Citrus Sinensis ID: 037794

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290---
Protein Sequence
VGIPNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVLHVTTDNKEPQKLTSEENFLLAHQVQPLFDEK
Secondary Structure (PSIPRED)
ccccccccEEEEEccccccEEcccccccccccccccccccEEEcccccccccccccccccccccccEEEEEEcccccEEcccccccccccEEEEcccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccEEEEEEccccccccccHHHcccccccEEEEEccccccEEEccccccccccccccccccccEEEccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHccEEEEccHHHHHHHHHccccccccccEEccccEEEEEcccHHHHHHccccccEEccccEEEEEEcccccEEEccccccccccEEEEEEccccccEEEcccccccHHHHHHHHHHcccccHHEEEccccccHHHHcccccccccHccccEEEEEcccccHHHcccHHHHHHHHHHcEEEEcccHcHEEEEEcccccccHHHHccHcHcccEEEHcccHHHHHHccccccEEEccccEEEEEEcccccEEEccccEEEEEcccccccEEcccccHHHHcccccccccc
Coil and Loop (DISEMBL)
vgipnslvnlnVSYCEKIEEIIGHVGEEAKENRIAFNelkflelddlprltsfclenytlefpslervfvtrcpnmktfsqgivstpklhevqvSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERlqlshfprlkeiwhgqalpvsfFNNLFKLVVDdcanmssaipANLLRCLSnlrwlevrncdsleevlhleelnadkehigplfprLFILrlidlpklkrfCNFTgniiempmlwsltiencpdmetFISNSVlhvttdnkepqkltseENFLLAhqvqplfdek
Flexible Loop (DISEMBL)
vgipnslvnLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKtfsqgivstpklHEVQVSKkeedelhhwegnklnstiQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEelnadkehigpLFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVLHVTTDNKEPQKLTSEENfllahqvqplfdek
Low Complexity Region (SEG)
VGIPNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVLHVTTDNKEPQKLTSEENFLLAHQVQPLFDEK
Disordered region (IsUnstruct)
******LVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGIVSTPKL*************HHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVLHVT****************************
Disordered Region (DISOPRED)
VGIPNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHL***********PLFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFIS******************EENFLLAHQVQPLFD**
Disordered Region (DISEMBL)
VGIPNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGIVSTPKLH***********LHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVLHVTTDNKEPQKLTSEENFLLAHQVQPLFDEK
Disordered Region (DISPRO)
VGIPNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVLHVTTDNKEPQKLTSEENFLLAHQVQPLF***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
VGIPNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVLHVTTDNKEPQKLTSEENFLLAHQVQPLFDEK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	293
224110992	2359	cc-nbs-lrr resistance protein [Populus t	0.860	0.106	0.437	3e-45
255542484	2460	phosphoprotein phosphatase, putative [Ri	0.843	0.100	0.434	3e-42
358344903	2248	Cc-nbs-lrr resistance protein [Medicago	0.726	0.094	0.422	5e-30
353685492	2756	Rpp4C3 [Phaseolus vulgaris]	0.819	0.087	0.361	2e-29
357439633	1039	Rpp4 candidate [Medicago truncatula] gi|	0.744	0.209	0.389	4e-28
358344279	1053	Rpp4 candidate [Medicago truncatula] gi|	0.733	0.204	0.380	2e-27
328447249	3916	Rpp4 candidate R3 [Glycine max]	0.853	0.063	0.340	4e-27
357439279	1065	Rpp4 candidate [Medicago truncatula] gi|	0.733	0.201	0.380	4e-27
357504319	1022	Resistance protein RGC2 [Medicago trunca	0.853	0.244	0.353	5e-27
328447253	3695	Rpp4 candidate R10 [Glycine max]	0.860	0.068	0.332	2e-26

>gi|224110992|ref|XP_002332999.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222834484|gb|EEE72961.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  188 bits (477), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 113/258 (43%), Positives = 159/258 (61%), Gaps = 6/258 (2%)

Query: 5    NSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPS 64
              LV L V  C+ + EI+   G E  ++ I F++L++LEL  L  LTSFC  NY   FPS
Sbjct: 1542 GQLVKLIVVNCKLVTEIVAKQGGEINDD-IIFSKLEYLELVRLENLTSFCPGNYNFIFPS 1600

Query: 65   LERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGF 124
            L+ + V +CP M+ FSQGI STPKL  V   K   +E   W GN LN+T+Q+ Y +M+G 
Sbjct: 1601 LKGMVVEQCPKMRIFSQGISSTPKLQGVYWKKDSMNE-KCWHGN-LNATLQQLYTKMVGC 1658

Query: 125  RDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWL 184
              I  L+LS FP+LK+ WHGQ LP + F+NL  L VD+CA +S+AIP+N+L+ ++NL++L
Sbjct: 1659 NGIWSLKLSDFPQLKDRWHGQ-LPFNCFSNLGNLTVDNCAIVSTAIPSNILKFMNNLKYL 1717

Query: 185  EVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFT-GNIIEMPMLW 243
             V+NC+SLE V  LE L+A   +   L P L  L L+DLP+L+   N     I++   L 
Sbjct: 1718 HVKNCESLEGVFDLEGLSAQAGY-DRLLPNLQELHLVDLPELRHIWNRDLPGILDFRNLK 1776

Query: 244  SLTIENCPDMETFISNSV 261
             L + NC  +    S S+
Sbjct: 1777 RLKVHNCSSLRNIFSPSM 1794

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542484|ref|XP_002512305.1| phosphoprotein phosphatase, putative [Ricinus communis] gi|223548266|gb|EEF49757.1| phosphoprotein phosphatase, putative [Ricinus communis]

 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 112/258 (43%), Positives = 153/258 (59%), Gaps = 11/258 (4%)

Query: 7    LVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLE 66
            L  + VS C+ + EI+ + G+E  E+ I F++L+ L LDDL RLT+ C  N  ++FPSLE
Sbjct: 1454 LGEMKVSNCKMLREIVANEGDEM-ESEITFSKLESLRLDDLTRLTTVCSVNCRVKFPSLE 1512

Query: 67   RVFVTRCPNMKTFSQGIVSTPKLHEVQVSKKEEDELHHWEG-NKLNSTIQKRYEEMIGFR 125
             + VT CP M+ FS GI++ PKL +V ++K    E   W     LN+T Q+ Y EM+G  
Sbjct: 1513 ELIVTACPRMEFFSHGIITAPKLEKVSLTK----EGDKWRSVGDLNTTTQQLYREMVGLN 1568

Query: 126  DIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLE 185
             ++ LQLS FP L E WH Q LP  FF NL  LVVD+C+  SS++P+NLL  L+ L  LE
Sbjct: 1569 GVQHLQLSEFPTLVEKWHDQ-LPAYFFYNLKSLVVDNCSFPSSSVPSNLLPFLNELEVLE 1627

Query: 186  VRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFC-NFTGNIIEMPMLWS 244
            VRNCDSL +V   E  N D  + G L P L    LIDLP+L+    + +  I     L  
Sbjct: 1628 VRNCDSLAKVFDFEWSN-DYGYAGHL-PNLKKFHLIDLPRLRHIWDDISSEISGFKNLTV 1685

Query: 245  LTIENCPDMETFISNSVL 262
            L I NC  +  +I N ++
Sbjct: 1686 LNIHNCSSLR-YIFNPII 1702

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358344903|ref|XP_003636525.1| Cc-nbs-lrr resistance protein [Medicago truncatula] gi|355502460|gb|AES83663.1| Cc-nbs-lrr resistance protein [Medicago truncatula]

 Score =  137 bits (345), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 95/225 (42%), Positives = 130/225 (57%), Gaps = 12/225 (5%)

Query: 5    NSLVNLNVSYCEKIEEIIGHVGEEAKEN-RIAFNELKFLELDDLPRLTSFCLENYTLEFP 63
            + L  L +  C  +EEII  V     EN  IAF  L+ L L+ LP L  FC     ++FP
Sbjct: 1418 DKLTVLQIEDCSSLEEIITGV-----ENVDIAFVSLQILNLECLPSLVKFCSSECFMKFP 1472

Query: 64   SLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIG 123
            SLE+V V  CP MK FS G  STP L +V+++  E D   HW+GN LN+TI   +E+ +G
Sbjct: 1473 SLEKVIVGECPRMKIFSAGHTSTPILQKVKIA--ENDSEWHWKGN-LNNTIYNMFEDKVG 1529

Query: 124  FRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAI-PANLLRCLSNLR 182
            F   + LQLS +P LKE+W+GQ    + F +L  LVV  C  +S  +   NLL  L NL 
Sbjct: 1530 FVSFKHLQLSEYPELKELWYGQH-EHNTFRSLKYLVVHKCDFLSDVLFQPNLLEVLMNLE 1588

Query: 183  WLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLK 227
             L+V +C+SLE V  L++  A KE +     +L  L++ +LPKLK
Sbjct: 1589 ELDVEDCNSLEAVFDLKDEFA-KEIVVRNSTQLKKLKISNLPKLK 1632

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|353685492|gb|AER13169.1| Rpp4C3 [Phaseolus vulgaris]

 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 91/252 (36%), Positives = 136/252 (53%), Gaps = 12/252 (4%)

Query: 7    LVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLE 66
            LV L VS+CE +E I+    ++ ++  I F +LK +EL  L  LT FC     L+FPSLE
Sbjct: 1483 LVTLKVSFCESMEIIV----QQEEQQVIEFRQLKAIELVSLESLTCFCSSKKCLKFPSLE 1538

Query: 67   RVFVTRCPNMKTFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRD 126
             + VT CP MKTF +   S P L +V V+  E+D   +WEGN LN+T++K     + + D
Sbjct: 1539 NLLVTDCPKMKTFCEK-QSAPSLRKVHVAAGEKDTW-YWEGN-LNATLRKISTGQVSYED 1595

Query: 127  IERLQLSHFPRLKEIWHGQAL-PVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLE 185
             + L L+     + IW  +A+ P  +F NL KLVV+D     S IP+ +L CL +L  LE
Sbjct: 1596 SKELTLTEDSH-QNIWSKKAVFPYKYFGNLKKLVVEDIKKKESVIPSKILACLKSLEELE 1654

Query: 186  VRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFT-GNIIEMPMLWS 244
            V  C+  + V  + ++  +K +   +  RL  L L +LP L R  N     I+  P L  
Sbjct: 1655 VYGCEKAKVVFDIHDIEMNKTN--GMVSRLKKLDLDELPNLTRVWNKNPQGIVSFPYLQE 1712

Query: 245  LTIENCPDMETF 256
            + + +C  + T 
Sbjct: 1713 VIVSDCSGITTL 1724

Source: Phaseolus vulgaris

Species: Phaseolus vulgaris

Genus: Phaseolus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357439633|ref|XP_003590094.1| Rpp4 candidate [Medicago truncatula] gi|355479142|gb|AES60345.1| Rpp4 candidate [Medicago truncatula]

 Score =  131 bits (329), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 88/226 (38%), Positives = 129/226 (57%), Gaps = 8/226 (3%)

Query: 7   LVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLE 66
           L  + +  C  +E+I+    +E KE  I F  L+ LEL  LPR+  FC     + FP LE
Sbjct: 409 LTTMKIKMCNLLEDIVNGKEDETKE--IEFCSLQSLELISLPRVCRFCSCPCPITFPLLE 466

Query: 67  RVFVTRCPNMKTFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRD 126
            V V  CP M+  S G+ +TP L  VQ+  +E +E +HWEG+ LN +++K +++ + FR+
Sbjct: 467 VVVVKECPRMELLSLGVTNTPNLQIVQI--EESNEENHWEGD-LNRSVKKLFDDKVAFRE 523

Query: 127 IERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAI-PANLLRCLSNLRWLE 185
            + L LS    L++IW+G+ L  + F NL  LVV+ C  +S  + P+N+++ L  L  LE
Sbjct: 524 FKYLALSDHSELEDIWYGR-LDHNVFCNLKHLVVERCDFLSQVLFPSNVVQVLHGLEELE 582

Query: 186 VRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCN 231
           VRNCDSLE V  + +L   KE +     RL  L L  LP LK   N
Sbjct: 583 VRNCDSLEVVFDVRDLKT-KEILIKQRTRLKSLTLSGLPNLKHIWN 627

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358344279|ref|XP_003636218.1| Rpp4 candidate [Medicago truncatula] gi|355502153|gb|AES83356.1| Rpp4 candidate [Medicago truncatula]

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/226 (38%), Positives = 128/226 (56%), Gaps = 11/226 (4%)

Query: 7   LVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLE 66
           L  + +  C  +E+I+   G+E + N I F  L+ LEL  L RL  FC     ++FP LE
Sbjct: 420 LTTMKIKMCNCLEDIVN--GKEDEINDIVFCSLQTLELISLQRLCRFCSCPCPIKFPLLE 477

Query: 67  RVFVTRCPNMKTFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRD 126
            + V  CP M+ FS G+ +T  L  VQ      DE +HWEG+ LN TI+K + + + F  
Sbjct: 478 VIVVKECPRMELFSLGVTNTTNLQNVQT-----DEGNHWEGD-LNRTIKKMFCDKVAFGK 531

Query: 127 IERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAI-PANLLRCLSNLRWLE 185
            + L LS +P LK++W+GQ L  + F NL  LVV+ C  +S  + P+N+++ L  L  LE
Sbjct: 532 FKYLALSDYPELKDVWYGQ-LHCNVFCNLKHLVVERCDFLSHVLFPSNVMQVLQTLEELE 590

Query: 186 VRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCN 231
           V++CDSLE V  ++ + + +E +     +L  L L  LPKLK   N
Sbjct: 591 VKDCDSLEAVFDVKGMKS-QEILIKENTQLKRLTLSTLPKLKHIWN 635

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|328447249|gb|AEB06127.1| Rpp4 candidate R3 [Glycine max]

 Score =  127 bits (320), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 89/261 (34%), Positives = 137/261 (52%), Gaps = 11/261 (4%)

Query: 7    LVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLE 66
            L +L++S CE ++EI+    E+A    I F  L+ + LD LPRL  F   N TL F  LE
Sbjct: 3297 LESLSISECESMKEIVKEEEEDASA-EIVFPSLRTIMLDSLPRLVRFYSGNATLYFMRLE 3355

Query: 67   RVFVTRCPNMKTFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMI--GF 124
               +  C NMKTFS+GI+  P L  ++ S ++ D   H   + LN+TIQ  + + +    
Sbjct: 3356 EATIAECQNMKTFSEGIIEAPLLEGIKTSTEDTDLTSH---HDLNTTIQTLFHQQVEKSA 3412

Query: 125  RDIERLQLSHFPRLKEIWHGQALPV---SFFNNLFKLVVDDCANMSSAIPANLLRCLSNL 181
             DIE L+      L+EIW G  +P+   + FN+L  L+V +C ++S+ IP  LLR L NL
Sbjct: 3413 CDIENLKFGDHHHLEEIWLG-VVPIPSNNCFNSLKSLIVVECESLSNVIPFYLLRFLCNL 3471

Query: 182  RWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGN-IIEMP 240
            + +EV NC S++ +  +E    D +    +   L  L L  LP L+   N   + I+   
Sbjct: 3472 KEIEVSNCQSVKAIFDMEGTEVDMKPASQISLPLKKLILNQLPNLEHIWNLNPDEILSFQ 3531

Query: 241  MLWSLTIENCPDMETFISNSV 261
                + I NC  +++  + SV
Sbjct: 3532 EFQEVCISNCQSLKSLFTTSV 3552

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357439279|ref|XP_003589916.1| Rpp4 candidate [Medicago truncatula] gi|355478964|gb|AES60167.1| Rpp4 candidate [Medicago truncatula]

 Score =  127 bits (320), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 86/226 (38%), Positives = 127/226 (56%), Gaps = 11/226 (4%)

Query: 7   LVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLE 66
           L  + +  C  +E+I+   G+E + N I F  L+ LEL  L RL  FC     ++FP LE
Sbjct: 430 LTTMKIKMCNWLEDIVN--GKEDEINDIVFCSLQTLELISLQRLCRFCSCPCPIKFPLLE 487

Query: 67  RVFVTRCPNMKTFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRD 126
            V V  CP MK FS G+ +T  L  VQ      +E +HWEG+ LN TI+K + + + F  
Sbjct: 488 VVVVKECPRMKLFSLGVTNTTILQNVQT-----NEGNHWEGD-LNRTIKKMFCDKVAFCK 541

Query: 127 IERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAI-PANLLRCLSNLRWLE 185
            + L LS +P LK++W+GQ L  + F NL  L+V+ C  +S  + P+N+++ L  L  LE
Sbjct: 542 FKYLALSDYPELKDVWYGQ-LHCNVFCNLKHLLVERCDFLSHVLFPSNVMQVLQTLEELE 600

Query: 186 VRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCN 231
           V++CDSLE V  ++ + + +  I     +L  L L  LPKLK   N
Sbjct: 601 VKDCDSLEAVFDVKGMKSQEIFIKE-NTQLKRLTLSTLPKLKHIWN 645

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357504319|ref|XP_003622448.1| Resistance protein RGC2 [Medicago truncatula] gi|355497463|gb|AES78666.1| Resistance protein RGC2 [Medicago truncatula]

 Score =  127 bits (320), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 92/260 (35%), Positives = 148/260 (56%), Gaps = 10/260 (3%)

Query: 7   LVNLNVSYCEKIEEIIGHVG-EEAKENRIAFNELKFLELDDLPRLTSFC-LENYTLEFPS 64
           L  + V  C K++EI+ + G EE +   + F++L +LEL  L  LTSFC  +N   +FPS
Sbjct: 337 LAKMKVIEC-KMQEIVTNEGNEEDRMIEVVFSKLVYLELVGLHYLTSFCSYKNCEFKFPS 395

Query: 65  LERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGF 124
           LE + V  C  M+TF+ G  + PKL  + V + EE+E  +WEG+ LN+TIQK++++ I F
Sbjct: 396 LEILVVRECVRMETFTVGQTTAPKLQNIHVIEGEEEEKQYWEGD-LNTTIQKKFKDKISF 454

Query: 125 RDIERLQLSHF-PRLKEIWHGQALPVSF-FNNLFKLVVDDCANMSSAIPANLLRCLSNLR 182
           + +ERL L ++   L+++WH   L   + F NL  LVV    N+  AIP++LL C  NL 
Sbjct: 455 KYMERLNLINYHDLLEQVWHCSDLVQEYMFRNLTSLVVSYRNNLVHAIPSHLLPCFENLD 514

Query: 183 WLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTG-NIIEMPM 241
            LEV +C +++ + +L +    K  +G    RL  L L +LP L+   +     I  + +
Sbjct: 515 ELEVSDCSAVKVIFNLNDTMVTKA-LGKF--RLKKLLLYNLPILEHVWDKDPEGIFFLQV 571

Query: 242 LWSLTIENCPDMETFISNSV 261
           L  +++  C +++     SV
Sbjct: 572 LQEMSVTECDNLKYLFPASV 591

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|328447253|gb|AEB06131.1| Rpp4 candidate R10 [Glycine max]

 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/265 (33%), Positives = 134/265 (50%), Gaps = 13/265 (4%)

Query: 6    SLVNLNVSY---CEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEF 62
            SLV L + Y   CE I+EI+    E      + F  L  L L+ L RL  F   + TL+F
Sbjct: 3071 SLVQLKILYIEKCESIKEIVRKEDESDASEEMIFGRLTKLRLESLGRLVRFYSGDGTLQF 3130

Query: 63   PSLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMI 122
              LE   +  CPNM TFS+G V+ P    ++ S+++ D   H   + LNSTI+  + + +
Sbjct: 3131 SCLEEATIAECPNMNTFSEGFVNAPMFEGIKTSREDSDLTFH---HDLNSTIKMLFHQQV 3187

Query: 123  --GFRDIERLQLSHFPRLKEIWHGQALPV---SFFNNLFKLVVDDCANMSSAIPANLLRC 177
                 DIE L+      L+EIW G  +P+   + FN+L  L+V +C ++S+ IP  LLR 
Sbjct: 3188 EKSASDIENLKFGDHHHLEEIWLG-VVPIPSNNCFNSLKSLIVVECESLSNVIPFYLLRF 3246

Query: 178  LSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGN-I 236
            L NL+ +EV NC S++ +  +E   AD +    +   L  L L  LP L+   N   + I
Sbjct: 3247 LCNLKEIEVSNCQSVKAIFDMEGTEADMKPASQISLPLKKLILNQLPNLEHIWNLNPDEI 3306

Query: 237  IEMPMLWSLTIENCPDMETFISNSV 261
            +       + I NC  +++    SV
Sbjct: 3307 LSFQEFQEVCISNCQSLKSLFPTSV 3331

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

No hits with e-value below 0.001 by BLAST

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	293
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.75
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.69
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.5
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.5
KOG4341	483	consensus F-box protein containing LRR [General fu	99.13
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.96
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.83
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.83
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.83
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.8
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.79
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.79
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.78
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.77
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.69
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.68
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.66
KOG4341	483	consensus F-box protein containing LRR [General fu	98.65
PRK15386	426	type III secretion protein GogB; Provisional	98.56
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.53
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.42
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.38
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.37
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.34
PRK15386	426	type III secretion protein GogB; Provisional	98.34
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.32
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.32
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.27
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.19
KOG1947	482	consensus Leucine rich repeat proteins, some prote	98.15
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.14
KOG4237	498	consensus Extracellular matrix protein slit, conta	97.97
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	97.92
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.9
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.85
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.71
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	97.6
KOG4237	498	consensus Extracellular matrix protein slit, conta	97.43
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.4
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.31
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.04
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	96.97
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	96.91
PLN03150	623	hypothetical protein; Provisional	96.91
PLN03150	623	hypothetical protein; Provisional	96.69
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	96.55
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	96.55
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	96.48
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	96.36
KOG3864	221	consensus Uncharacterized conserved protein [Funct	96.32
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	95.91
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	95.74
KOG3864	221	consensus Uncharacterized conserved protein [Funct	95.71
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.49
KOG2982	418	consensus Uncharacterized conserved protein [Funct	95.12
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	94.69
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	94.4
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.22
KOG2982	418	consensus Uncharacterized conserved protein [Funct	94.09
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	93.91
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	93.29
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	92.67
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	92.49
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	92.21
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	90.42
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	90.32
KOG2123	388	consensus Uncharacterized conserved protein [Funct	89.96
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	87.63
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	85.22
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	84.07
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	81.98
KOG2123	388	consensus Uncharacterized conserved protein [Funct	81.9

>PLN03210 Resistant to P

Probab=99.75  E-value=9.9e-18  Score=170.08  Aligned_cols=84  Identities=21%  Similarity=0.288  Sum_probs=53.5

Q ss_pred             CCCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccC
Q 037794            3 IPNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQG   82 (293)
Q Consensus         3 ~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~   82 (293)
                      .+++|++|++++|..++.+|.         ...+++|+.|++++|..+..++..  ..++++|+.|++++|..++.+|..
T Consensus       632 ~l~~Lk~L~Ls~~~~l~~ip~---------ls~l~~Le~L~L~~c~~L~~lp~s--i~~L~~L~~L~L~~c~~L~~Lp~~  700 (1153)
T PLN03210        632 SLTGLRNIDLRGSKNLKEIPD---------LSMATNLETLKLSDCSSLVELPSS--IQYLNKLEDLDMSRCENLEILPTG  700 (1153)
T ss_pred             cCCCCCEEECCCCCCcCcCCc---------cccCCcccEEEecCCCCccccchh--hhccCCCCEEeCCCCCCcCccCCc
Confidence            455666666666655555553         112667777777777766666654  456677777777777777777655


Q ss_pred             ccCCCCeeEEEecccc
Q 037794           83 IVSTPKLHEVQVSKKE   98 (293)
Q Consensus        83 ~~~~~~L~~L~l~~c~   98 (293)
                      . .+++|+.|.+++|.
T Consensus       701 i-~l~sL~~L~Lsgc~  715 (1153)
T PLN03210        701 I-NLKSLYRLNLSGCS  715 (1153)
T ss_pred             C-CCCCCCEEeCCCCC
Confidence            4 56777777777764

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.69  E-value=1.7e-16  Score=161.16  Aligned_cols=230  Identities=20%  Similarity=0.301  Sum_probs=153.4

Q ss_pred             CCCCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCcccccc
Q 037794            2 GIPNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQ   81 (293)
Q Consensus         2 g~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~   81 (293)
                      +.+++|++|++++|..+..+|...+.        +++|+.|++++|.+++.++...   ++++|+.|.+++|..++.+|.
T Consensus       654 s~l~~Le~L~L~~c~~L~~lp~si~~--------L~~L~~L~L~~c~~L~~Lp~~i---~l~sL~~L~Lsgc~~L~~~p~  722 (1153)
T PLN03210        654 SMATNLETLKLSDCSSLVELPSSIQY--------LNKLEDLDMSRCENLEILPTGI---NLKSLYRLNLSGCSRLKSFPD  722 (1153)
T ss_pred             ccCCcccEEEecCCCCccccchhhhc--------cCCCCEEeCCCCCCcCccCCcC---CCCCCCEEeCCCCCCcccccc
Confidence            56789999999999999999875544        8999999999999999888642   789999999999998888774


Q ss_pred             CccCCCCeeEEEecccccccccc------------ccCcc---chhhhhhhhh-hhccCCCccEEEecCCCCceEeccCC
Q 037794           82 GIVSTPKLHEVQVSKKEEDELHH------------WEGNK---LNSTIQKRYE-EMIGFRDIERLQLSHFPRLKEIWHGQ  145 (293)
Q Consensus        82 ~~~~~~~L~~L~l~~c~~~~~~~------------~~~~~---~~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~  145 (293)
                      .   .++|+.|.+.++. .....            ..+..   +......+.. ....+++|+.|.+++++.+..++.  
T Consensus       723 ~---~~nL~~L~L~~n~-i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~--  796 (1153)
T PLN03210        723 I---STNISWLDLDETA-IEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPS--  796 (1153)
T ss_pred             c---cCCcCeeecCCCc-cccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccCh--
Confidence            3   4567788777652 11110            00000   0000000000 112346788888888876666552  


Q ss_pred             CCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCccccccccccc-cccc--cc-----cc--CCCCCCcc
Q 037794          146 ALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLE-ELNA--DK-----EH--IGPLFPRL  215 (293)
Q Consensus       146 ~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~-~~~~--~~-----~~--~~~~f~~L  215 (293)
                        .+..+++|+.|++++|..++.+ |...  .+++|+.|++.+|..+..++... .+..  ..     ..  ....+++|
T Consensus       797 --si~~L~~L~~L~Ls~C~~L~~L-P~~~--~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L  871 (1153)
T PLN03210        797 --SIQNLHKLEHLEIENCINLETL-PTGI--NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNL  871 (1153)
T ss_pred             --hhhCCCCCCEEECCCCCCcCee-CCCC--CccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCC
Confidence              2557788888888888888764 6542  57888888888887776654210 0000  00     00  01124788


Q ss_pred             cEEecCCCCCCceeccCCCccccCCCcceEeeecCCCcccc
Q 037794          216 FILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETF  256 (293)
Q Consensus       216 ~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l  256 (293)
                      +.|.+.+|++++.++   .....+++|+.+++++|++|+.+
T Consensus       872 ~~L~L~~C~~L~~l~---~~~~~L~~L~~L~l~~C~~L~~~  909 (1153)
T PLN03210        872 SFLDMNGCNNLQRVS---LNISKLKHLETVDFSDCGALTEA  909 (1153)
T ss_pred             CEEECCCCCCcCccC---cccccccCCCeeecCCCcccccc
Confidence            888888888888775   34567788888888888888765

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.50  E-value=9.3e-14  Score=139.87  Aligned_cols=83  Identities=16%  Similarity=0.095  Sum_probs=44.2

Q ss_pred             CCCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccC
Q 037794            3 IPNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQG   82 (293)
Q Consensus         3 ~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~   82 (293)
                      .+++|++|+++++.....+|..          .+++|++|+++++.....++..  ...+++|+.|++++|.....+|..
T Consensus       116 ~l~~L~~L~Ls~n~l~~~~p~~----------~l~~L~~L~Ls~n~~~~~~p~~--~~~l~~L~~L~L~~n~l~~~~p~~  183 (968)
T PLN00113        116 TSSSLRYLNLSNNNFTGSIPRG----------SIPNLETLDLSNNMLSGEIPND--IGSFSSLKVLDLGGNVLVGKIPNS  183 (968)
T ss_pred             cCCCCCEEECcCCccccccCcc----------ccCCCCEEECcCCcccccCChH--HhcCCCCCEEECccCcccccCChh
Confidence            5677888888877544444432          1556666666555332223322  334555555555555433344544


Q ss_pred             ccCCCCeeEEEeccc
Q 037794           83 IVSTPKLHEVQVSKK   97 (293)
Q Consensus        83 ~~~~~~L~~L~l~~c   97 (293)
                      +..+++|+.|++++|
T Consensus       184 ~~~l~~L~~L~L~~n  198 (968)
T PLN00113        184 LTNLTSLEFLTLASN  198 (968)
T ss_pred             hhhCcCCCeeeccCC
Confidence            555555555555544

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.50  E-value=6.6e-14  Score=140.92  Aligned_cols=86  Identities=19%  Similarity=0.171  Sum_probs=53.9

Q ss_pred             CCCCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCcccccc
Q 037794            2 GIPNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQ   81 (293)
Q Consensus         2 g~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~   81 (293)
                      +.+++|++|++++|.....+|...+.        +++|++|+++++.....++..  ...+++|+.|++++|.....+|.
T Consensus       137 ~~l~~L~~L~Ls~n~~~~~~p~~~~~--------l~~L~~L~L~~n~l~~~~p~~--~~~l~~L~~L~L~~n~l~~~~p~  206 (968)
T PLN00113        137 GSIPNLETLDLSNNMLSGEIPNDIGS--------FSSLKVLDLGGNVLVGKIPNS--LTNLTSLEFLTLASNQLVGQIPR  206 (968)
T ss_pred             cccCCCCEEECcCCcccccCChHHhc--------CCCCCEEECccCcccccCChh--hhhCcCCCeeeccCCCCcCcCCh
Confidence            45778888888887544455543332        777777777776543334432  34667777777776654445666


Q ss_pred             CccCCCCeeEEEeccc
Q 037794           82 GIVSTPKLHEVQVSKK   97 (293)
Q Consensus        82 ~~~~~~~L~~L~l~~c   97 (293)
                      .+..+++|+.|.+.++
T Consensus       207 ~l~~l~~L~~L~L~~n  222 (968)
T PLN00113        207 ELGQMKSLKWIYLGYN  222 (968)
T ss_pred             HHcCcCCccEEECcCC
Confidence            6666677777776655

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.13  E-value=1.7e-12  Score=113.34  Aligned_cols=236  Identities=19%  Similarity=0.203  Sum_probs=118.6

Q ss_pred             CCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccc--cccC
Q 037794            5 NSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKT--FSQG   82 (293)
Q Consensus         5 ~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~--lp~~   82 (293)
                      |++++|.+.+|..+++.--.....      .|++|+.+.+..|+++++.........|++|++++++.|+.+.+  +-..
T Consensus       164 pnIehL~l~gc~~iTd~s~~sla~------~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~  237 (483)
T KOG4341|consen  164 PNIEHLALYGCKKITDSSLLSLAR------YCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQAL  237 (483)
T ss_pred             CchhhhhhhcceeccHHHHHHHHH------hcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHH
Confidence            445555555554444332222111      25566666666666665555544455666666666666665553  2122


Q ss_pred             ccCCCCeeEEEecccccccc--cc-ccCc-----cch------hhhhhhhhhhccCCCccEEEecCCCCceEeccCCCCC
Q 037794           83 IVSTPKLHEVQVSKKEEDEL--HH-WEGN-----KLN------STIQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALP  148 (293)
Q Consensus        83 ~~~~~~L~~L~l~~c~~~~~--~~-~~~~-----~~~------~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~  148 (293)
                      ...+..++.+...||.+...  .. .++.     .++      -....++.....+..|+.+..++|..+++....+ + 
T Consensus       238 ~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~a-L-  315 (483)
T KOG4341|consen  238 QRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWA-L-  315 (483)
T ss_pred             hccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHH-H-
Confidence            23344455555555532111  00 0000     000      0001122222345666677777766655433222 1 


Q ss_pred             cccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCce
Q 037794          149 VSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKR  228 (293)
Q Consensus       149 ~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~  228 (293)
                      ....++|+.|.+..|..+.+.--.....+.+.|+.+++.+|-.+..-. ......       .+|.|+.+.+++|..+++
T Consensus       316 g~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~t-L~sls~-------~C~~lr~lslshce~itD  387 (483)
T KOG4341|consen  316 GQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGT-LASLSR-------NCPRLRVLSLSHCELITD  387 (483)
T ss_pred             hcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhh-Hhhhcc-------CCchhccCChhhhhhhhh
Confidence            123378888888888877665333345567778888877776543321 011111       237788888887777765


Q ss_pred             ecc--CCCccccCCCcceEeeecCCCcccc
Q 037794          229 FCN--FTGNIIEMPMLWSLTIENCPDMETF  256 (293)
Q Consensus       229 ~~~--~~~~~~~l~~L~~L~i~~C~~L~~l  256 (293)
                      -..  .......+..|+.+++++||.++.-
T Consensus       388 ~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~  417 (483)
T KOG4341|consen  388 EGIRHLSSSSCSLEGLEVLELDNCPLITDA  417 (483)
T ss_pred             hhhhhhhhccccccccceeeecCCCCchHH
Confidence            311  0022244556777777777766543

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.96  E-value=1.4e-11  Score=112.82  Aligned_cols=160  Identities=21%  Similarity=0.219  Sum_probs=87.7

Q ss_pred             cccCCCcceEeEcCCCCccccccCccCCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCCCCc
Q 037794           59 TLEFPSLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRL  138 (293)
Q Consensus        59 ~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l  138 (293)
                      ...+.||..++++ |+.++.+|..+..+++|++|.+++.               .+.++........+|++|+++. +.+
T Consensus       218 ld~l~NL~dvDlS-~N~Lp~vPecly~l~~LrrLNLS~N---------------~iteL~~~~~~W~~lEtLNlSr-NQL  280 (1255)
T KOG0444|consen  218 LDDLHNLRDVDLS-ENNLPIVPECLYKLRNLRRLNLSGN---------------KITELNMTEGEWENLETLNLSR-NQL  280 (1255)
T ss_pred             hhhhhhhhhcccc-ccCCCcchHHHhhhhhhheeccCcC---------------ceeeeeccHHHHhhhhhhcccc-chh
Confidence            3355566666665 3556666666666666666666643               2222222223344555555554 223


Q ss_pred             eEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEE
Q 037794          139 KEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFIL  218 (293)
Q Consensus       139 ~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L  218 (293)
                      +.+|..    .-.++.|++|++.+...--+-+|. +++++.+|+.++..+ ++++-+|  +++..       + ++|+.|
T Consensus       281 t~LP~a----vcKL~kL~kLy~n~NkL~FeGiPS-GIGKL~~Levf~aan-N~LElVP--EglcR-------C-~kL~kL  344 (1255)
T KOG0444|consen  281 TVLPDA----VCKLTKLTKLYANNNKLTFEGIPS-GIGKLIQLEVFHAAN-NKLELVP--EGLCR-------C-VKLQKL  344 (1255)
T ss_pred             ccchHH----HhhhHHHHHHHhccCcccccCCcc-chhhhhhhHHHHhhc-cccccCc--hhhhh-------h-HHHHHh
Confidence            333311    223455666666554433333343 355566666666665 5555555  33332       3 777777


Q ss_pred             ecCCCCCCceeccCCCccccCCCcceEeeecCCCccc
Q 037794          219 RLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMET  255 (293)
Q Consensus       219 ~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~~L~~  255 (293)
                      .+.+ ..+..++   ..+..++.|+.|+++..|+|--
T Consensus       345 ~L~~-NrLiTLP---eaIHlL~~l~vLDlreNpnLVM  377 (1255)
T KOG0444|consen  345 KLDH-NRLITLP---EAIHLLPDLKVLDLRENPNLVM  377 (1255)
T ss_pred             cccc-cceeech---hhhhhcCCcceeeccCCcCccC
Confidence            7754 5565555   6777788888888888887743

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.83  E-value=2.6e-09  Score=105.01  Aligned_cols=239  Identities=17%  Similarity=0.223  Sum_probs=147.5

Q ss_pred             CCCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccC
Q 037794            3 IPNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQG   82 (293)
Q Consensus         3 ~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~   82 (293)
                      .++.|+.|++++|..+.++|..++.        +-+|+.|++++. .+.++|..  ...+..|.+|++.....+..+|..
T Consensus       569 ~m~~LrVLDLs~~~~l~~LP~~I~~--------Li~LryL~L~~t-~I~~LP~~--l~~Lk~L~~Lnl~~~~~l~~~~~i  637 (889)
T KOG4658|consen  569 SLPLLRVLDLSGNSSLSKLPSSIGE--------LVHLRYLDLSDT-GISHLPSG--LGNLKKLIYLNLEVTGRLESIPGI  637 (889)
T ss_pred             hCcceEEEECCCCCccCcCChHHhh--------hhhhhcccccCC-CccccchH--HHHHHhhheeccccccccccccch
Confidence            4778888899888888888886665        777888887664 45566665  556667777777766666555444


Q ss_pred             ccCCCCeeEEEeccccc-ccccc-----------------ccC---ccc------hhhh----------hhhhhhhccCC
Q 037794           83 IVSTPKLHEVQVSKKEE-DELHH-----------------WEG---NKL------NSTI----------QKRYEEMIGFR  125 (293)
Q Consensus        83 ~~~~~~L~~L~l~~c~~-~~~~~-----------------~~~---~~~------~~~~----------~~l~~~~~~~~  125 (293)
                      ...+++|+.|.+..... .....                 ...   ..+      ....          ..+......+.
T Consensus       638 ~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~  717 (889)
T KOG4658|consen  638 LLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLG  717 (889)
T ss_pred             hhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeeccccccc
Confidence            45577777776654420 00000                 000   000      0000          11112345678


Q ss_pred             CccEEEecCCCCceEe--ccCCCCCcc-cCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccc
Q 037794          126 DIERLQLSHFPRLKEI--WHGQALPVS-FFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELN  202 (293)
Q Consensus       126 ~L~~L~l~~~~~l~~~--~~~~~~~~~-~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~  202 (293)
                      +|++|.|.+|......  |... .... +|+++..+.+.+|...++..+   ..-.++|+.|.+..|..++++.......
T Consensus       718 ~L~~L~i~~~~~~e~~~~~~~~-~~~~~~f~~l~~~~~~~~~~~r~l~~---~~f~~~L~~l~l~~~~~~e~~i~~~k~~  793 (889)
T KOG4658|consen  718 NLEELSILDCGISEIVIEWEES-LIVLLCFPNLSKVSILNCHMLRDLTW---LLFAPHLTSLSLVSCRLLEDIIPKLKAL  793 (889)
T ss_pred             CcceEEEEcCCCchhhcccccc-cchhhhHHHHHHHHhhccccccccch---hhccCcccEEEEecccccccCCCHHHHh
Confidence            8888888888754321  2221 1111 267888888888887776422   2346899999999999998887432221


Q ss_pred             cccccCCCCCCcccEE-ecCCCCCCceeccCCCccccCCCcceEeeecCCCcccccccc
Q 037794          203 ADKEHIGPLFPRLFIL-RLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNS  260 (293)
Q Consensus       203 ~~~~~~~~~f~~L~~L-~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~p~~  260 (293)
                      .........|.++..+ .+.+..++..+...|   ..++.|+.+.+..||+++++ |..
T Consensus       794 ~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~---l~~~~l~~~~ve~~p~l~~~-P~~  848 (889)
T KOG4658|consen  794 LELKELILPFNKLEGLRMLCSLGGLPQLYWLP---LSFLKLEELIVEECPKLGKL-PLL  848 (889)
T ss_pred             hhcccEEecccccccceeeecCCCCceeEecc---cCccchhheehhcCcccccC-ccc
Confidence            1111112245777777 588888888776544   45566999999999999998 743

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.83  E-value=1.5e-10  Score=106.08  Aligned_cols=185  Identities=16%  Similarity=0.195  Sum_probs=106.0

Q ss_pred             cccCCCcceEeEcCCCCccccccCccCCCCeeEEEeccccccccc------c-----ccCccchhhhhhhhhhhccCCCc
Q 037794           59 TLEFPSLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKKEEDELH------H-----WEGNKLNSTIQKRYEEMIGFRDI  127 (293)
Q Consensus        59 ~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~L~~L~l~~c~~~~~~------~-----~~~~~~~~~~~~l~~~~~~~~~L  127 (293)
                      ++++..|..|+++. ++++..|..+....++.-|.++... ....      .     +-.. .+..+..+++.+..+.+|
T Consensus        99 iF~l~dLt~lDLSh-NqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDL-S~NrLe~LPPQ~RRL~~L  175 (1255)
T KOG0444|consen   99 IFRLKDLTILDLSH-NQLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDL-SNNRLEMLPPQIRRLSML  175 (1255)
T ss_pred             hcccccceeeecch-hhhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhcc-ccchhhhcCHHHHHHhhh
Confidence            44556666666665 4677777777777777777776531 1110      0     0000 124556677777777888


Q ss_pred             cEEEecCCCCceEeccCC--------------C------CC--cccCCCccEEEeccCCCCCccCChhHHhccCCCCeEE
Q 037794          128 ERLQLSHFPRLKEIWHGQ--------------A------LP--VSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLE  185 (293)
Q Consensus       128 ~~L~l~~~~~l~~~~~~~--------------~------~~--~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~  185 (293)
                      ++|.+++.| +...-..+              .      +|  +..+.||..++++.. .+..+ |+. +-.+++|+.|+
T Consensus       176 qtL~Ls~NP-L~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N-~Lp~v-Pec-ly~l~~LrrLN  251 (1255)
T KOG0444|consen  176 QTLKLSNNP-LNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN-NLPIV-PEC-LYKLRNLRRLN  251 (1255)
T ss_pred             hhhhcCCCh-hhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc-CCCcc-hHH-Hhhhhhhheec
Confidence            888887754 22111111              0      11  334556666666433 34332 443 45566777777


Q ss_pred             ecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceeccCCCccccCCCcceEeeecCCCcccc-ccccchhh
Q 037794          186 VRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETF-ISNSVLHV  264 (293)
Q Consensus       186 i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l-~p~~l~~l  264 (293)
                      +++ +.++++.-  +..        .+.+|++|.++. ..++.++   ..+..++.|++|.+.+. +|..= +|+++|++
T Consensus       252 LS~-N~iteL~~--~~~--------~W~~lEtLNlSr-NQLt~LP---~avcKL~kL~kLy~n~N-kL~FeGiPSGIGKL  315 (1255)
T KOG0444|consen  252 LSG-NKITELNM--TEG--------EWENLETLNLSR-NQLTVLP---DAVCKLTKLTKLYANNN-KLTFEGIPSGIGKL  315 (1255)
T ss_pred             cCc-Cceeeeec--cHH--------HHhhhhhhcccc-chhccch---HHHhhhHHHHHHHhccC-cccccCCccchhhh
Confidence            666 44544421  111        226777777776 4666655   66778888888877764 56442 59999998


Q ss_pred             cc
Q 037794          265 TT  266 (293)
Q Consensus       265 ~~  266 (293)
                      ..
T Consensus       316 ~~  317 (1255)
T KOG0444|consen  316 IQ  317 (1255)
T ss_pred             hh
Confidence            75

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.83  E-value=8.7e-10  Score=100.41  Aligned_cols=35  Identities=26%  Similarity=0.280  Sum_probs=19.5

Q ss_pred             CcccEEecCCCCCCceeccCCCccccCCCcceEeeecC
Q 037794          213 PRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENC  250 (293)
Q Consensus       213 ~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C  250 (293)
                      ++|+.|.+.+ .+++.|+.  ..+..+++|++|++.+.
T Consensus       392 ~~LrkL~l~g-Nqlk~I~k--rAfsgl~~LE~LdL~~N  426 (873)
T KOG4194|consen  392 PSLRKLRLTG-NQLKSIPK--RAFSGLEALEHLDLGDN  426 (873)
T ss_pred             hhhhheeecC-ceeeecch--hhhccCcccceecCCCC
Confidence            5666666655 45555554  34455555666655554

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.80  E-value=1.3e-10  Score=90.42  Aligned_cols=168  Identities=17%  Similarity=0.229  Sum_probs=117.3

Q ss_pred             ccCCCcceEeEcCCCCccccccCccCCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCCCCce
Q 037794           60 LEFPSLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRLK  139 (293)
Q Consensus        60 ~~~~~L~~L~i~~c~~l~~lp~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~  139 (293)
                      +.+.+..+|.++. .+++.+|..++.+.+|+.|.+.               |..+++++..+.+++.|+.|++. ++++.
T Consensus        30 f~~s~ITrLtLSH-NKl~~vppnia~l~nlevln~~---------------nnqie~lp~~issl~klr~lnvg-mnrl~   92 (264)
T KOG0617|consen   30 FNMSNITRLTLSH-NKLTVVPPNIAELKNLEVLNLS---------------NNQIEELPTSISSLPKLRILNVG-MNRLN   92 (264)
T ss_pred             cchhhhhhhhccc-CceeecCCcHHHhhhhhhhhcc---------------cchhhhcChhhhhchhhhheecc-hhhhh
Confidence            3556667777776 5777888888888888888775               35677788778888888888874 45565


Q ss_pred             EeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEe
Q 037794          140 EIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILR  219 (293)
Q Consensus       140 ~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~  219 (293)
                      ..+    ..+++|+-|+.|++.+...-....|-. +-.++.|+.|.+.+ +.++-++..  .+       .+ .+|+.|.
T Consensus        93 ~lp----rgfgs~p~levldltynnl~e~~lpgn-ff~m~tlralyl~d-ndfe~lp~d--vg-------~l-t~lqil~  156 (264)
T KOG0617|consen   93 ILP----RGFGSFPALEVLDLTYNNLNENSLPGN-FFYMTTLRALYLGD-NDFEILPPD--VG-------KL-TNLQILS  156 (264)
T ss_pred             cCc----cccCCCchhhhhhccccccccccCCcc-hhHHHHHHHHHhcC-CCcccCChh--hh-------hh-cceeEEe
Confidence            555    226788888888888877666655655 44477777787777 445555421  11       13 6777777


Q ss_pred             cCCCCCCceeccCCCccccCCCcceEeeecCCCccccccccchhhcc
Q 037794          220 LIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVLHVTT  266 (293)
Q Consensus       220 l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~p~~l~~l~~  266 (293)
                      +.+- .+-+++   ..++.++.|++|+|.+. .|+.+ |+.++.+..
T Consensus       157 lrdn-dll~lp---keig~lt~lrelhiqgn-rl~vl-ppel~~l~l  197 (264)
T KOG0617|consen  157 LRDN-DLLSLP---KEIGDLTRLRELHIQGN-RLTVL-PPELANLDL  197 (264)
T ss_pred             eccC-chhhCc---HHHHHHHHHHHHhcccc-eeeec-Chhhhhhhh
Confidence            7763 344444   56678888999999985 78888 888888776

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.79  E-value=3.6e-09  Score=96.50  Aligned_cols=40  Identities=15%  Similarity=0.067  Sum_probs=22.2

Q ss_pred             CcccEEecCCCCCCceeccCCCccccCCCcceEeeecCCCcccc
Q 037794          213 PRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETF  256 (293)
Q Consensus       213 ~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l  256 (293)
                      .+|+.|++++ ..+..|..  ++-...++|+.|++++. +++.+
T Consensus       293 t~L~~L~lS~-NaI~rih~--d~WsftqkL~~LdLs~N-~i~~l  332 (873)
T KOG4194|consen  293 TSLEQLDLSY-NAIQRIHI--DSWSFTQKLKELDLSSN-RITRL  332 (873)
T ss_pred             chhhhhccch-hhhheeec--chhhhcccceeEecccc-ccccC
Confidence            5566666655 34555433  33334566666666664 56666

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.79  E-value=1.5e-08  Score=98.13  Aligned_cols=16  Identities=13%  Similarity=0.387  Sum_probs=8.1

Q ss_pred             CCcceEeeecCCCcccc
Q 037794          240 PMLWSLTIENCPDMETF  256 (293)
Q Consensus       240 ~~L~~L~i~~C~~L~~l  256 (293)
                      ++|++|+|++| +|+.+
T Consensus       367 ~~L~~LdLs~N-~Lt~L  382 (754)
T PRK15370        367 PTITTLDVSRN-ALTNL  382 (754)
T ss_pred             CCcCEEECCCC-cCCCC
Confidence            44555555554 34444

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.78  E-value=4e-08  Score=95.09  Aligned_cols=57  Identities=18%  Similarity=0.191  Sum_probs=31.7

Q ss_pred             CCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccc
Q 037794            5 NSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFS   80 (293)
Q Consensus         5 ~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp   80 (293)
                      ++|+.|.+.++ +++.+|..           .++|++|+++++ .++.++.     ..++|+.|++.++ .+..+|
T Consensus       222 ~~L~~L~L~~N-~Lt~LP~l-----------p~~Lk~LdLs~N-~LtsLP~-----lp~sL~~L~Ls~N-~L~~Lp  278 (788)
T PRK15387        222 AHITTLVIPDN-NLTSLPAL-----------PPELRTLEVSGN-QLTSLPV-----LPPGLLELSIFSN-PLTHLP  278 (788)
T ss_pred             cCCCEEEccCC-cCCCCCCC-----------CCCCcEEEecCC-ccCcccC-----cccccceeeccCC-chhhhh
Confidence            35677777664 56666541           566777777665 4454542     1345566665554 244443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.77  E-value=8.4e-09  Score=99.92  Aligned_cols=197  Identities=16%  Similarity=0.210  Sum_probs=99.3

Q ss_pred             CCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccCcc
Q 037794            5 NSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGIV   84 (293)
Q Consensus         5 ~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~   84 (293)
                      ++|+.|+++++ +++.+|...          +++|+.|+++++ .+++++..    -.++|+.|++++| .+..+|..+ 
T Consensus       199 ~~L~~L~Ls~N-~LtsLP~~l----------~~nL~~L~Ls~N-~LtsLP~~----l~~~L~~L~Ls~N-~L~~LP~~l-  260 (754)
T PRK15370        199 EQITTLILDNN-ELKSLPENL----------QGNIKTLYANSN-QLTSIPAT----LPDTIQEMELSIN-RITELPERL-  260 (754)
T ss_pred             cCCcEEEecCC-CCCcCChhh----------ccCCCEEECCCC-ccccCChh----hhccccEEECcCC-ccCcCChhH-
Confidence            46778888775 666666532          456777777665 34555432    1235666666654 244444332 


Q ss_pred             CCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCCCCceEeccCC---------------CCCc
Q 037794           85 STPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQ---------------ALPV  149 (293)
Q Consensus        85 ~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~---------------~~~~  149 (293)
                       ..+|+.|.++++               .+..++..+  .++|+.|+++++ .++.++...               .+|.
T Consensus       261 -~s~L~~L~Ls~N---------------~L~~LP~~l--~~sL~~L~Ls~N-~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~  321 (754)
T PRK15370        261 -PSALQSLDLFHN---------------KISCLPENL--PEELRYLSVYDN-SIRTLPAHLPSGITHLNVQSNSLTALPE  321 (754)
T ss_pred             -hCCCCEEECcCC---------------ccCcccccc--CCCCcEEECCCC-ccccCcccchhhHHHHHhcCCccccCCc
Confidence             134555555532               011111111  123444444332 122221100               0111


Q ss_pred             ccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCcee
Q 037794          150 SFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRF  229 (293)
Q Consensus       150 ~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~  229 (293)
                      ..+++|+.|++.+|. +.. +|.. +  .++|+.|++.++ .++.++.            ...++|++|++.++ .++.+
T Consensus       322 ~l~~sL~~L~Ls~N~-Lt~-LP~~-l--~~sL~~L~Ls~N-~L~~LP~------------~lp~~L~~LdLs~N-~Lt~L  382 (754)
T PRK15370        322 TLPPGLKTLEAGENA-LTS-LPAS-L--PPELQVLDVSKN-QITVLPE------------TLPPTITTLDVSRN-ALTNL  382 (754)
T ss_pred             cccccceeccccCCc-ccc-CChh-h--cCcccEEECCCC-CCCcCCh------------hhcCCcCEEECCCC-cCCCC
Confidence            123567777777664 333 2543 2  257777777774 3444431            12367888888875 46555


Q ss_pred             ccCCCccccCCCcceEeeecCCCccccccccchhh
Q 037794          230 CNFTGNIIEMPMLWSLTIENCPDMETFISNSVLHV  264 (293)
Q Consensus       230 ~~~~~~~~~l~~L~~L~i~~C~~L~~l~p~~l~~l  264 (293)
                      +.   .+.  ++|+.|+++++ +|+.+ |.++..+
T Consensus       383 P~---~l~--~sL~~LdLs~N-~L~~L-P~sl~~~  410 (754)
T PRK15370        383 PE---NLP--AALQIMQASRN-NLVRL-PESLPHF  410 (754)
T ss_pred             CH---hHH--HHHHHHhhccC-CcccC-chhHHHH
Confidence            42   222  36777888876 67777 6655443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.69  E-value=5.6e-09  Score=92.09  Aligned_cols=212  Identities=13%  Similarity=0.169  Sum_probs=129.4

Q ss_pred             CCCCcceEeccccccceEeccccccccccccccccccceeeccccccccccc-cccccccCCCcceEeEcCCCCccc-cc
Q 037794            3 IPNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFC-LENYTLEFPSLERVFVTRCPNMKT-FS   80 (293)
Q Consensus         3 ~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~~~~L~~L~i~~c~~l~~-lp   80 (293)
                      ++.+|+++.+++| .+..++...      ....||+++.|+++..- +.+|. ....+..+|+|+.|+++.. .+.- +.
T Consensus       119 n~kkL~~IsLdn~-~V~~~~~~~------~~k~~~~v~~LdLS~NL-~~nw~~v~~i~eqLp~Le~LNls~N-rl~~~~~  189 (505)
T KOG3207|consen  119 NLKKLREISLDNY-RVEDAGIEE------YSKILPNVRDLDLSRNL-FHNWFPVLKIAEQLPSLENLNLSSN-RLSNFIS  189 (505)
T ss_pred             hHHhhhheeecCc-cccccchhh------hhhhCCcceeecchhhh-HHhHHHHHHHHHhcccchhcccccc-cccCCcc
Confidence            4567888888776 444444321      23359999999998842 22332 2333568999999999874 3331 11


Q ss_pred             -cCccCCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEE
Q 037794           81 -QGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLV  159 (293)
Q Consensus        81 -~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~  159 (293)
                       .....+++|+.|.+++|+           +  ....+-.....||+|+.|.+.+...+....    .+...+..|++|+
T Consensus       190 s~~~~~l~~lK~L~l~~CG-----------l--s~k~V~~~~~~fPsl~~L~L~~N~~~~~~~----~~~~i~~~L~~Ld  252 (505)
T KOG3207|consen  190 SNTTLLLSHLKQLVLNSCG-----------L--SWKDVQWILLTFPSLEVLYLEANEIILIKA----TSTKILQTLQELD  252 (505)
T ss_pred             ccchhhhhhhheEEeccCC-----------C--CHHHHHHHHHhCCcHHHhhhhcccccceec----chhhhhhHHhhcc
Confidence             112357899999999991           1  122233334679999999998864333222    3344568899999


Q ss_pred             eccCCCCCccCC-hhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceeccCCCcccc
Q 037794          160 VDDCANMSSAIP-ANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIE  238 (293)
Q Consensus       160 i~~c~~l~~~~p-~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~  238 (293)
                      +++......  + -.....+|.|..|++.. ..+.++...+   .........||+|++|.+.. .+++++... ..+..
T Consensus       253 Ls~N~li~~--~~~~~~~~l~~L~~Lnls~-tgi~si~~~d---~~s~~kt~~f~kL~~L~i~~-N~I~~w~sl-~~l~~  324 (505)
T KOG3207|consen  253 LSNNNLIDF--DQGYKVGTLPGLNQLNLSS-TGIASIAEPD---VESLDKTHTFPKLEYLNISE-NNIRDWRSL-NHLRT  324 (505)
T ss_pred             ccCCccccc--ccccccccccchhhhhccc-cCcchhcCCC---ccchhhhcccccceeeeccc-Ccccccccc-chhhc
Confidence            998876652  2 13456688888888887 3444443211   11122224679999999987 455443221 35556


Q ss_pred             CCCcceEeee
Q 037794          239 MPMLWSLTIE  248 (293)
Q Consensus       239 l~~L~~L~i~  248 (293)
                      +++|+.|.+.
T Consensus       325 l~nlk~l~~~  334 (505)
T KOG3207|consen  325 LENLKHLRIT  334 (505)
T ss_pred             cchhhhhhcc
Confidence            6777776654

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.68  E-value=1.4e-07  Score=91.37  Aligned_cols=200  Identities=21%  Similarity=0.155  Sum_probs=109.4

Q ss_pred             cceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccCccCC
Q 037794            7 LVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGIVST   86 (293)
Q Consensus         7 L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~~   86 (293)
                      -..|+++++ .++.+|...          .++|+.|.+.++ +++.++.     ..++|+.|+++++ +++.+|..   .
T Consensus       203 ~~~LdLs~~-~LtsLP~~l----------~~~L~~L~L~~N-~Lt~LP~-----lp~~Lk~LdLs~N-~LtsLP~l---p  261 (788)
T PRK15387        203 NAVLNVGES-GLTTLPDCL----------PAHITTLVIPDN-NLTSLPA-----LPPELRTLEVSGN-QLTSLPVL---P  261 (788)
T ss_pred             CcEEEcCCC-CCCcCCcch----------hcCCCEEEccCC-cCCCCCC-----CCCCCcEEEecCC-ccCcccCc---c
Confidence            456788876 777787643          357899998874 5666664     3689999999885 78877743   4


Q ss_pred             CCeeEEEeccccccccc----------cccCccchhhhhhhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCcc
Q 037794           87 PKLHEVQVSKKEEDELH----------HWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLF  156 (293)
Q Consensus        87 ~~L~~L~l~~c~~~~~~----------~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~  156 (293)
                      ++|+.|.+.++. ....          .+.+.    .+..++.   ..++|+.|+++++ .++.++.   .|    .+|+
T Consensus       262 ~sL~~L~Ls~N~-L~~Lp~lp~~L~~L~Ls~N----~Lt~LP~---~p~~L~~LdLS~N-~L~~Lp~---lp----~~L~  325 (788)
T PRK15387        262 PGLLELSIFSNP-LTHLPALPSGLCKLWIFGN----QLTSLPV---LPPGLQELSVSDN-QLASLPA---LP----SELC  325 (788)
T ss_pred             cccceeeccCCc-hhhhhhchhhcCEEECcCC----ccccccc---cccccceeECCCC-ccccCCC---Cc----cccc
Confidence            678888887651 1100          00000    1111111   2356677777663 3443321   11    3455


Q ss_pred             EEEeccCCCCCccCChhHHhccCCCCeEEecCccccccccccc-ccc-------cccccCCCCCCcccEEecCCCCCCce
Q 037794          157 KLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLE-ELN-------ADKEHIGPLFPRLFILRLIDLPKLKR  228 (293)
Q Consensus       157 ~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~-~~~-------~~~~~~~~~f~~L~~L~l~~~~~l~~  228 (293)
                      .|++++|.. .. +|.  +  ..+|+.|++.+ +.++.++... ...       .....+. ..++|+.|++.+. .++.
T Consensus       326 ~L~Ls~N~L-~~-LP~--l--p~~Lq~LdLS~-N~Ls~LP~lp~~L~~L~Ls~N~L~~LP~-l~~~L~~LdLs~N-~Lt~  396 (788)
T PRK15387        326 KLWAYNNQL-TS-LPT--L--PSGLQELSVSD-NQLASLPTLPSELYKLWAYNNRLTSLPA-LPSGLKELIVSGN-RLTS  396 (788)
T ss_pred             ccccccCcc-cc-ccc--c--ccccceEecCC-CccCCCCCCCcccceehhhccccccCcc-cccccceEEecCC-cccC
Confidence            556555432 22 232  1  13677777776 4455544210 000       0000111 2246777777763 5655


Q ss_pred             eccCCCccccCCCcceEeeecCCCcccccccc
Q 037794          229 FCNFTGNIIEMPMLWSLTIENCPDMETFISNS  260 (293)
Q Consensus       229 ~~~~~~~~~~l~~L~~L~i~~C~~L~~l~p~~  260 (293)
                      ++..      .++|+.|+++++ +|+.+ |..
T Consensus       397 LP~l------~s~L~~LdLS~N-~LssI-P~l  420 (788)
T PRK15387        397 LPVL------PSELKELMVSGN-RLTSL-PML  420 (788)
T ss_pred             CCCc------ccCCCEEEccCC-cCCCC-Ccc
Confidence            5432      267888888887 57777 543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.66  E-value=4.2e-11  Score=104.37  Aligned_cols=223  Identities=19%  Similarity=0.198  Sum_probs=106.0

Q ss_pred             CCCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccC
Q 037794            3 IPNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQG   82 (293)
Q Consensus         3 ~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~   82 (293)
                      ++..|.+|++.+. ++.+.|+..+.        +.+++.+..+.. ++..+|..  ....++|.+++++.. .+..+|..
T Consensus        66 nL~~l~vl~~~~n-~l~~lp~aig~--------l~~l~~l~vs~n-~ls~lp~~--i~s~~~l~~l~~s~n-~~~el~~~  132 (565)
T KOG0472|consen   66 NLACLTVLNVHDN-KLSQLPAAIGE--------LEALKSLNVSHN-KLSELPEQ--IGSLISLVKLDCSSN-ELKELPDS  132 (565)
T ss_pred             cccceeEEEeccc-hhhhCCHHHHH--------HHHHHHhhcccc-hHhhccHH--Hhhhhhhhhhhcccc-ceeecCch
Confidence            5677888888774 67777776554        555666655543 23344443  334555555555442 33344444


Q ss_pred             ccCCCCeeEEEeccccccccccccCc----------cchhhhhhhhhhhccCCCccEEEecCCCCceEeccCCCCCcccC
Q 037794           83 IVSTPKLHEVQVSKKEEDELHHWEGN----------KLNSTIQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFF  152 (293)
Q Consensus        83 ~~~~~~L~~L~l~~c~~~~~~~~~~~----------~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l  152 (293)
                      ++.+..|+.+..... +..+.. .+.          -....+.++++....++.|+.++... +-++.+|.    .++.+
T Consensus       133 i~~~~~l~dl~~~~N-~i~slp-~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~-N~L~tlP~----~lg~l  205 (565)
T KOG0472|consen  133 IGRLLDLEDLDATNN-QISSLP-EDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNS-NLLETLPP----ELGGL  205 (565)
T ss_pred             HHHHhhhhhhhcccc-ccccCc-hHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccch-hhhhcCCh----hhcch
Confidence            444444444443321 000000 000          00012334444444455555555543 22333331    14455


Q ss_pred             CCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceeccC
Q 037794          153 NNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNF  232 (293)
Q Consensus       153 ~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~  232 (293)
                      .+|+-||+++.....  .|+  |.++..|++|++.. +.++-++.  +..       ..++++..|++++ .++++++  
T Consensus       206 ~~L~~LyL~~Nki~~--lPe--f~gcs~L~Elh~g~-N~i~~lpa--e~~-------~~L~~l~vLDLRd-Nklke~P--  268 (565)
T KOG0472|consen  206 ESLELLYLRRNKIRF--LPE--FPGCSLLKELHVGE-NQIEMLPA--EHL-------KHLNSLLVLDLRD-NKLKEVP--  268 (565)
T ss_pred             hhhHHHHhhhccccc--CCC--CCccHHHHHHHhcc-cHHHhhHH--HHh-------cccccceeeeccc-cccccCc--
Confidence            555555555543222  132  45555555555554 33333321  110       1125666666665 4555554  


Q ss_pred             CCccccCCCcceEeeecCCCccccccccchhhc
Q 037794          233 TGNIIEMPMLWSLTIENCPDMETFISNSVLHVT  265 (293)
Q Consensus       233 ~~~~~~l~~L~~L~i~~C~~L~~l~p~~l~~l~  265 (293)
                       ..+..+.+|++|++++. .++++ |.+++.++
T Consensus       269 -de~clLrsL~rLDlSNN-~is~L-p~sLgnlh  298 (565)
T KOG0472|consen  269 -DEICLLRSLERLDLSNN-DISSL-PYSLGNLH  298 (565)
T ss_pred             -hHHHHhhhhhhhcccCC-ccccC-Ccccccce
Confidence             45555666666666664 46565 65555554

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.65  E-value=4.3e-10  Score=98.49  Aligned_cols=233  Identities=16%  Similarity=0.141  Sum_probs=150.7

Q ss_pred             CcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCcccc--ccCc
Q 037794            6 SLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTF--SQGI   83 (293)
Q Consensus         6 ~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l--p~~~   83 (293)
                      .|++|.+++|.....-+....      ...+|++++|.+.+|..+++-........+++|+.|.+..|+.++..  -...
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~------~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la  212 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTF------ASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLA  212 (483)
T ss_pred             ccccccccccccCCcchhhHH------hhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHH
Confidence            478888988866655443322      22399999999999998887666555668999999999999999843  2234


Q ss_pred             cCCCCeeEEEecccccccc----ccccCccc----------hhhhhhhhhhhccCCCccEEEecCCCCceEeccCCCCCc
Q 037794           84 VSTPKLHEVQVSKKEEDEL----HHWEGNKL----------NSTIQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPV  149 (293)
Q Consensus        84 ~~~~~L~~L~l~~c~~~~~----~~~~~~~~----------~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~  149 (293)
                      ..|++|+++.+++|+....    ....|...          ......+......++.+..+++..|..+++..... + -
T Consensus       213 ~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~-i-~  290 (483)
T KOG4341|consen  213 EGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWL-I-A  290 (483)
T ss_pred             HhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHH-H-h
Confidence            6799999999999975443    11222200          01111111222345556667777777666543211 1 1


Q ss_pred             ccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCcee
Q 037794          150 SFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRF  229 (293)
Q Consensus       150 ~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~  229 (293)
                      .....|+.|..++|....+......-++.++|+.+.+.+|..+++..- .-+..       ..+.|+.+.+.+|-...+-
T Consensus       291 ~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~f-t~l~r-------n~~~Le~l~~e~~~~~~d~  362 (483)
T KOG4341|consen  291 CGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGF-TMLGR-------NCPHLERLDLEECGLITDG  362 (483)
T ss_pred             hhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhh-hhhhc-------CChhhhhhcccccceehhh
Confidence            234778888899998887753445556788999999999987665421 11111       2378888888888766553


Q ss_pred             ccCCCccccCCCcceEeeecCCCccc
Q 037794          230 CNFTGNIIEMPMLWSLTIENCPDMET  255 (293)
Q Consensus       230 ~~~~~~~~~l~~L~~L~i~~C~~L~~  255 (293)
                       ....-..+++.|+.+.++.|...+.
T Consensus       363 -tL~sls~~C~~lr~lslshce~itD  387 (483)
T KOG4341|consen  363 -TLASLSRNCPRLRVLSLSHCELITD  387 (483)
T ss_pred             -hHhhhccCCchhccCChhhhhhhhh
Confidence             1112335678888888888865543

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.56  E-value=3.2e-07  Score=82.19  Aligned_cols=54  Identities=20%  Similarity=0.346  Sum_probs=37.8

Q ss_pred             cccccceeeccccccccccccccccccCC-CcceEeEcCCCCccccccCccCCCCeeEEEeccc
Q 037794           35 AFNELKFLELDDLPRLTSFCLENYTLEFP-SLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKK   97 (293)
Q Consensus        35 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~-~L~~L~i~~c~~l~~lp~~~~~~~~L~~L~l~~c   97 (293)
                      .+++++.|++++| .++.+|.      +| +|++|.+.+|..++.+|..+  .++|+.|.+.+|
T Consensus        50 ~~~~l~~L~Is~c-~L~sLP~------LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C  104 (426)
T PRK15386         50 EARASGRLYIKDC-DIESLPV------LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC  104 (426)
T ss_pred             HhcCCCEEEeCCC-CCcccCC------CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence            4677888888877 5666662      43 68888888888877776432  357788888776

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.53  E-value=5.6e-08  Score=95.75  Aligned_cols=41  Identities=24%  Similarity=0.443  Sum_probs=26.0

Q ss_pred             CCcccEEecCCCCCCceeccCCCccccCCCcceEeeecCCCcccc
Q 037794          212 FPRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETF  256 (293)
Q Consensus       212 f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l  256 (293)
                      |+++..+.+.+|..++..    ......|+|+.|.+..|+.++.+
T Consensus       746 f~~l~~~~~~~~~~~r~l----~~~~f~~~L~~l~l~~~~~~e~~  786 (889)
T KOG4658|consen  746 FPNLSKVSILNCHMLRDL----TWLLFAPHLTSLSLVSCRLLEDI  786 (889)
T ss_pred             HHHHHHHHhhcccccccc----chhhccCcccEEEEecccccccC
Confidence            455666666666555554    22345577888888888777776

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.42  E-value=3.9e-08  Score=94.02  Aligned_cols=45  Identities=27%  Similarity=0.262  Sum_probs=32.7

