss_pred             eecCCCcceEechhhEeecccCEEEeCC--chheehhhHhhCCCCCCEEecCCC-ccC-------cccccccc-CCccEE
Confidence            7776666666666544456677766653  255555555666677777766532 211       11223333 455555


Q ss_pred             EEEecCCCCCCccc--ccCCccEEEEEEcCcc---------cccccCccceEEEEeCCCcccchHHHHHHhcccceeeec
Q 037732          241 ELQIQDVNTFPRGL--FLEKLETFKILIGGVW---------GWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLS  309 (350)
Q Consensus       241 ~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~---------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~  309 (350)
                      .+ .+.+..++...  .+++|+.+.+..+...         ..+..|++|+.+.+.. ....++...+..+++|+.+.|.
T Consensus       254 ~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp  331 (401)
T 4fdw_A          254 KL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIP  331 (401)
T ss_dssp             EE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEEC
T ss_pred             Ee-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEEC
Confidence            55 33344443333  3555665555432211         1355556666665553 2334444333345566666664


Q ss_pred             cccccchhhhh-hhhcccCcCcceEEEEeCccceecc
Q 037732          310 YLEEQDVNYFV-NELVKVGPSQLKHLYIRGSHLTLNP  345 (350)
Q Consensus       310 ~n~l~~~~~~~-~~l~~~~~~~L~~L~l~~~~~~~~p  345 (350)
                      .| ++.   +. .+|  .++ +|+.+++.+|....++
T Consensus       332 ~~-l~~---I~~~aF--~~~-~L~~l~l~~n~~~~l~  361 (401)
T 4fdw_A          332 AN-VTQ---INFSAF--NNT-GIKEVKVEGTTPPQVF  361 (401)
T ss_dssp             TT-CCE---ECTTSS--SSS-CCCEEEECCSSCCBCC
T ss_pred             cc-ccE---EcHHhC--CCC-CCCEEEEcCCCCcccc
Confidence            32 333   22 223  444 5666666655544433

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.24  E-value=3.7e-14  Score=116.12  Aligned_cols=132  Identities=19%  Similarity=0.236  Sum_probs=102.2

Q ss_pred             cCCcceEEeecCCcCc-------CCCccccCcccccEEEecCCCCCCchhhhccCCCcEEEecCCCCccccccccCCCCc
Q 037732          109 RMIQVRVINFSYMNLL-------SLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLL  181 (350)
Q Consensus       109 ~l~~L~~L~l~~~~~~-------~lp~~l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L  181 (350)
                      ....++.++++.+.+.       .+|..+..+++|++|++++|.+..++.+..+++|++|++++|.+..+|..+..+++|
T Consensus        16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L   95 (198)
T 1ds9_A           16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTL   95 (198)
T ss_dssp             HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECSCSSHHHHHHHC
T ss_pred             hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcccccchhhcCCcC
Confidence            4455555555554443       344588899999999999999888448899999999999999999998878888999


Q ss_pred             cEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCCCC
Q 037732          182 RLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNT  249 (350)
Q Consensus       182 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  249 (350)
                      +.|++++| .+..+|.  +..+++|++|++++|.+..++.      ...+..+++|+.|++++|.+..
T Consensus        96 ~~L~L~~N-~l~~l~~--~~~l~~L~~L~l~~N~i~~~~~------~~~l~~l~~L~~L~l~~N~l~~  154 (198)
T 1ds9_A           96 EELWISYN-QIASLSG--IEKLVNLRVLYMSNNKITNWGE------IDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             SEEEEEEE-ECCCHHH--HHHHHHSSEEEESEEECCCHHH------HHHHTTTTTCSEEEECSCHHHH
T ss_pred             CEEECcCC-cCCcCCc--cccCCCCCEEECCCCcCCchhH------HHHHhcCCCCCEEEecCCcccc
Confidence            99999984 4555663  6788999999999888754321      1357788899999999987643

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.24  E-value=4.7e-11  Score=95.30  Aligned_cols=101  Identities=28%  Similarity=0.451  Sum_probs=71.8

Q ss_pred             eEEeecCCcCcCCCccccCcccccEEEecCCCCCC--chhhhccCCCcEEEecCCCCcccccc-ccCCCCccEEeccCCC
Q 037732          114 RVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLD--ITVIRDLKKLAVLCLRGSDIKRLPVE-VGELTLLRLLDLRDCM  190 (350)
Q Consensus       114 ~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~l~~~~~~~lp~~-l~~l~~L~~L~l~~~~  190 (350)
                      +.++++++.+..+|..+.  ++|++|++++|.+..  +..+..+++|++|++++|++..+|.. +..+++|++|++++ +
T Consensus        15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~-N   91 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND-N   91 (174)
T ss_dssp             SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-S
T ss_pred             cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC-C
Confidence            567777777777777554  677888888877776  45677777788888877777777765 46777777777777 4


Q ss_pred             CCCccCcchhCCCCCCcEEEcCCCCCC
Q 037732          191 ELEVIPPNILSNLSHLEELYMGPRSFD  217 (350)
Q Consensus       191 ~~~~~~~~~l~~l~~L~~L~l~~~~~~  217 (350)
                      .+..++...+..+++|++|++++|.+.
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCcc
Confidence            455566554667777777777777663

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.24  E-value=5.2e-11  Score=94.71  Aligned_cols=102  Identities=27%  Similarity=0.413  Sum_probs=73.7

Q ss_pred             ceEEeecCCcCcCCCccccCcccccEEEecCCCCCC--chhhhccCCCcEEEecCCCCcccccc-ccCCCCccEEeccCC
Q 037732          113 VRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLD--ITVIRDLKKLAVLCLRGSDIKRLPVE-VGELTLLRLLDLRDC  189 (350)
Q Consensus       113 L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~l~~~~~~~lp~~-l~~l~~L~~L~l~~~  189 (350)
                      .+.++++++.++.+|..+.  .+|++|++++|.++.  +..+..+++|++|++++|++..+|.. +..+++|++|++++ 
T Consensus        11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~-   87 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND-   87 (170)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-
T ss_pred             CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC-
Confidence            4567777777777776553  677888888887777  45577778888888888877777764 46777888888877 


Q ss_pred             CCCCccCcchhCCCCCCcEEEcCCCCCC
Q 037732          190 MELEVIPPNILSNLSHLEELYMGPRSFD  217 (350)
Q Consensus       190 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~  217 (350)
                      +.+..++...+.++++|++|++++|.+.
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            4455566554677778888888777663

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.23  E-value=7.9e-12  Score=110.56  Aligned_cols=249  Identities=12%  Similarity=0.113  Sum_probs=146.6

Q ss_pred             CCCccEEEecccCCccccccChHHHhc-CCcceEEeecCCcCc--CCCccccCcccccEEEecCCCCCCchhhhc-----
Q 037732           83 CPQLELLFICADKESSSLTIPNKFFER-MIQVRVINFSYMNLL--SLPSSLGLLSNLQNLSLYNCKLLDITVIRD-----  154 (350)
Q Consensus        83 ~~~L~~L~l~~~~~~~~~~~~~~~~~~-l~~L~~L~l~~~~~~--~lp~~l~~l~~L~~L~l~~~~l~~~~~l~~-----  154 (350)
                      ..+++.|.+  ++ ......... +.. +++|+.|+|++|.+.  ..+.  +.++.++.+.+..+.+.. ..+..     
T Consensus        24 ~~~l~~L~l--~g-~i~~~~~~~-l~~~l~~L~~LdLs~n~i~~~~~~~--~~~~~~~~~~~~~~~I~~-~aF~~~~~~~   96 (329)
T 3sb4_A           24 ANSITHLTL--TG-KLNAEDFRH-LRDEFPSLKVLDISNAEIKMYSGKA--GTYPNGKFYIYMANFVPA-YAFSNVVNGV   96 (329)
T ss_dssp             HHHCSEEEE--EE-EECHHHHHH-HHHSCTTCCEEEEEEEEECCEEESS--SSSGGGCCEEECTTEECT-TTTEEEETTE
T ss_pred             hCceeEEEE--ec-cccHHHHHH-HHHhhccCeEEecCcceeEEecCcc--ccccccccccccccccCH-HHhccccccc
Confidence            456777777  22 211111112 233 778888888888876  2221  122224445444443221 33445     


Q ss_pred             ---cCCCcEEEecCCCCccccc-cccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCC----Ccchh-----
Q 037732          155 ---LKKLAVLCLRGSDIKRLPV-EVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSF----DKWEV-----  221 (350)
Q Consensus       155 ---l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~----~~~~~-----  221 (350)
                         +.+|+.+++.. .+..++. .+..|++|+.+++.. +.+..++...+..+.++..+.......    ..+..     
T Consensus        97 ~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~-n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~  174 (329)
T 3sb4_A           97 TKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRK-KTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIE  174 (329)
T ss_dssp             EEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCC-SSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEE
T ss_pred             ccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCC-CCccccchhhhcCCCceEEecCcchhhhhcccccccccccc
Confidence               78888888877 6776665 477788888888877 444455655566666666665443110    00000     


Q ss_pred             ----------hhccccccch----hhcCCCceeEEEecCCCCCCccc--ccCCccEEEEEEcCcc---c-ccccCccceE
Q 037732          222 ----------EVEGVKNASL----HELKHLISLELQIQDVNTFPRGL--FLEKLETFKILIGGVW---G-WEYADIWCRE  281 (350)
Q Consensus       222 ----------~~~~~~~~~l----~~l~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~---~-~~~~~~~L~~  281 (350)
                                ...+.++..+    -...++..+.+.++-...-...+  .+++|+.+++..+.+.   . .+..|.+|+.
T Consensus       175 ~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~  254 (329)
T 3sb4_A          175 GEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLK  254 (329)
T ss_dssp             SCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCE
T ss_pred             ccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCE
Confidence                      0000001000    11344555555554211101111  2689999999654432   2 5889999999


Q ss_pred             EEEeCCCcccchHHHHHHhcccc-eeeeccccccchhhhh-hhhcccCcCcceEEEEeCccceeccCC
Q 037732          282 FKIDLDSKIRLKDGLILKLEGIE-DLWLSYLEEQDVNYFV-NELVKVGPSQLKHLYIRGSHLTLNPAE  347 (350)
Q Consensus       282 L~l~~~~~~~~~~~~~~~~~~L~-~L~L~~n~l~~~~~~~-~~l~~~~~~~L~~L~l~~~~~~~~p~~  347 (350)
                      +++..+ ...++...+..+++|+ .+++.+ .++.   ++ ..|  .++++|+.+++.++.++.+++.
T Consensus       255 l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~---I~~~aF--~~c~~L~~l~l~~n~i~~I~~~  315 (329)
T 3sb4_A          255 IKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTA---IEFGAF--MGCDNLRYVLATGDKITTLGDE  315 (329)
T ss_dssp             EECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCE---ECTTTT--TTCTTEEEEEECSSCCCEECTT
T ss_pred             EECCcc-cceehHHHhhCChhccEEEEEcc-cceE---Echhhh--hCCccCCEEEeCCCccCccchh
Confidence            999987 6667776666789999 999987 6666   43 455  7899999999999999998874

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.13  E-value=3.6e-10  Score=102.35  Aligned_cols=235  Identities=13%  Similarity=0.117  Sum_probs=166.6

Q ss_pred             CCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCC-ccccCcccccEEEecCCCCCC-chhhhccCCCcEE
Q 037732           84 PQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLP-SSLGLLSNLQNLSLYNCKLLD-ITVIRDLKKLAVL  161 (350)
Q Consensus        84 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L  161 (350)
                      .+|+.+.+  .. . ...++...|.++ +|+.+.+.. .+..++ ..|..+.+|+.+++..+.+.. +.......+|+.+
T Consensus       135 ~~L~~i~l--~~-~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l  208 (401)
T 4fdw_A          135 SQIAKVVL--NE-G-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEV  208 (401)
T ss_dssp             CCCSEEEC--CT-T-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEE
T ss_pred             CCccEEEe--CC-C-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEE
Confidence            37888888  32 2 566776667664 699999986 555543 578899999999999988877 4333346899999


Q ss_pred             EecCCCCccccc-cccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCcee
Q 037732          162 CLRGSDIKRLPV-EVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISL  240 (350)
Q Consensus       162 ~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L  240 (350)
                      .+..+ +..++. .+.+|++|+.+.+..  .+..++...+.+ .+|+.+.+. +.+.       .....+|.++++|+.+
T Consensus       209 ~lp~~-l~~I~~~aF~~~~~L~~l~l~~--~l~~I~~~aF~~-~~L~~i~lp-~~i~-------~I~~~aF~~c~~L~~l  276 (401)
T 4fdw_A          209 LLPVT-LKEIGSQAFLKTSQLKTIEIPE--NVSTIGQEAFRE-SGITTVKLP-NGVT-------NIASRAFYYCPELAEV  276 (401)
T ss_dssp             ECCTT-CCEECTTTTTTCTTCCCEECCT--TCCEECTTTTTT-CCCSEEEEE-TTCC-------EECTTTTTTCTTCCEE
T ss_pred             EeCCc-hheehhhHhhCCCCCCEEecCC--CccCcccccccc-CCccEEEeC-CCcc-------EEChhHhhCCCCCCEE
Confidence            99754 776665 578899999999976  356677665666 789999885 4442       2334678899999999


Q ss_pred             EEEecCCC-----CCCccc--ccCCccEEEEEEcC--c-ccccccCccceEEEEeCCCcccchHHHHHHhcccceeeecc
Q 037732          241 ELQIQDVN-----TFPRGL--FLEKLETFKILIGG--V-WGWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSY  310 (350)
Q Consensus       241 ~l~~~~~~-----~l~~~~--~~~~L~~L~l~~~~--~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~  310 (350)
                      .+.++...     .++...  .+.+|+.+.+...-  + ...+..|.+|+.+.+..+ ...++...+..+ +|+.+++.+
T Consensus       277 ~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~  354 (401)
T 4fdw_A          277 TTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEG  354 (401)
T ss_dssp             EEESSCCCCCTTCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECC
T ss_pred             EeCCccccCCcccEECHHHhhCCccCCeEEeCCceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcC
Confidence            99887654     455444  57889988885221  1 125778899999999665 444544444556 999999999


Q ss_pred             ccccchhhhhhhhcccCcC-cceEEEEeCccce
Q 037732          311 LEEQDVNYFVNELVKVGPS-QLKHLYIRGSHLT  342 (350)
Q Consensus       311 n~l~~~~~~~~~l~~~~~~-~L~~L~l~~~~~~  342 (350)
                      |....+  ....+  .+++ .++.|++-.+.+.
T Consensus       355 n~~~~l--~~~~F--~~~~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          355 TTPPQV--FEKVW--YGFPDDITVIRVPAESVE  383 (401)
T ss_dssp             SSCCBC--CCSSC--CCSCTTCCEEEECGGGHH
T ss_pred             CCCccc--ccccc--cCCCCCccEEEeCHHHHH
Confidence            988773  22334  4564 7888988776543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.10  E-value=4.9e-10  Score=89.34  Aligned_cols=108  Identities=20%  Similarity=0.263  Sum_probs=85.3

Q ss_pred             ccEEEecCCCCCC-chhhhccCCCcEEEecCCCCccc-cccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCC
Q 037732          136 LQNLSLYNCKLLD-ITVIRDLKKLAVLCLRGSDIKRL-PVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGP  213 (350)
Q Consensus       136 L~~L~l~~~~l~~-~~~l~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~  213 (350)
                      -+.++++++.+.. |..+.  .+|++|++++|.+..+ |..+.++++|+.|++++ +.+..+|...+.++++|++|++++
T Consensus        14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNS-NKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCC-CCCCccChhHhCCcchhhEEECCC
Confidence            4788999998877 65554  8899999999999877 45688899999999998 566777776568899999999999


Q ss_pred             CCCCcchhhhccccccchhhcCCCceeEEEecCCCCCCcc
Q 037732          214 RSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRG  253 (350)
Q Consensus       214 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~  253 (350)
                      |.+.       +..+..+..+++|+.|++++|.+...+..
T Consensus        91 N~l~-------~l~~~~~~~l~~L~~L~L~~N~~~c~~~~  123 (174)
T 2r9u_A           91 NHLK-------SIPRGAFDNLKSLTHIYLYNNPWDCECRD  123 (174)
T ss_dssp             SCCC-------CCCTTTTTTCTTCSEEECCSSCBCTTBGG
T ss_pred             Cccc-------eeCHHHhccccCCCEEEeCCCCccccccc
Confidence            8883       22334588889999999999987765543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.09  E-value=4.7e-10  Score=89.10  Aligned_cols=107  Identities=23%  Similarity=0.295  Sum_probs=83.0

Q ss_pred             cccEEEecCCCCCC-chhhhccCCCcEEEecCCCCccc-cccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcC
Q 037732          135 NLQNLSLYNCKLLD-ITVIRDLKKLAVLCLRGSDIKRL-PVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMG  212 (350)
Q Consensus       135 ~L~~L~l~~~~l~~-~~~l~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~  212 (350)
                      ..+.++++++.++. |..+  ..+|++|++++|.++.+ |..+..+++|++|++++ +.+..++...+.++++|++|+++
T Consensus        10 ~~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDN-NQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             ETTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCC-CCcCccChhhccCCCCCCEEECC
Confidence            46788999988888 5554  37889999999988877 44688889999999988 45667777657888999999999


Q ss_pred             CCCCCcchhhhccccccchhhcCCCceeEEEecCCCCCC
Q 037732          213 PRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFP  251 (350)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~  251 (350)
                      +|.+.       +..+..+..+++|+.|++++|.+...+
T Consensus        87 ~N~l~-------~~~~~~~~~l~~L~~L~L~~N~~~c~c  118 (170)
T 3g39_A           87 DNQLK-------SIPRGAFDNLKSLTHIWLLNNPWDCAC  118 (170)
T ss_dssp             SSCCC-------CCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred             CCccC-------EeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence            88873       333456888888999999888765443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.02  E-value=2e-11  Score=109.48  Aligned_cols=106  Identities=14%  Similarity=0.174  Sum_probs=51.9

Q ss_pred             CCcceEEeecCCcCcC-----CCcccc-CcccccEEEecCCCCCC--chhh-hccCCCcEEEecCCCCccc-----cccc
Q 037732          110 MIQVRVINFSYMNLLS-----LPSSLG-LLSNLQNLSLYNCKLLD--ITVI-RDLKKLAVLCLRGSDIKRL-----PVEV  175 (350)
Q Consensus       110 l~~L~~L~l~~~~~~~-----lp~~l~-~l~~L~~L~l~~~~l~~--~~~l-~~l~~L~~L~l~~~~~~~l-----p~~l  175 (350)
                      ++.++.|++++|.++.     +...+. ..++|++|++++|.+..  ...+ ..+.+|+.|++++|.+...     ...+
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            4567777777776653     222222 12567777777776654  2222 2345666667766666521     1112


Q ss_pred             -cCCCCccEEeccCCCCCC----ccCcchhCCCCCCcEEEcCCCCC
Q 037732          176 -GELTLLRLLDLRDCMELE----VIPPNILSNLSHLEELYMGPRSF  216 (350)
Q Consensus       176 -~~l~~L~~L~l~~~~~~~----~~~~~~l~~l~~L~~L~l~~~~~  216 (350)
                       ...++|++|++++|....    .++.. +..+++|++|++++|.+
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~-L~~~~~L~~L~Ls~N~l  195 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEG-LAGNTSVTHLSLLHTGL  195 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHH-HHTCSSCCEEECTTSSC
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHH-HhcCCCcCEEeCCCCCC
Confidence             134455555555533211    11211 23445555555555544

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.99  E-value=9.4e-11  Score=105.18  Aligned_cols=160  Identities=15%  Similarity=0.080  Sum_probs=112.8

Q ss_pred             CCccEEEecccCCccccccChHHHh----cCCcceEEeecCCcCcC--CCccccCcccccEEEecCCCCCC--chhh---
Q 037732           84 PQLELLFICADKESSSLTIPNKFFE----RMIQVRVINFSYMNLLS--LPSSLGLLSNLQNLSLYNCKLLD--ITVI---  152 (350)
Q Consensus        84 ~~L~~L~l~~~~~~~~~~~~~~~~~----~l~~L~~L~l~~~~~~~--lp~~l~~l~~L~~L~l~~~~l~~--~~~l---  152 (350)
                      +.++.|++  +.+.........+..    ..++|+.|++++|.++.  ...-...+.+|++|++++|.+.+  ...+   
T Consensus        72 ~~L~~L~L--s~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~  149 (372)
T 3un9_A           72 SSLRQLNL--AGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL  149 (372)
T ss_dssp             TTCCEEEC--TTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred             hhCCEEEe--cCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence            57889999  555543322222211    23699999999998863  22222346789999999999877  3443   


Q ss_pred             --hccCCCcEEEecCCCCcc-----ccccccCCCCccEEeccCCCCCC----ccCcchhCCCCCCcEEEcCCCCCCcchh
Q 037732          153 --RDLKKLAVLCLRGSDIKR-----LPVEVGELTLLRLLDLRDCMELE----VIPPNILSNLSHLEELYMGPRSFDKWEV  221 (350)
Q Consensus       153 --~~l~~L~~L~l~~~~~~~-----lp~~l~~l~~L~~L~l~~~~~~~----~~~~~~l~~l~~L~~L~l~~~~~~~~~~  221 (350)
                        ...++|++|++++|.++.     ++..+..+++|++|++++|....    .++.. +...++|++|++++|.+.... 
T Consensus       150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~-L~~~~~L~~L~Ls~N~i~~~g-  227 (372)
T 3un9_A          150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQ-LDRNRQLQELNVAYNGAGDTA-  227 (372)
T ss_dssp             HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHH-GGGCSCCCEEECCSSCCCHHH-
T ss_pred             HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHH-HhcCCCcCeEECCCCCCCHHH-
Confidence              246789999999998863     55567788999999999965322    12333 567789999999999885322 