Q ss_pred             cccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccc
Q 037794          149 VSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVL  196 (293)
Q Consensus       149 ~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~  196 (293)
                      +.++++|+.|.+++...-.  ||.+.+.++..|++|.+++ ++++.++
T Consensus       379 l~~~~hLKVLhLsyNrL~~--fpas~~~kle~LeeL~LSG-NkL~~Lp  423 (1081)
T KOG0618|consen  379 LVNFKHLKVLHLSYNRLNS--FPASKLRKLEELEELNLSG-NKLTTLP  423 (1081)
T ss_pred             hccccceeeeeeccccccc--CCHHHHhchHHhHHHhccc-chhhhhh
Confidence            5567888888887765333  5777788888888888888 6666665

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.38  E-value=4.4e-08  Score=86.17  Aligned_cols=228  Identities=16%  Similarity=0.054  Sum_probs=102.0

Q ss_pred             CCCcceEeccccccceEeccccccccccccccccccceeecccccccc--c-cc-cccccccCCCcceEeEcCCCCcccc
Q 037794            4 PNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLT--S-FC-LENYTLEFPSLERVFVTRCPNMKTF   79 (293)
Q Consensus         4 l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~--~-~~-~~~~~~~~~~L~~L~i~~c~~l~~l   79 (293)
                      +.+|++|++++|. ++......   ........++|+.+.++++..-.  . +. .......+++|++|++++|+.-...
T Consensus        22 l~~L~~l~l~~~~-l~~~~~~~---i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~   97 (319)
T cd00116          22 LLCLQVLRLEGNT-LGEEAAKA---LASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDG   97 (319)
T ss_pred             HhhccEEeecCCC-CcHHHHHH---HHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhH
Confidence            3457777777763 22110000   00112235667777776653210  0 00 0011234667888888777553322


Q ss_pred             ccCccCC---CCeeEEEeccccccccccccCccchhhhhhhhhhhccC-CCccEEEecCCCCceEeccCCC-CCcccCCC
Q 037794           80 SQGIVST---PKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGF-RDIERLQLSHFPRLKEIWHGQA-LPVSFFNN  154 (293)
Q Consensus        80 p~~~~~~---~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~-~~~~~l~~  154 (293)
                      +..+..+   ++|+.|.+++|.-..          .....+...+..+ ++|+.|++++|. +........ ..+...++
T Consensus        98 ~~~~~~l~~~~~L~~L~ls~~~~~~----------~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~  166 (319)
T cd00116          98 CGVLESLLRSSSLQELKLNNNGLGD----------RGLRLLAKGLKDLPPALEKLVLGRNR-LEGASCEALAKALRANRD  166 (319)
T ss_pred             HHHHHHHhccCcccEEEeeCCccch----------HHHHHHHHHHHhCCCCceEEEcCCCc-CCchHHHHHHHHHHhCCC
Confidence            2222222   448888877661000          0111222333445 777777777764 221100000 01223456


Q ss_pred             ccEEEeccCCCCCccCC--hhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceeccC
Q 037794          155 LFKLVVDDCANMSSAIP--ANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNF  232 (293)
Q Consensus       155 L~~L~i~~c~~l~~~~p--~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~  232 (293)
                      |++|++++|..-...++  ...+...++|+.|++.+|. ++.... ..+.   ... ..+++|++|+++++. +++....
T Consensus       167 L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~-~~l~---~~~-~~~~~L~~L~ls~n~-l~~~~~~  239 (319)
T cd00116         167 LKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNG-LTDEGA-SALA---ETL-ASLKSLEVLNLGDNN-LTDAGAA  239 (319)
T ss_pred             cCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCc-cChHHH-HHHH---HHh-cccCCCCEEecCCCc-CchHHHH
Confidence            77777777653322111  1123344577777777753 222110 0000   000 123677777777753 4321100


Q ss_pred             C--Ccc-ccCCCcceEeeecCCCcc
Q 037794          233 T--GNI-IEMPMLWSLTIENCPDME  254 (293)
Q Consensus       233 ~--~~~-~~l~~L~~L~i~~C~~L~  254 (293)
                      .  ..+ ...+.|++|++++| +++
T Consensus       240 ~l~~~~~~~~~~L~~L~l~~n-~i~  263 (319)
T cd00116         240 ALASALLSPNISLLTLSLSCN-DIT  263 (319)
T ss_pred             HHHHHHhccCCCceEEEccCC-CCC
Confidence            0  000 12367777777777 453

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.37  E-value=1.5e-07  Score=82.80  Aligned_cols=231  Identities=17%  Similarity=0.126  Sum_probs=129.5

Q ss_pred             CCCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccC---CCcceEeEcCCCCcc--
Q 037794            3 IPNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEF---PSLERVFVTRCPNMK--   77 (293)
Q Consensus         3 ~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~---~~L~~L~i~~c~~l~--   77 (293)
                      ..++|++++++++.. ...+.... ........+++|+.|+++++......+..  ...+   ++|++|++++|..-.  
T Consensus        49 ~~~~l~~l~l~~~~~-~~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~--~~~l~~~~~L~~L~ls~~~~~~~~  124 (319)
T cd00116          49 PQPSLKELCLSLNET-GRIPRGLQ-SLLQGLTKGCGLQELDLSDNALGPDGCGV--LESLLRSSSLQELKLNNNGLGDRG  124 (319)
T ss_pred             hCCCceEEecccccc-CCcchHHH-HHHHHHHhcCceeEEEccCCCCChhHHHH--HHHHhccCcccEEEeeCCccchHH
Confidence            456789999987633 21111100 00012223779999999988654322221  1122   569999999985331  


Q ss_pred             --ccccCccCC-CCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCCCCceEeccCCCCC--cccC
Q 037794           78 --TFSQGIVST-PKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALP--VSFF  152 (293)
Q Consensus        78 --~lp~~~~~~-~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~--~~~l  152 (293)
                        .+...+..+ ++|+.|++++|. ..     +    .....+...+..+++|+.|+++++. ++...... ++  ...+
T Consensus       125 ~~~l~~~l~~~~~~L~~L~L~~n~-l~-----~----~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~-l~~~l~~~  192 (319)
T cd00116         125 LRLLAKGLKDLPPALEKLVLGRNR-LE-----G----ASCEALAKALRANRDLKELNLANNG-IGDAGIRA-LAEGLKAN  192 (319)
T ss_pred             HHHHHHHHHhCCCCceEEEcCCCc-CC-----c----hHHHHHHHHHHhCCCcCEEECcCCC-CchHHHHH-HHHHHHhC
Confidence              222334455 899999999871 00     0    1122344445667899999999864 33211100 10  2234


Q ss_pred             CCccEEEeccCCCCCccC--ChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceec
Q 037794          153 NNLFKLVVDDCANMSSAI--PANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFC  230 (293)
Q Consensus       153 ~~L~~L~i~~c~~l~~~~--p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~  230 (293)
                      ++|++|++++|..-....  ....+..+++|+.|++++|. +++... ..+..  .... ..++|++|++.+| .+++..
T Consensus       193 ~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~-l~~~~~-~~l~~--~~~~-~~~~L~~L~l~~n-~i~~~~  266 (319)
T cd00116         193 CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN-LTDAGA-AALAS--ALLS-PNISLLTLSLSCN-DITDDG  266 (319)
T ss_pred             CCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc-CchHHH-HHHHH--HHhc-cCCCceEEEccCC-CCCcHH
Confidence            699999999986432110  11235567889999999964 433110 11000  0000 1278999999997 453211


Q ss_pred             c--CCCccccCCCcceEeeecCCCcccc
Q 037794          231 N--FTGNIIEMPMLWSLTIENCPDMETF  256 (293)
Q Consensus       231 ~--~~~~~~~l~~L~~L~i~~C~~L~~l  256 (293)
                      .  ....+..+++|++++++++ ++..-
T Consensus       267 ~~~l~~~~~~~~~L~~l~l~~N-~l~~~  293 (319)
T cd00116         267 AKDLAEVLAEKESLLELDLRGN-KFGEE  293 (319)
T ss_pred             HHHHHHHHhcCCCccEEECCCC-CCcHH
Confidence            1  1134456689999999997 46543

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.34  E-value=1.6e-08  Score=78.96  Aligned_cols=157  Identities=23%  Similarity=0.286  Sum_probs=92.6

Q ss_pred             ccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccCccCCCCeeEEEeccccccccccccCccchhhhh
Q 037794           36 FNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQ  115 (293)
Q Consensus        36 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~  115 (293)
                      +..+..|.+++.. +...+..  +..+.+|+.|++++ .+++.+|..++.+++|+.|.++-               ..+.
T Consensus        32 ~s~ITrLtLSHNK-l~~vppn--ia~l~nlevln~~n-nqie~lp~~issl~klr~lnvgm---------------nrl~   92 (264)
T KOG0617|consen   32 MSNITRLTLSHNK-LTVVPPN--IAELKNLEVLNLSN-NQIEELPTSISSLPKLRILNVGM---------------NRLN   92 (264)
T ss_pred             hhhhhhhhcccCc-eeecCCc--HHHhhhhhhhhccc-chhhhcChhhhhchhhhheecch---------------hhhh
Confidence            4455666666543 3334433  45677777777776 46777777777788888887762               2334


Q ss_pred             hhhhhhccCCCccEEEecCCCCceE-eccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccc
Q 037794          116 KRYEEMIGFRDIERLQLSHFPRLKE-IWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEE  194 (293)
Q Consensus       116 ~l~~~~~~~~~L~~L~l~~~~~l~~-~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~  194 (293)
                      .++..++++|.|+.|+++..+ +.. .-.|+   +..+..|+-|++.+...- . +|.. .+++++|+.|.+++. .+-+
T Consensus        93 ~lprgfgs~p~levldltynn-l~e~~lpgn---ff~m~tlralyl~dndfe-~-lp~d-vg~lt~lqil~lrdn-dll~  164 (264)
T KOG0617|consen   93 ILPRGFGSFPALEVLDLTYNN-LNENSLPGN---FFYMTTLRALYLGDNDFE-I-LPPD-VGKLTNLQILSLRDN-DLLS  164 (264)
T ss_pred             cCccccCCCchhhhhhccccc-cccccCCcc---hhHHHHHHHHHhcCCCcc-c-CChh-hhhhcceeEEeeccC-chhh
Confidence            455566778888888877633 332 11122   334466777777666532 2 3554 666788888887773 3334


Q ss_pred             cccccccccccccCCCCCCcccEEecCCCCCCceec
Q 037794          195 VLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFC  230 (293)
Q Consensus       195 i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~  230 (293)
                      ++.  .++.       + .+|++|+|.+ ..++-++
T Consensus       165 lpk--eig~-------l-t~lrelhiqg-nrl~vlp  189 (264)
T KOG0617|consen  165 LPK--EIGD-------L-TRLRELHIQG-NRLTVLP  189 (264)
T ss_pred             CcH--HHHH-------H-HHHHHHhccc-ceeeecC
Confidence            442  1111       3 6777777776 3555544

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.34  E-value=1.7e-06  Score=77.50  Aligned_cols=30  Identities=20%  Similarity=0.390  Sum_probs=18.3

Q ss_pred             CCcceEeeecCCCcccc--ccccchhhccCCC
Q 037794          240 PMLWSLTIENCPDMETF--ISNSVLHVTTDNK  269 (293)
Q Consensus       240 ~~L~~L~i~~C~~L~~l--~p~~l~~l~~~~~  269 (293)
                      ++|++|.|.+|..+...  +|.+++.+.....
T Consensus       156 sSLk~L~Is~c~~i~LP~~LP~SLk~L~ls~n  187 (426)
T PRK15386        156 PSLKTLSLTGCSNIILPEKLPESLQSITLHIE  187 (426)
T ss_pred             CcccEEEecCCCcccCcccccccCcEEEeccc
Confidence            56777777777655311  3677777776433

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.32  E-value=5.8e-09  Score=91.23  Aligned_cols=217  Identities=22%  Similarity=0.262  Sum_probs=141.1

Q ss_pred             CCCCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCcccccc
Q 037794            2 GIPNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQ   81 (293)
Q Consensus         2 g~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~   81 (293)
                      |.+..++.+++++. ++.++|...+.        .++|+.++.+.. ++.+++.+  ++.+-.|+.++-.+ .++..+|.
T Consensus        88 g~l~~l~~l~vs~n-~ls~lp~~i~s--------~~~l~~l~~s~n-~~~el~~~--i~~~~~l~dl~~~~-N~i~slp~  154 (565)
T KOG0472|consen   88 GELEALKSLNVSHN-KLSELPEQIGS--------LISLVKLDCSSN-ELKELPDS--IGRLLDLEDLDATN-NQISSLPE  154 (565)
T ss_pred             HHHHHHHHhhcccc-hHhhccHHHhh--------hhhhhhhhcccc-ceeecCch--HHHHhhhhhhhccc-cccccCch
Confidence            34445566666663 66666665544        667777776553 34445544  44566666666654 35556666


Q ss_pred             CccCCCCeeEEEeccccccccc----ccc---Cc-cchhhhhhhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCC
Q 037794           82 GIVSTPKLHEVQVSKKEEDELH----HWE---GN-KLNSTIQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFN  153 (293)
Q Consensus        82 ~~~~~~~L~~L~l~~c~~~~~~----~~~---~~-~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~  153 (293)
                      ++..+.+|..+.+.+.......    .|.   .. .-...++.++++++.+.+|+.|++.. +.+..+|.     +.+..
T Consensus       155 ~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~-Nki~~lPe-----f~gcs  228 (565)
T KOG0472|consen  155 DMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRR-NKIRFLPE-----FPGCS  228 (565)
T ss_pred             HHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhh-cccccCCC-----CCccH
Confidence            6666666666555543111000    000   00 01246678889999999999999987 34555542     33557


Q ss_pred             CccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceeccCC
Q 037794          154 NLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFT  233 (293)
Q Consensus       154 ~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~  233 (293)
                      .|+++++.... ++- +|......+++|..|++++ ++++++|+  ++.        .+.+|+.|++++ ..++.++   
T Consensus       229 ~L~Elh~g~N~-i~~-lpae~~~~L~~l~vLDLRd-Nklke~Pd--e~c--------lLrsL~rLDlSN-N~is~Lp---  291 (565)
T KOG0472|consen  229 LLKELHVGENQ-IEM-LPAEHLKHLNSLLVLDLRD-NKLKEVPD--EIC--------LLRSLERLDLSN-NDISSLP---  291 (565)
T ss_pred             HHHHHHhcccH-HHh-hHHHHhcccccceeeeccc-cccccCch--HHH--------HhhhhhhhcccC-CccccCC---
Confidence            78999986553 333 4888888999999999999 88999884  221        237899999988 4566655   


Q ss_pred             CccccCCCcceEeeecCCCcccc
Q 037794          234 GNIIEMPMLWSLTIENCPDMETF  256 (293)
Q Consensus       234 ~~~~~l~~L~~L~i~~C~~L~~l  256 (293)
                      ..++++ .|+.|.+.|.| |+.+
T Consensus       292 ~sLgnl-hL~~L~leGNP-lrTi  312 (565)
T KOG0472|consen  292 YSLGNL-HLKFLALEGNP-LRTI  312 (565)
T ss_pred             cccccc-eeeehhhcCCc-hHHH
Confidence            788888 99999999987 7776

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.32  E-value=1.4e-07  Score=90.24  Aligned_cols=215  Identities=16%  Similarity=0.132  Sum_probs=134.1

Q ss_pred             ccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccCccCCCCeeEEEeccccccccccccCccchhhhh
Q 037794           36 FNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQ  115 (293)
Q Consensus        36 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~  115 (293)
                      -++|+.|..++++...-..    .+.-.+|+.++|+. .++..+|.|+..+.+|+.+.+..               ..+.
T Consensus       218 g~~l~~L~a~~n~l~~~~~----~p~p~nl~~~dis~-n~l~~lp~wi~~~~nle~l~~n~---------------N~l~  277 (1081)
T KOG0618|consen  218 GPSLTALYADHNPLTTLDV----HPVPLNLQYLDISH-NNLSNLPEWIGACANLEALNANH---------------NRLV  277 (1081)
T ss_pred             CcchheeeeccCcceeecc----ccccccceeeecch-hhhhcchHHHHhcccceEecccc---------------hhHH
Confidence            3556666666665442111    12345788888876 56778888888899999998763               3456


Q ss_pred             hhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCC-CCeEEecCcccccc
Q 037794          116 KRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSN-LRWLEVRNCDSLEE  194 (293)
Q Consensus       116 ~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~-L~~L~i~~c~~l~~  194 (293)
                      .++..+....+|+.|.+..+. +++++..    ...+..|+.|++.... +.+ +|...+..... |..|+.+. ..+..
T Consensus       278 ~lp~ri~~~~~L~~l~~~~ne-l~yip~~----le~~~sL~tLdL~~N~-L~~-lp~~~l~v~~~~l~~ln~s~-n~l~~  349 (1081)
T KOG0618|consen  278 ALPLRISRITSLVSLSAAYNE-LEYIPPF----LEGLKSLRTLDLQSNN-LPS-LPDNFLAVLNASLNTLNVSS-NKLST  349 (1081)
T ss_pred             hhHHHHhhhhhHHHHHhhhhh-hhhCCCc----ccccceeeeeeehhcc-ccc-cchHHHhhhhHHHHHHhhhh-ccccc
Confidence            777777788888888887743 6666532    2346788888886554 444 36654544333 45555443 33333


Q ss_pred             cccccccc------------ccc--c-cCCCCCCcccEEecCCCCCCceeccCCCccccCCCcceEeeecCCCcccccc-
Q 037794          195 VLHLEELN------------ADK--E-HIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFIS-  258 (293)
Q Consensus       195 i~~~~~~~------------~~~--~-~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~p-  258 (293)
                      .+..++..            ..+  . ...+.|++||.|++++ ..|.+++.  ..+.++..|++|+++|. +|+.+ | 
T Consensus       350 lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsy-NrL~~fpa--s~~~kle~LeeL~LSGN-kL~~L-p~  424 (1081)
T KOG0618|consen  350 LPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSY-NRLNSFPA--SKLRKLEELEELNLSGN-KLTTL-PD  424 (1081)
T ss_pred             cccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecc-cccccCCH--HHHhchHHhHHHhcccc-hhhhh-hH
Confidence            32111100            000  0 1223468999999998 56777776  67788999999999996 89999 7 


Q ss_pred             -----ccchhhccCCCCCcccccccccccc
Q 037794          259 -----NSVLHVTTDNKEPQKLTSEENFLLA  283 (293)
Q Consensus       259 -----~~l~~l~~~~~~~~~l~~~~~~~~~  283 (293)
                           ..|+.++++.+....+.++..+|.+
T Consensus       425 tva~~~~L~tL~ahsN~l~~fPe~~~l~qL  454 (1081)
T KOG0618|consen  425 TVANLGRLHTLRAHSNQLLSFPELAQLPQL  454 (1081)
T ss_pred             HHHhhhhhHHHhhcCCceeechhhhhcCcc
Confidence                 3455555566665555555555543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.27  E-value=1.1e-08  Score=86.23  Aligned_cols=117  Identities=19%  Similarity=0.144  Sum_probs=67.1

Q ss_pred             hccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCC-ccCChhHHhccCCCCeEEecCccccccccccc
Q 037794          121 MIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMS-SAIPANLLRCLSNLRWLEVRNCDSLEEVLHLE  199 (293)
Q Consensus       121 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~-~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~  199 (293)
                      +.++..|.+|+++.|.-..++. ...+. .--++|+.|.+++|.+.- ..=.......+|+|.+|++++|..++.- -..
T Consensus       256 ~~scs~L~~LNlsWc~l~~~~V-tv~V~-hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~-~~~  332 (419)
T KOG2120|consen  256 LSSCSRLDELNLSWCFLFTEKV-TVAVA-HISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKND-CFQ  332 (419)
T ss_pred             HHhhhhHhhcCchHhhccchhh-hHHHh-hhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCch-HHH
Confidence            4567777777777765433321 11011 112678888888776432 1101224556888888888887666541 111


Q ss_pred             ccccccccCCCCCCcccEEecCCCCCCceeccCCCccccCCCcceEeeecC
Q 037794          200 ELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENC  250 (293)
Q Consensus       200 ~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C  250 (293)
                      .+        .-|+.|++|.++.|..+..-..  -.+...|+|.+|++.+|
T Consensus       333 ~~--------~kf~~L~~lSlsRCY~i~p~~~--~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  333 EF--------FKFNYLQHLSLSRCYDIIPETL--LELNSKPSLVYLDVFGC  373 (419)
T ss_pred             HH--------HhcchheeeehhhhcCCChHHe--eeeccCcceEEEEeccc
Confidence            11        1358888888888876632110  23456788888888887

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.19  E-value=1e-07  Score=80.56  Aligned_cols=164  Identities=20%  Similarity=0.145  Sum_probs=100.0

Q ss_pred             cccccceeeccccccccccccccccccCCCcceEeEcCCCCcccc--ccCccCCCCeeEEEeccccccccccccCccchh
Q 037794           35 AFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTF--SQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNS  112 (293)
Q Consensus        35 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l--p~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~  112 (293)
                      .|.+|+.|.+++..--..+...  +..=.+|++|+++.|..++..  ...+.+|+.|..|++++|....           
T Consensus       208 ~C~kLk~lSlEg~~LdD~I~~~--iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~-----------  274 (419)
T KOG2120|consen  208 QCSKLKNLSLEGLRLDDPIVNT--IAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFT-----------  274 (419)
T ss_pred             HHHhhhhccccccccCcHHHHH--HhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccc-----------
Confidence            3667777777665432333222  334568999999999988843  3345789999999999981111           


Q ss_pred             hhhhhhh-hhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCccc
Q 037794          113 TIQKRYE-EMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDS  191 (293)
Q Consensus       113 ~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~  191 (293)
                        ..+.. ...--++|..|+++||-+--.+..-+.+ ....++|.+|++++|..+++- -..++-+++.|++|.+..|+.
T Consensus       275 --~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL-~~rcp~l~~LDLSD~v~l~~~-~~~~~~kf~~L~~lSlsRCY~  350 (419)
T KOG2120|consen  275 --EKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTL-VRRCPNLVHLDLSDSVMLKND-CFQEFFKFNYLQHLSLSRCYD  350 (419)
T ss_pred             --hhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHH-HHhCCceeeeccccccccCch-HHHHHHhcchheeeehhhhcC
Confidence              11111 1123467888888887432211110000 123589999999999888753 233466789999999999987


Q ss_pred             ccccccccccccccccCCCCCCcccEEecCCCC
Q 037794          192 LEEVLHLEELNADKEHIGPLFPRLFILRLIDLP  224 (293)
Q Consensus       192 l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~  224 (293)
                      +..-.. -...        ..|.|.+|++.+|-
T Consensus       351 i~p~~~-~~l~--------s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  351 IIPETL-LELN--------SKPSLVYLDVFGCV  374 (419)
T ss_pred             CChHHe-eeec--------cCcceEEEEecccc
Confidence            622111 0111        23888999988874

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=98.15  E-value=4.1e-07  Score=84.49  Aligned_cols=41  Identities=17%  Similarity=0.139  Sum_probs=22.4

Q ss_pred             cccEEecCCCCCCceeccCCCcccc-CCCcceEeeecCCCcccc
Q 037794          214 RLFILRLIDLPKLKRFCNFTGNIIE-MPMLWSLTIENCPDMETF  256 (293)
Q Consensus       214 ~L~~L~l~~~~~l~~~~~~~~~~~~-l~~L~~L~i~~C~~L~~l  256 (293)
                      .++.|.+..|...+.-..  ..... +..+..+++.+|+.+..-
T Consensus       402 ~l~~L~l~~~~~~t~~~l--~~~~~~~~~~~~l~~~~~~~~~~~  443 (482)
T KOG1947|consen  402 SLRVLNLSDCRLVTDKGL--RCLADSCSNLKDLDLSGCRVITLK  443 (482)
T ss_pred             ccceEecccCccccccch--HHHhhhhhccccCCccCcccccch
Confidence            367777777766554322  11111 556666777777655544

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.14  E-value=1.3e-06  Score=77.42  Aligned_cols=165  Identities=15%  Similarity=0.204  Sum_probs=89.6

Q ss_pred             cCCCcceEeEcCCCCccccc--cCccCCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCCCCc
Q 037794           61 EFPSLERVFVTRCPNMKTFS--QGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRL  138 (293)
Q Consensus        61 ~~~~L~~L~i~~c~~l~~lp--~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l  138 (293)
                      ++.+|+++.+.+|+ ....+  .....|++++.|+++..            +-.....+-.-+..+|+|+.|+++. +.+
T Consensus       119 n~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~N------------L~~nw~~v~~i~eqLp~Le~LNls~-Nrl  184 (505)
T KOG3207|consen  119 NLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRN------------LFHNWFPVLKIAEQLPSLENLNLSS-NRL  184 (505)
T ss_pred             hHHhhhheeecCcc-ccccchhhhhhhCCcceeecchhh------------hHHhHHHHHHHHHhcccchhccccc-ccc
Confidence            56677777777653 22111  23456777777777743            2222233334456777888888776 334


Q ss_pred             eEeccCCCCCcccCCCccEEEeccCCCC-CccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccE
Q 037794          139 KEIWHGQALPVSFFNNLFKLVVDDCANM-SSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFI  217 (293)
Q Consensus       139 ~~~~~~~~~~~~~l~~L~~L~i~~c~~l-~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~  217 (293)
                      ...+...  --..++.|+.|.++.|..- ++  ...++..+|+|+.|.+.+...+ .+   ....      ...+..|++
T Consensus       185 ~~~~~s~--~~~~l~~lK~L~l~~CGls~k~--V~~~~~~fPsl~~L~L~~N~~~-~~---~~~~------~~i~~~L~~  250 (505)
T KOG3207|consen  185 SNFISSN--TTLLLSHLKQLVLNSCGLSWKD--VQWILLTFPSLEVLYLEANEII-LI---KATS------TKILQTLQE  250 (505)
T ss_pred             cCCcccc--chhhhhhhheEEeccCCCCHHH--HHHHHHhCCcHHHhhhhccccc-ce---ecch------hhhhhHHhh
Confidence            4433332  1235677888888877643 22  1234566777877777764321 11   1000      013356777


Q ss_pred             EecCCCCCCceeccCCCccccCCCcceEeeecCCCcccc
Q 037794          218 LRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETF  256 (293)
Q Consensus       218 L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l  256 (293)
                      |+|++- ++.++... .....+|.|+.|.++.| .+.++
T Consensus       251 LdLs~N-~li~~~~~-~~~~~l~~L~~Lnls~t-gi~si  286 (505)
T KOG3207|consen  251 LDLSNN-NLIDFDQG-YKVGTLPGLNQLNLSST-GIASI  286 (505)
T ss_pred             ccccCC-cccccccc-cccccccchhhhhcccc-Ccchh
Confidence            777763 33333321 23456777777777766 45555

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=97.97  E-value=7.9e-07  Score=77.92  Aligned_cols=78  Identities=13%  Similarity=0.183  Sum_probs=46.7

Q ss_pred             ceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccCc-cCC
Q 037794            8 VNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGI-VST   86 (293)
Q Consensus         8 ~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~-~~~   86 (293)
                      .++.++. .+++.+|...       ...+++|++|++++. +++.+... ++.++++|.+|.+.+..+++.+|.+. ..+
T Consensus        70 veirLdq-N~I~~iP~~a-------F~~l~~LRrLdLS~N-~Is~I~p~-AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL  139 (498)
T KOG4237|consen   70 VEIRLDQ-NQISSIPPGA-------FKTLHRLRRLDLSKN-NISFIAPD-AFKGLASLLSLVLYGNNKITDLPKGAFGGL  139 (498)
T ss_pred             eEEEecc-CCcccCChhh-------ccchhhhceeccccc-chhhcChH-hhhhhHhhhHHHhhcCCchhhhhhhHhhhH
Confidence            4455544 3566666543       334788888888775 45555544 24467777777777767777776543 345


Q ss_pred             CCeeEEEec
Q 037794           87 PKLHEVQVS   95 (293)
Q Consensus        87 ~~L~~L~l~   95 (293)
                      .+|+.|.+.
T Consensus       140 ~slqrLllN  148 (498)
T KOG4237|consen  140 SSLQRLLLN  148 (498)
T ss_pred             HHHHHHhcC
Confidence            555555443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=97.92  E-value=1e-05  Score=64.73  Aligned_cols=84  Identities=26%  Similarity=0.358  Sum_probs=26.7

Q ss_pred             CCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCccccccccccccccc
Q 037794          124 FRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNA  203 (293)
Q Consensus       124 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~  203 (293)
                      +.+|+.|+++++. ++.+.  +   +..+++|+.|++++.. ++++ .......+|+|++|.+++ +++.++.....+..
T Consensus        41 l~~L~~L~Ls~N~-I~~l~--~---l~~L~~L~~L~L~~N~-I~~i-~~~l~~~lp~L~~L~L~~-N~I~~l~~l~~L~~  111 (175)
T PF14580_consen   41 LDKLEVLDLSNNQ-ITKLE--G---LPGLPRLKTLDLSNNR-ISSI-SEGLDKNLPNLQELYLSN-NKISDLNELEPLSS  111 (175)
T ss_dssp             -TT--EEE-TTS---S--T--T-------TT--EEE--SS----S--CHHHHHH-TT--EEE-TT-S---SCCCCGGGGG
T ss_pred             hcCCCEEECCCCC-Ccccc--C---ccChhhhhhcccCCCC-CCcc-ccchHHhCCcCCEEECcC-CcCCChHHhHHHHc
Confidence            4455555555532 33332  1   3355677777776554 3332 333234567777777776 55555432222222


Q ss_pred             ccccCCCCCCcccEEecCCCC
Q 037794          204 DKEHIGPLFPRLFILRLIDLP  224 (293)
Q Consensus       204 ~~~~~~~~f~~L~~L~l~~~~  224 (293)
                              +|+|+.|++.+.|
T Consensus       112 --------l~~L~~L~L~~NP  124 (175)
T PF14580_consen  112 --------LPKLRVLSLEGNP  124 (175)
T ss_dssp             ---------TT--EEE-TT-G
T ss_pred             --------CCCcceeeccCCc
Confidence                    3777777777644

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.90  E-value=1.1e-06  Score=81.66  Aligned_cols=139  Identities=21%  Similarity=0.177  Sum_probs=70.1

Q ss_pred             ccccceeeccccccccccccccccccCCCcceEeEcCC-CCcccc----ccCccCCCCeeEEEeccccccccccccCccc
Q 037794           36 FNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRC-PNMKTF----SQGIVSTPKLHEVQVSKKEEDELHHWEGNKL  110 (293)
Q Consensus        36 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c-~~l~~l----p~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~  110 (293)
                      ++.|+.+.+.+|..+...........+++|+.|++.+| ......    ......+++|+.|++.+|...          
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~i----------  256 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLV----------  256 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhcc----------
Confidence            56666666666655554333223445666777766653 222111    112234566666666665110          


Q ss_pred             hhhhhhhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecC
Q 037794          111 NSTIQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRN  188 (293)
Q Consensus       111 ~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~  188 (293)
                        ....+......+++|+.|.+.+|..+++..... + ...+++|++|++++|..+.+.........+++|+.|.+..
T Consensus       257 --sd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~-i-~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~  330 (482)
T KOG1947|consen  257 --TDIGLSALASRCPNLETLSLSNCSNLTDEGLVS-I-AERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS  330 (482)
T ss_pred             --CchhHHHHHhhCCCcceEccCCCCccchhHHHH-H-HHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh
Confidence              001111122336677777776776655433222 0 1234667777777777765432333355566666655444

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.85  E-value=3.2e-05  Score=50.54  Aligned_cols=58  Identities=33%  Similarity=0.460  Sum_probs=30.0

Q ss_pred             CccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCc
Q 037794          126 DIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNC  189 (293)
Q Consensus       126 ~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c  189 (293)
                      +|+.|+++++ .+..++.+.   +..+++|++|+++++. ++.+ +...+.++++|++|++.++
T Consensus         2 ~L~~L~l~~n-~l~~i~~~~---f~~l~~L~~L~l~~N~-l~~i-~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    2 NLESLDLSNN-KLTEIPPDS---FSNLPNLETLDLSNNN-LTSI-PPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TESEEEETSS-TESEECTTT---TTTGTTESEEEETSSS-ESEE-ETTTTTTSTTESEEEETSS
T ss_pred             cCcEEECCCC-CCCccCHHH---HcCCCCCCEeEccCCc-cCcc-CHHHHcCCCCCCEEeCcCC
Confidence            4555555554 455555443   3455566666665443 3332 4444555666666665553

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.71  E-value=6.8e-05  Score=48.96  Aligned_cols=39  Identities=26%  Similarity=0.444  Sum_probs=19.0

Q ss_pred             CccEEEeccCCCCCccCChhHHhccCCCCeEEecCccccccc
Q 037794          154 NLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEV  195 (293)
Q Consensus       154 ~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i  195 (293)
                      +|++|++++| .+..+ +...++++++|++|++.+ ..++.+
T Consensus         2 ~L~~L~l~~n-~l~~i-~~~~f~~l~~L~~L~l~~-N~l~~i   40 (61)
T PF13855_consen    2 NLESLDLSNN-KLTEI-PPDSFSNLPNLETLDLSN-NNLTSI   40 (61)
T ss_dssp             TESEEEETSS-TESEE-CTTTTTTGTTESEEEETS-SSESEE
T ss_pred             cCcEEECCCC-CCCcc-CHHHHcCCCCCCEeEccC-CccCcc
Confidence            4555555555 33333 444455555555555554 334433

...

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=97.60  E-value=5.6e-05  Score=60.47  Aligned_cols=108  Identities=20%  Similarity=0.267  Sum_probs=37.5

Q ss_pred             ccCCCccEEEecCCCCceEeccCCCCCcc-cCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccc
Q 037794          122 IGFRDIERLQLSHFPRLKEIWHGQALPVS-FFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEE  200 (293)
Q Consensus       122 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~-~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~  200 (293)
                      .+...+++|++.++. ++.+-  +   .+ .+.+|+.|+++++.--+ +   ..+..++.|++|++.+ +.++++.  ++
T Consensus        16 ~n~~~~~~L~L~~n~-I~~Ie--~---L~~~l~~L~~L~Ls~N~I~~-l---~~l~~L~~L~~L~L~~-N~I~~i~--~~   82 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQ-ISTIE--N---LGATLDKLEVLDLSNNQITK-L---EGLPGLPRLKTLDLSN-NRISSIS--EG   82 (175)
T ss_dssp             -----------------------S-----TT-TT--EEE-TTS--S------TT----TT--EEE--S-S---S-C--HH
T ss_pred             ccccccccccccccc-ccccc--c---hhhhhcCCCEEECCCCCCcc-c---cCccChhhhhhcccCC-CCCCccc--cc
Confidence            344567888888743 44432  1   22 46899999999886433 2   2477799999999999 7777764  12


Q ss_pred             cccccccCCCCCCcccEEecCCCCCCceeccCCCccccCCCcceEeeecCC
Q 037794          201 LNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCP  251 (293)
Q Consensus       201 ~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~  251 (293)
                      ...       .+|+|++|.+.+ .++.++... ..+..+++|+.|++.++|
T Consensus        83 l~~-------~lp~L~~L~L~~-N~I~~l~~l-~~L~~l~~L~~L~L~~NP  124 (175)
T PF14580_consen   83 LDK-------NLPNLQELYLSN-NKISDLNEL-EPLSSLPKLRVLSLEGNP  124 (175)
T ss_dssp             HHH-------H-TT--EEE-TT-S---SCCCC-GGGGG-TT--EEE-TT-G
T ss_pred             hHH-------hCCcCCEEECcC-CcCCChHHh-HHHHcCCCcceeeccCCc
Confidence            211       259999999987 466655332 467789999999998865

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=97.43  E-value=1.2e-05  Score=70.73  Aligned_cols=62  Identities=19%  Similarity=0.098  Sum_probs=41.5

Q ss_pred             CCCCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcC
Q 037794            2 GIPNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTR   72 (293)
Q Consensus         2 g~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~   72 (293)
                      +.+++|+.|+++.. +++.|.+..-       ..+++|..|.+.+...+++++.. .+.++.+|+.|.+.-
T Consensus        88 ~~l~~LRrLdLS~N-~Is~I~p~AF-------~GL~~l~~Lvlyg~NkI~~l~k~-~F~gL~slqrLllNa  149 (498)
T KOG4237|consen   88 KTLHRLRRLDLSKN-NISFIAPDAF-------KGLASLLSLVLYGNNKITDLPKG-AFGGLSSLQRLLLNA  149 (498)
T ss_pred             cchhhhceeccccc-chhhcChHhh-------hhhHhhhHHHhhcCCchhhhhhh-HhhhHHHHHHHhcCh
Confidence            56889999999985 7887776531       22677777887776677777654 233455555555543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.40  E-value=4e-05  Score=74.12  Aligned_cols=160  Identities=17%  Similarity=0.201  Sum_probs=98.9

Q ss_pred             cccceeecccccccccccccc-------------ccccCCCcceEeEcCCCCcc-ccccCc-cCCCCeeEEEeccccccc
Q 037794           37 NELKFLELDDLPRLTSFCLEN-------------YTLEFPSLERVFVTRCPNMK-TFSQGI-VSTPKLHEVQVSKKEEDE  101 (293)
Q Consensus        37 ~~L~~L~l~~~~~l~~~~~~~-------------~~~~~~~L~~L~i~~c~~l~-~lp~~~-~~~~~L~~L~l~~c~~~~  101 (293)
                      ..|+++.+.++...+.+....             +...-.+|++|+|++-..+. .+|... ..+|+|++|.+.+-    
T Consensus        83 ~~L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~----  158 (699)
T KOG3665|consen   83 QDLESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGR----  158 (699)
T ss_pred             ccccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCc----
Confidence            348888888777666555442             11245789999998854333 444333 45899999998863    


Q ss_pred             cccccCccchhhhhhhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCC
Q 037794          102 LHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNL  181 (293)
Q Consensus       102 ~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L  181 (293)
                               .-....+.....+||+|..|+|++.+ ++.++.     ++.++||+.|.+++-.....- ....+-++++|
T Consensus       159 ---------~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl~G-----IS~LknLq~L~mrnLe~e~~~-~l~~LF~L~~L  222 (699)
T KOG3665|consen  159 ---------QFDNDDFSQLCASFPNLRSLDISGTN-ISNLSG-----ISRLKNLQVLSMRNLEFESYQ-DLIDLFNLKKL  222 (699)
T ss_pred             ---------eecchhHHHHhhccCccceeecCCCC-ccCcHH-----HhccccHHHHhccCCCCCchh-hHHHHhcccCC
Confidence                     11122344455789999999999954 665532     678899999988877655421 22235568999


Q ss_pred             CeEEecCccccccc--ccccccccccccCCCCCCcccEEecCC
Q 037794          182 RWLEVRNCDSLEEV--LHLEELNADKEHIGPLFPRLFILRLID  222 (293)
Q Consensus       182 ~~L~i~~c~~l~~i--~~~~~~~~~~~~~~~~f~~L~~L~l~~  222 (293)
                      +.|+|+.-.....-  ..    +..+.  ...+|.|+.|+.++
T Consensus       223 ~vLDIS~~~~~~~~~ii~----qYlec--~~~LpeLrfLDcSg  259 (699)
T KOG3665|consen  223 RVLDISRDKNNDDTKIIE----QYLEC--GMVLPELRFLDCSG  259 (699)
T ss_pred             CeeeccccccccchHHHH----HHHHh--cccCccccEEecCC
Confidence            99999973322111  10    00000  01348888888875

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.31  E-value=2.9e-05  Score=74.99  Aligned_cols=133  Identities=17%  Similarity=0.185  Sum_probs=61.8

Q ss_pred             cccceeeccccccccccccccccccCCCcceEeEcCCCCcc-ccccCccCCCCeeEEEeccccccccccccCccchhhhh
Q 037794           37 NELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMK-TFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQ  115 (293)
Q Consensus        37 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~-~lp~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~  115 (293)
                      .+|+.|++.+...+..-+.......||+|+.|.+.+-.... .+.....++|+|+.|+|+++               .+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T---------------nI~  186 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT---------------NIS  186 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC---------------Ccc
Confidence            45666666554333222222223356666666666532222 23333445666666666654               111


Q ss_pred             hhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCcc-CCh---hHHhccCCCCeEEecC
Q 037794          116 KRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSA-IPA---NLLRCLSNLRWLEVRN  188 (293)
Q Consensus       116 ~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~-~p~---~~~~~l~~L~~L~i~~  188 (293)
                      .+ ..+..+++|+.|.+.++.-....-.   .....+.+|+.|+|++-....+. +..   +.-..+|+|+.|+.++
T Consensus       187 nl-~GIS~LknLq~L~mrnLe~e~~~~l---~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg  259 (699)
T KOG3665|consen  187 NL-SGISRLKNLQVLSMRNLEFESYQDL---IDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG  259 (699)
T ss_pred             Cc-HHHhccccHHHHhccCCCCCchhhH---HHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence            11 2335566666666665442221000   11345666666666655444331 000   1122366677776665

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.04  E-value=0.00041  Score=59.34  Aligned_cols=179  Identities=15%  Similarity=0.194  Sum_probs=84.1

Q ss_pred             cCCCcceEeEcCCCCccccccCccCCCCeeEEEeccccccccccc-------c--CccchhhhhhhhhhhccCCCccEEE
Q 037794           61 EFPSLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKKEEDELHHW-------E--GNKLNSTIQKRYEEMIGFRDIERLQ  131 (293)
Q Consensus        61 ~~~~L~~L~i~~c~~l~~lp~~~~~~~~L~~L~l~~c~~~~~~~~-------~--~~~~~~~~~~l~~~~~~~~~L~~L~  131 (293)
                      -|.+|+.+.++.|..-. +-.....-|.|+++++...........       +  +.+.....+.+...+..+..|+.++
T Consensus       212 ~f~~l~~~~~s~~~~~~-i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelD  290 (490)
T KOG1259|consen  212 AFRNLKTLKFSALSTEN-IVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTELD  290 (490)
T ss_pred             Hhhhhheeeeeccchhh-eeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHhhhhhcc
Confidence            45677777777774211 111122346666666655422111000       0  0001112223334455666777777


Q ss_pred             ecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCccccccccccccccc--------
Q 037794          132 LSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNA--------  203 (293)
Q Consensus       132 l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~--------  203 (293)
                      +++ +.++.+-..    +.-.|.++.|.+++.....-    ..++.+++|+.|++++ +.+.++.   |.+.        
T Consensus       291 LS~-N~I~~iDES----vKL~Pkir~L~lS~N~i~~v----~nLa~L~~L~~LDLS~-N~Ls~~~---Gwh~KLGNIKtL  357 (490)
T KOG1259|consen  291 LSG-NLITQIDES----VKLAPKLRRLILSQNRIRTV----QNLAELPQLQLLDLSG-NLLAECV---GWHLKLGNIKTL  357 (490)
T ss_pred             ccc-cchhhhhhh----hhhccceeEEeccccceeee----hhhhhcccceEeeccc-chhHhhh---hhHhhhcCEeee
Confidence            766 234433311    22346666677666653331    1255566677776666 3333331   1100        


Q ss_pred             -------ccccCCCCCCcccEEecCCCCCCceeccCCCccccCCCcceEeeecCCCcccc
Q 037794          204 -------DKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETF  256 (293)
Q Consensus       204 -------~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l  256 (293)
                             .+-+..+-+.+|..|++.+ ++++.+..- .+++++|.|+.+.+.+.| |..+
T Consensus       358 ~La~N~iE~LSGL~KLYSLvnLDl~~-N~Ie~ldeV-~~IG~LPCLE~l~L~~NP-l~~~  414 (490)
T KOG1259|consen  358 KLAQNKIETLSGLRKLYSLVNLDLSS-NQIEELDEV-NHIGNLPCLETLRLTGNP-LAGS  414 (490)
T ss_pred             ehhhhhHhhhhhhHhhhhheeccccc-cchhhHHHh-cccccccHHHHHhhcCCC-cccc
Confidence                   0000001125666666665 233332111 467788888888888876 5555

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=96.97  E-value=7.1e-05  Score=64.87  Aligned_cols=90  Identities=18%  Similarity=0.135  Sum_probs=48.5

Q ss_pred             CCCcceEeccccccceEeccccccccccccccccccceeecccccc--cc-ccccc-----cccccCCCcceEeEcCCCC
Q 037794            4 PNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPR--LT-SFCLE-----NYTLEFPSLERVFVTRCPN   75 (293)
Q Consensus         4 l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~--l~-~~~~~-----~~~~~~~~L~~L~i~~c~~   75 (293)
                      +..++++++++.+.-++.....    +.....-++|+.-+++++-.  ++ +++..     .....+|+|+.|++++...
T Consensus        29 ~~s~~~l~lsgnt~G~EAa~~i----~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~  104 (382)
T KOG1909|consen   29 MDSLTKLDLSGNTFGTEAARAI----AKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF  104 (382)
T ss_pred             cCceEEEeccCCchhHHHHHHH----HHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence            4566777777754333222211    11223355677777766521  11 11111     1234677888888888532


Q ss_pred             cc----ccccCccCCCCeeEEEeccc
Q 037794           76 MK----TFSQGIVSTPKLHEVQVSKK   97 (293)
Q Consensus        76 l~----~lp~~~~~~~~L~~L~l~~c   97 (293)
                      =.    .+-..++++..|+.|.+.+|
T Consensus       105 G~~g~~~l~~ll~s~~~L~eL~L~N~  130 (382)
T KOG1909|consen  105 GPKGIRGLEELLSSCTDLEELYLNNC  130 (382)
T ss_pred             CccchHHHHHHHHhccCHHHHhhhcC
Confidence            21    23334567888888888887

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=96.91  E-value=0.0012  Score=60.12  Aligned_cols=172  Identities=17%  Similarity=0.257  Sum_probs=92.4

Q ss_pred             ccccceeeccccccccccccccccccC-CCcceEeEcCCCCccccccCccCCCCeeEEEeccccccccccccCccchhhh
Q 037794           36 FNELKFLELDDLPRLTSFCLENYTLEF-PSLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTI  114 (293)
Q Consensus        36 ~~~L~~L~l~~~~~l~~~~~~~~~~~~-~~L~~L~i~~c~~l~~lp~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~  114 (293)
                      ++.+..|.+.+. .+.+++..  ...+ ++|+.|++++ ..+..+|..+..+++|+.|.++.+               .+
T Consensus       115 ~~~l~~L~l~~n-~i~~i~~~--~~~~~~nL~~L~l~~-N~i~~l~~~~~~l~~L~~L~l~~N---------------~l  175 (394)
T COG4886         115 LTNLTSLDLDNN-NITDIPPL--IGLLKSNLKELDLSD-NKIESLPSPLRNLPNLKNLDLSFN---------------DL  175 (394)
T ss_pred             ccceeEEecCCc-ccccCccc--cccchhhcccccccc-cchhhhhhhhhccccccccccCCc---------------hh
Confidence            344555555443 23334332  1233 2677777765 456666555667777777777654               33


Q ss_pred             hhhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccc
Q 037794          115 QKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEE  194 (293)
Q Consensus       115 ~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~  194 (293)
                      ..++......++|+.|.+++ ..+..++..    +.....|+++.+.+......  +. .+..+.++..+.+.+ ..+..
T Consensus       176 ~~l~~~~~~~~~L~~L~ls~-N~i~~l~~~----~~~~~~L~~l~~~~N~~~~~--~~-~~~~~~~l~~l~l~~-n~~~~  246 (394)
T COG4886         176 SDLPKLLSNLSNLNNLDLSG-NKISDLPPE----IELLSALEELDLSNNSIIEL--LS-SLSNLKNLSGLELSN-NKLED  246 (394)
T ss_pred             hhhhhhhhhhhhhhheeccC-CccccCchh----hhhhhhhhhhhhcCCcceec--ch-hhhhcccccccccCC-ceeee
Confidence            34444433566777777776 334444421    11223477777766643332  21 244455665555433 33332


Q ss_pred             cccccccccccccCCCCCCcccEEecCCCCCCceeccCCCccccCCCcceEeeecC
Q 037794          195 VLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENC  250 (293)
Q Consensus       195 i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C  250 (293)
                      ++  ...        ...+.+++|++.+ ..+++++    .+..+.+++.|++++-
T Consensus       247 ~~--~~~--------~~l~~l~~L~~s~-n~i~~i~----~~~~~~~l~~L~~s~n  287 (394)
T COG4886         247 LP--ESI--------GNLSNLETLDLSN-NQISSIS----SLGSLTNLRELDLSGN  287 (394)
T ss_pred             cc--chh--------ccccccceecccc-ccccccc----cccccCccCEEeccCc
Confidence            21  111        1226788888877 3566663    3667788888888874

>PLN03150 hypothetical protein; Provisional

Probab=96.91  E-value=0.0019  Score=62.30  Aligned_cols=69  Identities=20%  Similarity=0.170  Sum_probs=40.3

Q ss_pred             hhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcc
Q 037794          116 KRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCD  190 (293)
Q Consensus       116 ~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~  190 (293)
                      .++..+..+++|+.|+++++.-...++.    .+..+++|+.|+++++..... +|.. +..+++|+.|++.++.
T Consensus       433 ~ip~~i~~L~~L~~L~Ls~N~l~g~iP~----~~~~l~~L~~LdLs~N~lsg~-iP~~-l~~L~~L~~L~Ls~N~  501 (623)
T PLN03150        433 FIPNDISKLRHLQSINLSGNSIRGNIPP----SLGSITSLEVLDLSYNSFNGS-IPES-LGQLTSLRILNLNGNS  501 (623)
T ss_pred             cCCHHHhCCCCCCEEECCCCcccCcCCh----HHhCCCCCCEEECCCCCCCCC-CchH-HhcCCCCCEEECcCCc
Confidence            3444556677777777776432222221    144567777777777654443 2543 6667777777777754

>PLN03150 hypothetical protein; Provisional

Probab=96.69  E-value=0.0026  Score=61.38  Aligned_cols=111  Identities=13%  Similarity=0.007  Sum_probs=72.0

Q ss_pred             ccceeeccccccccccccccccccCCCcceEeEcCCCCccccccCccCCCCeeEEEeccccccccccccCccchhhhhhh
Q 037794           38 ELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKR  117 (293)
Q Consensus        38 ~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l  117 (293)
                      .++.|++.++..-..++..  ...+++|+.|+++++.....+|..+..+++|+.|+++++              ...+.+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~--i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N--------------~lsg~i  482 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPND--ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYN--------------SFNGSI  482 (623)
T ss_pred             EEEEEECCCCCccccCCHH--HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCC--------------CCCCCC
Confidence            3677777776433334433  557889999999887554577777888899999998865              333445


Q ss_pred             hhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCC
Q 037794          118 YEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMS  167 (293)
Q Consensus       118 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~  167 (293)
                      +..+..+++|+.|+++++.--..++..  + ...+.++..+.+.++..+.
T Consensus       483 P~~l~~L~~L~~L~Ls~N~l~g~iP~~--l-~~~~~~~~~l~~~~N~~lc  529 (623)
T PLN03150        483 PESLGQLTSLRILNLNGNSLSGRVPAA--L-GGRLLHRASFNFTDNAGLC  529 (623)
T ss_pred             chHHhcCCCCCEEECcCCcccccCChH--H-hhccccCceEEecCCcccc
Confidence            666778889999999886533333321  0 1112456677777665444

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=96.55  E-value=0.002  Score=58.55  Aligned_cols=170  Identities=21%  Similarity=0.301  Sum_probs=97.1

Q ss_pred             CCcceEeccccccceEecccccccccccccccc-ccceeeccccccccccccccccccCCCcceEeEcCCCCccccccCc
Q 037794            5 NSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFN-ELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGI   83 (293)
Q Consensus         5 ~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~-~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~   83 (293)
                      +.++.|.+.+. .+..++...+        .+. +|+.|++++. .+..++..  ...+++|+.|.+.++ .+..+|...
T Consensus       116 ~~l~~L~l~~n-~i~~i~~~~~--------~~~~nL~~L~l~~N-~i~~l~~~--~~~l~~L~~L~l~~N-~l~~l~~~~  182 (394)
T COG4886         116 TNLTSLDLDNN-NITDIPPLIG--------LLKSNLKELDLSDN-KIESLPSP--LRNLPNLKNLDLSFN-DLSDLPKLL  182 (394)
T ss_pred             cceeEEecCCc-ccccCccccc--------cchhhccccccccc-chhhhhhh--hhccccccccccCCc-hhhhhhhhh
Confidence            45666666553 5555554332        253 8999998775 34555321  447899999999986 567676655


Q ss_pred             cCCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccC
Q 037794           84 VSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDC  163 (293)
Q Consensus        84 ~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c  163 (293)
                      ...++|+.|.+++.               .+..++..+.....|+++.+.+...+..+     ..+..+.++..+.+.+.
T Consensus       183 ~~~~~L~~L~ls~N---------------~i~~l~~~~~~~~~L~~l~~~~N~~~~~~-----~~~~~~~~l~~l~l~~n  242 (394)
T COG4886         183 SNLSNLNNLDLSGN---------------KISDLPPEIELLSALEELDLSNNSIIELL-----SSLSNLKNLSGLELSNN  242 (394)
T ss_pred             hhhhhhhheeccCC---------------ccccCchhhhhhhhhhhhhhcCCcceecc-----hhhhhcccccccccCCc
Confidence            57888999988864               33444444334455777777764322211     11334455555554333


Q ss_pred             CCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCC
Q 037794          164 ANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLID  222 (293)
Q Consensus       164 ~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~  222 (293)
                      . +.+. + .....++++++|++.+ ..++++..   ..        .+.+++.|++.+
T Consensus       243 ~-~~~~-~-~~~~~l~~l~~L~~s~-n~i~~i~~---~~--------~~~~l~~L~~s~  286 (394)
T COG4886         243 K-LEDL-P-ESIGNLSNLETLDLSN-NQISSISS---LG--------SLTNLRELDLSG  286 (394)
T ss_pred             e-eeec-c-chhccccccceecccc-cccccccc---cc--------ccCccCEEeccC
Confidence            2 2221 2 2356667777777776 44555432   11        125666666665

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=96.55  E-value=0.00075  Score=57.76  Aligned_cols=110  Identities=17%  Similarity=0.253  Sum_probs=73.3

Q ss_pred             CCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceeccC
Q 037794          153 NNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNF  232 (293)
Q Consensus       153 ~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~  232 (293)
                      .-|+++++++.. .+. |.++ ..-+|.++.|++++ +.+..+.   ..+.       + ++|..|++++ +.++.+.. 
T Consensus       284 q~LtelDLS~N~-I~~-iDES-vKL~Pkir~L~lS~-N~i~~v~---nLa~-------L-~~L~~LDLS~-N~Ls~~~G-  346 (490)
T KOG1259|consen  284 QELTELDLSGNL-ITQ-IDES-VKLAPKLRRLILSQ-NRIRTVQ---NLAE-------L-PQLQLLDLSG-NLLAECVG-  346 (490)
T ss_pred             hhhhhccccccc-hhh-hhhh-hhhccceeEEeccc-cceeeeh---hhhh-------c-ccceEeeccc-chhHhhhh-
Confidence            668899998764 332 3444 56689999999998 6665553   2222       4 9999999998 45666532 


Q ss_pred             CCccccCCCcceEeeecCCCccccccccchhhcc---------CCCCCccccccccccccc
Q 037794          233 TGNIIEMPMLWSLTIENCPDMETFISNSVLHVTT---------DNKEPQKLTSEENFLLAH  284 (293)
Q Consensus       233 ~~~~~~l~~L~~L~i~~C~~L~~l~p~~l~~l~~---------~~~~~~~l~~~~~~~~~~  284 (293)
                        .-..+.+.++|.+++. .++++  ++++++.+         ++.+.+.+..+.++|=+.
T Consensus       347 --wh~KLGNIKtL~La~N-~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE  402 (490)
T KOG1259|consen  347 --WHLKLGNIKTLKLAQN-KIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLE  402 (490)
T ss_pred             --hHhhhcCEeeeehhhh-hHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHH
Confidence              2356788999999885 67776  46666665         344455555666666433

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=96.48  E-value=0.004  Score=37.63  Aligned_cols=39  Identities=18%  Similarity=0.244  Sum_probs=25.0

Q ss_pred             CcccEEecCCCCCCceeccCCCccccCCCcceEeeecCCCcccc
Q 037794          213 PRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETF  256 (293)
Q Consensus       213 ~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l  256 (293)
                      ++|++|++.+. ++++++   ..+..+++|+.|+++++ +++++
T Consensus         1 ~~L~~L~l~~N-~i~~l~---~~l~~l~~L~~L~l~~N-~i~~i   39 (44)
T PF12799_consen    1 KNLEELDLSNN-QITDLP---PELSNLPNLETLNLSNN-PISDI   39 (44)
T ss_dssp             TT-SEEEETSS-S-SSHG---GHGTTCTTSSEEEETSS-CCSBE
T ss_pred             CcceEEEccCC-CCcccC---chHhCCCCCCEEEecCC-CCCCC
Confidence            46777777774 566663   33677777777777777 46665

...

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=96.36  E-value=0.00017  Score=66.50  Aligned_cols=157  Identities=22%  Similarity=0.254  Sum_probs=100.7

Q ss_pred             cCCCcceEeEcCCCCccccccCccCCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCCCCceE
Q 037794           61 EFPSLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRLKE  140 (293)
Q Consensus        61 ~~~~L~~L~i~~c~~l~~lp~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~  140 (293)
                      .|..|+.+.+.. +.+..+|..+.++..|..++++..               .+..++..+. .-=|+.|.+++ ++++.
T Consensus        96 ~f~~Le~liLy~-n~~r~ip~~i~~L~~lt~l~ls~N---------------qlS~lp~~lC-~lpLkvli~sN-Nkl~~  157 (722)
T KOG0532|consen   96 AFVSLESLILYH-NCIRTIPEAICNLEALTFLDLSSN---------------QLSHLPDGLC-DLPLKVLIVSN-NKLTS  157 (722)
T ss_pred             HHHHHHHHHHHh-ccceecchhhhhhhHHHHhhhccc---------------hhhcCChhhh-cCcceeEEEec-Ccccc
Confidence            344444444432 234455666666677777766531               2223333322 33467777777 55676


Q ss_pred             eccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEec
Q 037794          141 IWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRL  220 (293)
Q Consensus       141 ~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l  220 (293)
                      ++    .+++..+.|..|+.++|.... + |.. +.++.+|+.|.++. +.+..++....  .         -.|..|++
T Consensus       158 lp----~~ig~~~tl~~ld~s~nei~s-l-psq-l~~l~slr~l~vrR-n~l~~lp~El~--~---------LpLi~lDf  218 (722)
T KOG0532|consen  158 LP----EEIGLLPTLAHLDVSKNEIQS-L-PSQ-LGYLTSLRDLNVRR-NHLEDLPEELC--S---------LPLIRLDF  218 (722)
T ss_pred             CC----cccccchhHHHhhhhhhhhhh-c-hHH-hhhHHHHHHHHHhh-hhhhhCCHHHh--C---------Cceeeeec
Confidence            66    335667889999998776544 2 554 77788999999888 66666663211  1         35778888


Q ss_pred             CCCCCCceeccCCCccccCCCcceEeeecCCCcccccccc
Q 037794          221 IDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNS  260 (293)
Q Consensus       221 ~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~p~~  260 (293)
                      + |+++..++   -.+..|..|++|.+.+.| |++- |..
T Consensus       219 S-cNkis~iP---v~fr~m~~Lq~l~LenNP-LqSP-PAq  252 (722)
T KOG0532|consen  219 S-CNKISYLP---VDFRKMRHLQVLQLENNP-LQSP-PAQ  252 (722)
T ss_pred             c-cCceeecc---hhhhhhhhheeeeeccCC-CCCC-hHH
Confidence            6 57888876   577889999999999876 8887 643

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.32  E-value=0.00065  Score=54.78  Aligned_cols=72  Identities=25%  Similarity=0.385  Sum_probs=44.7

Q ss_pred             HhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceeccCCCccccCCCcceEeeecCCCcc
Q 037794          175 LRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDME  254 (293)
Q Consensus       175 ~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~~L~  254 (293)
                      +..++.++.|.+.+|..+.+-. .+.+..       .+|+|+.|+|++|+.+++-..  ..+..+++|+.|.+++.|...
T Consensus       121 L~~l~~i~~l~l~~ck~~dD~~-L~~l~~-------~~~~L~~L~lsgC~rIT~~GL--~~L~~lknLr~L~l~~l~~v~  190 (221)
T KOG3864|consen  121 LRDLRSIKSLSLANCKYFDDWC-LERLGG-------LAPSLQDLDLSGCPRITDGGL--ACLLKLKNLRRLHLYDLPYVA  190 (221)
T ss_pred             HhccchhhhheeccccchhhHH-HHHhcc-------cccchheeeccCCCeechhHH--HHHHHhhhhHHHHhcCchhhh
Confidence            4556666777777777665432 122222       447788888888887777543  456677777777777765444


Q ss_pred             cc
Q 037794          255 TF  256 (293)
Q Consensus       255 ~l  256 (293)
                      .+
T Consensus       191 ~~  192 (221)
T KOG3864|consen  191 NL  192 (221)
T ss_pred             ch
Confidence            43

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=95.91  E-value=0.0016  Score=60.25  Aligned_cols=125  Identities=22%  Similarity=0.355  Sum_probs=72.2

Q ss_pred             ccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccCccCCCCeeEEEeccccccccccccCccchhhhh
Q 037794           36 FNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQ  115 (293)
Q Consensus        36 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~  115 (293)
                      +..|..++|+.. .+..++..  ++.+| |+.|-+++ ++++.+|..+...+.|..|+.+.|               .+.
T Consensus       120 L~~lt~l~ls~N-qlS~lp~~--lC~lp-Lkvli~sN-Nkl~~lp~~ig~~~tl~~ld~s~n---------------ei~  179 (722)
T KOG0532|consen  120 LEALTFLDLSSN-QLSHLPDG--LCDLP-LKVLIVSN-NKLTSLPEEIGLLPTLAHLDVSKN---------------EIQ  179 (722)
T ss_pred             hhHHHHhhhccc-hhhcCChh--hhcCc-ceeEEEec-CccccCCcccccchhHHHhhhhhh---------------hhh
Confidence            555555665443 23334443  22333 77777776 678888888888888888888866               344


Q ss_pred             hhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCc
Q 037794          116 KRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNC  189 (293)
Q Consensus       116 ~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c  189 (293)
                      .++..+..+.+|+.|.+.. +++.+++..-    .. -.|.+|+++ |.++..+ |.. +..|..|+.|.+.+.
T Consensus       180 slpsql~~l~slr~l~vrR-n~l~~lp~El----~~-LpLi~lDfS-cNkis~i-Pv~-fr~m~~Lq~l~LenN  244 (722)
T KOG0532|consen  180 SLPSQLGYLTSLRDLNVRR-NHLEDLPEEL----CS-LPLIRLDFS-CNKISYL-PVD-FRKMRHLQVLQLENN  244 (722)
T ss_pred             hchHHhhhHHHHHHHHHhh-hhhhhCCHHH----hC-Cceeeeecc-cCceeec-chh-hhhhhhheeeeeccC
Confidence            5555556666666666655 2344433221    11 235556663 4455543 554 566666666666653

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=95.74  E-value=0.013  Score=35.29  Aligned_cols=33  Identities=15%  Similarity=0.354  Sum_probs=16.7

Q ss_pred             CcceEeEcCCCCccccccCccCCCCeeEEEeccc
Q 037794           64 SLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKK   97 (293)
Q Consensus        64 ~L~~L~i~~c~~l~~lp~~~~~~~~L~~L~l~~c   97 (293)
                      +|++|+++++ +++.+|..++++++|+.|+++++
T Consensus         2 ~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N   34 (44)
T PF12799_consen    2 NLEELDLSNN-QITDLPPELSNLPNLETLNLSNN   34 (44)
T ss_dssp             T-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSS
T ss_pred             cceEEEccCC-CCcccCchHhCCCCCCEEEecCC
Confidence            4555555553 44455444455555555555544

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.71  E-value=0.0013  Score=53.09  Aligned_cols=60  Identities=20%  Similarity=0.379  Sum_probs=38.8

Q ss_pred             ccccceeeccccccccccccccccccCCCcceEeEcCCCCccccc-cCccCCCCeeEEEec
Q 037794           36 FNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFS-QGIVSTPKLHEVQVS   95 (293)
Q Consensus        36 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp-~~~~~~~~L~~L~l~   95 (293)
                      ++.++.|.+.+|..+.+|+.+....-.++|+.|+|++|+.++... ..+..+++|+.|.+.
T Consensus       124 l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~  184 (221)
T KOG3864|consen  124 LRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLY  184 (221)
T ss_pred             cchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhc
Confidence            566677777777777777766555566777777777777777321 233445666666554

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.49  E-value=0.0083  Score=30.30  Aligned_cols=22  Identities=14%  Similarity=0.200  Sum_probs=16.7

Q ss_pred             CcceEeeecCCCccccccccchhh
Q 037794          241 MLWSLTIENCPDMETFISNSVLHV  264 (293)
Q Consensus       241 ~L~~L~i~~C~~L~~l~p~~l~~l  264 (293)
                      +|++|++++| +++.+ |++++.+
T Consensus         1 ~L~~Ldls~n-~l~~i-p~~~~~l   22 (22)
T PF00560_consen    1 NLEYLDLSGN-NLTSI-PSSFSNL   22 (22)
T ss_dssp             TESEEEETSS-EESEE-GTTTTT-
T ss_pred             CccEEECCCC-cCEeC-ChhhcCC
Confidence            5788889988 78887 8877653

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.12  E-value=0.011  Score=50.78  Aligned_cols=68  Identities=19%  Similarity=0.132  Sum_probs=31.1

Q ss_pred             hhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecC
Q 037794          116 KRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRN  188 (293)
Q Consensus       116 ~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~  188 (293)
                      .+...+..+|.|+.|+++..+ +...- +. .| ....+|+.|.+.+-..--.. ..+.+..+|.+++|+++.
T Consensus        88 eI~~ile~lP~l~~LNls~N~-L~s~I-~~-lp-~p~~nl~~lVLNgT~L~w~~-~~s~l~~lP~vtelHmS~  155 (418)
T KOG2982|consen   88 EIGAILEQLPALTTLNLSCNS-LSSDI-KS-LP-LPLKNLRVLVLNGTGLSWTQ-STSSLDDLPKVTELHMSD  155 (418)
T ss_pred             HHHHHHhcCccceEeeccCCc-CCCcc-cc-Cc-ccccceEEEEEcCCCCChhh-hhhhhhcchhhhhhhhcc
Confidence            333444566666666665432 22111 11 22 22356666666543311110 223355566666666665

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=94.69  E-value=0.27  Score=36.64  Aligned_cols=55  Identities=15%  Similarity=0.196  Sum_probs=19.6

Q ss_pred             CCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEec
Q 037794          125 RDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVR  187 (293)
Q Consensus       125 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~  187 (293)
                      .+|+.+.+.+  .+..+....   +....+|+.+.+.+.  +..+ ...++.++++|+.+.+.
T Consensus        12 ~~l~~i~~~~--~~~~I~~~~---F~~~~~l~~i~~~~~--~~~i-~~~~F~~~~~l~~i~~~   66 (129)
T PF13306_consen   12 SNLESITFPN--TIKKIGENA---FSNCTSLKSINFPNN--LTSI-GDNAFSNCKSLESITFP   66 (129)
T ss_dssp             TT--EEEETS--T--EE-TTT---TTT-TT-SEEEESST--TSCE--TTTTTT-TT-EEEEET
T ss_pred             CCCCEEEECC--CeeEeChhh---ccccccccccccccc--cccc-ceeeeeccccccccccc
Confidence            3444444442  234444333   333345555555431  3332 33345555555555554

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=94.40  E-value=0.0082  Score=52.41  Aligned_cols=228  Identities=18%  Similarity=0.151  Sum_probs=125.3

Q ss_pred             CCCcceEeccccccceEecccccc----ccccccccccccceeeccccccccccc--cccccccCCCcceEeEcCCCCcc
Q 037794            4 PNSLVNLNVSYCEKIEEIIGHVGE----EAKENRIAFNELKFLELDDLPRLTSFC--LENYTLEFPSLERVFVTRCPNMK   77 (293)
Q Consensus         4 l~~L~~L~l~~c~~l~~i~~~~~~----~~~~~~~~~~~L~~L~l~~~~~l~~~~--~~~~~~~~~~L~~L~i~~c~~l~   77 (293)
                      .++|++.++++.  .+..+.....    ..+.....+|+|++++|+|...-....  ......++.+|++|.+.+|. +.
T Consensus        57 ~~~L~~v~~sd~--ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg  133 (382)
T KOG1909|consen   57 KKELREVNLSDM--FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG-LG  133 (382)
T ss_pred             cccceeeehHhh--hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCC-CC
Confidence            456777777753  2322222111    012344457899999999975332221  11223478999999999984 43


Q ss_pred             cc--------------ccCccCCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCCCCceEecc
Q 037794           78 TF--------------SQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRLKEIWH  143 (293)
Q Consensus        78 ~l--------------p~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~  143 (293)
                      ..              -.-....++|+.+.....          +-.+..-..+-..+...+.|+.+.+.... +..-.+
T Consensus       134 ~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN----------rlen~ga~~~A~~~~~~~~leevr~~qN~-I~~eG~  202 (382)
T KOG1909|consen  134 PEAGGRLGRALFELAVNKKAASKPKLRVFICGRN----------RLENGGATALAEAFQSHPTLEEVRLSQNG-IRPEGV  202 (382)
T ss_pred             hhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc----------ccccccHHHHHHHHHhccccceEEEeccc-ccCchh
Confidence            21              112345688888876532          00011112233344667888888887632 332211


Q ss_pred             CCC-CCcccCCCccEEEeccCCCCCcc--CChhHHhccCCCCeEEecCccccccccccccc-ccccccCCCCCCcccEEe
Q 037794          144 GQA-LPVSFFNNLFKLVVDDCANMSSA--IPANLLRCLSNLRWLEVRNCDSLEEVLHLEEL-NADKEHIGPLFPRLFILR  219 (293)
Q Consensus       144 ~~~-~~~~~l~~L~~L~i~~c~~l~~~--~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~-~~~~~~~~~~f~~L~~L~  219 (293)
                      ... ......++|+.|+++++..-..-  .....+..+++|+.|++.+|.- +.    .|. ...+.... .+|+|+.|.
T Consensus       203 ~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll-~~----~Ga~a~~~al~~-~~p~L~vl~  276 (382)
T KOG1909|consen  203 TALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLL-EN----EGAIAFVDALKE-SAPSLEVLE  276 (382)
T ss_pred             HHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccc-cc----ccHHHHHHHHhc-cCCCCceec
Confidence            000 11345689999999888755432  1122355577888899998852 11    111 10111111 358999999


Q ss_pred             cCCCCCCceecc--CCCccccCCCcceEeeecCCCc
Q 037794          220 LIDLPKLKRFCN--FTGNIIEMPMLWSLTIENCPDM  253 (293)
Q Consensus       220 l~~~~~l~~~~~--~~~~~~~l~~L~~L~i~~C~~L  253 (293)
                      +.++. ++.-..  ....+...|.|+.|++++| .+
T Consensus       277 l~gNe-It~da~~~la~~~~ek~dL~kLnLngN-~l  310 (382)
T KOG1909|consen  277 LAGNE-ITRDAALALAACMAEKPDLEKLNLNGN-RL  310 (382)
T ss_pred             cCcch-hHHHHHHHHHHHHhcchhhHHhcCCcc-cc
Confidence            98864 332110  0023455789999999998 45

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.22  E-value=0.033  Score=26.14  Aligned_cols=16  Identities=25%  Similarity=0.493  Sum_probs=9.5

Q ss_pred             CCcceEeeecCCCcccc
Q 037794          240 PMLWSLTIENCPDMETF  256 (293)
Q Consensus       240 ~~L~~L~i~~C~~L~~l  256 (293)
                      ++|+.|++++|. |+++
T Consensus         1 ~~L~~L~l~~n~-L~~l   16 (17)
T PF13504_consen    1 PNLRTLDLSNNR-LTSL   16 (17)
T ss_dssp             TT-SEEEETSS---SSE
T ss_pred             CccCEEECCCCC-CCCC
Confidence            467778888874 7766

...

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.09  E-value=0.079  Score=45.67  Aligned_cols=70  Identities=19%  Similarity=0.131  Sum_probs=35.1

Q ss_pred             ccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCccccccc
Q 037794          122 IGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEV  195 (293)
Q Consensus       122 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i  195 (293)
                      .-||++..+.+..|| ++......  ....++.+--|.+.. ..+.++-....+.++++|..|++...+-...+
T Consensus       196 r~Fpnv~sv~v~e~P-lK~~s~ek--~se~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l  265 (418)
T KOG2982|consen  196 RIFPNVNSVFVCEGP-LKTESSEK--GSEPFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPL  265 (418)
T ss_pred             hhcccchheeeecCc-ccchhhcc--cCCCCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCcccccc
Confidence            457788888887776 33322111  011223333333321 22233223345667788888877776554444

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=93.91  E-value=0.16  Score=41.38  Aligned_cols=87  Identities=24%  Similarity=0.407  Sum_probs=45.2

Q ss_pred             cCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceec
Q 037794          151 FFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFC  230 (293)
Q Consensus       151 ~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~  230 (293)
                      .+++|..|.+.+.. +.++ .......+++|+.|.+.+ +++..+.+.+....        +|+|++|.+.+-+ +++..
T Consensus        62 ~l~rL~tLll~nNr-It~I-~p~L~~~~p~l~~L~Ltn-Nsi~~l~dl~pLa~--------~p~L~~Ltll~Np-v~~k~  129 (233)
T KOG1644|consen   62 HLPRLHTLLLNNNR-ITRI-DPDLDTFLPNLKTLILTN-NSIQELGDLDPLAS--------CPKLEYLTLLGNP-VEHKK  129 (233)
T ss_pred             CccccceEEecCCc-ceee-ccchhhhccccceEEecC-cchhhhhhcchhcc--------CCccceeeecCCc-hhccc
Confidence            45666666665443 3333 333345566777777776 55555544343333        3677777766532 22221


Q ss_pred             cCC-CccccCCCcceEeeec
Q 037794          231 NFT-GNIIEMPMLWSLTIEN  249 (293)
Q Consensus       231 ~~~-~~~~~l~~L~~L~i~~  249 (293)
                      ... ..+..+|+|+.|+..+
T Consensus       130 ~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  130 NYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             CceeEEEEecCcceEeehhh
Confidence            100 2345566666666554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=93.29  E-value=0.033  Score=46.78  Aligned_cols=35  Identities=23%  Similarity=0.216  Sum_probs=15.8

Q ss_pred             CCCccEEEeccC--CCCCccCChhHHhccCCCCeEEecC
Q 037794          152 FNNLFKLVVDDC--ANMSSAIPANLLRCLSNLRWLEVRN  188 (293)
Q Consensus       152 l~~L~~L~i~~c--~~l~~~~p~~~~~~l~~L~~L~i~~  188 (293)
                      +++|++|.+++.  +....+ +. .+..+|+|+++++++
T Consensus        64 Lp~LkkL~lsdn~~~~~~~l-~v-l~e~~P~l~~l~ls~  100 (260)
T KOG2739|consen   64 LPKLKKLELSDNYRRVSGGL-EV-LAEKAPNLKVLNLSG  100 (260)
T ss_pred             cchhhhhcccCCcccccccc-ee-hhhhCCceeEEeecC
Confidence            455555555544  222221 11 133346666666555

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=92.67  E-value=0.15  Score=41.45  Aligned_cols=81  Identities=19%  Similarity=0.263  Sum_probs=55.8

Q ss_pred             CCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceeccC
Q 037794          153 NNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNF  232 (293)
Q Consensus       153 ~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~  232 (293)
                      .+...+++++....+.    ..+..++.|.+|.+.+ +.++.|.  ..+..       .+|+|..|.+.+ .++..+...
T Consensus        42 d~~d~iDLtdNdl~~l----~~lp~l~rL~tLll~n-NrIt~I~--p~L~~-------~~p~l~~L~Ltn-Nsi~~l~dl  106 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKL----DNLPHLPRLHTLLLNN-NRITRID--PDLDT-------FLPNLKTLILTN-NSIQELGDL  106 (233)
T ss_pred             cccceecccccchhhc----ccCCCccccceEEecC-Ccceeec--cchhh-------hccccceEEecC-cchhhhhhc
Confidence            4567777777764442    2367788999999998 7788875  33333       569999999988 455544332


Q ss_pred             CCccccCCCcceEeeec
Q 037794          233 TGNIIEMPMLWSLTIEN  249 (293)
Q Consensus       233 ~~~~~~l~~L~~L~i~~  249 (293)
                       ..+..+|.|++|.+-+
T Consensus       107 -~pLa~~p~L~~Ltll~  122 (233)
T KOG1644|consen  107 -DPLASCPKLEYLTLLG  122 (233)
T ss_pred             -chhccCCccceeeecC
Confidence             4677788888887654

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=92.49  E-value=1  Score=33.44  Aligned_cols=55  Identities=9%  Similarity=0.183  Sum_probs=20.5

Q ss_pred             ccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccC-ccCCCCeeEEEec
Q 037794           36 FNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQG-IVSTPKLHEVQVS   95 (293)
Q Consensus        36 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~-~~~~~~L~~L~l~   95 (293)
                      +++|+.+.+.+  .++.+... ....+++|+.+.+.+  .+..++.. +.++++|+.+.+.
T Consensus        11 ~~~l~~i~~~~--~~~~I~~~-~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~   66 (129)
T PF13306_consen   11 CSNLESITFPN--TIKKIGEN-AFSNCTSLKSINFPN--NLTSIGDNAFSNCKSLESITFP   66 (129)
T ss_dssp             -TT--EEEETS--T--EE-TT-TTTT-TT-SEEEESS--TTSCE-TTTTTT-TT-EEEEET
T ss_pred             CCCCCEEEECC--CeeEeChh-hcccccccccccccc--cccccceeeeeccccccccccc
Confidence            44566665542  23333222 122455666666654  24444322 2445556666654

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=92.21  E-value=0.082  Score=44.50  Aligned_cols=111  Identities=21%  Similarity=0.283  Sum_probs=60.2

Q ss_pred             cCCCcceEeEcCCCCcc--ccccCccCCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCCCCc
Q 037794           61 EFPSLERVFVTRCPNMK--TFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRL  138 (293)
Q Consensus        61 ~~~~L~~L~i~~c~~l~--~lp~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l  138 (293)
                      .+..|+.|.+.++...+  .+|    .+|+|+.|.++..            ...-...+..-...+|+|+.+++++ +.+
T Consensus        41 ~~~~le~ls~~n~gltt~~~~P----~Lp~LkkL~lsdn------------~~~~~~~l~vl~e~~P~l~~l~ls~-Nki  103 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTTLTNFP----KLPKLKKLELSDN------------YRRVSGGLEVLAEKAPNLKVLNLSG-NKI  103 (260)
T ss_pred             cccchhhhhhhccceeecccCC----CcchhhhhcccCC------------cccccccceehhhhCCceeEEeecC-Ccc
Confidence            45566666666653222  333    4567777766532            0001111112223457777777776 333


Q ss_pred             eEeccCCCCCcccCCCccEEEeccCCCCC--ccCChhHHhccCCCCeEEecCccc
Q 037794          139 KEIWHGQALPVSFFNNLFKLVVDDCANMS--SAIPANLLRCLSNLRWLEVRNCDS  191 (293)
Q Consensus       139 ~~~~~~~~~~~~~l~~L~~L~i~~c~~l~--~~~p~~~~~~l~~L~~L~i~~c~~  191 (293)
                      ..+  ...-|...+.+|..|.+.+|....  +. -..++.-+++|+.|+-..+..
T Consensus       104 ~~l--stl~pl~~l~nL~~Ldl~n~~~~~l~dy-re~vf~ll~~L~~LD~~dv~~  155 (260)
T KOG2739|consen  104 KDL--STLRPLKELENLKSLDLFNCSVTNLDDY-REKVFLLLPSLKYLDGCDVDG  155 (260)
T ss_pred             ccc--cccchhhhhcchhhhhcccCCccccccH-HHHHHHHhhhhccccccccCC
Confidence            332  111234567788888888887543  21 235677788888887776543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=90.42  E-value=0.034  Score=53.41  Aligned_cols=78  Identities=22%  Similarity=0.277  Sum_probs=41.6

Q ss_pred             CCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceecc
Q 037794          152 FNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCN  231 (293)
Q Consensus       152 l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~  231 (293)
                      ++.|+.|+++++...+-    ..+..++.|++|++++ +.+..++.+.-.         . -+|..|.++| +.++.+  
T Consensus       186 l~ale~LnLshNk~~~v----~~Lr~l~~LkhLDlsy-N~L~~vp~l~~~---------g-c~L~~L~lrn-N~l~tL--  247 (1096)
T KOG1859|consen  186 LPALESLNLSHNKFTKV----DNLRRLPKLKHLDLSY-NCLRHVPQLSMV---------G-CKLQLLNLRN-NALTTL--  247 (1096)
T ss_pred             HHHhhhhccchhhhhhh----HHHHhccccccccccc-chhccccccchh---------h-hhheeeeecc-cHHHhh--
Confidence            45566666666653331    2456667777777766 455555432110         1 2355555555 345554  


Q ss_pred             CCCccccCCCcceEeeec
Q 037794          232 FTGNIIEMPMLWSLTIEN  249 (293)
Q Consensus       232 ~~~~~~~l~~L~~L~i~~  249 (293)
                        -++.++.+|+.|++++
T Consensus       248 --~gie~LksL~~LDlsy  263 (1096)
T KOG1859|consen  248 --RGIENLKSLYGLDLSY  263 (1096)
T ss_pred             --hhHHhhhhhhccchhH
Confidence              4555666666666654

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=90.32  E-value=0.18  Score=26.41  Aligned_cols=18  Identities=22%  Similarity=0.497  Sum_probs=14.2

Q ss_pred             CCCcceEeeecCCCcccc
Q 037794          239 MPMLWSLTIENCPDMETF  256 (293)
Q Consensus       239 l~~L~~L~i~~C~~L~~l  256 (293)
                      +++|++|+|++|++++.-
T Consensus         1 c~~L~~L~l~~C~~itD~   18 (26)
T smart00367        1 CPNLRELDLSGCTNITDE   18 (26)
T ss_pred             CCCCCEeCCCCCCCcCHH
Confidence            478888899999888654

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.96  E-value=0.012  Score=50.00  Aligned_cols=82  Identities=26%  Similarity=0.258  Sum_probs=47.1

Q ss_pred             CCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCccccccccccccccc
Q 037794          124 FRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNA  203 (293)
Q Consensus       124 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~  203 (293)
                      +.+.+.|+..||. +.+|....     .++.|+.|.++-. .++.+   .-++.|++|++|.++. +.|.++.+..-+..
T Consensus        18 l~~vkKLNcwg~~-L~DIsic~-----kMp~lEVLsLSvN-kIssL---~pl~rCtrLkElYLRk-N~I~sldEL~YLkn   86 (388)
T KOG2123|consen   18 LENVKKLNCWGCG-LDDISICE-----KMPLLEVLSLSVN-KISSL---APLQRCTRLKELYLRK-NCIESLDELEYLKN   86 (388)
T ss_pred             HHHhhhhcccCCC-ccHHHHHH-----hcccceeEEeecc-ccccc---hhHHHHHHHHHHHHHh-cccccHHHHHHHhc
Confidence            4566677777754 55554432     3467777777543 33322   2266778888888877 44544432222222


Q ss_pred             ccccCCCCCCcccEEecCCCC
Q 037794          204 DKEHIGPLFPRLFILRLIDLP  224 (293)
Q Consensus       204 ~~~~~~~~f~~L~~L~l~~~~  224 (293)
                             + |+|++|.|..-|
T Consensus        87 -------l-psLr~LWL~ENP   99 (388)
T KOG2123|consen   87 -------L-PSLRTLWLDENP   99 (388)
T ss_pred             -------C-chhhhHhhccCC
Confidence                   4 777777776644

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=87.63  E-value=0.035  Score=53.31  Aligned_cols=109  Identities=21%  Similarity=0.263  Sum_probs=61.3

Q ss_pred             hhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCccccccccccc
Q 037794          120 EMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLE  199 (293)
Q Consensus       120 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~  199 (293)
                      .+.-++.++.|+++.. ++..+.  +   +..++.|+.|+|+++. +..+ |.-...++. |+.|.+++ +.++.+.+.+
T Consensus       182 SLqll~ale~LnLshN-k~~~v~--~---Lr~l~~LkhLDlsyN~-L~~v-p~l~~~gc~-L~~L~lrn-N~l~tL~gie  251 (1096)
T KOG1859|consen  182 SLQLLPALESLNLSHN-KFTKVD--N---LRRLPKLKHLDLSYNC-LRHV-PQLSMVGCK-LQLLNLRN-NALTTLRGIE  251 (1096)
T ss_pred             HHHHHHHhhhhccchh-hhhhhH--H---HHhcccccccccccch-hccc-cccchhhhh-heeeeecc-cHHHhhhhHH
Confidence            3455688888888873 333322  1   4466889999998664 3322 432233343 88888888 5566553322


Q ss_pred             ccccccccCCCCCCcccEEecCCCCCCceeccCCCccccCCCcceEeeecCC
Q 037794          200 ELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCP  251 (293)
Q Consensus       200 ~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~  251 (293)
                         .       + .+|+.|++++- -+...... ..+..+..|+.|.+.|.|
T Consensus       252 ---~-------L-ksL~~LDlsyN-ll~~hseL-~pLwsLs~L~~L~LeGNP  290 (1096)
T KOG1859|consen  252 ---N-------L-KSLYGLDLSYN-LLSEHSEL-EPLWSLSSLIVLWLEGNP  290 (1096)
T ss_pred             ---h-------h-hhhhccchhHh-hhhcchhh-hHHHHHHHHHHHhhcCCc
Confidence               2       3 66777777651 12221110 234555666666666654

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=85.22  E-value=0.097  Score=40.04  Aligned_cols=106  Identities=23%  Similarity=0.179  Sum_probs=62.7

Q ss_pred             CCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccc
Q 037794          125 RDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNAD  204 (293)
Q Consensus       125 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~  204 (293)
                      ..+..+++++|+ +.+++.-. ........|+..++++.. +++ ||....+.++..++|++.+ +.+.++|..  ... 
T Consensus        27 kE~h~ldLssc~-lm~i~dav-y~l~~~~el~~i~ls~N~-fk~-fp~kft~kf~t~t~lNl~~-neisdvPeE--~Aa-   98 (177)
T KOG4579|consen   27 KELHFLDLSSCQ-LMYIADAV-YMLSKGYELTKISLSDNG-FKK-FPKKFTIKFPTATTLNLAN-NEISDVPEE--LAA-   98 (177)
T ss_pred             HHhhhcccccch-hhHHHHHH-HHHhCCceEEEEecccch-hhh-CCHHHhhccchhhhhhcch-hhhhhchHH--Hhh-
Confidence            455667777775 34333211 122233667777887765 344 5887777777888888887 667777742  322 


Q ss_pred             cccCCCCCCcccEEecCCCCCCceeccCCCccccCCCcceEeeec
Q 037794          205 KEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIEN  249 (293)
Q Consensus       205 ~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~  249 (293)
                             +|.|+.|.++.-+ +...+   ..+..+.+|-.|+..+
T Consensus        99 -------m~aLr~lNl~~N~-l~~~p---~vi~~L~~l~~Lds~~  132 (177)
T KOG4579|consen   99 -------MPALRSLNLRFNP-LNAEP---RVIAPLIKLDMLDSPE  132 (177)
T ss_pred             -------hHHhhhcccccCc-cccch---HHHHHHHhHHHhcCCC
Confidence                   3888888887743 33322   3444455555555544

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=84.07  E-value=0.63  Score=42.69  Aligned_cols=104  Identities=20%  Similarity=0.232  Sum_probs=64.1

Q ss_pred             hccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccc
Q 037794          121 MIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEE  200 (293)
Q Consensus       121 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~  200 (293)
                      ...+.+|+.+.+.+ ..++.+...    ..++++|+.|++++.. +.++   ..+..++.|+.|++.+ +.+..+.... 
T Consensus        91 l~~~~~l~~l~l~~-n~i~~i~~~----l~~~~~L~~L~ls~N~-I~~i---~~l~~l~~L~~L~l~~-N~i~~~~~~~-  159 (414)
T KOG0531|consen   91 LSKLKSLEALDLYD-NKIEKIENL----LSSLVNLQVLDLSFNK-ITKL---EGLSTLTLLKELNLSG-NLISDISGLE-  159 (414)
T ss_pred             cccccceeeeeccc-cchhhcccc----hhhhhcchheeccccc-cccc---cchhhccchhhheecc-CcchhccCCc-
Confidence            46678888888877 334443310    3467888888887665 3332   1255567788888888 4455553211 


Q ss_pred             cccccccCCCCCCcccEEecCCCCCCceeccCCCc--cccCCCcceEeeecC
Q 037794          201 LNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGN--IIEMPMLWSLTIENC  250 (293)
Q Consensus       201 ~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~--~~~l~~L~~L~i~~C  250 (293)
                        .        +++|+.+++.+. .++.+    ..  +..+.+++.+.+.+.
T Consensus       160 --~--------l~~L~~l~l~~n-~i~~i----e~~~~~~~~~l~~l~l~~n  196 (414)
T KOG0531|consen  160 --S--------LKSLKLLDLSYN-RIVDI----ENDELSELISLEELDLGGN  196 (414)
T ss_pred             --c--------chhhhcccCCcc-hhhhh----hhhhhhhccchHHHhccCC
Confidence              1        377777777774 44444    23  466777777777774

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=81.98  E-value=0.84  Score=41.88  Aligned_cols=33  Identities=15%  Similarity=0.203  Sum_probs=14.0

Q ss_pred             CCCcceEeEcCCCCccccccCccCCCCeeEEEecc
Q 037794           62 FPSLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSK   96 (293)
Q Consensus        62 ~~~L~~L~i~~c~~l~~lp~~~~~~~~L~~L~l~~   96 (293)
                      ++.|+.|++.++ .+..+ .++..+++|+.+.+++
T Consensus       139 l~~L~~L~l~~N-~i~~~-~~~~~l~~L~~l~l~~  171 (414)
T KOG0531|consen  139 LTLLKELNLSGN-LISDI-SGLESLKSLKLLDLSY  171 (414)
T ss_pred             ccchhhheeccC-cchhc-cCCccchhhhcccCCc
Confidence            444555555543 23333 2223344455554443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.90  E-value=0.11  Score=44.49  Aligned_cols=82  Identities=18%  Similarity=0.270  Sum_probs=52.4

Q ss_pred             CCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceecc
Q 037794          152 FNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCN  231 (293)
Q Consensus       152 l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~  231 (293)
                      +.+.++|..|+|. +.++   ++...++.|+.|.++- ++++.+..   +.        .+.+|++|.|.. +.+.++..
T Consensus        18 l~~vkKLNcwg~~-L~DI---sic~kMp~lEVLsLSv-NkIssL~p---l~--------rCtrLkElYLRk-N~I~sldE   80 (388)
T KOG2123|consen   18 LENVKKLNCWGCG-LDDI---SICEKMPLLEVLSLSV-NKISSLAP---LQ--------RCTRLKELYLRK-NCIESLDE   80 (388)
T ss_pred             HHHhhhhcccCCC-ccHH---HHHHhcccceeEEeec-cccccchh---HH--------HHHHHHHHHHHh-cccccHHH
Confidence            5678899999996 5543   5678899999998875 45544421   11        237888888765 33444322


Q ss_pred             CCCccccCCCcceEeeecCC
Q 037794          232 FTGNIIEMPMLWSLTIENCP  251 (293)
Q Consensus       232 ~~~~~~~l~~L~~L~i~~C~  251 (293)
                      . ..+.++|+|+.|-|...|
T Consensus        81 L-~YLknlpsLr~LWL~ENP   99 (388)
T KOG2123|consen   81 L-EYLKNLPSLRTLWLDENP   99 (388)
T ss_pred             H-HHHhcCchhhhHhhccCC
Confidence            1 245677777777665544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	293
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 2e-06
 Identities = 41/237 (17%), Positives = 82/237 (34%), Gaps = 43/237 (18%)

Query: 22  IGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQ 81
           +  + E  ++    ++  K +  D L  +    L    LE     ++F      +  F  
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV--LEPAEYRKMFD----RLSVFPP 383

Query: 82  GIVSTPKLHEV--QVSKKEEDELHHWEGNKLN--STIQKRYEEM-IGFRDIERLQLSHFP 136
                  L  +      K +  +     NKL+  S ++K+ +E  I    I         
Sbjct: 384 SAHIPTILLSLIWFDVIKSDVMV---VVNKLHKYSLVEKQPKESTISIPSIYLELKVKLE 440

Query: 137 RLKEIWHGQAL-----PVSFFNNLFKLVVDD----------CANMSSAIPANLLRCL-SN 180
               + H   +     P +F ++       D            N+       L R +  +
Sbjct: 441 NEYAL-HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD 499

Query: 181 LRWLEVR------NCDSLEEVLH-LEELNADKEHI---GPLFPRLFILRLID-LPKL 226
            R+LE +        ++   +L+ L++L   K +I    P + RL +  ++D LPK+
Sbjct: 500 FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERL-VNAILDFLPKI 555

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 6e-05
 Identities = 62/404 (15%), Positives = 129/404 (31%), Gaps = 127/404 (31%)

Query: 10  LNVSYCEKIEEIIGHV--------------GEEAKENRIAFNELK--------------- 40
           LN+  C   E ++  +               + +   ++  + ++               
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246

Query: 41  FLELDDL--PR-LTSF---C--------------LENYTLEFPSLERVFVT--------- 71
            L L ++   +   +F   C              L   T    SL+   +T         
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306

Query: 72  --RCPNMKTFS---QGIVSTPKLHEVQVSKKEEDELHHWEG------NKLNSTIQKRYEE 120
             +  + +      + + + P      +++   D L  W+       +KL + I+     
Sbjct: 307 LLKYLDCRPQDLPREVLTTNP-RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV 365

Query: 121 MIGFRDIERL--QLSHFP--------RLKEIWHG--QALPVSFFNNLFK--LVVDDCANM 166
            +   +  ++  +LS FP         L  IW    ++  +   N L K  LV       
Sbjct: 366 -LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKES 424

Query: 167 SSAIPA---NLLRCLSNLRWL--EVRNCDSLEEVLHLEELNADKE------HIG------ 209
           + +IP+    L   L N   L   + +  ++ +    ++L           HIG      
Sbjct: 425 TISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI 484

Query: 210 ------PLFPRLFI-LRLIDLPKLKRF---CNFTGNIIEMPMLWSLTI------ENCPDM 253
                  LF  +F+  R ++  K++      N +G+I  +  L  L        +N P  
Sbjct: 485 EHPERMTLFRMVFLDFRFLE-QKIRHDSTAWNASGSI--LNTLQQLKFYKPYICDNDPKY 541

Query: 254 ETFISNSVLHVTTDNKEPQKLTSEE----NFLLAHQVQPLFDEK 293
           E  + N++L       E   + S+        L  + + +F+E 
Sbjct: 542 ERLV-NAILDFLP-KIEENLICSKYTDLLRIALMAEDEAIFEEA 583

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	293
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.79
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.74
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.61
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.61
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.61
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.6
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.6
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.59
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.59
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.59
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.59
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.58
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.58
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.58
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.58
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.58
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.58
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.58
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.57
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.57
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.57
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.57
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.56
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.56
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.55
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.55
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.55
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.53
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.53
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.52
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.52
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.52
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.51
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.51
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.5
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.49
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.49
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.49
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.49
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.49
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.48
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.48
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.48
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.47
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.47
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.47
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.47
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.46
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.46
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.46
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.46
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.45
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.45
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.44
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.44
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.44
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.44
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.43
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.43
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.42
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.41
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.4
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.39
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.39
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.39
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.38
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.38
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.37
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.36
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.35
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.34
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.32
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.32
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.31
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.3
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.29
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.29
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.28
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.28
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.28
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.28
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.28
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.27
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.26
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.24
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.22
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.21
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.18
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.18
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.18
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.15
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.13
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.12
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.12
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.07
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.01
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.01
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.98
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.97
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.96
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.96
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.94
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.94
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.92
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.91
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.9
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.9
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.88
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.88
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.87
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.81
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.81
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.8
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.79
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.78
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.75
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.73
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.71
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.67
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.66
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.59
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.59
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.49
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.48
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.48
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.47
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.46
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.41
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.4
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.39
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.37
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.36
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.23
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.21
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.2
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.19
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.13
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.05
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.01
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	97.99
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	97.98
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.97
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	97.7
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.69
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.68
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	97.67
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.45
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.35
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.35
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.34
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.16
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	96.09
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	94.6
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	94.59
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	93.66
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	84.28

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.79  E-value=1.4e-18  Score=152.79  Aligned_cols=223  Identities=17%  Similarity=0.222  Sum_probs=166.8

Q ss_pred             CCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccCc
Q 037794            4 PNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGI   83 (293)
Q Consensus         4 l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~   83 (293)
                      .+++++|+++++ .++.+|.....        +++|++|+++++. +..++..  ...+++|+.|+++++ .++.+|..+
T Consensus        80 ~~~l~~L~L~~n-~l~~lp~~l~~--------l~~L~~L~L~~n~-l~~lp~~--~~~l~~L~~L~Ls~n-~l~~lp~~l  146 (328)
T 4fcg_A           80 QPGRVALELRSV-PLPQFPDQAFR--------LSHLQHMTIDAAG-LMELPDT--MQQFAGLETLTLARN-PLRALPASI  146 (328)
T ss_dssp             STTCCEEEEESS-CCSSCCSCGGG--------GTTCSEEEEESSC-CCCCCSC--GGGGTTCSEEEEESC-CCCCCCGGG
T ss_pred             ccceeEEEccCC-CchhcChhhhh--------CCCCCEEECCCCC-ccchhHH--HhccCCCCEEECCCC-ccccCcHHH
Confidence            478999999986 66777764433        8999999999875 4466643  568999999999997 566888889


Q ss_pred             cCCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccC
Q 037794           84 VSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDC  163 (293)
Q Consensus        84 ~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c  163 (293)
                      ..+++|+.|++++|....... .....    ..+...+..+++|+.|+++++. ++.++.    .+..+++|++|++++|
T Consensus       147 ~~l~~L~~L~L~~n~~~~~~p-~~~~~----~~~~~~~~~l~~L~~L~L~~n~-l~~lp~----~l~~l~~L~~L~L~~N  216 (328)
T 4fcg_A          147 ASLNRLRELSIRACPELTELP-EPLAS----TDASGEHQGLVNLQSLRLEWTG-IRSLPA----SIANLQNLKSLKIRNS  216 (328)
T ss_dssp             GGCTTCCEEEEEEETTCCCCC-SCSEE----EC-CCCEEESTTCCEEEEEEEC-CCCCCG----GGGGCTTCCEEEEESS
T ss_pred             hcCcCCCEEECCCCCCccccC-hhHhh----ccchhhhccCCCCCEEECcCCC-cCcchH----hhcCCCCCCEEEccCC
Confidence            999999999999872111110 00000    0011123458999999999863 555442    1567899999999998


Q ss_pred             CCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceeccCCCccccCCCcc
Q 037794          164 ANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLW  243 (293)
Q Consensus       164 ~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~  243 (293)
                      ... . +|.. +..+++|++|++.+|.....++.  .+.        .+++|++|++.+|..+..++   ..+..+++|+
T Consensus       217 ~l~-~-l~~~-l~~l~~L~~L~Ls~n~~~~~~p~--~~~--------~l~~L~~L~L~~n~~~~~~p---~~~~~l~~L~  280 (328)
T 4fcg_A          217 PLS-A-LGPA-IHHLPKLEELDLRGCTALRNYPP--IFG--------GRAPLKRLILKDCSNLLTLP---LDIHRLTQLE  280 (328)
T ss_dssp             CCC-C-CCGG-GGGCTTCCEEECTTCTTCCBCCC--CTT--------CCCCCCEEECTTCTTCCBCC---TTGGGCTTCC
T ss_pred             CCC-c-Cchh-hccCCCCCEEECcCCcchhhhHH--Hhc--------CCCCCCEEECCCCCchhhcc---hhhhcCCCCC
Confidence            755 3 3654 78899999999999887766652  222        24999999999998887765   5688999999


Q ss_pred             eEeeecCCCccccccccchhhcc
Q 037794          244 SLTIENCPDMETFISNSVLHVTT  266 (293)
Q Consensus       244 ~L~i~~C~~L~~l~p~~l~~l~~  266 (293)
                      +|++++|+.++.+ |.+++.+..
T Consensus       281 ~L~L~~n~~~~~i-P~~l~~L~~  302 (328)
T 4fcg_A          281 KLDLRGCVNLSRL-PSLIAQLPA  302 (328)
T ss_dssp             EEECTTCTTCCCC-CGGGGGSCT
T ss_pred             EEeCCCCCchhhc-cHHHhhccC
Confidence            9999999988888 999988876

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.74  E-value=1.1e-17  Score=147.04  Aligned_cols=201  Identities=16%  Similarity=0.292  Sum_probs=159.2

Q ss_pred             CCCCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCcccccc
Q 037794            2 GIPNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQ   81 (293)
Q Consensus         2 g~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~   81 (293)
                      +.+++|++|+++++ .+..+|...+.        +++|++|+++++. +..++..  ...+++|+.|++++|..++.+|.
T Consensus       101 ~~l~~L~~L~L~~n-~l~~lp~~~~~--------l~~L~~L~Ls~n~-l~~lp~~--l~~l~~L~~L~L~~n~~~~~~p~  168 (328)
T 4fcg_A          101 FRLSHLQHMTIDAA-GLMELPDTMQQ--------FAGLETLTLARNP-LRALPAS--IASLNRLRELSIRACPELTELPE  168 (328)
T ss_dssp             GGGTTCSEEEEESS-CCCCCCSCGGG--------GTTCSEEEEESCC-CCCCCGG--GGGCTTCCEEEEEEETTCCCCCS
T ss_pred             hhCCCCCEEECCCC-CccchhHHHhc--------cCCCCEEECCCCc-cccCcHH--HhcCcCCCEEECCCCCCccccCh
Confidence            46789999999997 55577764443        9999999999974 4566554  66899999999999998888887


Q ss_pred             CccC---------CCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCCCCceEeccCCCCCcccC
Q 037794           82 GIVS---------TPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFF  152 (293)
Q Consensus        82 ~~~~---------~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l  152 (293)
                      .+..         +++|+.|+++++               .+..++..+..+++|+.|+++++. +..++.    .+..+
T Consensus       169 ~~~~~~~~~~~~~l~~L~~L~L~~n---------------~l~~lp~~l~~l~~L~~L~L~~N~-l~~l~~----~l~~l  228 (328)
T 4fcg_A          169 PLASTDASGEHQGLVNLQSLRLEWT---------------GIRSLPASIANLQNLKSLKIRNSP-LSALGP----AIHHL  228 (328)
T ss_dssp             CSEEEC-CCCEEESTTCCEEEEEEE---------------CCCCCCGGGGGCTTCCEEEEESSC-CCCCCG----GGGGC
T ss_pred             hHhhccchhhhccCCCCCEEECcCC---------------CcCcchHhhcCCCCCCEEEccCCC-CCcCch----hhccC
Confidence            6654         899999999976               222455566789999999999965 554432    15678


Q ss_pred             CCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceeccC
Q 037794          153 NNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNF  232 (293)
Q Consensus       153 ~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~  232 (293)
                      ++|++|++++|.....+ |.. +.++++|++|++.+|.....++.  .+..       + ++|++|++++|+.+..++  
T Consensus       229 ~~L~~L~Ls~n~~~~~~-p~~-~~~l~~L~~L~L~~n~~~~~~p~--~~~~-------l-~~L~~L~L~~n~~~~~iP--  294 (328)
T 4fcg_A          229 PKLEELDLRGCTALRNY-PPI-FGGRAPLKRLILKDCSNLLTLPL--DIHR-------L-TQLEKLDLRGCVNLSRLP--  294 (328)
T ss_dssp             TTCCEEECTTCTTCCBC-CCC-TTCCCCCCEEECTTCTTCCBCCT--TGGG-------C-TTCCEEECTTCTTCCCCC--
T ss_pred             CCCCEEECcCCcchhhh-HHH-hcCCCCCCEEECCCCCchhhcch--hhhc-------C-CCCCEEeCCCCCchhhcc--
Confidence            99999999999888764 654 78899999999999988777763  2222       4 999999999999888876  


Q ss_pred             CCccccCCCcceEeeec
Q 037794          233 TGNIIEMPMLWSLTIEN  249 (293)
Q Consensus       233 ~~~~~~l~~L~~L~i~~  249 (293)
                       ..+..+++|+.+.+..
T Consensus       295 -~~l~~L~~L~~l~l~~  310 (328)
T 4fcg_A          295 -SLIAQLPANCIILVPP  310 (328)
T ss_dssp             -GGGGGSCTTCEEECCG
T ss_pred             -HHHhhccCceEEeCCH
Confidence             6788999999998775

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.61  E-value=1.1e-14  Score=124.93  Aligned_cols=205  Identities=18%  Similarity=0.201  Sum_probs=139.4

Q ss_pred             CCCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCcccc-cc
Q 037794            3 IPNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTF-SQ   81 (293)
Q Consensus         3 ~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l-p~   81 (293)
                      ..++|++|+++++ .++.++...       ...+++|++|+++++. +..+... ....+++|++|+++++..++.+ |.
T Consensus        30 ~~~~l~~L~l~~n-~i~~~~~~~-------~~~~~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~l~~n~~l~~~~~~   99 (285)
T 1ozn_A           30 IPAASQRIFLHGN-RISHVPAAS-------FRACRNLTILWLHSNV-LARIDAA-AFTGLALLEQLDLSDNAQLRSVDPA   99 (285)
T ss_dssp             CCTTCSEEECTTS-CCCEECTTT-------TTTCTTCCEEECCSSC-CCEECTT-TTTTCTTCCEEECCSCTTCCCCCTT
T ss_pred             CCCCceEEEeeCC-cCCccCHHH-------cccCCCCCEEECCCCc-cceeCHh-hcCCccCCCEEeCCCCCCccccCHH
Confidence            4568888888886 566666432       1238889999998763 4444322 2457889999999988767766 55


Q ss_pred             CccCCCCeeEEEeccccccccccccCccchhhhhhh-hhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEe
Q 037794           82 GIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKR-YEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVV  160 (293)
Q Consensus        82 ~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i  160 (293)
                      .+..+++|+.|.++++.               +..+ +..+..+++|++|+++++. ++.++...   +..+++|++|++
T Consensus       100 ~~~~l~~L~~L~l~~n~---------------l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~---~~~l~~L~~L~l  160 (285)
T 1ozn_A          100 TFHGLGRLHTLHLDRCG---------------LQELGPGLFRGLAALQYLYLQDNA-LQALPDDT---FRDLGNLTHLFL  160 (285)
T ss_dssp             TTTTCTTCCEEECTTSC---------------CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTT---TTTCTTCCEEEC
T ss_pred             HhcCCcCCCEEECCCCc---------------CCEECHhHhhCCcCCCEEECCCCc-ccccCHhH---hccCCCccEEEC
Confidence            67788899999988761               1111 2234668899999998854 55444333   456788999999


Q ss_pred             ccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceeccCCCccccCC
Q 037794          161 DDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMP  240 (293)
Q Consensus       161 ~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~  240 (293)
                      +++. +..+ +...+.++++|++|++.++. ++.+.. ..+.        .+++|++|++.++ .++.++.  ..+..++
T Consensus       161 ~~n~-l~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~--------~l~~L~~L~l~~n-~l~~~~~--~~~~~l~  225 (285)
T 1ozn_A          161 HGNR-ISSV-PERAFRGLHSLDRLLLHQNR-VAHVHP-HAFR--------DLGRLMTLYLFAN-NLSALPT--EALAPLR  225 (285)
T ss_dssp             CSSC-CCEE-CTTTTTTCTTCCEEECCSSC-CCEECT-TTTT--------TCTTCCEEECCSS-CCSCCCH--HHHTTCT
T ss_pred             CCCc-cccc-CHHHhcCccccCEEECCCCc-ccccCH-hHcc--------CcccccEeeCCCC-cCCcCCH--HHcccCc
Confidence            8875 4443 55557788999999999853 444421 2222        2388999999885 5666543  4467889


Q ss_pred             CcceEeeecCC
Q 037794          241 MLWSLTIENCP  251 (293)
Q Consensus       241 ~L~~L~i~~C~  251 (293)
                      +|++|++++++
T Consensus       226 ~L~~L~l~~N~  236 (285)
T 1ozn_A          226 ALQYLRLNDNP  236 (285)
T ss_dssp             TCCEEECCSSC
T ss_pred             ccCEEeccCCC
Confidence            99999998864

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.61  E-value=1.6e-14  Score=136.58  Aligned_cols=235  Identities=17%  Similarity=0.188  Sum_probs=121.6

Q ss_pred             CCCCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCcccccc
Q 037794            2 GIPNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQ   81 (293)
Q Consensus         2 g~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~   81 (293)
                      +.+++|++|+++++ .++.+|.....        +++|++|+++++.. ...+.. ....+++|+.|++++|.....+|.
T Consensus       275 ~~l~~L~~L~l~~n-~l~~lp~~l~~--------l~~L~~L~l~~n~l-~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~  343 (606)
T 3t6q_A          275 HCFSGLQELDLTAT-HLSELPSGLVG--------LSTLKKLVLSANKF-ENLCQI-SASNFPSLTHLSIKGNTKRLELGT  343 (606)
T ss_dssp             TTCTTCSEEECTTS-CCSCCCSSCCS--------CTTCCEEECTTCCC-SBGGGG-CGGGCTTCSEEECCSCSSCCBCCS
T ss_pred             ccccCCCEEeccCC-ccCCCChhhcc--------cccCCEEECccCCc-CcCchh-hhhccCcCCEEECCCCCcccccch
Confidence            45677888888776 55566654332        67777777777642 233221 144667777777777654434443


Q ss_pred             C-ccCCCCeeEEEeccccccccc----cccCc------cc--hhhhhhhhhhhccCCCccEEEecCCCCceEeccCCCCC
Q 037794           82 G-IVSTPKLHEVQVSKKEEDELH----HWEGN------KL--NSTIQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALP  148 (293)
Q Consensus        82 ~-~~~~~~L~~L~l~~c~~~~~~----~~~~~------~~--~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~  148 (293)
                      . +..+++|+.|+++++.-....    .+.+.      ++  +......+..+..+++|+.|+++++. +......  ..
T Consensus       344 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~--~~  420 (606)
T 3t6q_A          344 GCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR-LKVKDAQ--SP  420 (606)
T ss_dssp             STTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCC-EECCTTC--CT
T ss_pred             hhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCc-CCCcccc--hh
Confidence            3 556677777777665111000    00000      00  00000111223345555555555532 2211100  01


Q ss_pred             cccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccc-cccccccccccccCCCCCCcccEEecCCCCCCc
Q 037794          149 VSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEE-VLHLEELNADKEHIGPLFPRLFILRLIDLPKLK  227 (293)
Q Consensus       149 ~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~-i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~  227 (293)
                      +..+++|++|++++|.... . +...+.++++|++|++.++.--.. ++....+.        .+++|++|+++++ .++
T Consensus       421 ~~~l~~L~~L~l~~n~l~~-~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~--------~l~~L~~L~Ls~n-~l~  489 (606)
T 3t6q_A          421 FQNLHLLKVLNLSHSLLDI-S-SEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQ--------TLGRLEILVLSFC-DLS  489 (606)
T ss_dssp             TTTCTTCCEEECTTCCCBT-T-CTTTTTTCTTCCEEECTTCBCGGGEECSSCGGG--------GCTTCCEEECTTS-CCC
T ss_pred             hhCcccCCEEECCCCccCC-c-CHHHHhCCCCCCEEECCCCCCCccccccchhhc--------cCCCccEEECCCC-ccC
Confidence            3445666666666665332 2 223355666777777766432111 11101111        2378888888886 566


Q ss_pred             eeccCCCccccCCCcceEeeecCCCccccccccchhh
Q 037794          228 RFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVLHV  264 (293)
Q Consensus       228 ~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~p~~l~~l  264 (293)
                      .+..  ..+..+++|++|++++| +++...|..++.+
T Consensus       490 ~~~~--~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l  523 (606)
T 3t6q_A          490 SIDQ--HAFTSLKMMNHVDLSHN-RLTSSSIEALSHL  523 (606)
T ss_dssp             EECT--TTTTTCTTCCEEECCSS-CCCGGGGGGGTTC
T ss_pred             ccCh--hhhccccCCCEEECCCC-ccCcCChhHhCcc
Confidence            5543  56677888888888887 5766645555544

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.61  E-value=7e-15  Score=123.05  Aligned_cols=182  Identities=14%  Similarity=0.114  Sum_probs=89.2

Q ss_pred             ccceeeccccccccccccccccccCCCcceEeEcCCCCcccccc-CccCCCCeeEEEeccccccccccccCccchhhhhh
Q 037794           38 ELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQ-GIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQK  116 (293)
Q Consensus        38 ~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~-~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~  116 (293)
                      +|+.|+++++. ++.++.. ....+++|+.|+++++..++.++. .+..+++|+.|++++|              ..+..
T Consensus        32 ~l~~L~l~~n~-l~~i~~~-~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~--------------n~l~~   95 (239)
T 2xwt_C           32 STQTLKLIETH-LRTIPSH-AFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT--------------RNLTY   95 (239)
T ss_dssp             TCCEEEEESCC-CSEECTT-TTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEE--------------TTCCE
T ss_pred             cccEEEEeCCc-ceEECHH-HccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCC--------------CCeeE
Confidence            56666665542 3333332 133456666666666544554443 3455566666666542              11111


Q ss_pred             hh-hhhccCCCccEEEecCCCCceEeccCCCCCcccCCCcc---EEEeccCCCCCccCChhHHhccCCCC-eEEecCccc
Q 037794          117 RY-EEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLF---KLVVDDCANMSSAIPANLLRCLSNLR-WLEVRNCDS  191 (293)
Q Consensus       117 l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~---~L~i~~c~~l~~~~p~~~~~~l~~L~-~L~i~~c~~  191 (293)
                      +. ..+..+++|+.|+++++. ++.++.     +..+++|+   +|+++++..++.+ +...+.++++|+ +|++.+ ..
T Consensus        96 i~~~~f~~l~~L~~L~l~~n~-l~~lp~-----~~~l~~L~~L~~L~l~~N~~l~~i-~~~~~~~l~~L~~~L~l~~-n~  167 (239)
T 2xwt_C           96 IDPDALKELPLLKFLGIFNTG-LKMFPD-----LTKVYSTDIFFILEITDNPYMTSI-PVNAFQGLCNETLTLKLYN-NG  167 (239)
T ss_dssp             ECTTSEECCTTCCEEEEEEEC-CCSCCC-----CTTCCBCCSEEEEEEESCTTCCEE-CTTTTTTTBSSEEEEECCS-CC
T ss_pred             cCHHHhCCCCCCCEEeCCCCC-Cccccc-----cccccccccccEEECCCCcchhhc-CcccccchhcceeEEEcCC-CC
Confidence            11 122345566666665532 332221     22334444   6666666444443 444455566666 666665 33


Q ss_pred             ccccccccccccccccCCCCCCcccEEecCCCCCCceeccCCCccccC-CCcceEeeecCCCcccc
Q 037794          192 LEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEM-PMLWSLTIENCPDMETF  256 (293)
Q Consensus       192 l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l-~~L~~L~i~~C~~L~~l  256 (293)
                      ++.++.  ....       . ++|++|++.++..++.++.  ..+..+ ++|++|+++++ +++.+
T Consensus       168 l~~i~~--~~~~-------~-~~L~~L~L~~n~~l~~i~~--~~~~~l~~~L~~L~l~~N-~l~~l  220 (239)
T 2xwt_C          168 FTSVQG--YAFN-------G-TKLDAVYLNKNKYLTVIDK--DAFGGVYSGPSLLDVSQT-SVTAL  220 (239)
T ss_dssp             CCEECT--TTTT-------T-CEEEEEECTTCTTCCEECT--TTTTTCSBCCSEEECTTC-CCCCC
T ss_pred             CcccCH--hhcC-------C-CCCCEEEcCCCCCcccCCH--HHhhccccCCcEEECCCC-ccccC
Confidence            444431  1001       2 4566666666545655543  344555 66666666664 46555

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.60  E-value=9e-15  Score=142.34  Aligned_cols=157  Identities=16%  Similarity=0.080  Sum_probs=100.0

Q ss_pred             CCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccCc
Q 037794            4 PNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGI   83 (293)
Q Consensus         4 l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~   83 (293)
                      +++|++|++++|.....+|.....        +++|++|+++++..-...+..  ...+++|+.|++++|.....+|..+
T Consensus       393 ~~~L~~L~L~~n~l~~~~p~~l~~--------l~~L~~L~Ls~N~l~~~~p~~--l~~l~~L~~L~L~~n~l~~~~p~~~  462 (768)
T 3rgz_A          393 KNTLQELYLQNNGFTGKIPPTLSN--------CSELVSLHLSFNYLSGTIPSS--LGSLSKLRDLKLWLNMLEGEIPQEL  462 (768)
T ss_dssp             TCCCCEEECCSSEEEEECCGGGGG--------CTTCCEEECCSSEEESCCCGG--GGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred             cCCccEEECCCCccccccCHHHhc--------CCCCCEEECcCCcccCcccHH--HhcCCCCCEEECCCCcccCcCCHHH
Confidence            678999999988555455543333        788888888887543334433  4567888888888876555677777


Q ss_pred             cCCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccC
Q 037794           84 VSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDC  163 (293)
Q Consensus        84 ~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c  163 (293)
                      ..+++|+.|++++|              ...+.++..+..+++|+.|+++++.-...++ ..   +..+++|++|++++|
T Consensus       463 ~~l~~L~~L~L~~N--------------~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p-~~---~~~l~~L~~L~L~~N  524 (768)
T 3rgz_A          463 MYVKTLETLILDFN--------------DLTGEIPSGLSNCTNLNWISLSNNRLTGEIP-KW---IGRLENLAILKLSNN  524 (768)
T ss_dssp             GGCTTCCEEECCSS--------------CCCSCCCGGGGGCTTCCEEECCSSCCCSCCC-GG---GGGCTTCCEEECCSS
T ss_pred             cCCCCceEEEecCC--------------cccCcCCHHHhcCCCCCEEEccCCccCCcCC-hH---HhcCCCCCEEECCCC
Confidence            77788888888766              1112233445667777777777755322222 11   445677777777777


Q ss_pred             CCCCccCChhHHhccCCCCeEEecCcc
Q 037794          164 ANMSSAIPANLLRCLSNLRWLEVRNCD  190 (293)
Q Consensus       164 ~~l~~~~p~~~~~~l~~L~~L~i~~c~  190 (293)
                      ..... +|.. +..+++|+.|++.+|+
T Consensus       525 ~l~~~-~p~~-l~~l~~L~~L~Ls~N~  549 (768)
T 3rgz_A          525 SFSGN-IPAE-LGDCRSLIWLDLNTNL  549 (768)
T ss_dssp             CCEEE-CCGG-GGGCTTCCEEECCSSE
T ss_pred             cccCc-CCHH-HcCCCCCCEEECCCCc
Confidence            55443 2543 6667777777777654

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.60  E-value=8.9e-15  Score=138.40  Aligned_cols=217  Identities=16%  Similarity=0.144  Sum_probs=111.3

Q ss_pred             CCCCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccc----------------------ccc
Q 037794            2 GIPNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLE----------------------NYT   59 (293)
Q Consensus         2 g~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~----------------------~~~   59 (293)
                      +.+++|++|++++|.. +.+|..  .        +++|+.|+++++......+..                      ...
T Consensus       304 ~~~~~L~~L~l~~n~l-~~lp~~--~--------l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~  372 (606)
T 3vq2_A          304 PKHFKWQSLSIIRCQL-KQFPTL--D--------LPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSD  372 (606)
T ss_dssp             CTTCCCSEEEEESCCC-SSCCCC--C--------CSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHH
T ss_pred             cccccCCEEEcccccC-cccccC--C--------CCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhh
Confidence            4567788888888744 555522  1        555555555554333222111                      112


Q ss_pred             ccCCCcceEeEcCCCCccccccCccCCCCeeEEEeccccccccccccCccchhhhhhhh-hhhccCCCccEEEecCCCCc
Q 037794           60 LEFPSLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRY-EEMIGFRDIERLQLSHFPRL  138 (293)
Q Consensus        60 ~~~~~L~~L~i~~c~~l~~lp~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~l  138 (293)
                      ..+++|+.|++++|. +..+|..+..+++|+.|.++++.              .....+ ..+..+++|+.|+++++. +
T Consensus       373 ~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~--------------l~~~~~~~~~~~l~~L~~L~l~~n~-l  436 (606)
T 3vq2_A          373 LGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHST--------------LKRVTEFSAFLSLEKLLYLDISYTN-T  436 (606)
T ss_dssp             HCCSCCCEEECCSCS-EEEECCCCTTCTTCCEEECTTSE--------------EESTTTTTTTTTCTTCCEEECTTSC-C
T ss_pred             ccCCcccEeECCCCc-cccchhhccCCCCCCeeECCCCc--------------cCCccChhhhhccccCCEEECcCCC-C
Confidence            244555555555442 34444444555555555555440              000111 233456677777776654 3


Q ss_pred             eEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEE
Q 037794          139 KEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFIL  218 (293)
Q Consensus       139 ~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L  218 (293)
                      .......   +..+++|++|++++|......+|. .+..+++|++|++.+| .++.++. ..+.        .+++|++|
T Consensus       437 ~~~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~Ls~n-~l~~~~~-~~~~--------~l~~L~~L  502 (606)
T 3vq2_A          437 KIDFDGI---FLGLTSLNTLKMAGNSFKDNTLSN-VFANTTNLTFLDLSKC-QLEQISW-GVFD--------TLHRLQLL  502 (606)
T ss_dssp             EECCTTT---TTTCTTCCEEECTTCEEGGGEECS-CCTTCTTCCEEECTTS-CCCEECT-TTTT--------TCTTCCEE
T ss_pred             Cccchhh---hcCCCCCCEEECCCCcCCCcchHH-hhccCCCCCEEECCCC-cCCccCh-hhhc--------ccccCCEE
Confidence            3322222   445566777777666543322232 3556677777777764 3333321 1111        23777777


Q ss_pred             ecCCCCCCceeccCCCccccCCCcceEeeecCCCccccccccchhh
Q 037794          219 RLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVLHV  264 (293)
Q Consensus       219 ~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~p~~l~~l  264 (293)
                      +++++ .++.+..  ..+..+++|++|++++| +++.+ |.++..+
T Consensus       503 ~Ls~N-~l~~~~~--~~~~~l~~L~~L~l~~N-~l~~~-p~~~~~l  543 (606)
T 3vq2_A          503 NMSHN-NLLFLDS--SHYNQLYSLSTLDCSFN-RIETS-KGILQHF  543 (606)
T ss_dssp             ECCSS-CCSCEEG--GGTTTCTTCCEEECTTS-CCCCE-ESCGGGS
T ss_pred             ECCCC-cCCCcCH--HHccCCCcCCEEECCCC-cCccc-CHhHhhh
Confidence            77775 4544422  45666777777777776 47766 6544433

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.59  E-value=1e-13  Score=127.52  Aligned_cols=161  Identities=19%  Similarity=0.256  Sum_probs=107.9

Q ss_pred             CCCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccC
Q 037794            3 IPNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQG   82 (293)
Q Consensus         3 ~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~   82 (293)
                      ..+++++|+++++ .++.++...       ...+++|++|+++++. +..+... ...++++|+.|+++++ .++.+|..
T Consensus        30 ~~~~l~~L~L~~n-~l~~~~~~~-------~~~l~~L~~L~L~~n~-i~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~   98 (477)
T 2id5_A           30 IPTETRLLDLGKN-RIKTLNQDE-------FASFPHLEELELNENI-VSAVEPG-AFNNLFNLRTLGLRSN-RLKLIPLG   98 (477)
T ss_dssp             CCTTCSEEECCSS-CCCEECTTT-------TTTCTTCCEEECTTSC-CCEECTT-TTTTCTTCCEEECCSS-CCCSCCTT
T ss_pred             CCCCCcEEECCCC-ccceECHhH-------ccCCCCCCEEECCCCc-cCEeChh-hhhCCccCCEEECCCC-cCCccCcc
Confidence            3467889999886 566665432       2238899999998873 4444322 2457889999999886 46666653


Q ss_pred             -ccCCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEec
Q 037794           83 -IVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVD  161 (293)
Q Consensus        83 -~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~  161 (293)
                       +..+++|+.|+++++              .........+..+++|+.|+++++. +..+....   +..+++|++|+++
T Consensus        99 ~~~~l~~L~~L~Ls~n--------------~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~---~~~l~~L~~L~l~  160 (477)
T 2id5_A           99 VFTGLSNLTKLDISEN--------------KIVILLDYMFQDLYNLKSLEVGDND-LVYISHRA---FSGLNSLEQLTLE  160 (477)
T ss_dssp             SSTTCTTCCEEECTTS--------------CCCEECTTTTTTCTTCCEEEECCTT-CCEECTTS---STTCTTCCEEEEE
T ss_pred             cccCCCCCCEEECCCC--------------ccccCChhHccccccCCEEECCCCc-cceeChhh---ccCCCCCCEEECC
Confidence             577899999999876              1111112234667888888888743 55555444   5567888888888


Q ss_pred             cCCCCCccCChhHHhccCCCCeEEecCccccccc
Q 037794          162 DCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEV  195 (293)
Q Consensus       162 ~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i  195 (293)
                      +|. +.. ++...+..+++|+.|++.++ .+..+
T Consensus       161 ~n~-l~~-~~~~~l~~l~~L~~L~l~~n-~i~~~  191 (477)
T 2id5_A          161 KCN-LTS-IPTEALSHLHGLIVLRLRHL-NINAI  191 (477)
T ss_dssp             SCC-CSS-CCHHHHTTCTTCCEEEEESC-CCCEE
T ss_pred             CCc-Ccc-cChhHhcccCCCcEEeCCCC-cCcEe
Confidence            875 344 36666778888888888874 34443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.59  E-value=5.6e-15  Score=128.80  Aligned_cols=152  Identities=12%  Similarity=0.155  Sum_probs=81.5

Q ss_pred             CCcceEeccccccce--Eeccccccccccccccccccceeecccccccc-ccccccccccCCCcceEeEcCCCCcccccc
Q 037794            5 NSLVNLNVSYCEKIE--EIIGHVGEEAKENRIAFNELKFLELDDLPRLT-SFCLENYTLEFPSLERVFVTRCPNMKTFSQ   81 (293)
Q Consensus         5 ~~L~~L~l~~c~~l~--~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~   81 (293)
                      .++++|+++++.--.  .++....        .+++|++|+++++..+. .++..  ...+++|++|+++++.-...+|.
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~--------~l~~L~~L~L~~~n~l~~~~p~~--l~~l~~L~~L~Ls~n~l~~~~p~  119 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLA--------NLPYLNFLYIGGINNLVGPIPPA--IAKLTQLHYLYITHTNVSGAIPD  119 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGG--------GCTTCSEEEEEEETTEESCCCGG--GGGCTTCSEEEEEEECCEEECCG
T ss_pred             ceEEEEECCCCCccCCcccChhHh--------CCCCCCeeeCCCCCcccccCChh--HhcCCCCCEEECcCCeeCCcCCH
Confidence            467778887764333  4554333        37778888877533333 33332  45677788888777643336666


Q ss_pred             CccCCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCCCCce-EeccCCCCCcccCC-CccEEE
Q 037794           82 GIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRLK-EIWHGQALPVSFFN-NLFKLV  159 (293)
Q Consensus        82 ~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~~~~~l~-~L~~L~  159 (293)
                      .+..+++|+.|+++++              .....++..+..+++|++|+++++. +. .++. .   +..++ +|++|+
T Consensus       120 ~~~~l~~L~~L~Ls~N--------------~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~-~---l~~l~~~L~~L~  180 (313)
T 1ogq_A          120 FLSQIKTLVTLDFSYN--------------ALSGTLPPSISSLPNLVGITFDGNR-ISGAIPD-S---YGSFSKLFTSMT  180 (313)
T ss_dssp             GGGGCTTCCEEECCSS--------------EEESCCCGGGGGCTTCCEEECCSSC-CEEECCG-G---GGCCCTTCCEEE
T ss_pred             HHhCCCCCCEEeCCCC--------------ccCCcCChHHhcCCCCCeEECcCCc-ccCcCCH-H---HhhhhhcCcEEE
Confidence            6677777777777765              1111233334556666666666643 33 2221 1   22333 556666


Q ss_pred             eccCCCCCccCChhHHhccCCCCeEEecC
Q 037794          160 VDDCANMSSAIPANLLRCLSNLRWLEVRN  188 (293)
Q Consensus       160 i~~c~~l~~~~p~~~~~~l~~L~~L~i~~  188 (293)
                      ++++..... +|.. +..++ |+.|++.+
T Consensus       181 L~~N~l~~~-~~~~-~~~l~-L~~L~Ls~  206 (313)
T 1ogq_A          181 ISRNRLTGK-IPPT-FANLN-LAFVDLSR  206 (313)
T ss_dssp             CCSSEEEEE-CCGG-GGGCC-CSEEECCS
T ss_pred             CcCCeeecc-CChH-HhCCc-ccEEECcC
Confidence            655543222 2332 33343 55555555

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.59  E-value=1e-14  Score=126.39  Aligned_cols=157  Identities=18%  Similarity=0.249  Sum_probs=86.1

Q ss_pred             CCCCcceEeccccccceEeccccccccccccccccccceeecccccccccccc-ccccccCCCcceEeEcCCCCcccccc
Q 037794            3 IPNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCL-ENYTLEFPSLERVFVTRCPNMKTFSQ   81 (293)
Q Consensus         3 ~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~~~L~~L~i~~c~~l~~lp~   81 (293)
                      ..++|++|+++++ .++.++...-       ..+++|++|+++++. +..... ......+++|+.|+++++ .+..+|.
T Consensus        26 ~~~~l~~L~L~~n-~l~~i~~~~~-------~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~l~~   95 (306)
T 2z66_A           26 IPSSATRLELESN-KLQSLPHGVF-------DKLTQLTKLSLSSNG-LSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSS   95 (306)
T ss_dssp             CCTTCCEEECCSS-CCCCCCTTTT-------TTCTTCSEEECCSSC-CCEEEEEEHHHHSCSCCCEEECCSC-SEEEEEE
T ss_pred             CCCCCCEEECCCC-ccCccCHhHh-------hccccCCEEECCCCc-cCcccCcccccccccccCEEECCCC-ccccChh
Confidence            3467888888886 5666665321       137888888887763 222210 111335788888888876 4556666


Q ss_pred             CccCCCCeeEEEeccccccccccccCccchhhhhhhh--hhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEE
Q 037794           82 GIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRY--EEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLV  159 (293)
Q Consensus        82 ~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~  159 (293)
                      .+..+++|+.|+++++.               +..+.  ..+..+++|+.|+++++. +..+....   +..+++|++|+
T Consensus        96 ~~~~l~~L~~L~l~~n~---------------l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~---~~~l~~L~~L~  156 (306)
T 2z66_A           96 NFLGLEQLEHLDFQHSN---------------LKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGI---FNGLSSLEVLK  156 (306)
T ss_dssp             EEETCTTCCEEECTTSE---------------EESSTTTTTTTTCTTCCEEECTTSC-CEECSTTT---TTTCTTCCEEE
T ss_pred             hcCCCCCCCEEECCCCc---------------ccccccchhhhhccCCCEEECCCCc-CCccchhh---cccCcCCCEEE
Confidence            67778888888887651               11111  123445566666666543 33222222   33445566666


Q ss_pred             eccCCCCCccCChhHHhccCCCCeEEecCc
Q 037794          160 VDDCANMSSAIPANLLRCLSNLRWLEVRNC  189 (293)
Q Consensus       160 i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c  189 (293)
                      ++++......+|. .+..+++|++|+++++
T Consensus       157 l~~n~l~~~~~~~-~~~~l~~L~~L~Ls~n  185 (306)
T 2z66_A          157 MAGNSFQENFLPD-IFTELRNLTFLDLSQC  185 (306)
T ss_dssp             CTTCEEGGGEECS-CCTTCTTCCEEECTTS
T ss_pred             CCCCccccccchh-HHhhCcCCCEEECCCC
Confidence            6555432212222 2444555666666553

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.59  E-value=3.2e-14  Score=134.56  Aligned_cols=236  Identities=14%  Similarity=0.103  Sum_probs=138.4

Q ss_pred             CCCCCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCcccc-
Q 037794            1 VGIPNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTF-   79 (293)
Q Consensus         1 ~g~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l-   79 (293)
                      ++.+++|++|+++++ .+..++...       ...+++|+.|+++++.....++.. ....+++|++|+++++.-.... 
T Consensus       297 l~~l~~L~~L~l~~n-~l~~~~~~~-------~~~l~~L~~L~l~~n~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~  367 (606)
T 3t6q_A          297 LVGLSTLKKLVLSAN-KFENLCQIS-------ASNFPSLTHLSIKGNTKRLELGTG-CLENLENLRELDLSHDDIETSDC  367 (606)
T ss_dssp             CCSCTTCCEEECTTC-CCSBGGGGC-------GGGCTTCSEEECCSCSSCCBCCSS-TTTTCTTCCEEECCSSCCCEEEE
T ss_pred             hcccccCCEEECccC-CcCcCchhh-------hhccCcCCEEECCCCCcccccchh-hhhccCcCCEEECCCCccccccC
Confidence            356788999999887 444443321       122667777777666433233322 1335566666666665322211 


Q ss_pred             -ccCccCCCCeeEEEecccccccc--ccccCc------cc--hhhhhhhh-hhhccCCCccEEEecCCCCceEeccCCCC
Q 037794           80 -SQGIVSTPKLHEVQVSKKEEDEL--HHWEGN------KL--NSTIQKRY-EEMIGFRDIERLQLSHFPRLKEIWHGQAL  147 (293)
Q Consensus        80 -p~~~~~~~~L~~L~l~~c~~~~~--~~~~~~------~~--~~~~~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~  147 (293)
                       +..+..+++|+.|+++++.-...  ..+...      ++  +......+ ..+..+++|+.|+++++. +.......  
T Consensus       368 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~--  444 (606)
T 3t6q_A          368 CNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL-LDISSEQL--  444 (606)
T ss_dssp             STTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCC-CBTTCTTT--
T ss_pred             cchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCc-cCCcCHHH--
Confidence             34445566666666665521100  000000      00  00001111 124678999999999965 44332222  


Q ss_pred             CcccCCCccEEEeccCCCCCccCCh-hHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCC
Q 037794          148 PVSFFNNLFKLVVDDCANMSSAIPA-NLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKL  226 (293)
Q Consensus       148 ~~~~l~~L~~L~i~~c~~l~~~~p~-~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l  226 (293)
                       +..+++|++|++++|......++. ..+..+++|+.|++.+| .++.++. ..+.        .+++|++|+++++ .+
T Consensus       445 -~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~~--------~l~~L~~L~Ls~N-~l  512 (606)
T 3t6q_A          445 -FDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC-DLSSIDQ-HAFT--------SLKMMNHVDLSHN-RL  512 (606)
T ss_dssp             -TTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS-CCCEECT-TTTT--------TCTTCCEEECCSS-CC
T ss_pred             -HhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCC-ccCccCh-hhhc--------cccCCCEEECCCC-cc
Confidence             557899999999999755422222 35788999999999996 4544431 2222        2499999999996 56


Q ss_pred             ceeccCCCccccCCCcceEeeecCCCccccccccchhh
Q 037794          227 KRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVLHV  264 (293)
Q Consensus       227 ~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~p~~l~~l  264 (293)
                      +.+..  ..+..+++| +|++++| +++.+.|..++.+
T Consensus       513 ~~~~~--~~l~~l~~L-~L~L~~N-~l~~~~~~~~~~l  546 (606)
T 3t6q_A          513 TSSSI--EALSHLKGI-YLNLASN-HISIILPSLLPIL  546 (606)
T ss_dssp             CGGGG--GGGTTCCSC-EEECCSS-CCCCCCGGGHHHH
T ss_pred             CcCCh--hHhCccccc-EEECcCC-cccccCHhhcccC
Confidence            55433  677889999 9999998 6877745445544

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.58  E-value=6.6e-14  Score=123.35  Aligned_cols=38  Identities=11%  Similarity=0.191  Sum_probs=24.4

Q ss_pred             CcccEEecCCCCCCceeccCCCccccCCCcceEeeecCCCcccc
Q 037794          213 PRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETF  256 (293)
Q Consensus       213 ~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l  256 (293)
                      ++|++|++.++ .++.+    ..+..+++|++|++++| +++.+
T Consensus       243 ~~L~~L~l~~n-~l~~~----~~~~~l~~L~~L~l~~n-~l~~~  280 (347)
T 4fmz_A          243 SQLTWLEIGTN-QISDI----NAVKDLTKLKMLNVGSN-QISDI  280 (347)
T ss_dssp             TTCCEEECCSS-CCCCC----GGGTTCTTCCEEECCSS-CCCCC
T ss_pred             CCCCEEECCCC-ccCCC----hhHhcCCCcCEEEccCC-ccCCC
Confidence            67777777665 45444    34566777777777776 56655

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.58  E-value=1.1e-15  Score=134.10  Aligned_cols=211  Identities=13%  Similarity=0.110  Sum_probs=122.3

Q ss_pred             CCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccCcc
Q 037794            5 NSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGIV   84 (293)
Q Consensus         5 ~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~   84 (293)
                      +++++|+++++ .+...+...        ..+++|++|+++++. +...........+++|++|++++|.--...+..+.
T Consensus        70 ~~l~~L~l~~n-~l~~~~~~~--------~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~  139 (336)
T 2ast_B           70 QGVIAFRCPRS-FMDQPLAEH--------FSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLA  139 (336)
T ss_dssp             TTCSEEECTTC-EECSCCCSC--------CCCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHT
T ss_pred             ccceEEEcCCc-cccccchhh--------ccCCCCCEEEccCCC-cCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHh
Confidence            67778888775 333333221        237788888888775 33211111244678888888888743324555566