Q ss_pred             hhccccccchhhcCCCceeEEEecCCCC
Q 037732          222 EVEGVKNASLHELKHLISLELQIQDVNT  249 (350)
Q Consensus       222 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~  249 (350)
                        ...++..+...++|+.|++++|.++.
T Consensus       228 --~~~l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          228 --ALALARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             --HHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred             --HHHHHHHHHhCCCCCEEeccCCCCCH
Confidence              23455667788999999999998764

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.90  E-value=5.7e-09  Score=92.75  Aligned_cols=90  Identities=17%  Similarity=0.095  Sum_probs=57.2

Q ss_pred             cccccChHHHhcCCcceEEeecC-CcCcCCC-ccccCcccccEEEecCCCCCC--chhhhccCCCcEEEecCCCCccccc
Q 037732           98 SSLTIPNKFFERMIQVRVINFSY-MNLLSLP-SSLGLLSNLQNLSLYNCKLLD--ITVIRDLKKLAVLCLRGSDIKRLPV  173 (350)
Q Consensus        98 ~~~~~~~~~~~~l~~L~~L~l~~-~~~~~lp-~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~l~~~~~~~lp~  173 (350)
                      ....+|.  +..+.+|+.|+|++ |.+..+| ..|..+++|++|+|++|.++.  +..+..+++|++|+|++|++..+|.
T Consensus        20 ~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~   97 (347)
T 2ifg_A           20 ALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSW   97 (347)
T ss_dssp             CCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCS
T ss_pred             CCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCH
Confidence            4555666  34666677777775 6666654 356677777777777777666  3456667777777777777776665


Q ss_pred             cccCCCCccEEeccCC
Q 037732          174 EVGELTLLRLLDLRDC  189 (350)
Q Consensus       174 ~l~~l~~L~~L~l~~~  189 (350)
                      .+.....|+.|++.+|
T Consensus        98 ~~~~~~~L~~l~l~~N  113 (347)
T 2ifg_A           98 KTVQGLSLQELVLSGN  113 (347)
T ss_dssp             TTTCSCCCCEEECCSS
T ss_pred             HHcccCCceEEEeeCC
Confidence            4433333677776664

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.74  E-value=5.8e-08  Score=86.41  Aligned_cols=40  Identities=15%  Similarity=0.042  Sum_probs=21.0

Q ss_pred             cCccceEEEEeCCCccc-----chHHHHHHhcccceeeeccccccc
Q 037732          275 ADIWCREFKIDLDSKIR-----LKDGLILKLEGIEDLWLSYLEEQD  315 (350)
Q Consensus       275 ~~~~L~~L~l~~~~~~~-----~~~~~~~~~~~L~~L~L~~n~l~~  315 (350)
                      .+++|++|+++.|....     ++.++ ..+++|+.|+|++|.+++
T Consensus       277 ~~~~L~~LdLs~n~L~d~G~~~L~~~L-~~l~~L~~L~L~~n~i~d  321 (362)
T 2ra8_A          277 ILPQLETMDISAGVLTDEGARLLLDHV-DKIKHLKFINMKYNYLSD  321 (362)
T ss_dssp             SGGGCSEEECCSSCCBHHHHHHHHTTH-HHHTTCSEEECCSBBCCH
T ss_pred             cCCCCCEEECCCCCCChHHHHHHHhhc-ccCCcceEEECCCCcCCH
Confidence            35566666666554332     11122 234666666666666554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.73  E-value=3.3e-08  Score=87.78  Aligned_cols=102  Identities=17%  Similarity=0.231  Sum_probs=70.3

Q ss_pred             EEEecCC-CCCC-chhhhccCCCcEEEecC-CCCccccc-cccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCC
Q 037732          138 NLSLYNC-KLLD-ITVIRDLKKLAVLCLRG-SDIKRLPV-EVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGP  213 (350)
Q Consensus       138 ~L~l~~~-~l~~-~~~l~~l~~L~~L~l~~-~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~  213 (350)
                      .++.+++ .++. |. +..+.+|+.|++++ |.+..+|. .+..+++|+.|++++| .+..+++..+.++++|+.|++++
T Consensus        12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCC
Confidence            4567776 6777 55 77788888888885 78877764 5778888888888874 45556655467888888888888


Q ss_pred             CCCCcchhhhccccccchhhcCCCceeEEEecCCCC
Q 037732          214 RSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNT  249 (350)
Q Consensus       214 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  249 (350)
                      |.+...+       +..+..++ |+.|++.+|.+..
T Consensus        90 N~l~~~~-------~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           90 NALESLS-------WKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             SCCSCCC-------STTTCSCC-CCEEECCSSCCCC
T ss_pred             CccceeC-------HHHcccCC-ceEEEeeCCCccC
Confidence            8773322       23334444 7888888777653

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.67  E-value=6.8e-08  Score=85.97  Aligned_cols=137  Identities=20%  Similarity=0.220  Sum_probs=60.9

Q ss_pred             HHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCC--chhhh--ccCCCcEEEecCC--C------Cccccc
Q 037732          106 FFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLD--ITVIR--DLKKLAVLCLRGS--D------IKRLPV  173 (350)
Q Consensus       106 ~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~--~~~l~--~l~~L~~L~l~~~--~------~~~lp~  173 (350)
                      +...+++|+.|.++++.-..++. + .+++|+.|++..|.+..  ...+.  .+++|++|+++.+  .      +..+..
T Consensus       167 ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~  244 (362)
T 2ra8_A          167 VLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP  244 (362)
T ss_dssp             HHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred             HHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH
Confidence            34455666666666552122333 2 25566666666655544  33333  4566666665421  1      111111


Q ss_pred             cc--cCCCCccEEeccCCCCCCccCcch--hCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCC
Q 037732          174 EV--GELTLLRLLDLRDCMELEVIPPNI--LSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDV  247 (350)
Q Consensus       174 ~l--~~l~~L~~L~l~~~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  247 (350)
                      .+  ..+++|++|++.+|......+..+  ...+++|++|+++.|.+....   ...++..+..+++|+.|+++.|.+
T Consensus       245 ~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G---~~~L~~~L~~l~~L~~L~L~~n~i  319 (362)
T 2ra8_A          245 LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEG---ARLLLDHVDKIKHLKFINMKYNYL  319 (362)
T ss_dssp             GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHH---HHHHHTTHHHHTTCSEEECCSBBC
T ss_pred             HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHH---HHHHHhhcccCCcceEEECCCCcC
Confidence            11  234556666665543322111110  123455666666555442110   112233344555556665555543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.38  E-value=1.7e-06  Score=78.17  Aligned_cols=246  Identities=13%  Similarity=0.073  Sum_probs=132.9

Q ss_pred             ccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCC-ccccCcccccEEEecCC------------C
Q 037732           79 EVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLP-SSLGLLSNLQNLSLYNC------------K  145 (350)
Q Consensus        79 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~l~~l~~L~~L~l~~~------------~  145 (350)
                      .+.++++|+.+.+  .  .....++...|.+|.+|+.+++..+ +..++ ..|..+..|+.+.+..+            .
T Consensus        66 AF~~c~~L~~i~l--p--~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~  140 (394)
T 4fs7_A           66 AFQGCRKVTEIKI--P--STVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCD  140 (394)
T ss_dssp             TTTTCTTEEEEEC--C--TTCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCC
T ss_pred             HhhCCCCceEEEe--C--CCccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeeccc
Confidence            4557888999988  3  2356677666888899999988754 33332 24555555555444321            0


Q ss_pred             C---------CC--chhhhccCCCcEEEecCCCCccccc-cccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCC
Q 037732          146 L---------LD--ITVIRDLKKLAVLCLRGSDIKRLPV-EVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGP  213 (350)
Q Consensus       146 l---------~~--~~~l~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~  213 (350)
                      .         ..  ...+..+.+|+.+.+..+ +..++. .+..+.+|+.+.+..  .+..++...+.++..|+.+.+..
T Consensus       141 ~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~--~~~~I~~~~F~~~~~L~~i~~~~  217 (394)
T 4fs7_A          141 FKEITIPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPR--NLKIIRDYCFAECILLENMEFPN  217 (394)
T ss_dssp             CSEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCT--TCCEECTTTTTTCTTCCBCCCCT
T ss_pred             ccccccCccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCC--CceEeCchhhccccccceeecCC
Confidence            0         00  134556677777777554 333433 456677777776654  23444444355555555554432


Q ss_pred             CCCCc--------------chhhhccccccchhhcCCCceeEEEecCCC--------------------CCCccc--ccC
Q 037732          214 RSFDK--------------WEVEVEGVKNASLHELKHLISLELQIQDVN--------------------TFPRGL--FLE  257 (350)
Q Consensus       214 ~~~~~--------------~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~--------------------~l~~~~--~~~  257 (350)
                      +....              .+..+.......+..+..++.+.+..+...                    .++...  .+.
T Consensus       218 ~~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~  297 (394)
T 4fs7_A          218 SLYYLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCS  297 (394)
T ss_dssp             TCCEECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECTTTTTTCT
T ss_pred             CceEeehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcceeeccccccccccceeccCceeeccccccccc
Confidence            21100              000000011123445556666555443210                    112222  356


Q ss_pred             CccEEEEEEcC--c-ccccccCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccchhhhh-hhhcccCcCcceE
Q 037732          258 KLETFKILIGG--V-WGWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFV-NELVKVGPSQLKH  333 (350)
Q Consensus       258 ~L~~L~l~~~~--~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-~~l~~~~~~~L~~  333 (350)
                      +|+.+.+..+-  + ...+..|.+|+.+.+..+ ...++...+..+.+|+.+.+..+ ++.   ++ .+|  .++++|+.
T Consensus       298 ~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~---I~~~aF--~~C~~L~~  370 (394)
T 4fs7_A          298 SLTEVKLLDSVKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRK---IGANAF--QGCINLKK  370 (394)
T ss_dssp             TCCEEEECTTCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCE---ECTTTB--TTCTTCCE
T ss_pred             cccccccccccceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccE---ehHHHh--hCCCCCCE
Confidence            67776663221  1 124667888888887643 44455444455788888888754 555   33 344  67888999


Q ss_pred             EEEeCc
Q 037732          334 LYIRGS  339 (350)
Q Consensus       334 L~l~~~  339 (350)
                      +++..+
T Consensus       371 i~lp~~  376 (394)
T 4fs7_A          371 VELPKR  376 (394)
T ss_dssp             EEEEGG
T ss_pred             EEECCC
Confidence            888654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.32  E-value=3.1e-07  Score=72.26  Aligned_cols=82  Identities=15%  Similarity=0.281  Sum_probs=50.0

Q ss_pred             CcceEEeecCCcCcC-CCccccCcccccEEEecCCC-CCC--chhhhcc----CCCcEEEecCC-CCcc--ccccccCCC
Q 037732          111 IQVRVINFSYMNLLS-LPSSLGLLSNLQNLSLYNCK-LLD--ITVIRDL----KKLAVLCLRGS-DIKR--LPVEVGELT  179 (350)
Q Consensus       111 ~~L~~L~l~~~~~~~-lp~~l~~l~~L~~L~l~~~~-l~~--~~~l~~l----~~L~~L~l~~~-~~~~--lp~~l~~l~  179 (350)
                      ..|+.|++++|.++. --..+..+++|+.|++++|. +++  +..++.+    ++|++|++++| +++.  + ..+.+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-~~L~~~~  139 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI-IALHHFR  139 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH-HHGGGCT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH-HHHhcCC
Confidence            357777777777663 22345677777777777774 555  5555553    35777777766 4552  2 1345566


Q ss_pred             CccEEeccCCCCCC
Q 037732          180 LLRLLDLRDCMELE  193 (350)
Q Consensus       180 ~L~~L~l~~~~~~~  193 (350)
                      +|++|++++|..++
T Consensus       140 ~L~~L~L~~c~~It  153 (176)
T 3e4g_A          140 NLKYLFLSDLPGVK  153 (176)
T ss_dssp             TCCEEEEESCTTCC
T ss_pred             CCCEEECCCCCCCC
Confidence            66666666665544

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.31  E-value=4.7e-07  Score=72.69  Aligned_cols=109  Identities=14%  Similarity=0.054  Sum_probs=63.5

Q ss_pred             HhcCCcceEEeecCC-cCcC-----CCccccCcccccEEEecCCCCCC--c----hhhhccCCCcEEEecCCCCcc----
Q 037732          107 FERMIQVRVINFSYM-NLLS-----LPSSLGLLSNLQNLSLYNCKLLD--I----TVIRDLKKLAVLCLRGSDIKR----  170 (350)
Q Consensus       107 ~~~l~~L~~L~l~~~-~~~~-----lp~~l~~l~~L~~L~l~~~~l~~--~----~~l~~l~~L~~L~l~~~~~~~----  170 (350)
                      +...+.|+.|++++| .+..     +...+...++|++|++++|.+.+  .    ..+...++|++|++++|.+..    
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~  111 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL  111 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence            445677777777777 6652     44456666778888888877765  1    344455677777777777662    


Q ss_pred             -ccccccCCCCccEEec--cCCCCCCc----cCcchhCCCCCCcEEEcCCCCC
Q 037732          171 -LPVEVGELTLLRLLDL--RDCMELEV----IPPNILSNLSHLEELYMGPRSF  216 (350)
Q Consensus       171 -lp~~l~~l~~L~~L~l--~~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~  216 (350)
                       +...+...++|++|++  ++|.....    +... +...++|++|++++|.+
T Consensus       112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~-L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANM-LEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHH-HHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHH-HHhCCCcCEEeccCCCC
Confidence             4445555566666666  44222111    1111 33445566666655544

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.29  E-value=3.4e-06  Score=76.18  Aligned_cols=97  Identities=7%  Similarity=-0.003  Sum_probs=64.5

Q ss_pred             chhhcCCCceeEEEecCCCCCCccc--ccCCccEEEEEEc--Cc-ccccccCccceEEEEeCCCcccchHHHHHHhcccc
Q 037732          230 SLHELKHLISLELQIQDVNTFPRGL--FLEKLETFKILIG--GV-WGWEYADIWCREFKIDLDSKIRLKDGLILKLEGIE  304 (350)
Q Consensus       230 ~l~~l~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~--~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  304 (350)
                      .+..+.+|+.+.+..+ +..++...  .+.+|+.+.+...  .+ ...+.+|.+|+.+.+..+ ...++...+..|++|+
T Consensus       292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~  369 (394)
T 4fs7_A          292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYLVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLK  369 (394)
T ss_dssp             TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCC
T ss_pred             cccccccccccccccc-cceechhhhcCCCCCCEEEeCCcccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCC
Confidence            4667788888887543 55555554  4678888887422  11 125778999999988765 4455554555689999


Q ss_pred             eeeeccccccchhhhhhhhcccCcCcceEE
Q 037732          305 DLWLSYLEEQDVNYFVNELVKVGPSQLKHL  334 (350)
Q Consensus       305 ~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L  334 (350)
                      .+++..+ ++.   +...+  ..+++|+.+
T Consensus       370 ~i~lp~~-~~~---~~~~F--~~c~~L~~I  393 (394)
T 4fs7_A          370 KVELPKR-LEQ---YRYDF--EDTTKFKWI  393 (394)
T ss_dssp             EEEEEGG-GGG---GGGGB--CTTCEEEEE
T ss_pred             EEEECCC-CEE---hhhee--cCCCCCcEE
Confidence            9999753 333   43445  778888765

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.26  E-value=2e-05  Score=71.11  Aligned_cols=75  Identities=9%  Similarity=0.183  Sum_probs=37.1

Q ss_pred             CccEEEecccCCccccccChHHHhcCCcceEEeecCCc---CcCCC-ccccCcccccEEEecCCCCCC--chhhhccCCC
Q 037732           85 QLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMN---LLSLP-SSLGLLSNLQNLSLYNCKLLD--ITVIRDLKKL  158 (350)
Q Consensus        85 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---~~~lp-~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L  158 (350)
                      .|+.+.+  .  .....+....|.+|.+|+.+.+..+.   ++.++ ..|..+..|+.+.+..+ +..  ...+..+.+|
T Consensus        65 ~L~sI~i--P--~svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L  139 (394)
T 4gt6_A           65 VLTSVQI--P--DTVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEEL  139 (394)
T ss_dssp             CCCEEEE--C--TTCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTC
T ss_pred             cCEEEEE--C--CCeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccc
Confidence            4777777  2  22455555556677777777775542   33322 23445555555444332 111  2333444455


Q ss_pred             cEEEec
Q 037732          159 AVLCLR  164 (350)
Q Consensus       159 ~~L~l~  164 (350)
                      +.+.+.
T Consensus       140 ~~i~lp  145 (394)
T 4gt6_A          140 DTVTIP  145 (394)
T ss_dssp             CEEECC
T ss_pred             cccccc
Confidence            555443

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.25  E-value=4.6e-07  Score=72.71  Aligned_cols=119  Identities=13%  Similarity=0.118  Sum_probs=85.6

Q ss_pred             CCccccCcccccEEEecCC-CCCC--c----hhhhccCCCcEEEecCCCCc-----cccccccCCCCccEEeccCCCCCC
Q 037732          126 LPSSLGLLSNLQNLSLYNC-KLLD--I----TVIRDLKKLAVLCLRGSDIK-----RLPVEVGELTLLRLLDLRDCMELE  193 (350)
Q Consensus       126 lp~~l~~l~~L~~L~l~~~-~l~~--~----~~l~~l~~L~~L~l~~~~~~-----~lp~~l~~l~~L~~L~l~~~~~~~  193 (350)
                      +...+...+.|++|++++| .+..  .    ..+...++|++|++++|.+.     .+...+...++|++|++++|....
T Consensus        28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~  107 (185)
T 1io0_A           28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG  107 (185)
T ss_dssp             HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred             HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence            3345667889999999999 8876  2    45566789999999999887     345566677889999999854332


Q ss_pred             c----cCcchhCCCCCCcEEEc--CCCCCCcchhhhccccccchhhcCCCceeEEEecCCC
Q 037732          194 V----IPPNILSNLSHLEELYM--GPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVN  248 (350)
Q Consensus       194 ~----~~~~~l~~l~~L~~L~l--~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  248 (350)
                      .    +... +...++|++|++  ++|.+....   ...+...+...+.|+.|++++|.++
T Consensus       108 ~g~~~l~~~-L~~n~~L~~L~L~~~~N~i~~~g---~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          108 SGILALVEA-LQSNTSLIELRIDNQSQPLGNNV---EMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHHHG-GGGCSSCCEEECCCCSSCCCHHH---HHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHH-HHhCCCceEEEecCCCCCCCHHH---HHHHHHHHHhCCCcCEEeccCCCCC
Confidence            2    3333 567788999999  777774321   2235566777788999999888753

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.18  E-value=1.8e-06  Score=67.85  Aligned_cols=83  Identities=11%  Similarity=0.137  Sum_probs=41.9

Q ss_pred             ccccEEEecCCCCCC--chhhhccCCCcEEEecCC-CCccc-cccccCC----CCccEEeccCCCCCCccCcchhCCCCC
Q 037732          134 SNLQNLSLYNCKLLD--ITVIRDLKKLAVLCLRGS-DIKRL-PVEVGEL----TLLRLLDLRDCMELEVIPPNILSNLSH  205 (350)
Q Consensus       134 ~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~l~~~-~~~~l-p~~l~~l----~~L~~L~l~~~~~~~~~~~~~l~~l~~  205 (350)
                      ..|+.||+++|.+++  ...+..+++|+.|++++| .++.- -..+..+    ++|++|++++|..++...-..+.++++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            356666666665554  455556666666666665 34411 1123332    346666666655444322212455566


Q ss_pred             CcEEEcCCCCC
Q 037732          206 LEELYMGPRSF  216 (350)
Q Consensus       206 L~~L~l~~~~~  216 (350)
                      |++|++++|..
T Consensus       141 L~~L~L~~c~~  151 (176)
T 3e4g_A          141 LKYLFLSDLPG  151 (176)
T ss_dssp             CCEEEEESCTT
T ss_pred             CCEEECCCCCC
Confidence            66666665543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.02  E-value=6.3e-06  Score=69.68  Aligned_cols=78  Identities=22%  Similarity=0.307  Sum_probs=42.0

Q ss_pred             CcccccEEEecCCCCCCc----hhhhccCCCcEEEecCCCCccccccccCCC--CccEEeccCCCCCCccC------cch
Q 037732          132 LLSNLQNLSLYNCKLLDI----TVIRDLKKLAVLCLRGSDIKRLPVEVGELT--LLRLLDLRDCMELEVIP------PNI  199 (350)
Q Consensus       132 ~l~~L~~L~l~~~~l~~~----~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~--~L~~L~l~~~~~~~~~~------~~~  199 (350)
                      .+++|+.|+|++|.++.+    ..+..+++|+.|++++|.+..+. .+..+.  +|++|++++|.....+|      ..+
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i  246 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI  246 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence            455666666666666552    23345666666666666665442 233333  66666666644333333      123


Q ss_pred             hCCCCCCcEEE
Q 037732          200 LSNLSHLEELY  210 (350)
Q Consensus       200 l~~l~~L~~L~  210 (350)
                      +..+++|+.|+
T Consensus       247 l~~~P~L~~LD  257 (267)
T 3rw6_A          247 RERFPKLLRLD  257 (267)
T ss_dssp             HHHCTTCCEES
T ss_pred             HHHCcccCeEC
Confidence            45666666664

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.01  E-value=4.4e-05  Score=68.77  Aligned_cols=106  Identities=13%  Similarity=0.085  Sum_probs=59.2

Q ss_pred             ccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCC-CccccCcccccEEEecCCCCCC-chhhhccC
Q 037732           79 EVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSL-PSSLGLLSNLQNLSLYNCKLLD-ITVIRDLK  156 (350)
Q Consensus        79 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~~~l~~-~~~l~~l~  156 (350)
                      .+.+|++|+.+.+..........+....|..+.+|+.+.+..+ +..+ ...|..+.+|+.+.+..+-..- ...+..+.
T Consensus        82 AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~~~~I~~~~F~~c~  160 (394)
T 4gt6_A           82 AFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEGVTSVADGMFSYCY  160 (394)
T ss_dssp             TTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCT
T ss_pred             HhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccccccceeeeecccceeccc
Confidence            3457899999988211112355666666777888887777654 3332 3356677778888775432111 24455666


Q ss_pred             CCcEEEecCCCCccccccccCCCCccEEec
Q 037732          157 KLAVLCLRGSDIKRLPVEVGELTLLRLLDL  186 (350)
Q Consensus       157 ~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l  186 (350)
                      +|+.+.+..+ +..+.........|+.+.+
T Consensus       161 ~L~~i~~~~~-~~~I~~~aF~~~~l~~i~i  189 (394)
T 4gt6_A          161 SLHTVTLPDS-VTAIEERAFTGTALTQIHI  189 (394)
T ss_dssp             TCCEEECCTT-CCEECTTTTTTCCCSEEEE
T ss_pred             ccccccccce-eeEeccccccccceeEEEE
Confidence            6766666543 3333332222344555544

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.79  E-value=2.8e-05  Score=65.68  Aligned_cols=87  Identities=23%  Similarity=0.286  Sum_probs=56.4

Q ss_pred             hccCCCcEEEecCCCCcccc---ccccCCCCccEEeccCCCCCCccCc-chhCCCCCCcEEEcCCCCCCcchhhhccccc
Q 037732          153 RDLKKLAVLCLRGSDIKRLP---VEVGELTLLRLLDLRDCMELEVIPP-NILSNLSHLEELYMGPRSFDKWEVEVEGVKN  228 (350)
Q Consensus       153 ~~l~~L~~L~l~~~~~~~lp---~~l~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~  228 (350)
                      .++++|+.|++++|++..++   ..+..+++|+.|++++| .+..+.. ..+..+ +|++|++.+|++..-.........
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHH
Confidence            46789999999999887554   45678899999999984 4444322 113334 899999999987320000001112


Q ss_pred             cchhhcCCCceeE
Q 037732          229 ASLHELKHLISLE  241 (350)
Q Consensus       229 ~~l~~l~~L~~L~  241 (350)
                      ..+..+++|+.|+
T Consensus       245 ~il~~~P~L~~LD  257 (267)
T 3rw6_A          245 AIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHCTTCCEES
T ss_pred             HHHHHCcccCeEC
Confidence            3467788888775

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.79  E-value=0.00084  Score=59.93  Aligned_cols=101  Identities=11%  Similarity=0.033  Sum_probs=56.9

Q ss_pred             chhhcCCCceeEEEecCCCCCCccc--ccCCccEEEEEEcC--c-ccccccCccceEEEEeCCCcccchHHHHHHhcccc
Q 037732          230 SLHELKHLISLELQIQDVNTFPRGL--FLEKLETFKILIGG--V-WGWEYADIWCREFKIDLDSKIRLKDGLILKLEGIE  304 (350)
Q Consensus       230 ~l~~l~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~--~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  304 (350)
                      .+.++..|+.+.+..+ +..+....  .+.+|+.+.+...-  + ...+..|.+|+.+.+..+....++...+..+.+|+
T Consensus       235 ~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~  313 (379)
T 4h09_A          235 AFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAKVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLS  313 (379)
T ss_dssp             TTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCCCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCC
T ss_pred             cccCCccceEEEcCCC-ccEeCccccceeehhccccccccceeccccccccccccccccccccccceehhhhhcCCCCCC
Confidence            3555666666666433 33333333  35666666663211  1 12456777788887777666666655555567788


Q ss_pred             eeeeccccccchhhhh-hhhcccCcCcceEEEEe
Q 037732          305 DLWLSYLEEQDVNYFV-NELVKVGPSQLKHLYIR  337 (350)
Q Consensus       305 ~L~L~~n~l~~~~~~~-~~l~~~~~~~L~~L~l~  337 (350)
                      .+.|.. .++.   +. .+|  .++.+|+.+.+-
T Consensus       314 ~i~lp~-~l~~---I~~~aF--~~C~~L~~i~ip  341 (379)
T 4h09_A          314 SVTLPT-ALKT---IQVYAF--KNCKALSTISYP  341 (379)
T ss_dssp             EEECCT-TCCE---ECTTTT--TTCTTCCCCCCC
T ss_pred             EEEcCc-cccE---EHHHHh--hCCCCCCEEEEC
Confidence            877754 2444   32 233  566677766653

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.53  E-value=0.0027  Score=56.61  Aligned_cols=247  Identities=10%  Similarity=0.027  Sum_probs=128.8

Q ss_pred             CCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCc-cccCcccccEEEecCCCCCC-chhhhccCCCc
Q 037732           82 ECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPS-SLGLLSNLQNLSLYNCKLLD-ITVIRDLKKLA  159 (350)
Q Consensus        82 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~  159 (350)
                      ...+++.+.+    ......++...|.+|.+|+.+.+..+ ++.++. .|..+ .|+.+.+..+ +.. ........+|+
T Consensus        44 ~~~~i~~v~i----p~~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~~L~  116 (379)
T 4h09_A           44 DRDRISEVRV----NSGITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGTDLD  116 (379)
T ss_dssp             GGGGCSEEEE----CTTEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTCCCS
T ss_pred             cccCCEEEEe----CCCccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccCCcc
Confidence            4467777777    23356666666778888888888654 444333 45444 5666655432 222 11111223677


Q ss_pred             EEEecCCCCccccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchh------------------
Q 037732          160 VLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEV------------------  221 (350)
Q Consensus       160 ~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~------------------  221 (350)
                      .+.+..+ +..+........++..+.+..  .+..+....+..+..++...+..........                  
T Consensus       117 ~i~lp~~-~~~i~~~~F~~~~l~~~~~~~--~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (379)
T 4h09_A          117 DFEFPGA-TTEIGNYIFYNSSVKRIVIPK--SVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAA  193 (379)
T ss_dssp             EEECCTT-CCEECTTTTTTCCCCEEEECT--TCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTT
T ss_pred             cccCCCc-cccccccccccceeeeeeccc--eeeccccchhcccccccccccccccceeecccceecccccceecccccc
Confidence            7776543 333332221222344444332  2333333334555555555444322110000                  


Q ss_pred             ----------hhccccccchhhcCCCceeEEEecCCCCCCccc--ccCCccEEEEEEcC--c-ccccccCccceEEEEeC
Q 037732          222 ----------EVEGVKNASLHELKHLISLELQIQDVNTFPRGL--FLEKLETFKILIGG--V-WGWEYADIWCREFKIDL  286 (350)
Q Consensus       222 ----------~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~--~-~~~~~~~~~L~~L~l~~  286 (350)
                                .........+..+.+++.+.+..+ +..++...  .+..|+.+.+...-  + ...+..+.+|+.+.+..
T Consensus       194 ~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~v~~I~~~aF~~~~~l~~i~l~~  272 (379)
T 4h09_A          194 KTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKNVTSIGSFLLQNCTALKTLNFYA  272 (379)
T ss_dssp             CCCSEEECCTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTTCCEECTTTTTTCTTCCEEEECC
T ss_pred             ccccccccccceeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCCccEeCccccceeehhccccccc
Confidence                      000011123344455655555332 23333333  46778888774321  1 12566788899998865


Q ss_pred             CCcccchHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEeCccceecc
Q 037732          287 DSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLTLNP  345 (350)
Q Consensus       287 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~p  345 (350)
                      + ...++...+..+++|+.+.+.++.++.+  -...|  .++.+|+.+.|..+ ++.++
T Consensus       273 ~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I--~~~aF--~~c~~L~~i~lp~~-l~~I~  325 (379)
T 4h09_A          273 K-VKTVPYLLCSGCSNLTKVVMDNSAIETL--EPRVF--MDCVKLSSVTLPTA-LKTIQ  325 (379)
T ss_dssp             C-CSEECTTTTTTCTTCCEEEECCTTCCEE--CTTTT--TTCTTCCEEECCTT-CCEEC
T ss_pred             c-ceecccccccccccccccccccccccee--hhhhh--cCCCCCCEEEcCcc-ccEEH
Confidence            3 3445544555689999999988777763  12345  67899999998543 44443

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.57  E-value=0.0029  Score=50.55  Aligned_cols=80  Identities=16%  Similarity=0.154  Sum_probs=50.3

Q ss_pred             cCCcceEEeecCC-cCcC-----CCccccCcccccEEEecCCCCCC--c----hhhhccCCCcEEEecCCCCc-----cc
Q 037732          109 RMIQVRVINFSYM-NLLS-----LPSSLGLLSNLQNLSLYNCKLLD--I----TVIRDLKKLAVLCLRGSDIK-----RL  171 (350)
Q Consensus       109 ~l~~L~~L~l~~~-~~~~-----lp~~l~~l~~L~~L~l~~~~l~~--~----~~l~~l~~L~~L~l~~~~~~-----~l  171 (350)
                      .-+.|+.|+|+++ .+..     +.+.+..-+.|+.|+|++|.+.+  -    ..+..-..|+.|++++|.+.     .+
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al  118 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL  118 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence            4566777777764 5542     44556666778888888877765  1    44555667777777777776     23


Q ss_pred             cccccCCCCccEEeccC
Q 037732          172 PVEVGELTLLRLLDLRD  188 (350)
Q Consensus       172 p~~l~~l~~L~~L~l~~  188 (350)
                      ...+..-+.|++|++++
T Consensus       119 a~aL~~N~tL~~L~L~n  135 (197)
T 1pgv_A          119 LRSTLVTQSIVEFKADN  135 (197)
T ss_dssp             HHHTTTTCCCSEEECCC
T ss_pred             HHHHhhCCceeEEECCC
Confidence            34444455566666654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.55  E-value=0.0032  Score=50.31  Aligned_cols=116  Identities=13%  Similarity=0.113  Sum_probs=72.8

Q ss_pred             ccCcccccEEEecCC-CCCC------chhhhccCCCcEEEecCCCCc-----cccccccCCCCccEEeccCCCCCC----
Q 037732          130 LGLLSNLQNLSLYNC-KLLD------ITVIRDLKKLAVLCLRGSDIK-----RLPVEVGELTLLRLLDLRDCMELE----  193 (350)
Q Consensus       130 l~~l~~L~~L~l~~~-~l~~------~~~l~~l~~L~~L~l~~~~~~-----~lp~~l~~l~~L~~L~l~~~~~~~----  193 (350)
                      +..-+.|+.|+++++ .+.+      -+.+..-..|+.|++++|.+.     .+...+..-+.|++|+++.|....    
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~  116 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA  116 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence            345578999999885 6655      155666778999999998887     345556666888888888844322    


Q ss_pred             ccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecC
Q 037732          194 VIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQD  246 (350)
Q Consensus       194 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  246 (350)
                      .+... +..-+.|++|+++++....+.......+.+.+..-+.|+.|+++.+.
T Consensus       117 ala~a-L~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          117 RLLRS-TLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHHHH-TTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHH-HhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence            12222 44556688888875422111110022345566666778888876654

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=96.40  E-value=0.00075  Score=63.54  Aligned_cols=58  Identities=5%  Similarity=-0.015  Sum_probs=36.5

Q ss_pred             CCCCCCHHHHHHHHHhc--cCCCCCC---hHHHHHHHHHHHHHHHHhcCC-----------ccchhhHHHHHHHHhcccc
Q 037732            1 YTAIASIDDLLMYGMGM--GLFQGVN---KMQVARARAHGLVHKLKACCM-----------FSMHDVVRDVAISIASTEQ   64 (350)
Q Consensus         1 ~~~~i~~~~l~~~w~a~--g~~~~~~---~~~~~~~~~~~~~~~l~~~~~-----------~~~h~l~~d~~~~~~~~~~   64 (350)
                      ||.+...+  +.+|+|+  ||+...+   ..+++.   + ++++|+.+++           |+|||++|+++.+++.++.
T Consensus       399 fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~---~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~  472 (549)
T 2a5y_B          399 MPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVA---D-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT  472 (549)
T ss_dssp             SCTTCCEE--HHHHHHHSCC-------CCCTHHHH---H-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred             eCCCCeee--eeeeeeeccceeccCCCCCCHHHHH---H-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence            45443333  8999999  9997533   233332   2 6666666666           8999999999998887653

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.19  E-value=0.0015  Score=48.73  Aligned_cols=55  Identities=9%  Similarity=-0.078  Sum_probs=33.0

Q ss_pred             EEEEeCCCcc--cchHHHHHHhcccceeeeccccccchhhhhh-hhcccCcCcceEEEEeCcccee
Q 037732          281 EFKIDLDSKI--RLKDGLILKLEGIEDLWLSYLEEQDVNYFVN-ELVKVGPSQLKHLYIRGSHLTL  343 (350)
Q Consensus       281 ~L~l~~~~~~--~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~-~l~~~~~~~L~~L~l~~~~~~~  343 (350)
                      .++.+++...  .+|..   ..++|+.|+|++|+++.   ++. .+  ..+++|+.|+|.+|++.+
T Consensus        12 ~v~Cs~~~L~~~~vP~~---lp~~l~~L~Ls~N~l~~---l~~~~f--~~l~~L~~L~L~~NP~~C   69 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTA---FPVDTTELVLTGNNLTA---LPPGLL--DALPALRTAHLGANPWRC   69 (130)
T ss_dssp             EEECCSSCCCTTTSCSC---CCTTCSEEECTTSCCSS---CCTTTG--GGCTTCCEEECCSSCCBC
T ss_pred             EEEeCCCCCccccCCCC---CCcCCCEEECCCCcCCc---cChhhh--hhccccCEEEecCCCeec
Confidence            4444555554  55533   22467777777777776   332 33  566777777777777654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.49  E-value=0.028  Score=41.60  Aligned_cols=32  Identities=19%  Similarity=0.182  Sum_probs=15.1

Q ss_pred             cccEEEecCCCCCC--chhhhccCCCcEEEecCC
Q 037732          135 NLQNLSLYNCKLLD--ITVIRDLKKLAVLCLRGS  166 (350)
Q Consensus       135 ~L~~L~l~~~~l~~--~~~l~~l~~L~~L~l~~~  166 (350)
                      +|++|+|++|.++.  ...+..+++|++|++.+|
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   65 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGAN   65 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence            34455555555444  233444445555555544

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=82.76  E-value=1.1  Score=46.13  Aligned_cols=48  Identities=8%  Similarity=0.081  Sum_probs=35.7

Q ss_pred             CCCHHHHHHHHHhccCCCCCChHHHHHHHHHHHHHHHHhcCC-----------ccchhhHHHHHHHHhccc
Q 037732            4 IASIDDLLMYGMGMGLFQGVNKMQVARARAHGLVHKLKACCM-----------FSMHDVVRDVAISIASTE   63 (350)
Q Consensus         4 ~i~~~~l~~~w~a~g~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------~~~h~l~~d~~~~~~~~~   63 (350)
                      .|.++.++.+|.+++        ++++    +++++|+.+++           |+||+++|+++.....++
T Consensus       394 ~i~~~~~~~~~~~~~--------~~~~----~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~  452 (1249)
T 3sfz_A          394 KVPTKVLCVLWDLET--------EEVE----DILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ  452 (1249)
T ss_dssp             CEEHHHHHHHHTCCH--------HHHH----HHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred             eeCHHHHHHHhCCCH--------HHHH----HHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence            488999999997762        3344    45555655665           899999999999887654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	350
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.004
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.002
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.002
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.004
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	0.004

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 47.7 bits (112), Expect = 1e-06
 Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 2/83 (2%)

Query: 106 FFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRG 165
               +  +  +   + N +S  S +  L+ LQ L   N K+ D++ + +L  +  L    
Sbjct: 302 PISNLKNLTYLTLYF-NNISDISPVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGH 360

Query: 166 SDIKRLPVEVGELTLLRLLDLRD 188
           + I  L   +  LT +  L L D
Sbjct: 361 NQISDLT-PLANLTRITQLGLND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.4 bits (106), Expect = 6e-06
 Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 4/79 (5%)

Query: 133 LSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMEL 192
           L NL  L+LY   + DI+ +  L KL  L    + +  +   +  LT +  L      ++
Sbjct: 306 LKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHN-QI 363

Query: 193 EVIPPNILSNLSHLEELYM 211
             + P  L+NL+ + +L +
Sbjct: 364 SDLTP--LANLTRITQLGL 380

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.5 bits (83), Expect = 0.004
 Identities = 29/98 (29%), Positives = 41/98 (41%), Gaps = 1/98 (1%)

Query: 122 NLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLL 181
           N +S  + LG+L+NL  LSL   +L DI  +  L  L  L L  + I  L   +  LT L
Sbjct: 207 NQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLA-PLSGLTKL 265

Query: 182 RLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKW 219
             L L       + P   L+ L++LE            
Sbjct: 266 TELKLGANQISNISPLAGLTALTNLELNENQLEDISPI 303

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.0 bits (105), Expect = 5e-06
 Identities = 40/250 (16%), Positives = 81/250 (32%), Gaps = 24/250 (9%)

Query: 112 QVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKL--LDITVIRDLKKLAVLCLRGSDIK 169
            +RV+  S + L  +P    L  +   L L N K+  +     ++LK L  L L  + I 
Sbjct: 11  HLRVVQCSDLGLEKVPK--DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 68

Query: 170 RL-PVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDK---------- 218
           ++ P     L  L  L L    +L+ +P  +   L  L           K          
Sbjct: 69  KISPGAFAPLVKLERLYLSKN-QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMI 127

Query: 219 ------WEVEVEGVKNASLHELKHLISLELQIQDVNTFPRGLFLEKLETFKILIGGVWGW 272
                   ++  G++N +   +K L  + +   ++ T P+GL    L    +    +   
Sbjct: 128 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP-PSLTELHLDGNKITKV 186

Query: 273 EYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLK 332
           + A +        L          +          L  L   +               ++
Sbjct: 187 DAASLKGLNNLAKLGLSFNSISA-VDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQ 245

Query: 333 HLYIRGSHLT 342
            +Y+  ++++
Sbjct: 246 VVYLHNNNIS 255

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.4 bits (93), Expect = 2e-04
 Identities = 32/191 (16%), Positives = 66/191 (34%), Gaps = 17/191 (8%)

Query: 160 VLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKW 219
           V C     ++++P ++       LLDL++  ++  I      NL +L  L +      K 
Sbjct: 15  VQC-SDLGLEKVPKDLP--PDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKISKI 70

Query: 220 EVEVEGVKNASLHELKHLISLELQIQDVNTFPRGL--FLEKLETFKILIGGVWGWEYADI 277
                     +   L  L  L L    +   P  +   L++L   +  I  V    +  +
Sbjct: 71  S-------PGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGL 123

Query: 278 WCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIR 337
                     + ++         +G++ L    + + ++      L    P  L  L++ 
Sbjct: 124 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL----PPSLTELHLD 179

Query: 338 GSHLTLNPAES 348
           G+ +T   A S
Sbjct: 180 GNKITKVDAAS 190

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.9 bits (99), Expect = 3e-05
 Identities = 14/85 (16%), Positives = 29/85 (34%), Gaps = 5/85 (5%)

Query: 99  SLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKL 158
           S        +    +  +N S   L+ LP+       L+ L      L ++      + L
Sbjct: 272 SSNEIRSLCDLPPSLEELNVSNNKLIELPALPP---RLERLIASFNHLAEVP--ELPQNL 326

Query: 159 AVLCLRGSDIKRLPVEVGELTLLRL 183
             L +  + ++  P     +  LR+
Sbjct: 327 KQLHVEYNPLREFPDIPESVEDLRM 351

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.5 bits (81), Expect = 0.002
 Identities = 24/127 (18%), Positives = 52/127 (40%), Gaps = 4/127 (3%)

Query: 114 RVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDIT-VIRDLKKLAVLCLRGSDIKRLP 172
           RV++ ++   L++   L  L  + +L L + +L  +   +  L+ L VL    + ++ + 
Sbjct: 1   RVLHLAH-KDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59

Query: 173 VEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLH 232
             V  L  L+ L L +    +      L +   L  L +   S  + E   E +    L 
Sbjct: 60  -GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE-MLP 117

Query: 233 ELKHLIS 239
            +  +++
Sbjct: 118 SVSSILT 124

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.9 bits (84), Expect = 0.002
 Identities = 12/49 (24%), Positives = 23/49 (46%)

Query: 116 INFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLR 164
              +  N +S  S L  L NL  + L N ++ D++ + +   L ++ L 
Sbjct: 177 TLKADDNKISDISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLT 225

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (81), Expect = 0.004
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 102 IPNKFFERMIQVRVINFSYMNLLSLPSS-LGLLSNLQNLSLYNCKLL 147
           +PN  F       +++ S   + SLPS  L  L  L+  S YN K L
Sbjct: 192 LPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKL 238

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 35.4 bits (80), Expect = 0.004
 Identities = 7/47 (14%), Positives = 22/47 (46%)