Q ss_pred             CCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCC-CccEEEeccC
Q 037794           85 STPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFN-NLFKLVVDDC  163 (293)
Q Consensus        85 ~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~-~L~~L~i~~c  163 (293)
                      .+++|+.|++++|...            ....+...+..+++|++|++++|..++.....  .....++ +|++|++++|
T Consensus       140 ~~~~L~~L~L~~~~~l------------~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~l~~~L~~L~l~~~  205 (336)
T 2ast_B          140 KNSNLVRLNLSGCSGF------------SEFALQTLLSSCSRLDELNLSWCFDFTEKHVQ--VAVAHVSETITQLNLSGY  205 (336)
T ss_dssp             TCTTCSEEECTTCBSC------------CHHHHHHHHHHCTTCCEEECCCCTTCCHHHHH--HHHHHSCTTCCEEECCSC
T ss_pred             cCCCCCEEECCCCCCC------------CHHHHHHHHhcCCCCCEEcCCCCCCcChHHHH--HHHHhcccCCCEEEeCCC
Confidence            7888888888876100            00123334456778888888877555532100  0033456 7888888877


Q ss_pred             C-CCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceeccCCCccccCCCc
Q 037794          164 A-NMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPML  242 (293)
Q Consensus       164 ~-~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L  242 (293)
                      . .+.+......+..+++|++|++.+|..++...- ..+..       . ++|++|++.+|..+.....  ..+..+++|
T Consensus       206 ~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~-~~l~~-------l-~~L~~L~l~~~~~~~~~~~--~~l~~~~~L  274 (336)
T 2ast_B          206 RKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF-QEFFQ-------L-NYLQHLSLSRCYDIIPETL--LELGEIPTL  274 (336)
T ss_dssp             GGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGG-GGGGG-------C-TTCCEEECTTCTTCCGGGG--GGGGGCTTC
T ss_pred             cccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHH-HHHhC-------C-CCCCEeeCCCCCCCCHHHH--HHHhcCCCC
Confidence            5 343111223456678888888888765443211 12212       3 7788888887764443211  245667788


Q ss_pred             ceEeeecC
Q 037794          243 WSLTIENC  250 (293)
Q Consensus       243 ~~L~i~~C  250 (293)
                      ++|++++|
T Consensus       275 ~~L~l~~~  282 (336)
T 2ast_B          275 KTLQVFGI  282 (336)
T ss_dssp             CEEECTTS
T ss_pred             CEEeccCc
Confidence            88888877

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.58  E-value=2.2e-15  Score=132.17  Aligned_cols=220  Identities=19%  Similarity=0.185  Sum_probs=130.2

Q ss_pred             CCCCCcceEeccccccceE--eccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCcc--
Q 037794            2 GIPNSLVNLNVSYCEKIEE--IIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMK--   77 (293)
Q Consensus         2 g~l~~L~~L~l~~c~~l~~--i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~--   77 (293)
                      ..+++|++|++++|. +..  ++..        ...+++|++|+++++..-...+..  ...+++|++|++++|..++  
T Consensus        90 ~~~~~L~~L~L~~~~-l~~~~~~~~--------~~~~~~L~~L~L~~~~l~~~~~~~--l~~~~~L~~L~L~~~~~l~~~  158 (336)
T 2ast_B           90 FSPFRVQHMDLSNSV-IEVSTLHGI--------LSQCSKLQNLSLEGLRLSDPIVNT--LAKNSNLVRLNLSGCSGFSEF  158 (336)
T ss_dssp             CCCBCCCEEECTTCE-ECHHHHHHH--------HTTBCCCSEEECTTCBCCHHHHHH--HTTCTTCSEEECTTCBSCCHH
T ss_pred             ccCCCCCEEEccCCC-cCHHHHHHH--------HhhCCCCCEEeCcCcccCHHHHHH--HhcCCCCCEEECCCCCCCCHH
Confidence            346788888888874 322  2221        123788888888887422222221  3457888888888886666  


Q ss_pred             ccccCccCCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCC-CccEEEecCCC-CceEeccCCCCCcccCCCc
Q 037794           78 TFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFR-DIERLQLSHFP-RLKEIWHGQALPVSFFNNL  155 (293)
Q Consensus        78 ~lp~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~L~~L~l~~~~-~l~~~~~~~~~~~~~l~~L  155 (293)
                      .++..+..+++|+.|.+++|...            ....+...+..++ +|++|++++|. .++.....  .....+++|
T Consensus       159 ~l~~~~~~~~~L~~L~l~~~~~l------------~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~--~~~~~~~~L  224 (336)
T 2ast_B          159 ALQTLLSSCSRLDELNLSWCFDF------------TEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLS--TLVRRCPNL  224 (336)
T ss_dssp             HHHHHHHHCTTCCEEECCCCTTC------------CHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHH--HHHHHCTTC
T ss_pred             HHHHHHhcCCCCCEEcCCCCCCc------------ChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHH--HHHhhCCCC
Confidence            35655667888888888876111            0112334456677 88888888874 23311100  013456888


Q ss_pred             cEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceeccCCCc
Q 037794          156 FKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGN  235 (293)
Q Consensus       156 ~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~  235 (293)
                      ++|++++|..+.+..+. .+.++++|++|++.+|..+....- ..+.        .+++|++|++.+|  +.+     ..
T Consensus       225 ~~L~l~~~~~l~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~-~~l~--------~~~~L~~L~l~~~--i~~-----~~  287 (336)
T 2ast_B          225 VHLDLSDSVMLKNDCFQ-EFFQLNYLQHLSLSRCYDIIPETL-LELG--------EIPTLKTLQVFGI--VPD-----GT  287 (336)
T ss_dssp             SEEECTTCTTCCGGGGG-GGGGCTTCCEEECTTCTTCCGGGG-GGGG--------GCTTCCEEECTTS--SCT-----TC
T ss_pred             CEEeCCCCCcCCHHHHH-HHhCCCCCCEeeCCCCCCCCHHHH-HHHh--------cCCCCCEEeccCc--cCH-----HH
Confidence            88888888765543343 366788888888888764433210 1111        2388888888887  322     23


Q ss_pred             cccC-CCcceEeeecCCCccccccccchhh
Q 037794          236 IIEM-PMLWSLTIENCPDMETFISNSVLHV  264 (293)
Q Consensus       236 ~~~l-~~L~~L~i~~C~~L~~l~p~~l~~l  264 (293)
                      +..+ ..++.|++++ .+++...|...+.-
T Consensus       288 ~~~l~~~l~~L~l~~-n~l~~~~~~~~~~~  316 (336)
T 2ast_B          288 LQLLKEALPHLQINC-SHFTTIARPTIGNK  316 (336)
T ss_dssp             HHHHHHHSTTSEESC-CCSCCTTCSSCSST
T ss_pred             HHHHHhhCcceEEec-ccCccccCCccccc
Confidence            3333 2366666754 46777766666554

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.58  E-value=7.3e-14  Score=123.08  Aligned_cols=211  Identities=16%  Similarity=0.216  Sum_probs=119.1

Q ss_pred             CCCCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCcccccc
Q 037794            2 GIPNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQ   81 (293)
Q Consensus         2 g~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~   81 (293)
                      +.+++|++|++++| .++.++.         ...+++|++|+++++. +..++.   ...+++|+.|++++|..+..++.
T Consensus        85 ~~l~~L~~L~L~~n-~i~~~~~---------~~~l~~L~~L~l~~n~-i~~~~~---~~~l~~L~~L~l~~n~~~~~~~~  150 (347)
T 4fmz_A           85 SNLVKLTNLYIGTN-KITDISA---------LQNLTNLRELYLNEDN-ISDISP---LANLTKMYSLNLGANHNLSDLSP  150 (347)
T ss_dssp             TTCTTCCEEECCSS-CCCCCGG---------GTTCTTCSEEECTTSC-CCCCGG---GTTCTTCCEEECTTCTTCCCCGG
T ss_pred             hcCCcCCEEEccCC-cccCchH---------HcCCCcCCEEECcCCc-ccCchh---hccCCceeEEECCCCCCcccccc
Confidence            56889999999987 5665542         2237888888888764 333433   34678888888888776665533


Q ss_pred             CccCCCCeeEEEeccccccccccccCc------cch-hhhhhhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCC
Q 037794           82 GIVSTPKLHEVQVSKKEEDELHHWEGN------KLN-STIQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNN  154 (293)
Q Consensus        82 ~~~~~~~L~~L~l~~c~~~~~~~~~~~------~~~-~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~  154 (293)
                       +..+++|+.|.+.+|.-.....+...      ++. ..+..+.. +..+++|+.+.++++. +..+.     ++..+++
T Consensus       151 -~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~-----~~~~~~~  222 (347)
T 4fmz_A          151 -LSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQ-ITDIT-----PVANMTR  222 (347)
T ss_dssp             -GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSC-CCCCG-----GGGGCTT
T ss_pred             -hhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCccccccc-ccCCCccceeecccCC-CCCCc-----hhhcCCc
Confidence             56777788888777621110000000      000 00011111 2344555555554432 22111     1345567


Q ss_pred             ccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceeccCCC
Q 037794          155 LFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTG  234 (293)
Q Consensus       155 L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~  234 (293)
                      |++|++++|.... . +.  +..+++|++|++.+| .++.+.   ..        ..+++|++|++.++ .++++    .
T Consensus       223 L~~L~l~~n~l~~-~-~~--~~~l~~L~~L~l~~n-~l~~~~---~~--------~~l~~L~~L~l~~n-~l~~~----~  281 (347)
T 4fmz_A          223 LNSLKIGNNKITD-L-SP--LANLSQLTWLEIGTN-QISDIN---AV--------KDLTKLKMLNVGSN-QISDI----S  281 (347)
T ss_dssp             CCEEECCSSCCCC-C-GG--GTTCTTCCEEECCSS-CCCCCG---GG--------TTCTTCCEEECCSS-CCCCC----G
T ss_pred             CCEEEccCCccCC-C-cc--hhcCCCCCEEECCCC-ccCCCh---hH--------hcCCCcCEEEccCC-ccCCC----h
Confidence            7777777665332 2 22  566777777777764 333332   11        12378888888876 56554    3


Q ss_pred             ccccCCCcceEeeecCCCcccc
Q 037794          235 NIIEMPMLWSLTIENCPDMETF  256 (293)
Q Consensus       235 ~~~~l~~L~~L~i~~C~~L~~l  256 (293)
                      .+..+++|++|++++| +++..
T Consensus       282 ~~~~l~~L~~L~L~~n-~l~~~  302 (347)
T 4fmz_A          282 VLNNLSQLNSLFLNNN-QLGNE  302 (347)
T ss_dssp             GGGGCTTCSEEECCSS-CCCGG
T ss_pred             hhcCCCCCCEEECcCC-cCCCc
Confidence            4667788888888887 46555

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.58  E-value=1.2e-14  Score=141.51  Aligned_cols=221  Identities=15%  Similarity=0.112  Sum_probs=130.8

Q ss_pred             CCCCCcceEeccccccceEeccccccccccccccccccceeecccccccccccccccccc--------------------
Q 037794            2 GIPNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLE--------------------   61 (293)
Q Consensus         2 g~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~--------------------   61 (293)
                      +.+++|++|++++|.....++...       ...+++|++|+++++.....++..  ...                    
T Consensus       315 ~~l~~L~~L~L~~n~l~~~ip~~~-------l~~l~~L~~L~Ls~n~l~~~~p~~--l~~l~~~L~~L~Ls~N~l~~~~~  385 (768)
T 3rgz_A          315 GSCSLLESLALSSNNFSGELPMDT-------LLKMRGLKVLDLSFNEFSGELPES--LTNLSASLLTLDLSSNNFSGPIL  385 (768)
T ss_dssp             GGCTTCCEEECCSSEEEEECCHHH-------HTTCTTCCEEECCSSEEEECCCTT--HHHHTTTCSEEECCSSEEEEECC
T ss_pred             hcCCCccEEECCCCcccCcCCHHH-------HhcCCCCCEEeCcCCccCccccHH--HHhhhcCCcEEEccCCCcCCCcC
Confidence            467888888888875444666431       112666777766665432223222  122                    


Q ss_pred             -------CCCcceEeEcCCCCccccccCccCCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecC
Q 037794           62 -------FPSLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSH  134 (293)
Q Consensus        62 -------~~~L~~L~i~~c~~l~~lp~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~  134 (293)
                             +++|++|++.+|.....+|..+..+++|+.|++++|              ...+..+..+..+++|+.|++++
T Consensus       386 ~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N--------------~l~~~~p~~l~~l~~L~~L~L~~  451 (768)
T 3rgz_A          386 PNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN--------------YLSGTIPSSLGSLSKLRDLKLWL  451 (768)
T ss_dssp             TTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSS--------------EEESCCCGGGGGCTTCCEEECCS
T ss_pred             hhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCC--------------cccCcccHHHhcCCCCCEEECCC
Confidence                   345555555554333344555555555555555544              11123334456677888888877


Q ss_pred             CCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCc
Q 037794          135 FPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPR  214 (293)
Q Consensus       135 ~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~  214 (293)
                      +.-...++ ..   +..+++|++|++++|..... +|.. +.++++|+.|++.+|.-...++  ..+..        +++
T Consensus       452 n~l~~~~p-~~---~~~l~~L~~L~L~~N~l~~~-~p~~-l~~l~~L~~L~L~~N~l~~~~p--~~~~~--------l~~  515 (768)
T 3rgz_A          452 NMLEGEIP-QE---LMYVKTLETLILDFNDLTGE-IPSG-LSNCTNLNWISLSNNRLTGEIP--KWIGR--------LEN  515 (768)
T ss_dssp             SCCCSCCC-GG---GGGCTTCCEEECCSSCCCSC-CCGG-GGGCTTCCEEECCSSCCCSCCC--GGGGG--------CTT
T ss_pred             CcccCcCC-HH---HcCCCCceEEEecCCcccCc-CCHH-HhcCCCCCEEEccCCccCCcCC--hHHhc--------CCC
Confidence            65322222 11   45668888888888765544 3544 7778888888888865333333  22222        388


Q ss_pred             ccEEecCCCCCCceeccCCCccccCCCcceEeeecCCCccccccccchhhc
Q 037794          215 LFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVLHVT  265 (293)
Q Consensus       215 L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~p~~l~~l~  265 (293)
                      |++|++.++.-...++   ..+..+++|+.|++++|+--..+ |.++....
T Consensus       516 L~~L~L~~N~l~~~~p---~~l~~l~~L~~L~Ls~N~l~g~i-p~~~~~~~  562 (768)
T 3rgz_A          516 LAILKLSNNSFSGNIP---AELGDCRSLIWLDLNTNLFNGTI-PAAMFKQS  562 (768)
T ss_dssp             CCEEECCSSCCEEECC---GGGGGCTTCCEEECCSSEEESBC-CGGGGTTT
T ss_pred             CCEEECCCCcccCcCC---HHHcCCCCCCEEECCCCccCCcC-ChHHhccc
Confidence            9999999874333433   67788999999999998533355 87776543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.58  E-value=8e-14  Score=127.48  Aligned_cols=206  Identities=17%  Similarity=0.187  Sum_probs=116.7

Q ss_pred             CCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccC-
Q 037794            4 PNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQG-   82 (293)
Q Consensus         4 l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~-   82 (293)
                      .+++++|+++++ .++.++...       ...+++|+.|+++++. +..+... ...++++|+.|+++++ .++.+|.. 
T Consensus        74 ~~~l~~L~L~~n-~i~~~~~~~-------~~~l~~L~~L~Ls~n~-i~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~~  142 (452)
T 3zyi_A           74 PSNTRYLNLMEN-NIQMIQADT-------FRHLHHLEVLQLGRNS-IRQIEVG-AFNGLASLNTLELFDN-WLTVIPSGA  142 (452)
T ss_dssp             CTTCSEEECCSS-CCCEECTTT-------TTTCTTCCEEECCSSC-CCEECTT-TTTTCTTCCEEECCSS-CCSBCCTTT
T ss_pred             CCCccEEECcCC-cCceECHHH-------cCCCCCCCEEECCCCc-cCCcChh-hccCcccCCEEECCCC-cCCccChhh
Confidence            457888888886 566655432       2237888888888763 4444332 2446788888888886 46655543 


Q ss_pred             ccCCCCeeEEEeccccccccccccCccchhhhhhhh-hhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEec
Q 037794           83 IVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRY-EEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVD  161 (293)
Q Consensus        83 ~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~  161 (293)
                      +..+++|+.|+++++.               +..++ ..+..+++|+.|+++++..++.++.+.   +..+++|++|+++
T Consensus       143 ~~~l~~L~~L~L~~N~---------------l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~---~~~l~~L~~L~L~  204 (452)
T 3zyi_A          143 FEYLSKLRELWLRNNP---------------IESIPSYAFNRVPSLMRLDLGELKKLEYISEGA---FEGLFNLKYLNLG  204 (452)
T ss_dssp             SSSCTTCCEEECCSCC---------------CCEECTTTTTTCTTCCEEECCCCTTCCEECTTT---TTTCTTCCEEECT
T ss_pred             hcccCCCCEEECCCCC---------------cceeCHhHHhcCCcccEEeCCCCCCccccChhh---ccCCCCCCEEECC
Confidence            5678888888888651               11111 123556777777777777677666544   4456667777776


Q ss_pred             cCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceeccCCCccccCCC
Q 037794          162 DCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPM  241 (293)
Q Consensus       162 ~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~  241 (293)
                      +|.. ..+ |.  +..+++|++|++.++ .++.+.. ..+.        .+++|++|++.++ .++.+..  ..+..+++
T Consensus       205 ~n~l-~~~-~~--~~~l~~L~~L~Ls~N-~l~~~~~-~~~~--------~l~~L~~L~L~~n-~l~~~~~--~~~~~l~~  267 (452)
T 3zyi_A          205 MCNI-KDM-PN--LTPLVGLEELEMSGN-HFPEIRP-GSFH--------GLSSLKKLWVMNS-QVSLIER--NAFDGLAS  267 (452)
T ss_dssp             TSCC-SSC-CC--CTTCTTCCEEECTTS-CCSEECG-GGGT--------TCTTCCEEECTTS-CCCEECT--TTTTTCTT
T ss_pred             CCcc-ccc-cc--ccccccccEEECcCC-cCcccCc-cccc--------CccCCCEEEeCCC-cCceECH--HHhcCCCC
Confidence            6643 222 32  455666666666663 3333321 1111        1255555555553 3444322  33444555


Q ss_pred             cceEeeecCCCcccc
Q 037794          242 LWSLTIENCPDMETF  256 (293)
Q Consensus       242 L~~L~i~~C~~L~~l  256 (293)
                      |++|+++++ +++.+
T Consensus       268 L~~L~L~~N-~l~~~  281 (452)
T 3zyi_A          268 LVELNLAHN-NLSSL  281 (452)
T ss_dssp             CCEEECCSS-CCSCC
T ss_pred             CCEEECCCC-cCCcc
Confidence            555555554 44444

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.58  E-value=8.8e-14  Score=127.91  Aligned_cols=225  Identities=16%  Similarity=0.137  Sum_probs=131.0

Q ss_pred             CCCCCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccc
Q 037794            1 VGIPNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFS   80 (293)
Q Consensus         1 ~g~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp   80 (293)
                      ++++++|++|+++++ .++.++...-       ..+++|++|+++++.. ..+... ....+++|+.|++.++.--...+
T Consensus        76 ~~~l~~L~~L~L~~n-~l~~~~~~~~-------~~l~~L~~L~Ls~n~i-~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~  145 (477)
T 2id5_A           76 FNNLFNLRTLGLRSN-RLKLIPLGVF-------TGLSNLTKLDISENKI-VILLDY-MFQDLYNLKSLEVGDNDLVYISH  145 (477)
T ss_dssp             TTTCTTCCEEECCSS-CCCSCCTTSS-------TTCTTCCEEECTTSCC-CEECTT-TTTTCTTCCEEEECCTTCCEECT
T ss_pred             hhCCccCCEEECCCC-cCCccCcccc-------cCCCCCCEEECCCCcc-ccCChh-HccccccCCEEECCCCccceeCh
Confidence            357889999999886 5666665321       1278888888887643 323221 14467788888887754322334


Q ss_pred             cCccCCCCeeEEEecccccccccc---ccCc------cch-hhhhhh-hhhhccCCCccEEEecCCCCceEeccCCCCCc
Q 037794           81 QGIVSTPKLHEVQVSKKEEDELHH---WEGN------KLN-STIQKR-YEEMIGFRDIERLQLSHFPRLKEIWHGQALPV  149 (293)
Q Consensus        81 ~~~~~~~~L~~L~l~~c~~~~~~~---~~~~------~~~-~~~~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~  149 (293)
                      ..+..+++|+.|.+.+|. .....   +...      .+. ..+..+ ...+..+++|+.|+++++..+..++...    
T Consensus       146 ~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~----  220 (477)
T 2id5_A          146 RAFSGLNSLEQLTLEKCN-LTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNC----  220 (477)
T ss_dssp             TSSTTCTTCCEEEEESCC-CSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTT----
T ss_pred             hhccCCCCCCEEECCCCc-CcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCccc----
Confidence            456677888888887661 11100   0000      000 000001 1123456677777777766666555332    


Q ss_pred             ccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCcee
Q 037794          150 SFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRF  229 (293)
Q Consensus       150 ~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~  229 (293)
                      ....+|++|++++|. +.. ++...+..+++|+.|++.++. ++.++. ..+.        .+++|++|.+.++ .++.+
T Consensus       221 ~~~~~L~~L~l~~n~-l~~-~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~~--------~l~~L~~L~L~~n-~l~~~  287 (477)
T 2id5_A          221 LYGLNLTSLSITHCN-LTA-VPYLAVRHLVYLRFLNLSYNP-ISTIEG-SMLH--------ELLRLQEIQLVGG-QLAVV  287 (477)
T ss_dssp             TTTCCCSEEEEESSC-CCS-CCHHHHTTCTTCCEEECCSSC-CCEECT-TSCT--------TCTTCCEEECCSS-CCSEE
T ss_pred             ccCccccEEECcCCc-ccc-cCHHHhcCccccCeeECCCCc-CCccCh-hhcc--------ccccCCEEECCCC-ccceE
Confidence            122478888887775 334 366667888888888888843 544432 1111        2367777777774 45555


Q ss_pred             ccCCCccccCCCcceEeeecCCCcccc
Q 037794          230 CNFTGNIIEMPMLWSLTIENCPDMETF  256 (293)
Q Consensus       230 ~~~~~~~~~l~~L~~L~i~~C~~L~~l  256 (293)
                      ..  ..+..+++|++|+++++ +++.+
T Consensus       288 ~~--~~~~~l~~L~~L~L~~N-~l~~~  311 (477)
T 2id5_A          288 EP--YAFRGLNYLRVLNVSGN-QLTTL  311 (477)
T ss_dssp             CT--TTBTTCTTCCEEECCSS-CCSCC
T ss_pred             CH--HHhcCcccCCEEECCCC-cCcee
Confidence            33  45666777777777776 56665

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.57  E-value=4.8e-14  Score=128.50  Aligned_cols=153  Identities=20%  Similarity=0.208  Sum_probs=90.5

Q ss_pred             CCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCcccccc-C
Q 037794            4 PNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQ-G   82 (293)
Q Consensus         4 l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~-~   82 (293)
                      .+++++|+++++ .++.++...       ...+++|++|+++++. +..+... ....+++|++|+++++ .++.+|. .
T Consensus        63 ~~~l~~L~L~~n-~i~~~~~~~-------~~~l~~L~~L~Ls~n~-i~~i~~~-~~~~l~~L~~L~L~~n-~l~~~~~~~  131 (440)
T 3zyj_A           63 STNTRLLNLHEN-QIQIIKVNS-------FKHLRHLEILQLSRNH-IRTIEIG-AFNGLANLNTLELFDN-RLTTIPNGA  131 (440)
T ss_dssp             CTTCSEEECCSC-CCCEECTTT-------TSSCSSCCEEECCSSC-CCEECGG-GGTTCSSCCEEECCSS-CCSSCCTTT
T ss_pred             CCCCcEEEccCC-cCCeeCHHH-------hhCCCCCCEEECCCCc-CCccChh-hccCCccCCEEECCCC-cCCeeCHhH
Confidence            467888888886 566665432       1237888888887763 3444322 2446788888888875 5665554 4


Q ss_pred             ccCCCCeeEEEeccccccccccccCccchhhhhhhh-hhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEec
Q 037794           83 IVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRY-EEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVD  161 (293)
Q Consensus        83 ~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~  161 (293)
                      +..+++|+.|+++++.               +..+. ..+..+++|+.|+++++..+..++.+.   +..+++|++|+++
T Consensus       132 ~~~l~~L~~L~L~~N~---------------i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~---~~~l~~L~~L~L~  193 (440)
T 3zyj_A          132 FVYLSKLKELWLRNNP---------------IESIPSYAFNRIPSLRRLDLGELKRLSYISEGA---FEGLSNLRYLNLA  193 (440)
T ss_dssp             SCSCSSCCEEECCSCC---------------CCEECTTTTTTCTTCCEEECCCCTTCCEECTTT---TTTCSSCCEEECT
T ss_pred             hhccccCceeeCCCCc---------------ccccCHHHhhhCcccCEeCCCCCCCcceeCcch---hhcccccCeecCC
Confidence            5677888888887651               11111 123456667777776666666655443   4455666666666


Q ss_pred             cCCCCCccCChhHHhccCCCCeEEecCc
Q 037794          162 DCANMSSAIPANLLRCLSNLRWLEVRNC  189 (293)
Q Consensus       162 ~c~~l~~~~p~~~~~~l~~L~~L~i~~c  189 (293)
                      +|. +..+ |.  +..+++|++|++.++
T Consensus       194 ~n~-l~~~-~~--~~~l~~L~~L~Ls~N  217 (440)
T 3zyj_A          194 MCN-LREI-PN--LTPLIKLDELDLSGN  217 (440)
T ss_dssp             TSC-CSSC-CC--CTTCSSCCEEECTTS
T ss_pred             CCc-Cccc-cc--cCCCcccCEEECCCC
Confidence            653 2222 32  445566666666653

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.57  E-value=8.9e-14  Score=121.84  Aligned_cols=216  Identities=19%  Similarity=0.235  Sum_probs=120.8

Q ss_pred             CCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccCc
Q 037794            4 PNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGI   83 (293)
Q Consensus         4 l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~   83 (293)
                      .++|++|+++++ .++.++...       ...+++|++|+++++. +..+... ....+++|++|+++++ .++.+|..+
T Consensus        51 ~~~l~~L~L~~n-~i~~~~~~~-------~~~l~~L~~L~L~~n~-l~~~~~~-~~~~l~~L~~L~Ls~n-~l~~l~~~~  119 (330)
T 1xku_A           51 PPDTALLDLQNN-KITEIKDGD-------FKNLKNLHTLILINNK-ISKISPG-AFAPLVKLERLYLSKN-QLKELPEKM  119 (330)
T ss_dssp             CTTCCEEECCSS-CCCCBCTTT-------TTTCTTCCEEECCSSC-CCCBCTT-TTTTCTTCCEEECCSS-CCSBCCSSC
T ss_pred             CCCCeEEECCCC-cCCEeChhh-------hccCCCCCEEECCCCc-CCeeCHH-HhcCCCCCCEEECCCC-cCCccChhh
Confidence            356777777775 455555421       1126677777776653 3333211 1345666777777664 344554433


Q ss_pred             cCCCCeeEEEecccccccccc--ccCc------c----chhhhhhhhhhhccCCCccEEEecCCCCceEeccCCCCCccc
Q 037794           84 VSTPKLHEVQVSKKEEDELHH--WEGN------K----LNSTIQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSF  151 (293)
Q Consensus        84 ~~~~~L~~L~l~~c~~~~~~~--~~~~------~----~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~  151 (293)
                      .  ++|+.|.++++.-.....  +.+.      +    .-.........+..+++|+.|+++++. ++.++      ...
T Consensus       120 ~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~------~~~  190 (330)
T 1xku_A          120 P--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIP------QGL  190 (330)
T ss_dssp             C--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCC------SSC
T ss_pred             c--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCC------ccc
Confidence            2  556666665541000000  0000      0    000001122334567778888877743 44333      223


Q ss_pred             CCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceecc
Q 037794          152 FNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCN  231 (293)
Q Consensus       152 l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~  231 (293)
                      +++|++|+++++. +..+ +...+.++++|++|++.++ .++.++. ..+.        .+++|++|++.++ .++.++ 
T Consensus       191 ~~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~~--------~l~~L~~L~L~~N-~l~~lp-  256 (330)
T 1xku_A          191 PPSLTELHLDGNK-ITKV-DAASLKGLNNLAKLGLSFN-SISAVDN-GSLA--------NTPHLRELHLNNN-KLVKVP-  256 (330)
T ss_dssp             CTTCSEEECTTSC-CCEE-CTGGGTTCTTCCEEECCSS-CCCEECT-TTGG--------GSTTCCEEECCSS-CCSSCC-
T ss_pred             cccCCEEECCCCc-CCcc-CHHHhcCCCCCCEEECCCC-cCceeCh-hhcc--------CCCCCCEEECCCC-cCccCC-
Confidence            3788888888876 4433 3344778888999988884 3444431 1121        2388999999886 566554 


Q ss_pred             CCCccccCCCcceEeeecCCCcccc
Q 037794          232 FTGNIIEMPMLWSLTIENCPDMETF  256 (293)
Q Consensus       232 ~~~~~~~l~~L~~L~i~~C~~L~~l  256 (293)
                        ..+..+++|++|+++++ +++.+
T Consensus       257 --~~l~~l~~L~~L~l~~N-~i~~~  278 (330)
T 1xku_A          257 --GGLADHKYIQVVYLHNN-NISAI  278 (330)
T ss_dssp             --TTTTTCSSCCEEECCSS-CCCCC
T ss_pred             --hhhccCCCcCEEECCCC-cCCcc
Confidence              56778889999999987 58777

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.57  E-value=1e-13  Score=126.60  Aligned_cols=40  Identities=15%  Similarity=0.336  Sum_probs=19.8

Q ss_pred             CcccEEecCCCCCCceeccCCCccccCCCcceEeeecCCCcccc
Q 037794          213 PRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETF  256 (293)
Q Consensus       213 ~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l  256 (293)
                      ++|++|+++++ .++.+..  ..+..+++|++|+++++ +++.+
T Consensus       347 ~~L~~L~Ls~N-~l~~~~~--~~~~~l~~L~~L~L~~N-~l~~~  386 (455)
T 3v47_A          347 DKLEVLDLSYN-HIRALGD--QSFLGLPNLKELALDTN-QLKSV  386 (455)
T ss_dssp             TTCCEEECCSS-CCCEECT--TTTTTCTTCCEEECCSS-CCSCC
T ss_pred             ccCCEEECCCC-cccccCh--hhccccccccEEECCCC-ccccC
Confidence            55555555553 3333322  34445555555555554 45554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.57  E-value=1.1e-13  Score=126.02  Aligned_cols=204  Identities=17%  Similarity=0.195  Sum_probs=127.0

Q ss_pred             CCCCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCcccccc
Q 037794            2 GIPNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQ   81 (293)
Q Consensus         2 g~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~   81 (293)
                      +.+++|++|+++++ .+..++...       ...+++|++|+++++ .+..++.. ....+++|++|+++++. ++.+|.
T Consensus        85 ~~l~~L~~L~Ls~n-~i~~i~~~~-------~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~L~~N~-i~~~~~  153 (440)
T 3zyj_A           85 KHLRHLEILQLSRN-HIRTIEIGA-------FNGLANLNTLELFDN-RLTTIPNG-AFVYLSKLKELWLRNNP-IESIPS  153 (440)
T ss_dssp             SSCSSCCEEECCSS-CCCEECGGG-------GTTCSSCCEEECCSS-CCSSCCTT-TSCSCSSCCEEECCSCC-CCEECT
T ss_pred             hCCCCCCEEECCCC-cCCccChhh-------ccCCccCCEEECCCC-cCCeeCHh-HhhccccCceeeCCCCc-ccccCH
Confidence            56778888888876 455555432       122778888888776 34555432 24467788888888753 555543


Q ss_pred             -CccCCCCeeEEEeccccccccccccCccchhhhhhhhh-hhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEE
Q 037794           82 -GIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYE-EMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLV  159 (293)
Q Consensus        82 -~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~  159 (293)
                       .+..+++|+.|++++|.              .+..+.. .+..+++|+.|+++++. ++.++.     +..+++|++|+
T Consensus       154 ~~~~~l~~L~~L~l~~~~--------------~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~-----~~~l~~L~~L~  213 (440)
T 3zyj_A          154 YAFNRIPSLRRLDLGELK--------------RLSYISEGAFEGLSNLRYLNLAMCN-LREIPN-----LTPLIKLDELD  213 (440)
T ss_dssp             TTTTTCTTCCEEECCCCT--------------TCCEECTTTTTTCSSCCEEECTTSC-CSSCCC-----CTTCSSCCEEE
T ss_pred             HHhhhCcccCEeCCCCCC--------------CcceeCcchhhcccccCeecCCCCc-Cccccc-----cCCCcccCEEE
Confidence             45677888888887651              1111111 23567788888887753 444431     44667888888


Q ss_pred             eccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceeccCCCccccC
Q 037794          160 VDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEM  239 (293)
Q Consensus       160 i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l  239 (293)
                      ++++. +..+ +...+.++++|+.|++.+ ..++.+.. ..+.        .+++|++|+++++ .++.++.  ..+..+
T Consensus       214 Ls~N~-l~~~-~~~~~~~l~~L~~L~L~~-n~l~~~~~-~~~~--------~l~~L~~L~L~~N-~l~~~~~--~~~~~l  278 (440)
T 3zyj_A          214 LSGNH-LSAI-RPGSFQGLMHLQKLWMIQ-SQIQVIER-NAFD--------NLQSLVEINLAHN-NLTLLPH--DLFTPL  278 (440)
T ss_dssp             CTTSC-CCEE-CTTTTTTCTTCCEEECTT-CCCCEECT-TSST--------TCTTCCEEECTTS-CCCCCCT--TTTSSC
T ss_pred             CCCCc-cCcc-ChhhhccCccCCEEECCC-CceeEECh-hhhc--------CCCCCCEEECCCC-CCCccCh--hHhccc
Confidence            88774 4443 334477788888888887 34554432 1111        2378888888874 5666554  455677


Q ss_pred             CCcceEeeecCC
Q 037794          240 PMLWSLTIENCP  251 (293)
Q Consensus       240 ~~L~~L~i~~C~  251 (293)
                      ++|+.|+++++|
T Consensus       279 ~~L~~L~L~~Np  290 (440)
T 3zyj_A          279 HHLERIHLHHNP  290 (440)
T ss_dssp             TTCCEEECCSSC
T ss_pred             cCCCEEEcCCCC
Confidence            888888887643

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.56  E-value=1.6e-13  Score=125.23  Aligned_cols=61  Identities=15%  Similarity=0.223  Sum_probs=27.4

Q ss_pred             ccccceeeccccccccccccccccccCCCcceEeEcCCCCcccc-ccC-ccCCCCeeEEEeccc
Q 037794           36 FNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTF-SQG-IVSTPKLHEVQVSKK   97 (293)
Q Consensus        36 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l-p~~-~~~~~~L~~L~l~~c   97 (293)
                      +++|++|+++++..-...+.......+++|++|+++++. +..+ |.. +..+++|+.|+++++
T Consensus       102 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n  164 (455)
T 3v47_A          102 LANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFN  164 (455)
T ss_dssp             CTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTC
T ss_pred             cccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCC
Confidence            455555555554321112222223345556666665543 2222 322 445566666666554

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.56  E-value=5.5e-14  Score=121.22  Aligned_cols=200  Identities=18%  Similarity=0.192  Sum_probs=148.5

Q ss_pred             CCCCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCcccccc
Q 037794            2 GIPNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQ   81 (293)
Q Consensus         2 g~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~   81 (293)
                      +.++++++++++++ .++.+|...          .++++.|+++++. +..+... ....+++|+.|+++++ .++.++.
T Consensus         7 ~~l~~l~~l~~~~~-~l~~ip~~~----------~~~l~~L~L~~N~-l~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~   72 (290)
T 1p9a_G            7 SKVASHLEVNCDKR-NLTALPPDL----------PKDTTILHLSENL-LYTFSLA-TLMPYTRLTQLNLDRA-ELTKLQV   72 (290)
T ss_dssp             ECSTTCCEEECTTS-CCSSCCSCC----------CTTCCEEECTTSC-CSEEEGG-GGTTCTTCCEEECTTS-CCCEEEC
T ss_pred             cccCCccEEECCCC-CCCcCCCCC----------CCCCCEEEcCCCc-CCccCHH-HhhcCCCCCEEECCCC-ccCcccC
Confidence            56789999999885 778887643          5689999999875 4444332 2557899999999986 5777765


Q ss_pred             CccCCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEec
Q 037794           82 GIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVD  161 (293)
Q Consensus        82 ~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~  161 (293)
                      . ..+++|+.|+++++               .+..++..+..+++|+.|+++++ .++.++.+.   +..+++|++|+++
T Consensus        73 ~-~~l~~L~~L~Ls~N---------------~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~---~~~l~~L~~L~L~  132 (290)
T 1p9a_G           73 D-GTLPVLGTLDLSHN---------------QLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGA---LRGLGELQELYLK  132 (290)
T ss_dssp             C-SCCTTCCEEECCSS---------------CCSSCCCCTTTCTTCCEEECCSS-CCCCCCSST---TTTCTTCCEEECT
T ss_pred             C-CCCCcCCEEECCCC---------------cCCcCchhhccCCCCCEEECCCC-cCcccCHHH---HcCCCCCCEEECC
Confidence            4 78899999999975               22344445577899999999985 466665444   5678999999999


Q ss_pred             cCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceeccCCCccccCCC
Q 037794          162 DCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPM  241 (293)
Q Consensus       162 ~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~  241 (293)
                      ++. ++.+ +...+..+++|+.|++.+ ..++.++. ..+.        .+++|+.|++.+. .++.++   ..+...++
T Consensus       133 ~N~-l~~~-~~~~~~~l~~L~~L~L~~-N~l~~l~~-~~~~--------~l~~L~~L~L~~N-~l~~ip---~~~~~~~~  196 (290)
T 1p9a_G          133 GNE-LKTL-PPGLLTPTPKLEKLSLAN-NNLTELPA-GLLN--------GLENLDTLLLQEN-SLYTIP---KGFFGSHL  196 (290)
T ss_dssp             TSC-CCCC-CTTTTTTCTTCCEEECTT-SCCSCCCT-TTTT--------TCTTCCEEECCSS-CCCCCC---TTTTTTCC
T ss_pred             CCC-CCcc-ChhhcccccCCCEEECCC-CcCCccCH-HHhc--------CcCCCCEEECCCC-cCCccC---hhhccccc
Confidence            885 4443 666688899999999998 45666652 1111        2389999999984 677765   56677789


Q ss_pred             cceEeeecCC
Q 037794          242 LWSLTIENCP  251 (293)
Q Consensus       242 L~~L~i~~C~  251 (293)
                      |+.|.+++.|
T Consensus       197 L~~l~L~~Np  206 (290)
T 1p9a_G          197 LPFAFLHGNP  206 (290)
T ss_dssp             CSEEECCSCC
T ss_pred             CCeEEeCCCC
Confidence            9999998643

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.55  E-value=2.1e-14  Score=136.91  Aligned_cols=63  Identities=16%  Similarity=0.325  Sum_probs=51.0

Q ss_pred             ccccccccceeeccccccccc------------------cccccccc--cCCCcceEeEcCCCCccccccCccCCCCeeE
Q 037794           32 NRIAFNELKFLELDDLPRLTS------------------FCLENYTL--EFPSLERVFVTRCPNMKTFSQGIVSTPKLHE   91 (293)
Q Consensus        32 ~~~~~~~L~~L~l~~~~~l~~------------------~~~~~~~~--~~~~L~~L~i~~c~~l~~lp~~~~~~~~L~~   91 (293)
                      .+..+++|++|+++++. +..                  +|..  ..  ++++|++|++++|.....+|..+..+++|+.
T Consensus       201 ~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~--l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  277 (636)
T 4eco_A          201 AVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTED--LKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL  277 (636)
T ss_dssp             GGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSC--CCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred             HHhcccCCCEEECcCCc-cccccccccccccccchhcccCchh--hhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence            34458899999998876 554                  5554  44  7899999999998877788888889999999


Q ss_pred             EEeccc
Q 037794           92 VQVSKK   97 (293)
Q Consensus        92 L~l~~c   97 (293)
                      |+++++
T Consensus       278 L~Ls~n  283 (636)
T 4eco_A          278 INVACN  283 (636)
T ss_dssp             EECTTC
T ss_pred             EECcCC
Confidence            999887

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.55  E-value=1.9e-14  Score=136.09  Aligned_cols=218  Identities=14%  Similarity=0.106  Sum_probs=130.4

Q ss_pred             CCCCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCcccccc
Q 037794            2 GIPNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQ   81 (293)
Q Consensus         2 g~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~   81 (293)
                      +.+++|++|+++++ .++.++ ...        .+++|++|+++++.. ..++.   . .+++|++|++++|..+..+  
T Consensus       282 ~~l~~L~~L~l~~~-~~~~l~-~l~--------~~~~L~~L~l~~n~l-~~lp~---~-~l~~L~~L~l~~n~~~~~~--  344 (606)
T 3vq2_A          282 HCLANVSAMSLAGV-SIKYLE-DVP--------KHFKWQSLSIIRCQL-KQFPT---L-DLPFLKSLTLTMNKGSISF--  344 (606)
T ss_dssp             GGGTTCSEEEEESC-CCCCCC-CCC--------TTCCCSEEEEESCCC-SSCCC---C-CCSSCCEEEEESCSSCEEC--
T ss_pred             ccCCCCCEEEecCc-cchhhh-hcc--------ccccCCEEEcccccC-ccccc---C-CCCccceeeccCCcCccch--
Confidence            45789999999987 456666 222        388999999999875 66762   2 7899999999998666654  


Q ss_pred             CccCCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCCCCceEeccCC----------------
Q 037794           82 GIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQ----------------  145 (293)
Q Consensus        82 ~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~----------------  145 (293)
                      ....+++|+.|+++++.- ...           ...+.....+++|+.|+++++. +..++ ..                
T Consensus       345 ~~~~l~~L~~L~ls~n~l-~~~-----------~~~~~~~~~~~~L~~L~L~~n~-l~~~~-~~~~~l~~L~~L~l~~n~  410 (606)
T 3vq2_A          345 KKVALPSLSYLDLSRNAL-SFS-----------GCCSYSDLGTNSLRHLDLSFNG-AIIMS-ANFMGLEELQHLDFQHST  410 (606)
T ss_dssp             CCCCCTTCCEEECCSSCE-EEE-----------EECCHHHHCCSCCCEEECCSCS-EEEEC-CCCTTCTTCCEEECTTSE
T ss_pred             hhccCCCCCEEECcCCcc-CCC-----------cchhhhhccCCcccEeECCCCc-cccch-hhccCCCCCCeeECCCCc
Confidence            355789999999987611 100           0011222344455555554432 33322 11                


Q ss_pred             -----C-CCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEe
Q 037794          146 -----A-LPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILR  219 (293)
Q Consensus       146 -----~-~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~  219 (293)
                           + ..+..+++|++|++++|..... .|. .+.++++|++|++.+|.--..+.. ..+.        .+++|++|+
T Consensus       411 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~-~~~~l~~L~~L~l~~n~l~~~~~~-~~~~--------~l~~L~~L~  479 (606)
T 3vq2_A          411 LKRVTEFSAFLSLEKLLYLDISYTNTKID-FDG-IFLGLTSLNTLKMAGNSFKDNTLS-NVFA--------NTTNLTFLD  479 (606)
T ss_dssp             EESTTTTTTTTTCTTCCEEECTTSCCEEC-CTT-TTTTCTTCCEEECTTCEEGGGEEC-SCCT--------TCTTCCEEE
T ss_pred             cCCccChhhhhccccCCEEECcCCCCCcc-chh-hhcCCCCCCEEECCCCcCCCcchH-Hhhc--------cCCCCCEEE
Confidence                 0 0123455566666665543332 122 255566666666666432111110 1111        238999999


Q ss_pred             cCCCCCCceeccCCCccccCCCcceEeeecCCCccccccccchhhc
Q 037794          220 LIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVLHVT  265 (293)
Q Consensus       220 l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~p~~l~~l~  265 (293)
                      ++++ .++.+..  ..+..+++|++|++++| +++.+.|..++.+.
T Consensus       480 Ls~n-~l~~~~~--~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~  521 (606)
T 3vq2_A          480 LSKC-QLEQISW--GVFDTLHRLQLLNMSHN-NLLFLDSSHYNQLY  521 (606)
T ss_dssp             CTTS-CCCEECT--TTTTTCTTCCEEECCSS-CCSCEEGGGTTTCT
T ss_pred             CCCC-cCCccCh--hhhcccccCCEEECCCC-cCCCcCHHHccCCC
Confidence            9987 5666543  56788899999999998 57776565555443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.55  E-value=2e-13  Score=124.77  Aligned_cols=205  Identities=17%  Similarity=0.165  Sum_probs=149.0

Q ss_pred             CCCCCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccc
Q 037794            1 VGIPNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFS   80 (293)
Q Consensus         1 ~g~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp   80 (293)
                      ++.+++|++|+++++ .++.++...       ...+++|++|+++++. +..++.. ....+++|++|+++++. ++.+|
T Consensus        95 ~~~l~~L~~L~Ls~n-~i~~~~~~~-------~~~l~~L~~L~L~~n~-l~~~~~~-~~~~l~~L~~L~L~~N~-l~~~~  163 (452)
T 3zyi_A           95 FRHLHHLEVLQLGRN-SIRQIEVGA-------FNGLASLNTLELFDNW-LTVIPSG-AFEYLSKLRELWLRNNP-IESIP  163 (452)
T ss_dssp             TTTCTTCCEEECCSS-CCCEECTTT-------TTTCTTCCEEECCSSC-CSBCCTT-TSSSCTTCCEEECCSCC-CCEEC
T ss_pred             cCCCCCCCEEECCCC-ccCCcChhh-------ccCcccCCEEECCCCc-CCccChh-hhcccCCCCEEECCCCC-cceeC
Confidence            367899999999997 667666432       2238999999999874 5555543 24578999999999874 66665


Q ss_pred             c-CccCCCCeeEEEeccccccccccccCccchhhhhhhhh-hhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEE
Q 037794           81 Q-GIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYE-EMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKL  158 (293)
Q Consensus        81 ~-~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L  158 (293)
                      . .+..+++|+.|++++|.              .+..+.. .+..+++|+.|+++++. ++.++.     +..+++|++|
T Consensus       164 ~~~~~~l~~L~~L~l~~~~--------------~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~-----~~~l~~L~~L  223 (452)
T 3zyi_A          164 SYAFNRVPSLMRLDLGELK--------------KLEYISEGAFEGLFNLKYLNLGMCN-IKDMPN-----LTPLVGLEEL  223 (452)
T ss_dssp             TTTTTTCTTCCEEECCCCT--------------TCCEECTTTTTTCTTCCEEECTTSC-CSSCCC-----CTTCTTCCEE
T ss_pred             HhHHhcCCcccEEeCCCCC--------------CccccChhhccCCCCCCEEECCCCc-cccccc-----ccccccccEE
Confidence            4 56789999999999762              2222222 24678999999999864 554431     4577999999


Q ss_pred             EeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceeccCCCcccc
Q 037794          159 VVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIE  238 (293)
Q Consensus       159 ~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~  238 (293)
                      +++++... .+ +...+.++++|+.|++.++ .++.+.. ..+.        .+++|++|++.++ .++.++.  ..+..
T Consensus       224 ~Ls~N~l~-~~-~~~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~--------~l~~L~~L~L~~N-~l~~~~~--~~~~~  288 (452)
T 3zyi_A          224 EMSGNHFP-EI-RPGSFHGLSSLKKLWVMNS-QVSLIER-NAFD--------GLASLVELNLAHN-NLSSLPH--DLFTP  288 (452)
T ss_dssp             ECTTSCCS-EE-CGGGGTTCTTCCEEECTTS-CCCEECT-TTTT--------TCTTCCEEECCSS-CCSCCCT--TSSTT
T ss_pred             ECcCCcCc-cc-CcccccCccCCCEEEeCCC-cCceECH-HHhc--------CCCCCCEEECCCC-cCCccCh--HHhcc
Confidence            99998644 43 4455889999999999994 4555532 2222        2389999999986 6777654  55678


Q ss_pred             CCCcceEeeecCC
Q 037794          239 MPMLWSLTIENCP  251 (293)
Q Consensus       239 l~~L~~L~i~~C~  251 (293)
                      +++|++|+++++|
T Consensus       289 l~~L~~L~L~~Np  301 (452)
T 3zyi_A          289 LRYLVELHLHHNP  301 (452)
T ss_dssp             CTTCCEEECCSSC
T ss_pred             ccCCCEEEccCCC
Confidence            9999999998854

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.53  E-value=2e-14  Score=125.22  Aligned_cols=213  Identities=13%  Similarity=0.053  Sum_probs=149.7

Q ss_pred             CCCCCcceEeccccccce-EeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccc
Q 037794            2 GIPNSLVNLNVSYCEKIE-EIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFS   80 (293)
Q Consensus         2 g~l~~L~~L~l~~c~~l~-~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp   80 (293)
                      +.+++|++|+++++..+. .+|...+        .+++|++|+++++..-...+..  ...+++|++|+++++.--..+|
T Consensus        73 ~~l~~L~~L~L~~~n~l~~~~p~~l~--------~l~~L~~L~Ls~n~l~~~~p~~--~~~l~~L~~L~Ls~N~l~~~~p  142 (313)
T 1ogq_A           73 ANLPYLNFLYIGGINNLVGPIPPAIA--------KLTQLHYLYITHTNVSGAIPDF--LSQIKTLVTLDFSYNALSGTLP  142 (313)
T ss_dssp             GGCTTCSEEEEEEETTEESCCCGGGG--------GCTTCSEEEEEEECCEEECCGG--GGGCTTCCEEECCSSEEESCCC
T ss_pred             hCCCCCCeeeCCCCCcccccCChhHh--------cCCCCCEEECcCCeeCCcCCHH--HhCCCCCCEEeCCCCccCCcCC
Confidence            568999999999644555 4554333        3999999999987544345543  5689999999999975444778


Q ss_pred             cCccCCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCC-CccEEEecCCCCceEeccCCCCCcccCCCccEEE
Q 037794           81 QGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFR-DIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLV  159 (293)
Q Consensus        81 ~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~  159 (293)
                      ..+..+++|+.|+++++              .....++..+..++ +|+.|+++++. +.......   +..+. |++|+
T Consensus       143 ~~~~~l~~L~~L~L~~N--------------~l~~~~p~~l~~l~~~L~~L~L~~N~-l~~~~~~~---~~~l~-L~~L~  203 (313)
T 1ogq_A          143 PSISSLPNLVGITFDGN--------------RISGAIPDSYGSFSKLFTSMTISRNR-LTGKIPPT---FANLN-LAFVD  203 (313)
T ss_dssp             GGGGGCTTCCEEECCSS--------------CCEEECCGGGGCCCTTCCEEECCSSE-EEEECCGG---GGGCC-CSEEE
T ss_pred             hHHhcCCCCCeEECcCC--------------cccCcCCHHHhhhhhcCcEEECcCCe-eeccCChH---HhCCc-ccEEE
Confidence            88889999999999976              11123445556676 99999999864 44322222   34444 99999


Q ss_pred             eccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceeccCCCccccC
Q 037794          160 VDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEM  239 (293)
Q Consensus       160 i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l  239 (293)
                      ++++.... . +...+..+++|+.|++.++. ++..+.  ...        .+++|++|++.++ .++..  .|..+..+
T Consensus       204 Ls~N~l~~-~-~~~~~~~l~~L~~L~L~~N~-l~~~~~--~~~--------~l~~L~~L~Ls~N-~l~~~--~p~~l~~l  267 (313)
T 1ogq_A          204 LSRNMLEG-D-ASVLFGSDKNTQKIHLAKNS-LAFDLG--KVG--------LSKNLNGLDLRNN-RIYGT--LPQGLTQL  267 (313)
T ss_dssp             CCSSEEEE-C-CGGGCCTTSCCSEEECCSSE-ECCBGG--GCC--------CCTTCCEEECCSS-CCEEC--CCGGGGGC
T ss_pred             CcCCcccC-c-CCHHHhcCCCCCEEECCCCc-eeeecC--ccc--------ccCCCCEEECcCC-cccCc--CChHHhcC
Confidence            99886443 3 33457889999999999954 332221  111        3489999999986 45532  22678899


Q ss_pred             CCcceEeeecCCCcccccccc
Q 037794          240 PMLWSLTIENCPDMETFISNS  260 (293)
Q Consensus       240 ~~L~~L~i~~C~~L~~l~p~~  260 (293)
                      ++|++|+++++ +++..+|..
T Consensus       268 ~~L~~L~Ls~N-~l~~~ip~~  287 (313)
T 1ogq_A          268 KFLHSLNVSFN-NLCGEIPQG  287 (313)
T ss_dssp             TTCCEEECCSS-EEEEECCCS
T ss_pred             cCCCEEECcCC-cccccCCCC
Confidence            99999999998 576443754

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.53  E-value=6e-13  Score=119.24  Aligned_cols=91  Identities=14%  Similarity=0.084  Sum_probs=52.1

Q ss_pred             CCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceeccC
Q 037794          153 NNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNF  232 (293)
Q Consensus       153 ~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~  232 (293)
                      ++|++|+++++.... .   ..+..+++|++|++.++ .++.+.. ..+.        .+++|++|++.++ .++.++  
T Consensus       226 ~~L~~L~l~~n~l~~-~---~~l~~l~~L~~L~Ls~n-~l~~~~~-~~~~--------~l~~L~~L~L~~n-~l~~~~--  288 (390)
T 3o6n_A          226 VELTILKLQHNNLTD-T---AWLLNYPGLVEVDLSYN-ELEKIMY-HPFV--------KMQRLERLYISNN-RLVALN--  288 (390)
T ss_dssp             SSCCEEECCSSCCCC-C---GGGGGCTTCSEEECCSS-CCCEEES-GGGT--------TCSSCCEEECCSS-CCCEEE--
T ss_pred             ccccEEECCCCCCcc-c---HHHcCCCCccEEECCCC-cCCCcCh-hHcc--------ccccCCEEECCCC-cCcccC--
Confidence            566666666664332 1   23566777777777774 3433321 1111        2377777777774 555554  


Q ss_pred             CCccccCCCcceEeeecCCCccccccccchh
Q 037794          233 TGNIIEMPMLWSLTIENCPDMETFISNSVLH  263 (293)
Q Consensus       233 ~~~~~~l~~L~~L~i~~C~~L~~l~p~~l~~  263 (293)
                       .....+++|++|++++| +++.+ |..++.
T Consensus       289 -~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~  316 (390)
T 3o6n_A          289 -LYGQPIPTLKVLDLSHN-HLLHV-ERNQPQ  316 (390)
T ss_dssp             -CSSSCCTTCCEEECCSS-CCCCC-GGGHHH
T ss_pred             -cccCCCCCCCEEECCCC-cceec-Cccccc
Confidence             33356677777777776 56666 654433

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.52  E-value=1.4e-13  Score=117.44  Aligned_cols=214  Identities=16%  Similarity=0.175  Sum_probs=129.3

Q ss_pred             CCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccc-cCc
Q 037794            5 NSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFS-QGI   83 (293)
Q Consensus         5 ~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp-~~~   83 (293)
                      ++|++|+++++ .++.++...       ...+++|++|+++++ .+..++.. ....+++|+.|+++++. ++.++ ..+
T Consensus        28 ~~l~~L~ls~n-~l~~~~~~~-------~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~L~~n~-l~~~~~~~~   96 (276)
T 2z62_A           28 FSTKNLDLSFN-PLRHLGSYS-------FFSFPELQVLDLSRC-EIQTIEDG-AYQSLSHLSTLILTGNP-IQSLALGAF   96 (276)
T ss_dssp             TTCCEEECTTC-CCCEECTTT-------TTTCTTCSEEECTTC-CCCEECTT-TTTTCTTCCEEECTTCC-CCEECTTTT
T ss_pred             CCccEEECCCC-cccccCHhH-------hccccCCcEEECCCC-cCCccCHH-HccCCcCCCEEECCCCc-cCccChhhh
Confidence            45788888776 566665422       112778888888776 34444432 13467788888888764 44433 456


Q ss_pred             cCCCCeeEEEeccccccccccccCccchhhhhhhhh-hhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEecc
Q 037794           84 VSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYE-EMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDD  162 (293)
Q Consensus        84 ~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~  162 (293)
                      ..+++|+.|.+.++.               +..+.. .+..+++|+.|+++++. ++.+...  ..+..+++|++|++++
T Consensus        97 ~~l~~L~~L~l~~n~---------------l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~--~~~~~l~~L~~L~Ls~  158 (276)
T 2z62_A           97 SGLSSLQKLVAVETN---------------LASLENFPIGHLKTLKELNVAHNL-IQSFKLP--EYFSNLTNLEHLDLSS  158 (276)
T ss_dssp             TTCTTCCEEECTTSC---------------CCCSTTCCCTTCTTCCEEECCSSC-CCCCCCC--GGGGGCTTCCEEECCS
T ss_pred             cCCccccEEECCCCC---------------ccccCchhcccCCCCCEEECcCCc-cceecCc--hhhccCCCCCEEECCC
Confidence            777888888887651               111111 23567788888887753 3332100  1145667888888887


Q ss_pred             CCCCCccCChhHHhccCCCC----eEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceeccCCCcccc
Q 037794          163 CANMSSAIPANLLRCLSNLR----WLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIE  238 (293)
Q Consensus       163 c~~l~~~~p~~~~~~l~~L~----~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~  238 (293)
                      +... .+ +...+..+++|+    +|++.+ ..++.++.  +..        ...+|++|++.++ .++.++.  ..+..
T Consensus       159 N~l~-~~-~~~~~~~l~~L~~l~l~L~ls~-n~l~~~~~--~~~--------~~~~L~~L~L~~n-~l~~~~~--~~~~~  222 (276)
T 2z62_A          159 NKIQ-SI-YCTDLRVLHQMPLLNLSLDLSL-NPMNFIQP--GAF--------KEIRLKELALDTN-QLKSVPD--GIFDR  222 (276)
T ss_dssp             SCCC-EE-CGGGGHHHHTCTTCCEEEECCS-SCCCEECT--TSS--------CSCCEEEEECCSS-CCSCCCT--TTTTT
T ss_pred             CCCC-cC-CHHHhhhhhhccccceeeecCC-CcccccCc--ccc--------CCCcccEEECCCC-ceeecCH--hHhcc
Confidence            7533 32 433455556665    677776 34544431  111        1258999999986 4777654  45678


Q ss_pred             CCCcceEeee------cCCCccccccccchhh
Q 037794          239 MPMLWSLTIE------NCPDMETFISNSVLHV  264 (293)
Q Consensus       239 l~~L~~L~i~------~C~~L~~l~p~~l~~l  264 (293)
                      +++|++|+++      +|++++.+ ..++.+.
T Consensus       223 l~~L~~L~l~~N~~~c~c~~l~~l-~~~~~~~  253 (276)
T 2z62_A          223 LTSLQKIWLHTNPWDCSCPRIDYL-SRWLNKN  253 (276)
T ss_dssp             CCSCCEEECCSSCBCCCTTTTHHH-HHHHHHT
T ss_pred             cccccEEEccCCcccccCCchHHH-HHHHHhc
Confidence            9999999998      46666555 5555443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.52  E-value=1.4e-14  Score=138.19  Aligned_cols=221  Identities=10%  Similarity=0.044  Sum_probs=142.2

Q ss_pred             CCCCCCcceEeccccccceE------------------eccccccccccccccccccceeeccccccccccccccccccC
Q 037794            1 VGIPNSLVNLNVSYCEKIEE------------------IIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEF   62 (293)
Q Consensus         1 ~g~l~~L~~L~l~~c~~l~~------------------i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~   62 (293)
                      ++++++|++|+++++. ++.                  +|...+-.      .+++|++|+++++.....+|..  ..++
T Consensus       202 l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~------~l~~L~~L~L~~n~l~~~~p~~--l~~l  272 (636)
T 4eco_A          202 VMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWD------NLKDLTDVEVYNCPNLTKLPTF--LKAL  272 (636)
T ss_dssp             GGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGG------GCTTCCEEEEECCTTCSSCCTT--TTTC
T ss_pred             HhcccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhc------ccCCCCEEEecCCcCCccChHH--HhcC
Confidence            3678899999999985 555                  55544300      3899999999998766666644  5688


Q ss_pred             CCcceEeEcCCCCcc--ccccCccCC------CCeeEEEeccccccccccccCccchhhhhhhhh--hhccCCCccEEEe
Q 037794           63 PSLERVFVTRCPNMK--TFSQGIVST------PKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYE--EMIGFRDIERLQL  132 (293)
Q Consensus        63 ~~L~~L~i~~c~~l~--~lp~~~~~~------~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~L~~L~l  132 (293)
                      ++|+.|++++|..++  .+|..+..+      ++|+.|+++++               .+..++.  .+..+++|+.|++
T Consensus       273 ~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n---------------~l~~ip~~~~l~~l~~L~~L~L  337 (636)
T 4eco_A          273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN---------------NLKTFPVETSLQKMKKLGMLEC  337 (636)
T ss_dssp             SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS---------------CCSSCCCHHHHTTCTTCCEEEC
T ss_pred             CCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC---------------cCCccCchhhhccCCCCCEEeC
Confidence            999999999987455  477666554      89999999876               1124444  5677888888888


Q ss_pred             cCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCC-CCeEEecCccccccccccccccc--------
Q 037794          133 SHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSN-LRWLEVRNCDSLEEVLHLEELNA--------  203 (293)
Q Consensus       133 ~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~-L~~L~i~~c~~l~~i~~~~~~~~--------  203 (293)
                      +++.--..++  .   +..+++|++|+++++... . +|.. +.++++ |++|++.++. ++.++..-+...        
T Consensus       338 ~~N~l~g~ip--~---~~~l~~L~~L~L~~N~l~-~-lp~~-l~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~  408 (636)
T 4eco_A          338 LYNQLEGKLP--A---FGSEIKLASLNLAYNQIT-E-IPAN-FCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAID  408 (636)
T ss_dssp             CSCCCEEECC--C---CEEEEEESEEECCSSEEE-E-CCTT-SEEECTTCCEEECCSSC-CSSCCSCCCTTCSSCEEEEE
T ss_pred             cCCcCccchh--h---hCCCCCCCEEECCCCccc-c-ccHh-hhhhcccCcEEEccCCc-CcccchhhhhcccCccCEEE
Confidence            8755322554  2   445677888888777533 3 3554 666777 8888877743 444442110000        


Q ss_pred             -----cccc-CCC---------CCCcccEEecCCCCCCceeccCCCccccCCCcceEeeecCCCccccccc
Q 037794          204 -----DKEH-IGP---------LFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISN  259 (293)
Q Consensus       204 -----~~~~-~~~---------~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~p~  259 (293)
                           ..+. +..         ..++|++|++.++ .++.++.  .....+++|++|++++| +++.+ |.
T Consensus       409 Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~--~~~~~l~~L~~L~Ls~N-~l~~i-~~  474 (636)
T 4eco_A          409 FSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPK--ELFSTGSPLSSINLMGN-MLTEI-PK  474 (636)
T ss_dssp             CCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSS-CCCSCCT--HHHHTTCCCSEEECCSS-CCSBC-CS
T ss_pred             CcCCcCCCcchhhhcccccccccCCCCCEEECcCC-ccCcCCH--HHHccCCCCCEEECCCC-CCCCc-CH
Confidence                 0000 000         1247888888775 4555542  23345888999999887 67777 64

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.52  E-value=3e-14  Score=126.05  Aligned_cols=167  Identities=14%  Similarity=0.102  Sum_probs=77.4

Q ss_pred             CCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccC-c
Q 037794            5 NSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQG-I   83 (293)
Q Consensus         5 ~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~-~   83 (293)
                      ++|++|+++++ .++.++...       ...+++|++|+++++ .+..+... ....+++|++|+++++ .++.+|.. +
T Consensus        52 ~~L~~L~l~~n-~i~~~~~~~-------~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~Ls~n-~l~~~~~~~~  120 (353)
T 2z80_A           52 EAVKSLDLSNN-RITYISNSD-------LQRCVNLQALVLTSN-GINTIEED-SFSSLGSLEHLDLSYN-YLSNLSSSWF  120 (353)
T ss_dssp             TTCCEEECTTS-CCCEECTTT-------TTTCTTCCEEECTTS-CCCEECTT-TTTTCTTCCEEECCSS-CCSSCCHHHH
T ss_pred             ccCcEEECCCC-cCcccCHHH-------hccCCCCCEEECCCC-ccCccCHh-hcCCCCCCCEEECCCC-cCCcCCHhHh
Confidence            46777777765 455555422       112666666666665 23333221 1335566666666654 34444433 4


Q ss_pred             cCCCCeeEEEeccccccccccc-cCc---------c--chhhhhhh-hhhhccCCCccEEEecCCCCceEeccCCCCCcc
Q 037794           84 VSTPKLHEVQVSKKEEDELHHW-EGN---------K--LNSTIQKR-YEEMIGFRDIERLQLSHFPRLKEIWHGQALPVS  150 (293)
Q Consensus        84 ~~~~~L~~L~l~~c~~~~~~~~-~~~---------~--~~~~~~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~  150 (293)
                      ..+++|+.|+++++. ...... ...         +  -+..+..+ ...+..+++|+.|+++++. +..+....   +.
T Consensus       121 ~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~---l~  195 (353)
T 2z80_A          121 KPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD-LQSYEPKS---LK  195 (353)
T ss_dssp             TTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT-CCEECTTT---TT
T ss_pred             CCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC-cCccCHHH---Hh
Confidence            556666666666541 000000 000         0  00001111 1123345555555555533 33332222   34


Q ss_pred             cCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCc
Q 037794          151 FFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNC  189 (293)
Q Consensus       151 ~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c  189 (293)
                      .+++|++|+++++.. .. ++...+..+++|+.|++.++
T Consensus       196 ~l~~L~~L~l~~n~l-~~-~~~~~~~~~~~L~~L~L~~n  232 (353)
T 2z80_A          196 SIQNVSHLILHMKQH-IL-LLEIFVDVTSSVECLELRDT  232 (353)
T ss_dssp             TCSEEEEEEEECSCS-TT-HHHHHHHHTTTEEEEEEESC
T ss_pred             ccccCCeecCCCCcc-cc-chhhhhhhcccccEEECCCC
Confidence            456666666665542 32 24444455666666666663

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.51  E-value=1.3e-13  Score=119.37  Aligned_cols=221  Identities=15%  Similarity=0.130  Sum_probs=149.1

Q ss_pred             CCCCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccc-
Q 037794            2 GIPNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFS-   80 (293)
Q Consensus         2 g~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp-   80 (293)
                      +.+++|++|+++++ .++.+....     .....+++|++|+++++. +..++..  ...+++|++|+++++ .++.++ 
T Consensus        49 ~~l~~L~~L~L~~n-~l~~~~~~~-----~~~~~~~~L~~L~Ls~n~-i~~l~~~--~~~l~~L~~L~l~~n-~l~~~~~  118 (306)
T 2z66_A           49 DKLTQLTKLSLSSN-GLSFKGCCS-----QSDFGTTSLKYLDLSFNG-VITMSSN--FLGLEQLEHLDFQHS-NLKQMSE  118 (306)
T ss_dssp             TTCTTCSEEECCSS-CCCEEEEEE-----HHHHSCSCCCEEECCSCS-EEEEEEE--EETCTTCCEEECTTS-EEESSTT
T ss_pred             hccccCCEEECCCC-ccCcccCcc-----cccccccccCEEECCCCc-cccChhh--cCCCCCCCEEECCCC-ccccccc
Confidence            57899999999987 454442110     011238999999999874 4445543  557999999999986 455554 


Q ss_pred             -cCccCCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCCCCceE-eccCCCCCcccCCCccEE
Q 037794           81 -QGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRLKE-IWHGQALPVSFFNNLFKL  158 (293)
Q Consensus        81 -~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~-~~~~~~~~~~~l~~L~~L  158 (293)
                       ..+..+++|+.|+++++.              .....+..+..+++|+.|+++++. +.. .....   +..+++|++|
T Consensus       119 ~~~~~~l~~L~~L~l~~n~--------------l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~---~~~l~~L~~L  180 (306)
T 2z66_A          119 FSVFLSLRNLIYLDISHTH--------------TRVAFNGIFNGLSSLEVLKMAGNS-FQENFLPDI---FTELRNLTFL  180 (306)
T ss_dssp             TTTTTTCTTCCEEECTTSC--------------CEECSTTTTTTCTTCCEEECTTCE-EGGGEECSC---CTTCTTCCEE
T ss_pred             chhhhhccCCCEEECCCCc--------------CCccchhhcccCcCCCEEECCCCc-cccccchhH---HhhCcCCCEE
Confidence             356789999999999761              111122334678999999999864 332 22122   5678999999


Q ss_pred             EeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceeccCCCcccc
Q 037794          159 VVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIE  238 (293)
Q Consensus       159 ~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~  238 (293)
                      ++++|.. ..+ +...+..+++|++|++.++ .++.++. ..+.        .+++|++|+++++ .++....  ..+..
T Consensus       181 ~Ls~n~l-~~~-~~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~--------~l~~L~~L~L~~N-~l~~~~~--~~~~~  245 (306)
T 2z66_A          181 DLSQCQL-EQL-SPTAFNSLSSLQVLNMSHN-NFFSLDT-FPYK--------CLNSLQVLDYSLN-HIMTSKK--QELQH  245 (306)
T ss_dssp             ECTTSCC-CEE-CTTTTTTCTTCCEEECTTS-CCSBCCS-GGGT--------TCTTCCEEECTTS-CCCBCSS--SSCCC
T ss_pred             ECCCCCc-CCc-CHHHhcCCCCCCEEECCCC-ccCccCh-hhcc--------CcccCCEeECCCC-CCcccCH--HHHHh
Confidence            9999864 443 3445788999999999995 4555432 1111        2489999999997 4555432  55667


Q ss_pred             CC-CcceEeeecCCCcccc-----ccccchhhcc
Q 037794          239 MP-MLWSLTIENCPDMETF-----ISNSVLHVTT  266 (293)
Q Consensus       239 l~-~L~~L~i~~C~~L~~l-----~p~~l~~l~~  266 (293)
                      ++ +|++|++++++ ++.-     |+.++.....
T Consensus       246 ~~~~L~~L~L~~N~-~~~~c~~~~~~~~l~~~~~  278 (306)
T 2z66_A          246 FPSSLAFLNLTQND-FACTCEHQSFLQWIKDQRQ  278 (306)
T ss_dssp             CCTTCCEEECTTCC-EECSGGGHHHHHHHHHTGG
T ss_pred             hhccCCEEEccCCC-eecccChHHHHHHHHhhhh
Confidence            74 99999999874 4322     3566665554

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.51  E-value=1.8e-13  Score=114.39  Aligned_cols=203  Identities=10%  Similarity=0.058  Sum_probs=149.7

Q ss_pred             CCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCcccccc-Cc
Q 037794            5 NSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQ-GI   83 (293)
Q Consensus         5 ~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~-~~   83 (293)
                      ++|++|+++++ +++.++...-       ..+++|++|+++++..++.++.. ....+++|++|++++|..++.+|. .+
T Consensus        31 ~~l~~L~l~~n-~l~~i~~~~~-------~~l~~L~~L~l~~n~~l~~i~~~-~f~~l~~L~~L~l~~~n~l~~i~~~~f  101 (239)
T 2xwt_C           31 PSTQTLKLIET-HLRTIPSHAF-------SNLPNISRIYVSIDVTLQQLESH-SFYNLSKVTHIEIRNTRNLTYIDPDAL  101 (239)
T ss_dssp             TTCCEEEEESC-CCSEECTTTT-------TTCTTCCEEEEECCSSCCEECTT-TEESCTTCCEEEEEEETTCCEECTTSE
T ss_pred             CcccEEEEeCC-cceEECHHHc-------cCCCCCcEEeCCCCCCcceeCHh-HcCCCcCCcEEECCCCCCeeEcCHHHh
Confidence            47999999996 6788876421       23899999999998767766653 245789999999998778888764 56


Q ss_pred             cCCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCcc---EEEecCCCCceEeccCCCCCcccCCCcc-EEE
Q 037794           84 VSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIE---RLQLSHFPRLKEIWHGQALPVSFFNNLF-KLV  159 (293)
Q Consensus        84 ~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~---~L~l~~~~~l~~~~~~~~~~~~~l~~L~-~L~  159 (293)
                      ..+++|+.|.++++               .+..++. +..+++|+   .|++++++.++.++.+.   +..+++|+ +|+
T Consensus       102 ~~l~~L~~L~l~~n---------------~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~---~~~l~~L~~~L~  162 (239)
T 2xwt_C          102 KELPLLKFLGIFNT---------------GLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNA---FQGLCNETLTLK  162 (239)
T ss_dssp             ECCTTCCEEEEEEE---------------CCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTT---TTTTBSSEEEEE
T ss_pred             CCCCCCCEEeCCCC---------------CCccccc-cccccccccccEEECCCCcchhhcCccc---ccchhcceeEEE
Confidence            78999999999976               1112222 34556666   99999976788887655   56789999 999


Q ss_pred             eccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCC-CcccEEecCCCCCCceeccCCCcccc
Q 037794          160 VDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLF-PRLFILRLIDLPKLKRFCNFTGNIIE  238 (293)
Q Consensus       160 i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f-~~L~~L~l~~~~~l~~~~~~~~~~~~  238 (293)
                      ++++.. +.+ |...+.. ++|++|++.++..++.++. ..+.        .+ ++|++|++.+ ..++.++.     ..
T Consensus       163 l~~n~l-~~i-~~~~~~~-~~L~~L~L~~n~~l~~i~~-~~~~--------~l~~~L~~L~l~~-N~l~~l~~-----~~  224 (239)
T 2xwt_C          163 LYNNGF-TSV-QGYAFNG-TKLDAVYLNKNKYLTVIDK-DAFG--------GVYSGPSLLDVSQ-TSVTALPS-----KG  224 (239)
T ss_dssp             CCSCCC-CEE-CTTTTTT-CEEEEEECTTCTTCCEECT-TTTT--------TCSBCCSEEECTT-CCCCCCCC-----TT
T ss_pred             cCCCCC-ccc-CHhhcCC-CCCCEEEcCCCCCcccCCH-HHhh--------ccccCCcEEECCC-CccccCCh-----hH
Confidence            988864 443 6665665 8999999999766777752 2111        24 7999999998 56777653     26


Q ss_pred             CCCcceEeeecCCCc
Q 037794          239 MPMLWSLTIENCPDM  253 (293)
Q Consensus       239 l~~L~~L~i~~C~~L  253 (293)
                      +++|++|+++++.+|
T Consensus       225 ~~~L~~L~l~~~~~l  239 (239)
T 2xwt_C          225 LEHLKELIARNTWTL  239 (239)
T ss_dssp             CTTCSEEECTTC---
T ss_pred             hccCceeeccCccCC
Confidence            899999999998764

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.50  E-value=6.4e-13  Score=113.16  Aligned_cols=198  Identities=20%  Similarity=0.237  Sum_probs=140.1

Q ss_pred             CcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccCc-c
Q 037794            6 SLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGI-V   84 (293)
Q Consensus         6 ~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~-~   84 (293)
                      +.+++++++. .++.+|...          .+++++|+++++. +..++.. ....+++|++|+++++ .++.+|... .
T Consensus        17 ~~~~l~~~~~-~l~~ip~~~----------~~~l~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~l~~n-~l~~i~~~~~~   82 (270)
T 2o6q_A           17 NKNSVDCSSK-KLTAIPSNI----------PADTKKLDLQSNK-LSSLPSK-AFHRLTKLRLLYLNDN-KLQTLPAGIFK   82 (270)
T ss_dssp             TTTEEECTTS-CCSSCCSCC----------CTTCSEEECCSSC-CSCCCTT-SSSSCTTCCEEECCSS-CCSCCCTTTTS
T ss_pred             CCCEEEccCC-CCCccCCCC----------CCCCCEEECcCCC-CCeeCHH-HhcCCCCCCEEECCCC-ccCeeChhhhc
Confidence            4567777664 666666532          4579999998874 4555432 2457899999999986 566666544 7


Q ss_pred             CCCCeeEEEeccccccccccccCccchhhhhhhh-hhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccC
Q 037794           85 STPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRY-EEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDC  163 (293)
Q Consensus        85 ~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c  163 (293)
                      .+++|+.|+++++               .+..++ ..+..+++|+.|+++++. ++.++...   +..+++|++|+++++
T Consensus        83 ~l~~L~~L~l~~n---------------~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~---~~~l~~L~~L~Ls~n  143 (270)
T 2o6q_A           83 ELKNLETLWVTDN---------------KLQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRV---FDSLTKLTYLSLGYN  143 (270)
T ss_dssp             SCTTCCEEECCSS---------------CCCCCCTTTTTTCSSCCEEECCSSC-CCCCCTTT---TTTCTTCCEEECCSS
T ss_pred             CCCCCCEEECCCC---------------cCCcCCHhHcccccCCCEEECCCCc-cCeeCHHH---hCcCcCCCEEECCCC
Confidence            7999999999876               111222 223668899999999854 55555433   567899999999988


Q ss_pred             CCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceeccCCCccccCCCcc
Q 037794          164 ANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLW  243 (293)
Q Consensus       164 ~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~  243 (293)
                      . +..+ +...+..+++|++|++.++ .++.++. ..+.        .+++|++|++.++ .++.++.  ..+..+++|+
T Consensus       144 ~-l~~~-~~~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~--------~l~~L~~L~L~~N-~l~~~~~--~~~~~l~~L~  208 (270)
T 2o6q_A          144 E-LQSL-PKGVFDKLTSLKELRLYNN-QLKRVPE-GAFD--------KLTELKTLKLDNN-QLKRVPE--GAFDSLEKLK  208 (270)
T ss_dssp             C-CCCC-CTTTTTTCTTCCEEECCSS-CCSCCCT-TTTT--------TCTTCCEEECCSS-CCSCCCT--TTTTTCTTCC
T ss_pred             c-CCcc-CHhHccCCcccceeEecCC-cCcEeCh-hHhc--------cCCCcCEEECCCC-cCCcCCH--HHhccccCCC
Confidence            6 4443 6666888999999999985 4555542 1111        2389999999986 6777654  4577899999


Q ss_pred             eEeeecCC
Q 037794          244 SLTIENCP  251 (293)
Q Consensus       244 ~L~i~~C~  251 (293)
                      .|+++++|
T Consensus       209 ~L~l~~N~  216 (270)
T 2o6q_A          209 MLQLQENP  216 (270)
T ss_dssp             EEECCSSC
T ss_pred             EEEecCCC
Confidence            99998864

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.49  E-value=1.5e-13  Score=128.86  Aligned_cols=117  Identities=17%  Similarity=0.217  Sum_probs=62.9

Q ss_pred             hccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCccccc-cccccc
Q 037794          121 MIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLE-EVLHLE  199 (293)
Q Consensus       121 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~-~i~~~~  199 (293)
                      +..+++|+.|+++++. +......  ..+..+++|++|++++|.....  +...+.++++|+.|++.+|.-.. .++  .
T Consensus       392 ~~~l~~L~~L~l~~n~-l~~~~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~p--~  464 (570)
T 2z63_A          392 FLGLEQLEHLDFQHSN-LKQMSEF--SVFLSLRNLIYLDISHTHTRVA--FNGIFNGLSSLEVLKMAGNSFQENFLP--D  464 (570)
T ss_dssp             EETCTTCCEEECTTSE-EESCTTS--CTTTTCTTCCEEECTTSCCEEC--CTTTTTTCTTCCEEECTTCEEGGGEEC--S
T ss_pred             ccccCCCCEEEccCCc-cccccch--hhhhcCCCCCEEeCcCCccccc--chhhhhcCCcCcEEECcCCcCccccch--h
Confidence            3455666666666543 2222110  0134566777777777653332  22335667777777777754221 122  1


Q ss_pred             ccccccccCCCCCCcccEEecCCCCCCceeccCCCccccCCCcceEeeecCCCcccc
Q 037794          200 ELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETF  256 (293)
Q Consensus       200 ~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l  256 (293)
                      .+.        .+++|++|++.++ .++.+..  ..+..+++|++|++++| +++.+
T Consensus       465 ~~~--------~l~~L~~L~l~~n-~l~~~~~--~~~~~l~~L~~L~l~~n-~l~~~  509 (570)
T 2z63_A          465 IFT--------ELRNLTFLDLSQC-QLEQLSP--TAFNSLSSLQVLNMASN-QLKSV  509 (570)
T ss_dssp             CCT--------TCTTCCEEECTTS-CCCEECT--TTTTTCTTCCEEECCSS-CCSCC
T ss_pred             hhh--------cccCCCEEECCCC-ccccCCh--hhhhcccCCCEEeCCCC-cCCCC
Confidence            111        2367777777775 4555422  45566777777777776 56666

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.49  E-value=1.4e-13  Score=120.05  Aligned_cols=201  Identities=12%  Similarity=0.074  Sum_probs=108.3

Q ss_pred             CCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccCc
Q 037794            4 PNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGI   83 (293)
Q Consensus         4 l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~   83 (293)
                      +++|++|+++++ .++.++...       ...+++|++|+++++..- ....   ...+++|+.|++++| .++.++   
T Consensus        33 ~~~L~~L~L~~n-~l~~~~~~~-------~~~l~~L~~L~Ls~n~l~-~~~~---~~~l~~L~~L~Ls~n-~l~~l~---   96 (317)
T 3o53_A           33 AWNVKELDLSGN-PLSQISAAD-------LAPFTKLELLNLSSNVLY-ETLD---LESLSTLRTLDLNNN-YVQELL---   96 (317)
T ss_dssp             GGGCSEEECTTS-CCCCCCHHH-------HTTCTTCCEEECTTSCCE-EEEE---ETTCTTCCEEECCSS-EEEEEE---
T ss_pred             CCCCCEEECcCC-ccCcCCHHH-------hhCCCcCCEEECCCCcCC-cchh---hhhcCCCCEEECcCC-cccccc---
Confidence            457778888776 455444321       122777888887776432 2221   336777777777775 355554   


Q ss_pred             cCCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccC
Q 037794           84 VSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDC  163 (293)
Q Consensus        84 ~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c  163 (293)
                       ..++|+.|.++++.               +..+.  ...+++|+.|+++++. ++.+....   +..+++|++|+++++
T Consensus        97 -~~~~L~~L~l~~n~---------------l~~~~--~~~~~~L~~L~l~~N~-l~~~~~~~---~~~l~~L~~L~Ls~N  154 (317)
T 3o53_A           97 -VGPSIETLHAANNN---------------ISRVS--CSRGQGKKNIYLANNK-ITMLRDLD---EGCRSRVQYLDLKLN  154 (317)
T ss_dssp             -ECTTCCEEECCSSC---------------CSEEE--ECCCSSCEEEECCSSC-CCSGGGBC---TGGGSSEEEEECTTS
T ss_pred             -CCCCcCEEECCCCc---------------cCCcC--ccccCCCCEEECCCCC-CCCccchh---hhccCCCCEEECCCC
Confidence             23677777776550               11111  1235667777776643 34333222   445667777777766


Q ss_pred             CCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceeccCCCccccCCCcc
Q 037794          164 ANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLW  243 (293)
Q Consensus       164 ~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~  243 (293)
                      .... +.+......+++|++|++.++ .++.++...           .+++|++|+++++ .++.++   ..+..+++|+
T Consensus       155 ~l~~-~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~-----------~l~~L~~L~Ls~N-~l~~l~---~~~~~l~~L~  217 (317)
T 3o53_A          155 EIDT-VNFAELAASSDTLEHLNLQYN-FIYDVKGQV-----------VFAKLKTLDLSSN-KLAFMG---PEFQSAAGVT  217 (317)
T ss_dssp             CCCE-EEGGGGGGGTTTCCEEECTTS-CCCEEECCC-----------CCTTCCEEECCSS-CCCEEC---GGGGGGTTCS
T ss_pred             CCCc-ccHHHHhhccCcCCEEECCCC-cCccccccc-----------ccccCCEEECCCC-cCCcch---hhhcccCccc
Confidence            4332 223333345677777777763 344442110           1366666666664 455543   2355566666


Q ss_pred             eEeeecCCCccccccccc
Q 037794          244 SLTIENCPDMETFISNSV  261 (293)
Q Consensus       244 ~L~i~~C~~L~~l~p~~l  261 (293)
                      +|+++++ +++.+ |..+
T Consensus       218 ~L~L~~N-~l~~l-~~~~  233 (317)
T 3o53_A          218 WISLRNN-KLVLI-EKAL  233 (317)
T ss_dssp             EEECTTS-CCCEE-CTTC
T ss_pred             EEECcCC-cccch-hhHh
Confidence            6666665 46555 5433

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.49  E-value=6.4e-14  Score=137.27  Aligned_cols=221  Identities=10%  Similarity=0.080  Sum_probs=145.8

Q ss_pred             CCCCCCcceEeccccccceE------------------eccccccccccccccccccceeeccccccccccccccccccC
Q 037794            1 VGIPNSLVNLNVSYCEKIEE------------------IIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEF   62 (293)
Q Consensus         1 ~g~l~~L~~L~l~~c~~l~~------------------i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~   62 (293)
                      ++++++|++|+++++. +..                  +|...+.      ..+++|+.|+++++.....+|..  ...+
T Consensus       444 l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~~l~f------~~L~~L~~L~Ls~N~l~~~iP~~--l~~L  514 (876)
T 4ecn_A          444 IQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEELSW------SNLKDLTDVELYNCPNMTQLPDF--LYDL  514 (876)
T ss_dssp             GGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCG------GGCTTCCEEEEESCTTCCSCCGG--GGGC
T ss_pred             HhcCCCCCEEECcCCc-CCCCcccccccccccccccccCChhhhh------ccCCCCCEEECcCCCCCccChHH--HhCC
Confidence            3578899999999975 444                  5544330      03899999999998766767743  6689


Q ss_pred             CCcceEeEcCCCCccc--cccCcc-------CCCCeeEEEeccccccccccccCccchhhhhhhhh--hhccCCCccEEE
Q 037794           63 PSLERVFVTRCPNMKT--FSQGIV-------STPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYE--EMIGFRDIERLQ  131 (293)
Q Consensus        63 ~~L~~L~i~~c~~l~~--lp~~~~-------~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~L~~L~  131 (293)
                      ++|+.|+++++..++.  +|..+.       .+++|+.|.++++               .+..++.  .+..+++|+.|+
T Consensus       515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N---------------~L~~ip~~~~l~~L~~L~~L~  579 (876)
T 4ecn_A          515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN---------------NLEEFPASASLQKMVKLGLLD  579 (876)
T ss_dssp             SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS---------------CCCBCCCHHHHTTCTTCCEEE
T ss_pred             CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC---------------cCCccCChhhhhcCCCCCEEE
Confidence            9999999999864553  665433       4559999999876               1224454  567888999999


Q ss_pred             ecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCC-CCeEEecCccccccccccccccc-------
Q 037794          132 LSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSN-LRWLEVRNCDSLEEVLHLEELNA-------  203 (293)
Q Consensus       132 l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~-L~~L~i~~c~~l~~i~~~~~~~~-------  203 (293)
                      ++++. +..++  .   +..+++|++|+++++... . +|.. +.++++ |+.|++.++. ++.++..-+...       
T Consensus       580 Ls~N~-l~~lp--~---~~~L~~L~~L~Ls~N~l~-~-lp~~-l~~l~~~L~~L~Ls~N~-L~~lp~~~~~~~~~~L~~L  649 (876)
T 4ecn_A          580 CVHNK-VRHLE--A---FGTNVKLTDLKLDYNQIE-E-IPED-FCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSV  649 (876)
T ss_dssp             CTTSC-CCBCC--C---CCTTSEESEEECCSSCCS-C-CCTT-SCEECTTCCEEECCSSC-CCSCCSCCCTTCSSCEEEE
T ss_pred             CCCCC-cccch--h---hcCCCcceEEECcCCccc-c-chHH-HhhccccCCEEECcCCC-CCcCchhhhccccCCCCEE
Confidence            98864 44444  2   557788899999888754 3 4654 677888 9999888854 545542111000       


Q ss_pred             ------ccccCCC--------CCCcccEEecCCCCCCceeccCCCccccCCCcceEeeecCCCcccccccc
Q 037794          204 ------DKEHIGP--------LFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNS  260 (293)
Q Consensus       204 ------~~~~~~~--------~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~p~~  260 (293)
                            ..+....        ..++|+.|+++++ .++.++.  .....+++|+.|++++| +++.+ |.+
T Consensus       650 ~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N-~L~~lp~--~~~~~l~~L~~L~Ls~N-~L~~i-p~~  715 (876)
T 4ecn_A          650 DFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN-EIQKFPT--ELFATGSPISTIILSNN-LMTSI-PEN  715 (876)
T ss_dssp             ECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSS-CCCSCCH--HHHHTTCCCSEEECCSC-CCSCC-CTT
T ss_pred             ECcCCcCCCccccchhhhccccCCCcCEEEccCC-cCCccCH--HHHccCCCCCEEECCCC-cCCcc-ChH
Confidence                  0000000        1137888888775 4555542  22347889999999987 68877 653

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.49  E-value=6.2e-13  Score=116.43  Aligned_cols=219  Identities=12%  Similarity=0.141  Sum_probs=118.9

Q ss_pred             CcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCcccc-ccCcc
Q 037794            6 SLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTF-SQGIV   84 (293)
Q Consensus         6 ~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l-p~~~~   84 (293)
                      +++.++++++ .++.+|...          .++++.|+++++. ++.++.. ....+++|++|+++++. ++.+ |..+.
T Consensus        32 ~l~~l~~~~~-~l~~lp~~~----------~~~l~~L~L~~n~-i~~~~~~-~~~~l~~L~~L~L~~n~-l~~~~~~~~~   97 (330)
T 1xku_A           32 HLRVVQCSDL-GLEKVPKDL----------PPDTALLDLQNNK-ITEIKDG-DFKNLKNLHTLILINNK-ISKISPGAFA   97 (330)
T ss_dssp             ETTEEECTTS-CCCSCCCSC----------CTTCCEEECCSSC-CCCBCTT-TTTTCTTCCEEECCSSC-CCCBCTTTTT
T ss_pred             CCeEEEecCC-CccccCccC----------CCCCeEEECCCCc-CCEeChh-hhccCCCCCEEECCCCc-CCeeCHHHhc
Confidence            4666666654 455555432          4689999998874 5555442 24578999999999874 5544 67788


Q ss_pred             CCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCC
Q 037794           85 STPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCA  164 (293)
Q Consensus        85 ~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~  164 (293)
                      .+++|+.|+++++. ..              .++..  .+++|++|+++++. ++.++...   +..+++|++|+++++.
T Consensus        98 ~l~~L~~L~Ls~n~-l~--------------~l~~~--~~~~L~~L~l~~n~-l~~~~~~~---~~~l~~L~~L~l~~n~  156 (330)
T 1xku_A           98 PLVKLERLYLSKNQ-LK--------------ELPEK--MPKTLQELRVHENE-ITKVRKSV---FNGLNQMIVVELGTNP  156 (330)
T ss_dssp             TCTTCCEEECCSSC-CS--------------BCCSS--CCTTCCEEECCSSC-CCBBCHHH---HTTCTTCCEEECCSSC
T ss_pred             CCCCCCEEECCCCc-CC--------------ccChh--hcccccEEECCCCc-ccccCHhH---hcCCccccEEECCCCc
Confidence            89999999998761 11              11111  11445555554432 22222111   2234445555554443


Q ss_pred             CCCccCChhHHhccCCCCeEEecCccccccccccc--c----------cccccccCCCCCCcccEEecCCCCCCceeccC
Q 037794          165 NMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLE--E----------LNADKEHIGPLFPRLFILRLIDLPKLKRFCNF  232 (293)
Q Consensus       165 ~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~--~----------~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~  232 (293)
                      ....-.....+.++++|+.|++.++ .++.++...  .          +..........+++|++|++.++ .++.+.. 
T Consensus       157 l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-  233 (330)
T 1xku_A          157 LKSSGIENGAFQGMKKLSYIRIADT-NITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN-SISAVDN-  233 (330)
T ss_dssp             CCGGGBCTTGGGGCTTCCEEECCSS-CCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSS-CCCEECT-
T ss_pred             CCccCcChhhccCCCCcCEEECCCC-ccccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC-cCceeCh-
Confidence            2211011122444444444444442 122221100  0          00000000012378889998885 5666543 


Q ss_pred             CCccccCCCcceEeeecCCCccccccccchhhc
Q 037794          233 TGNIIEMPMLWSLTIENCPDMETFISNSVLHVT  265 (293)
Q Consensus       233 ~~~~~~l~~L~~L~i~~C~~L~~l~p~~l~~l~  265 (293)
                       ..+..+++|++|++++| +++.+ |.++..+.
T Consensus       234 -~~~~~l~~L~~L~L~~N-~l~~l-p~~l~~l~  263 (330)
T 1xku_A          234 -GSLANTPHLRELHLNNN-KLVKV-PGGLADHK  263 (330)
T ss_dssp             -TTGGGSTTCCEEECCSS-CCSSC-CTTTTTCS
T ss_pred             -hhccCCCCCCEEECCCC-cCccC-ChhhccCC
Confidence             46778899999999998 68888 87665544

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.49  E-value=3.8e-13  Score=116.94  Aligned_cols=193  Identities=19%  Similarity=0.270  Sum_probs=140.0

Q ss_pred             CCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccCc
Q 037794            4 PNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGI   83 (293)
Q Consensus         4 l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~   83 (293)
                      +++|++|++++| .++.++. .        ..+++|+.|+++++. +..++.   ...+++|+.|+++++. ++.++ .+
T Consensus        40 l~~L~~L~l~~~-~i~~l~~-~--------~~l~~L~~L~L~~n~-i~~~~~---~~~l~~L~~L~L~~n~-l~~~~-~~  103 (308)
T 1h6u_A           40 LDGITTLSAFGT-GVTTIEG-V--------QYLNNLIGLELKDNQ-ITDLAP---LKNLTKITELELSGNP-LKNVS-AI  103 (308)
T ss_dssp             HHTCCEEECTTS-CCCCCTT-G--------GGCTTCCEEECCSSC-CCCCGG---GTTCCSCCEEECCSCC-CSCCG-GG
T ss_pred             cCCcCEEEeeCC-CccCchh-h--------hccCCCCEEEccCCc-CCCChh---HccCCCCCEEEccCCc-CCCch-hh
Confidence            568899999887 5565542 2        238899999998873 444543   4578999999999874 66664 56


Q ss_pred             cCCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccC
Q 037794           84 VSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDC  163 (293)
Q Consensus        84 ~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c  163 (293)
                      ..+++|+.|++++|               .+..+. .+..+++|+.|+++++. ++.++.     +..+++|++|++++|
T Consensus       104 ~~l~~L~~L~l~~n---------------~l~~~~-~l~~l~~L~~L~l~~n~-l~~~~~-----l~~l~~L~~L~l~~n  161 (308)
T 1h6u_A          104 AGLQSIKTLDLTST---------------QITDVT-PLAGLSNLQVLYLDLNQ-ITNISP-----LAGLTNLQYLSIGNA  161 (308)
T ss_dssp             TTCTTCCEEECTTS---------------CCCCCG-GGTTCTTCCEEECCSSC-CCCCGG-----GGGCTTCCEEECCSS
T ss_pred             cCCCCCCEEECCCC---------------CCCCch-hhcCCCCCCEEECCCCc-cCcCcc-----ccCCCCccEEEccCC
Confidence            78899999999877               111222 25778999999999864 444331     557799999999988


Q ss_pred             CCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceeccCCCccccCCCcc
Q 037794          164 ANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLW  243 (293)
Q Consensus       164 ~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~  243 (293)
                      . +.++ +.  +..+++|+.|++.++ .++.++.   ..        .+++|++|++.++ .++.+.    .+..+++|+
T Consensus       162 ~-l~~~-~~--l~~l~~L~~L~l~~n-~l~~~~~---l~--------~l~~L~~L~L~~N-~l~~~~----~l~~l~~L~  220 (308)
T 1h6u_A          162 Q-VSDL-TP--LANLSKLTTLKADDN-KISDISP---LA--------SLPNLIEVHLKNN-QISDVS----PLANTSNLF  220 (308)
T ss_dssp             C-CCCC-GG--GTTCTTCCEEECCSS-CCCCCGG---GG--------GCTTCCEEECTTS-CCCBCG----GGTTCTTCC
T ss_pred             c-CCCC-hh--hcCCCCCCEEECCCC-ccCcChh---hc--------CCCCCCEEEccCC-ccCccc----cccCCCCCC
Confidence            5 4443 33  778999999999984 4555542   11        2489999999986 566653    477899999


Q ss_pred             eEeeecCCCcccc
Q 037794          244 SLTIENCPDMETF  256 (293)
Q Consensus       244 ~L~i~~C~~L~~l  256 (293)
                      .|+++++ .++..
T Consensus       221 ~L~l~~N-~i~~~  232 (308)
T 1h6u_A          221 IVTLTNQ-TITNQ  232 (308)
T ss_dssp             EEEEEEE-EEECC
T ss_pred             EEEccCC-eeecC
Confidence            9999997 47665

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.48  E-value=9.1e-13  Score=124.67  Aligned_cols=91  Identities=14%  Similarity=0.082  Sum_probs=48.9

Q ss_pred             CCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceeccC
Q 037794          153 NNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNF  232 (293)
Q Consensus       153 ~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~  232 (293)
                      ++|+.|++++|....   + ..+..+++|+.|++.++ .+..++. ..+.        .+++|+.|++.++ .++.++  
T Consensus       232 ~~L~~L~L~~n~l~~---~-~~l~~l~~L~~L~Ls~N-~l~~~~~-~~~~--------~l~~L~~L~Ls~N-~l~~l~--  294 (597)
T 3oja_B          232 VELTILKLQHNNLTD---T-AWLLNYPGLVEVDLSYN-ELEKIMY-HPFV--------KMQRLERLYISNN-RLVALN--  294 (597)
T ss_dssp             SCCCEEECCSSCCCC---C-GGGGGCTTCSEEECCSS-CCCEEES-GGGT--------TCSSCCEEECTTS-CCCEEE--
T ss_pred             CCCCEEECCCCCCCC---C-hhhccCCCCCEEECCCC-ccCCCCH-HHhc--------CccCCCEEECCCC-CCCCCC--
Confidence            456666666654332   2 23566777777777774 3333321 1111        1366777777663 455553  


Q ss_pred             CCccccCCCcceEeeecCCCccccccccchh
Q 037794          233 TGNIIEMPMLWSLTIENCPDMETFISNSVLH  263 (293)
Q Consensus       233 ~~~~~~l~~L~~L~i~~C~~L~~l~p~~l~~  263 (293)
                       .....+++|+.|++++| +++.+ |.++..
T Consensus       295 -~~~~~l~~L~~L~Ls~N-~l~~i-~~~~~~  322 (597)
T 3oja_B          295 -LYGQPIPTLKVLDLSHN-HLLHV-ERNQPQ  322 (597)
T ss_dssp             -CSSSCCTTCCEEECCSS-CCCCC-GGGHHH
T ss_pred             -cccccCCCCcEEECCCC-CCCcc-Cccccc
Confidence             23345667777777766 46565 554443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.48  E-value=1.9e-13  Score=128.15  Aligned_cols=181  Identities=18%  Similarity=0.269  Sum_probs=114.5

Q ss_pred             ccccceeeccccccccccc-cccccccCCCcceEeEcCCCCccccccCccCCCCeeEEEeccccccccccccCccchhhh
Q 037794           36 FNELKFLELDDLPRLTSFC-LENYTLEFPSLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTI  114 (293)
Q Consensus        36 ~~~L~~L~l~~~~~l~~~~-~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~  114 (293)
                      +++|++|+++++.. .... .......+++|+.|++++|. +..+|..+..+++|+.|.+.+|               .+
T Consensus       346 ~~~L~~L~l~~n~l-~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~l~~L~~L~l~~n---------------~l  408 (570)
T 2z63_A          346 LPSLEFLDLSRNGL-SFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHS---------------NL  408 (570)
T ss_dssp             CTTCCEEECCSSCC-BEEEEEEHHHHTCSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTS---------------EE
T ss_pred             CCCCCEEeCcCCcc-CccccccccccccCccCEEECCCCc-cccccccccccCCCCEEEccCC---------------cc
Confidence            55555555555431 1111 01113356666666666653 4444444556667777776654               11


Q ss_pred             hhhh--hhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccc
Q 037794          115 QKRY--EEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSL  192 (293)
Q Consensus       115 ~~l~--~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l  192 (293)
                      ....  ..+..+++|++|+++++. +.......   +..+++|++|++++|......+|. .+..+++|+.|++.+|. +
T Consensus       409 ~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~---~~~l~~L~~L~l~~n~l~~~~~p~-~~~~l~~L~~L~l~~n~-l  482 (570)
T 2z63_A          409 KQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGI---FNGLSSLEVLKMAGNSFQENFLPD-IFTELRNLTFLDLSQCQ-L  482 (570)
T ss_dssp             ESCTTSCTTTTCTTCCEEECTTSC-CEECCTTT---TTTCTTCCEEECTTCEEGGGEECS-CCTTCTTCCEEECTTSC-C
T ss_pred             ccccchhhhhcCCCCCEEeCcCCc-ccccchhh---hhcCCcCcEEECcCCcCccccchh-hhhcccCCCEEECCCCc-c
Confidence            1111  234678999999999975 44443333   567899999999999755333354 47889999999999964 4


Q ss_pred             cccccccccccccccCCCCCCcccEEecCCCCCCceeccCCCccccCCCcceEeeecCC
Q 037794          193 EEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCP  251 (293)
Q Consensus       193 ~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~  251 (293)
                      +.+.. ..+.        .+++|++|++.++ .++.++.  ..+..+++|++|++++++
T Consensus       483 ~~~~~-~~~~--------~l~~L~~L~l~~n-~l~~~~~--~~~~~l~~L~~L~l~~N~  529 (570)
T 2z63_A          483 EQLSP-TAFN--------SLSSLQVLNMASN-QLKSVPD--GIFDRLTSLQKIWLHTNP  529 (570)
T ss_dssp             CEECT-TTTT--------TCTTCCEEECCSS-CCSCCCT--TTTTTCTTCCEEECCSSC
T ss_pred             ccCCh-hhhh--------cccCCCEEeCCCC-cCCCCCH--HHhhcccCCcEEEecCCc
Confidence            44421 2222        2389999999996 6777653  567889999999999864

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.48  E-value=7.5e-13  Score=121.31  Aligned_cols=78  Identities=18%  Similarity=0.267  Sum_probs=41.8

Q ss_pred             CCCCCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccc
Q 037794            1 VGIPNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFS   80 (293)
Q Consensus         1 ~g~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp   80 (293)
                      ++.+++|++|+++++ .++.++  .+        .+++|++|+++++ .+..++    ...+++|++|+++++ .++.++
T Consensus        81 ~~~l~~L~~L~Ls~N-~l~~~~--~~--------~l~~L~~L~L~~N-~l~~l~----~~~l~~L~~L~l~~N-~l~~l~  143 (457)
T 3bz5_A           81 LSQNTNLTYLACDSN-KLTNLD--VT--------PLTKLTYLNCDTN-KLTKLD----VSQNPLLTYLNCARN-TLTEID  143 (457)
T ss_dssp             CTTCTTCSEEECCSS-CCSCCC--CT--------TCTTCCEEECCSS-CCSCCC----CTTCTTCCEEECTTS-CCSCCC
T ss_pred             cccCCCCCEEECcCC-CCceee--cC--------CCCcCCEEECCCC-cCCeec----CCCCCcCCEEECCCC-ccceec
Confidence            356777888888776 344443  11        2666777766665 233333    224556666666554 233332


Q ss_pred             cCccCCCCeeEEEeccc
Q 037794           81 QGIVSTPKLHEVQVSKK   97 (293)
Q Consensus        81 ~~~~~~~~L~~L~l~~c   97 (293)
                        +..+++|+.|++++|
T Consensus       144 --l~~l~~L~~L~l~~n  158 (457)
T 3bz5_A          144 --VSHNTQLTELDCHLN  158 (457)
T ss_dssp             --CTTCTTCCEEECTTC
T ss_pred             --cccCCcCCEEECCCC
Confidence              344555555555544

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.47  E-value=5.1e-13  Score=118.15  Aligned_cols=224  Identities=15%  Similarity=0.097  Sum_probs=124.7

Q ss_pred             CCCCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCcccccc
Q 037794            2 GIPNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQ   81 (293)
Q Consensus         2 g~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~   81 (293)
                      +.+++|++|+++++ .++.++...       ...+++|++|+++++. +..++.. ....+++|++|+++++ .++.+|.
T Consensus        73 ~~l~~L~~L~L~~n-~l~~~~~~~-------~~~l~~L~~L~Ls~n~-l~~~~~~-~~~~l~~L~~L~L~~n-~l~~l~~  141 (353)
T 2z80_A           73 QRCVNLQALVLTSN-GINTIEEDS-------FSSLGSLEHLDLSYNY-LSNLSSS-WFKPLSSLTFLNLLGN-PYKTLGE  141 (353)
T ss_dssp             TTCTTCCEEECTTS-CCCEECTTT-------TTTCTTCCEEECCSSC-CSSCCHH-HHTTCTTCSEEECTTC-CCSSSCS
T ss_pred             ccCCCCCEEECCCC-ccCccCHhh-------cCCCCCCCEEECCCCc-CCcCCHh-HhCCCccCCEEECCCC-CCcccCc
Confidence            56788888888886 566665421       1125666666666542 2333321 1224556666666554 3444443


Q ss_pred             --CccCCCCeeEEEeccccccccc---cccCc------c--chhhhhhhhhhhccCCCccEEEecCCCCceEeccCCCCC
Q 037794           82 --GIVSTPKLHEVQVSKKEEDELH---HWEGN------K--LNSTIQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALP  148 (293)
Q Consensus        82 --~~~~~~~L~~L~l~~c~~~~~~---~~~~~------~--~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~  148 (293)
                        .+..+++|+.|+++++......   .+.+.      +  .+......+..+..+++|++|+++++. ++.++...   
T Consensus       142 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~---  217 (353)
T 2z80_A          142 TSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ-HILLLEIF---  217 (353)
T ss_dssp             SCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC-STTHHHHH---
T ss_pred             hhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc-cccchhhh---
Confidence              3445556666665554211110   00000      0  001111123455778999999999865 44333211   


Q ss_pred             cccCCCccEEEeccCCCCCccCCh--hHHhccCCCCeEEecCcccccc-----cccccccccccccCCCCCCcccEEecC
Q 037794          149 VSFFNNLFKLVVDDCANMSSAIPA--NLLRCLSNLRWLEVRNCDSLEE-----VLHLEELNADKEHIGPLFPRLFILRLI  221 (293)
Q Consensus       149 ~~~l~~L~~L~i~~c~~l~~~~p~--~~~~~l~~L~~L~i~~c~~l~~-----i~~~~~~~~~~~~~~~~f~~L~~L~l~  221 (293)
                      ...+++|++|+++++..-... +.  ......+.++.+++.++. +.+     ++  +.+.        .+++|++|+++
T Consensus       218 ~~~~~~L~~L~L~~n~l~~~~-~~~l~~~~~~~~l~~l~L~~~~-l~~~~l~~l~--~~l~--------~l~~L~~L~Ls  285 (353)
T 2z80_A          218 VDVTSSVECLELRDTDLDTFH-FSELSTGETNSLIKKFTFRNVK-ITDESLFQVM--KLLN--------QISGLLELEFS  285 (353)
T ss_dssp             HHHTTTEEEEEEESCBCTTCC-CC------CCCCCCEEEEESCB-CCHHHHHHHH--HHHH--------TCTTCCEEECC
T ss_pred             hhhcccccEEECCCCcccccc-ccccccccccchhhcccccccc-ccCcchhhhH--HHHh--------cccCCCEEECC
Confidence            334789999999998644321 11  123346778888888753 222     21  1111        24899999999


Q ss_pred             CCCCCceeccCCCccccCCCcceEeeecCCCcccc
Q 037794          222 DLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETF  256 (293)
Q Consensus       222 ~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l  256 (293)
                      ++ .++.++.  ..+..+++|++|++++++ +..-
T Consensus       286 ~N-~l~~i~~--~~~~~l~~L~~L~L~~N~-~~~~  316 (353)
T 2z80_A          286 RN-QLKSVPD--GIFDRLTSLQKIWLHTNP-WDCS  316 (353)
T ss_dssp             SS-CCCCCCT--TTTTTCTTCCEEECCSSC-BCCC
T ss_pred             CC-CCCccCH--HHHhcCCCCCEEEeeCCC-ccCc
Confidence            96 6777653  335789999999999985 4443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.47  E-value=1.1e-12  Score=117.40  Aligned_cols=213  Identities=13%  Similarity=0.118  Sum_probs=111.4

Q ss_pred             CCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCcccc-ccC
Q 037794            4 PNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTF-SQG   82 (293)
Q Consensus         4 l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l-p~~   82 (293)
                      ++++++|+++++ .++.+|...-       ..+++|++|+++++. +..++.. ....+++|++|+++++. ++.+ |..
T Consensus        44 l~~l~~l~l~~~-~l~~l~~~~~-------~~l~~L~~L~L~~n~-i~~~~~~-~~~~l~~L~~L~L~~n~-l~~~~~~~  112 (390)
T 3o6n_A           44 LNNQKIVTFKNS-TMRKLPAALL-------DSFRQVELLNLNDLQ-IEEIDTY-AFAYAHTIQKLYMGFNA-IRYLPPHV  112 (390)
T ss_dssp             GCCCSEEEEESC-EESEECTHHH-------HHCCCCSEEECTTSC-CCEECTT-TTTTCTTCCEEECCSSC-CCCCCTTT
T ss_pred             cCCceEEEecCC-chhhCChhHh-------cccccCcEEECCCCc-ccccChh-hccCCCCcCEEECCCCC-CCcCCHHH
Confidence            467777887775 5666665421       126777788777763 3444332 13467777777777764 4433 344


Q ss_pred             ccCCCCeeEEEeccccccccccccCccchhhhhhhhhh-hccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEec
Q 037794           83 IVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEE-MIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVD  161 (293)
Q Consensus        83 ~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~  161 (293)
                      +..+++|+.|+++++               .+..++.. +..+++|+.|+++++. +..+....   +..+++|++|+++
T Consensus       113 ~~~l~~L~~L~L~~n---------------~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~---~~~l~~L~~L~l~  173 (390)
T 3o6n_A          113 FQNVPLLTVLVLERN---------------DLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDT---FQATTSLQNLQLS  173 (390)
T ss_dssp             TTTCTTCCEEECCSS---------------CCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTT---TSSCTTCCEEECC
T ss_pred             hcCCCCCCEEECCCC---------------ccCcCCHHHhcCCCCCcEEECCCCc-cCccChhh---ccCCCCCCEEECC
Confidence            567777777777765               11122222 2456666666666643 33333222   3455666666666


Q ss_pred             cCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccc-----------------------------cccCCCCC
Q 037794          162 DCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNAD-----------------------------KEHIGPLF  212 (293)
Q Consensus       162 ~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~-----------------------------~~~~~~~f  212 (293)
                      ++.... + +   +..+++|+.|++.++ .++.+.........                             +......+
T Consensus       174 ~n~l~~-~-~---~~~l~~L~~L~l~~n-~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l  247 (390)
T 3o6n_A          174 SNRLTH-V-D---LSLIPSLFHANVSYN-LLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNY  247 (390)
T ss_dssp             SSCCSB-C-C---GGGCTTCSEEECCSS-CCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGC
T ss_pred             CCcCCc-c-c---cccccccceeecccc-cccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCC
Confidence            554222 1 2   233444444444432 12111100000000                             00000123


Q ss_pred             CcccEEecCCCCCCceeccCCCccccCCCcceEeeecCCCcccc
Q 037794          213 PRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETF  256 (293)
Q Consensus       213 ~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l  256 (293)
                      ++|++|+++++ .++.+..  ..+..+++|++|++++| +++.+
T Consensus       248 ~~L~~L~Ls~n-~l~~~~~--~~~~~l~~L~~L~L~~n-~l~~~  287 (390)
T 3o6n_A          248 PGLVEVDLSYN-ELEKIMY--HPFVKMQRLERLYISNN-RLVAL  287 (390)
T ss_dssp             TTCSEEECCSS-CCCEEES--GGGTTCSSCCEEECCSS-CCCEE
T ss_pred             CCccEEECCCC-cCCCcCh--hHccccccCCEEECCCC-cCccc
Confidence            67777777775 4555432  55667788888888886 57776

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.47  E-value=7.6e-13  Score=116.01  Aligned_cols=207  Identities=16%  Similarity=0.230  Sum_probs=111.7

Q ss_pred             CCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccCc
Q 037794            4 PNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGI   83 (293)
Q Consensus         4 l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~   83 (293)
                      .++|++|+++++ .++.++...       ...+++|++|+++++. +..+... ....+++|++|+++++ .++.+|...
T Consensus        53 ~~~l~~L~l~~n-~i~~~~~~~-------~~~l~~L~~L~L~~n~-l~~~~~~-~~~~l~~L~~L~L~~n-~l~~l~~~~  121 (332)
T 2ft3_A           53 SPDTTLLDLQNN-DISELRKDD-------FKGLQHLYALVLVNNK-ISKIHEK-AFSPLRKLQKLYISKN-HLVEIPPNL  121 (332)
T ss_dssp             CTTCCEEECCSS-CCCEECTTT-------TTTCTTCCEEECCSSC-CCEECGG-GSTTCTTCCEEECCSS-CCCSCCSSC
T ss_pred             CCCCeEEECCCC-cCCccCHhH-------hhCCCCCcEEECCCCc-cCccCHh-HhhCcCCCCEEECCCC-cCCccCccc
Confidence            356778888776 455555422       1226777777777653 3333221 1346677777777765 455555443


Q ss_pred             cCCCCeeEEEeccccccccccccCccchhhhhhhhh-hhccCCCccEEEecCCCCceE--eccCC---------------
Q 037794           84 VSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYE-EMIGFRDIERLQLSHFPRLKE--IWHGQ---------------  145 (293)
Q Consensus        84 ~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~--~~~~~---------------  145 (293)
                      .  ++|++|+++++.               +..++. .+..+++|+.|+++++. ++.  +....               
T Consensus       122 ~--~~L~~L~l~~n~---------------i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~L~~L~l~~n~  183 (332)
T 2ft3_A          122 P--SSLVELRIHDNR---------------IRKVPKGVFSGLRNMNCIEMGGNP-LENSGFEPGAFDGLKLNYLRISEAK  183 (332)
T ss_dssp             C--TTCCEEECCSSC---------------CCCCCSGGGSSCSSCCEEECCSCC-CBGGGSCTTSSCSCCCSCCBCCSSB
T ss_pred             c--ccCCEEECCCCc---------------cCccCHhHhCCCccCCEEECCCCc-cccCCCCcccccCCccCEEECcCCC
Confidence            3  667777766541               011111 12344455555554432 111  00000               


Q ss_pred             --CCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCC
Q 037794          146 --ALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDL  223 (293)
Q Consensus       146 --~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~  223 (293)
                        .+|...+++|++|+++++... .+ +...+.++++|+.|++.++ .++.++. ..+.        .+++|++|++.++
T Consensus       184 l~~l~~~~~~~L~~L~l~~n~i~-~~-~~~~l~~l~~L~~L~L~~N-~l~~~~~-~~~~--------~l~~L~~L~L~~N  251 (332)
T 2ft3_A          184 LTGIPKDLPETLNELHLDHNKIQ-AI-ELEDLLRYSKLYRLGLGHN-QIRMIEN-GSLS--------FLPTLRELHLDNN  251 (332)
T ss_dssp             CSSCCSSSCSSCSCCBCCSSCCC-CC-CTTSSTTCTTCSCCBCCSS-CCCCCCT-TGGG--------GCTTCCEEECCSS
T ss_pred             CCccCccccCCCCEEECCCCcCC-cc-CHHHhcCCCCCCEEECCCC-cCCcCCh-hHhh--------CCCCCCEEECCCC
Confidence              012222356777777666433 22 3334666777777777773 3444331 1111        2378888888875


Q ss_pred             CCCceeccCCCccccCCCcceEeeecCCCcccc
Q 037794          224 PKLKRFCNFTGNIIEMPMLWSLTIENCPDMETF  256 (293)
Q Consensus       224 ~~l~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l  256 (293)
                       .++.++   ..+..+++|++|+++++ +++.+
T Consensus       252 -~l~~lp---~~l~~l~~L~~L~l~~N-~l~~~  279 (332)
T 2ft3_A          252 -KLSRVP---AGLPDLKLLQVVYLHTN-NITKV  279 (332)
T ss_dssp             -CCCBCC---TTGGGCTTCCEEECCSS-CCCBC
T ss_pred             -cCeecC---hhhhcCccCCEEECCCC-CCCcc
Confidence             566554   45777888888888886 57776

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.47  E-value=3.5e-13  Score=114.95  Aligned_cols=10  Identities=30%  Similarity=0.285  Sum_probs=6.3

Q ss_pred             ccccchhhcc
Q 037794          257 ISNSVLHVTT  266 (293)
Q Consensus       257 ~p~~l~~l~~  266 (293)
                      +|.+++.+..
T Consensus       238 ip~~~~~~~~  247 (272)
T 3rfs_A          238 VRNSAGSVAP  247 (272)
T ss_dssp             BBCTTSCBCG
T ss_pred             ccCcccccCC
Confidence            4666666655

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.46  E-value=3.9e-13  Score=124.16  Aligned_cols=203  Identities=12%  Similarity=0.078  Sum_probs=119.2

Q ss_pred             CCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccCc
Q 037794            4 PNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGI   83 (293)
Q Consensus         4 l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~   83 (293)
                      +++|++|+++++ .+..+++..       ...+++|++|+++++..-...+    ...+++|+.|++++| .++.+|.  
T Consensus        33 ~~~L~~L~Ls~n-~l~~~~~~~-------~~~l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N-~l~~l~~--   97 (487)
T 3oja_A           33 AWNVKELDLSGN-PLSQISAAD-------LAPFTKLELLNLSSNVLYETLD----LESLSTLRTLDLNNN-YVQELLV--   97 (487)
T ss_dssp             GGGCCEEECCSS-CCCCCCGGG-------GTTCTTCCEEECTTSCCEEEEE----CTTCTTCCEEECCSS-EEEEEEE--
T ss_pred             CCCccEEEeeCC-cCCCCCHHH-------HhCCCCCCEEEeeCCCCCCCcc----cccCCCCCEEEecCC-cCCCCCC--
Confidence            347888888886 555554321       2237888888888875322222    346788888888876 4665552  


Q ss_pred             cCCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccC
Q 037794           84 VSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDC  163 (293)
Q Consensus        84 ~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c  163 (293)
                        .++|+.|++++|.               +..+..  ..+++|+.|+++++. ++.+....   +..+++|++|+++++
T Consensus        98 --~~~L~~L~L~~N~---------------l~~~~~--~~l~~L~~L~L~~N~-l~~~~~~~---~~~l~~L~~L~Ls~N  154 (487)
T 3oja_A           98 --GPSIETLHAANNN---------------ISRVSC--SRGQGKKNIYLANNK-ITMLRDLD---EGCRSRVQYLDLKLN  154 (487)
T ss_dssp             --CTTCCEEECCSSC---------------CCCEEE--CCCSSCEEEECCSSC-CCSGGGBC---GGGGSSEEEEECTTS
T ss_pred             --CCCcCEEECcCCc---------------CCCCCc--cccCCCCEEECCCCC-CCCCCchh---hcCCCCCCEEECCCC
Confidence              2778888887661               111111  235677777777654 34332222   455677777777776


Q ss_pred             CCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceeccCCCccccCCCcc
Q 037794          164 ANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLW  243 (293)
Q Consensus       164 ~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~  243 (293)
                      .... ..|......+++|+.|++.++ .++.++..           ..+++|++|+++++ .++.++   ..+..+++|+
T Consensus       155 ~l~~-~~~~~l~~~l~~L~~L~Ls~N-~l~~~~~~-----------~~l~~L~~L~Ls~N-~l~~~~---~~~~~l~~L~  217 (487)
T 3oja_A          155 EIDT-VNFAELAASSDTLEHLNLQYN-FIYDVKGQ-----------VVFAKLKTLDLSSN-KLAFMG---PEFQSAAGVT  217 (487)
T ss_dssp             CCCE-EEGGGGGGGTTTCCEEECTTS-CCCEEECC-----------CCCTTCCEEECCSS-CCCEEC---GGGGGGTTCS
T ss_pred             CCCC-cChHHHhhhCCcccEEecCCC-cccccccc-----------ccCCCCCEEECCCC-CCCCCC---HhHcCCCCcc
Confidence            5433 224443346777777777774 34444311           02367777777764 455554   3456667777


Q ss_pred             eEeeecCCCccccccccchh
Q 037794          244 SLTIENCPDMETFISNSVLH  263 (293)
Q Consensus       244 ~L~i~~C~~L~~l~p~~l~~  263 (293)
                      .|+++++ +++.+ |..++.
T Consensus       218 ~L~Ls~N-~l~~l-p~~l~~  235 (487)
T 3oja_A          218 WISLRNN-KLVLI-EKALRF  235 (487)
T ss_dssp             EEECTTS-CCCEE-CTTCCC
T ss_pred             EEEecCC-cCccc-chhhcc
Confidence            7777775 56665 654433

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.46  E-value=9.7e-13  Score=128.94  Aligned_cols=246  Identities=10%  Similarity=0.014  Sum_probs=114.8

Q ss_pred             CCCCCcceEeccccccceE--eccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCcccc
Q 037794            2 GIPNSLVNLNVSYCEKIEE--IIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTF   79 (293)
Q Consensus         2 g~l~~L~~L~l~~c~~l~~--i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l   79 (293)
                      +.+++|++|+++++..+..  +|...+.- ......+++|+.|+++++. +..++.......+++|+.|+++++. +..+
T Consensus       512 ~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L-~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~l  588 (876)
T 4ecn_A          512 YDLPELQSLNIACNRGISAAQLKADWTRL-ADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNK-VRHL  588 (876)
T ss_dssp             GGCSSCCEEECTTCTTSCHHHHHHHHHHH-HHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSC-CCBC
T ss_pred             hCCCCCCEEECcCCCCcccccchHHHHhh-hhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCC-cccc
Confidence            4567777888877753442  44322110 0011124466666666653 2344431114456666666666653 3355


Q ss_pred             ccCccCCCCeeEEEecccccccccc--ccCc-------cc-hhhhhhhhhhhccC--CCccEEEecCCCCceEecc--CC
Q 037794           80 SQGIVSTPKLHEVQVSKKEEDELHH--WEGN-------KL-NSTIQKRYEEMIGF--RDIERLQLSHFPRLKEIWH--GQ  145 (293)
Q Consensus        80 p~~~~~~~~L~~L~l~~c~~~~~~~--~~~~-------~~-~~~~~~l~~~~~~~--~~L~~L~l~~~~~l~~~~~--~~  145 (293)
                      | .+..+++|+.|.++++.-. ...  +.+.       .+ +..+..++..+...  ++|+.|+++++.-...++.  ..
T Consensus       589 p-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~  666 (876)
T 4ecn_A          589 E-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCS  666 (876)
T ss_dssp             C-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSC
T ss_pred             h-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhh
Confidence            5 5555666666666654100 000  0000       00 00011122212222  2355666555432111110  00


Q ss_pred             CCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCC
Q 037794          146 ALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPK  225 (293)
Q Consensus       146 ~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~  225 (293)
                       ......++|+.|++++|... . +|...+..+++|+.|++.++ .++.++... ...... ...-+++|++|+++++ +
T Consensus       667 -l~~~~~~~L~~L~Ls~N~L~-~-lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~-~~~~~~-~l~nl~~L~~L~Ls~N-~  739 (876)
T 4ecn_A          667 -MDDYKGINASTVTLSYNEIQ-K-FPTELFATGSPISTIILSNN-LMTSIPENS-LKPKDG-NYKNTYLLTTIDLRFN-K  739 (876)
T ss_dssp             -TTTCCCCCEEEEECCSSCCC-S-CCHHHHHTTCCCSEEECCSC-CCSCCCTTS-SSCTTS-CCTTGGGCCEEECCSS-C
T ss_pred             -hccccCCCcCEEEccCCcCC-c-cCHHHHccCCCCCEEECCCC-cCCccChHH-hccccc-cccccCCccEEECCCC-C
Confidence             00112347888888877644 3 47776777888888888884 455554211 000000 0000136666666664 4


Q ss_pred             CceeccCCCccc--cCCCcceEeeecCCCccccccccchhh
Q 037794          226 LKRFCNFTGNII--EMPMLWSLTIENCPDMETFISNSVLHV  264 (293)
Q Consensus       226 l~~~~~~~~~~~--~l~~L~~L~i~~C~~L~~l~p~~l~~l  264 (293)
                      ++.++   ..+.  .+++|+.|++++| +++.+ |.++..+
T Consensus       740 L~~lp---~~l~~~~l~~L~~L~Ls~N-~L~~l-p~~l~~L  775 (876)
T 4ecn_A          740 LTSLS---DDFRATTLPYLSNMDVSYN-CFSSF-PTQPLNS  775 (876)
T ss_dssp             CCCCC---GGGSTTTCTTCCEEECCSS-CCSSC-CCGGGGC
T ss_pred             Cccch---HHhhhccCCCcCEEEeCCC-CCCcc-chhhhcC
Confidence            54443   3333  5666666666665 45555 5444433

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.46  E-value=1.7e-12  Score=119.05  Aligned_cols=209  Identities=14%  Similarity=0.231  Sum_probs=97.9

Q ss_pred             CCCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccC
Q 037794            3 IPNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQG   82 (293)
Q Consensus         3 ~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~   82 (293)
                      .+++|++|++++| .++.++. ..        .+++|++|+++++. +...+.   ...+++|++|++++| .++.++. 
T Consensus        66 ~l~~L~~L~Ls~n-~l~~~~~-~~--------~l~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~L~~n-~l~~~~~-  129 (466)
T 1o6v_A           66 YLNNLTQINFSNN-QLTDITP-LK--------NLTKLVDILMNNNQ-IADITP---LANLTNLTGLTLFNN-QITDIDP-  129 (466)
T ss_dssp             GCTTCCEEECCSS-CCCCCGG-GT--------TCTTCCEEECCSSC-CCCCGG---GTTCTTCCEEECCSS-CCCCCGG-
T ss_pred             hhcCCCEEECCCC-ccCCchh-hh--------ccccCCEEECCCCc-cccChh---hcCCCCCCEEECCCC-CCCCChH-
Confidence            3455555665554 3444332 11        25566666665543 222221   335666666666665 3444433 


Q ss_pred             ccCCCCeeEEEeccccccccccccCc------cchhhhhhhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCcc
Q 037794           83 IVSTPKLHEVQVSKKEEDELHHWEGN------KLNSTIQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLF  156 (293)
Q Consensus        83 ~~~~~~L~~L~l~~c~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~  156 (293)
                      +..+++|+.|++++|.-.....+.+.      .+......+ ..+..+++|+.|+++++. +..++     .+..+++|+
T Consensus       130 ~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~-----~l~~l~~L~  202 (466)
T 1o6v_A          130 LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDL-KPLANLTTLERLDISSNK-VSDIS-----VLAKLTNLE  202 (466)
T ss_dssp             GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCC-GGGTTCTTCCEEECCSSC-CCCCG-----GGGGCTTCS
T ss_pred             HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCc-hhhccCCCCCEEECcCCc-CCCCh-----hhccCCCCC
Confidence            55666666666665511000000000      000000000 113344555555555533 22221     133445566


Q ss_pred             EEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceeccCCCcc
Q 037794          157 KLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNI  236 (293)
Q Consensus       157 ~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~  236 (293)
                      +|++++|.... . +.  +..+++|++|++.+| .++.+..   +.        .+++|++|++.++ .++.+    ..+
T Consensus       203 ~L~l~~n~l~~-~-~~--~~~l~~L~~L~l~~n-~l~~~~~---l~--------~l~~L~~L~l~~n-~l~~~----~~~  261 (466)
T 1o6v_A          203 SLIATNNQISD-I-TP--LGILTNLDELSLNGN-QLKDIGT---LA--------SLTNLTDLDLANN-QISNL----APL  261 (466)
T ss_dssp             EEECCSSCCCC-C-GG--GGGCTTCCEEECCSS-CCCCCGG---GG--------GCTTCSEEECCSS-CCCCC----GGG
T ss_pred             EEEecCCcccc-c-cc--ccccCCCCEEECCCC-Ccccchh---hh--------cCCCCCEEECCCC-ccccc----hhh
Confidence            66665554222 1 11  344566666666653 2333211   11        2377777777775 34443    235


Q ss_pred             ccCCCcceEeeecCCCcccc
Q 037794          237 IEMPMLWSLTIENCPDMETF  256 (293)
Q Consensus       237 ~~l~~L~~L~i~~C~~L~~l  256 (293)
                      ..+++|++|++++| +++.+
T Consensus       262 ~~l~~L~~L~l~~n-~l~~~  280 (466)
T 1o6v_A          262 SGLTKLTELKLGAN-QISNI  280 (466)
T ss_dssp             TTCTTCSEEECCSS-CCCCC
T ss_pred             hcCCCCCEEECCCC-ccCcc
Confidence            67788888888877 56665

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.46  E-value=1.4e-13  Score=128.67  Aligned_cols=35  Identities=14%  Similarity=0.364  Sum_probs=20.8

Q ss_pred             CccEEEeccCCCCCccCChhHHhccCCCCeEEecCcc
Q 037794          154 NLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCD  190 (293)
Q Consensus       154 ~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~  190 (293)
                      +|++|+++++. +.. +|...++.+++|++|++.++.
T Consensus       311 ~L~~L~l~~n~-l~~-ip~~~~~~l~~L~~L~Ls~N~  345 (549)
T 2z81_A          311 KVKRITVENSK-VFL-VPCSFSQHLKSLEFLDLSENL  345 (549)
T ss_dssp             TCCEEEEESSC-CCC-CCHHHHHHCTTCCEEECCSSC
T ss_pred             cceEEEeccCc-ccc-CCHHHHhcCccccEEEccCCc
Confidence            34455554443 232 366555678888888888754

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.45  E-value=1.1e-12  Score=112.44  Aligned_cols=184  Identities=18%  Similarity=0.142  Sum_probs=132.1

Q ss_pred             CCCCCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccc
Q 037794            1 VGIPNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFS   80 (293)
Q Consensus         1 ~g~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp   80 (293)
                      ++.+++|++|+++++ .++.+....       ...+++|++|+++++..+..+... ....+++|++|+++++.--...|
T Consensus        52 ~~~~~~L~~L~l~~n-~l~~~~~~~-------~~~l~~L~~L~l~~n~~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~  122 (285)
T 1ozn_A           52 FRACRNLTILWLHSN-VLARIDAAA-------FTGLALLEQLDLSDNAQLRSVDPA-TFHGLGRLHTLHLDRCGLQELGP  122 (285)
T ss_dssp             TTTCTTCCEEECCSS-CCCEECTTT-------TTTCTTCCEEECCSCTTCCCCCTT-TTTTCTTCCEEECTTSCCCCCCT
T ss_pred             cccCCCCCEEECCCC-ccceeCHhh-------cCCccCCCEEeCCCCCCccccCHH-HhcCCcCCCEEECCCCcCCEECH
Confidence            357899999999997 666664332       223899999999998767666433 24578999999999975333335


Q ss_pred             cCccCCCCeeEEEeccccccccccccCccchhhhhhhh-hhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEE
Q 037794           81 QGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRY-EEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLV  159 (293)
Q Consensus        81 ~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~  159 (293)
                      ..+..+++|+.|.++++               .+..+. ..+..+++|+.|+++++ .++.++...   +..+++|++|+
T Consensus       123 ~~~~~l~~L~~L~l~~n---------------~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~---~~~l~~L~~L~  183 (285)
T 1ozn_A          123 GLFRGLAALQYLYLQDN---------------ALQALPDDTFRDLGNLTHLFLHGN-RISSVPERA---FRGLHSLDRLL  183 (285)
T ss_dssp             TTTTTCTTCCEEECCSS---------------CCCCCCTTTTTTCTTCCEEECCSS-CCCEECTTT---TTTCTTCCEEE
T ss_pred             hHhhCCcCCCEEECCCC---------------cccccCHhHhccCCCccEEECCCC-cccccCHHH---hcCccccCEEE
Confidence            66788999999999976               111222 22467899999999985 477766544   55789999999


Q ss_pred             eccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCC
Q 037794          160 VDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLP  224 (293)
Q Consensus       160 i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~  224 (293)
                      ++++.. ....+ ..+.++++|+.|++.++ .++.++. +.+.        .+++|++|++.+.+
T Consensus       184 l~~n~l-~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~--------~l~~L~~L~l~~N~  236 (285)
T 1ozn_A          184 LHQNRV-AHVHP-HAFRDLGRLMTLYLFAN-NLSALPT-EALA--------PLRALQYLRLNDNP  236 (285)
T ss_dssp             CCSSCC-CEECT-TTTTTCTTCCEEECCSS-CCSCCCH-HHHT--------TCTTCCEEECCSSC
T ss_pred             CCCCcc-cccCH-hHccCcccccEeeCCCC-cCCcCCH-HHcc--------cCcccCEEeccCCC
Confidence            999874 44334 34788999999999995 5555542 1122        24899999999864

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.45  E-value=4.3e-13  Score=116.71  Aligned_cols=16  Identities=13%  Similarity=0.092  Sum_probs=7.6

Q ss_pred             CCcceEeeecCCCcccc
Q 037794          240 PMLWSLTIENCPDMETF  256 (293)
Q Consensus       240 ~~L~~L~i~~C~~L~~l  256 (293)
                      ++|++|+++++ +++.+
T Consensus       274 ~~L~~L~Ls~N-~l~~~  289 (312)
T 1wwl_A          274 AKLSVLDLSYN-RLDRN  289 (312)
T ss_dssp             SEEEEEECCSS-CCCSC
T ss_pred             CCceEEECCCC-CCCCC
Confidence            44555555544 34444

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.44  E-value=3.7e-12  Score=122.08  Aligned_cols=37  Identities=14%  Similarity=-0.006  Sum_probs=23.2

Q ss_pred             cCCCcceEeEcCCCCccccccCccCCCCeeEEEeccc
Q 037794           61 EFPSLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKK   97 (293)
Q Consensus        61 ~~~~L~~L~i~~c~~l~~lp~~~~~~~~L~~L~l~~c   97 (293)
                      .+++|++|+++++.--...+..+..+++|+.|++++|
T Consensus       327 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n  363 (680)
T 1ziw_A          327 WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNS  363 (680)
T ss_dssp             TCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTC
T ss_pred             cCCCCCEEECCCCccCCCChhHhccccCCcEEECCCC
Confidence            5667777777765432233344567777888877765

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.44  E-value=2.1e-12  Score=122.12  Aligned_cols=90  Identities=16%  Similarity=0.116  Sum_probs=64.0

Q ss_pred             cccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCce
Q 037794          149 VSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKR  228 (293)
Q Consensus       149 ~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~  228 (293)
                      +..+++|++|+++++.... ..|. .+..+++|+.|++.+ ..++.++...          ..+++|+.|+++++ .++.
T Consensus       250 l~~l~~L~~L~Ls~N~l~~-~~~~-~~~~l~~L~~L~Ls~-N~l~~l~~~~----------~~l~~L~~L~Ls~N-~l~~  315 (597)
T 3oja_B          250 LLNYPGLVEVDLSYNELEK-IMYH-PFVKMQRLERLYISN-NRLVALNLYG----------QPIPTLKVLDLSHN-HLLH  315 (597)
T ss_dssp             GGGCTTCSEEECCSSCCCE-EESG-GGTTCSSCCEEECTT-SCCCEEECSS----------SCCTTCCEEECCSS-CCCC
T ss_pred             hccCCCCCEEECCCCccCC-CCHH-HhcCccCCCEEECCC-CCCCCCCccc----------ccCCCCcEEECCCC-CCCc
Confidence            4567899999999886444 3344 478899999999998 4565554211          12488999999886 4655


Q ss_pred             eccCCCccccCCCcceEeeecCCCcccc
Q 037794          229 FCNFTGNIIEMPMLWSLTIENCPDMETF  256 (293)
Q Consensus       229 ~~~~~~~~~~l~~L~~L~i~~C~~L~~l  256 (293)
                      ++   ..+..+++|+.|++++| +++.+
T Consensus       316 i~---~~~~~l~~L~~L~L~~N-~l~~~  339 (597)
T 3oja_B          316 VE---RNQPQFDRLENLYLDHN-SIVTL  339 (597)
T ss_dssp             CG---GGHHHHTTCSEEECCSS-CCCCC
T ss_pred             cC---cccccCCCCCEEECCCC-CCCCc
Confidence            54   45677888888888887 46665

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.44  E-value=1e-12  Score=115.18  Aligned_cols=218  Identities=13%  Similarity=0.186  Sum_probs=127.3

Q ss_pred             CcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCcccc-ccCcc
Q 037794            6 SLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTF-SQGIV   84 (293)
Q Consensus         6 ~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l-p~~~~   84 (293)
                      +++.++++++ .++.+|...          .++|+.|+++++. +..++.. ....+++|++|++++|. ++.+ |..+.
T Consensus        34 ~l~~l~~~~~-~l~~ip~~~----------~~~l~~L~l~~n~-i~~~~~~-~~~~l~~L~~L~L~~n~-l~~~~~~~~~   99 (332)
T 2ft3_A           34 HLRVVQCSDL-GLKAVPKEI----------SPDTTLLDLQNND-ISELRKD-DFKGLQHLYALVLVNNK-ISKIHEKAFS   99 (332)
T ss_dssp             ETTEEECCSS-CCSSCCSCC----------CTTCCEEECCSSC-CCEECTT-TTTTCTTCCEEECCSSC-CCEECGGGST
T ss_pred             cCCEEECCCC-CccccCCCC----------CCCCeEEECCCCc-CCccCHh-HhhCCCCCcEEECCCCc-cCccCHhHhh
Confidence            4566666654 455555432          4678888887764 4444332 14567888888888764 4444 56667