Query: 116 INFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLC 162
           ++     +  + ++L  L   ++L+L    +  I+ +  ++ L +L 
Sbjct: 30  LHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILS 76

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	350
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.86
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.86
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.85
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.85
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.85
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.82
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.81
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.81
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.78
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.75
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.74
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.7
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.7
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.69
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.67
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.59
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.57
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.55
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.52
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.49
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.49
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.48
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.46
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.45
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.41
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.4
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.39
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.29
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.22
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.22
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.1
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.99
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.97
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.9
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.88
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.86
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.66
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.55
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.18
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.84

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.86  E-value=6e-22  Score=172.59  Aligned_cols=242  Identities=12%  Similarity=0.116  Sum_probs=185.6

Q ss_pred             CCccEEEecccCCcccc--ccChHHHhcCCcceEEeecC-CcCc-CCCccccCcccccEEEecCCCCCC--chhhhccCC
Q 037732           84 PQLELLFICADKESSSL--TIPNKFFERMIQVRVINFSY-MNLL-SLPSSLGLLSNLQNLSLYNCKLLD--ITVIRDLKK  157 (350)
Q Consensus        84 ~~L~~L~l~~~~~~~~~--~~~~~~~~~l~~L~~L~l~~-~~~~-~lp~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~  157 (350)
                      .+++.|++  +.+...+  .+|..+ .++++|++|++++ |.+. .+|..|+++++|++|++++|.+..  +..+..+.+
T Consensus        50 ~~v~~L~L--~~~~l~g~~~lp~~l-~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~  126 (313)
T d1ogqa_          50 YRVNNLDL--SGLNLPKPYPIPSSL-ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT  126 (313)
T ss_dssp             CCEEEEEE--ECCCCSSCEECCGGG-GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTT
T ss_pred             EEEEEEEC--CCCCCCCCCCCChHH-hcCccccccccccccccccccccccccccccchhhhccccccccccccccchhh
Confidence            46888888  5554444  467765 5899999999986 6676 689999999999999999999877  567888999


Q ss_pred             CcEEEecCCCCc-cccccccCCCCccEEeccCCCCCCccCcchhCCCCCC-cEEEcCCCCCCcchhhhccccccchhhcC
Q 037732          158 LAVLCLRGSDIK-RLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHL-EELYMGPRSFDKWEVEVEGVKNASLHELK  235 (350)
Q Consensus       158 L~~L~l~~~~~~-~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L-~~L~l~~~~~~~~~~~~~~~~~~~l~~l~  235 (350)
                      |+++++++|.+. .+|..+.+++.++++++++|.....+|.. +..+..+ +.++++.|.+       .+..+..+..+.
T Consensus       127 L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~-~~~l~~l~~~l~~~~n~l-------~~~~~~~~~~l~  198 (313)
T d1ogqa_         127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRL-------TGKIPPTFANLN  198 (313)
T ss_dssp             CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEE-------EEECCGGGGGCC
T ss_pred             hcccccccccccccCchhhccCcccceeeccccccccccccc-cccccccccccccccccc-------cccccccccccc
Confidence            999999988655 77888999999999999987666677876 5666665 7888888877       556666676665


Q ss_pred             CCceeEEEecCCC-CCCccc-ccCCccEEEEEEcC---cccccccCccceEEEEeCCCcc-cchHHHHHHhcccceeeec
Q 037732          236 HLISLELQIQDVN-TFPRGL-FLEKLETFKILIGG---VWGWEYADIWCREFKIDLDSKI-RLKDGLILKLEGIEDLWLS  309 (350)
Q Consensus       236 ~L~~L~l~~~~~~-~l~~~~-~~~~L~~L~l~~~~---~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~L~  309 (350)
                      .+ .+++..+... .+|... .+++++.+.+..+.   .+..+..+++|+.|++++|... .+|.++.. +++|+.|+|+
T Consensus       199 ~~-~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~-L~~L~~L~Ls  276 (313)
T d1ogqa_         199 LA-FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQ-LKFLHSLNVS  276 (313)
T ss_dssp             CS-EEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGG-CTTCCEEECC
T ss_pred             cc-ccccccccccccccccccccccccccccccccccccccccccccccccccCccCeecccCChHHhC-CCCCCEEECc
Confidence            44 5777666543 344444 56788888875433   2335667889999999998766 78888775 5999999999


Q ss_pred             cccccchhhhhhhhcccCcCcceEEEEeCcccee
Q 037732          310 YLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLTL  343 (350)
Q Consensus       310 ~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~  343 (350)
                      +|++++.  +| .+  ..+++|+.+++.+|+..+
T Consensus       277 ~N~l~g~--iP-~~--~~L~~L~~l~l~~N~~l~  305 (313)
T d1ogqa_         277 FNNLCGE--IP-QG--GNLQRFDVSAYANNKCLC  305 (313)
T ss_dssp             SSEEEEE--CC-CS--TTGGGSCGGGTCSSSEEE
T ss_pred             CCccccc--CC-Cc--ccCCCCCHHHhCCCcccc
Confidence            9999863  66 34  678899999999998554

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.86  E-value=6.7e-21  Score=165.24  Aligned_cols=252  Identities=13%  Similarity=0.159  Sum_probs=140.4

Q ss_pred             ccccccccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCC-CccccCcccccEEEecCCCCCC-ch
Q 037732           73 QTNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSL-PSSLGLLSNLQNLSLYNCKLLD-IT  150 (350)
Q Consensus        73 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~~~l~~-~~  150 (350)
                      .+..+|.-. .+++++|++   .++.+.+++...|..+++|++|++++|.+..+ |..|..+++|++|++++|+++. +.
T Consensus        21 ~L~~lP~~l-~~~l~~L~L---s~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~   96 (305)
T d1xkua_          21 GLEKVPKDL-PPDTALLDL---QNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPE   96 (305)
T ss_dssp             CCCSCCCSC-CTTCCEEEC---CSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCS
T ss_pred             CCCccCCCC-CCCCCEEEC---cCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCcc
Confidence            455555311 245666666   33345555554455666666666666666654 4456666666666666666655 32


Q ss_pred             hhhccCCCcEEEecCCCCcccccc-ccCCCCccEEeccCCCCC-CccCcchhCCCCCCcEEEcCCCCCCcchhhhccccc
Q 037732          151 VIRDLKKLAVLCLRGSDIKRLPVE-VGELTLLRLLDLRDCMEL-EVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKN  228 (350)
Q Consensus       151 ~l~~l~~L~~L~l~~~~~~~lp~~-l~~l~~L~~L~l~~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~  228 (350)
                      .  ....+..|++.++.+..++.. +.....+..+....+... .......+..+++|+.+++.+|.+...        +
T Consensus        97 ~--~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l--------~  166 (305)
T d1xkua_          97 K--MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI--------P  166 (305)
T ss_dssp             S--CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC--------C
T ss_pred             c--hhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcccc--------C
Confidence            2  234566666666666555442 344455555555443211 111111245566677777766655322        1


Q ss_pred             cchhhcCCCceeEEEecCCCCCC-ccc-ccCCccEEEEEEcCc----ccccccCccceEEEEeCCCcccchHHHHHHhcc
Q 037732          229 ASLHELKHLISLELQIQDVNTFP-RGL-FLEKLETFKILIGGV----WGWEYADIWCREFKIDLDSKIRLKDGLILKLEG  302 (350)
Q Consensus       229 ~~l~~l~~L~~L~l~~~~~~~l~-~~~-~~~~L~~L~l~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  302 (350)
                      ..  ..++++.|++++|.....+ ..+ .++.+++|.+..+.+    ..++..+++|+.|++++|....+|.++.. +++
T Consensus       167 ~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~-l~~  243 (305)
T d1xkua_         167 QG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLAD-HKY  243 (305)
T ss_dssp             SS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTT-CSS
T ss_pred             cc--cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccccccccccc-ccC
Confidence            11  1356677777666654332 233 456677776654443    23566777777777777777777666554 577


Q ss_pred             cceeeeccccccchhhhhhhhc----ccCcCcceEEEEeCcccee
Q 037732          303 IEDLWLSYLEEQDVNYFVNELV----KVGPSQLKHLYIRGSHLTL  343 (350)
Q Consensus       303 L~~L~L~~n~l~~~~~~~~~l~----~~~~~~L~~L~l~~~~~~~  343 (350)
                      |+.|+|++|+++.+..  ..+.    ....++|+.|++.+|++..
T Consensus       244 L~~L~Ls~N~i~~i~~--~~f~~~~~~~~~~~L~~L~L~~N~~~~  286 (305)
T d1xkua_         244 IQVVYLHNNNISAIGS--NDFCPPGYNTKKASYSGVSLFSNPVQY  286 (305)
T ss_dssp             CCEEECCSSCCCCCCT--TSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred             CCEEECCCCccCccCh--hhccCcchhcccCCCCEEECCCCcCcc
Confidence            7777777777776311  1110    1345677777777777664

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=3.6e-21  Score=163.54  Aligned_cols=197  Identities=18%  Similarity=0.191  Sum_probs=131.4

Q ss_pred             CCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCC-ccccCcccccEEEecCCCCCCchhhhccCCCcEEE
Q 037732           84 PQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLP-SSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLC  162 (350)
Q Consensus        84 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~  162 (350)
                      ..+.+.++   .+.....+|..+.   +++++|+|++|.++.+| ..|..+++|++|++++|.++.++.++.+++|++|+
T Consensus        10 ~~~~~v~C---~~~~L~~iP~~lp---~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~~~~l~~L~~L~   83 (266)
T d1p9ag_          10 ASHLEVNC---DKRNLTALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLD   83 (266)
T ss_dssp             TTCCEEEC---TTSCCSSCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEE
T ss_pred             CCCeEEEc---cCCCCCeeCcCcC---cCCCEEECcCCcCCCcCHHHhhccccccccccccccccccccccccccccccc
Confidence            44445566   3334556665432   46777888888777655 35777778888888887777655556777788888


Q ss_pred             ecCCCCccccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEE
Q 037732          163 LRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLEL  242 (350)
Q Consensus       163 l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l  242 (350)
                      +++|++...+..+..+++|+.|+++++. ...++...+..+.++++|++.+|.+..       ..+..+..+++++.+++
T Consensus        84 Ls~N~l~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~l~~L~l~~n~l~~-------l~~~~~~~l~~l~~l~l  155 (266)
T d1p9ag_          84 LSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKT-------LPPGLLTPTPKLEKLSL  155 (266)
T ss_dssp             CCSSCCSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSCCCC-------CCTTTTTTCTTCCEEEC
T ss_pred             cccccccccccccccccccccccccccc-cceeeccccccccccccccccccccce-------eccccccccccchhccc
Confidence            8777777777777777777777777743 344444436677777777777776632       22345566777777777


Q ss_pred             EecCCCCCCcccccCCccEEEEEEcCcccccccCccceEEEEeCCCcccchHHHHHHhcccceeeeccccc
Q 037732          243 QIQDVNTFPRGLFLEKLETFKILIGGVWGWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEE  313 (350)
Q Consensus       243 ~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l  313 (350)
                      ++|.+..++..                  .+..+++|++|++++|....+|.+++. +++|+.|+|++|.+
T Consensus       156 ~~N~l~~~~~~------------------~~~~l~~L~~L~Ls~N~L~~lp~~~~~-~~~L~~L~L~~Np~  207 (266)
T d1p9ag_         156 ANNNLTELPAG------------------LLNGLENLDTLLLQENSLYTIPKGFFG-SHLLPFAFLHGNPW  207 (266)
T ss_dssp             TTSCCSCCCTT------------------TTTTCTTCCEEECCSSCCCCCCTTTTT-TCCCSEEECCSCCB
T ss_pred             ccccccccCcc------------------ccccccccceeecccCCCcccChhHCC-CCCCCEEEecCCCC
Confidence            77777666554                  234566777777777777777766664 47777777777754

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.85  E-value=8.4e-22  Score=171.65  Aligned_cols=225  Identities=19%  Similarity=0.176  Sum_probs=181.8

Q ss_pred             CcceEEeecCCcCc---CCCccccCcccccEEEecC-CCCCC--chhhhccCCCcEEEecCCCCccc-cccccCCCCccE
Q 037732          111 IQVRVINFSYMNLL---SLPSSLGLLSNLQNLSLYN-CKLLD--ITVIRDLKKLAVLCLRGSDIKRL-PVEVGELTLLRL  183 (350)
Q Consensus       111 ~~L~~L~l~~~~~~---~lp~~l~~l~~L~~L~l~~-~~l~~--~~~l~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~  183 (350)
                      .+++.|+++++.+.   .+|..++++++|++|++++ |.+.+  |+.++++++|++|++++|++..+ +..+..+.+|+.
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence            46899999999887   3899999999999999997 67764  78999999999999999998855 446888999999


Q ss_pred             EeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCC-ceeEEEecCCCC-CCcccccCCccE
Q 037732          184 LDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHL-ISLELQIQDVNT-FPRGLFLEKLET  261 (350)
Q Consensus       184 L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L-~~L~l~~~~~~~-l~~~~~~~~L~~  261 (350)
                      ++++.|.....+|.. +++++.++++++++|.+       .+.+|..+..+..+ +.+.++.|.+.. .|..+.......
T Consensus       130 l~l~~N~~~~~~p~~-l~~l~~L~~l~l~~n~l-------~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~  201 (313)
T d1ogqa_         130 LDFSYNALSGTLPPS-ISSLPNLVGITFDGNRI-------SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAF  201 (313)
T ss_dssp             EECCSSEEESCCCGG-GGGCTTCCEEECCSSCC-------EEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSE
T ss_pred             cccccccccccCchh-hccCcccceeecccccc-------cccccccccccccccccccccccccccccccccccccccc
Confidence            999998777788877 79999999999999988       67788888888776 788888887753 344432233345


Q ss_pred             EEEE----EcCcccccccCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEe
Q 037732          262 FKIL----IGGVWGWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIR  337 (350)
Q Consensus       262 L~l~----~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~  337 (350)
                      +.+.    .+..+..+..+++++.+++.++.....+..+.. +++|+.|+|++|++++.  +|..+  .++++|++|+|+
T Consensus       202 l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~-~~~L~~L~Ls~N~l~g~--iP~~l--~~L~~L~~L~Ls  276 (313)
T d1ogqa_         202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGL-SKNLNGLDLRNNRIYGT--LPQGL--TQLKFLHSLNVS  276 (313)
T ss_dssp             EECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCC-CTTCCEEECCSSCCEEC--CCGGG--GGCTTCCEEECC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccc-ccccccccCccCeeccc--CChHH--hCCCCCCEEECc
Confidence            5542    334555677889999999999766555544443 58999999999999974  88888  789999999999


Q ss_pred             Cccce-eccCCC
Q 037732          338 GSHLT-LNPAES  348 (350)
Q Consensus       338 ~~~~~-~~p~~~  348 (350)
                      +|.++ .+|+..
T Consensus       277 ~N~l~g~iP~~~  288 (313)
T d1ogqa_         277 FNNLCGEIPQGG  288 (313)
T ss_dssp             SSEEEEECCCST
T ss_pred             CCcccccCCCcc
Confidence            99999 567543

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.85  E-value=7.3e-20  Score=163.49  Aligned_cols=253  Identities=17%  Similarity=0.203  Sum_probs=149.4

Q ss_pred             eeecccccccccccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCCC
Q 037732           67 FSATEEQTNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKL  146 (350)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l  146 (350)
                      +...+.++..++.+..+++|++|++  +.+ ....++.  +.++++|++|++++|.+..+++ +..+++|+.|+++++.+
T Consensus        49 L~l~~~~I~~l~gl~~L~nL~~L~L--s~N-~l~~l~~--l~~L~~L~~L~L~~n~i~~i~~-l~~l~~L~~L~~~~~~~  122 (384)
T d2omza2          49 LQADRLGIKSIDGVEYLNNLTQINF--SNN-QLTDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQI  122 (384)
T ss_dssp             EECCSSCCCCCTTGGGCTTCCEEEC--CSS-CCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred             EECCCCCCCCccccccCCCCCEEeC--cCC-cCCCCcc--ccCCcccccccccccccccccc-ccccccccccccccccc
Confidence            3444555666655666777777777  333 3444543  4567777777777777766544 66777777777766654


Q ss_pred             CCch-----------------------------------------------------------------hhhccCCCcEE
Q 037732          147 LDIT-----------------------------------------------------------------VIRDLKKLAVL  161 (350)
Q Consensus       147 ~~~~-----------------------------------------------------------------~l~~l~~L~~L  161 (350)
                      ++..                                                                 ....+++++.+
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l  202 (384)
T d2omza2         123 TDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL  202 (384)
T ss_dssp             CCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccccccccccccccccee
Confidence            4311                                                                 12223344444


Q ss_pred             EecCCCCccccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeE
Q 037732          162 CLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLE  241 (350)
Q Consensus       162 ~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  241 (350)
                      +++++.+..++. ...+++|+.|++++| .+..++.  +..+++|+.|++++|.+...         ..++.+++|+.|+
T Consensus       203 ~l~~n~i~~~~~-~~~~~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~~~---------~~~~~~~~L~~L~  269 (384)
T d2omza2         203 IATNNQISDITP-LGILTNLDELSLNGN-QLKDIGT--LASLTNLTDLDLANNQISNL---------APLSGLTKLTELK  269 (384)
T ss_dssp             ECCSSCCCCCGG-GGGCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECCSSCCCCC---------GGGTTCTTCSEEE
T ss_pred             eccCCccCCCCc-ccccCCCCEEECCCC-CCCCcch--hhcccccchhccccCccCCC---------CcccccccCCEee
Confidence            444444443332 234455555555552 2333332  45555566666655554221         1255566667777


Q ss_pred             EEecCCCCCCcccccCCccEEEEEEcCcc--cccccCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccchhhh
Q 037732          242 LQIQDVNTFPRGLFLEKLETFKILIGGVW--GWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYF  319 (350)
Q Consensus       242 l~~~~~~~l~~~~~~~~L~~L~l~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~  319 (350)
                      ++++.+..+++...++.++.+.+..+.+.  ..+..+++++.|+++++....++.  ...+++|++|++++|.+++   +
T Consensus       270 l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~~--l~~l~~L~~L~L~~n~l~~---l  344 (384)
T d2omza2         270 LGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD---V  344 (384)
T ss_dssp             CCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC---C
T ss_pred             ccCcccCCCCccccccccccccccccccccccccchhcccCeEECCCCCCCCCcc--cccCCCCCEEECCCCCCCC---C
Confidence            76666665544334555566555444332  235677888888888877666652  2346888899998888887   3


Q ss_pred             hhhhcccCcCcceEEEEeCccceeccC
Q 037732          320 VNELVKVGPSQLKHLYIRGSHLTLNPA  346 (350)
Q Consensus       320 ~~~l~~~~~~~L~~L~l~~~~~~~~p~  346 (350)
                      + .+  ..+++|++|++++|+++.+|+
T Consensus       345 ~-~l--~~l~~L~~L~l~~N~l~~l~~  368 (384)
T d2omza2         345 S-SL--ANLTNINWLSAGHNQISDLTP  368 (384)
T ss_dssp             G-GG--GGCTTCCEEECCSSCCCBCGG
T ss_pred             h-hH--cCCCCCCEEECCCCcCCCChh
Confidence            3 35  668889999998888888775

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1e-19  Score=156.01  Aligned_cols=215  Identities=16%  Similarity=0.187  Sum_probs=129.8

Q ss_pred             CccccccChHHHhcCCcceEEeecCCcCcCCCc-cccCcccccEEEecCCCCCC--chhhhccCCCcEEEecC-CCCccc
Q 037732           96 ESSSLTIPNKFFERMIQVRVINFSYMNLLSLPS-SLGLLSNLQNLSLYNCKLLD--ITVIRDLKKLAVLCLRG-SDIKRL  171 (350)
Q Consensus        96 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~l~~-~~~~~l  171 (350)
                      +....++|..+.   ..+++|++++|.++.+|. .|..+++|++|+++++.+..  ...+..+..++.+.... +.+..+
T Consensus        20 ~~~L~~iP~~ip---~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l   96 (284)
T d1ozna_          20 QQGLQAVPVGIP---AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV   96 (284)
T ss_dssp             SSCCSSCCTTCC---TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCC
T ss_pred             CCCCCccCCCCC---CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccc
Confidence            334566665432   467788888888877664 57788888888888887776  35556677777776654 356655


Q ss_pred             c-ccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCCCCC
Q 037732          172 P-VEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTF  250 (350)
Q Consensus       172 p-~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l  250 (350)
                      + ..+.++++|++|++++|. ...++...+..+.+|+.+++.+|.+.       +..+..+..+++|+.|++++|.+..+
T Consensus        97 ~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~l~l~~N~l~-------~i~~~~f~~~~~L~~L~l~~N~l~~l  168 (284)
T d1ozna_          97 DPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNALQ-------ALPDDTFRDLGNLTHLFLHGNRISSV  168 (284)
T ss_dssp             CTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCC-------CCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             cchhhcccccCCEEecCCcc-cccccccccchhcccchhhhcccccc-------ccChhHhccccchhhcccccCccccc
Confidence            4 357777888888887744 33444433667777888888877773       23335577777888888888877766


Q ss_pred             CcccccCCccEEEEEEcCcccccccCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccchhhhhhhhcccCcCc
Q 037732          251 PRGLFLEKLETFKILIGGVWGWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQ  330 (350)
Q Consensus       251 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~  330 (350)
                      +...                  +..+++|+.+.+++|....++...+..+++|+.|++++|.+.+.  .+..+  ..+++
T Consensus       169 ~~~~------------------f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~--~~~~~--~~~~~  226 (284)
T d1ozna_         169 PERA------------------FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL--PTEAL--APLRA  226 (284)
T ss_dssp             CTTT------------------TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCC--CHHHH--TTCTT
T ss_pred             chhh------------------hccccccchhhhhhccccccChhHhhhhhhcccccccccccccc--ccccc--ccccc
Confidence            5543                  33444455555554433333221122235555555555555542  23334  44555


Q ss_pred             ceEEEEeCcccee
Q 037732          331 LKHLYIRGSHLTL  343 (350)
Q Consensus       331 L~~L~l~~~~~~~  343 (350)
                      |++|++++|++.+
T Consensus       227 L~~L~l~~N~l~C  239 (284)
T d1ozna_         227 LQYLRLNDNPWVC  239 (284)
T ss_dssp             CCEEECCSSCEEC
T ss_pred             cCEEEecCCCCCC
Confidence            5555555555543

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.81  E-value=1.1e-18  Score=155.72  Aligned_cols=249  Identities=19%  Similarity=0.231  Sum_probs=197.7

Q ss_pred             ceeeecccccccccccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCC------------------
Q 037732           65 NVFSATEEQTNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSL------------------  126 (350)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l------------------  126 (350)
                      ..+.++++.+..++.+.++++|++|++  +.+. ...++.  +..+++|+.|+++++.+..+                  
T Consensus        69 ~~L~Ls~N~l~~l~~l~~L~~L~~L~L--~~n~-i~~i~~--l~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (384)
T d2omza2          69 TQINFSNNQLTDITPLKNLTKLVDILM--NNNQ-IADITP--LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNT  143 (384)
T ss_dssp             CEEECCSSCCCCCGGGTTCTTCCEEEC--CSSC-CCCCGG--GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEE
T ss_pred             CEEeCcCCcCCCCccccCCcccccccc--cccc-cccccc--cccccccccccccccccccccccccccccccccccccc
Confidence            345667778889988999999999999  4444 444544  46899999999887654321                  


Q ss_pred             ----------------------------------------------CccccCcccccEEEecCCCCCCchhhhccCCCcE
Q 037732          127 ----------------------------------------------PSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAV  160 (350)
Q Consensus       127 ----------------------------------------------p~~l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~  160 (350)
                                                                    +..+..+++++.+++++|.++.......+++|+.
T Consensus       144 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~i~~~~~~~~~~~L~~  223 (384)
T d2omza2         144 ISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDE  223 (384)
T ss_dssp             ECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCE
T ss_pred             ccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccceeeccCCccCCCCcccccCCCCE
Confidence                                                          1234556889999999999888656788899999


Q ss_pred             EEecCCCCccccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCcee
Q 037732          161 LCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISL  240 (350)
Q Consensus       161 L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L  240 (350)
                      |++++|.++.++ .+..+++|+.+++++|. +..++.  ++.+++|++|+++++.+...+         .+..++.++.+
T Consensus       224 L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~-l~~~~~--~~~~~~L~~L~l~~~~l~~~~---------~~~~~~~l~~l  290 (384)
T d2omza2         224 LSLNGNQLKDIG-TLASLTNLTDLDLANNQ-ISNLAP--LSGLTKLTELKLGANQISNIS---------PLAGLTALTNL  290 (384)
T ss_dssp             EECCSSCCCCCG-GGGGCTTCSEEECCSSC-CCCCGG--GTTCTTCSEEECCSSCCCCCG---------GGTTCTTCSEE
T ss_pred             EECCCCCCCCcc-hhhcccccchhccccCc-cCCCCc--ccccccCCEeeccCcccCCCC---------ccccccccccc
Confidence            999999998876 67889999999999954 555665  688999999999988874322         37778889999


Q ss_pred             EEEecCCCCCCcccccCCccEEEEEEcCccc--ccccCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccchhh
Q 037732          241 ELQIQDVNTFPRGLFLEKLETFKILIGGVWG--WEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNY  318 (350)
Q Consensus       241 ~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~  318 (350)
                      .+..|.+..++....+++++.|++..+.+..  .++.+++|++|++++|....++ ++. .+++|+.|++++|+++++  
T Consensus       291 ~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~~l~~l~~L~~L~L~~n~l~~l~-~l~-~l~~L~~L~l~~N~l~~l--  366 (384)
T d2omza2         291 ELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVS-SLA-NLTNINWLSAGHNQISDL--  366 (384)
T ss_dssp             ECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCCG-GGG-GCTTCCEEECCSSCCCBC--
T ss_pred             cccccccccccccchhcccCeEECCCCCCCCCcccccCCCCCEEECCCCCCCCCh-hHc-CCCCCCEEECCCCcCCCC--
Confidence            9999998876554478999999997766544  3678999999999999877776 344 479999999999999984  


Q ss_pred             hhhhhcccCcCcceEEEEeCc
Q 037732          319 FVNELVKVGPSQLKHLYIRGS  339 (350)
Q Consensus       319 ~~~~l~~~~~~~L~~L~l~~~  339 (350)
                       +. +  .++++|+.|+|++|
T Consensus       367 -~~-l--~~l~~L~~L~L~~N  383 (384)
T d2omza2         367 -TP-L--ANLTRITQLGLNDQ  383 (384)
T ss_dssp             -GG-G--TTCTTCSEEECCCE
T ss_pred             -hh-h--ccCCCCCEeeCCCC
Confidence             32 5  78999999999987

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=9e-20  Score=154.80  Aligned_cols=186  Identities=22%  Similarity=0.268  Sum_probs=143.6

Q ss_pred             cccccccccccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCC-
Q 037732           70 TEEQTNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLD-  148 (350)
Q Consensus        70 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~-  148 (350)
                      .+.++..+|+.. .+++++|++  + ++.+..++...|.++++|++|++++|.++.+|. +..+++|++|++++|++.. 
T Consensus        18 ~~~~L~~iP~~l-p~~l~~L~L--s-~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~l~~L~~L~Ls~N~l~~~   92 (266)
T d1p9ag_          18 DKRNLTALPPDL-PKDTTILHL--S-ENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLDLSHNQLQSL   92 (266)
T ss_dssp             TTSCCSSCCSCC-CTTCCEEEC--T-TSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEECCSSCCSSC
T ss_pred             cCCCCCeeCcCc-CcCCCEEEC--c-CCcCCCcCHHHhhcccccccccccccccccccc-cccccccccccccccccccc
Confidence            345677777422 257899999  4 445566776667789999999999998887764 5788899999999999887 


Q ss_pred             chhhhccCCCcEEEecCCCCccccc-cccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhcccc
Q 037732          149 ITVIRDLKKLAVLCLRGSDIKRLPV-EVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVK  227 (350)
Q Consensus       149 ~~~l~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~  227 (350)
                      +..+..+++|++|+++++.+..++. .+..+.+++.|.+++ +.+..++...+..+++++.+++++|.+.       +..
T Consensus        93 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~-n~l~~l~~~~~~~l~~l~~l~l~~N~l~-------~~~  164 (266)
T d1p9ag_          93 PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLEKLSLANNNLT-------ELP  164 (266)
T ss_dssp             CCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTT-SCCCCCCTTTTTTCTTCCEEECTTSCCS-------CCC
T ss_pred             ccccccccccccccccccccceeeccccccccccccccccc-cccceeccccccccccchhccccccccc-------ccC
Confidence            6778888999999999988876654 467788999999988 4566677666778899999999988883       344


Q ss_pred             ccchhhcCCCceeEEEecCCCCCCcccccCCccEEEEEEcCcccccccCccceEEEEeCC
Q 037732          228 NASLHELKHLISLELQIQDVNTFPRGLFLEKLETFKILIGGVWGWEYADIWCREFKIDLD  287 (350)
Q Consensus       228 ~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~  287 (350)
                      +..+..+++|+.|++++|.+..+|+.++                   .+++|+.|++++|
T Consensus       165 ~~~~~~l~~L~~L~Ls~N~L~~lp~~~~-------------------~~~~L~~L~L~~N  205 (266)
T d1p9ag_         165 AGLLNGLENLDTLLLQENSLYTIPKGFF-------------------GSHLLPFAFLHGN  205 (266)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCCCCTTTT-------------------TTCCCSEEECCSC
T ss_pred             ccccccccccceeecccCCCcccChhHC-------------------CCCCCCEEEecCC
Confidence            4668888999999999999988887752                   3456677777775

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.78  E-value=4.8e-18  Score=146.96  Aligned_cols=236  Identities=16%  Similarity=0.165  Sum_probs=181.8

Q ss_pred             ceeeeccccccccc--ccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEec
Q 037732           65 NVFSATEEQTNLLL--EVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLY  142 (350)
Q Consensus        65 ~~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~  142 (350)
                      .++.++++.+..++  .+.++++|++|++  +.+. ...++...|..+++|+.|++++|.++.+|..+  ...++.|+++
T Consensus        34 ~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l--~~n~-~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~--~~~l~~L~~~  108 (305)
T d1xkua_          34 ALLDLQNNKITEIKDGDFKNLKNLHTLIL--INNK-ISKISPGAFAPLVKLERLYLSKNQLKELPEKM--PKTLQELRVH  108 (305)
T ss_dssp             CEEECCSSCCCCBCTTTTTTCTTCCEEEC--CSSC-CCCBCTTTTTTCTTCCEEECCSSCCSBCCSSC--CTTCCEEECC
T ss_pred             CEEECcCCcCCCcChhHhhcccccccccc--cccc-ccccchhhhhCCCccCEecccCCccCcCccch--hhhhhhhhcc
Confidence            35667788888887  3568999999999  4444 45565555778999999999999999888754  4689999999


Q ss_pred             CCCCCC-c-hhhhccCCCcEEEecCCCCc---cccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCC
Q 037732          143 NCKLLD-I-TVIRDLKKLAVLCLRGSDIK---RLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFD  217 (350)
Q Consensus       143 ~~~l~~-~-~~l~~l~~L~~L~l~~~~~~---~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  217 (350)
                      ++.+.. + ..+.....+..++...+...   ..+..+..+++|+.+++++| .+..++..   .+++|++|++.+|.. 
T Consensus       109 ~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n-~l~~l~~~---~~~~L~~L~l~~n~~-  183 (305)
T d1xkua_         109 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQG---LPPSLTELHLDGNKI-  183 (305)
T ss_dssp             SSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS-CCCSCCSS---CCTTCSEEECTTSCC-
T ss_pred             ccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccC-CccccCcc---cCCccCEEECCCCcC-
Confidence            998887 3 44566777888888776443   33446778899999999884 45556653   467899999998887 


Q ss_pred             cchhhhccccccchhhcCCCceeEEEecCCCCCCccc--ccCCccEEEEEEcCc---ccccccCccceEEEEeCCCcccc
Q 037732          218 KWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRGL--FLEKLETFKILIGGV---WGWEYADIWCREFKIDLDSKIRL  292 (350)
Q Consensus       218 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~---~~~~~~~~~L~~L~l~~~~~~~~  292 (350)
                            ....+..+.+++.++.|++++|.+..++...  .+++|++|++..+.+   +..+..+++|+.|++++|.+..+
T Consensus       184 ------~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~L~~L~Ls~N~i~~i  257 (305)
T d1xkua_         184 ------TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAI  257 (305)
T ss_dssp             ------CEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCC
T ss_pred             ------CCCChhHhhccccccccccccccccccccccccccccceeeecccccccccccccccccCCCEEECCCCccCcc
Confidence                  4455677889999999999999988776554  679999999976653   44678899999999999877766


Q ss_pred             hHHH------HHHhcccceeeeccccccch
Q 037732          293 KDGL------ILKLEGIEDLWLSYLEEQDV  316 (350)
Q Consensus       293 ~~~~------~~~~~~L~~L~L~~n~l~~~  316 (350)
                      +...      ....++|+.|+|++|.++.+
T Consensus       258 ~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~  287 (305)
T d1xkua_         258 GSNDFCPPGYNTKKASYSGVSLFSNPVQYW  287 (305)
T ss_dssp             CTTSSSCSSCCTTSCCCSEEECCSSSSCGG
T ss_pred             ChhhccCcchhcccCCCCEEECCCCcCccC
Confidence            5322      22357899999999998765

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=2.3e-17  Score=136.38  Aligned_cols=189  Identities=20%  Similarity=0.266  Sum_probs=137.8

Q ss_pred             hcCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCCchhhhccCCCcEEEecCCCCccccccccCCCCccEEecc
Q 037732          108 ERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLR  187 (350)
Q Consensus       108 ~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~  187 (350)
                      .++.+|+.|++.+|.++.++ .+..+++|++|++++|.+..+..+..+++|+++++++|.++.++ .+..+++|+.+.++
T Consensus        38 ~~l~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~~i~-~l~~l~~L~~l~l~  115 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLT  115 (227)
T ss_dssp             HHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECT
T ss_pred             HHcCCcCEEECCCCCCCcch-hHhcCCCCcEeecCCceeeccccccccccccccccccccccccc-cccccccccccccc
Confidence            45778888888888887774 47888888888888888877656788888888888888777765 56778888888887


Q ss_pred             CCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCCCCCCcccccCCccEEEEEEc
Q 037732          188 DCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRGLFLEKLETFKILIG  267 (350)
Q Consensus       188 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~  267 (350)
                      ++... ..+.  +...+.++.+.++++.+..         ...+.++++|+.|.+++|.+...+.               
T Consensus       116 ~~~~~-~~~~--~~~~~~~~~l~~~~~~~~~---------~~~~~~~~~L~~L~l~~n~~~~~~~---------------  168 (227)
T d1h6ua2         116 STQIT-DVTP--LAGLSNLQVLYLDLNQITN---------ISPLAGLTNLQYLSIGNAQVSDLTP---------------  168 (227)
T ss_dssp             TSCCC-CCGG--GTTCTTCCEEECCSSCCCC---------CGGGGGCTTCCEEECCSSCCCCCGG---------------
T ss_pred             ccccc-ccch--hccccchhhhhchhhhhch---------hhhhccccccccccccccccccchh---------------
Confidence            74432 2333  4667778888887666522         1236677788888887776654322               


Q ss_pred             CcccccccCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEeC
Q 037732          268 GVWGWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRG  338 (350)
Q Consensus       268 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~  338 (350)
                           ++.+++|+.|++++|....++. + ..+++|+.|+|++|+++++   + .+  ..+++|+.|++++
T Consensus       169 -----l~~l~~L~~L~Ls~n~l~~l~~-l-~~l~~L~~L~Ls~N~lt~i---~-~l--~~l~~L~~L~lsn  226 (227)
T d1h6ua2         169 -----LANLSKLTTLKADDNKISDISP-L-ASLPNLIEVHLKNNQISDV---S-PL--ANTSNLFIVTLTN  226 (227)
T ss_dssp             -----GTTCTTCCEEECCSSCCCCCGG-G-GGCTTCCEEECTTSCCCBC---G-GG--TTCTTCCEEEEEE
T ss_pred             -----hcccccceecccCCCccCCChh-h-cCCCCCCEEECcCCcCCCC---c-cc--ccCCCCCEEEeeC
Confidence                 3466778888888877666653 3 3469999999999999984   3 25  6899999999974

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=4.1e-17  Score=139.56  Aligned_cols=209  Identities=16%  Similarity=0.203  Sum_probs=152.1

Q ss_pred             eeecccccccccccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCC-CccccCcccccEEEecCC-
Q 037732           67 FSATEEQTNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSL-PSSLGLLSNLQNLSLYNC-  144 (350)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~~-  144 (350)
                      +..++.++..+|... .+.+++|++  +. +.+..+|...|.++++|+.|+++++.+..+ +..+..+..++.+....+ 
T Consensus        16 v~c~~~~L~~iP~~i-p~~~~~L~L--s~-N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~   91 (284)
T d1ozna_          16 TSCPQQGLQAVPVGI-PAASQRIFL--HG-NRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA   91 (284)
T ss_dssp             EECCSSCCSSCCTTC-CTTCSEEEC--TT-SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred             EEcCCCCCCccCCCC-CCCCCEEEC--cC-CcCCCCCHHHhhcccccccccccccccccccccccccccccccccccccc
Confidence            344455677777422 257899999  44 456778877778999999999999998864 445667888999887654 


Q ss_pred             CCCC--chhhhccCCCcEEEecCCCCccccc-cccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchh
Q 037732          145 KLLD--ITVIRDLKKLAVLCLRGSDIKRLPV-EVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEV  221 (350)
Q Consensus       145 ~l~~--~~~l~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  221 (350)
                      .+..  +..+..+++|++|++++|.+..++. .+...++|+.+++++ +.+..++...+..+++|++|++++|.+.    
T Consensus        92 ~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~-N~l~~i~~~~f~~~~~L~~L~l~~N~l~----  166 (284)
T d1ozna_          92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD-NALQALPDDTFRDLGNLTHLFLHGNRIS----  166 (284)
T ss_dssp             TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCC----
T ss_pred             ccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhcc-ccccccChhHhccccchhhcccccCccc----
Confidence            4555  5778899999999999998886655 466789999999998 5567777666888999999999999884    


Q ss_pred             hhccccccchhhcCCCceeEEEecCCCCCCc-cc-ccCCccEEEEEEcCccc----ccccCccceEEEEeCC
Q 037732          222 EVEGVKNASLHELKHLISLELQIQDVNTFPR-GL-FLEKLETFKILIGGVWG----WEYADIWCREFKIDLD  287 (350)
Q Consensus       222 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~----~~~~~~~L~~L~l~~~  287 (350)
                         ...+..+.++++|+.+.++.|.+..+++ .+ .+++|++|++..+.+..    +++.+++|++|++++|
T Consensus       167 ---~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N  235 (284)
T d1ozna_         167 ---SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN  235 (284)
T ss_dssp             ---EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred             ---ccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCC
Confidence               3445678899999999999999876643 33 44555555554433222    3445555555555554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.70  E-value=2.5e-15  Score=131.82  Aligned_cols=251  Identities=19%  Similarity=0.173  Sum_probs=158.0

Q ss_pred             eeeecccccccccccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCC
Q 037732           66 VFSATEEQTNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCK  145 (350)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~  145 (350)
                      .+.++...+..+|..  .++|++|++  + ++...++|.    ...+|+.|+++++.++.++. +  .+.|++|++++|.
T Consensus        42 ~LdLs~~~L~~lp~~--~~~L~~L~L--s-~N~l~~lp~----~~~~L~~L~l~~n~l~~l~~-l--p~~L~~L~L~~n~  109 (353)
T d1jl5a_          42 ELELNNLGLSSLPEL--PPHLESLVA--S-CNSLTELPE----LPQSLKSLLVDNNNLKALSD-L--PPLLEYLGVSNNQ  109 (353)
T ss_dssp             EEECTTSCCSCCCSC--CTTCSEEEC--C-SSCCSSCCC----CCTTCCEEECCSSCCSCCCS-C--CTTCCEEECCSSC
T ss_pred             EEEeCCCCCCCCCCC--CCCCCEEEC--C-CCCCccccc----chhhhhhhhhhhcccchhhh-h--ccccccccccccc
Confidence            345566677777753  468999999  4 445667775    35688999999988876654 1  1468999999998


Q ss_pred             CCCchhhhccCCCcEEEecCCCCccccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhc-
Q 037732          146 LLDITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVE-  224 (350)
Q Consensus       146 l~~~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-  224 (350)
                      +...+.++.+++|++|++.++.+...+...   ..+..+.+..+.. .. ... +..++.++.+.+..+.....+.... 
T Consensus       110 l~~lp~~~~l~~L~~L~l~~~~~~~~~~~~---~~l~~l~~~~~~~-~~-~~~-l~~l~~l~~L~l~~n~~~~~~~~~~~  183 (353)
T d1jl5a_         110 LEKLPELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQL-EE-LPE-LQNLPFLTAIYADNNSLKKLPDLPLS  183 (353)
T ss_dssp             CSSCCCCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCC-SS-CCC-CTTCTTCCEEECCSSCCSSCCCCCTT
T ss_pred             cccccchhhhccceeecccccccccccccc---ccccchhhccccc-cc-ccc-ccccccceeccccccccccccccccc
Confidence            888555778899999999888777555433   3344444443221 11 111 4556666777666555433221000 


Q ss_pred             ----------cccccchhhcCCCceeEEEecCCCCCCccc-c-----------------cCCccEEEEE-----------
Q 037732          225 ----------GVKNASLHELKHLISLELQIQDVNTFPRGL-F-----------------LEKLETFKIL-----------  265 (350)
Q Consensus       225 ----------~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~-~-----------------~~~L~~L~l~-----------  265 (350)
                                ......+..++.++.++++.|....++... .                 .+.+....+.           
T Consensus       184 ~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~  263 (353)
T d1jl5a_         184 LESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELP  263 (353)
T ss_dssp             CCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                      011123455667777777766544333221 0                 1122222221           


Q ss_pred             ---------EcCcccccccCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEE
Q 037732          266 ---------IGGVWGWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYI  336 (350)
Q Consensus       266 ---------~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l  336 (350)
                               .+.+......+++|++|++++|....+|..    +++|+.|+|++|+++.   +|.     .+++|++|++
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~----~~~L~~L~L~~N~L~~---l~~-----~~~~L~~L~L  331 (353)
T d1jl5a_         264 PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL----PPRLERLIASFNHLAE---VPE-----LPQNLKQLHV  331 (353)
T ss_dssp             TTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSC---CCC-----CCTTCCEEEC
T ss_pred             chhcccccccCccccccccCCCCCEEECCCCccCccccc----cCCCCEEECCCCcCCc---ccc-----ccCCCCEEEC
Confidence                     111122234467999999999988888743    6899999999999987   542     3478999999