Q ss_pred             CCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCC
Q 037794           85 STPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCA  164 (293)
Q Consensus        85 ~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~  164 (293)
                      .+++|+.|+++++               .+..++...  +++|++|+++++. ++.++...   +..+++|++|+++++.
T Consensus       100 ~l~~L~~L~L~~n---------------~l~~l~~~~--~~~L~~L~l~~n~-i~~~~~~~---~~~l~~L~~L~l~~n~  158 (332)
T 2ft3_A          100 PLRKLQKLYISKN---------------HLVEIPPNL--PSSLVELRIHDNR-IRKVPKGV---FSGLRNMNCIEMGGNP  158 (332)
T ss_dssp             TCTTCCEEECCSS---------------CCCSCCSSC--CTTCCEEECCSSC-CCCCCSGG---GSSCSSCCEEECCSCC
T ss_pred             CcCCCCEEECCCC---------------cCCccCccc--cccCCEEECCCCc-cCccCHhH---hCCCccCCEEECCCCc
Confidence            7888888888765               111222221  2688888887753 45444332   4567888888888776


Q ss_pred             CCCccCChhHHhccCCCCeEEecCccccccccccc--cccc-------ccc---cCCCCCCcccEEecCCCCCCceeccC
Q 037794          165 NMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLE--ELNA-------DKE---HIGPLFPRLFILRLIDLPKLKRFCNF  232 (293)
Q Consensus       165 ~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~--~~~~-------~~~---~~~~~f~~L~~L~l~~~~~l~~~~~~  232 (293)
                      .-..-+....+..+ +|+.|++.++ .++.++..-  ....       ...   .....+++|++|++.++ .++.+.. 
T Consensus       159 l~~~~~~~~~~~~l-~L~~L~l~~n-~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N-~l~~~~~-  234 (332)
T 2ft3_A          159 LENSGFEPGAFDGL-KLNYLRISEA-KLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHN-QIRMIEN-  234 (332)
T ss_dssp             CBGGGSCTTSSCSC-CCSCCBCCSS-BCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSS-CCCCCCT-
T ss_pred             cccCCCCcccccCC-ccCEEECcCC-CCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC-cCCcCCh-
Confidence            43211122334444 7777777763 233333100  0000       000   01112378888888875 5665543 


Q ss_pred             CCccccCCCcceEeeecCCCccccccccchhhc
Q 037794          233 TGNIIEMPMLWSLTIENCPDMETFISNSVLHVT  265 (293)
Q Consensus       233 ~~~~~~l~~L~~L~i~~C~~L~~l~p~~l~~l~  265 (293)
                       ..+..+++|++|++++| +++.+ |.+++.+.
T Consensus       235 -~~~~~l~~L~~L~L~~N-~l~~l-p~~l~~l~  264 (332)
T 2ft3_A          235 -GSLSFLPTLRELHLDNN-KLSRV-PAGLPDLK  264 (332)
T ss_dssp             -TGGGGCTTCCEEECCSS-CCCBC-CTTGGGCT
T ss_pred             -hHhhCCCCCCEEECCCC-cCeec-ChhhhcCc
Confidence             46778899999999998 68888 87766554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.44  E-value=3.6e-12  Score=116.97  Aligned_cols=196  Identities=17%  Similarity=0.244  Sum_probs=124.0

Q ss_pred             CCCCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCcccccc
Q 037794            2 GIPNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQ   81 (293)
Q Consensus         2 g~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~   81 (293)
                      +.+++|++|++++| .+..++. ..        .+++|++|+++++. +..++.   ...+++|++|++++|. +..++.
T Consensus        87 ~~l~~L~~L~l~~n-~l~~~~~-~~--------~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~l~~n~-l~~~~~  151 (466)
T 1o6v_A           87 KNLTKLVDILMNNN-QIADITP-LA--------NLTNLTGLTLFNNQ-ITDIDP---LKNLTNLNRLELSSNT-ISDISA  151 (466)
T ss_dssp             TTCTTCCEEECCSS-CCCCCGG-GT--------TCTTCCEEECCSSC-CCCCGG---GTTCTTCSEEEEEEEE-ECCCGG
T ss_pred             hccccCCEEECCCC-ccccChh-hc--------CCCCCCEEECCCCC-CCCChH---HcCCCCCCEEECCCCc-cCCChh
Confidence            56777888888776 4444443 11        26667777776652 333322   3356666666666542 333321


Q ss_pred             --------------------CccCCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCCCCceEe
Q 037794           82 --------------------GIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRLKEI  141 (293)
Q Consensus        82 --------------------~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~  141 (293)
                                          .+..+++|+.|++++|               .+..+ ..+..+++|+.|+++++. +..+
T Consensus       152 ~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n---------------~l~~~-~~l~~l~~L~~L~l~~n~-l~~~  214 (466)
T 1o6v_A          152 LSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSN---------------KVSDI-SVLAKLTNLESLIATNNQ-ISDI  214 (466)
T ss_dssp             GTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSS---------------CCCCC-GGGGGCTTCSEEECCSSC-CCCC
T ss_pred             hccCCcccEeecCCcccCchhhccCCCCCEEECcCC---------------cCCCC-hhhccCCCCCEEEecCCc-cccc
Confidence                                1334455555555544               01111 235678999999999865 3332


Q ss_pred             ccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecC
Q 037794          142 WHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLI  221 (293)
Q Consensus       142 ~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~  221 (293)
                      .     +...+++|++|++++|.. .++ +  .+..+++|+.|++.+|. +..++.   ..        .+++|++|++.
T Consensus       215 ~-----~~~~l~~L~~L~l~~n~l-~~~-~--~l~~l~~L~~L~l~~n~-l~~~~~---~~--------~l~~L~~L~l~  273 (466)
T 1o6v_A          215 T-----PLGILTNLDELSLNGNQL-KDI-G--TLASLTNLTDLDLANNQ-ISNLAP---LS--------GLTKLTELKLG  273 (466)
T ss_dssp             G-----GGGGCTTCCEEECCSSCC-CCC-G--GGGGCTTCSEEECCSSC-CCCCGG---GT--------TCTTCSEEECC
T ss_pred             c-----cccccCCCCEEECCCCCc-ccc-h--hhhcCCCCCEEECCCCc-cccchh---hh--------cCCCCCEEECC
Confidence            2     255679999999999864 332 3  37789999999999964 444332   11        34999999999


Q ss_pred             CCCCCceeccCCCccccCCCcceEeeecCCCcccc
Q 037794          222 DLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETF  256 (293)
Q Consensus       222 ~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l  256 (293)
                      ++ .++.+.    .+..+++|++|++++| +++.+
T Consensus       274 ~n-~l~~~~----~~~~l~~L~~L~L~~n-~l~~~  302 (466)
T 1o6v_A          274 AN-QISNIS----PLAGLTALTNLELNEN-QLEDI  302 (466)
T ss_dssp             SS-CCCCCG----GGTTCTTCSEEECCSS-CCSCC
T ss_pred             CC-ccCccc----cccCCCccCeEEcCCC-cccCc
Confidence            86 566552    3678999999999998 67777

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.43  E-value=1.4e-12  Score=125.01  Aligned_cols=212  Identities=16%  Similarity=0.144  Sum_probs=107.2

Q ss_pred             CCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccCcc
Q 037794            5 NSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGIV   84 (293)
Q Consensus         5 ~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~   84 (293)
                      ++|++|++++| .+..++...       ...+++|+.|+++++.....++.. ....+++|+.|++++|......+..+.
T Consensus       381 ~~L~~L~L~~n-~l~~~~~~~-------~~~l~~L~~L~L~~N~l~~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~  451 (680)
T 1ziw_A          381 SPLHILNLTKN-KISKIESDA-------FSWLGHLEVLDLGLNEIGQELTGQ-EWRGLENIFEIYLSYNKYLQLTRNSFA  451 (680)
T ss_dssp             SCCCEEECTTS-CCCEECTTT-------TTTCTTCCEEECCSSCCEEECCSG-GGTTCTTCCEEECCSCSEEECCTTTTT
T ss_pred             CcCceEECCCC-CCCeEChhh-------hhCCCCCCEEeCCCCcCccccCcc-cccCcccccEEecCCCCcceeChhhhh
Confidence            57888888887 455544322       122778888888776543333321 234677788888877653323334556


Q ss_pred             CCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCC
Q 037794           85 STPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCA  164 (293)
Q Consensus        85 ~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~  164 (293)
                      .+++|+.|.+.++.-            ......+..+..+++|+.|+++++. ++.++...   +..+++|++|+++++.
T Consensus       452 ~~~~L~~L~l~~n~l------------~~~~~~p~~~~~l~~L~~L~Ls~N~-l~~i~~~~---~~~l~~L~~L~Ls~N~  515 (680)
T 1ziw_A          452 LVPSLQRLMLRRVAL------------KNVDSSPSPFQPLRNLTILDLSNNN-IANINDDM---LEGLEKLEILDLQHNN  515 (680)
T ss_dssp             TCTTCCEEECTTSCC------------BCTTCSSCTTTTCTTCCEEECCSSC-CCCCCTTT---TTTCTTCCEEECCSSC
T ss_pred             cCcccccchhccccc------------cccccCCcccccCCCCCEEECCCCC-CCcCChhh---hccccccCEEeCCCCC
Confidence            677777777776510            0011222333455666666666532 44333322   3345566666665554


Q ss_pred             CCCccC-------ChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceeccCCCccc
Q 037794          165 NMSSAI-------PANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNII  237 (293)
Q Consensus       165 ~l~~~~-------p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~  237 (293)
                      .. .+.       +...+.++++|+.|++.++ .++.++. +.+..       + ++|+.|++++ .+++.++.  ..+.
T Consensus       516 l~-~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~-~~~~~-------l-~~L~~L~Ls~-N~l~~l~~--~~~~  581 (680)
T 1ziw_A          516 LA-RLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEIPV-EVFKD-------L-FELKIIDLGL-NNLNTLPA--SVFN  581 (680)
T ss_dssp             CG-GGGSTTSTTSCCCTTTTCTTCCEEECCSS-CCCCCCT-TTTTT-------C-TTCCEEECCS-SCCCCCCT--TTTT
T ss_pred             cc-ccchhhccCCcchhhcCCCCCCEEECCCC-CCCCCCH-HHccc-------c-cCcceeECCC-CCCCcCCH--hHhC
Confidence            22 110       1112445566666666652 3443331 11111       2 5555555544 24444432  3334


Q ss_pred             cCCCcceEeeecCCCcccc
Q 037794          238 EMPMLWSLTIENCPDMETF  256 (293)
Q Consensus       238 ~l~~L~~L~i~~C~~L~~l  256 (293)
                      .+++|+.|+++++ +++.+
T Consensus       582 ~l~~L~~L~L~~N-~l~~~  599 (680)
T 1ziw_A          582 NQVSLKSLNLQKN-LITSV  599 (680)
T ss_dssp             TCTTCCEEECTTS-CCCBC
T ss_pred             CCCCCCEEECCCC-cCCcc
Confidence            5555555555554 45554

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.43  E-value=1.2e-12  Score=119.96  Aligned_cols=79  Identities=16%  Similarity=0.133  Sum_probs=48.6

Q ss_pred             CCCCCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccc
Q 037794            1 VGIPNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFS   80 (293)
Q Consensus         1 ~g~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp   80 (293)
                      ++.+++|++|+++++ .++.++  .+        .+++|++|+++++. ++.++    ...+++|+.|++++|..++.++
T Consensus       102 ~~~l~~L~~L~L~~N-~l~~l~--~~--------~l~~L~~L~l~~N~-l~~l~----l~~l~~L~~L~l~~n~~~~~~~  165 (457)
T 3bz5_A          102 VTPLTKLTYLNCDTN-KLTKLD--VS--------QNPLLTYLNCARNT-LTEID----VSHNTQLTELDCHLNKKITKLD  165 (457)
T ss_dssp             CTTCTTCCEEECCSS-CCSCCC--CT--------TCTTCCEEECTTSC-CSCCC----CTTCTTCCEEECTTCSCCCCCC
T ss_pred             cCCCCcCCEEECCCC-cCCeec--CC--------CCCcCCEEECCCCc-cceec----cccCCcCCEEECCCCCcccccc
Confidence            467888999999887 555554  11        26777777776653 33333    2256667777776665555442


Q ss_pred             cCccCCCCeeEEEeccc
Q 037794           81 QGIVSTPKLHEVQVSKK   97 (293)
Q Consensus        81 ~~~~~~~~L~~L~l~~c   97 (293)
                        +..+++|+.|+++++
T Consensus       166 --~~~l~~L~~L~ls~n  180 (457)
T 3bz5_A          166 --VTPQTQLTTLDCSFN  180 (457)
T ss_dssp             --CTTCTTCCEEECCSS
T ss_pred             --cccCCcCCEEECCCC
Confidence              445666666666654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.42  E-value=7.9e-12  Score=122.85  Aligned_cols=91  Identities=14%  Similarity=0.137  Sum_probs=48.7

Q ss_pred             ccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCcee
Q 037794          150 SFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRF  229 (293)
Q Consensus       150 ~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~  229 (293)
                      ..+++|+.|+++++... .+ +...+.++++|++|++.++ .++.+.. ..+.        .+++|++|++.++ .++.+
T Consensus       287 ~~l~~L~~L~L~~n~i~-~~-~~~~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~--------~l~~L~~L~L~~N-~i~~~  353 (844)
T 3j0a_A          287 ETLKDLKVLNLAYNKIN-KI-ADEAFYGLDNLQVLNLSYN-LLGELYS-SNFY--------GLPKVAYIDLQKN-HIAII  353 (844)
T ss_dssp             SSCCCCCEEEEESCCCC-EE-CTTTTTTCSSCCEEEEESC-CCSCCCS-CSCS--------SCTTCCEEECCSC-CCCCC
T ss_pred             hcCCCCCEEECCCCcCC-CC-ChHHhcCCCCCCEEECCCC-CCCccCH-HHhc--------CCCCCCEEECCCC-CCCcc
Confidence            34566666666655432 22 2233555666666666663 2333211 1111        2367777777775 45555


Q ss_pred             ccCCCccccCCCcceEeeecCCCcccc
Q 037794          230 CNFTGNIIEMPMLWSLTIENCPDMETF  256 (293)
Q Consensus       230 ~~~~~~~~~l~~L~~L~i~~C~~L~~l  256 (293)
                      ..  ..+..+++|++|+++++ +++.+
T Consensus       354 ~~--~~~~~l~~L~~L~Ls~N-~l~~i  377 (844)
T 3j0a_A          354 QD--QTFKFLEKLQTLDLRDN-ALTTI  377 (844)
T ss_dssp             CS--SCSCSCCCCCEEEEETC-CSCCC
T ss_pred             Ch--hhhcCCCCCCEEECCCC-CCCcc
Confidence            43  44566777777777775 45544

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.41  E-value=4.3e-12  Score=119.11  Aligned_cols=126  Identities=12%  Similarity=0.131  Sum_probs=73.6

Q ss_pred             ccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCCh--hHHhccCCCCeEEecCcccccc-cccc
Q 037794          122 IGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPA--NLLRCLSNLRWLEVRNCDSLEE-VLHL  198 (293)
Q Consensus       122 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~--~~~~~l~~L~~L~i~~c~~l~~-i~~~  198 (293)
                      ..+++|++|+++++. +.......   +..+++|++|+++++. ++.+ +.  ..+.++++|++|++.++. ++. ++..
T Consensus       350 ~~l~~L~~L~l~~n~-l~~~~~~~---~~~l~~L~~L~L~~N~-l~~~-~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~  422 (562)
T 3a79_B          350 PSPSSFTFLNFTQNV-FTDSVFQG---CSTLKRLQTLILQRNG-LKNF-FKVALMTKNMSSLETLDVSLNS-LNSHAYDR  422 (562)
T ss_dssp             SSCCCCCEEECCSSC-CCTTTTTT---CCSCSSCCEEECCSSC-CCBT-THHHHTTTTCTTCCEEECTTSC-CBSCCSSC
T ss_pred             cCCCCceEEECCCCc-cccchhhh---hcccCCCCEEECCCCC-cCCc-ccchhhhcCCCCCCEEECCCCc-CCCccChh
Confidence            567899999998864 33221122   4567888888888875 3332 32  236678888888888844 333 3310


Q ss_pred             --ccccc----------c-cccCCCCCCcccEEecCCCCCCceeccCCCccccCCCcceEeeecCCCcccccccc
Q 037794          199 --EELNA----------D-KEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNS  260 (293)
Q Consensus       199 --~~~~~----------~-~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~p~~  260 (293)
                        .+...          . ...+....++|++|+++++ .++.++   ..+..+++|++|+++++ +++.+ |..
T Consensus       423 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip---~~~~~l~~L~~L~L~~N-~l~~l-~~~  491 (562)
T 3a79_B          423 TCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIP---KDVTHLQALQELNVASN-QLKSV-PDG  491 (562)
T ss_dssp             CCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCC---TTTTSSCCCSEEECCSS-CCCCC-CTT
T ss_pred             hhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccC---hhhcCCCCCCEEECCCC-CCCCC-CHH
Confidence              00000          0 0001111147777777775 566554   34457778888888876 57777 655

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.40  E-value=7.3e-14  Score=121.60  Aligned_cols=214  Identities=15%  Similarity=0.110  Sum_probs=134.7

Q ss_pred             cceeeccccccccccccccccc-------cCCCcceEeEcCCCCccccccCc--cCCCCeeEEEeccccccccccccCcc
Q 037794           39 LKFLELDDLPRLTSFCLENYTL-------EFPSLERVFVTRCPNMKTFSQGI--VSTPKLHEVQVSKKEEDELHHWEGNK  109 (293)
Q Consensus        39 L~~L~l~~~~~l~~~~~~~~~~-------~~~~L~~L~i~~c~~l~~lp~~~--~~~~~L~~L~l~~c~~~~~~~~~~~~  109 (293)
                      |+.|+++++.. ..........       .+++|++|+++++.--..+|..+  ..+++|+.|+++++.           
T Consensus        65 L~~L~L~~n~l-~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-----------  132 (312)
T 1wwl_A           65 IKSLSLKRLTV-RAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-----------  132 (312)
T ss_dssp             HHHCCCCEEEE-EEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-----------
T ss_pred             Hhhcccccccc-cCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-----------
Confidence            77777776532 2221111121       58999999999985444677765  789999999999761           


Q ss_pred             chhhhhhhhhhhcc-----CCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCcc-CChh-HHhccCCCC
Q 037794          110 LNSTIQKRYEEMIG-----FRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSA-IPAN-LLRCLSNLR  182 (293)
Q Consensus       110 ~~~~~~~l~~~~~~-----~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~-~p~~-~~~~l~~L~  182 (293)
                          +...+..+..     +++|++|+++++. +..++...   +..+++|++|+++++...... ++.. .+..+++|+
T Consensus       133 ----l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~---~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~  204 (312)
T 1wwl_A          133 ----WATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQ---VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQ  204 (312)
T ss_dssp             ----CSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTT---CCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCC
T ss_pred             ----CcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHH---hccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCC
Confidence                1111111122     3899999999865 55554433   567899999999999855431 1222 127799999


Q ss_pred             eEEecCcccccccccc-cccccccccCCCCCCcccEEecCCCCCCceeccCCCccccCCCcceEeeecCCCccccccccc
Q 037794          183 WLEVRNCDSLEEVLHL-EELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSV  261 (293)
Q Consensus       183 ~L~i~~c~~l~~i~~~-~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~p~~l  261 (293)
                      +|++.++ .++.++.. .....       .+++|++|+++++ .++..... .....+++|++|++++| +++.+ |.++
T Consensus       205 ~L~L~~N-~l~~~~~~~~~~~~-------~l~~L~~L~Ls~N-~l~~~~~~-~~~~~l~~L~~L~Ls~N-~l~~i-p~~~  272 (312)
T 1wwl_A          205 VLALRNA-GMETPSGVCSALAA-------ARVQLQGLDLSHN-SLRDAAGA-PSCDWPSQLNSLNLSFT-GLKQV-PKGL  272 (312)
T ss_dssp             EEECTTS-CCCCHHHHHHHHHH-------TTCCCSEEECTTS-CCCSSCCC-SCCCCCTTCCEEECTTS-CCSSC-CSSC
T ss_pred             EEECCCC-cCcchHHHHHHHHh-------cCCCCCEEECCCC-cCCcccch-hhhhhcCCCCEEECCCC-ccChh-hhhc
Confidence            9999995 45533211 11111       2389999999986 46553311 24456799999999998 68888 6544


Q ss_pred             ----hhhccCCCCCccccccccccccc
Q 037794          262 ----LHVTTDNKEPQKLTSEENFLLAH  284 (293)
Q Consensus       262 ----~~l~~~~~~~~~l~~~~~~~~~~  284 (293)
                          +.+.........+..+..++.++
T Consensus       273 ~~~L~~L~Ls~N~l~~~p~~~~l~~L~  299 (312)
T 1wwl_A          273 PAKLSVLDLSYNRLDRNPSPDELPQVG  299 (312)
T ss_dssp             CSEEEEEECCSSCCCSCCCTTTSCEEE
T ss_pred             cCCceEEECCCCCCCCChhHhhCCCCC
Confidence                44444444444333344444443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.39  E-value=5.6e-12  Score=117.02  Aligned_cols=157  Identities=13%  Similarity=0.142  Sum_probs=87.0

Q ss_pred             cCCCcceEeEcCCCCccccccCccCCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCCCCceE
Q 037794           61 EFPSLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRLKE  140 (293)
Q Consensus        61 ~~~~L~~L~i~~c~~l~~lp~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~  140 (293)
                      .+++|++|++++|.--..+|..+..+++|+.|.++++            .-..+..++..+..+++|+.|+++++. +..
T Consensus       322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N------------~l~~l~~~~~~~~~l~~L~~L~Ls~N~-l~~  388 (520)
T 2z7x_B          322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMN------------QLKELSKIAEMTTQMKSLQQLDISQNS-VSY  388 (520)
T ss_dssp             SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSS------------CCCBHHHHHHHHTTCTTCCEEECCSSC-CBC
T ss_pred             hCCcccEEEeECCccChhhhhhhccCCCCCEEEccCC------------ccCccccchHHHhhCCCCCEEECCCCc-CCc
Confidence            4566666666665433335555566666666666654            101112334445667777777777654 333


Q ss_pred             -eccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEe
Q 037794          141 -IWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILR  219 (293)
Q Consensus       141 -~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~  219 (293)
                       ++.+.   +..+++|++|++++|...... +.. +.  ++|+.|++++| .++.++.  ++..       . ++|++|+
T Consensus       389 ~l~~~~---~~~l~~L~~L~Ls~N~l~~~~-~~~-l~--~~L~~L~Ls~N-~l~~ip~--~~~~-------l-~~L~~L~  450 (520)
T 2z7x_B          389 DEKKGD---CSWTKSLLSLNMSSNILTDTI-FRC-LP--PRIKVLDLHSN-KIKSIPK--QVVK-------L-EALQELN  450 (520)
T ss_dssp             CGGGCS---CCCCTTCCEEECCSSCCCGGG-GGS-CC--TTCCEEECCSS-CCCCCCG--GGGG-------C-TTCCEEE
T ss_pred             ccccch---hccCccCCEEECcCCCCCcch-hhh-hc--ccCCEEECCCC-cccccch--hhhc-------C-CCCCEEE
Confidence             44332   345567777777776543322 221 11  57777777774 4444442  1111       2 7777777


Q ss_pred             cCCCCCCceeccCCCccccCCCcceEeeecCC
Q 037794          220 LIDLPKLKRFCNFTGNIIEMPMLWSLTIENCP  251 (293)
Q Consensus       220 l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~  251 (293)
                      +.++ .++.++.  ..+..+++|++|++++++
T Consensus       451 L~~N-~l~~l~~--~~~~~l~~L~~L~l~~N~  479 (520)
T 2z7x_B          451 VASN-QLKSVPD--GIFDRLTSLQKIWLHTNP  479 (520)
T ss_dssp             CCSS-CCCCCCT--TTTTTCTTCCEEECCSSC
T ss_pred             CCCC-cCCccCH--HHhccCCcccEEECcCCC
Confidence            7775 5665543  235667777777777764

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.39  E-value=6.4e-12  Score=111.04  Aligned_cols=214  Identities=16%  Similarity=0.196  Sum_probs=147.8

Q ss_pred             CCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccc-cC
Q 037794            4 PNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFS-QG   82 (293)
Q Consensus         4 l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp-~~   82 (293)
                      ++++++|+++++ +++.++...-       ..+++|++|+++++...+.++.. ...++++++++.+.++.+++.++ ..
T Consensus        29 ~~~l~~L~Ls~N-~i~~i~~~~f-------~~l~~L~~L~Ls~N~i~~~i~~~-~f~~L~~l~~~l~~~~N~l~~l~~~~   99 (350)
T 4ay9_X           29 PRNAIELRFVLT-KLRVIQKGAF-------SGFGDLEKIEISQNDVLEVIEAD-VFSNLPKLHEIRIEKANNLLYINPEA   99 (350)
T ss_dssp             CTTCSEEEEESC-CCSEECTTSS-------TTCTTCCEEEEECCTTCCEECTT-SBCSCTTCCEEEEEEETTCCEECTTS
T ss_pred             CCCCCEEEccCC-cCCCcCHHHH-------cCCCCCCEEECcCCCCCCccChh-HhhcchhhhhhhcccCCcccccCchh
Confidence            468999999986 7888886431       23899999999998766655543 24578888888887788888875 45


Q ss_pred             ccCCCCeeEEEecccccccccc--ccCc-c-----c--hhhhhhhhhh-hcc-CCCccEEEecCCCCceEeccCCCCCcc
Q 037794           83 IVSTPKLHEVQVSKKEEDELHH--WEGN-K-----L--NSTIQKRYEE-MIG-FRDIERLQLSHFPRLKEIWHGQALPVS  150 (293)
Q Consensus        83 ~~~~~~L~~L~l~~c~~~~~~~--~~~~-~-----~--~~~~~~l~~~-~~~-~~~L~~L~l~~~~~l~~~~~~~~~~~~  150 (293)
                      +..+++|+.|.++++.-.....  ..+. .     +  +..+..++.. +.. ...++.|++++ +.++.++.+.    .
T Consensus       100 f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~-N~i~~i~~~~----f  174 (350)
T 4ay9_X          100 FQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK-NGIQEIHNSA----F  174 (350)
T ss_dssp             BCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS-SCCCEECTTS----S
T ss_pred             hhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc-ccccCCChhh----c
Confidence            6889999999998762111100  0000 0     0  0111122211 122 24577788877 4577776443    2


Q ss_pred             cCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceec
Q 037794          151 FFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFC  230 (293)
Q Consensus       151 ~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~  230 (293)
                      ...+|+++.+.++..++.+ |..++.++++|+.|++++ ..++.++.            ..|.+|+.|.+.++.+++.++
T Consensus       175 ~~~~L~~l~l~~~n~l~~i-~~~~f~~l~~L~~LdLs~-N~l~~lp~------------~~~~~L~~L~~l~~~~l~~lP  240 (350)
T 4ay9_X          175 NGTQLDELNLSDNNNLEEL-PNDVFHGASGPVILDISR-TRIHSLPS------------YGLENLKKLRARSTYNLKKLP  240 (350)
T ss_dssp             TTEEEEEEECTTCTTCCCC-CTTTTTTEECCSEEECTT-SCCCCCCS------------SSCTTCCEEECTTCTTCCCCC
T ss_pred             cccchhHHhhccCCcccCC-CHHHhccCcccchhhcCC-CCcCccCh------------hhhccchHhhhccCCCcCcCC
Confidence            3367899999888888875 777788999999999998 46777763            145889999999999998874


Q ss_pred             cCCCccccCCCcceEeeec
Q 037794          231 NFTGNIIEMPMLWSLTIEN  249 (293)
Q Consensus       231 ~~~~~~~~l~~L~~L~i~~  249 (293)
                          .+..+++|+.+++.+
T Consensus       241 ----~l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          241 ----TLEKLVALMEASLTY  255 (350)
T ss_dssp             ----CTTTCCSCCEEECSC
T ss_pred             ----CchhCcChhhCcCCC
Confidence                466889999998854

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.39  E-value=7.1e-12  Score=116.34  Aligned_cols=83  Identities=14%  Similarity=0.044  Sum_probs=47.9

Q ss_pred             CCCCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCcc-ccc
Q 037794            2 GIPNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMK-TFS   80 (293)
Q Consensus         2 g~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~-~lp   80 (293)
                      +.+++|++|+++++ .++.+++.       ....+++|++|+++++ .++.++..    .+++|++|+++++.-.. .+|
T Consensus        42 ~~l~~L~~L~Ls~n-~l~~~~~~-------~~~~l~~L~~L~Ls~N-~l~~lp~~----~l~~L~~L~L~~N~l~~~~~p  108 (520)
T 2z7x_B           42 LSLSKLRILIISHN-RIQYLDIS-------VFKFNQELEYLDLSHN-KLVKISCH----PTVNLKHLDLSFNAFDALPIC  108 (520)
T ss_dssp             TTCTTCCEEECCSS-CCCEEEGG-------GGTTCTTCCEEECCSS-CCCEEECC----CCCCCSEEECCSSCCSSCCCC
T ss_pred             cccccccEEecCCC-ccCCcChH-------HhhcccCCCEEecCCC-ceeecCcc----ccCCccEEeccCCccccccch
Confidence            45667777777766 34444321       1223677777777765 34445543    56777777777654322 245


Q ss_pred             cCccCCCCeeEEEeccc
Q 037794           81 QGIVSTPKLHEVQVSKK   97 (293)
Q Consensus        81 ~~~~~~~~L~~L~l~~c   97 (293)
                      ..+..+++|+.|+++++
T Consensus       109 ~~~~~l~~L~~L~L~~n  125 (520)
T 2z7x_B          109 KEFGNMSQLKFLGLSTT  125 (520)
T ss_dssp             GGGGGCTTCCEEEEEES
T ss_pred             hhhccCCcceEEEecCc
Confidence            55666666666666654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.38  E-value=5.1e-12  Score=111.70  Aligned_cols=197  Identities=17%  Similarity=0.154  Sum_probs=130.3

Q ss_pred             cceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccC-ccCCCCeeEEEec
Q 037794           17 KIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQG-IVSTPKLHEVQVS   95 (293)
Q Consensus        17 ~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~-~~~~~~L~~L~l~   95 (293)
                      +++++|...          .+++++|+++++ .++.++.. ...++++|++|+++++..++.+|.. +..+++++.+...
T Consensus        20 ~Lt~iP~~l----------~~~l~~L~Ls~N-~i~~i~~~-~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           20 KVTEIPSDL----------PRNAIELRFVLT-KLRVIQKG-AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TCCSCCTTC----------CTTCSEEEEESC-CCSEECTT-SSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CCCccCcCc----------CCCCCEEEccCC-cCCCcCHH-HHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            566776532          467999999886 46666653 2457899999999998766767643 4678887776555


Q ss_pred             cccccccccccCccchhhhhhhh-hhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhH
Q 037794           96 KKEEDELHHWEGNKLNSTIQKRY-EEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANL  174 (293)
Q Consensus        96 ~c~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~  174 (293)
                      ++              ..+..+. ..+..+++|+.|+++++. +..++...   .....++..+++.++..+..+ +...
T Consensus        88 ~~--------------N~l~~l~~~~f~~l~~L~~L~l~~n~-l~~~~~~~---~~~~~~l~~l~l~~~~~i~~l-~~~~  148 (350)
T 4ay9_X           88 KA--------------NNLLYINPEAFQNLPNLQYLLISNTG-IKHLPDVH---KIHSLQKVLLDIQDNINIHTI-ERNS  148 (350)
T ss_dssp             EE--------------TTCCEECTTSBCCCTTCCEEEEEEEC-CSSCCCCT---TCCBSSCEEEEEESCTTCCEE-CTTS
T ss_pred             cC--------------CcccccCchhhhhccccccccccccc-cccCCchh---hcccchhhhhhhccccccccc-cccc
Confidence            43              1222232 234678899999998753 44444322   233456778888888777765 5444


Q ss_pred             HhccC-CCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceeccCCCccccCCCcceEeeecCCCc
Q 037794          175 LRCLS-NLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDM  253 (293)
Q Consensus       175 ~~~l~-~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~~L  253 (293)
                      +.+++ .++.|++.+ ..++.++.  +...       . ++|++|.+.++..++.++.  +.+..+++|++|+++++ +|
T Consensus       149 f~~~~~~l~~L~L~~-N~i~~i~~--~~f~-------~-~~L~~l~l~~~n~l~~i~~--~~f~~l~~L~~LdLs~N-~l  214 (350)
T 4ay9_X          149 FVGLSFESVILWLNK-NGIQEIHN--SAFN-------G-TQLDELNLSDNNNLEELPN--DVFHGASGPVILDISRT-RI  214 (350)
T ss_dssp             STTSBSSCEEEECCS-SCCCEECT--TSST-------T-EEEEEEECTTCTTCCCCCT--TTTTTEECCSEEECTTS-CC
T ss_pred             hhhcchhhhhhcccc-ccccCCCh--hhcc-------c-cchhHHhhccCCcccCCCH--HHhccCcccchhhcCCC-Cc
Confidence            55554 577888887 56666652  1111       2 6788888887778887765  45677788888888887 68


Q ss_pred             cccccc
Q 037794          254 ETFISN  259 (293)
Q Consensus       254 ~~l~p~  259 (293)
                      +++ |.
T Consensus       215 ~~l-p~  219 (350)
T 4ay9_X          215 HSL-PS  219 (350)
T ss_dssp             CCC-CS
T ss_pred             Ccc-Ch
Confidence            887 64

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.38  E-value=5.9e-12  Score=107.32  Aligned_cols=177  Identities=16%  Similarity=0.198  Sum_probs=119.4

Q ss_pred             cccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccCccCCCCeeEEEeccccccccccccCccchhhh
Q 037794           35 AFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTI  114 (293)
Q Consensus        35 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~  114 (293)
                      .+++|+.|.+.++. +..++.   ...+++|+.|+++++. ++.++ .+..+++|+.|.+++|               .+
T Consensus        39 ~l~~L~~L~l~~~~-i~~~~~---l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~L~~n---------------~l   97 (272)
T 3rfs_A           39 ELNSIDQIIANNSD-IKSVQG---IQYLPNVRYLALGGNK-LHDIS-ALKELTNLTYLILTGN---------------QL   97 (272)
T ss_dssp             HHTTCCEEECTTSC-CCCCTT---GGGCTTCCEEECTTSC-CCCCG-GGTTCTTCCEEECTTS---------------CC
T ss_pred             cccceeeeeeCCCC-cccccc---cccCCCCcEEECCCCC-CCCch-hhcCCCCCCEEECCCC---------------cc
Confidence            37788888887763 333332   4478889999998864 55553 5677888999988876               11


Q ss_pred             hhhhh-hhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCccccc
Q 037794          115 QKRYE-EMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLE  193 (293)
Q Consensus       115 ~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~  193 (293)
                      ..+.. .+..+++|++|+++++. ++.++...   +..+++|++|++++|. +..+ +...+..+++|+.|++.+| .++
T Consensus        98 ~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~---~~~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L~l~~n-~l~  170 (272)
T 3rfs_A           98 QSLPNGVFDKLTNLKELVLVENQ-LQSLPDGV---FDKLTNLTYLNLAHNQ-LQSL-PKGVFDKLTNLTELDLSYN-QLQ  170 (272)
T ss_dssp             CCCCTTTTTTCTTCCEEECTTSC-CCCCCTTT---TTTCTTCCEEECCSSC-CCCC-CTTTTTTCTTCCEEECCSS-CCC
T ss_pred             CccChhHhcCCcCCCEEECCCCc-CCccCHHH---hccCCCCCEEECCCCc-cCcc-CHHHhccCccCCEEECCCC-CcC
Confidence            12221 23567889999998854 55444332   4567889999998885 4443 5555778899999999985 455


Q ss_pred             ccccccccccccccCCCCCCcccEEecCCCCCCceeccCCCccccCCCcceEeeecCC
Q 037794          194 EVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCP  251 (293)
Q Consensus       194 ~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~  251 (293)
                      .++. ..+.        .+++|++|++.++ .++.+..  ..+..+++|++|++++++
T Consensus       171 ~~~~-~~~~--------~l~~L~~L~L~~N-~l~~~~~--~~~~~l~~L~~L~l~~N~  216 (272)
T 3rfs_A          171 SLPE-GVFD--------KLTQLKDLRLYQN-QLKSVPD--GVFDRLTSLQYIWLHDNP  216 (272)
T ss_dssp             CCCT-TTTT--------TCTTCCEEECCSS-CCSCCCT--TTTTTCTTCCEEECCSSC
T ss_pred             ccCH-HHhc--------CCccCCEEECCCC-cCCccCH--HHHhCCcCCCEEEccCCC
Confidence            5442 1111        2388999999886 5666543  456788999999998864

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.37  E-value=9.4e-13  Score=114.79  Aligned_cols=195  Identities=14%  Similarity=0.084  Sum_probs=127.3

Q ss_pred             CCCCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCcccccc
Q 037794            2 GIPNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQ   81 (293)
Q Consensus         2 g~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~   81 (293)
                      +.+++|++|+++++ .+..++. ..        .+++|++|+++++. +..++      ..++|+.|+++++ .++.++.
T Consensus        55 ~~l~~L~~L~Ls~n-~l~~~~~-~~--------~l~~L~~L~Ls~n~-l~~l~------~~~~L~~L~l~~n-~l~~~~~  116 (317)
T 3o53_A           55 APFTKLELLNLSSN-VLYETLD-LE--------SLSTLRTLDLNNNY-VQELL------VGPSIETLHAANN-NISRVSC  116 (317)
T ss_dssp             TTCTTCCEEECTTS-CCEEEEE-ET--------TCTTCCEEECCSSE-EEEEE------ECTTCCEEECCSS-CCSEEEE
T ss_pred             hCCCcCCEEECCCC-cCCcchh-hh--------hcCCCCEEECcCCc-ccccc------CCCCcCEEECCCC-ccCCcCc
Confidence            57899999999997 4554443 22        38899999998874 44443      3488999999886 4555543


Q ss_pred             CccCCCCeeEEEeccccccccccccCccchhhhhhh-hhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEe
Q 037794           82 GIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKR-YEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVV  160 (293)
Q Consensus        82 ~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i  160 (293)
                        ..+++|+.|+++++               .+..+ ...+..+++|+.|+++++. +..+.... + ...+++|++|++
T Consensus       117 --~~~~~L~~L~l~~N---------------~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~-~-~~~l~~L~~L~L  176 (317)
T 3o53_A          117 --SRGQGKKNIYLANN---------------KITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAE-L-AASSDTLEHLNL  176 (317)
T ss_dssp             --CCCSSCEEEECCSS---------------CCCSGGGBCTGGGSSEEEEECTTSC-CCEEEGGG-G-GGGTTTCCEEEC
T ss_pred             --cccCCCCEEECCCC---------------CCCCccchhhhccCCCCEEECCCCC-CCcccHHH-H-hhccCcCCEEEC
Confidence              24678899988876               11111 1133557888888888854 55443322 1 135678888888


Q ss_pred             ccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceeccCCCccccCC
Q 037794          161 DDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMP  240 (293)
Q Consensus       161 ~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~  240 (293)
                      ++|.. ..+ +.  ...+++|++|++.++ .++.++.  .+..       . ++|++|++.++ .++.++   ..+..++
T Consensus       177 ~~N~l-~~~-~~--~~~l~~L~~L~Ls~N-~l~~l~~--~~~~-------l-~~L~~L~L~~N-~l~~l~---~~~~~l~  237 (317)
T 3o53_A          177 QYNFI-YDV-KG--QVVFAKLKTLDLSSN-KLAFMGP--EFQS-------A-AGVTWISLRNN-KLVLIE---KALRFSQ  237 (317)
T ss_dssp             TTSCC-CEE-EC--CCCCTTCCEEECCSS-CCCEECG--GGGG-------G-TTCSEEECTTS-CCCEEC---TTCCCCT
T ss_pred             CCCcC-ccc-cc--ccccccCCEEECCCC-cCCcchh--hhcc-------c-CcccEEECcCC-cccchh---hHhhcCC
Confidence            88763 332 32  234788888888884 4555542  1222       3 78888888885 677765   4567788


Q ss_pred             CcceEeeecCCCcc
Q 037794          241 MLWSLTIENCPDME  254 (293)
Q Consensus       241 ~L~~L~i~~C~~L~  254 (293)
                      +|+.|++++++ +.
T Consensus       238 ~L~~L~l~~N~-~~  250 (317)
T 3o53_A          238 NLEHFDLRGNG-FH  250 (317)
T ss_dssp             TCCEEECTTCC-CB
T ss_pred             CCCEEEccCCC-cc
Confidence            88888888874 44

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.36  E-value=9.7e-12  Score=107.08  Aligned_cols=186  Identities=18%  Similarity=0.147  Sum_probs=135.2

Q ss_pred             cccccceeeccccccccccccccccccCCCcceEeEcCCCCcccc-ccCccCCCCeeEEEeccccccccccccCccchhh
Q 037794           35 AFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTF-SQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNST  113 (293)
Q Consensus        35 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l-p~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~  113 (293)
                      .+++++.+++.+. .++.++..    -.++++.|+++++. ++.+ +..+..+++|+.|.++++               .
T Consensus         8 ~l~~l~~l~~~~~-~l~~ip~~----~~~~l~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~n---------------~   66 (290)
T 1p9a_G            8 KVASHLEVNCDKR-NLTALPPD----LPKDTTILHLSENL-LYTFSLATLMPYTRLTQLNLDRA---------------E   66 (290)
T ss_dssp             CSTTCCEEECTTS-CCSSCCSC----CCTTCCEEECTTSC-CSEEEGGGGTTCTTCCEEECTTS---------------C
T ss_pred             ccCCccEEECCCC-CCCcCCCC----CCCCCCEEEcCCCc-CCccCHHHhhcCCCCCEEECCCC---------------c
Confidence            4788999998774 46667654    24789999999975 5544 466788999999999976               1


Q ss_pred             hhhhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCccccc
Q 037794          114 IQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLE  193 (293)
Q Consensus       114 ~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~  193 (293)
                      +..+... ..+++|+.|+++++ .++.++.    .+..+++|++|+++++.. +.+ +...+.++++|++|++.++ .++
T Consensus        67 l~~~~~~-~~l~~L~~L~Ls~N-~l~~l~~----~~~~l~~L~~L~l~~N~l-~~l-~~~~~~~l~~L~~L~L~~N-~l~  137 (290)
T 1p9a_G           67 LTKLQVD-GTLPVLGTLDLSHN-QLQSLPL----LGQTLPALTVLDVSFNRL-TSL-PLGALRGLGELQELYLKGN-ELK  137 (290)
T ss_dssp             CCEEECC-SCCTTCCEEECCSS-CCSSCCC----CTTTCTTCCEEECCSSCC-CCC-CSSTTTTCTTCCEEECTTS-CCC
T ss_pred             cCcccCC-CCCCcCCEEECCCC-cCCcCch----hhccCCCCCEEECCCCcC-ccc-CHHHHcCCCCCCEEECCCC-CCC
Confidence            1122221 56899999999985 4555442    145789999999998864 443 5556888999999999994 566


Q ss_pred             ccccccccccccccCCCCCCcccEEecCCCCCCceeccCCCccccCCCcceEeeecCCCccccccccchhh
Q 037794          194 EVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVLHV  264 (293)
Q Consensus       194 ~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~p~~l~~l  264 (293)
                      .++. ..+.        .+++|+.|++.+. .++.++.  ..+..+++|++|+++++ +++.+ |.++...
T Consensus       138 ~~~~-~~~~--------~l~~L~~L~L~~N-~l~~l~~--~~~~~l~~L~~L~L~~N-~l~~i-p~~~~~~  194 (290)
T 1p9a_G          138 TLPP-GLLT--------PTPKLEKLSLANN-NLTELPA--GLLNGLENLDTLLLQEN-SLYTI-PKGFFGS  194 (290)
T ss_dssp             CCCT-TTTT--------TCTTCCEEECTTS-CCSCCCT--TTTTTCTTCCEEECCSS-CCCCC-CTTTTTT
T ss_pred             ccCh-hhcc--------cccCCCEEECCCC-cCCccCH--HHhcCcCCCCEEECCCC-cCCcc-Chhhccc
Confidence            6542 1111        2389999999985 6777764  45678999999999997 78888 7665543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.35  E-value=3.2e-12  Score=110.98  Aligned_cols=187  Identities=17%  Similarity=0.101  Sum_probs=91.3

Q ss_pred             ccccceeecccccccccccccccc-ccCCCcceEeEcCCCCccccc----cCccCCCCeeEEEeccccccccccccCccc
Q 037794           36 FNELKFLELDDLPRLTSFCLENYT-LEFPSLERVFVTRCPNMKTFS----QGIVSTPKLHEVQVSKKEEDELHHWEGNKL  110 (293)
Q Consensus        36 ~~~L~~L~l~~~~~l~~~~~~~~~-~~~~~L~~L~i~~c~~l~~lp----~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~  110 (293)
                      +++|++|+++++..-...+.. .. ..+++|+.|+++++.--...+    .....+++|+.|.++++             
T Consensus        90 ~~~L~~L~l~~n~l~~~~~~~-~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n-------------  155 (310)
T 4glp_A           90 YSRLKELTLEDLKITGTMPPL-PLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQA-------------  155 (310)
T ss_dssp             HSCCCEEEEESCCCBSCCCCC-SSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECC-------------
T ss_pred             cCceeEEEeeCCEeccchhhh-hhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCC-------------
Confidence            455777777666433223222 11 456677777777654222211    12234667777777655             


Q ss_pred             hhhhhhhhhhhccCCCccEEEecCCCCceE--eccCCCCCcccCCCccEEEeccCCCCCccCCh---hHHhccCCCCeEE
Q 037794          111 NSTIQKRYEEMIGFRDIERLQLSHFPRLKE--IWHGQALPVSFFNNLFKLVVDDCANMSSAIPA---NLLRCLSNLRWLE  185 (293)
Q Consensus       111 ~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~--~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~---~~~~~l~~L~~L~  185 (293)
                       ......+..+..+++|++|+++++.-...  ++..  .....+++|++|++++|.. +.+ +.   ..+..+++|++|+
T Consensus       156 -~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~~~~~l~~L~~L~Ls~N~l-~~l-~~~~~~l~~~l~~L~~L~  230 (310)
T 4glp_A          156 -HSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAA--LCPHKFPAIQNLALRNTGM-ETP-TGVCAALAAAGVQPHSLD  230 (310)
T ss_dssp             -SSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTT--SCTTSSCCCCSCBCCSSCC-CCH-HHHHHHHHHHTCCCSSEE
T ss_pred             -CcchhhHHHhccCCCCCEEECCCCCCccchhhhHH--HhhhcCCCCCEEECCCCCC-Cch-HHHHHHHHhcCCCCCEEE
Confidence             11011112234566777777776542221  1100  1123556777777776643 221 21   1245567777777


Q ss_pred             ecCccccccc-ccccccccccccCCCCCCcccEEecCCCCCCceeccCCCccccCCCcceEeeecCCCcccc
Q 037794          186 VRNCDSLEEV-LHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETF  256 (293)
Q Consensus       186 i~~c~~l~~i-~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l  256 (293)
                      ++++ .++.+ +.  ....     ...+++|++|+++++ .++.++   ..+  .++|++|+++++ +++.+
T Consensus       231 Ls~N-~l~~~~p~--~~~~-----~~~~~~L~~L~Ls~N-~l~~lp---~~~--~~~L~~L~Ls~N-~l~~~  287 (310)
T 4glp_A          231 LSHN-SLRATVNP--SAPR-----CMWSSALNSLNLSFA-GLEQVP---KGL--PAKLRVLDLSSN-RLNRA  287 (310)
T ss_dssp             CTTS-CCCCCCCS--CCSS-----CCCCTTCCCEECCSS-CCCSCC---SCC--CSCCSCEECCSC-CCCSC
T ss_pred             CCCC-CCCccchh--hHHh-----ccCcCcCCEEECCCC-CCCchh---hhh--cCCCCEEECCCC-cCCCC
Confidence            7763 33333 21  1111     001257777777664 455543   222  267777777766 56655

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.34  E-value=3.6e-11  Score=118.17  Aligned_cols=135  Identities=14%  Similarity=0.125  Sum_probs=79.7

Q ss_pred             CCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccCc
Q 037794            4 PNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGI   83 (293)
Q Consensus         4 l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~   83 (293)
                      +++|++|+++++ .++.+....       ...+++|++|+++++.....+... ...++++|+.|+++++.--...|..+
T Consensus        23 p~~l~~LdLs~N-~i~~i~~~~-------~~~l~~L~~LdLs~n~~~~~i~~~-~f~~L~~L~~L~Ls~N~l~~~~p~~~   93 (844)
T 3j0a_A           23 LNTTERLLLSFN-YIRTVTASS-------FPFLEQLQLLELGSQYTPLTIDKE-AFRNLPNLRILDLGSSKIYFLHPDAF   93 (844)
T ss_dssp             CTTCCEEEEESC-CCCEECSSS-------CSSCCSCSEEEECTTCCCCEECTT-TTSSCTTCCEEECTTCCCCEECTTSS
T ss_pred             CCCcCEEECCCC-cCCccChhH-------CcccccCeEEeCCCCCCccccCHH-HhcCCCCCCEEECCCCcCcccCHhHc
Confidence            467888888876 455554322       223788888888887555444322 24577888888888764333446677


Q ss_pred             cCCCCeeEEEeccccccccccccCccchhhhhhhhhh--hccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEec
Q 037794           84 VSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEE--MIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVD  161 (293)
Q Consensus        84 ~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~  161 (293)
                      ..+++|+.|++++|. ..             ...+..  +..+++|+.|+++++. +..+....  .+..+++|++|+++
T Consensus        94 ~~l~~L~~L~Ls~n~-l~-------------~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~--~~~~L~~L~~L~Ls  156 (844)
T 3j0a_A           94 QGLFHLFELRLYFCG-LS-------------DAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHP--SFGKLNSLKSIDFS  156 (844)
T ss_dssp             CSCSSCCCEECTTCC-CS-------------SCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCG--GGGTCSSCCEEEEE
T ss_pred             cCCcccCEeeCcCCC-CC-------------cccccCccccccCCCCEEECCCCc-ccccccch--hHhhCCCCCEEECC
Confidence            788888888887761 11             111111  3556677777777643 33222110  13456677777776


Q ss_pred             cCC
Q 037794          162 DCA  164 (293)
Q Consensus       162 ~c~  164 (293)
                      ++.
T Consensus       157 ~N~  159 (844)
T 3j0a_A          157 SNQ  159 (844)
T ss_dssp             SSC
T ss_pred             CCc
Confidence            654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.32  E-value=2.5e-11  Score=112.08  Aligned_cols=197  Identities=14%  Similarity=0.096  Sum_probs=134.8

Q ss_pred             CCCCCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccc
Q 037794            1 VGIPNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFS   80 (293)
Q Consensus         1 ~g~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp   80 (293)
                      ++.+++|++|++++|. +..++. ..        .+++|++|+++++. +..++      ..++|+.|++++| .+..++
T Consensus        54 ~~~l~~L~~L~Ls~N~-l~~~~~-l~--------~l~~L~~L~Ls~N~-l~~l~------~~~~L~~L~L~~N-~l~~~~  115 (487)
T 3oja_A           54 LAPFTKLELLNLSSNV-LYETLD-LE--------SLSTLRTLDLNNNY-VQELL------VGPSIETLHAANN-NISRVS  115 (487)
T ss_dssp             GTTCTTCCEEECTTSC-CEEEEE-CT--------TCTTCCEEECCSSE-EEEEE------ECTTCCEEECCSS-CCCCEE
T ss_pred             HhCCCCCCEEEeeCCC-CCCCcc-cc--------cCCCCCEEEecCCc-CCCCC------CCCCcCEEECcCC-cCCCCC
Confidence            3578999999999984 554443 22        38999999999873 44444      3489999999987 455554


Q ss_pred             cCccCCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEe
Q 037794           81 QGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVV  160 (293)
Q Consensus        81 ~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i  160 (293)
                      .  ..+++|+.|+++++              ......+..+..+++|+.|+++++. +..+.... + ...+++|++|++
T Consensus       116 ~--~~l~~L~~L~L~~N--------------~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~-l-~~~l~~L~~L~L  176 (487)
T 3oja_A          116 C--SRGQGKKNIYLANN--------------KITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAE-L-AASSDTLEHLNL  176 (487)
T ss_dssp             E--CCCSSCEEEECCSS--------------CCCSGGGBCGGGGSSEEEEECTTSC-CCEEEGGG-G-GGGTTTCCEEEC
T ss_pred             c--cccCCCCEEECCCC--------------CCCCCCchhhcCCCCCCEEECCCCC-CCCcChHH-H-hhhCCcccEEec
Confidence            3  34688999999876              1111122234668899999998864 55443222 1 125789999999


Q ss_pred             ccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceeccCCCccccCC
Q 037794          161 DDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMP  240 (293)
Q Consensus       161 ~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~  240 (293)
                      ++|... .+ +.  ...+++|+.|++++ +.++.++.  .+..       . ++|+.|+++++ .++.++   ..+..++
T Consensus       177 s~N~l~-~~-~~--~~~l~~L~~L~Ls~-N~l~~~~~--~~~~-------l-~~L~~L~Ls~N-~l~~lp---~~l~~l~  237 (487)
T 3oja_A          177 QYNFIY-DV-KG--QVVFAKLKTLDLSS-NKLAFMGP--EFQS-------A-AGVTWISLRNN-KLVLIE---KALRFSQ  237 (487)
T ss_dssp             TTSCCC-EE-EC--CCCCTTCCEEECCS-SCCCEECG--GGGG-------G-TTCSEEECTTS-CCCEEC---TTCCCCT
T ss_pred             CCCccc-cc-cc--cccCCCCCEEECCC-CCCCCCCH--hHcC-------C-CCccEEEecCC-cCcccc---hhhccCC
Confidence            988743 32 32  33588999999998 45666542  1222       3 88999999984 677765   4567889


Q ss_pred             CcceEeeecCCCcc
Q 037794          241 MLWSLTIENCPDME  254 (293)
Q Consensus       241 ~L~~L~i~~C~~L~  254 (293)
                      +|+.|++++++ +.
T Consensus       238 ~L~~L~l~~N~-l~  250 (487)
T 3oja_A          238 NLEHFDLRGNG-FH  250 (487)
T ss_dssp             TCCEEECTTCC-BC
T ss_pred             CCCEEEcCCCC-Cc
Confidence            99999999885 44

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.32  E-value=6.4e-12  Score=101.87  Aligned_cols=150  Identities=16%  Similarity=0.249  Sum_probs=107.3

Q ss_pred             cCCCcceEeEcCCCCccccccCccCCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCCCCceE
Q 037794           61 EFPSLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRLKE  140 (293)
Q Consensus        61 ~~~~L~~L~i~~c~~l~~lp~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~  140 (293)
                      .+++|+.|+++++ .++.+| ++..+++|+.|++++| ..              .. ...+..+++|++|+++++. ++.
T Consensus        42 ~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~l~~n-~~--------------~~-~~~l~~l~~L~~L~l~~n~-l~~  102 (197)
T 4ezg_A           42 QMNSLTYITLANI-NVTDLT-GIEYAHNIKDLTINNI-HA--------------TN-YNPISGLSNLERLRIMGKD-VTS  102 (197)
T ss_dssp             HHHTCCEEEEESS-CCSCCT-TGGGCTTCSEEEEESC-CC--------------SC-CGGGTTCTTCCEEEEECTT-CBG
T ss_pred             hcCCccEEeccCC-CccChH-HHhcCCCCCEEEccCC-CC--------------Cc-chhhhcCCCCCEEEeECCc-cCc
Confidence            6788888888885 466666 6778888999988876 11              01 1234668889999998854 443


Q ss_pred             eccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEec
Q 037794          141 IWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRL  220 (293)
Q Consensus       141 ~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l  220 (293)
                      .....   +..+++|++|++++|...... + ..+..+++|++|++.+|..++.++.   +.        .+++|++|++
T Consensus       103 ~~~~~---l~~l~~L~~L~Ls~n~i~~~~-~-~~l~~l~~L~~L~L~~n~~i~~~~~---l~--------~l~~L~~L~l  166 (197)
T 4ezg_A          103 DKIPN---LSGLTSLTLLDISHSAHDDSI-L-TKINTLPKVNSIDLSYNGAITDIMP---LK--------TLPELKSLNI  166 (197)
T ss_dssp             GGSCC---CTTCTTCCEEECCSSBCBGGG-H-HHHTTCSSCCEEECCSCTBCCCCGG---GG--------GCSSCCEEEC
T ss_pred             ccChh---hcCCCCCCEEEecCCccCcHh-H-HHHhhCCCCCEEEccCCCCccccHh---hc--------CCCCCCEEEC
Confidence            22222   567899999999988654432 3 4578899999999999876766642   11        2489999999


Q ss_pred             CCCCCCceeccCCCccccCCCcceEeeecC
Q 037794          221 IDLPKLKRFCNFTGNIIEMPMLWSLTIENC  250 (293)
Q Consensus       221 ~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C  250 (293)
                      .++ .++++    ..+..+++|++|++++.
T Consensus       167 ~~n-~i~~~----~~l~~l~~L~~L~l~~N  191 (197)
T 4ezg_A          167 QFD-GVHDY----RGIEDFPKLNQLYAFSQ  191 (197)
T ss_dssp             TTB-CCCCC----TTGGGCSSCCEEEECBC
T ss_pred             CCC-CCcCh----HHhccCCCCCEEEeeCc
Confidence            986 46665    36778899999999886

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.31  E-value=3.7e-11  Score=102.16  Aligned_cols=179  Identities=18%  Similarity=0.264  Sum_probs=127.0

Q ss_pred             CCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCcccccc-C
Q 037794            4 PNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQ-G   82 (293)
Q Consensus         4 l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~-~   82 (293)
                      .++|++|+++++ .+..++...       ...+++|++|+++++. +..++.. ....+++|++|+++++ .++.+|. .
T Consensus        36 ~~~l~~L~l~~n-~l~~~~~~~-------~~~l~~L~~L~l~~n~-l~~i~~~-~~~~l~~L~~L~l~~n-~l~~~~~~~  104 (270)
T 2o6q_A           36 PADTKKLDLQSN-KLSSLPSKA-------FHRLTKLRLLYLNDNK-LQTLPAG-IFKELKNLETLWVTDN-KLQALPIGV  104 (270)
T ss_dssp             CTTCSEEECCSS-CCSCCCTTS-------SSSCTTCCEEECCSSC-CSCCCTT-TTSSCTTCCEEECCSS-CCCCCCTTT
T ss_pred             CCCCCEEECcCC-CCCeeCHHH-------hcCCCCCCEEECCCCc-cCeeChh-hhcCCCCCCEEECCCC-cCCcCCHhH
Confidence            457999999987 566666432       2238999999998864 4555543 2347899999999986 4666654 4


Q ss_pred             ccCCCCeeEEEeccccccccccccCccchhhhhhhh-hhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEec
Q 037794           83 IVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRY-EEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVD  161 (293)
Q Consensus        83 ~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~  161 (293)
                      +..+++|+.|.++++               .+..+. ..+..+++|+.|+++++ .++.++.+.   +..+++|++|+++
T Consensus       105 ~~~l~~L~~L~l~~n---------------~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~---~~~l~~L~~L~L~  165 (270)
T 2o6q_A          105 FDQLVNLAELRLDRN---------------QLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGV---FDKLTSLKELRLY  165 (270)
T ss_dssp             TTTCSSCCEEECCSS---------------CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTT---TTTCTTCCEEECC
T ss_pred             cccccCCCEEECCCC---------------ccCeeCHHHhCcCcCCCEEECCCC-cCCccCHhH---ccCCcccceeEec
Confidence            578999999999876               111111 22467899999999986 466655443   5578999999999


Q ss_pred             cCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCC
Q 037794          162 DCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLP  224 (293)
Q Consensus       162 ~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~  224 (293)
                      ++. +..+ +...+.++++|++|++.++ .++.++. ..+.        .+++|+.|++.+.+
T Consensus       166 ~n~-l~~~-~~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~--------~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          166 NNQ-LKRV-PEGAFDKLTELKTLKLDNN-QLKRVPE-GAFD--------SLEKLKMLQLQENP  216 (270)
T ss_dssp             SSC-CSCC-CTTTTTTCTTCCEEECCSS-CCSCCCT-TTTT--------TCTTCCEEECCSSC
T ss_pred             CCc-CcEe-ChhHhccCCCcCEEECCCC-cCCcCCH-HHhc--------cccCCCEEEecCCC
Confidence            885 4443 5556888999999999995 5666542 1111        23899999998754

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.30  E-value=4.5e-11  Score=100.56  Aligned_cols=174  Identities=16%  Similarity=0.162  Sum_probs=109.1

Q ss_pred             ccceeeccccccccccccccccccCCCcceEeEcCCCCcccc-ccCccCCCCeeEEEeccccccccccccCccchhhhhh
Q 037794           38 ELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTF-SQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQK  116 (293)
Q Consensus        38 ~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l-p~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~  116 (293)
                      ..+.+++.+. .+..++..    -.++++.|+++++. +..+ +..+..+++|+.|+++++               .+..
T Consensus        15 ~~~~l~~~~~-~l~~~p~~----~~~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n---------------~l~~   73 (251)
T 3m19_A           15 GKKEVDCQGK-SLDSVPSG----IPADTEKLDLQSTG-LATLSDATFRGLTKLTWLNLDYN---------------QLQT   73 (251)
T ss_dssp             GGTEEECTTC-CCSSCCSC----CCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTS---------------CCCC
T ss_pred             CCeEEecCCC-CccccCCC----CCCCCCEEEccCCC-cCccCHhHhcCcccCCEEECCCC---------------cCCc
Confidence            4556666553 34555543    23577788887754 4433 334567788888887765               1111


Q ss_pred             h-hhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCccccccc
Q 037794          117 R-YEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEV  195 (293)
Q Consensus       117 l-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i  195 (293)
                      + ...+..+++|+.|+++++. ++.++...   +..+++|++|+++++. +..+ +...+.++++|++|++.++ .++.+
T Consensus        74 ~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~---~~~l~~L~~L~L~~N~-l~~~-~~~~~~~l~~L~~L~Ls~N-~l~~~  146 (251)
T 3m19_A           74 LSAGVFDDLTELGTLGLANNQ-LASLPLGV---FDHLTQLDKLYLGGNQ-LKSL-PSGVFDRLTKLKELRLNTN-QLQSI  146 (251)
T ss_dssp             CCTTTTTTCTTCCEEECTTSC-CCCCCTTT---TTTCTTCCEEECCSSC-CCCC-CTTTTTTCTTCCEEECCSS-CCCCC
T ss_pred             cCHhHhccCCcCCEEECCCCc-ccccChhH---hcccCCCCEEEcCCCc-CCCc-ChhHhccCCcccEEECcCC-cCCcc
Confidence            1 1223567788888887743 55544333   4567888888888874 4443 5555777888888888884 56555


Q ss_pred             ccccccccccccCCCCCCcccEEecCCCCCCceeccCCCccccCCCcceEeeecCC
Q 037794          196 LHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCP  251 (293)
Q Consensus       196 ~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~  251 (293)
                      +. ..+.        .+++|++|++.+. .++.++.  ..+..+++|++|++++++
T Consensus       147 ~~-~~~~--------~l~~L~~L~L~~N-~l~~~~~--~~~~~l~~L~~L~l~~N~  190 (251)
T 3m19_A          147 PA-GAFD--------KLTNLQTLSLSTN-QLQSVPH--GAFDRLGKLQTITLFGNQ  190 (251)
T ss_dssp             CT-TTTT--------TCTTCCEEECCSS-CCSCCCT--TTTTTCTTCCEEECCSCC
T ss_pred             CH-HHcC--------cCcCCCEEECCCC-cCCccCH--HHHhCCCCCCEEEeeCCc
Confidence            42 1111        2388888888885 5666543  456778889999888763

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.29  E-value=2.3e-11  Score=98.53  Aligned_cols=150  Identities=13%  Similarity=0.240  Sum_probs=95.4

Q ss_pred             cccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccCccCCCCeeEEEeccccccccccccCccchhhh
Q 037794           35 AFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTI  114 (293)
Q Consensus        35 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~  114 (293)
                      .+++|+.|+++++. +..++ .  ...+++|++|++++| .++.++ .+..+++|++|+++++              ...
T Consensus        42 ~l~~L~~L~l~~n~-i~~l~-~--l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n--------------~l~  101 (197)
T 4ezg_A           42 QMNSLTYITLANIN-VTDLT-G--IEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGK--------------DVT  101 (197)
T ss_dssp             HHHTCCEEEEESSC-CSCCT-T--GGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECT--------------TCB
T ss_pred             hcCCccEEeccCCC-ccChH-H--HhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECC--------------ccC
Confidence            37778888887753 34444 1  457788888888887 555443 5567788888888765              111


Q ss_pred             hhhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccc
Q 037794          115 QKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEE  194 (293)
Q Consensus       115 ~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~  194 (293)
                      ...+..+..+++|+.|+++++. ++......   +..+++|++|++++|..+.++ +  .+..+++|++|++.+| .++.
T Consensus       102 ~~~~~~l~~l~~L~~L~Ls~n~-i~~~~~~~---l~~l~~L~~L~L~~n~~i~~~-~--~l~~l~~L~~L~l~~n-~i~~  173 (197)
T 4ezg_A          102 SDKIPNLSGLTSLTLLDISHSA-HDDSILTK---INTLPKVNSIDLSYNGAITDI-M--PLKTLPELKSLNIQFD-GVHD  173 (197)
T ss_dssp             GGGSCCCTTCTTCCEEECCSSB-CBGGGHHH---HTTCSSCCEEECCSCTBCCCC-G--GGGGCSSCCEEECTTB-CCCC
T ss_pred             cccChhhcCCCCCCEEEecCCc-cCcHhHHH---HhhCCCCCEEEccCCCCcccc-H--hhcCCCCCCEEECCCC-CCcC
Confidence            1223344667888888888754 33211111   456788888888888756653 4  3677888888888885 3444


Q ss_pred             cccccccccccccCCCCCCcccEEecCCC
Q 037794          195 VLHLEELNADKEHIGPLFPRLFILRLIDL  223 (293)
Q Consensus       195 i~~~~~~~~~~~~~~~~f~~L~~L~l~~~  223 (293)
                      ++   .+.        .+++|++|++.+.
T Consensus       174 ~~---~l~--------~l~~L~~L~l~~N  191 (197)
T 4ezg_A          174 YR---GIE--------DFPKLNQLYAFSQ  191 (197)
T ss_dssp             CT---TGG--------GCSSCCEEEECBC
T ss_pred             hH---Hhc--------cCCCCCEEEeeCc
Confidence            43   111        2388888888763

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.29  E-value=3.9e-11  Score=102.27  Aligned_cols=185  Identities=18%  Similarity=0.250  Sum_probs=127.5

Q ss_pred             ccccceeeccccccccccccccccccCCCcceEeEcCCCCcccccc-CccCCCCeeEEEeccccccccccccCccchhhh
Q 037794           36 FNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQ-GIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTI  114 (293)
Q Consensus        36 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~-~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~  114 (293)
                      .++|++|+++++. +..++.. ....+++|++|+++++ .++.++. .+..+++|+.|+++++               .+
T Consensus        27 ~~~l~~L~ls~n~-l~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n---------------~l   88 (276)
T 2z62_A           27 PFSTKNLDLSFNP-LRHLGSY-SFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGN---------------PI   88 (276)
T ss_dssp             CTTCCEEECTTCC-CCEECTT-TTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTC---------------CC
T ss_pred             CCCccEEECCCCc-ccccCHh-HhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCC---------------cc
Confidence            3569999998874 4555442 2457899999999997 5665554 5678999999999976               11


Q ss_pred             hhh-hhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCccccc
Q 037794          115 QKR-YEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLE  193 (293)
Q Consensus       115 ~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~  193 (293)
                      ..+ +..+..+++|+.|+++++. +..+...   ++..+++|++|+++++.....-+|. .+.++++|++|++.++ .++
T Consensus        89 ~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~l~~-~~~~l~~L~~L~Ls~N-~l~  162 (276)
T 2z62_A           89 QSLALGAFSGLSSLQKLVAVETN-LASLENF---PIGHLKTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLSSN-KIQ  162 (276)
T ss_dssp             CEECTTTTTTCTTCCEEECTTSC-CCCSTTC---CCTTCTTCCEEECCSSCCCCCCCCG-GGGGCTTCCEEECCSS-CCC
T ss_pred             CccChhhhcCCccccEEECCCCC-ccccCch---hcccCCCCCEEECcCCccceecCch-hhccCCCCCEEECCCC-CCC
Confidence            111 1334678999999999864 4444332   3667899999999988754321244 4788999999999995 455