Q ss_pred             eCccceeccC
Q 037732          337 RGSHLTLNPA  346 (350)
Q Consensus       337 ~~~~~~~~p~  346 (350)
                      ++|+++.+|+
T Consensus       332 ~~N~L~~lp~  341 (353)
T d1jl5a_         332 EYNPLREFPD  341 (353)
T ss_dssp             CSSCCSSCCC
T ss_pred             cCCcCCCCCc
Confidence            9999999885

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=2.8e-16  Score=126.95  Aligned_cols=163  Identities=25%  Similarity=0.325  Sum_probs=119.9

Q ss_pred             CCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCCchhhhccCCCcE
Q 037732           81 VECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAV  160 (350)
Q Consensus        81 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~  160 (350)
                      ..+++++.|++  +.+ ....+..  ++.+++|++|++++|.++.++. ++.+++|++|++++|.+...+.+..+++|+.
T Consensus        37 ~~l~~l~~L~l--~~~-~i~~l~~--l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~  110 (199)
T d2omxa2          37 TDLDQVTTLQA--DRL-GIKSIDG--VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTG  110 (199)
T ss_dssp             HHHTTCCEEEC--TTS-CCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSE
T ss_pred             HHhcCCCEEEC--CCC-CCCCccc--cccCCCcCcCccccccccCccc-ccCCccccccccccccccccccccccccccc
Confidence            34568888888  333 3444443  4578889999999888887665 7888889999998888877666888888999


Q ss_pred             EEecCCCCccccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCcee
Q 037732          161 LCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISL  240 (350)
Q Consensus       161 L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L  240 (350)
                      |+++++....++ .+..+++|+.+++++| .+..++.  +..+++|+.|++.+|.+...         ..++++++|+.|
T Consensus       111 L~l~~~~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~--l~~~~~L~~L~l~~n~l~~l---------~~l~~l~~L~~L  177 (199)
T d2omxa2         111 LTLFNNQITDID-PLKNLTNLNRLELSSN-TISDISA--LSGLTSLQQLNFSSNQVTDL---------KPLANLTTLERL  177 (199)
T ss_dssp             EECCSSCCCCCG-GGTTCTTCSEEECCSS-CCCCCGG--GTTCTTCSEEECCSSCCCCC---------GGGTTCTTCCEE
T ss_pred             cccccccccccc-ccchhhhhHHhhhhhh-hhccccc--ccccccccccccccccccCC---------ccccCCCCCCEE
Confidence            988888776554 5677888888888884 3455554  67888889998888877432         237788888999


Q ss_pred             EEEecCCCCCCcccccCCccEE
Q 037732          241 ELQIQDVNTFPRGLFLEKLETF  262 (350)
Q Consensus       241 ~l~~~~~~~l~~~~~~~~L~~L  262 (350)
                      ++++|.+.+++.-..+++|++|
T Consensus       178 ~ls~N~i~~i~~l~~L~~L~~L  199 (199)
T d2omxa2         178 DISSNKVSDISVLAKLTNLESL  199 (199)
T ss_dssp             ECCSSCCCCCGGGGGCTTCSEE
T ss_pred             ECCCCCCCCCccccCCCCCCcC
Confidence            9988888776532245666554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=3.3e-16  Score=127.59  Aligned_cols=165  Identities=22%  Similarity=0.286  Sum_probs=120.4

Q ss_pred             CCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCCchhhhccCCCcEE
Q 037732           82 ECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVL  161 (350)
Q Consensus        82 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L  161 (350)
                      .+.+++.|.+  + +.....++.  +..+++|++|++++|.++.++. ++.+++|++|++++|+++.++.+..+++|+.|
T Consensus        44 ~L~~L~~L~l--~-~~~i~~l~~--l~~l~~L~~L~L~~n~i~~l~~-~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L  117 (210)
T d1h6ta2          44 ELNSIDQIIA--N-NSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSL  117 (210)
T ss_dssp             HHHTCCEEEC--T-TSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEE
T ss_pred             HhcCccEEEC--c-CCCCCCchh--HhhCCCCCEEeCCCccccCccc-cccCcccccccccccccccccccccccccccc
Confidence            3457788888  3 334444443  4578888889998888887664 67888888999888888886678888888888


Q ss_pred             EecCCCCccccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeE
Q 037732          162 CLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLE  241 (350)
Q Consensus       162 ~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  241 (350)
                      ++.+|.+..++ .+..+++++.+++++| .+...+.  +..+++|+++++++|.+...        + .+.++++|+.|+
T Consensus       118 ~l~~~~~~~~~-~l~~l~~l~~l~~~~n-~l~~~~~--~~~l~~L~~l~l~~n~l~~i--------~-~l~~l~~L~~L~  184 (210)
T d1h6ta2         118 SLEHNGISDIN-GLVHLPQLESLYLGNN-KITDITV--LSRLTKLDTLSLEDNQISDI--------V-PLAGLTKLQNLY  184 (210)
T ss_dssp             ECTTSCCCCCG-GGGGCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECCSSCCCCC--------G-GGTTCTTCCEEE
T ss_pred             ccccccccccc-cccccccccccccccc-ccccccc--cccccccccccccccccccc--------c-cccCCCCCCEEE
Confidence            88888777665 5777888888888774 3444443  56788888888888877322        2 277888888888


Q ss_pred             EEecCCCCCCcccccCCccEEEEE
Q 037732          242 LQIQDVNTFPRGLFLEKLETFKIL  265 (350)
Q Consensus       242 l~~~~~~~l~~~~~~~~L~~L~l~  265 (350)
                      +++|.+.+++.-..+++|++|++.
T Consensus       185 Ls~N~i~~l~~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         185 LSKNHISDLRALAGLKNLDVLELF  208 (210)
T ss_dssp             CCSSCCCBCGGGTTCTTCSEEEEE
T ss_pred             CCCCCCCCChhhcCCCCCCEEEcc
Confidence            888888877532255666666664

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=6.2e-16  Score=125.94  Aligned_cols=165  Identities=24%  Similarity=0.296  Sum_probs=122.4

Q ss_pred             cCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCCchhhhccCCCcEEEecCCCCccccccccCCCCccEEeccC
Q 037732          109 RMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRD  188 (350)
Q Consensus       109 ~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~  188 (350)
                      .+.+++.|+++++.+..++. +..+++|++|++++|.+++++.++.+++|++|++++|+++.+| .+..+++|+.+++++
T Consensus        44 ~L~~L~~L~l~~~~i~~l~~-l~~l~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~  121 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSLEH  121 (210)
T ss_dssp             HHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEECTT
T ss_pred             HhcCccEEECcCCCCCCchh-HhhCCCCCEEeCCCccccCccccccCccccccccccccccccc-ccccccccccccccc
Confidence            46788889999988887654 7788899999999998888666788899999999988888887 578888999999888


Q ss_pred             CCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCCCCCCcccccCCccEEEEEEcC
Q 037732          189 CMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRGLFLEKLETFKILIGG  268 (350)
Q Consensus       189 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~  268 (350)
                      |. ...++.  +.+++.++.+++++|.+...         ..+..+++|+.+++++|.+..++.                
T Consensus       122 ~~-~~~~~~--l~~l~~l~~l~~~~n~l~~~---------~~~~~l~~L~~l~l~~n~l~~i~~----------------  173 (210)
T d1h6ta2         122 NG-ISDING--LVHLPQLESLYLGNNKITDI---------TVLSRLTKLDTLSLEDNQISDIVP----------------  173 (210)
T ss_dssp             SC-CCCCGG--GGGCTTCCEEECCSSCCCCC---------GGGGGCTTCSEEECCSSCCCCCGG----------------
T ss_pred             cc-cccccc--cccccccccccccccccccc---------cccccccccccccccccccccccc----------------
Confidence            54 344443  67888889999888876322         236677888899998888776543                


Q ss_pred             cccccccCccceEEEEeCCCcccchHHHHHHhcccceeeec
Q 037732          269 VWGWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLS  309 (350)
Q Consensus       269 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~  309 (350)
                          ++.+++|+.|++++|....++ ++. .+++|+.|+|+
T Consensus       174 ----l~~l~~L~~L~Ls~N~i~~l~-~l~-~l~~L~~L~Ls  208 (210)
T d1h6ta2         174 ----LAGLTKLQNLYLSKNHISDLR-ALA-GLKNLDVLELF  208 (210)
T ss_dssp             ----GTTCTTCCEEECCSSCCCBCG-GGT-TCTTCSEEEEE
T ss_pred             ----ccCCCCCCEEECCCCCCCCCh-hhc-CCCCCCEEEcc
Confidence                234556666666666655554 233 35777777775

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=8.9e-16  Score=126.63  Aligned_cols=196  Identities=16%  Similarity=0.183  Sum_probs=144.5

Q ss_pred             ccccccccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCCchhh
Q 037732           73 QTNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVI  152 (350)
Q Consensus        73 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~~l  152 (350)
                      .+.++.....+.+|+.|.+  .+ .....++.  +..+++|+.|++++|.+..++. +.++++|+++++++|.++.++.+
T Consensus        30 ~~~d~~~~~~l~~L~~L~l--~~-~~i~~l~~--l~~l~~L~~L~ls~n~i~~~~~-l~~l~~l~~l~~~~n~~~~i~~l  103 (227)
T d1h6ua2          30 NVTDTVTQADLDGITTLSA--FG-TGVTTIEG--VQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVSAI  103 (227)
T ss_dssp             STTSEECHHHHHTCCEEEC--TT-SCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCGGG
T ss_pred             CcCCcCCHHHcCCcCEEEC--CC-CCCCcchh--HhcCCCCcEeecCCceeecccc-ccccccccccccccccccccccc
Confidence            3344444456778999999  44 44556643  5689999999999999887654 88999999999999998888888


Q ss_pred             hccCCCcEEEecCCCCccccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchh
Q 037732          153 RDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLH  232 (350)
Q Consensus       153 ~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~  232 (350)
                      ..+++|++++++++....++ .+...+.++.+.++.+. +.....  +.++++|++|++.+|.+...         ..++
T Consensus       104 ~~l~~L~~l~l~~~~~~~~~-~~~~~~~~~~l~~~~~~-~~~~~~--~~~~~~L~~L~l~~n~~~~~---------~~l~  170 (227)
T d1h6ua2         104 AGLQSIKTLDLTSTQITDVT-PLAGLSNLQVLYLDLNQ-ITNISP--LAGLTNLQYLSIGNAQVSDL---------TPLA  170 (227)
T ss_dssp             TTCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECCSSC-CCCCGG--GGGCTTCCEEECCSSCCCCC---------GGGT
T ss_pred             cccccccccccccccccccc-hhccccchhhhhchhhh-hchhhh--hccccccccccccccccccc---------hhhc
Confidence            99999999999988776554 45677888899887744 333333  57888999999998877322         2378


Q ss_pred             hcCCCceeEEEecCCCCCCcccccCCccEEEEEEcCcccccccCccceEEEEeCCCcccchHHHHHHhcccceeeec
Q 037732          233 ELKHLISLELQIQDVNTFPRGLFLEKLETFKILIGGVWGWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLS  309 (350)
Q Consensus       233 ~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~  309 (350)
                      ++++|+.|++++|.+.+++.                    ++.+++|++|++++|....++. + ..+++|+.|+++
T Consensus       171 ~l~~L~~L~Ls~n~l~~l~~--------------------l~~l~~L~~L~Ls~N~lt~i~~-l-~~l~~L~~L~ls  225 (227)
T d1h6ua2         171 NLSKLTTLKADDNKISDISP--------------------LASLPNLIEVHLKNNQISDVSP-L-ANTSNLFIVTLT  225 (227)
T ss_dssp             TCTTCCEEECCSSCCCCCGG--------------------GGGCTTCCEEECTTSCCCBCGG-G-TTCTTCCEEEEE
T ss_pred             ccccceecccCCCccCCChh--------------------hcCCCCCCEEECcCCcCCCCcc-c-ccCCCCCEEEee
Confidence            88999999999998877643                    2345666667776666555542 2 245777777776

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=1.6e-15  Score=122.40  Aligned_cols=162  Identities=23%  Similarity=0.312  Sum_probs=119.0

Q ss_pred             cCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCCchhhhccCCCcEEEecCCCCccccccccCCCCccEEeccC
Q 037732          109 RMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRD  188 (350)
Q Consensus       109 ~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~  188 (350)
                      .+.+++.|+++++.+..++ .+..+++|++|++++|+++.++.++.+++|++|++++|.+..++ .+..+++|+.+++++
T Consensus        38 ~l~~l~~L~l~~~~i~~l~-~l~~l~nL~~L~Ls~N~l~~~~~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~  115 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADIT-PLANLTNLTGLTLFN  115 (199)
T ss_dssp             HHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECCS
T ss_pred             HhcCCCEEECCCCCCCCcc-ccccCCCcCcCccccccccCcccccCCccccccccccccccccc-ccccccccccccccc
Confidence            5788899999999888764 47888999999999998888656888999999999988888776 478889999999987


Q ss_pred             CCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCCCCCCcccccCCccEEEEEEcC
Q 037732          189 CMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRGLFLEKLETFKILIGG  268 (350)
Q Consensus       189 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~  268 (350)
                      |.. ...+.  +..+++|+.|++++|.+...         +.+..+++++.|++.+|.+..++.                
T Consensus       116 ~~~-~~~~~--~~~l~~L~~L~l~~n~l~~~---------~~l~~~~~L~~L~l~~n~l~~l~~----------------  167 (199)
T d2omxa2         116 NQI-TDIDP--LKNLTNLNRLELSSNTISDI---------SALSGLTSLQQLNFSSNQVTDLKP----------------  167 (199)
T ss_dssp             SCC-CCCGG--GTTCTTCSEEECCSSCCCCC---------GGGTTCTTCSEEECCSSCCCCCGG----------------
T ss_pred             ccc-ccccc--cchhhhhHHhhhhhhhhccc---------ccccccccccccccccccccCCcc----------------
Confidence            544 33333  67888999999988877322         247788889999998888777643                


Q ss_pred             cccccccCccceEEEEeCCCcccchHHHHHHhccccee
Q 037732          269 VWGWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDL  306 (350)
Q Consensus       269 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  306 (350)
                          ++.+++|+.|++++|....++ .+. .+++|++|
T Consensus       168 ----l~~l~~L~~L~ls~N~i~~i~-~l~-~L~~L~~L  199 (199)
T d2omxa2         168 ----LANLTTLERLDISSNKVSDIS-VLA-KLTNLESL  199 (199)
T ss_dssp             ----GTTCTTCCEEECCSSCCCCCG-GGG-GCTTCSEE
T ss_pred             ----ccCCCCCCEEECCCCCCCCCc-ccc-CCCCCCcC
Confidence                234556666666666555544 122 24555544

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=4.7e-15  Score=123.37  Aligned_cols=220  Identities=15%  Similarity=0.170  Sum_probs=126.2

Q ss_pred             cEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCc-cccCcccccEEEecCCCCCC---chhhhccCCCcEEE
Q 037732           87 ELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPS-SLGLLSNLQNLSLYNCKLLD---ITVIRDLKKLAVLC  162 (350)
Q Consensus        87 ~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~l~~---~~~l~~l~~L~~L~  162 (350)
                      +.+.+  + +.....+|..++   ++++.|++++|.++.+|. .|.++++|++|++++|.+..   +..+..+++++.+.
T Consensus        11 ~~i~c--~-~~~l~~iP~~l~---~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~   84 (242)
T d1xwdc1          11 RVFLC--Q-ESKVTEIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR   84 (242)
T ss_dssp             SEEEE--E-SCSCSSCCSCSC---SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEE
T ss_pred             CEEEE--e-CCCCCCcCCCCC---CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccc
Confidence            45555  2 223446665432   467777777777776655 46777777777777776655   24466677777776


Q ss_pred             ecC-CCCcccc-ccccCCCCccEEeccCCCCCCccCc-chhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcC-CCc
Q 037732          163 LRG-SDIKRLP-VEVGELTLLRLLDLRDCMELEVIPP-NILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELK-HLI  238 (350)
Q Consensus       163 l~~-~~~~~lp-~~l~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~-~L~  238 (350)
                      +.. +.+..++ ..+.++++|++++++++. +...+. ..+..++.+..+...++.+...       .+..+.+++ .++
T Consensus        85 ~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~-l~~~~~~~~~~~l~~l~~~~~~n~~l~~i-------~~~~~~~~~~~l~  156 (242)
T d1xwdc1          85 IEKANNLLYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTI-------ERNSFVGLSFESV  156 (242)
T ss_dssp             EECCTTCCEECTTSEECCTTCCEEEEESCC-CCSCCCCTTTCBSSCEEEEEESCTTCCEE-------CTTSSTTSBSSCE
T ss_pred             ccccccccccccccccccccccccccchhh-hcccccccccccccccccccccccccccc-------cccccccccccce
Confidence            654 3555444 346677777777777743 333332 1122333344434443333211       122333332 566


Q ss_pred             eeEEEecCCCCCCcccccCCccEEEEEEcCcccccccCccceEEE-EeCCCcccchHHHHHHhcccceeeeccccccchh
Q 037732          239 SLELQIQDVNTFPRGLFLEKLETFKILIGGVWGWEYADIWCREFK-IDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVN  317 (350)
Q Consensus       239 ~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~-l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~  317 (350)
                      .+++.+|.+..++...+                   ..+++..+. +.++....+|.+.+..+++|+.|+|++|.++.  
T Consensus       157 ~L~l~~n~l~~i~~~~~-------------------~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~--  215 (242)
T d1xwdc1         157 ILWLNKNGIQEIHNCAF-------------------NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS--  215 (242)
T ss_dssp             EEECCSSCCCEECTTTT-------------------TTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCC--
T ss_pred             eeecccccccccccccc-------------------cchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCc--
Confidence            66666666665554421                   233444443 34567777777656667999999999999987  


Q ss_pred             hhhh-hhcccCcCcceEEEEeCccceeccC
Q 037732          318 YFVN-ELVKVGPSQLKHLYIRGSHLTLNPA  346 (350)
Q Consensus       318 ~~~~-~l~~~~~~~L~~L~l~~~~~~~~p~  346 (350)
                       +|. .+  ..+++|+.+++.+  +..+|.
T Consensus       216 -l~~~~~--~~l~~L~~l~~~~--l~~lp~  240 (242)
T d1xwdc1         216 -LPSYGL--ENLKKLRARSTYN--LKKLPT  240 (242)
T ss_dssp             -CCSSSC--TTCCEEESSSEES--SSCSCC
T ss_pred             -cCHHHH--cCCcccccCcCCC--CCcCCC
Confidence             443 23  5566666665544  456664

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=2.9e-15  Score=124.65  Aligned_cols=84  Identities=19%  Similarity=0.230  Sum_probs=40.7

Q ss_pred             CccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcC-C-CccccCcccccEEEecCC-CCCC--chhhhccCCCc
Q 037732           85 QLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLS-L-PSSLGLLSNLQNLSLYNC-KLLD--ITVIRDLKKLA  159 (350)
Q Consensus        85 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l-p~~l~~l~~L~~L~l~~~-~l~~--~~~l~~l~~L~  159 (350)
                      ++++|++  +. +.+..+|...|.++++|++|++++|.+.. + +..|..++.++++.+..+ .+..  +..+..+++|+
T Consensus        30 ~l~~L~L--s~-n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~  106 (242)
T d1xwdc1          30 NAIELRF--VL-TKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQ  106 (242)
T ss_dssp             CCSEEEE--ES-CCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCC
T ss_pred             CCCEEEC--cC-CcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccc
Confidence            4555555  22 23344444444455555555555555443 2 223455555555555432 3333  23445555555


Q ss_pred             EEEecCCCCccc
Q 037732          160 VLCLRGSDIKRL  171 (350)
Q Consensus       160 ~L~l~~~~~~~l  171 (350)
                      +++++++.+...
T Consensus       107 ~l~l~~~~l~~~  118 (242)
T d1xwdc1         107 YLLISNTGIKHL  118 (242)
T ss_dssp             EEEEESCCCCSC
T ss_pred             ccccchhhhccc
Confidence            555555555433

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.55  E-value=6.2e-14  Score=122.75  Aligned_cols=228  Identities=18%  Similarity=0.165  Sum_probs=146.9

Q ss_pred             CccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCCchhhhccCCCcEEEec
Q 037732           85 QLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLR  164 (350)
Q Consensus        85 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~l~  164 (350)
                      ++++|++  +. .....+|+    ..++|++|++++|.++.+|..+   .+|+.|++++|.++.++.+.  +.|++|+++
T Consensus        39 ~l~~LdL--s~-~~L~~lp~----~~~~L~~L~Ls~N~l~~lp~~~---~~L~~L~l~~n~l~~l~~lp--~~L~~L~L~  106 (353)
T d1jl5a_          39 QAHELEL--NN-LGLSSLPE----LPPHLESLVASCNSLTELPELP---QSLKSLLVDNNNLKALSDLP--PLLEYLGVS  106 (353)
T ss_dssp             TCSEEEC--TT-SCCSCCCS----CCTTCSEEECCSSCCSSCCCCC---TTCCEEECCSSCCSCCCSCC--TTCCEEECC
T ss_pred             CCCEEEe--CC-CCCCCCCC----CCCCCCEEECCCCCCcccccch---hhhhhhhhhhcccchhhhhc--ccccccccc
Confidence            6888999  44 44667875    3678999999999999998754   57999999999887743332  469999999