Q ss_pred             ccccccccccccccCCCCCCccc----EEecCCCCCCceeccCCCccccCCCcceEeeecCCCccccccc
Q 037794          194 EVLHLEELNADKEHIGPLFPRLF----ILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISN  259 (293)
Q Consensus       194 ~i~~~~~~~~~~~~~~~~f~~L~----~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~p~  259 (293)
                      .++. ..+..       . ++|+    +|++++. .++.++.   ......+|++|+++++ +++.+ |.
T Consensus       163 ~~~~-~~~~~-------l-~~L~~l~l~L~ls~n-~l~~~~~---~~~~~~~L~~L~L~~n-~l~~~-~~  217 (276)
T 2z62_A          163 SIYC-TDLRV-------L-HQMPLLNLSLDLSLN-PMNFIQP---GAFKEIRLKELALDTN-QLKSV-PD  217 (276)
T ss_dssp             EECG-GGGHH-------H-HTCTTCCEEEECCSS-CCCEECT---TSSCSCCEEEEECCSS-CCSCC-CT
T ss_pred             cCCH-HHhhh-------h-hhccccceeeecCCC-cccccCc---cccCCCcccEEECCCC-ceeec-CH
Confidence            5532 11111       1 3444    7888874 5777653   3344558999999998 58888 54

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.28  E-value=6.2e-11  Score=102.87  Aligned_cols=172  Identities=17%  Similarity=0.277  Sum_probs=129.8

Q ss_pred             cccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccCccCCCCeeEEEeccccccccccccCccchhhh
Q 037794           35 AFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTI  114 (293)
Q Consensus        35 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~  114 (293)
                      .+++|++|++.++ .+..++.   ...+++|+.|++++| .++.++. +..+++|+.|+++++.               +
T Consensus        39 ~l~~L~~L~l~~~-~i~~l~~---~~~l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n~---------------l   97 (308)
T 1h6u_A           39 DLDGITTLSAFGT-GVTTIEG---VQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGNP---------------L   97 (308)
T ss_dssp             HHHTCCEEECTTS-CCCCCTT---GGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSCC---------------C
T ss_pred             HcCCcCEEEeeCC-CccCchh---hhccCCCCEEEccCC-cCCCChh-HccCCCCCEEEccCCc---------------C
Confidence            4889999999987 3455542   557999999999997 5666665 7889999999999871               1


Q ss_pred             hhhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccc
Q 037794          115 QKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEE  194 (293)
Q Consensus       115 ~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~  194 (293)
                      ..+ ..+..+++|+.|+++++. ++.++     ++..+++|++|++++|.. ..+ +.  +..+++|+.|++.+| .++.
T Consensus        98 ~~~-~~~~~l~~L~~L~l~~n~-l~~~~-----~l~~l~~L~~L~l~~n~l-~~~-~~--l~~l~~L~~L~l~~n-~l~~  165 (308)
T 1h6u_A           98 KNV-SAIAGLQSIKTLDLTSTQ-ITDVT-----PLAGLSNLQVLYLDLNQI-TNI-SP--LAGLTNLQYLSIGNA-QVSD  165 (308)
T ss_dssp             SCC-GGGTTCTTCCEEECTTSC-CCCCG-----GGTTCTTCCEEECCSSCC-CCC-GG--GGGCTTCCEEECCSS-CCCC
T ss_pred             CCc-hhhcCCCCCCEEECCCCC-CCCch-----hhcCCCCCCEEECCCCcc-CcC-cc--ccCCCCccEEEccCC-cCCC
Confidence            112 235778999999999965 55443     156789999999999864 433 33  778999999999995 5555


Q ss_pred             cccccccccccccCCCCCCcccEEecCCCCCCceeccCCCccccCCCcceEeeecCCCcccc
Q 037794          195 VLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETF  256 (293)
Q Consensus       195 i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l  256 (293)
                      ++.   +.        .+++|++|++.++ .++++    ..+..+++|++|++++| +++.+
T Consensus       166 ~~~---l~--------~l~~L~~L~l~~n-~l~~~----~~l~~l~~L~~L~L~~N-~l~~~  210 (308)
T 1h6u_A          166 LTP---LA--------NLSKLTTLKADDN-KISDI----SPLASLPNLIEVHLKNN-QISDV  210 (308)
T ss_dssp             CGG---GT--------TCTTCCEEECCSS-CCCCC----GGGGGCTTCCEEECTTS-CCCBC
T ss_pred             Chh---hc--------CCCCCCEEECCCC-ccCcC----hhhcCCCCCCEEEccCC-ccCcc
Confidence            542   21        2499999999986 57666    34778999999999998 68777

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.28  E-value=7.2e-11  Score=110.76  Aligned_cols=157  Identities=16%  Similarity=0.195  Sum_probs=112.2

Q ss_pred             ccCCCcceEeEcCCCCccccccCccCCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCCCCce
Q 037794           60 LEFPSLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRLK  139 (293)
Q Consensus        60 ~~~~~L~~L~i~~c~~l~~lp~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~  139 (293)
                      ..+++|++|+++++.--..+|..+..+++|+.|+++++            .-..+..++..+..+++|+.|+++++. ++
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N------------~l~~~~~~~~~~~~l~~L~~L~l~~N~-l~  416 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN------------GLKNFFKVALMTKNMSSLETLDVSLNS-LN  416 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSS------------CCCBTTHHHHTTTTCTTCCEEECTTSC-CB
T ss_pred             cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCC------------CcCCcccchhhhcCCCCCCEEECCCCc-CC
Confidence            36788999999887544456777788899999998875            101112334456788999999999865 44


Q ss_pred             E-eccCCCCCcccCCCccEEEeccCCCCCccCChhHHhcc-CCCCeEEecCcccccccccccccccccccCCCCCCcccE
Q 037794          140 E-IWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCL-SNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFI  217 (293)
Q Consensus       140 ~-~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l-~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~  217 (293)
                      . ++.+.   ...+++|++|++++|......     ...+ ++|+.|++.++ .++.++.  +...       . ++|++
T Consensus       417 ~~~~~~~---~~~l~~L~~L~l~~n~l~~~~-----~~~l~~~L~~L~L~~N-~l~~ip~--~~~~-------l-~~L~~  477 (562)
T 3a79_B          417 SHAYDRT---CAWAESILVLNLSSNMLTGSV-----FRCLPPKVKVLDLHNN-RIMSIPK--DVTH-------L-QALQE  477 (562)
T ss_dssp             SCCSSCC---CCCCTTCCEEECCSSCCCGGG-----GSSCCTTCSEEECCSS-CCCCCCT--TTTS-------S-CCCSE
T ss_pred             CccChhh---hcCcccCCEEECCCCCCCcch-----hhhhcCcCCEEECCCC-cCcccCh--hhcC-------C-CCCCE
Confidence            3 55433   456789999999998754432     2334 69999999995 6776653  2112       3 89999


Q ss_pred             EecCCCCCCceeccCCCccccCCCcceEeeecCC
Q 037794          218 LRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCP  251 (293)
Q Consensus       218 L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~  251 (293)
                      |++.++ .++.++.  ..+..+++|+.|+++++|
T Consensus       478 L~L~~N-~l~~l~~--~~~~~l~~L~~L~l~~N~  508 (562)
T 3a79_B          478 LNVASN-QLKSVPD--GVFDRLTSLQYIWLHDNP  508 (562)
T ss_dssp             EECCSS-CCCCCCT--TSTTTCTTCCCEECCSCC
T ss_pred             EECCCC-CCCCCCH--HHHhcCCCCCEEEecCCC
Confidence            999995 6777764  347889999999999975

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.28  E-value=1.9e-11  Score=114.12  Aligned_cols=156  Identities=13%  Similarity=0.130  Sum_probs=85.2

Q ss_pred             CCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccc-cC
Q 037794            4 PNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFS-QG   82 (293)
Q Consensus         4 l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp-~~   82 (293)
                      .++|++|+++++ .++.++...       ...+++|++|+++++. +..++.. ....+++|++|+++++. +..++ ..
T Consensus        25 ~~~L~~L~Ls~n-~l~~~~~~~-------~~~l~~L~~L~Ls~n~-i~~~~~~-~~~~l~~L~~L~Ls~n~-l~~~~~~~   93 (549)
T 2z81_A           25 TAAMKSLDLSFN-KITYIGHGD-------LRACANLQVLILKSSR-INTIEGD-AFYSLGSLEHLDLSDNH-LSSLSSSW   93 (549)
T ss_dssp             CTTCCEEECCSS-CCCEECSST-------TSSCTTCCEEECTTSC-CCEECTT-TTTTCTTCCEEECTTSC-CCSCCHHH
T ss_pred             CCCccEEECcCC-ccCccChhh-------hhcCCcccEEECCCCC-cCccChh-hccccccCCEEECCCCc-cCccCHHH
Confidence            357888888887 456554322       1237788888887763 3444322 14467788888887763 44443 33


Q ss_pred             ccCCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEecc
Q 037794           83 IVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDD  162 (293)
Q Consensus        83 ~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~  162 (293)
                      +..+++|+.|+++++. ....            ..+..+..+++|+.|+++++..++.++...   +..+++|++|++++
T Consensus        94 ~~~l~~L~~L~Ls~n~-l~~~------------~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~---~~~l~~L~~L~L~~  157 (549)
T 2z81_A           94 FGPLSSLKYLNLMGNP-YQTL------------GVTSLFPNLTNLQTLRIGNVETFSEIRRID---FAGLTSLNELEIKA  157 (549)
T ss_dssp             HTTCTTCCEEECTTCC-CSSS------------CSSCSCTTCTTCCEEEEEESSSCCEECTTT---TTTCCEEEEEEEEE
T ss_pred             hccCCCCcEEECCCCc-cccc------------chhhhhhccCCccEEECCCCccccccCHhh---hhcccccCeeeccC
Confidence            6677888888877651 0000            111223455666666666655445444333   34556666666665


Q ss_pred             CCCCCccCChhHHhccCCCCeEEecC
Q 037794          163 CANMSSAIPANLLRCLSNLRWLEVRN  188 (293)
Q Consensus       163 c~~l~~~~p~~~~~~l~~L~~L~i~~  188 (293)
                      +..... .|.. +..+++|++|++.+
T Consensus       158 n~l~~~-~~~~-l~~l~~L~~L~l~~  181 (549)
T 2z81_A          158 LSLRNY-QSQS-LKSIRDIHHLTLHL  181 (549)
T ss_dssp             TTCCEE-CTTT-TTTCSEEEEEEEEC
T ss_pred             Cccccc-Chhh-hhccccCceEeccc
Confidence            543322 2322 44455555555544

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.28  E-value=5.6e-11  Score=112.64  Aligned_cols=51  Identities=20%  Similarity=0.175  Sum_probs=29.0

Q ss_pred             CCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCC
Q 037794            5 NSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRC   73 (293)
Q Consensus         5 ~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c   73 (293)
                      ++|++|++++| .++.++..           +++|++|+++++. ++.++.     .+++|+.|+++++
T Consensus        61 ~~L~~L~L~~N-~l~~lp~~-----------l~~L~~L~Ls~N~-l~~lp~-----~l~~L~~L~Ls~N  111 (622)
T 3g06_A           61 AHITTLVIPDN-NLTSLPAL-----------PPELRTLEVSGNQ-LTSLPV-----LPPGLLELSIFSN  111 (622)
T ss_dssp             TTCSEEEECSC-CCSCCCCC-----------CTTCCEEEECSCC-CSCCCC-----CCTTCCEEEECSC
T ss_pred             CCCcEEEecCC-CCCCCCCc-----------CCCCCEEEcCCCc-CCcCCC-----CCCCCCEEECcCC
Confidence            56777777776 45555541           5666666666653 333433     3455555555543

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.28  E-value=9.7e-12  Score=113.79  Aligned_cols=79  Identities=8%  Similarity=-0.101  Sum_probs=33.4

Q ss_pred             CCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCC-------------CcceEeE
Q 037794            4 PNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFP-------------SLERVFV   70 (293)
Q Consensus         4 l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~-------------~L~~L~i   70 (293)
                      .++|++|.++++ .+..+|...+.        +++|++|+++++.....++..  ...+.             ++++|++
T Consensus        10 ~~~L~~L~l~~n-~l~~iP~~i~~--------L~~L~~L~l~~n~~~~~~p~~--~~~l~~L~~l~l~~c~~~~l~~L~l   78 (454)
T 1jl5_A           10 NTFLQEPLRHSS-NLTEMPVEAEN--------VKSKTEYYNAWSEWERNAPPG--NGEQREMAVSRLRDCLDRQAHELEL   78 (454)
T ss_dssp             ---------------------------------CCHHHHHHHHHHHHHTSCTT--SCCCHHHHHHHHHHHHHHTCSEEEC
T ss_pred             cccchhhhcccC-chhhCChhHhc--------ccchhhhhccCCcccccCCcc--cccchhcchhhhhhhhccCCCEEEe
Confidence            467888888776 55788865544        788888888776544344443  22233             3477777


Q ss_pred             cCCCCccccccCccCCCCeeEEEeccc
Q 037794           71 TRCPNMKTFSQGIVSTPKLHEVQVSKK   97 (293)
Q Consensus        71 ~~c~~l~~lp~~~~~~~~L~~L~l~~c   97 (293)
                      ++|. ++.+|..   .++|+.|+++++
T Consensus        79 ~~~~-l~~lp~~---~~~L~~L~l~~n  101 (454)
T 1jl5_A           79 NNLG-LSSLPEL---PPHLESLVASCN  101 (454)
T ss_dssp             TTSC-CSCCCSC---CTTCSEEECCSS
T ss_pred             cCCc-cccCCCC---cCCCCEEEccCC
Confidence            7763 5656542   367777777754

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.27  E-value=1.1e-10  Score=110.51  Aligned_cols=205  Identities=18%  Similarity=0.109  Sum_probs=111.2

Q ss_pred             CcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccCccC
Q 037794            6 SLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGIVS   85 (293)
Q Consensus         6 ~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~   85 (293)
                      ++++|+++++ .++.+|...          .++|+.|+++++ .++.++.     .+++|+.|++++| +++.+|.   .
T Consensus        41 ~l~~L~ls~n-~L~~lp~~l----------~~~L~~L~L~~N-~l~~lp~-----~l~~L~~L~Ls~N-~l~~lp~---~   99 (622)
T 3g06_A           41 GNAVLNVGES-GLTTLPDCL----------PAHITTLVIPDN-NLTSLPA-----LPPELRTLEVSGN-QLTSLPV---L   99 (622)
T ss_dssp             CCCEEECCSS-CCSCCCSCC----------CTTCSEEEECSC-CCSCCCC-----CCTTCCEEEECSC-CCSCCCC---C
T ss_pred             CCcEEEecCC-CcCccChhh----------CCCCcEEEecCC-CCCCCCC-----cCCCCCEEEcCCC-cCCcCCC---C
Confidence            5788999876 677777643          478999999887 4566655     4789999999987 4777775   6


Q ss_pred             CCCeeEEEeccccccccccccCccc------hhhhhhhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEE
Q 037794           86 TPKLHEVQVSKKEEDELHHWEGNKL------NSTIQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLV  159 (293)
Q Consensus        86 ~~~L~~L~l~~c~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~  159 (293)
                      +++|+.|+++++. .......-..+      +..+..++   ..+++|+.|+++++. ++.++.       .+.+|+.|+
T Consensus       100 l~~L~~L~Ls~N~-l~~l~~~l~~L~~L~L~~N~l~~lp---~~l~~L~~L~Ls~N~-l~~l~~-------~~~~L~~L~  167 (622)
T 3g06_A          100 PPGLLELSIFSNP-LTHLPALPSGLCKLWIFGNQLTSLP---VLPPGLQELSVSDNQ-LASLPA-------LPSELCKLW  167 (622)
T ss_dssp             CTTCCEEEECSCC-CCCCCCCCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSC-CSCCCC-------CCTTCCEEE
T ss_pred             CCCCCEEECcCCc-CCCCCCCCCCcCEEECCCCCCCcCC---CCCCCCCEEECcCCc-CCCcCC-------ccCCCCEEE
Confidence            7889999998762 11100000000      00011111   123556666665542 332221       124445555


Q ss_pred             eccCCCCCccCChhHHhccCCCCeEEecCcccccccccc-ccccc-------ccccCCCCCCcccEEecCCCCCCceecc
Q 037794          160 VDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHL-EELNA-------DKEHIGPLFPRLFILRLIDLPKLKRFCN  231 (293)
Q Consensus       160 i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~-~~~~~-------~~~~~~~~f~~L~~L~l~~~~~l~~~~~  231 (293)
                      ++++.. +. +|    ..+++|+.|++.++ .++.++.. ..+..       ....+ ..+++|++|+++++ .++.++ 
T Consensus       168 L~~N~l-~~-l~----~~~~~L~~L~Ls~N-~l~~l~~~~~~L~~L~L~~N~l~~l~-~~~~~L~~L~Ls~N-~L~~lp-  237 (622)
T 3g06_A          168 AYNNQL-TS-LP----MLPSGLQELSVSDN-QLASLPTLPSELYKLWAYNNRLTSLP-ALPSGLKELIVSGN-RLTSLP-  237 (622)
T ss_dssp             CCSSCC-SC-CC----CCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCSSCC-CCCTTCCEEECCSS-CCSCCC-
T ss_pred             CCCCCC-CC-Cc----ccCCCCcEEECCCC-CCCCCCCccchhhEEECcCCcccccC-CCCCCCCEEEccCC-ccCcCC-
Confidence            544432 22 12    22356666666653 23333210 00000       00001 12367888888775 566553 


Q ss_pred             CCCccccCCCcceEeeecCCCcccccccc
Q 037794          232 FTGNIIEMPMLWSLTIENCPDMETFISNS  260 (293)
Q Consensus       232 ~~~~~~~l~~L~~L~i~~C~~L~~l~p~~  260 (293)
                           ..+++|++|++++| +++.+ |..
T Consensus       238 -----~~l~~L~~L~Ls~N-~L~~l-p~~  259 (622)
T 3g06_A          238 -----VLPSELKELMVSGN-RLTSL-PML  259 (622)
T ss_dssp             -----CCCTTCCEEECCSS-CCSCC-CCC
T ss_pred             -----CCCCcCcEEECCCC-CCCcC-Ccc
Confidence                 34478888888887 67777 543

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.26  E-value=1.3e-11  Score=113.00  Aligned_cols=57  Identities=14%  Similarity=0.123  Sum_probs=34.8

Q ss_pred             hccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCc
Q 037794          121 MIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNC  189 (293)
Q Consensus       121 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c  189 (293)
                      +..+++|++|+++++. ++.++.       .+.+|++|+++++.. .. +| . +.++++|++|++.++
T Consensus       149 ~~~l~~L~~L~l~~N~-l~~lp~-------~~~~L~~L~L~~n~l-~~-l~-~-~~~l~~L~~L~l~~N  205 (454)
T 1jl5_A          149 LQNSSFLKIIDVDNNS-LKKLPD-------LPPSLEFIAAGNNQL-EE-LP-E-LQNLPFLTAIYADNN  205 (454)
T ss_dssp             CTTCTTCCEEECCSSC-CSCCCC-------CCTTCCEEECCSSCC-SS-CC-C-CTTCTTCCEEECCSS
T ss_pred             cCCCCCCCEEECCCCc-CcccCC-------CcccccEEECcCCcC-Cc-Cc-c-ccCCCCCCEEECCCC
Confidence            5667778888887753 443331       125777777777643 33 24 2 566777777777764

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.24  E-value=9.4e-11  Score=98.56  Aligned_cols=174  Identities=15%  Similarity=0.181  Sum_probs=119.8

Q ss_pred             CcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccc-cCcc
Q 037794            6 SLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFS-QGIV   84 (293)
Q Consensus         6 ~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp-~~~~   84 (293)
                      +.+++++++. .++.+|...          .++++.|+++++. +..+... ....+++|++|+++++ .++.++ ..+.
T Consensus        15 ~~~~l~~~~~-~l~~~p~~~----------~~~l~~L~L~~n~-l~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~~~~   80 (251)
T 3m19_A           15 GKKEVDCQGK-SLDSVPSGI----------PADTEKLDLQSTG-LATLSDA-TFRGLTKLTWLNLDYN-QLQTLSAGVFD   80 (251)
T ss_dssp             GGTEEECTTC-CCSSCCSCC----------CTTCCEEECTTSC-CCCCCTT-TTTTCTTCCEEECTTS-CCCCCCTTTTT
T ss_pred             CCeEEecCCC-CccccCCCC----------CCCCCEEEccCCC-cCccCHh-HhcCcccCCEEECCCC-cCCccCHhHhc
Confidence            3566777664 666666543          4679999998875 3444432 2457899999999986 455444 4467


Q ss_pred             CCCCeeEEEeccccccccccccCccchhhhhhhh-hhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccC
Q 037794           85 STPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRY-EEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDC  163 (293)
Q Consensus        85 ~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c  163 (293)
                      .+++|+.|+++++               .+..++ ..+..+++|+.|+++++ .++.++.+.   +..+++|++|+++++
T Consensus        81 ~l~~L~~L~L~~n---------------~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~---~~~l~~L~~L~Ls~N  141 (251)
T 3m19_A           81 DLTELGTLGLANN---------------QLASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGV---FDRLTKLKELRLNTN  141 (251)
T ss_dssp             TCTTCCEEECTTS---------------CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTT---TTTCTTCCEEECCSS
T ss_pred             cCCcCCEEECCCC---------------cccccChhHhcccCCCCEEEcCCC-cCCCcChhH---hccCCcccEEECcCC
Confidence            8999999999876               111222 22367899999999985 466555433   456899999999988


Q ss_pred             CCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCC
Q 037794          164 ANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLP  224 (293)
Q Consensus       164 ~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~  224 (293)
                      . +..+ +...+.++++|++|++.++ .++.++. ..+.        .+++|++|++.+.+
T Consensus       142 ~-l~~~-~~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~--------~l~~L~~L~l~~N~  190 (251)
T 3m19_A          142 Q-LQSI-PAGAFDKLTNLQTLSLSTN-QLQSVPH-GAFD--------RLGKLQTITLFGNQ  190 (251)
T ss_dssp             C-CCCC-CTTTTTTCTTCCEEECCSS-CCSCCCT-TTTT--------TCTTCCEEECCSCC
T ss_pred             c-CCcc-CHHHcCcCcCCCEEECCCC-cCCccCH-HHHh--------CCCCCCEEEeeCCc
Confidence            5 4454 6556888999999999994 5655542 1222        23899999998753

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.22  E-value=5.1e-12  Score=118.98  Aligned_cols=38  Identities=21%  Similarity=0.099  Sum_probs=24.1

Q ss_pred             cCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCc
Q 037794          151 FFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNC  189 (293)
Q Consensus       151 ~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c  189 (293)
                      .+++|++|++++|. +.+......+..+++|++|++.+|
T Consensus       287 ~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~  324 (594)
T 2p1m_B          287 VCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY  324 (594)
T ss_dssp             HHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred             hhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc
Confidence            35777888887777 443222334556777777777765

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.21  E-value=1.8e-10  Score=99.06  Aligned_cols=172  Identities=12%  Similarity=0.187  Sum_probs=119.2

Q ss_pred             cccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccCccCCCCeeEEEeccccccccccccCccchhhh
Q 037794           35 AFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTI  114 (293)
Q Consensus        35 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~  114 (293)
                      .+++|+.|+++++. +..++.   ...+++|+.|++++| .++.++. +..+++|+.|.++++               .+
T Consensus        44 ~l~~L~~L~l~~~~-i~~~~~---~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n---------------~l  102 (291)
T 1h6t_A           44 ELNSIDQIIANNSD-IKSVQG---IQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDEN---------------KV  102 (291)
T ss_dssp             HHHTCCEEECTTSC-CCCCTT---GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS---------------CC
T ss_pred             hcCcccEEEccCCC-cccChh---HhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCC---------------cC
Confidence            47788888888763 444432   457889999999886 4565554 778899999998876               11


Q ss_pred             hhhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccc
Q 037794          115 QKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEE  194 (293)
Q Consensus       115 ~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~  194 (293)
                      ..+ +.+..+++|+.|+++++. ++.++  .   +..+++|++|++++|.. ..+   ..+..+++|+.|++++| .++.
T Consensus       103 ~~~-~~l~~l~~L~~L~L~~n~-i~~~~--~---l~~l~~L~~L~l~~n~l-~~~---~~l~~l~~L~~L~L~~N-~l~~  170 (291)
T 1h6t_A          103 KDL-SSLKDLKKLKSLSLEHNG-ISDIN--G---LVHLPQLESLYLGNNKI-TDI---TVLSRLTKLDTLSLEDN-QISD  170 (291)
T ss_dssp             CCG-GGGTTCTTCCEEECTTSC-CCCCG--G---GGGCTTCCEEECCSSCC-CCC---GGGGGCTTCSEEECCSS-CCCC
T ss_pred             CCC-hhhccCCCCCEEECCCCc-CCCCh--h---hcCCCCCCEEEccCCcC-Ccc---hhhccCCCCCEEEccCC-cccc
Confidence            111 235678899999998864 44432  1   45678899999988853 332   34778899999999985 4555


Q ss_pred             cccccccccccccCCCCCCcccEEecCCCCCCceeccCCCccccCCCcceEeeecCCCcccc
Q 037794          195 VLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETF  256 (293)
Q Consensus       195 i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l  256 (293)
                      ++.   +.        .+++|++|++.++ .++++    ..+..+++|+.|++++++ +...
T Consensus       171 ~~~---l~--------~l~~L~~L~L~~N-~i~~l----~~l~~l~~L~~L~l~~n~-i~~~  215 (291)
T 1h6t_A          171 IVP---LA--------GLTKLQNLYLSKN-HISDL----RALAGLKNLDVLELFSQE-CLNK  215 (291)
T ss_dssp             CGG---GT--------TCTTCCEEECCSS-CCCBC----GGGTTCTTCSEEEEEEEE-EECC
T ss_pred             chh---hc--------CCCccCEEECCCC-cCCCC----hhhccCCCCCEEECcCCc-ccCC
Confidence            432   11        2489999999886 67665    357788999999998873 4433

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.18  E-value=6.7e-12  Score=118.18  Aligned_cols=92  Identities=12%  Similarity=0.103  Sum_probs=47.4

Q ss_pred             CCCccEEEeccCCC-CCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceec
Q 037794          152 FNNLFKLVVDDCAN-MSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFC  230 (293)
Q Consensus       152 l~~L~~L~i~~c~~-l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~  230 (293)
                      +++|++|++++|.. +.+..+..+...+++|++|++.+|. +++..- ....       ..+++|++|++++|+ ++...
T Consensus       435 ~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~-~~~~-------~~~~~L~~L~l~~n~-l~~~~  504 (592)
T 3ogk_B          435 CKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGL-MEFS-------RGCPNLQKLEMRGCC-FSERA  504 (592)
T ss_dssp             CTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHH-HHHH-------TCCTTCCEEEEESCC-CBHHH
T ss_pred             CCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHH-HHHH-------hcCcccCeeeccCCC-CcHHH
Confidence            46666666655542 2222223333446666666666543 222100 0000       123788888888876 54311


Q ss_pred             cCCCccccCCCcceEeeecCCCccc
Q 037794          231 NFTGNIIEMPMLWSLTIENCPDMET  255 (293)
Q Consensus       231 ~~~~~~~~l~~L~~L~i~~C~~L~~  255 (293)
                      . +.....+++|++|++++|+ ++.
T Consensus       505 ~-~~~~~~l~~L~~L~ls~n~-it~  527 (592)
T 3ogk_B          505 I-AAAVTKLPSLRYLWVQGYR-ASM  527 (592)
T ss_dssp             H-HHHHHHCSSCCEEEEESCB-CCT
T ss_pred             H-HHHHHhcCccCeeECcCCc-CCH
Confidence            0 1223467888888888885 544

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.18  E-value=6.2e-12  Score=118.40  Aligned_cols=37  Identities=16%  Similarity=0.178  Sum_probs=23.2

Q ss_pred             CcccEEecCCCCCCceeccCCCcc-ccCCCcceEeeecCCC
Q 037794          213 PRLFILRLIDLPKLKRFCNFTGNI-IEMPMLWSLTIENCPD  252 (293)
Q Consensus       213 ~~L~~L~l~~~~~l~~~~~~~~~~-~~l~~L~~L~i~~C~~  252 (293)
                      ++|++|++.+|. +++...  ..+ ..+++|++|++++|+-
T Consensus       456 ~~L~~L~L~~~~-i~~~~~--~~l~~~~~~L~~L~L~~n~~  493 (594)
T 2p1m_B          456 KKMEMLSVAFAG-DSDLGM--HHVLSGCDSLRKLEIRDCPF  493 (594)
T ss_dssp             TTCCEEEEESCC-SSHHHH--HHHHHHCTTCCEEEEESCSC
T ss_pred             hhccEeeccCCC-CcHHHH--HHHHhcCCCcCEEECcCCCC
Confidence            667777776654 332111  122 4588999999999863

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.18  E-value=1.6e-10  Score=108.39  Aligned_cols=196  Identities=16%  Similarity=0.171  Sum_probs=138.9

Q ss_pred             CcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccCccC
Q 037794            6 SLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGIVS   85 (293)
Q Consensus         6 ~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~   85 (293)
                      +|++|+++++ .++.+|...          +++|+.|+++++. +..++ .    .+++|+.|+++++ .++.+|. +..
T Consensus        60 ~L~~L~Ls~n-~L~~lp~~l----------~~~L~~L~Ls~N~-l~~ip-~----~l~~L~~L~Ls~N-~l~~ip~-l~~  120 (571)
T 3cvr_A           60 QFSELQLNRL-NLSSLPDNL----------PPQITVLEITQNA-LISLP-E----LPASLEYLDACDN-RLSTLPE-LPA  120 (571)
T ss_dssp             TCSEEECCSS-CCSCCCSCC----------CTTCSEEECCSSC-CSCCC-C----CCTTCCEEECCSS-CCSCCCC-CCT
T ss_pred             CccEEEeCCC-CCCccCHhH----------cCCCCEEECcCCC-Ccccc-c----ccCCCCEEEccCC-CCCCcch-hhc
Confidence            7889999987 566666532          5789999998874 55666 3    5789999999986 5777876 433


Q ss_pred             CCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCC
Q 037794           86 TPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCAN  165 (293)
Q Consensus        86 ~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~  165 (293)
                        +|+.|+++++               .+..++.   .+++|+.|+++++. ++.++      . .+++|++|++++|. 
T Consensus       121 --~L~~L~Ls~N---------------~l~~lp~---~l~~L~~L~Ls~N~-l~~lp------~-~l~~L~~L~Ls~N~-  171 (571)
T 3cvr_A          121 --SLKHLDVDNN---------------QLTMLPE---LPALLEYINADNNQ-LTMLP------E-LPTSLEVLSVRNNQ-  171 (571)
T ss_dssp             --TCCEEECCSS---------------CCSCCCC---CCTTCCEEECCSSC-CSCCC------C-CCTTCCEEECCSSC-
T ss_pred             --CCCEEECCCC---------------cCCCCCC---cCccccEEeCCCCc-cCcCC------C-cCCCcCEEECCCCC-
Confidence              8999999875               1222333   57899999999854 55443      2 45899999999986 


Q ss_pred             CCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceeccCCCccccCCCcceE
Q 037794          166 MSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSL  245 (293)
Q Consensus       166 l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L  245 (293)
                      +.. +|.  +.  ++|+.|++.++ .++.++.   +..  . -....+.|+.|++.++ .++.++   ..+..+++|+.|
T Consensus       172 L~~-lp~--l~--~~L~~L~Ls~N-~L~~lp~---~~~--~-L~~~~~~L~~L~Ls~N-~l~~lp---~~l~~l~~L~~L  235 (571)
T 3cvr_A          172 LTF-LPE--LP--ESLEALDVSTN-LLESLPA---VPV--R-NHHSEETEIFFRCREN-RITHIP---ENILSLDPTCTI  235 (571)
T ss_dssp             CSC-CCC--CC--TTCCEEECCSS-CCSSCCC---CC-----------CCEEEECCSS-CCCCCC---GGGGGSCTTEEE
T ss_pred             CCC-cch--hh--CCCCEEECcCC-CCCchhh---HHH--h-hhcccccceEEecCCC-cceecC---HHHhcCCCCCEE
Confidence            444 365  43  89999999994 6666653   110  0 0001134499999985 677765   567779999999


Q ss_pred             eeecCCCccccccccchhhcc
Q 037794          246 TIENCPDMETFISNSVLHVTT  266 (293)
Q Consensus       246 ~i~~C~~L~~l~p~~l~~l~~  266 (293)
                      +++++ +++...|..++.+..
T Consensus       236 ~L~~N-~l~~~~p~~l~~l~~  255 (571)
T 3cvr_A          236 ILEDN-PLSSRIRESLSQQTA  255 (571)
T ss_dssp             ECCSS-SCCHHHHHHHHHHHH
T ss_pred             EeeCC-cCCCcCHHHHHHhhc
Confidence            99998 476655888888765

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.15  E-value=2.1e-11  Score=114.82  Aligned_cols=91  Identities=16%  Similarity=0.049  Sum_probs=44.6

Q ss_pred             CCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCC---------
Q 037794          152 FNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLID---------  222 (293)
Q Consensus       152 l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~---------  222 (293)
                      +++|++|++++|. +.+......+.++++|++|++.++..-..+.   ....       .+++|++|++.+         
T Consensus       292 ~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~---~~~~-------~~~~L~~L~L~~g~~~~~~~~  360 (592)
T 3ogk_B          292 AAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNVIGDRGLE---VLAQ-------YCKQLKRLRIERGADEQGMED  360 (592)
T ss_dssp             GGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHH---HHHH-------HCTTCCEEEEECCCCSSTTSS
T ss_pred             cCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccCccCHHHHH---HHHH-------hCCCCCEEEeecCcccccccc
Confidence            4556666666555 3221122234556666666665321111110   0000       237788888875         


Q ss_pred             -CCCCceeccCCCccccCCCcceEeeecCCCccc
Q 037794          223 -LPKLKRFCNFTGNIIEMPMLWSLTIENCPDMET  255 (293)
Q Consensus       223 -~~~l~~~~~~~~~~~~l~~L~~L~i~~C~~L~~  255 (293)
                       |..++.... ......+++|++|++ +|.+++.
T Consensus       361 ~~~~~~~~~~-~~l~~~~~~L~~L~l-~~~~l~~  392 (592)
T 3ogk_B          361 EEGLVSQRGL-IALAQGCQELEYMAV-YVSDITN  392 (592)
T ss_dssp             TTCCCCHHHH-HHHHHHCTTCSEEEE-EESCCCH
T ss_pred             ccCccCHHHH-HHHHhhCccCeEEEe-ecCCccH
Confidence             666654211 011345788888888 4556654

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.14  E-value=6.8e-10  Score=104.86  Aligned_cols=195  Identities=13%  Similarity=0.117  Sum_probs=94.4

Q ss_pred             ccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccCccCCCCeeEEEeccccccccccccCc-------
Q 037794           36 FNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKKEEDELHHWEGN-------  108 (293)
Q Consensus        36 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~L~~L~l~~c~~~~~~~~~~~-------  108 (293)
                      +++|+.+++++...............+.+|+.+++..+. ...++.....+++|+.+.+..+...........       
T Consensus       370 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~-~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~  448 (635)
T 4g8a_A          370 LPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI  448 (635)
T ss_dssp             CTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCS-EEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCC
T ss_pred             ccccccchhhccccccccccccchhhhhhhhhhhccccc-cccccccccccccccchhhhhccccccccccccccccccc
Confidence            566666666554321111111112345666666666543 333444455667777777665421111100000       


Q ss_pred             --c--chhhhhhhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeE
Q 037794          109 --K--LNSTIQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWL  184 (293)
Q Consensus       109 --~--~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L  184 (293)
                        .  .+............+++|+.|+++++.....+....   +..+++|++|++++|. +..+ +...+.++++|++|
T Consensus       449 ~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~---~~~l~~L~~L~Ls~N~-L~~l-~~~~f~~l~~L~~L  523 (635)
T 4g8a_A          449 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI---FTELRNLTFLDLSQCQ-LEQL-SPTAFNSLSSLQVL  523 (635)
T ss_dssp             EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSC---CTTCTTCCEEECTTSC-CCEE-CTTTTTTCTTCCEE
T ss_pred             cccccccccccccccccccchhhhhhhhhhcccccccCchh---hhhccccCEEECCCCc-cCCc-ChHHHcCCCCCCEE
Confidence              0  000000111223445666677766654333332222   4456677777777664 4443 33346667777777


Q ss_pred             EecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceeccCCCccccC-CCcceEeeec
Q 037794          185 EVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEM-PMLWSLTIEN  249 (293)
Q Consensus       185 ~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l-~~L~~L~i~~  249 (293)
                      +++++ +++.++. ..+.        .+++|++|++++. .++.+..  ..+..+ ++|+.|++++
T Consensus       524 ~Ls~N-~l~~l~~-~~~~--------~l~~L~~L~Ls~N-~l~~~~~--~~l~~l~~~L~~L~L~~  576 (635)
T 4g8a_A          524 NMSHN-NFFSLDT-FPYK--------CLNSLQVLDYSLN-HIMTSKK--QELQHFPSSLAFLNLTQ  576 (635)
T ss_dssp             ECTTS-CCCBCCC-GGGT--------TCTTCCEEECTTS-CCCBCCS--SCTTCCCTTCCEEECTT
T ss_pred             ECCCC-cCCCCCh-hHHh--------CCCCCCEEECCCC-cCCCCCH--HHHHhhhCcCCEEEeeC
Confidence            77763 4544431 1111        1267777777763 4555433  445555 4677777765

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.13  E-value=2.7e-10  Score=98.04  Aligned_cols=166  Identities=19%  Similarity=0.241  Sum_probs=120.8

Q ss_pred             CCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccCc
Q 037794            4 PNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGI   83 (293)
Q Consensus         4 l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~   83 (293)
                      +++|++|++++| .++.++.         ...+++|+.|+++++. +..++.   ...+++|+.|+++++ .++.+|. +
T Consensus        45 l~~L~~L~l~~~-~i~~~~~---------~~~l~~L~~L~L~~n~-l~~~~~---l~~l~~L~~L~l~~n-~l~~~~~-l  108 (291)
T 1h6t_A           45 LNSIDQIIANNS-DIKSVQG---------IQYLPNVTKLFLNGNK-LTDIKP---LANLKNLGWLFLDEN-KVKDLSS-L  108 (291)
T ss_dssp             HHTCCEEECTTS-CCCCCTT---------GGGCTTCCEEECCSSC-CCCCGG---GTTCTTCCEEECCSS-CCCCGGG-G
T ss_pred             cCcccEEEccCC-CcccChh---------HhcCCCCCEEEccCCc-cCCCcc---cccCCCCCEEECCCC-cCCCChh-h
Confidence            567899999987 5565542         2238999999999874 444443   458999999999987 4666644 7


Q ss_pred             cCCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccC
Q 037794           84 VSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDC  163 (293)
Q Consensus        84 ~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c  163 (293)
                      ..+++|+.|+++++               .+..+ ..+..+++|+.|+++++. ++.+.  .   +..+++|++|++++|
T Consensus       109 ~~l~~L~~L~L~~n---------------~i~~~-~~l~~l~~L~~L~l~~n~-l~~~~--~---l~~l~~L~~L~L~~N  166 (291)
T 1h6t_A          109 KDLKKLKSLSLEHN---------------GISDI-NGLVHLPQLESLYLGNNK-ITDIT--V---LSRLTKLDTLSLEDN  166 (291)
T ss_dssp             TTCTTCCEEECTTS---------------CCCCC-GGGGGCTTCCEEECCSSC-CCCCG--G---GGGCTTCSEEECCSS
T ss_pred             ccCCCCCEEECCCC---------------cCCCC-hhhcCCCCCCEEEccCCc-CCcch--h---hccCCCCCEEEccCC
Confidence            88999999999987               11111 234678999999999864 55442  1   557899999999988


Q ss_pred             CCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCC
Q 037794          164 ANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDL  223 (293)
Q Consensus       164 ~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~  223 (293)
                      . +.++ +.  +..+++|+.|+++++ .++.++.   +.        .+++|+.|++.++
T Consensus       167 ~-l~~~-~~--l~~l~~L~~L~L~~N-~i~~l~~---l~--------~l~~L~~L~l~~n  210 (291)
T 1h6t_A          167 Q-ISDI-VP--LAGLTKLQNLYLSKN-HISDLRA---LA--------GLKNLDVLELFSQ  210 (291)
T ss_dssp             C-CCCC-GG--GTTCTTCCEEECCSS-CCCBCGG---GT--------TCTTCSEEEEEEE
T ss_pred             c-cccc-hh--hcCCCccCEEECCCC-cCCCChh---hc--------cCCCCCEEECcCC
Confidence            5 4443 33  788999999999995 5666532   21        2489999999875

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.12  E-value=5.5e-10  Score=105.54  Aligned_cols=159  Identities=15%  Similarity=0.153  Sum_probs=99.8

Q ss_pred             ccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccCccCCCCeeEEEeccccccccccccCccchhhhh
Q 037794           36 FNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQ  115 (293)
Q Consensus        36 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~  115 (293)
                      +++|+.+++..+...... .......+++++.++++.+..-...+.....+++|+.|.++++              ....
T Consensus       419 l~~L~~l~l~~~~~~~~~-~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N--------------~~~~  483 (635)
T 4g8a_A          419 LEQLEHLDFQHSNLKQMS-EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN--------------SFQE  483 (635)
T ss_dssp             CTTCCEEECTTSEEESTT-SSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC--------------EEGG
T ss_pred             cccccchhhhhccccccc-cccccccccccccccccccccccccccccccchhhhhhhhhhc--------------cccc
Confidence            445555555443322211 1112335566666666665333333444556677777777765              1111


Q ss_pred             h-hhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccc
Q 037794          116 K-RYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEE  194 (293)
Q Consensus       116 ~-l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~  194 (293)
                      . .+..+..+++|+.|+++++ .++.+....   +..+++|++|+++++. +..+ +...+.++++|+.|++++ +.++.
T Consensus       484 ~~~~~~~~~l~~L~~L~Ls~N-~L~~l~~~~---f~~l~~L~~L~Ls~N~-l~~l-~~~~~~~l~~L~~L~Ls~-N~l~~  556 (635)
T 4g8a_A          484 NFLPDIFTELRNLTFLDLSQC-QLEQLSPTA---FNSLSSLQVLNMSHNN-FFSL-DTFPYKCLNSLQVLDYSL-NHIMT  556 (635)
T ss_dssp             GEECSCCTTCTTCCEEECTTS-CCCEECTTT---TTTCTTCCEEECTTSC-CCBC-CCGGGTTCTTCCEEECTT-SCCCB
T ss_pred             ccCchhhhhccccCEEECCCC-ccCCcChHH---HcCCCCCCEEECCCCc-CCCC-ChhHHhCCCCCCEEECCC-CcCCC
Confidence            1 2234567899999999996 477776555   6688999999999885 5554 555688999999999999 55655


Q ss_pred             cccccccccccccCCCCCCcccEEecCCCC
Q 037794          195 VLHLEELNADKEHIGPLFPRLFILRLIDLP  224 (293)
Q Consensus       195 i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~  224 (293)
                      ++. +.+..       .+++|++|++.+.+
T Consensus       557 ~~~-~~l~~-------l~~~L~~L~L~~Np  578 (635)
T 4g8a_A          557 SKK-QELQH-------FPSSLAFLNLTQND  578 (635)
T ss_dssp             CCS-SCTTC-------CCTTCCEEECTTCC
T ss_pred             CCH-HHHHh-------hhCcCCEEEeeCCC
Confidence            542 22222       33689999998643

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.12  E-value=1.1e-10  Score=101.14  Aligned_cols=197  Identities=13%  Similarity=0.077  Sum_probs=118.6

Q ss_pred             cCCCcceEeEcCCCCccccccCc--cCCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCCCCc
Q 037794           61 EFPSLERVFVTRCPNMKTFSQGI--VSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRL  138 (293)
Q Consensus        61 ~~~~L~~L~i~~c~~l~~lp~~~--~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l  138 (293)
                      .+++|++|++++|.-....|..+  ..+++|+.|+++++.-.      +. . .....  .....+++|++|+++++. +
T Consensus        89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~------~~-~-~~~~~--~~~~~~~~L~~L~Ls~n~-l  157 (310)
T 4glp_A           89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWA------TG-R-SWLAE--LQQWLKPGLKVLSIAQAH-S  157 (310)
T ss_dssp             HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCS------ST-T-SSHHH--HHTTBCSCCCEEEEECCS-S
T ss_pred             ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeeccccc------ch-h-hhhHH--HHhhhccCCCEEEeeCCC-c
Confidence            45779999999886555566655  77899999999876110      00 0 00000  122468899999998865 4


Q ss_pred             eEeccCCCCCcccCCCccEEEeccCCCCCc--cCChhHHhccCCCCeEEecCcccccccccc-cccccccccCCCCCCcc
Q 037794          139 KEIWHGQALPVSFFNNLFKLVVDDCANMSS--AIPANLLRCLSNLRWLEVRNCDSLEEVLHL-EELNADKEHIGPLFPRL  215 (293)
Q Consensus       139 ~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~--~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~-~~~~~~~~~~~~~f~~L  215 (293)
                      ..++...   +..+++|++|+++++.....  +.+...+..+++|++|++++| .++.++.. .....       .+++|
T Consensus       158 ~~~~~~~---~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~-------~l~~L  226 (310)
T 4glp_A          158 PAFSCEQ---VRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAALAA-------AGVQP  226 (310)
T ss_dssp             CCCCTTS---CCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHH-------HTCCC
T ss_pred             chhhHHH---hccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHHHh-------cCCCC
Confidence            5444333   55788999999998875432  111122357889999999985 45444321 00000       23889


Q ss_pred             cEEecCCCCCCceeccCCCccccC---CCcceEeeecCCCccccccc----cchhhccCCCCCccccccccccccc
Q 037794          216 FILRLIDLPKLKRFCNFTGNIIEM---PMLWSLTIENCPDMETFISN----SVLHVTTDNKEPQKLTSEENFLLAH  284 (293)
Q Consensus       216 ~~L~l~~~~~l~~~~~~~~~~~~l---~~L~~L~i~~C~~L~~l~p~----~l~~l~~~~~~~~~l~~~~~~~~~~  284 (293)
                      ++|+++++ .++.+.  |..+..+   ++|++|++++| +++.+ |.    .++.+....+....+.....+|.+.
T Consensus       227 ~~L~Ls~N-~l~~~~--p~~~~~~~~~~~L~~L~Ls~N-~l~~l-p~~~~~~L~~L~Ls~N~l~~~~~~~~l~~L~  297 (310)
T 4glp_A          227 HSLDLSHN-SLRATV--NPSAPRCMWSSALNSLNLSFA-GLEQV-PKGLPAKLRVLDLSSNRLNRAPQPDELPEVD  297 (310)
T ss_dssp             SSEECTTS-CCCCCC--CSCCSSCCCCTTCCCEECCSS-CCCSC-CSCCCSCCSCEECCSCCCCSCCCTTSCCCCS
T ss_pred             CEEECCCC-CCCccc--hhhHHhccCcCcCCEEECCCC-CCCch-hhhhcCCCCEEECCCCcCCCCchhhhCCCcc
Confidence            99999885 455541  1333444   79999999987 68887 54    4555555444444433334444433

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.12  E-value=3.6e-10  Score=106.88  Aligned_cols=166  Identities=13%  Similarity=0.210  Sum_probs=82.7

Q ss_pred             ccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccCccCCCCeeEEEeccccccccccccCccchhhhh
Q 037794           36 FNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQ  115 (293)
Q Consensus        36 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~  115 (293)
                      +++|+.|.+.++. +..++.   ...+++|+.|++++| .+..++. +..+++|+.|.+++| .              +.
T Consensus        42 L~~L~~L~l~~n~-i~~l~~---l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N-~--------------l~  100 (605)
T 1m9s_A           42 LNSIDQIIANNSD-IKSVQG---IQYLPNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLDEN-K--------------IK  100 (605)
T ss_dssp             HTTCCCCBCTTCC-CCCCTT---GGGCTTCCEEECTTS-CCCCCGG-GGGCTTCCEEECCSS-C--------------CC
T ss_pred             CCCCCEEECcCCC-CCCChH---HccCCCCCEEEeeCC-CCCCChh-hccCCCCCEEECcCC-C--------------CC
Confidence            5556666665543 233321   335666666666654 3443433 455666666666654 0              01


Q ss_pred             hhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCccccccc
Q 037794          116 KRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEV  195 (293)
Q Consensus       116 ~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i  195 (293)
                      .+ +.+..+++|+.|+++++. +..++     ++..+++|+.|++++|.. ..+   ..+..+++|+.|++++| .+..+
T Consensus       101 ~l-~~l~~l~~L~~L~Ls~N~-l~~l~-----~l~~l~~L~~L~Ls~N~l-~~l---~~l~~l~~L~~L~Ls~N-~l~~~  168 (605)
T 1m9s_A          101 DL-SSLKDLKKLKSLSLEHNG-ISDIN-----GLVHLPQLESLYLGNNKI-TDI---TVLSRLTKLDTLSLEDN-QISDI  168 (605)
T ss_dssp             CC-TTSTTCTTCCEEECTTSC-CCCCG-----GGGGCTTCSEEECCSSCC-CCC---GGGGSCTTCSEEECCSS-CCCCC
T ss_pred             CC-hhhccCCCCCEEEecCCC-CCCCc-----cccCCCccCEEECCCCcc-CCc---hhhcccCCCCEEECcCC-cCCCc
Confidence            11 123455666666666543 33221     133456666666666542 221   23555666666666663 23333


Q ss_pred             ccccccccccccCCCCCCcccEEecCCCCCCceeccCCCccccCCCcceEeeecC
Q 037794          196 LHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENC  250 (293)
Q Consensus       196 ~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C  250 (293)
                      +.   +.        .+++|+.|+++++ .++.+    ..+..+++|+.|++++|
T Consensus       169 ~~---l~--------~l~~L~~L~Ls~N-~i~~l----~~l~~l~~L~~L~L~~N  207 (605)
T 1m9s_A          169 VP---LA--------GLTKLQNLYLSKN-HISDL----RALAGLKNLDVLELFSQ  207 (605)
T ss_dssp             GG---GT--------TCTTCCEEECCSS-CCCBC----GGGTTCTTCSEEECCSE
T ss_pred             hh---hc--------cCCCCCEEECcCC-CCCCC----hHHccCCCCCEEEccCC
Confidence            21   11        2266666666664 44443    24555666666666655

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.11  E-value=2.6e-11  Score=108.43  Aligned_cols=91  Identities=15%  Similarity=0.113  Sum_probs=53.1

Q ss_pred             CCCCcceEeccccccceEeccccccccccccccccccceeeccccc--cccc-cccc-----cccccCCCcceEeEcCCC
Q 037794            3 IPNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLP--RLTS-FCLE-----NYTLEFPSLERVFVTRCP   74 (293)
Q Consensus         3 ~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~--~l~~-~~~~-----~~~~~~~~L~~L~i~~c~   74 (293)
                      .+++|++|++++| .+........   +.....+++|++|+++++.  .+.. ++..     .....+++|++|+++++.
T Consensus        30 ~~~~L~~L~L~~n-~i~~~~~~~l---~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~  105 (386)
T 2ca6_A           30 EDDSVKEIVLSGN-TIGTEAARWL---SENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA  105 (386)
T ss_dssp             HCSCCCEEECTTS-EECHHHHHHH---HHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred             cCCCccEEECCCC-CCCHHHHHHH---HHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence            3578889999887 3332211100   0112237888888888762  2221 1111     112467888888888864


Q ss_pred             Ccc----ccccCccCCCCeeEEEeccc
Q 037794           75 NMK----TFSQGIVSTPKLHEVQVSKK   97 (293)
Q Consensus        75 ~l~----~lp~~~~~~~~L~~L~l~~c   97 (293)
                      --.    .+|..+..+++|+.|++++|
T Consensus       106 l~~~~~~~l~~~l~~~~~L~~L~L~~n  132 (386)
T 2ca6_A          106 FGPTAQEPLIDFLSKHTPLEHLYLHNN  132 (386)
T ss_dssp             CCTTTHHHHHHHHHHCTTCCEEECCSS
T ss_pred             CCHHHHHHHHHHHHhCCCCCEEECcCC
Confidence            322    25556677888888888877

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.08  E-value=5.6e-10  Score=105.52  Aligned_cols=168  Identities=19%  Similarity=0.224  Sum_probs=121.1

Q ss_pred             CCCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccC
Q 037794            3 IPNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQG   82 (293)
Q Consensus         3 ~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~   82 (293)
                      .+++|++|++++| .+..++.         +..+++|+.|+++++. +..++.   ...+++|+.|++++| .+..+| .
T Consensus        41 ~L~~L~~L~l~~n-~i~~l~~---------l~~l~~L~~L~Ls~N~-l~~~~~---l~~l~~L~~L~Ls~N-~l~~l~-~  104 (605)
T 1m9s_A           41 ELNSIDQIIANNS-DIKSVQG---------IQYLPNVTKLFLNGNK-LTDIKP---LTNLKNLGWLFLDEN-KIKDLS-S  104 (605)
T ss_dssp             HHTTCCCCBCTTC-CCCCCTT---------GGGCTTCCEEECTTSC-CCCCGG---GGGCTTCCEEECCSS-CCCCCT-T
T ss_pred             cCCCCCEEECcCC-CCCCChH---------HccCCCCCEEEeeCCC-CCCChh---hccCCCCCEEECcCC-CCCCCh-h
Confidence            3678889999887 4555542         2238999999999874 444443   458999999999997 566664 6


Q ss_pred             ccCCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEecc
Q 037794           83 IVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDD  162 (293)
Q Consensus        83 ~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~  162 (293)
                      +..+++|+.|++++|.               +..+ +.+..+++|+.|+++++. +..+.  .   +..+++|+.|++++
T Consensus       105 l~~l~~L~~L~Ls~N~---------------l~~l-~~l~~l~~L~~L~Ls~N~-l~~l~--~---l~~l~~L~~L~Ls~  162 (605)
T 1m9s_A          105 LKDLKKLKSLSLEHNG---------------ISDI-NGLVHLPQLESLYLGNNK-ITDIT--V---LSRLTKLDTLSLED  162 (605)
T ss_dssp             STTCTTCCEEECTTSC---------------CCCC-GGGGGCTTCSEEECCSSC-CCCCG--G---GGSCTTCSEEECCS
T ss_pred             hccCCCCCEEEecCCC---------------CCCC-ccccCCCccCEEECCCCc-cCCch--h---hcccCCCCEEECcC
Confidence            7889999999999871               1111 235678999999999864 55442  1   55789999999998


Q ss_pred             CCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCC
Q 037794          163 CANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLP  224 (293)
Q Consensus       163 c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~  224 (293)
                      |.. ..+ +.  +..+++|+.|++++| .+..++.   +.        .+++|+.|++.+++
T Consensus       163 N~l-~~~-~~--l~~l~~L~~L~Ls~N-~i~~l~~---l~--------~l~~L~~L~L~~N~  208 (605)
T 1m9s_A          163 NQI-SDI-VP--LAGLTKLQNLYLSKN-HISDLRA---LA--------GLKNLDVLELFSQE  208 (605)
T ss_dssp             SCC-CCC-GG--GTTCTTCCEEECCSS-CCCBCGG---GT--------TCTTCSEEECCSEE
T ss_pred             CcC-CCc-hh--hccCCCCCEEECcCC-CCCCChH---Hc--------cCCCCCEEEccCCc
Confidence            864 443 32  778999999999995 4555532   21        24899999998863

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.07  E-value=2.1e-11  Score=109.06  Aligned_cols=226  Identities=15%  Similarity=0.142  Sum_probs=110.5

Q ss_pred             CCCCCcceEecccc--ccce-Eeccccccccccccccccccceeecccccccc----ccccccccccCCCcceEeEcCCC
Q 037794            2 GIPNSLVNLNVSYC--EKIE-EIIGHVGEEAKENRIAFNELKFLELDDLPRLT----SFCLENYTLEFPSLERVFVTRCP   74 (293)
Q Consensus         2 g~l~~L~~L~l~~c--~~l~-~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~----~~~~~~~~~~~~~L~~L~i~~c~   74 (293)
                      ..+++|++|++++|  ..+. .+|.... ........+++|++|+++++..-.    .++.  ....+++|++|++++|.
T Consensus        57 ~~~~~L~~L~Ls~~~~~~l~~~~~~~~~-~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~--~l~~~~~L~~L~L~~n~  133 (386)
T 2ca6_A           57 ASKKDLEIAEFSDIFTGRVKDEIPEALR-LLLQALLKCPKLHTVRLSDNAFGPTAQEPLID--FLSKHTPLEHLYLHNNG  133 (386)
T ss_dssp             TTCTTCCEEECCSCCTTSCGGGSHHHHH-HHHHHHTTCTTCCEEECCSCCCCTTTHHHHHH--HHHHCTTCCEEECCSSC
T ss_pred             HhCCCccEEeCcccccCccccchhHHHH-HHHHHHhhCCcccEEECCCCcCCHHHHHHHHH--HHHhCCCCCEEECcCCC
Confidence            35677777777766  2221 1111110 000111236777777777654221    0111  13466777777777764


Q ss_pred             Ccc----ccccCccCC---------CCeeEEEeccccccccccccCccch-hhhhhhhhhhccCCCccEEEecCCCCceE
Q 037794           75 NMK----TFSQGIVST---------PKLHEVQVSKKEEDELHHWEGNKLN-STIQKRYEEMIGFRDIERLQLSHFPRLKE  140 (293)
Q Consensus        75 ~l~----~lp~~~~~~---------~~L~~L~l~~c~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~L~~L~l~~~~~l~~  140 (293)
                      --.    .++..+..+         ++|+.|.+++|.           +. .....+...+..+++|+.|+++++. ++.
T Consensus       134 l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~-----------l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~  201 (386)
T 2ca6_A          134 LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-----------LENGSMKEWAKTFQSHRLLHTVKMVQNG-IRP  201 (386)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC-----------CTGGGHHHHHHHHHHCTTCCEEECCSSC-CCH
T ss_pred             CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC-----------CCcHHHHHHHHHHHhCCCcCEEECcCCC-CCH
Confidence            311    122222333         677777777650           00 1122233445566777777777753 331


Q ss_pred             eccCCC--CCcccCCCccEEEeccCCCC----CccCChhHHhccCCCCeEEecCcccccccccc---cccccccccCCCC
Q 037794          141 IWHGQA--LPVSFFNNLFKLVVDDCANM----SSAIPANLLRCLSNLRWLEVRNCDSLEEVLHL---EELNADKEHIGPL  211 (293)
Q Consensus       141 ~~~~~~--~~~~~l~~L~~L~i~~c~~l----~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~---~~~~~~~~~~~~~  211 (293)
                      ......  -.+..+++|++|++++|..-    .. ++. .+..+++|++|++.+|. ++.....   ..+..      ..
T Consensus       202 ~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~-l~~-~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~------~~  272 (386)
T 2ca6_A          202 EGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSA-LAI-ALKSWPNLRELGLNDCL-LSARGAAAVVDAFSK------LE  272 (386)
T ss_dssp             HHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHH-HHH-HGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHT------CS
T ss_pred             hHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHH-HHH-HHccCCCcCEEECCCCC-CchhhHHHHHHHHhh------cc
Confidence            110000  01345677777777777532    22 132 35667777777777754 3332100   11000      01


Q ss_pred             CCcccEEecCCCCCCce-----eccCCCcc-ccCCCcceEeeecCCCcccc
Q 037794          212 FPRLFILRLIDLPKLKR-----FCNFTGNI-IEMPMLWSLTIENCPDMETF  256 (293)
Q Consensus       212 f~~L~~L~l~~~~~l~~-----~~~~~~~~-~~l~~L~~L~i~~C~~L~~l  256 (293)
                      +++|++|++.++ .++.     ++   ..+ .++++|++|++++| +++..
T Consensus       273 ~~~L~~L~L~~n-~i~~~g~~~l~---~~l~~~l~~L~~L~l~~N-~l~~~  318 (386)
T 2ca6_A          273 NIGLQTLRLQYN-EIELDAVRTLK---TVIDEKMPDLLFLELNGN-RFSEE  318 (386)
T ss_dssp             SCCCCEEECCSS-CCBHHHHHHHH---HHHHHHCTTCCEEECTTS-BSCTT
T ss_pred             CCCeEEEECcCC-cCCHHHHHHHH---HHHHhcCCCceEEEccCC-cCCcc
Confidence            377777777775 3443     33   233 45677777777776 35443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.06  E-value=8.2e-10  Score=89.98  Aligned_cols=168  Identities=16%  Similarity=0.151  Sum_probs=96.1

Q ss_pred             CCCcceEeEcCCCCcccccc-CccCCCCeeEEEeccccccccccccCccchhhhhhhhh-hhccCCCccEEEecCCCCce
Q 037794           62 FPSLERVFVTRCPNMKTFSQ-GIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYE-EMIGFRDIERLQLSHFPRLK  139 (293)
Q Consensus        62 ~~~L~~L~i~~c~~l~~lp~-~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~  139 (293)
                      .++|++|+++++ .++.++. .+..+++|+.|+++++               .+..++. .+..+++|++|+++++. ++
T Consensus        27 ~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n---------------~l~~~~~~~~~~l~~L~~L~Ls~n~-l~   89 (208)
T 2o6s_A           27 PAQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGN---------------KLQSLPNGVFNKLTSLTYLNLSTNQ-LQ   89 (208)
T ss_dssp             CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS---------------CCCCCCTTTTTTCTTCCEEECCSSC-CC
T ss_pred             CCCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCC---------------ccCccChhhcCCCCCcCEEECCCCc-CC
Confidence            345666666664 3444433 2345666666666654               1111111 12456667777776643 44


Q ss_pred             EeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEe
Q 037794          140 EIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILR  219 (293)
Q Consensus       140 ~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~  219 (293)
                      .++...   +..+++|++|+++++. +..+ +...+..+++|++|++.++ .++.++. ..+.        .+++|++|+
T Consensus        90 ~~~~~~---~~~l~~L~~L~L~~N~-l~~~-~~~~~~~l~~L~~L~l~~N-~l~~~~~-~~~~--------~l~~L~~L~  154 (208)
T 2o6s_A           90 SLPNGV---FDKLTQLKELALNTNQ-LQSL-PDGVFDKLTQLKDLRLYQN-QLKSVPD-GVFD--------RLTSLQYIW  154 (208)
T ss_dssp             CCCTTT---TTTCTTCCEEECCSSC-CCCC-CTTTTTTCTTCCEEECCSS-CCSCCCT-TTTT--------TCTTCCEEE
T ss_pred             ccCHhH---hcCccCCCEEEcCCCc-Cccc-CHhHhccCCcCCEEECCCC-ccceeCH-HHhc--------cCCCccEEE
Confidence            443222   4466788888887775 3333 5555677888888888874 4555432 1111        237888888


Q ss_pred             cCCCCCCceeccCCCccccCCCcceEeeecCCCccccccccchhhccCCCCCc
Q 037794          220 LIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVLHVTTDNKEPQ  272 (293)
Q Consensus       220 l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~p~~l~~l~~~~~~~~  272 (293)
                      +.+.+ +         ...+++|+.|+++.+ +++..+|.+++.+..+...|.
T Consensus       155 l~~N~-~---------~~~~~~l~~L~~~~n-~~~g~ip~~~~~l~~~~~~C~  196 (208)
T 2o6s_A          155 LHDNP-W---------DCTCPGIRYLSEWIN-KHSGVVRNSAGSVAPDSAKCS  196 (208)
T ss_dssp             CCSCC-B---------CCCTTTTHHHHHHHH-HCTTTBBCTTSSBCTTCSBBT
T ss_pred             ecCCC-e---------ecCCCCHHHHHHHHH-hCCceeeccCccccCCccccc
Confidence            87752 1         123467888888776 455434888888777555543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.01  E-value=1e-09  Score=92.94  Aligned_cols=165  Identities=18%  Similarity=0.272  Sum_probs=96.3

Q ss_pred             ccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccCccCCCCeeEEEeccccccccccccCccchhhhh
Q 037794           36 FNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQ  115 (293)
Q Consensus        36 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~  115 (293)
                      +.+++.+.+.+. .+++++.   ...+++|+.|++++| .++.+| .+..+++|+.|+++++               .+.
T Consensus        18 l~~l~~l~l~~~-~i~~~~~---~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N---------------~i~   76 (263)
T 1xeu_A           18 LANAVKQNLGKQ-SVTDLVS---QKELSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHN---------------QIS   76 (263)
T ss_dssp             HHHHHHHHHTCS-CTTSEEC---HHHHTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSS---------------CCC
T ss_pred             HHHHHHHHhcCC-Ccccccc---hhhcCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCC---------------ccC
Confidence            445555555543 2333331   336677777777775 455555 5566777777777765               111


Q ss_pred             hhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCccccccc
Q 037794          116 KRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEV  195 (293)
Q Consensus       116 ~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i  195 (293)
                      .+.. +..+++|+.|+++++. ++.++.     ... ++|++|++++|. +..+ +  .+..+++|+.|+++++ .++.+
T Consensus        77 ~~~~-l~~l~~L~~L~L~~N~-l~~l~~-----~~~-~~L~~L~L~~N~-l~~~-~--~l~~l~~L~~L~Ls~N-~i~~~  143 (263)
T 1xeu_A           77 DLSP-LKDLTKLEELSVNRNR-LKNLNG-----IPS-ACLSRLFLDNNE-LRDT-D--SLIHLKNLEILSIRNN-KLKSI  143 (263)
T ss_dssp             CCGG-GTTCSSCCEEECCSSC-CSCCTT-----CCC-SSCCEEECCSSC-CSBS-G--GGTTCTTCCEEECTTS-CCCBC
T ss_pred             CChh-hccCCCCCEEECCCCc-cCCcCc-----ccc-CcccEEEccCCc-cCCC-h--hhcCcccccEEECCCC-cCCCC
Confidence            2222 4567777777777743 444331     112 677788887774 3332 2  2666777888887773 45544


Q ss_pred             ccccccccccccCCCCCCcccEEecCCCCCCceeccCCCccccCCCcceEeeecC
Q 037794          196 LHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENC  250 (293)
Q Consensus       196 ~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C  250 (293)
                      +.   +.        .+++|++|+++++ .++.+    ..+..+++|+.|+++++
T Consensus       144 ~~---l~--------~l~~L~~L~L~~N-~i~~~----~~l~~l~~L~~L~l~~N  182 (263)
T 1xeu_A          144 VM---LG--------FLSKLEVLDLHGN-EITNT----GGLTRLKKVNWIDLTGQ  182 (263)
T ss_dssp             GG---GG--------GCTTCCEEECTTS-CCCBC----TTSTTCCCCCEEEEEEE
T ss_pred             hH---Hc--------cCCCCCEEECCCC-cCcch----HHhccCCCCCEEeCCCC
Confidence            31   11        2377778877774 45554    35566777777777775

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.01  E-value=2.6e-09  Score=88.49  Aligned_cols=108  Identities=18%  Similarity=0.169  Sum_probs=54.3

Q ss_pred             cCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccc
Q 037794          123 GFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELN  202 (293)
Q Consensus       123 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~  202 (293)
                      .+++|+.|+++++. +..++...   +..+++|++|+++++. +..+ +...+..+++|+.|++.+ ..++.++  .++.
T Consensus        62 ~l~~L~~L~L~~N~-l~~i~~~~---~~~l~~L~~L~Ls~N~-l~~l-~~~~~~~l~~L~~L~Ls~-N~l~~lp--~~~~  132 (229)
T 3e6j_A           62 SLINLKELYLGSNQ-LGALPVGV---FDSLTQLTVLDLGTNQ-LTVL-PSAVFDRLVHLKELFMCC-NKLTELP--RGIE  132 (229)
T ss_dssp             TCTTCCEEECCSSC-CCCCCTTT---TTTCTTCCEEECCSSC-CCCC-CTTTTTTCTTCCEEECCS-SCCCSCC--TTGG
T ss_pred             CccCCcEEECCCCC-CCCcChhh---cccCCCcCEEECCCCc-CCcc-ChhHhCcchhhCeEeccC-CcccccC--cccc
Confidence            34455555554432 33333222   3345666666666553 3332 444455566666666666 3344443  1111


Q ss_pred             cccccCCCCCCcccEEecCCCCCCceeccCCCccccCCCcceEeeecC
Q 037794          203 ADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENC  250 (293)
Q Consensus       203 ~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C  250 (293)
                              .+++|++|++++. .++.++.  ..+..+++|+.|++++.
T Consensus       133 --------~l~~L~~L~L~~N-~l~~~~~--~~~~~l~~L~~L~l~~N  169 (229)
T 3e6j_A          133 --------RLTHLTHLALDQN-QLKSIPH--GAFDRLSSLTHAYLFGN  169 (229)
T ss_dssp             --------GCTTCSEEECCSS-CCCCCCT--TTTTTCTTCCEEECTTS
T ss_pred             --------cCCCCCEEECCCC-cCCccCH--HHHhCCCCCCEEEeeCC
Confidence                    1266666666663 4555433  34555666666666654

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.98  E-value=5.3e-09  Score=86.11  Aligned_cols=33  Identities=12%  Similarity=0.286  Sum_probs=16.0