Q ss_pred             CCCCccccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEe
Q 037732          165 GSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQI  244 (350)
Q Consensus       165 ~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~  244 (350)
                      +|.+..+|. ++.+++|++++++++. ....+.    ....+..+.+..+...         ....+..++.++.+++..
T Consensus       107 ~n~l~~lp~-~~~l~~L~~L~l~~~~-~~~~~~----~~~~l~~l~~~~~~~~---------~~~~l~~l~~l~~L~l~~  171 (353)
T d1jl5a_         107 NNQLEKLPE-LQNSSFLKIIDVDNNS-LKKLPD----LPPSLEFIAAGNNQLE---------ELPELQNLPFLTAIYADN  171 (353)
T ss_dssp             SSCCSSCCC-CTTCTTCCEEECCSSC-CSCCCC----CCTTCCEEECCSSCCS---------SCCCCTTCTTCCEEECCS
T ss_pred             ccccccccc-hhhhccceeecccccc-cccccc----ccccccchhhcccccc---------ccccccccccceeccccc
Confidence            999999984 6889999999998844 333333    2355667776654432         122355566666666665


Q ss_pred             cCCC--------------------CCCcccccCCccEEEEEEcCcccccc--------------------cCccceEEEE
Q 037732          245 QDVN--------------------TFPRGLFLEKLETFKILIGGVWGWEY--------------------ADIWCREFKI  284 (350)
Q Consensus       245 ~~~~--------------------~l~~~~~~~~L~~L~l~~~~~~~~~~--------------------~~~~L~~L~l  284 (350)
                      +...                    .++....++.|+.+.+..+.......                    ..+.+....+
T Consensus       172 n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~  251 (353)
T d1jl5a_         172 NSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDV  251 (353)
T ss_dssp             SCCSSCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCCCCCCTTCCEEEC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            5432                    23322245677777774332211111                    1122333332


Q ss_pred             eCCC---cccchH-------------HHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEeCccceeccCC
Q 037732          285 DLDS---KIRLKD-------------GLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLTLNPAE  347 (350)
Q Consensus       285 ~~~~---~~~~~~-------------~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~p~~  347 (350)
                      ..+.   ...++.             .+...+++|++|+|++|.++.   +|.     .+++|+.|++++|.++.+|..
T Consensus       252 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~---lp~-----~~~~L~~L~L~~N~L~~l~~~  322 (353)
T d1jl5a_         252 SENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE---LPA-----LPPRLERLIASFNHLAEVPEL  322 (353)
T ss_dssp             CSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC---CCC-----CCTTCCEEECCSSCCSCCCCC
T ss_pred             ccccccccccccchhcccccccCccccccccCCCCCEEECCCCccCc---ccc-----ccCCCCEEECCCCcCCccccc
Confidence            2210   000000             011225789999999999887   553     368999999999999998864

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.52  E-value=6.8e-14  Score=103.30  Aligned_cols=101  Identities=23%  Similarity=0.219  Sum_probs=64.7

Q ss_pred             eEEeecCCcCcCCCccccCcccccEEEecCCCCCC-chhhhccCCCcEEEecCCCCccccccccCCCCccEEeccCCCCC
Q 037732          114 RVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLD-ITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMEL  192 (350)
Q Consensus       114 ~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~  192 (350)
                      |+|++++|.++.++. +..+++|++|++++|.++. |+.++.+++|++|++++|.++.+| ++..+++|+++++++ +.+
T Consensus         1 R~L~Ls~n~l~~l~~-l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~~-N~i   77 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCN-NRL   77 (124)
T ss_dssp             SEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCS-SCC
T ss_pred             CEEEcCCCCCCCCcc-cccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccC-ccccccccCeEECCC-Ccc
Confidence            456777777766653 6667777777777777766 556667777777777777776665 466677777777766 333


Q ss_pred             CccCc-chhCCCCCCcEEEcCCCCCC
Q 037732          193 EVIPP-NILSNLSHLEELYMGPRSFD  217 (350)
Q Consensus       193 ~~~~~-~~l~~l~~L~~L~l~~~~~~  217 (350)
                      ..++. ..++.+++|+.|++++|++.
T Consensus        78 ~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          78 QQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             CCCCCchhhcCCCCCCEEECCCCcCC
Confidence            33332 12566667777777766653

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.49  E-value=4.9e-14  Score=112.82  Aligned_cols=123  Identities=18%  Similarity=0.228  Sum_probs=67.9

Q ss_pred             eEEeecCCcCcCCCccccCcccccEEEecCCCCCC---chhhhccCCCcEEEecCCCCccccc-cccCCCCccEEeccCC
Q 037732          114 RVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLD---ITVIRDLKKLAVLCLRGSDIKRLPV-EVGELTLLRLLDLRDC  189 (350)
Q Consensus       114 ~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~---~~~l~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~  189 (350)
                      ++++.+++.++.+|..+.  .++++|++++|.++.   ...+..+++|+.|++++|.+..++. .+..+++|+.|++++ 
T Consensus        11 ~~v~Cs~~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~-   87 (192)
T d1w8aa_          11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE-   87 (192)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS-
T ss_pred             CEEEEeCCCcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc-
Confidence            456666666666666543  466667777766653   2445566666666666666654433 345556666666655 


Q ss_pred             CCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecC
Q 037732          190 MELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQD  246 (350)
Q Consensus       190 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  246 (350)
                      +.+..+++..+.++++|++|++++|.+..       ..+.+|..+++|+++++++|.
T Consensus        88 N~l~~l~~~~F~~l~~L~~L~L~~N~l~~-------i~~~~f~~l~~L~~l~L~~N~  137 (192)
T d1w8aa_          88 NKIKEISNKMFLGLHQLKTLNLYDNQISC-------VMPGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCE-------ECTTSSTTCTTCCEEECTTCC
T ss_pred             ccccccCHHHHhCCCcccccccCCccccc-------cCHHHhcCCcccccccccccc
Confidence            34444544445555556666655555522       222344445555555555544

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=2e-14  Score=111.58  Aligned_cols=107  Identities=15%  Similarity=0.173  Sum_probs=55.1

Q ss_pred             cCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCCchhhhccCCCcEEEecCCCCccccccc-cCCCCccEEecc
Q 037732          109 RMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGSDIKRLPVEV-GELTLLRLLDLR  187 (350)
Q Consensus       109 ~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~l~~~~~~~lp~~l-~~l~~L~~L~l~  187 (350)
                      +..+++.|++++|.++.++..+..+++|++|++++|.++..+.+..+++|++|++++|.+..++..+ ..+++|++|+++
T Consensus        16 n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~   95 (162)
T d1a9na_          16 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT   95 (162)
T ss_dssp             CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECC
T ss_pred             CcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccCCcccCcchhhhhcccccccCCCccccccccccccceec
Confidence            3445555555555555555444445555555555555555444555555555555555555554432 345555555555


Q ss_pred             CCCCCCccCc-chhCCCCCCcEEEcCCCCC
Q 037732          188 DCMELEVIPP-NILSNLSHLEELYMGPRSF  216 (350)
Q Consensus       188 ~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~  216 (350)
                      +| .+..++. ..+..+++|++|++++|++
T Consensus        96 ~N-~i~~~~~l~~l~~l~~L~~L~l~~N~i  124 (162)
T d1a9na_          96 NN-SLVELGDLDPLASLKSLTYLCILRNPV  124 (162)
T ss_dssp             SC-CCCCGGGGGGGGGCTTCCEEECCSSGG
T ss_pred             cc-cccccccccccccccccchhhcCCCcc
Confidence            53 2222221 1145555566666655554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.48  E-value=1.3e-13  Score=101.80  Aligned_cols=106  Identities=23%  Similarity=0.262  Sum_probs=91.5

Q ss_pred             cEEEecCCCCCCchhhhccCCCcEEEecCCCCccccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCC
Q 037732          137 QNLSLYNCKLLDITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSF  216 (350)
Q Consensus       137 ~~L~l~~~~l~~~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  216 (350)
                      |+|++++|.++.++.+..+++|++|++++|.++.+|..++.+++|++|++++ +.+..++.  ++++++|++|++++|.+
T Consensus         1 R~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~-N~i~~l~~--~~~l~~L~~L~l~~N~i   77 (124)
T d1dcea3           1 RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASD-NALENVDG--VANLPRLQELLLCNNRL   77 (124)
T ss_dssp             SEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCS-SCCCCCGG--GTTCSSCCEEECCSSCC
T ss_pred             CEEEcCCCCCCCCcccccCCCCCEEECCCCccCcchhhhhhhhccccccccc-ccccccCc--cccccccCeEECCCCcc
Confidence            6899999999997779999999999999999999998999999999999999 56677765  79999999999999998


Q ss_pred             CcchhhhccccccchhhcCCCceeEEEecCCCCCC
Q 037732          217 DKWEVEVEGVKNASLHELKHLISLELQIQDVNTFP  251 (350)
Q Consensus       217 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~  251 (350)
                      ..++.      ...+..+++|+.|++++|.+...+
T Consensus        78 ~~~~~------~~~l~~~~~L~~L~l~~N~i~~~~  106 (124)
T d1dcea3          78 QQSAA------IQPLVSCPRLVLLNLQGNSLCQEE  106 (124)
T ss_dssp             CSSST------TGGGGGCTTCCEEECTTSGGGGSS
T ss_pred             CCCCC------chhhcCCCCCCEEECCCCcCCcCc
Confidence            54321      245788999999999999876443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=3.1e-14  Score=121.26  Aligned_cols=205  Identities=17%  Similarity=0.152  Sum_probs=96.2

Q ss_pred             CCcceEEeecCCcCcC--CCccccCcccccEEEecCCCCCC--chhhhccCCCcEEEecCC-CCc--cccccccCCCCcc
Q 037732          110 MIQVRVINFSYMNLLS--LPSSLGLLSNLQNLSLYNCKLLD--ITVIRDLKKLAVLCLRGS-DIK--RLPVEVGELTLLR  182 (350)
Q Consensus       110 l~~L~~L~l~~~~~~~--lp~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~l~~~-~~~--~lp~~l~~l~~L~  182 (350)
                      ...|++|+++++.+..  ++..+..+++|++|++++|.+.+  +..+.++++|++|++++| .++  .+..-...+++|+
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~  124 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD  124 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred             CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcc
Confidence            3445555555554431  33334455555555555555444  344555555555555554 333  1222233445555


Q ss_pred             EEeccCCCCCCc--cCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecC-CCCCCcccccCCc
Q 037732          183 LLDLRDCMELEV--IPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQD-VNTFPRGLFLEKL  259 (350)
Q Consensus       183 ~L~l~~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~l~~~~~~~~L  259 (350)
                      +|++++|..+..  +...+...+++|+.|+++++.....    ...+.....++++|+.|++++|. +.+          
T Consensus       125 ~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~----~~~l~~l~~~~~~L~~L~L~~~~~itd----------  190 (284)
T d2astb2         125 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQ----KSDLSTLVRRCPNLVHLDLSDSVMLKN----------  190 (284)
T ss_dssp             EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSC----HHHHHHHHHHCTTCSEEECTTCTTCCG----------
T ss_pred             ccccccccccccccchhhhcccccccchhhhcccccccc----cccccccccccccccccccccccCCCc----------
Confidence            555555443321  1111111234455555544321000    01122223344555555554432 111          


Q ss_pred             cEEEEEEcCcccccccCccceEEEEeCCC-ccc-chHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEe
Q 037732          260 ETFKILIGGVWGWEYADIWCREFKIDLDS-KIR-LKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIR  337 (350)
Q Consensus       260 ~~L~l~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~  337 (350)
                              .....+..+++|++|+++++. ... ....+. .+|+|+.|+++++ +++ ..+....  ..+|+|+   +.
T Consensus       191 --------~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~-~~~~L~~L~l~~~-~~d-~~l~~l~--~~lp~L~---i~  254 (284)
T d2astb2         191 --------DCFQEFFQLNYLQHLSLSRCYDIIPETLLELG-EIPTLKTLQVFGI-VPD-GTLQLLK--EALPHLQ---IN  254 (284)
T ss_dssp             --------GGGGGGGGCTTCCEEECTTCTTCCGGGGGGGG-GCTTCCEEECTTS-SCT-TCHHHHH--HHSTTSE---ES
T ss_pred             --------hhhhhhcccCcCCEEECCCCCCCChHHHHHHh-cCCCCCEEeeeCC-CCH-HHHHHHH--HhCcccc---cc
Confidence                    012245678899999998842 221 122333 3689999999976 332 1233323  4566665   56


Q ss_pred             Cccceec
Q 037732          338 GSHLTLN  344 (350)
Q Consensus       338 ~~~~~~~  344 (350)
                      .++++.+
T Consensus       255 ~~~ls~~  261 (284)
T d2astb2         255 CSHFTTI  261 (284)
T ss_dssp             CCCSCCT
T ss_pred             CccCCCC
Confidence            6677654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=1.2e-13  Score=117.59  Aligned_cols=208  Identities=13%  Similarity=0.062  Sum_probs=141.5

Q ss_pred             cCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcC-CCccccCcccccEEEecCCC-CCC--chh-hhc
Q 037732           80 VVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLS-LPSSLGLLSNLQNLSLYNCK-LLD--ITV-IRD  154 (350)
Q Consensus        80 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~l~~l~~L~~L~l~~~~-l~~--~~~-l~~  154 (350)
                      .....+|++|++  +.+.........++..+++|++|+++++.+.. .+..+.++++|++|++++|. +++  ... ...
T Consensus        42 ~~~~~~L~~LdL--s~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~  119 (284)
T d2astb2          42 HFSPFRVQHMDL--SNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS  119 (284)
T ss_dssp             CCCCBCCCEEEC--TTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHH
T ss_pred             hccCCCCCEEEC--CCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHH
Confidence            345678999999  55554444445567789999999999998773 56678899999999999974 665  333 457


Q ss_pred             cCCCcEEEecCC-CCc--ccccccc-CCCCccEEeccCCC-CCCc-cCcchhCCCCCCcEEEcCCCCCCcchhhhccccc
Q 037732          155 LKKLAVLCLRGS-DIK--RLPVEVG-ELTLLRLLDLRDCM-ELEV-IPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKN  228 (350)
Q Consensus       155 l~~L~~L~l~~~-~~~--~lp~~l~-~l~~L~~L~l~~~~-~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~  228 (350)
                      +++|++|++++| .+.  .+...+. .+++|+.|++++|. .+.. ....+..++++|++|++++|...      .+...
T Consensus       120 ~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~i------td~~~  193 (284)
T d2astb2         120 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVML------KNDCF  193 (284)
T ss_dssp             CTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTC------CGGGG
T ss_pred             HHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCC------Cchhh
Confidence            899999999997 554  3333343 35789999998863 2322 12223467899999999987643      33455


Q ss_pred             cchhhcCCCceeEEEecC-CCCCCcccccCCccEEEEEEcCcccccccCccceEEEEeCCCcccchHHHHHHhcccceee
Q 037732          229 ASLHELKHLISLELQIQD-VNTFPRGLFLEKLETFKILIGGVWGWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLW  307 (350)
Q Consensus       229 ~~l~~l~~L~~L~l~~~~-~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  307 (350)
                      ..+.++++|++|++++|. +.+  ..                ...++.+++|+.|++.++.....-..+...+|+   |.
T Consensus       194 ~~l~~~~~L~~L~L~~C~~i~~--~~----------------l~~L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~---L~  252 (284)
T d2astb2         194 QEFFQLNYLQHLSLSRCYDIIP--ET----------------LLELGEIPTLKTLQVFGIVPDGTLQLLKEALPH---LQ  252 (284)
T ss_dssp             GGGGGCTTCCEEECTTCTTCCG--GG----------------GGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTT---SE
T ss_pred             hhhcccCcCCEEECCCCCCCCh--HH----------------HHHHhcCCCCCEEeeeCCCCHHHHHHHHHhCcc---cc
Confidence            668889999999999864 321  11                113456788888888875222222223333444   55


Q ss_pred             eccccccch
Q 037732          308 LSYLEEQDV  316 (350)
Q Consensus       308 L~~n~l~~~  316 (350)
                      +..+.++..
T Consensus       253 i~~~~ls~~  261 (284)
T d2astb2         253 INCSHFTTI  261 (284)
T ss_dssp             ESCCCSCCT
T ss_pred             ccCccCCCC
Confidence            677777763

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.9e-13  Score=105.84  Aligned_cols=132  Identities=17%  Similarity=0.137  Sum_probs=105.0

Q ss_pred             cccccccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCC-ch-h
Q 037732           74 TNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLD-IT-V  151 (350)
Q Consensus        74 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~-~~-~  151 (350)
                      +...+...++.++|.|++   .++.+..++. .+..+++|+.|++++|.+..++ .+..+++|++|++++|.++. ++ .
T Consensus         8 i~~~~~~~n~~~lr~L~L---~~n~I~~i~~-~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~   82 (162)
T d1a9na_           8 IEQAAQYTNAVRDRELDL---RGYKIPVIEN-LGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRIGEGL   82 (162)
T ss_dssp             HHTSCEEECTTSCEEEEC---TTSCCCSCCC-GGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCEECSCH
T ss_pred             HhhhHhccCcCcCcEEEC---CCCCCCccCc-cccccccCCEEECCCCCCCccC-CcccCcchhhhhcccccccCCCccc
Confidence            344455667789999999   4455666664 3567999999999999999885 48899999999999999988 44 4


Q ss_pred             hhccCCCcEEEecCCCCccccc--cccCCCCccEEeccCCCCCCccC---cchhCCCCCCcEEEc
Q 037732          152 IRDLKKLAVLCLRGSDIKRLPV--EVGELTLLRLLDLRDCMELEVIP---PNILSNLSHLEELYM  211 (350)
Q Consensus       152 l~~l~~L~~L~l~~~~~~~lp~--~l~~l~~L~~L~l~~~~~~~~~~---~~~l~~l~~L~~L~l  211 (350)
                      +..+++|++|++++|.+..++.  .+..+++|+++++++|. +...+   ..++..+++|+.|+.
T Consensus        83 ~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~-i~~~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          83 DQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             HHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETT
T ss_pred             cccccccccceeccccccccccccccccccccchhhcCCCc-cccccchHHHHHHHCCCcCeeCC
Confidence            5689999999999999987764  57889999999999954 44444   234677889998864

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.40  E-value=1.1e-12  Score=104.83  Aligned_cols=124  Identities=19%  Similarity=0.231  Sum_probs=95.7

Q ss_pred             cEEEecccCCccccccChHHHhcCCcceEEeecCCcCcC-C-CccccCcccccEEEecCCCCCC--chhhhccCCCcEEE
Q 037732           87 ELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLS-L-PSSLGLLSNLQNLSLYNCKLLD--ITVIRDLKKLAVLC  162 (350)
Q Consensus        87 ~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l-p~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~  162 (350)
                      +++++   .+....++|..+   ..++++|++++|.++. + +..|..+++|+.|++++|.+..  +..+..+++|++|+
T Consensus        11 ~~v~C---s~~~L~~iP~~l---p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~   84 (192)
T d1w8aa_          11 TTVDC---TGRGLKEIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQ   84 (192)
T ss_dssp             TEEEC---TTSCCSSCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred             CEEEE---eCCCcCccCCCC---CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceee
Confidence            45666   344456777653   2578888999988864 3 4467788889999998888877  47778888899999


Q ss_pred             ecCCCCccccc-cccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCC
Q 037732          163 LRGSDIKRLPV-EVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFD  217 (350)
Q Consensus       163 l~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  217 (350)
                      +++|++..+|. .+.++++|++|++++ +.+..+++..+..+++|++|++++|.+.
T Consensus        85 Ls~N~l~~l~~~~F~~l~~L~~L~L~~-N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          85 LGENKIKEISNKMFLGLHQLKTLNLYD-NQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCSCCCCEECSSSSTTCTTCCEEECCS-SCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             eccccccccCHHHHhCCCcccccccCC-ccccccCHHHhcCCcccccccccccccc
Confidence            99988888766 477889999999988 5667777766788889999999888764

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=2.6e-14  Score=129.60  Aligned_cols=87  Identities=20%  Similarity=0.156  Sum_probs=54.5

Q ss_pred             CCCCCccEEEecccCCccccccC---hHHHhcCCcceEEeecCCcCcC-----CCcccc-CcccccEEEecCCCCCC---
Q 037732           81 VECPQLELLFICADKESSSLTIP---NKFFERMIQVRVINFSYMNLLS-----LPSSLG-LLSNLQNLSLYNCKLLD---  148 (350)
Q Consensus        81 ~~~~~L~~L~l~~~~~~~~~~~~---~~~~~~l~~L~~L~l~~~~~~~-----lp~~l~-~l~~L~~L~l~~~~l~~---  148 (350)
                      ..++++++|.+  ..+.......   ...+..+++|+.|++++|.++.     +...+. ....|++|++++|.+++   
T Consensus        24 ~~l~~l~~L~L--~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~  101 (460)
T d1z7xw1          24 PLLQQCQVVRL--DDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC  101 (460)
T ss_dssp             HHHTTCSEEEE--ESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGH
T ss_pred             HhCCCCCEEEe--CCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCcccccc
Confidence            45677888888  5554322111   1223567888888888887752     222332 23468888888888765   


Q ss_pred             ---chhhhccCCCcEEEecCCCCc
Q 037732          149 ---ITVIRDLKKLAVLCLRGSDIK  169 (350)
Q Consensus       149 ---~~~l~~l~~L~~L~l~~~~~~  169 (350)
                         ...+..+++|++|++++|.+.
T Consensus       102 ~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1         102 GVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             HHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             ccccchhhccccccccccccccch
Confidence               134566788888888877654

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.29  E-value=2.4e-12  Score=112.45  Aligned_cols=138  Identities=12%  Similarity=0.087  Sum_probs=75.3

Q ss_pred             CCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCCCC------CCccc-ccCCccEEEEEEcCc------
Q 037732          203 LSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNT------FPRGL-FLEKLETFKILIGGV------  269 (350)
Q Consensus       203 l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~------l~~~~-~~~~L~~L~l~~~~~------  269 (350)
                      .+.|+.+.++++.+....   ...+...+...+.++.|+++.|.+..      +...+ ..++|+.|++..+.+      
T Consensus       157 ~~~L~~l~l~~n~i~~~~---~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~  233 (344)
T d2ca6a1         157 APPLRSIICGRNRLENGS---MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSS  233 (344)
T ss_dssp             CCCCCEEECCSSCCTGGG---HHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHH
T ss_pred             Ccccceeecccccccccc---cccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccc
Confidence            345555555554442111   11223334445555555555555432      11111 245555555544332      


Q ss_pred             --ccccccCccceEEEEeCCCcccch-HHHHHH-----hcccceeeeccccccc--hhhhhhhhcccCcCcceEEEEeCc
Q 037732          270 --WGWEYADIWCREFKIDLDSKIRLK-DGLILK-----LEGIEDLWLSYLEEQD--VNYFVNELVKVGPSQLKHLYIRGS  339 (350)
Q Consensus       270 --~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~-----~~~L~~L~L~~n~l~~--~~~~~~~l~~~~~~~L~~L~l~~~  339 (350)
                        ...++.+++|++|++++|...... ..+...     .+.|+.|++++|.++.  ...+...+. ...++|++|+|++|
T Consensus       234 ~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~-~~~~~L~~L~l~~N  312 (344)
T d2ca6a1         234 ALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVID-EKMPDLLFLELNGN  312 (344)
T ss_dssp             HHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHH-HHCTTCCEEECTTS
T ss_pred             cccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHH-ccCCCCCEEECCCC
Confidence              124567888999999887654321 122221     2579999999998864  222333331 25788999999999


Q ss_pred             cceec
Q 037732          340 HLTLN  344 (350)
Q Consensus       340 ~~~~~  344 (350)
                      ++...
T Consensus       313 ~~~~~  317 (344)
T d2ca6a1         313 RFSEE  317 (344)
T ss_dssp             BSCTT
T ss_pred             cCCCc
Confidence            88653

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.22  E-value=5.7e-13  Score=106.79  Aligned_cols=138  Identities=19%  Similarity=0.197  Sum_probs=96.4

Q ss_pred             cccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCC-chhhhccCCCcEEEecCCCCccccccccCC
Q 037732          100 LTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLD-ITVIRDLKKLAVLCLRGSDIKRLPVEVGEL  178 (350)
Q Consensus       100 ~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l  178 (350)
                      ..++.. +..+++|+.|++++|.++.++ .+..+++|++|++++|.++. +.....+++|++|++++|.++.++ .+..+
T Consensus        38 ~~l~~s-l~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l~-~~~~l  114 (198)
T d1m9la_          38 EKMDAT-LSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKL  114 (198)
T ss_dssp             CCCHHH-HHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCHH-HHHHH
T ss_pred             hhhhhH-HhcccccceeECcccCCCCcc-cccCCccccChhhcccccccccccccccccccccccccccccccc-ccccc
Confidence            344444 457889999999998888775 48888899999999988877 444455667899999888888775 57788


Q ss_pred             CCccEEeccCCCCCCccCc-chhCCCCCCcEEEcCCCCCCcchhhhc---cccccchhhcCCCceeE
Q 037732          179 TLLRLLDLRDCMELEVIPP-NILSNLSHLEELYMGPRSFDKWEVEVE---GVKNASLHELKHLISLE  241 (350)
Q Consensus       179 ~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~---~~~~~~l~~l~~L~~L~  241 (350)
                      ++|+.|++++ +.+..++. ..+..+++|+.|++++|++........   ......+..+++|+.|+
T Consensus       115 ~~L~~L~L~~-N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         115 VNLRVLYMSN-NKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHSSEEEESE-EECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             cccccccccc-chhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            8899999988 44444442 226888899999998887633221000   00112256778888775

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.22  E-value=5.6e-14  Score=112.76  Aligned_cols=127  Identities=19%  Similarity=0.257  Sum_probs=100.0

Q ss_pred             ceEEeecCC--cCcCCCccccCcccccEEEecCCCCCCchhhhccCCCcEEEecCCCCccccccccCCCCccEEeccCCC
Q 037732          113 VRVINFSYM--NLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCM  190 (350)
Q Consensus       113 L~~L~l~~~--~~~~lp~~l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~  190 (350)
                      .+.+++.+.  .+..++.++..+++|++|++++|.++.++.+..+++|++|++++|.+..+|.....+++|++|++++| 
T Consensus        25 ~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i~~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N-  103 (198)
T d1m9la_          25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN-  103 (198)
T ss_dssp             CSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESCCCCHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEE-
T ss_pred             cceeeeecccCchhhhhhHHhcccccceeECcccCCCCcccccCCccccChhhcccccccccccccccccccccccccc-
Confidence            444555543  34567778899999999999999998877799999999999999999988866666778999999884 


Q ss_pred             CCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCCC
Q 037732          191 ELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVN  248 (350)
Q Consensus       191 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  248 (350)
                      .+..++.  +.++++|+.|++++|.+..++.      ...+..+++|+.|++++|.+.
T Consensus       104 ~i~~l~~--~~~l~~L~~L~L~~N~i~~~~~------~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         104 QIASLSG--IEKLVNLRVLYMSNNKITNWGE------IDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             ECCCHHH--HHHHHHSSEEEESEEECCCHHH------HHHHTTTTTCSEEEECSSHHH
T ss_pred             ccccccc--ccccccccccccccchhccccc------cccccCCCccceeecCCCccc
Confidence            5566654  6788999999999988854321      135788899999999998764

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.10  E-value=7.2e-11  Score=102.90  Aligned_cols=230  Identities=12%  Similarity=0.030  Sum_probs=143.4

Q ss_pred             CCCCCccEEEecccCCccccccChHH---HhcCCcceEEeecCCcCcC-----------CCccccCcccccEEEecCCCC
Q 037732           81 VECPQLELLFICADKESSSLTIPNKF---FERMIQVRVINFSYMNLLS-----------LPSSLGLLSNLQNLSLYNCKL  146 (350)
Q Consensus        81 ~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~l~~L~~L~l~~~~~~~-----------lp~~l~~l~~L~~L~l~~~~l  146 (350)
                      .....++.|++  +.+.........+   +...++|+.++++++....           +...+..+++|+.|++++|.+
T Consensus        28 ~~~~~l~~L~L--s~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i  105 (344)
T d2ca6a1          28 LEDDSVKEIVL--SGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF  105 (344)
T ss_dssp             HHCSCCCEEEC--TTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred             hhCCCCCEEEC--cCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccc
Confidence            34677888888  4443323222222   2346788888887764432           223355677888888888877


Q ss_pred             CC--c----hhhhccCCCcEEEecCCCCcc-----cccc---------ccCCCCccEEeccCCCCCC----ccCcchhCC
Q 037732          147 LD--I----TVIRDLKKLAVLCLRGSDIKR-----LPVE---------VGELTLLRLLDLRDCMELE----VIPPNILSN  202 (350)
Q Consensus       147 ~~--~----~~l~~l~~L~~L~l~~~~~~~-----lp~~---------l~~l~~L~~L~l~~~~~~~----~~~~~~l~~  202 (350)
                      ..  .    ..+...++|+.|++++|.+..     +...         ....+.|+.+.++++....    .+... +..
T Consensus       106 ~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~-l~~  184 (344)
T d2ca6a1         106 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT-FQS  184 (344)
T ss_dssp             CTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH-HHH
T ss_pred             ccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccch-hhh
Confidence            65  2    345567888888888886641     1111         1345678888887743221    12222 456


Q ss_pred             CCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCCCC-----CCccc-ccCCccEEEEEEcCccc-----
Q 037732          203 LSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNT-----FPRGL-FLEKLETFKILIGGVWG-----  271 (350)
Q Consensus       203 l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-----l~~~~-~~~~L~~L~l~~~~~~~-----  271 (350)
                      .+.|++|+++.|.+.....  ...+...+..+++|+.|++++|.+..     +...+ .+++|++|++..+.+.+     
T Consensus       185 ~~~L~~L~L~~n~i~~~g~--~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~  262 (344)
T d2ca6a1         185 HRLLHTVKMVQNGIRPEGI--EHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA  262 (344)
T ss_dssp             CTTCCEEECCSSCCCHHHH--HHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred             hhhhccccccccccccccc--ccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHH
Confidence            6788888888887643211  11234556778888888888887642     33333 46788888887665432     


Q ss_pred             ---ccc--cCccceEEEEeCCCccc-----chHHHHHHhcccceeeeccccccc
Q 037732          272 ---WEY--ADIWCREFKIDLDSKIR-----LKDGLILKLEGIEDLWLSYLEEQD  315 (350)
Q Consensus       272 ---~~~--~~~~L~~L~l~~~~~~~-----~~~~~~~~~~~L~~L~L~~n~l~~  315 (350)
                         .+.  ..+.|++|++++|....     +...+....++|+.|+|++|.+..
T Consensus       263 l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         263 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             HHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             HHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence               122  34679999999976543     344444456899999999999865

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=1.2e-10  Score=104.92  Aligned_cols=105  Identities=22%  Similarity=0.233  Sum_probs=80.6

Q ss_pred             CCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcC-----CCccccCcccccEEEecCCCCCC--chhhhc--
Q 037732           84 PQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLS-----LPSSLGLLSNLQNLSLYNCKLLD--ITVIRD--  154 (350)
Q Consensus        84 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-----lp~~l~~l~~L~~L~l~~~~l~~--~~~l~~--  154 (350)
                      .+|+.|++  +.+.........++..++++++|++++|.++.     +...+..+++|++|++++|.+++  ...+..  
T Consensus         2 ~~l~~ld~--~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l   79 (460)
T d1z7xw1           2 LDIQSLDI--QCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL   79 (460)
T ss_dssp             EEEEEEEE--ESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred             CCCCEEEe--eCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHH
Confidence            36889999  56665554444556789999999999998872     45667889999999999998865  333332  


Q ss_pred             ---cCCCcEEEecCCCCcc-----ccccccCCCCccEEeccCCC
Q 037732          155 ---LKKLAVLCLRGSDIKR-----LPVEVGELTLLRLLDLRDCM  190 (350)
Q Consensus       155 ---l~~L~~L~l~~~~~~~-----lp~~l~~l~~L~~L~l~~~~  190 (350)
                         ..+|+.|++++|.++.     ++..+..+++|++|++++|.
T Consensus        80 ~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1          80 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred             hcCCCCCCEEECCCCCccccccccccchhhcccccccccccccc
Confidence               3579999999998863     55667889999999998743

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=2.1e-09  Score=82.03  Aligned_cols=102  Identities=20%  Similarity=0.135  Sum_probs=64.4

Q ss_pred             ceEEeecCCcCcCCCccccCcccccEEEecCCC-CCC--chhhhccCCCcEEEecCCCCccccc-cccCCCCccEEeccC
Q 037732          113 VRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCK-LLD--ITVIRDLKKLAVLCLRGSDIKRLPV-EVGELTLLRLLDLRD  188 (350)
Q Consensus       113 L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~-l~~--~~~l~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~  188 (350)
                      ...++.+++.+...|..+..+++|++|++++++ ++.  +..+..+++|+.|++++|+++.++. .+..+++|++|++++
T Consensus        10 ~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~   89 (156)
T d2ifga3          10 SSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (156)
T ss_dssp             SSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             CCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccC
Confidence            344555666655666666666777777776553 555  3556667777777777777776643 466677777777776


Q ss_pred             CCCCCccCcchhCCCCCCcEEEcCCCCC
Q 037732          189 CMELEVIPPNILSNLSHLEELYMGPRSF  216 (350)
Q Consensus       189 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~  216 (350)
                       +.+..+|...+. ..+|++|++++|++
T Consensus        90 -N~l~~l~~~~~~-~~~l~~L~L~~Np~  115 (156)
T d2ifga3          90 -NALESLSWKTVQ-GLSLQELVLSGNPL  115 (156)
T ss_dssp             -SCCSCCCSTTTC-SCCCCEEECCSSCC
T ss_pred             -CCCcccChhhhc-cccccccccCCCcc
Confidence             445566665333 33577777777765

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=3.3e-09  Score=80.91  Aligned_cols=91  Identities=14%  Similarity=0.066  Sum_probs=67.2

Q ss_pred             CCcEEEecCCCCccccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCC
Q 037732          157 KLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKH  236 (350)
Q Consensus       157 ~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~  236 (350)
                      ....++..++.+...|..+..+++|+.|++.+++.++.++...+.++++|+.|++++|.+.       ...+.+|..+++
T Consensus         9 ~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~-------~i~~~~f~~l~~   81 (156)
T d2ifga3           9 GSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-------FVAPDAFHFTPR   81 (156)
T ss_dssp             SSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCC-------EECTTGGGSCSC
T ss_pred             CCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccC-------Cccccccccccc
Confidence            3445666666666777777777888888887656677777666788888888888888773       333466788888


Q ss_pred             CceeEEEecCCCCCCccc
Q 037732          237 LISLELQIQDVNTFPRGL  254 (350)
Q Consensus       237 L~~L~l~~~~~~~l~~~~  254 (350)
                      |+.|++++|.+..+|...
T Consensus        82 L~~L~Ls~N~l~~l~~~~   99 (156)
T d2ifga3          82 LSRLNLSFNALESLSWKT   99 (156)
T ss_dssp             CCEEECCSSCCSCCCSTT
T ss_pred             ccceeccCCCCcccChhh
Confidence            888888888888877764

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=3.3e-07  Score=69.98  Aligned_cols=57  Identities=23%  Similarity=0.285  Sum_probs=26.7

Q ss_pred             CcccccEEEecCCCCCCc----hhhhccCCCcEEEecCCCCccccc-cccCCCCccEEeccC
Q 037732          132 LLSNLQNLSLYNCKLLDI----TVIRDLKKLAVLCLRGSDIKRLPV-EVGELTLLRLLDLRD  188 (350)
Q Consensus       132 ~l~~L~~L~l~~~~l~~~----~~l~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~  188 (350)
                      .+++|++|++++|+++..    ..+..+++|++|++++|.++.++. ......+|+.+++++
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~  124 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDG  124 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTT
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCC
Confidence            445555555555555441    223445555555555555554443 111223344444444

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=2.9e-06  Score=64.50  Aligned_cols=82  Identities=23%  Similarity=0.163  Sum_probs=61.5

Q ss_pred             hHHHhcCCcceEEeecCCcCcCC---CccccCcccccEEEecCCCCCCchhhh--ccCCCcEEEecCCCCccccc-----
Q 037732          104 NKFFERMIQVRVINFSYMNLLSL---PSSLGLLSNLQNLSLYNCKLLDITVIR--DLKKLAVLCLRGSDIKRLPV-----  173 (350)
Q Consensus       104 ~~~~~~l~~L~~L~l~~~~~~~l---p~~l~~l~~L~~L~l~~~~l~~~~~l~--~l~~L~~L~l~~~~~~~lp~-----  173 (350)
                      ..++..+++|++|++++|.++.+   +..+..+++|++|++++|.++.++.+.  ...+|+.+++.+|.+.....     
T Consensus        58 ~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y  137 (162)
T d1koha1          58 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTY  137 (162)
T ss_dssp             HHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHH
T ss_pred             HHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhH
Confidence            34456799999999999999865   345678999999999999999843333  34578999999998764321     


Q ss_pred             ---cccCCCCccEEe
Q 037732          174 ---EVGELTLLRLLD  185 (350)
Q Consensus       174 ---~l~~l~~L~~L~  185 (350)
                         .+..+++|+.||
T Consensus       138 ~~~i~~~~P~L~~LD  152 (162)
T d1koha1         138 ISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHTTSTTCCEET
T ss_pred             HHHHHHHCCCCCEEC
Confidence               245667777775

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.66  E-value=2.1e-05  Score=59.88  Aligned_cols=81  Identities=17%  Similarity=0.167  Sum_probs=46.6

Q ss_pred             hcCCcceEEeecCC-cCcC-----CCccccCcccccEEEecCCCCCC--c----hhhhccCCCcEEEecCCCCc-----c
Q 037732          108 ERMIQVRVINFSYM-NLLS-----LPSSLGLLSNLQNLSLYNCKLLD--I----TVIRDLKKLAVLCLRGSDIK-----R  170 (350)
Q Consensus       108 ~~l~~L~~L~l~~~-~~~~-----lp~~l~~l~~L~~L~l~~~~l~~--~----~~l~~l~~L~~L~l~~~~~~-----~  170 (350)
                      .+.++|+.|+++++ .++.     +...+...++|++|++++|.+.+  .    ..+...+.|+.|++++|.+.     .
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            34577777777764 3441     33345566677777777776654  1    34445566777777666655     2


Q ss_pred             ccccccCCCCccEEeccC
Q 037732          171 LPVEVGELTLLRLLDLRD  188 (350)
Q Consensus       171 lp~~l~~l~~L~~L~l~~  188 (350)
                      +...+...++|++|++++
T Consensus        92 l~~aL~~n~sL~~L~l~~  109 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADN  109 (167)
T ss_dssp             HHHHTTTTCCCSEEECCC
T ss_pred             HHHHHHhCCcCCEEECCC
Confidence            233344455555555554

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.55  E-value=4.4e-05  Score=58.03  Aligned_cols=37  Identities=19%  Similarity=0.231  Sum_probs=15.9

Q ss_pred             hccCCCcEEEecCCCCc-----cccccccCCCCccEEeccCC
Q 037732          153 RDLKKLAVLCLRGSDIK-----RLPVEVGELTLLRLLDLRDC  189 (350)
Q Consensus       153 ~~l~~L~~L~l~~~~~~-----~lp~~l~~l~~L~~L~l~~~  189 (350)
                      ...++|+.|++++|.+.     .+...+...+.|++|++++|
T Consensus        41 ~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n   82 (167)
T d1pgva_          41 CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN   82 (167)
T ss_dssp             TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS
T ss_pred             hhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehh
Confidence            33444555555544443     12222333444555555443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.18  E-value=0.00022  Score=53.84  Aligned_cols=80  Identities=15%  Similarity=0.145  Sum_probs=46.0

Q ss_pred             hcCCcceEEeecCC-cCcC-----CCccccCcccccEEEecCCCCCC--c----hhhhccCCCcEEEecCCCCc-----c
Q 037732          108 ERMIQVRVINFSYM-NLLS-----LPSSLGLLSNLQNLSLYNCKLLD--I----TVIRDLKKLAVLCLRGSDIK-----R  170 (350)
Q Consensus       108 ~~l~~L~~L~l~~~-~~~~-----lp~~l~~l~~L~~L~l~~~~l~~--~----~~l~~l~~L~~L~l~~~~~~-----~  170 (350)
                      .+.+.|+.|+++++ .++.     +...+...++|+.|++++|.+..  .    ..+.....++.+++.+|.+.     .
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            34566677776653 3431     33445566777777777776655  1    34455666777777666554     2


Q ss_pred             ccccccCCCCccEEecc
Q 037732          171 LPVEVGELTLLRLLDLR  187 (350)
Q Consensus       171 lp~~l~~l~~L~~L~l~  187 (350)
                      +...+...++|+.+++.
T Consensus        94 l~~~l~~~~~L~~l~L~  110 (166)
T d1io0a_          94 LVEALQSNTSLIELRID  110 (166)
T ss_dssp             HHHGGGGCSSCCEEECC
T ss_pred             HHHHHHhCccccEEeec
Confidence            33345555666655543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.84  E-value=0.00046  Score=52.00  Aligned_cols=112  Identities=13%  Similarity=0.158  Sum_probs=71.8

Q ss_pred             cCcccccEEEecCC-CCCC--c----hhhhccCCCcEEEecCCCCc-----cccccccCCCCccEEeccCCCCCCc----
Q 037732          131 GLLSNLQNLSLYNC-KLLD--I----TVIRDLKKLAVLCLRGSDIK-----RLPVEVGELTLLRLLDLRDCMELEV----  194 (350)
Q Consensus       131 ~~l~~L~~L~l~~~-~l~~--~----~~l~~l~~L~~L~l~~~~~~-----~lp~~l~~l~~L~~L~l~~~~~~~~----  194 (350)
                      ...+.|++|+++++ .++.  .    ..+...++|+.|++++|.+.     .+...+...+.++.+++++|.....    
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            45678999999874 4654  2    44556788999999988776     3444566678888888887543322    


Q ss_pred             cCcchhCCCCCCcEEEcCCC--CCCcchhhhccccccchhhcCCCceeEEEecC
Q 037732          195 IPPNILSNLSHLEELYMGPR--SFDKWEVEVEGVKNASLHELKHLISLELQIQD  246 (350)
Q Consensus       195 ~~~~~l~~l~~L~~L~l~~~--~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  246 (350)
                      +... +...++|+.+++..+  .+.. .+  ...+...+...+.|+.|++..+.
T Consensus        94 l~~~-l~~~~~L~~l~L~l~~n~i~~-~~--~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          94 LVEA-LQSNTSLIELRIDNQSQPLGN-NV--EMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHG-GGGCSSCCEEECCCCSSCCCH-HH--HHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHH-HHhCccccEEeeccCCCcCcH-HH--HHHHHHHHHhCCCcCEEeCcCCC
Confidence            2233 566777887766533  3311 11  23455667777888888876554