Q ss_pred             CCcceEeEcCCCCcccccc-CccCCCCeeEEEecc
Q 037794           63 PSLERVFVTRCPNMKTFSQ-GIVSTPKLHEVQVSK   96 (293)
Q Consensus        63 ~~L~~L~i~~c~~l~~lp~-~~~~~~~L~~L~l~~   96 (293)
                      ++|+.|+++++ .++.++. .+..+++|+.|++++
T Consensus        32 ~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~   65 (220)
T 2v9t_B           32 ETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSN   65 (220)
T ss_dssp             TTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCS
T ss_pred             cCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCC
Confidence            45555655553 3443332 334455555555554

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.97  E-value=1.9e-08  Score=87.87  Aligned_cols=56  Identities=5%  Similarity=0.026  Sum_probs=32.1

Q ss_pred             ccccceeeccccccccccccccccccCCCcceEeEcCCCCccccc-cCccCCCCeeEEEec
Q 037794           36 FNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFS-QGIVSTPKLHEVQVS   95 (293)
Q Consensus        36 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp-~~~~~~~~L~~L~l~   95 (293)
                      +++|+.+.+.+  .++.++.. +..++++|+.+.+.+. .+..++ ..+..+.++..+...
T Consensus       100 ~~~L~~l~L~~--~i~~I~~~-aF~~~~~L~~l~l~~n-~i~~i~~~aF~~~~~l~~l~~~  156 (329)
T 3sb4_A          100 KQTLEKVILSE--KIKNIEDA-AFKGCDNLKICQIRKK-TAPNLLPEALADSVTAIFIPLG  156 (329)
T ss_dssp             CTTCCC-CBCT--TCCEECTT-TTTTCTTCCEEEBCCS-SCCEECTTSSCTTTCEEEECTT
T ss_pred             cCCCcEEECCc--cccchhHH-HhhcCcccceEEcCCC-CccccchhhhcCCCceEEecCc
Confidence            67777777766  45555433 2446788888888764 333333 333455666666543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.96  E-value=3e-09  Score=83.57  Aligned_cols=99  Identities=19%  Similarity=0.217  Sum_probs=65.7

Q ss_pred             cccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCce
Q 037794          149 VSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKR  228 (293)
Q Consensus       149 ~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~  228 (293)
                      +..+++|++|++++|..... +|. .+..+++|+.|++.++ .++.++....+.        .+++|++|++.++ .++.
T Consensus        67 ~~~l~~L~~L~Ls~N~l~~~-~~~-~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~--------~l~~L~~L~l~~N-~l~~  134 (168)
T 2ell_A           67 LPKLPKLKKLELSENRIFGG-LDM-LAEKLPNLTHLNLSGN-KLKDISTLEPLK--------KLECLKSLDLFNC-EVTN  134 (168)
T ss_dssp             CCCCSSCCEEEEESCCCCSC-CCH-HHHHCTTCCEEECBSS-SCCSSGGGGGGS--------SCSCCCEEECCSS-GGGT
T ss_pred             hccCCCCCEEECcCCcCchH-HHH-HHhhCCCCCEEeccCC-ccCcchhHHHHh--------cCCCCCEEEeeCC-cCcc
Confidence            44568888889888865443 243 4666899999999985 565554222222        2388999999886 4554


Q ss_pred             eccCC-CccccCCCcceEeeecCCCccccccccc
Q 037794          229 FCNFT-GNIIEMPMLWSLTIENCPDMETFISNSV  261 (293)
Q Consensus       229 ~~~~~-~~~~~l~~L~~L~i~~C~~L~~l~p~~l  261 (293)
                      ++... ..+..+++|++|++++| .++.+ |...
T Consensus       135 ~~~~~~~~~~~l~~L~~L~l~~n-~~~~~-~~~~  166 (168)
T 2ell_A          135 LNDYRESVFKLLPQLTYLDGYDR-EDQEA-PDSD  166 (168)
T ss_dssp             STTHHHHHHTTCSSCCEETTEET-TSCBC-CSSS
T ss_pred             hHHHHHHHHHhCccCcEecCCCC-Chhhc-cccc
Confidence            43100 14677899999999998 56677 6543

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.96  E-value=5.8e-09  Score=85.90  Aligned_cols=129  Identities=11%  Similarity=0.157  Sum_probs=64.8

Q ss_pred             cccceeeccccccccccccccccccCCCcceEeEcCCCCcccccc-CccCCCCeeEEEeccccccccccccCccchhhhh
Q 037794           37 NELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQ-GIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQ  115 (293)
Q Consensus        37 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~-~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~  115 (293)
                      +.+++|+++++. +..+........+++|+.|+++++ .++.++. .+..+++|+.|+++++               .+.
T Consensus        32 ~~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N---------------~l~   94 (220)
T 2v70_A           32 QYTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSN---------------RLE   94 (220)
T ss_dssp             TTCSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS---------------CCC
T ss_pred             CCCCEEEcCCCc-CCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCC---------------ccC
Confidence            345666666643 344433222346667777777664 3444433 4556666666666654               111


Q ss_pred             hhh-hhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecC
Q 037794          116 KRY-EEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRN  188 (293)
Q Consensus       116 ~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~  188 (293)
                      .+. ..+..+++|++|+++++. +..+....   +..+++|++|+++++.. +.+ +...+..+++|+.|++.+
T Consensus        95 ~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~---~~~l~~L~~L~L~~N~l-~~~-~~~~~~~l~~L~~L~L~~  162 (220)
T 2v70_A           95 NVQHKMFKGLESLKTLMLRSNR-ITCVGNDS---FIGLSSVRLLSLYDNQI-TTV-APGAFDTLHSLSTLNLLA  162 (220)
T ss_dssp             CCCGGGGTTCSSCCEEECTTSC-CCCBCTTS---STTCTTCSEEECTTSCC-CCB-CTTTTTTCTTCCEEECCS
T ss_pred             ccCHhHhcCCcCCCEEECCCCc-CCeECHhH---cCCCccCCEEECCCCcC-CEE-CHHHhcCCCCCCEEEecC
Confidence            111 123455666666666532 44333222   33456666666665532 222 223355566666666665

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.94  E-value=1.2e-08  Score=84.01  Aligned_cols=110  Identities=13%  Similarity=0.212  Sum_probs=67.7

Q ss_pred             ccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCccccccccccccc
Q 037794          122 IGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEEL  201 (293)
Q Consensus       122 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~  201 (293)
                      ..+++|+.|+++++ .++.+..+.   +..+++|++|+++++.. ..+ +...+.++++|++|++.+ ..++.+.. ..+
T Consensus        54 ~~l~~L~~L~L~~N-~i~~i~~~~---~~~l~~L~~L~Ls~N~l-~~~-~~~~~~~l~~L~~L~Ls~-N~l~~~~~-~~~  125 (220)
T 2v70_A           54 KKLPQLRKINFSNN-KITDIEEGA---FEGASGVNEILLTSNRL-ENV-QHKMFKGLESLKTLMLRS-NRITCVGN-DSF  125 (220)
T ss_dssp             GGCTTCCEEECCSS-CCCEECTTT---TTTCTTCCEEECCSSCC-CCC-CGGGGTTCSSCCEEECTT-SCCCCBCT-TSS
T ss_pred             ccCCCCCEEECCCC-cCCEECHHH---hCCCCCCCEEECCCCcc-Ccc-CHhHhcCCcCCCEEECCC-CcCCeECH-hHc
Confidence            45566666666663 355555433   45667788888877654 332 555577778888888877 34544421 111


Q ss_pred             ccccccCCCCCCcccEEecCCCCCCceeccCCCccccCCCcceEeeecC
Q 037794          202 NADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENC  250 (293)
Q Consensus       202 ~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C  250 (293)
                      .        .+++|++|++.+. .++.+..  ..+..+++|++|+++++
T Consensus       126 ~--------~l~~L~~L~L~~N-~l~~~~~--~~~~~l~~L~~L~L~~N  163 (220)
T 2v70_A          126 I--------GLSSVRLLSLYDN-QITTVAP--GAFDTLHSLSTLNLLAN  163 (220)
T ss_dssp             T--------TCTTCSEEECTTS-CCCCBCT--TTTTTCTTCCEEECCSC
T ss_pred             C--------CCccCCEEECCCC-cCCEECH--HHhcCCCCCCEEEecCc
Confidence            1        1377888888773 5666533  55667778888887765

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.94  E-value=3.5e-09  Score=86.21  Aligned_cols=131  Identities=16%  Similarity=0.252  Sum_probs=93.2

Q ss_pred             ccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccC-ccCCCCeeEEEeccccccccccccCccchhhh
Q 037794           36 FNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQG-IVSTPKLHEVQVSKKEEDELHHWEGNKLNSTI  114 (293)
Q Consensus        36 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~-~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~  114 (293)
                      .++|++|+++++. +..++.. ....+++|++|+++++ .++.+|.. +..+++|+.|+++++               .+
T Consensus        27 ~~~l~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n---------------~l   88 (208)
T 2o6s_A           27 PAQTTYLDLETNS-LKSLPNG-VFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTN---------------QL   88 (208)
T ss_dssp             CTTCSEEECCSSC-CCCCCTT-TTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS---------------CC
T ss_pred             CCCCcEEEcCCCc-cCcCChh-hhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCC---------------cC
Confidence            5689999998873 4445432 2347899999999986 56666544 477899999999876               11


Q ss_pred             hhhhh-hhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcc
Q 037794          115 QKRYE-EMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCD  190 (293)
Q Consensus       115 ~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~  190 (293)
                      ..++. .+..+++|+.|+++++ .++.++...   +..+++|++|+++++. +..+ +...+..+++|+.|++.+++
T Consensus        89 ~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~---~~~l~~L~~L~l~~N~-l~~~-~~~~~~~l~~L~~L~l~~N~  159 (208)
T 2o6s_A           89 QSLPNGVFDKLTQLKELALNTN-QLQSLPDGV---FDKLTQLKDLRLYQNQ-LKSV-PDGVFDRLTSLQYIWLHDNP  159 (208)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSS-CCCCCCTTT---TTTCTTCCEEECCSSC-CSCC-CTTTTTTCTTCCEEECCSCC
T ss_pred             CccCHhHhcCccCCCEEEcCCC-cCcccCHhH---hccCCcCCEEECCCCc-ccee-CHHHhccCCCccEEEecCCC
Confidence            12222 2367889999999885 466554333   4577999999999885 4443 65667889999999999864

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.92  E-value=1e-09  Score=100.08  Aligned_cols=233  Identities=15%  Similarity=0.114  Sum_probs=105.4

Q ss_pred             CCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCC----CcceEeEcCCCCcc--
Q 037794            4 PNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFP----SLERVFVTRCPNMK--   77 (293)
Q Consensus         4 l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~----~L~~L~i~~c~~l~--   77 (293)
                      +++|++|++++|. +.......   .+.....+++|++|+++++. +.+.........++    +|++|++++|. ++  
T Consensus        27 ~~~L~~L~L~~~~-l~~~~~~~---l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~  100 (461)
T 1z7x_W           27 LQQCQVVRLDDCG-LTEARCKD---ISSALRVNPALAELNLRSNE-LGDVGVHCVLQGLQTPSCKIQKLSLQNCC-LTGA  100 (461)
T ss_dssp             HTTCSEEEEESSC-CCHHHHHH---HHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHTTCSTTCCCCEEECTTSC-CBGG
T ss_pred             cCCccEEEccCCC-CCHHHHHH---HHHHHHhCCCcCEEeCCCCc-CChHHHHHHHHHHhhCCCceeEEEccCCC-CCHH
Confidence            4567777777663 32111000   00112235777777777653 22211111112233    67888887774 33  


Q ss_pred             ---ccccCccCCCCeeEEEecccccccc------------------ccccCccch-hhhhhhhhhhccCCCccEEEecCC
Q 037794           78 ---TFSQGIVSTPKLHEVQVSKKEEDEL------------------HHWEGNKLN-STIQKRYEEMIGFRDIERLQLSHF  135 (293)
Q Consensus        78 ---~lp~~~~~~~~L~~L~l~~c~~~~~------------------~~~~~~~~~-~~~~~l~~~~~~~~~L~~L~l~~~  135 (293)
                         .++..+..+++|+.|+++++.-...                  ..+.+..+. .....+...+..+++|++|+++++
T Consensus       101 ~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n  180 (461)
T 1z7x_W          101 GCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN  180 (461)
T ss_dssp             GHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSS
T ss_pred             HHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCC
Confidence               3455666777788887776621000                  000000000 011123333445567777777664


Q ss_pred             CCceEeccCCCCC---cccCCCccEEEeccCCCCCccC--ChhHHhccCCCCeEEecCcccccccccccccccccccCCC
Q 037794          136 PRLKEIWHGQALP---VSFFNNLFKLVVDDCANMSSAI--PANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGP  210 (293)
Q Consensus       136 ~~l~~~~~~~~~~---~~~l~~L~~L~i~~c~~l~~~~--p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~  210 (293)
                      . +....... +.   ....++|++|++++|..-...+  ....+..+++|++|++.+| .+..... ..+..  . ...
T Consensus       181 ~-i~~~~~~~-l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~-~~l~~--~-~~~  253 (461)
T 1z7x_W          181 D-INEAGVRV-LCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN-KLGDVGM-AELCP--G-LLH  253 (461)
T ss_dssp             B-CHHHHHHH-HHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSS-BCHHHHH-HHHHH--H-HTS
T ss_pred             C-cchHHHHH-HHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCC-cCChHHH-HHHHH--H-Hhc
Confidence            4 33221111 00   0123577778877775332100  0223556778888888775 3333210 00000  0 000


Q ss_pred             CCCcccEEecCCCCCCceecc--CCCccccCCCcceEeeecC
Q 037794          211 LFPRLFILRLIDLPKLKRFCN--FTGNIIEMPMLWSLTIENC  250 (293)
Q Consensus       211 ~f~~L~~L~l~~~~~l~~~~~--~~~~~~~l~~L~~L~i~~C  250 (293)
                      .+++|++|++.+| .++....  .+..+..+++|++|+++++
T Consensus       254 ~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n  294 (461)
T 1z7x_W          254 PSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGN  294 (461)
T ss_dssp             TTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTC
T ss_pred             CCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCC
Confidence            1266777777765 4443100  0023344566666666655

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.91  E-value=1.3e-09  Score=85.72  Aligned_cols=136  Identities=18%  Similarity=0.181  Sum_probs=90.9

Q ss_pred             ccccceeeccccccc-cccccccccccCCCcceEeEcCCCCccccccCccCCCCeeEEEeccccccccccccCccchhhh
Q 037794           36 FNELKFLELDDLPRL-TSFCLENYTLEFPSLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTI  114 (293)
Q Consensus        36 ~~~L~~L~l~~~~~l-~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~  114 (293)
                      .++|+.|+++++..- ..++..  ...+++|+.|++++|. ++.+ ..+..+++|+.|+++++              ...
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~--~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N--------------~l~   84 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGL--TAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSEN--------------RIF   84 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSC--CGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESC--------------CCC
T ss_pred             cccCCEEECCCCCCChhhHHHH--HHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCC--------------cCc
Confidence            567888888877522 144432  4577888888888874 6655 56677888888888876              111


Q ss_pred             hhhhhhhccCCCccEEEecCCCCceEecc-CCCCCcccCCCccEEEeccCCCCCccCCh---hHHhccCCCCeEEecCcc
Q 037794          115 QKRYEEMIGFRDIERLQLSHFPRLKEIWH-GQALPVSFFNNLFKLVVDDCANMSSAIPA---NLLRCLSNLRWLEVRNCD  190 (293)
Q Consensus       115 ~~l~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~~l~~L~~L~i~~c~~l~~~~p~---~~~~~l~~L~~L~i~~c~  190 (293)
                      ..++.....+++|+.|+++++. ++.++. ..   +..+++|++|+++++... .. +.   ..+..+++|+.|++.+|.
T Consensus        85 ~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~---l~~l~~L~~L~l~~N~l~-~~-~~~~~~~~~~l~~L~~L~l~~n~  158 (168)
T 2ell_A           85 GGLDMLAEKLPNLTHLNLSGNK-LKDISTLEP---LKKLECLKSLDLFNCEVT-NL-NDYRESVFKLLPQLTYLDGYDRE  158 (168)
T ss_dssp             SCCCHHHHHCTTCCEEECBSSS-CCSSGGGGG---GSSCSCCCEEECCSSGGG-TS-TTHHHHHHTTCSSCCEETTEETT
T ss_pred             hHHHHHHhhCCCCCEEeccCCc-cCcchhHHH---HhcCCCCCEEEeeCCcCc-ch-HHHHHHHHHhCccCcEecCCCCC
Confidence            1123333458889999998863 555432 22   457789999999988644 32 44   468889999999999864


Q ss_pred             cccccc
Q 037794          191 SLEEVL  196 (293)
Q Consensus       191 ~l~~i~  196 (293)
                       +..++
T Consensus       159 -~~~~~  163 (168)
T 2ell_A          159 -DQEAP  163 (168)
T ss_dssp             -SCBCC
T ss_pred             -hhhcc
Confidence             44444

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.90  E-value=1.4e-10  Score=105.70  Aligned_cols=235  Identities=15%  Similarity=0.095  Sum_probs=115.1

Q ss_pred             CCCcceEeccccccceEeccccccccccccccccccceeecccccccccccccccc----ccCCCcceEeEcCCCCccc-
Q 037794            4 PNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYT----LEFPSLERVFVTRCPNMKT-   78 (293)
Q Consensus         4 l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~----~~~~~L~~L~i~~c~~l~~-   78 (293)
                      .++|++|++++| .++.......   ......+++|++|+++++. +.........    ...++|++|++++|. ++. 
T Consensus       141 ~~~L~~L~L~~n-~l~~~~~~~l---~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~  214 (461)
T 1z7x_W          141 QCRLEKLQLEYC-SLSAASCEPL---ASVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCG-VTSD  214 (461)
T ss_dssp             TCCCCEEECTTS-CCBGGGHHHH---HHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSC-CBTT
T ss_pred             CCcceEEECCCC-CCCHHHHHHH---HHHHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCC-CcHH
Confidence            457889999887 3332111000   0012225777777777764 2222111100    124567777776663 332 


Q ss_pred             ----cccCccCCCCeeEEEecccccccc------------------ccccCccch-hhhhhhhhhhccCCCccEEEecCC
Q 037794           79 ----FSQGIVSTPKLHEVQVSKKEEDEL------------------HHWEGNKLN-STIQKRYEEMIGFRDIERLQLSHF  135 (293)
Q Consensus        79 ----lp~~~~~~~~L~~L~l~~c~~~~~------------------~~~~~~~~~-~~~~~l~~~~~~~~~L~~L~l~~~  135 (293)
                          ++..+..+++|+.|++++|.-...                  ..+.+..+. .....++..+..+++|+.|+++++
T Consensus       215 ~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n  294 (461)
T 1z7x_W          215 NCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN  294 (461)
T ss_dssp             HHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTC
T ss_pred             HHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCC
Confidence                344445566666666665510000                  000000000 111123444455677777777765


Q ss_pred             CCceEeccCCCCC---cccCCCccEEEeccCCCCCccC--ChhHHhccCCCCeEEecCcccccccccccccccccccCCC
Q 037794          136 PRLKEIWHGQALP---VSFFNNLFKLVVDDCANMSSAI--PANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGP  210 (293)
Q Consensus       136 ~~l~~~~~~~~~~---~~~l~~L~~L~i~~c~~l~~~~--p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~  210 (293)
                      . ++...... +.   ....++|++|++++|.......  ....+..+++|++|+++++ .+.+... ..+..  ... .
T Consensus       295 ~-i~~~~~~~-l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~-~~l~~--~l~-~  367 (461)
T 1z7x_W          295 E-LGDEGARL-LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGV-RELCQ--GLG-Q  367 (461)
T ss_dssp             C-CHHHHHHH-HHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHH-HHHHH--HHT-S
T ss_pred             C-CchHHHHH-HHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCC-ccccccH-HHHHH--HHc-C
Confidence            3 33221111 00   1122578888888776333210  1123556788888888875 3443211 10000  000 0


Q ss_pred             CCCcccEEecCCCCCCc-----eeccCCCccccCCCcceEeeecCCCcccc
Q 037794          211 LFPRLFILRLIDLPKLK-----RFCNFTGNIIEMPMLWSLTIENCPDMETF  256 (293)
Q Consensus       211 ~f~~L~~L~l~~~~~l~-----~~~~~~~~~~~l~~L~~L~i~~C~~L~~l  256 (293)
                      ..++|++|++.+| .++     .++   ..+..+++|++|++++| +++..
T Consensus       368 ~~~~L~~L~L~~n-~i~~~~~~~l~---~~l~~~~~L~~L~l~~N-~i~~~  413 (461)
T 1z7x_W          368 PGSVLRVLWLADC-DVSDSSCSSLA---ATLLANHSLRELDLSNN-CLGDA  413 (461)
T ss_dssp             TTCCCCEEECTTS-CCCHHHHHHHH---HHHHHCCCCCEEECCSS-SCCHH
T ss_pred             CCCceEEEECCCC-CCChhhHHHHH---HHHHhCCCccEEECCCC-CCCHH
Confidence            1368899999887 455     232   45567888999999887 46543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.90  E-value=6.5e-09  Score=87.99  Aligned_cols=143  Identities=17%  Similarity=0.248  Sum_probs=81.4

Q ss_pred             ccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccCccCCCCeeEEEeccccccccccccCccchhhhh
Q 037794           36 FNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQ  115 (293)
Q Consensus        36 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~  115 (293)
                      +++|++|+++++ .+..++   ....+++|+.|+++++ .++.++. +..+++|+.|+++++               .+.
T Consensus        40 l~~L~~L~l~~n-~i~~l~---~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~~N---------------~l~   98 (263)
T 1xeu_A           40 LSGVQNFNGDNS-NIQSLA---GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSVNRN---------------RLK   98 (263)
T ss_dssp             HTTCSEEECTTS-CCCCCT---TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECCSS---------------CCS
T ss_pred             cCcCcEEECcCC-Ccccch---HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEECCCC---------------ccC
Confidence            677777777766 344444   1446777777777765 4555544 666777777777765               111


Q ss_pred             hhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCccccccc
Q 037794          116 KRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEV  195 (293)
Q Consensus       116 ~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i  195 (293)
                      .++. ... ++|+.|+++++. ++.++  .   +..+++|++|+++++. ++++ +  .+..+++|+.|+++++ .++.+
T Consensus        99 ~l~~-~~~-~~L~~L~L~~N~-l~~~~--~---l~~l~~L~~L~Ls~N~-i~~~-~--~l~~l~~L~~L~L~~N-~i~~~  165 (263)
T 1xeu_A           99 NLNG-IPS-ACLSRLFLDNNE-LRDTD--S---LIHLKNLEILSIRNNK-LKSI-V--MLGFLSKLEVLDLHGN-EITNT  165 (263)
T ss_dssp             CCTT-CCC-SSCCEEECCSSC-CSBSG--G---GTTCTTCCEEECTTSC-CCBC-G--GGGGCTTCCEEECTTS-CCCBC
T ss_pred             CcCc-ccc-CcccEEEccCCc-cCCCh--h---hcCcccccEEECCCCc-CCCC-h--HHccCCCCCEEECCCC-cCcch
Confidence            1111 112 677777777653 44332  1   4456777777777665 3332 3  3566777777777773 34433


Q ss_pred             ccccccccccccCCCCCCcccEEecCCC
Q 037794          196 LHLEELNADKEHIGPLFPRLFILRLIDL  223 (293)
Q Consensus       196 ~~~~~~~~~~~~~~~~f~~L~~L~l~~~  223 (293)
                         ..+.        .+++|+.|++.+.
T Consensus       166 ---~~l~--------~l~~L~~L~l~~N  182 (263)
T 1xeu_A          166 ---GGLT--------RLKKVNWIDLTGQ  182 (263)
T ss_dssp             ---TTST--------TCCCCCEEEEEEE
T ss_pred             ---HHhc--------cCCCCCEEeCCCC
Confidence               1111        2367777777664

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.88  E-value=1.2e-08  Score=90.34  Aligned_cols=137  Identities=18%  Similarity=0.242  Sum_probs=72.1

Q ss_pred             ccccceeeccccccccccccccccccCCCcceEeEcCCCCccccc-cCccCCCCeeEEEeccccccccccccCccchhhh
Q 037794           36 FNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFS-QGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTI  114 (293)
Q Consensus        36 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp-~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~  114 (293)
                      .+.++.|+++++ .+..++.......+++|+.|+++++ .++.++ ..+..+++|+.|+++++               .+
T Consensus        38 ~~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N---------------~l  100 (361)
T 2xot_A           38 PSYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSN---------------HL  100 (361)
T ss_dssp             CTTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS---------------CC
T ss_pred             CCCCCEEECCCC-CCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCC---------------cC
Confidence            344666777665 3444443321115667777777664 455444 33566677777777654               11


Q ss_pred             hhhhh-hhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHH---hccCCCCeEEecCcc
Q 037794          115 QKRYE-EMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLL---RCLSNLRWLEVRNCD  190 (293)
Q Consensus       115 ~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~---~~l~~L~~L~i~~c~  190 (293)
                      ..+.. .+..+++|+.|+++++. +..+..+.   +..+++|++|+++++.. .. +|...+   ..+++|+.|++++ +
T Consensus       101 ~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~---~~~l~~L~~L~L~~N~l-~~-l~~~~~~~~~~l~~L~~L~L~~-N  173 (361)
T 2xot_A          101 HTLDEFLFSDLQALEVLLLYNNH-IVVVDRNA---FEDMAQLQKLYLSQNQI-SR-FPVELIKDGNKLPKLMLLDLSS-N  173 (361)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSC-CCEECTTT---TTTCTTCCEEECCSSCC-CS-CCGGGTC----CTTCCEEECCS-S
T ss_pred             CcCCHHHhCCCcCCCEEECCCCc-ccEECHHH---hCCcccCCEEECCCCcC-Ce-eCHHHhcCcccCCcCCEEECCC-C
Confidence            11111 23456677777776643 45444333   44566777777766643 33 254434   4466777777766 3


Q ss_pred             cccccc
Q 037794          191 SLEEVL  196 (293)
Q Consensus       191 ~l~~i~  196 (293)
                      .++.++
T Consensus       174 ~l~~l~  179 (361)
T 2xot_A          174 KLKKLP  179 (361)
T ss_dssp             CCCCCC
T ss_pred             CCCccC
Confidence            444443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.88  E-value=8.7e-10  Score=97.72  Aligned_cols=221  Identities=12%  Similarity=-0.009  Sum_probs=123.4

Q ss_pred             CCCCcceEeccccccceEecccccccccccccccc-ccceeecccccccccccccc---cccc-CCCcceEeEcCCCCcc
Q 037794            3 IPNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFN-ELKFLELDDLPRLTSFCLEN---YTLE-FPSLERVFVTRCPNMK   77 (293)
Q Consensus         3 ~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~-~L~~L~l~~~~~l~~~~~~~---~~~~-~~~L~~L~i~~c~~l~   77 (293)
                      ..++|++|++++|. ++..+.....   .....++ +|++|+++++. +.......   .... +++|++|++++|. ++
T Consensus        20 ~~~~L~~L~Ls~n~-l~~~~~~~l~---~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~   93 (362)
T 3goz_A           20 IPHGVTSLDLSLNN-LYSISTVELI---QAFANTPASVTSLNLSGNS-LGFKNSDELVQILAAIPANVTSLNLSGNF-LS   93 (362)
T ss_dssp             SCTTCCEEECTTSC-GGGSCHHHHH---HHHHTCCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSC-GG
T ss_pred             CCCCceEEEccCCC-CChHHHHHHH---HHHHhCCCceeEEECcCCC-CCHHHHHHHHHHHhccCCCccEEECcCCc-CC
Confidence            35669999999984 5554431100   0122366 89999999874 34332211   1112 3899999999985 44


Q ss_pred             ccc-c----CccCC-CCeeEEEeccccccccccccCccchhhhhhhhhhhcc-CCCccEEEecCCCCceEeccCCCCC--
Q 037794           78 TFS-Q----GIVST-PKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIG-FRDIERLQLSHFPRLKEIWHGQALP--  148 (293)
Q Consensus        78 ~lp-~----~~~~~-~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~L~~L~l~~~~~l~~~~~~~~~~--  148 (293)
                      ..+ .    .+..+ ++|+.|++++|. .     .+.    ....+...+.. .++|++|+++++. ++...... ++  
T Consensus        94 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l-----~~~----~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~-l~~~  161 (362)
T 3goz_A           94 YKSSDELVKTLAAIPFTITVLDLGWND-F-----SSK----SSSEFKQAFSNLPASITSLNLRGND-LGIKSSDE-LIQI  161 (362)
T ss_dssp             GSCHHHHHHHHHTSCTTCCEEECCSSC-G-----GGS----CHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHH-HHHH
T ss_pred             hHHHHHHHHHHHhCCCCccEEECcCCc-C-----CcH----HHHHHHHHHHhCCCceeEEEccCCc-CCHHHHHH-HHHH
Confidence            221 2    23344 799999999871 0     000    01122222344 3689999999864 44222111 10  


Q ss_pred             cccC-CCccEEEeccCCCCCccCChh---HHhcc-CCCCeEEecCccccccccc--c-cccccccccCCCCCCcccEEec
Q 037794          149 VSFF-NNLFKLVVDDCANMSSAIPAN---LLRCL-SNLRWLEVRNCDSLEEVLH--L-EELNADKEHIGPLFPRLFILRL  220 (293)
Q Consensus       149 ~~~l-~~L~~L~i~~c~~l~~~~p~~---~~~~l-~~L~~L~i~~c~~l~~i~~--~-~~~~~~~~~~~~~f~~L~~L~l  220 (293)
                      +..+ ++|++|++++|.. .+..+..   .+..+ ++|++|++++|. +.....  . .....       ..++|++|++
T Consensus       162 l~~~~~~L~~L~Ls~n~l-~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~-------~~~~L~~L~L  232 (362)
T 3goz_A          162 LAAIPANVNSLNLRGNNL-ASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFSS-------IPNHVVSLNL  232 (362)
T ss_dssp             HHTSCTTCCEEECTTSCG-GGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHH-------SCTTCCEEEC
T ss_pred             HhcCCccccEeeecCCCC-chhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHhc-------CCCCceEEEC
Confidence            1223 4899999998853 3322322   33445 599999999854 444110  0 11111       2258999999


Q ss_pred             CCCCCCceeccC--CCccccCCCcceEeeecCC
Q 037794          221 IDLPKLKRFCNF--TGNIIEMPMLWSLTIENCP  251 (293)
Q Consensus       221 ~~~~~l~~~~~~--~~~~~~l~~L~~L~i~~C~  251 (293)
                      +++ .+++....  ...+..+++|++|++++|.
T Consensus       233 s~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~  264 (362)
T 3goz_A          233 CLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDI  264 (362)
T ss_dssp             CSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred             cCC-CCCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence            885 45543210  0123567889999999884

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.87  E-value=1.4e-08  Score=83.60  Aligned_cols=129  Identities=10%  Similarity=0.111  Sum_probs=79.7

Q ss_pred             ccccceeeccccccccccccccccccCCCcceEeEcCCCCcccc-ccCccCCCCeeEEEeccccccccccccCccchhhh
Q 037794           36 FNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTF-SQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTI  114 (293)
Q Consensus        36 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l-p~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~  114 (293)
                      .++|+.|+++++. +..++.. ....+++|+.|+++++ .+..+ |..+..+++|+.|+++++               .+
T Consensus        31 ~~~l~~L~l~~n~-i~~i~~~-~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N---------------~l   92 (220)
T 2v9t_B           31 PETITEIRLEQNT-IKVIPPG-AFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGN---------------KI   92 (220)
T ss_dssp             CTTCCEEECCSSC-CCEECTT-SSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSS---------------CC
T ss_pred             CcCCCEEECCCCc-CCCcCHh-HhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCC---------------cC
Confidence            4689999998863 4555542 2457899999999986 45544 667788888999988865               11


Q ss_pred             hhhhhh-hccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecC
Q 037794          115 QKRYEE-MIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRN  188 (293)
Q Consensus       115 ~~l~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~  188 (293)
                      ..++.. +..+++|+.|+++++ .++.+....   +..+++|++|+++++... .+ +...+..+++|++|++.+
T Consensus        93 ~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~---~~~l~~L~~L~L~~N~l~-~~-~~~~~~~l~~L~~L~L~~  161 (220)
T 2v9t_B           93 TELPKSLFEGLFSLQLLLLNAN-KINCLRVDA---FQDLHNLNLLSLYDNKLQ-TI-AKGTFSPLRAIQTMHLAQ  161 (220)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSS-CCCCCCTTT---TTTCTTCCEEECCSSCCS-CC-CTTTTTTCTTCCEEECCS
T ss_pred             CccCHhHccCCCCCCEEECCCC-CCCEeCHHH---cCCCCCCCEEECCCCcCC-EE-CHHHHhCCCCCCEEEeCC
Confidence            122222 245667777777664 344443332   445566777777666433 22 434455566666666665

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.81  E-value=9.1e-09  Score=79.09  Aligned_cols=58  Identities=21%  Similarity=0.192  Sum_probs=31.3

Q ss_pred             ccccceeeccccccc-cccccccccccCCCcceEeEcCCCCccccccCccCCCCeeEEEeccc
Q 037794           36 FNELKFLELDDLPRL-TSFCLENYTLEFPSLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKK   97 (293)
Q Consensus        36 ~~~L~~L~l~~~~~l-~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~L~~L~l~~c   97 (293)
                      .++|+.|+++++..- ..++..  ...+++|+.|++++| .++.+ ..+..+++|+.|+++++
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~--~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n   74 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGL--TDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDN   74 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSC--CTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSS
T ss_pred             CccCeEEEccCCcCChhHHHHH--HhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCC
Confidence            456666666665322 133321  345666666666665 34444 44455666666666654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.81  E-value=1.7e-08  Score=89.38  Aligned_cols=174  Identities=17%  Similarity=0.178  Sum_probs=115.8

Q ss_pred             ceeeccccccccccccccccccCCCcceEeEcCCCCccccccC-cc-CCCCeeEEEeccccccccccccCccchhhhhhh
Q 037794           40 KFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQG-IV-STPKLHEVQVSKKEEDELHHWEGNKLNSTIQKR  117 (293)
Q Consensus        40 ~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~-~~-~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l  117 (293)
                      +.+++.+. .++.+|..    -.++++.|+++++ .++.++.. +. .+++|+.|.++++               .+..+
T Consensus        21 ~~l~c~~~-~l~~iP~~----~~~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N---------------~i~~i   79 (361)
T 2xot_A           21 NILSCSKQ-QLPNVPQS----LPSYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHN---------------HLNFI   79 (361)
T ss_dssp             TEEECCSS-CCSSCCSS----CCTTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSS---------------CCCEE
T ss_pred             CEEEeCCC-CcCccCcc----CCCCCCEEECCCC-CCCccChhhhhhcccccCEEECCCC---------------cCCcc
Confidence            44555443 45566653    2456899999986 57766544 34 7899999999875               12222


Q ss_pred             h-hhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccc
Q 037794          118 Y-EEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVL  196 (293)
Q Consensus       118 ~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~  196 (293)
                      . ..+..+++|+.|+++++ .++.++...   +..+++|++|+++++... .+ +...+.++++|+.|++.+ +.++.++
T Consensus        80 ~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~---~~~l~~L~~L~L~~N~i~-~~-~~~~~~~l~~L~~L~L~~-N~l~~l~  152 (361)
T 2xot_A           80 SSEAFVPVPNLRYLDLSSN-HLHTLDEFL---FSDLQALEVLLLYNNHIV-VV-DRNAFEDMAQLQKLYLSQ-NQISRFP  152 (361)
T ss_dssp             CTTTTTTCTTCCEEECCSS-CCCEECTTT---TTTCTTCCEEECCSSCCC-EE-CTTTTTTCTTCCEEECCS-SCCCSCC
T ss_pred             ChhhccCCCCCCEEECCCC-cCCcCCHHH---hCCCcCCCEEECCCCccc-EE-CHHHhCCcccCCEEECCC-CcCCeeC
Confidence            2 23467889999999985 477776544   567899999999988643 33 444588899999999998 4566665


Q ss_pred             cccccccccccCCCCCCcccEEecCCCCCCceeccCCCccccCCC--cceEeeecC
Q 037794          197 HLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPM--LWSLTIENC  250 (293)
Q Consensus       197 ~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~--L~~L~i~~C  250 (293)
                      . ..+..     ...+++|+.|++++. .++.++.  ..+..++.  ++.|++.++
T Consensus       153 ~-~~~~~-----~~~l~~L~~L~L~~N-~l~~l~~--~~~~~l~~~~l~~l~l~~N  199 (361)
T 2xot_A          153 V-ELIKD-----GNKLPKLMLLDLSSN-KLKKLPL--TDLQKLPAWVKNGLYLHNN  199 (361)
T ss_dssp             G-GGTC---------CTTCCEEECCSS-CCCCCCH--HHHHHSCHHHHTTEECCSS
T ss_pred             H-HHhcC-----cccCCcCCEEECCCC-CCCccCH--HHhhhccHhhcceEEecCC
Confidence            2 11100     012489999999884 6776643  45566676  478888774

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.80  E-value=2.6e-09  Score=82.23  Aligned_cols=82  Identities=18%  Similarity=0.256  Sum_probs=58.9

Q ss_pred             CCCCcceEeccccccce--EeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccc
Q 037794            3 IPNSLVNLNVSYCEKIE--EIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFS   80 (293)
Q Consensus         3 ~l~~L~~L~l~~c~~l~--~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp   80 (293)
                      .+++|++|++++|. +.  .++....        .+++|+.|+++++ .+..+   .....+++|+.|+++++.--..+|
T Consensus        15 ~~~~l~~L~l~~n~-l~~~~~~~~~~--------~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~Ls~n~i~~~~~   81 (149)
T 2je0_A           15 TPSDVKELVLDNSR-SNEGKLEGLTD--------EFEELEFLSTINV-GLTSI---ANLPKLNKLKKLELSDNRVSGGLE   81 (149)
T ss_dssp             CGGGCSEEECTTCB-CBTTBCCSCCT--------TCTTCCEEECTTS-CCCCC---TTCCCCTTCCEEECCSSCCCSCTH
T ss_pred             CCccCeEEEccCCc-CChhHHHHHHh--------hcCCCcEEECcCC-CCCCc---hhhhcCCCCCEEECCCCcccchHH
Confidence            45789999999984 44  5665333        3899999999987 45555   235689999999999975333366


Q ss_pred             cCccCCCCeeEEEeccc
Q 037794           81 QGIVSTPKLHEVQVSKK   97 (293)
Q Consensus        81 ~~~~~~~~L~~L~l~~c   97 (293)
                      .....+++|+.|+++++
T Consensus        82 ~~~~~l~~L~~L~ls~N   98 (149)
T 2je0_A           82 VLAEKCPNLTHLNLSGN   98 (149)
T ss_dssp             HHHHHCTTCCEEECTTS
T ss_pred             HHhhhCCCCCEEECCCC
Confidence            55556777777777765

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.79  E-value=3.5e-08  Score=81.65  Aligned_cols=129  Identities=12%  Similarity=0.128  Sum_probs=75.8

Q ss_pred             CCCcceEeEcCCCCcccc-ccCccCCCCeeEEEeccccccccccccCccchhhhhhhhh-hhccCCCccEEEecCCCCce
Q 037794           62 FPSLERVFVTRCPNMKTF-SQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYE-EMIGFRDIERLQLSHFPRLK  139 (293)
Q Consensus        62 ~~~L~~L~i~~c~~l~~l-p~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~  139 (293)
                      .++|+.|+++++. +..+ |..+..+++|+.|+++++               .+..++. .+..+++|+.|+++++ .++
T Consensus        39 ~~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~N---------------~l~~i~~~~~~~l~~L~~L~Ls~N-~l~  101 (229)
T 3e6j_A           39 PTNAQILYLHDNQ-ITKLEPGVFDSLINLKELYLGSN---------------QLGALPVGVFDSLTQLTVLDLGTN-QLT  101 (229)
T ss_dssp             CTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS---------------CCCCCCTTTTTTCTTCCEEECCSS-CCC
T ss_pred             CCCCCEEEcCCCc-cCccCHHHhhCccCCcEEECCCC---------------CCCCcChhhcccCCCcCEEECCCC-cCC
Confidence            3677777777753 3333 455566777777777754               1122221 1255677777777774 455


Q ss_pred             EeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEe
Q 037794          140 EIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILR  219 (293)
Q Consensus       140 ~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~  219 (293)
                      .++...   +..+++|++|+++++... . +|.. +..+++|+.|++.+ +.++.++. ..+.        .+++|++|+
T Consensus       102 ~l~~~~---~~~l~~L~~L~Ls~N~l~-~-lp~~-~~~l~~L~~L~L~~-N~l~~~~~-~~~~--------~l~~L~~L~  165 (229)
T 3e6j_A          102 VLPSAV---FDRLVHLKELFMCCNKLT-E-LPRG-IERLTHLTHLALDQ-NQLKSIPH-GAFD--------RLSSLTHAY  165 (229)
T ss_dssp             CCCTTT---TTTCTTCCEEECCSSCCC-S-CCTT-GGGCTTCSEEECCS-SCCCCCCT-TTTT--------TCTTCCEEE
T ss_pred             ccChhH---hCcchhhCeEeccCCccc-c-cCcc-cccCCCCCEEECCC-CcCCccCH-HHHh--------CCCCCCEEE
Confidence            544332   446677888888776533 3 3554 56678888888877 45555542 1111        237777887


Q ss_pred             cCCC
Q 037794          220 LIDL  223 (293)
Q Consensus       220 l~~~  223 (293)
                      +.+.
T Consensus       166 l~~N  169 (229)
T 3e6j_A          166 LFGN  169 (229)
T ss_dssp             CTTS
T ss_pred             eeCC
Confidence            7764

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.78  E-value=1.2e-09  Score=96.75  Aligned_cols=223  Identities=9%  Similarity=-0.007  Sum_probs=128.5

Q ss_pred             CCC-CcceEeccccccceEeccc-ccccccccccc-ccccceeeccccccccccccc---cccccC-CCcceEeEcCCCC
Q 037794            3 IPN-SLVNLNVSYCEKIEEIIGH-VGEEAKENRIA-FNELKFLELDDLPRLTSFCLE---NYTLEF-PSLERVFVTRCPN   75 (293)
Q Consensus         3 ~l~-~L~~L~l~~c~~l~~i~~~-~~~~~~~~~~~-~~~L~~L~l~~~~~l~~~~~~---~~~~~~-~~L~~L~i~~c~~   75 (293)
                      .++ +|++|++++| .+...... ...    .... +++|++|+++++. +......   .....+ ++|++|++++|. 
T Consensus        48 ~~~~~L~~L~Ls~N-~l~~~~~~~l~~----~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-  120 (362)
T 3goz_A           48 NTPASVTSLNLSGN-SLGFKNSDELVQ----ILAAIPANVTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWND-  120 (362)
T ss_dssp             TCCTTCCEEECCSS-CGGGSCHHHHHH----HHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSC-
T ss_pred             hCCCceeEEECcCC-CCCHHHHHHHHH----HHhccCCCccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCc-
Confidence            456 8999999998 44443321 111    0011 3899999999986 3333221   112244 799999999985 


Q ss_pred             cccccc-----CccC-CCCeeEEEeccccccccccccCccchhhhhhhhhhhccCC-CccEEEecCCCCceEeccCCCCC
Q 037794           76 MKTFSQ-----GIVS-TPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFR-DIERLQLSHFPRLKEIWHGQALP  148 (293)
Q Consensus        76 l~~lp~-----~~~~-~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~L~~L~l~~~~~l~~~~~~~~~~  148 (293)
                      ++..+.     .+.. .++|+.|++++|. .     .+    .....+...+..++ +|++|+++++. ++...... +.
T Consensus       121 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l-----~~----~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~-l~  188 (362)
T 3goz_A          121 FSSKSSSEFKQAFSNLPASITSLNLRGND-L-----GI----KSSDELIQILAAIPANVNSLNLRGNN-LASKNCAE-LA  188 (362)
T ss_dssp             GGGSCHHHHHHHHTTSCTTCCEEECTTSC-G-----GG----SCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHH-HH
T ss_pred             CCcHHHHHHHHHHHhCCCceeEEEccCCc-C-----CH----HHHHHHHHHHhcCCccccEeeecCCC-CchhhHHH-HH
Confidence            553321     2233 4699999999871 0     00    01123444445555 99999999964 44332111 00


Q ss_pred             --cccC-CCccEEEeccCCCCCcc---CChhHHhc-cCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecC
Q 037794          149 --VSFF-NNLFKLVVDDCANMSSA---IPANLLRC-LSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLI  221 (293)
Q Consensus       149 --~~~l-~~L~~L~i~~c~~l~~~---~p~~~~~~-l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~  221 (293)
                        +..+ ++|++|++++|..-...   ++.. +.. .++|++|+++++ .++.... +.+..   . ...+++|++|++.
T Consensus       189 ~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~-l~~~~~~L~~L~Ls~N-~l~~~~~-~~l~~---~-~~~l~~L~~L~L~  261 (362)
T 3goz_A          189 KFLASIPASVTSLDLSANLLGLKSYAELAYI-FSSIPNHVVSLNLCLN-CLHGPSL-ENLKL---L-KDSLKHLQTVYLD  261 (362)
T ss_dssp             HHHHTSCTTCCEEECTTSCGGGSCHHHHHHH-HHHSCTTCCEEECCSS-CCCCCCH-HHHHH---T-TTTTTTCSEEEEE
T ss_pred             HHHHhCCCCCCEEECCCCCCChhHHHHHHHH-HhcCCCCceEEECcCC-CCCcHHH-HHHHH---H-HhcCCCccEEEec
Confidence              1233 59999999988633211   1222 333 469999999995 4544321 00000   0 0123889999998


Q ss_pred             CCC--C-----CceeccCCCccccCCCcceEeeecCCCccc
Q 037794          222 DLP--K-----LKRFCNFTGNIIEMPMLWSLTIENCPDMET  255 (293)
Q Consensus       222 ~~~--~-----l~~~~~~~~~~~~l~~L~~L~i~~C~~L~~  255 (293)
                      ++.  .     +..+.   ..+..+++|+.|+++++ ++..
T Consensus       262 ~n~l~~i~~~~~~~l~---~~~~~l~~L~~LdL~~N-~l~~  298 (362)
T 3goz_A          262 YDIVKNMSKEQCKALG---AAFPNIQKIILVDKNGK-EIHP  298 (362)
T ss_dssp             HHHHTTCCHHHHHHHH---TTSTTCCEEEEECTTSC-BCCG
T ss_pred             cCCccccCHHHHHHHH---HHhccCCceEEEecCCC-cCCC
Confidence            874  1     22222   34557788999999887 3544

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.75  E-value=9.4e-08  Score=89.57  Aligned_cols=165  Identities=15%  Similarity=0.126  Sum_probs=116.9

Q ss_pred             ccceeeccccccccccccccccccCCCcceEeEcCCCCccccccCccCCCCeeEEEeccccccccccccCccchhhhhhh
Q 037794           38 ELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKR  117 (293)
Q Consensus        38 ~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l  117 (293)
                      +|+.|+++++. +..++..    -+++|+.|+++++ .++.+|   ..+++|+.|+++++               .+..+
T Consensus        60 ~L~~L~Ls~n~-L~~lp~~----l~~~L~~L~Ls~N-~l~~ip---~~l~~L~~L~Ls~N---------------~l~~i  115 (571)
T 3cvr_A           60 QFSELQLNRLN-LSSLPDN----LPPQITVLEITQN-ALISLP---ELPASLEYLDACDN---------------RLSTL  115 (571)
T ss_dssp             TCSEEECCSSC-CSCCCSC----CCTTCSEEECCSS-CCSCCC---CCCTTCCEEECCSS---------------CCSCC
T ss_pred             CccEEEeCCCC-CCccCHh----HcCCCCEEECcCC-CCcccc---cccCCCCEEEccCC---------------CCCCc
Confidence            88999998874 5666654    2588999999986 577787   45799999999876               11223


Q ss_pred             hhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCccccccccc
Q 037794          118 YEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLH  197 (293)
Q Consensus       118 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~  197 (293)
                      +. +..  +|+.|+++++. ++.++      . .+++|+.|+++++.. +. +|.    .+++|+.|++.++ .++.++.
T Consensus       116 p~-l~~--~L~~L~Ls~N~-l~~lp------~-~l~~L~~L~Ls~N~l-~~-lp~----~l~~L~~L~Ls~N-~L~~lp~  177 (571)
T 3cvr_A          116 PE-LPA--SLKHLDVDNNQ-LTMLP------E-LPALLEYINADNNQL-TM-LPE----LPTSLEVLSVRNN-QLTFLPE  177 (571)
T ss_dssp             CC-CCT--TCCEEECCSSC-CSCCC------C-CCTTCCEEECCSSCC-SC-CCC----CCTTCCEEECCSS-CCSCCCC
T ss_pred             ch-hhc--CCCEEECCCCc-CCCCC------C-cCccccEEeCCCCcc-Cc-CCC----cCCCcCEEECCCC-CCCCcch
Confidence            22 222  89999999854 55443      3 568999999998864 43 354    5789999999995 4555542


Q ss_pred             ccccccccccCCCCCCcccEEecCCCCCCceeccCCCccccCCCc-------ceEeeecCCCccccccccchhhcc
Q 037794          198 LEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPML-------WSLTIENCPDMETFISNSVLHVTT  266 (293)
Q Consensus       198 ~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L-------~~L~i~~C~~L~~l~p~~l~~l~~  266 (293)
                           .       . ++|+.|+++++ .++.++.    +.  .+|       +.|++++| +++.+ |.++..+..
T Consensus       178 -----l-------~-~~L~~L~Ls~N-~L~~lp~----~~--~~L~~~~~~L~~L~Ls~N-~l~~l-p~~l~~l~~  231 (571)
T 3cvr_A          178 -----L-------P-ESLEALDVSTN-LLESLPA----VP--VRNHHSEETEIFFRCREN-RITHI-PENILSLDP  231 (571)
T ss_dssp             -----C-------C-TTCCEEECCSS-CCSSCCC----CC----------CCEEEECCSS-CCCCC-CGGGGGSCT
T ss_pred             -----h-------h-CCCCEEECcCC-CCCchhh----HH--HhhhcccccceEEecCCC-cceec-CHHHhcCCC
Confidence                 1       2 78999999985 6776653    22  266       99999998 79998 987766443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.73  E-value=2.2e-09  Score=100.78  Aligned_cols=201  Identities=18%  Similarity=0.177  Sum_probs=110.7

Q ss_pred             CCCCCcceEeccccccceEeccccccccccccccccccceeeccccccccccc-----------cccccccCCCcceEeE
Q 037794            2 GIPNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFC-----------LENYTLEFPSLERVFV   70 (293)
Q Consensus         2 g~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-----------~~~~~~~~~~L~~L~i   70 (293)
                      ...++|+.|+++++ .++.+|...+.        +++|+.|+++++-.+...+           .......+++|+.|+.
T Consensus       346 ~~~~~L~~L~Ls~n-~L~~Lp~~i~~--------l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~  416 (567)
T 1dce_A          346 ATDEQLFRCELSVE-KSTVLQSELES--------CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP  416 (567)
T ss_dssp             STTTTSSSCCCCHH-HHHHHHHHHHH--------HHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCG
T ss_pred             ccCccceeccCChh-hHHhhHHHHHH--------HHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcc
Confidence            34677888888875 66777765544        8888888875542111100           0011234555665552


Q ss_pred             cCCCCcccccc------Ccc--CCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCCCCceEec
Q 037794           71 TRCPNMKTFSQ------GIV--STPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRLKEIW  142 (293)
Q Consensus        71 ~~c~~l~~lp~------~~~--~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~  142 (293)
                      ..+..+..++.      .+.  ....|+.|.++++               .+..++. +..+++|+.|+++++. ++.+|
T Consensus       417 l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n---------------~l~~lp~-~~~l~~L~~L~Ls~N~-l~~lp  479 (567)
T 1dce_A          417 MRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHK---------------DLTVLCH-LEQLLLVTHLDLSHNR-LRALP  479 (567)
T ss_dssp             GGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTS---------------CCSSCCC-GGGGTTCCEEECCSSC-CCCCC
T ss_pred             hhhcccchhhhhhhhcccccccCccCceEEEecCC---------------CCCCCcC-ccccccCcEeecCccc-ccccc
Confidence            11111111110      000  0134777877765               1222332 5667788888888753 55554


Q ss_pred             cCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCC
Q 037794          143 HGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLID  222 (293)
Q Consensus       143 ~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~  222 (293)
                      . .   +..+++|+.|+++++... . +|  .+.++++|+.|++++ +.++.+.....+..        +++|+.|++.+
T Consensus       480 ~-~---~~~l~~L~~L~Ls~N~l~-~-lp--~l~~l~~L~~L~Ls~-N~l~~~~~p~~l~~--------l~~L~~L~L~~  542 (567)
T 1dce_A          480 P-A---LAALRCLEVLQASDNALE-N-VD--GVANLPRLQELLLCN-NRLQQSAAIQPLVS--------CPRLVLLNLQG  542 (567)
T ss_dssp             G-G---GGGCTTCCEEECCSSCCC-C-CG--GGTTCSSCCEEECCS-SCCCSSSTTGGGGG--------CTTCCEEECTT
T ss_pred             h-h---hhcCCCCCEEECCCCCCC-C-Cc--ccCCCCCCcEEECCC-CCCCCCCCcHHHhc--------CCCCCEEEecC
Confidence            2 2   557788888888877533 3 35  377788888888887 44555420122222        37888888887


Q ss_pred             CCCCceeccCCCc-cccCCCcceEe
Q 037794          223 LPKLKRFCNFTGN-IIEMPMLWSLT  246 (293)
Q Consensus       223 ~~~l~~~~~~~~~-~~~l~~L~~L~  246 (293)
                      . .++.++..... ...+|+|+.|+
T Consensus       543 N-~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          543 N-SLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             S-GGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             C-cCCCCccHHHHHHHHCcccCccC
Confidence            4 45554321112 23478888775

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.71  E-value=3.7e-09  Score=83.46  Aligned_cols=95  Identities=13%  Similarity=0.103  Sum_probs=61.0

Q ss_pred             CCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceeccC
Q 037794          153 NNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNF  232 (293)
Q Consensus       153 ~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~  232 (293)
                      .+|++|++++|. +++.... .+.++++|++|++++|..+++-.- ..+..   .. ...++|++|++++|.++++-.. 
T Consensus        61 ~~L~~LDLs~~~-Itd~GL~-~L~~~~~L~~L~L~~C~~ItD~gL-~~L~~---~~-~~~~~L~~L~Ls~C~~ITD~Gl-  132 (176)
T 3e4g_A           61 YKIQAIDATDSC-IMSIGFD-HMEGLQYVEKIRLCKCHYIEDGCL-ERLSQ---LE-NLQKSMLEMEIISCGNVTDKGI-  132 (176)
T ss_dssp             CCEEEEEEESCC-CCGGGGG-GGTTCSCCCEEEEESCTTCCHHHH-HHHHT---CH-HHHHHCCEEEEESCTTCCHHHH-
T ss_pred             ceEeEEeCcCCC-ccHHHHH-HhcCCCCCCEEEeCCCCccCHHHH-HHHHh---cc-cccCCCCEEEcCCCCcCCHHHH-
Confidence            467888888886 5543222 256788888888888887766321 11111   00 0014688888888888877443 


Q ss_pred             CCccccCCCcceEeeecCCCcccc
Q 037794          233 TGNIIEMPMLWSLTIENCPDMETF  256 (293)
Q Consensus       233 ~~~~~~l~~L~~L~i~~C~~L~~l  256 (293)
                       ..+..+++|++|+|++|++++..
T Consensus       133 -~~L~~~~~L~~L~L~~c~~Itd~  155 (176)
T 3e4g_A          133 -IALHHFRNLKYLFLSDLPGVKEK  155 (176)
T ss_dssp             -HHGGGCTTCCEEEEESCTTCCCH
T ss_pred             -HHHhcCCCCCEEECCCCCCCCch
Confidence             45667888888888888888764

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.67  E-value=1.1e-09  Score=102.93  Aligned_cols=116  Identities=21%  Similarity=0.252  Sum_probs=86.8

Q ss_pred             CCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccc
Q 037794          125 RDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNAD  204 (293)
Q Consensus       125 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~  204 (293)
                      ..|+.|+++++ .++.++.     +..+++|+.|+++++... . +|.. +.++++|+.|++.+ +.++.++.   +.  
T Consensus       441 ~~L~~L~Ls~n-~l~~lp~-----~~~l~~L~~L~Ls~N~l~-~-lp~~-~~~l~~L~~L~Ls~-N~l~~lp~---l~--  505 (567)
T 1dce_A          441 ADVRVLHLAHK-DLTVLCH-----LEQLLLVTHLDLSHNRLR-A-LPPA-LAALRCLEVLQASD-NALENVDG---VA--  505 (567)
T ss_dssp             TTCSEEECTTS-CCSSCCC-----GGGGTTCCEEECCSSCCC-C-CCGG-GGGCTTCCEEECCS-SCCCCCGG---GT--
T ss_pred             cCceEEEecCC-CCCCCcC-----ccccccCcEeecCccccc-c-cchh-hhcCCCCCEEECCC-CCCCCCcc---cC--
Confidence            46899999985 4655441     567899999999988644 4 4764 88899999999999 45666642   22  


Q ss_pred             cccCCCCCCcccEEecCCCCCCceeccCCCccccCCCcceEeeecCCCccccccccchhhc
Q 037794          205 KEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVLHVT  265 (293)
Q Consensus       205 ~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~p~~l~~l~  265 (293)
                            .+++|++|+++++ .++.+. .|..+..+++|+.|+++++ +++.+ |+....+.
T Consensus       506 ------~l~~L~~L~Ls~N-~l~~~~-~p~~l~~l~~L~~L~L~~N-~l~~~-~~~~~~l~  556 (567)
T 1dce_A          506 ------NLPRLQELLLCNN-RLQQSA-AIQPLVSCPRLVLLNLQGN-SLCQE-EGIQERLA  556 (567)
T ss_dssp             ------TCSSCCEEECCSS-CCCSSS-TTGGGGGCTTCCEEECTTS-GGGGS-SSCTTHHH
T ss_pred             ------CCCCCcEEECCCC-CCCCCC-CcHHHhcCCCCCEEEecCC-cCCCC-ccHHHHHH
Confidence                  2499999999985 676652 1367889999999999998 58888 76555443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.66  E-value=9.3e-08  Score=75.61  Aligned_cols=108  Identities=19%  Similarity=0.289  Sum_probs=63.6

Q ss_pred             CccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCccccccccccccccccc
Q 037794          126 DIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADK  205 (293)
Q Consensus       126 ~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~  205 (293)
                      +|+.|+++++. ++.+  ..   +..+++|++|+++++. +..+ |...+..+++|+.|+++++ .+..++....+..  
T Consensus        43 ~L~~L~Ls~N~-l~~~--~~---l~~l~~L~~L~Ls~N~-l~~~-~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~--  111 (176)
T 1a9n_A           43 QFDAIDFSDNE-IRKL--DG---FPLLRRLKTLLVNNNR-ICRI-GEGLDQALPDLTELILTNN-SLVELGDLDPLAS--  111 (176)
T ss_dssp             CCSEEECCSSC-CCEE--CC---CCCCSSCCEEECCSSC-CCEE-CSCHHHHCTTCCEEECCSC-CCCCGGGGGGGGG--
T ss_pred             CCCEEECCCCC-CCcc--cc---cccCCCCCEEECCCCc-cccc-CcchhhcCCCCCEEECCCC-cCCcchhhHhhhc--
Confidence            55555555532 4433  12   4456778888887775 3343 5555577888888888874 4555543222222  


Q ss_pred             ccCCCCCCcccEEecCCCCCCceeccCC-CccccCCCcceEeeecCC
Q 037794          206 EHIGPLFPRLFILRLIDLPKLKRFCNFT-GNIIEMPMLWSLTIENCP  251 (293)
Q Consensus       206 ~~~~~~f~~L~~L~l~~~~~l~~~~~~~-~~~~~l~~L~~L~i~~C~  251 (293)
                            +++|++|++.+++ +..++... ..+..+++|+.|++++++
T Consensus       112 ------l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A          112 ------LKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             ------CTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             ------CCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence                  3788888888753 44443100 026678888888888763

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.59  E-value=2.4e-07  Score=74.35  Aligned_cols=62  Identities=24%  Similarity=0.251  Sum_probs=31.5

Q ss_pred             ccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCc
Q 037794          122 IGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNC  189 (293)
Q Consensus       122 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c  189 (293)
                      ..+++|+.|+++++ .++.++...   +..+++|++|+++++... .+.| ..+..+++|++|++.++
T Consensus        75 ~~l~~L~~L~Ls~N-~l~~~~~~~---~~~l~~L~~L~L~~N~l~-~~~~-~~~~~l~~L~~L~L~~N  136 (192)
T 1w8a_A           75 EGASHIQELQLGEN-KIKEISNKM---FLGLHQLKTLNLYDNQIS-CVMP-GSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             TTCTTCCEEECCSC-CCCEECSSS---STTCTTCCEEECCSSCCC-EECT-TSSTTCTTCCEEECTTC
T ss_pred             CCcccCCEEECCCC-cCCccCHHH---hcCCCCCCEEECCCCcCC-eeCH-HHhhcCCCCCEEEeCCC
Confidence            34455555555552 244444322   344566666666665432 2222 23555666666666653

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.59  E-value=8.5e-08  Score=75.84  Aligned_cols=129  Identities=13%  Similarity=0.172  Sum_probs=64.2

Q ss_pred             ccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccCccCCCCeeEEEeccccccccccccCccchhhhh
Q 037794           36 FNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQ  115 (293)
Q Consensus        36 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~  115 (293)
                      +++|+.|+++++ .+..++.  .....++|+.|+++++ .++.+ ..+..+++|+.|+++++               .+.
T Consensus        18 ~~~L~~L~l~~n-~l~~i~~--~~~~~~~L~~L~Ls~N-~l~~~-~~l~~l~~L~~L~Ls~N---------------~l~   77 (176)
T 1a9n_A           18 AVRDRELDLRGY-KIPVIEN--LGATLDQFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNNN---------------RIC   77 (176)
T ss_dssp             TTSCEEEECTTS-CCCSCCC--GGGGTTCCSEEECCSS-CCCEE-CCCCCCSSCCEEECCSS---------------CCC
T ss_pred             cCCceEEEeeCC-CCchhHH--hhhcCCCCCEEECCCC-CCCcc-cccccCCCCCEEECCCC---------------ccc
Confidence            556667776665 2333321  1122336777777665 34444 44555666666666654               111


Q ss_pred             hhhhhh-ccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChh---HHhccCCCCeEEecCc
Q 037794          116 KRYEEM-IGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPAN---LLRCLSNLRWLEVRNC  189 (293)
Q Consensus       116 ~l~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~---~~~~l~~L~~L~i~~c  189 (293)
                      .+++.. ..+++|+.|+++++. ++.++.-.  .+..+++|+.|+++++... . +|..   .+..+++|+.|++.++
T Consensus        78 ~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~--~l~~l~~L~~L~l~~N~i~-~-~~~~~~~~~~~l~~L~~Ld~~~n  150 (176)
T 1a9n_A           78 RIGEGLDQALPDLTELILTNNS-LVELGDLD--PLASLKSLTYLCILRNPVT-N-KKHYRLYVIYKVPQVRVLDFQKV  150 (176)
T ss_dssp             EECSCHHHHCTTCCEEECCSCC-CCCGGGGG--GGGGCTTCCEEECCSSGGG-G-STTHHHHHHHHCTTCSEETTEEC
T ss_pred             ccCcchhhcCCCCCEEECCCCc-CCcchhhH--hhhcCCCCCEEEecCCCCC-C-cHhHHHHHHHHCCccceeCCCcC
Confidence            122111 445566666666532 33333100  1334566666666665432 2 1332   3555666666666654

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.49  E-value=8.1e-07  Score=71.38  Aligned_cols=61  Identities=18%  Similarity=0.348  Sum_probs=27.6

Q ss_pred             ccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecC
Q 037794          122 IGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRN  188 (293)
Q Consensus       122 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~  188 (293)
                      ..+++|+.|+++++ .++.+..+.   +..+++|++|+++++. +..+ +...+.++++|+.|++.+
T Consensus        51 ~~l~~L~~L~Ls~N-~i~~i~~~~---f~~l~~L~~L~Ls~N~-l~~i-~~~~f~~l~~L~~L~L~~  111 (193)
T 2wfh_A           51 SNYKHLTLIDLSNN-RISTLSNQS---FSNMTQLLTLILSYNR-LRCI-PPRTFDGLKSLRLLSLHG  111 (193)
T ss_dssp             GGCTTCCEEECCSS-CCCCCCTTT---TTTCTTCCEEECCSSC-CCBC-CTTTTTTCTTCCEEECCS
T ss_pred             hcccCCCEEECCCC-cCCEeCHhH---ccCCCCCCEEECCCCc-cCEe-CHHHhCCCCCCCEEECCC
Confidence            34444445544442 233333222   3344555555555543 2222 333355555555555555

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.48  E-value=6e-07  Score=72.16  Aligned_cols=106  Identities=16%  Similarity=0.163  Sum_probs=69.1

Q ss_pred             CCCcceEeEcCCCCccccccCccCCCCeeEEEeccccccccccccCccchhhhhhhh-hhhccCCCccEEEecCCCCceE
Q 037794           62 FPSLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRY-EEMIGFRDIERLQLSHFPRLKE  140 (293)
Q Consensus        62 ~~~L~~L~i~~c~~l~~lp~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~l~~  140 (293)
                      .++|++|+++++ .++.+|..+..+++|+.|+++++               .+..+. ..+..+++|+.|+++++ .++.
T Consensus        30 ~~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N---------------~i~~i~~~~f~~l~~L~~L~Ls~N-~l~~   92 (193)
T 2wfh_A           30 PRDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNN---------------RISTLSNQSFSNMTQLLTLILSYN-RLRC   92 (193)
T ss_dssp             CTTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSS---------------CCCCCCTTTTTTCTTCCEEECCSS-CCCB
T ss_pred             CCCCCEEECCCC-cCchhHHHhhcccCCCEEECCCC---------------cCCEeCHhHccCCCCCCEEECCCC-ccCE
Confidence            356777777764 45666666677777777777754               111111 22356777888888774 3665


Q ss_pred             eccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCc
Q 037794          141 IWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNC  189 (293)
Q Consensus       141 ~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c  189 (293)
                      ++...   +..+++|++|+++++.. .. ++...+..+++|+.|++.+.
T Consensus        93 i~~~~---f~~l~~L~~L~L~~N~l-~~-~~~~~~~~l~~L~~L~L~~N  136 (193)
T 2wfh_A           93 IPPRT---FDGLKSLRLLSLHGNDI-SV-VPEGAFNDLSALSHLAIGAN  136 (193)
T ss_dssp             CCTTT---TTTCTTCCEEECCSSCC-CB-CCTTTTTTCTTCCEEECCSS
T ss_pred             eCHHH---hCCCCCCCEEECCCCCC-Ce-eChhhhhcCccccEEEeCCC
Confidence            55443   55678888888887753 33 36656777888888888874

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.48  E-value=4.6e-06  Score=74.80  Aligned_cols=76  Identities=7%  Similarity=0.057  Sum_probs=40.1

Q ss_pred             CcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccCccC
Q 037794            6 SLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGIVS   85 (293)
Q Consensus         6 ~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~   85 (293)
                      +|+.+.+..  .++.++...-.        -.+|+.+.+.+  +++.+... ...+|++|+.+.+.+ .+++.++.....
T Consensus       136 ~L~~i~l~~--~i~~I~~~aF~--------~~~L~~i~lp~--~l~~I~~~-aF~~c~~L~~l~l~~-n~l~~I~~~aF~  201 (401)
T 4fdw_A          136 QIAKVVLNE--GLKSIGDMAFF--------NSTVQEIVFPS--TLEQLKED-IFYYCYNLKKADLSK-TKITKLPASTFV  201 (401)
T ss_dssp             CCSEEECCT--TCCEECTTTTT--------TCCCCEEECCT--TCCEECSS-TTTTCTTCCEEECTT-SCCSEECTTTTT
T ss_pred             CccEEEeCC--CccEECHHhcC--------CCCceEEEeCC--CccEehHH-HhhCcccCCeeecCC-CcceEechhhEe
Confidence            456666543  35555543211        12466666654  34444332 234667777777764 245555555444


Q ss_pred             CCCeeEEEec
Q 037794           86 TPKLHEVQVS   95 (293)
Q Consensus        86 ~~~L~~L~l~   95 (293)
                      +++|+.+.+.
T Consensus       202 ~~~L~~l~lp  211 (401)
T 4fdw_A          202 YAGIEEVLLP  211 (401)
T ss_dssp             TCCCSEEECC
T ss_pred             ecccCEEEeC
Confidence            5666666664

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.47  E-value=1.1e-07  Score=74.94  Aligned_cols=39  Identities=15%  Similarity=0.346  Sum_probs=15.2

Q ss_pred             CccEEEeccCCCCCccCChhHHhccCCCCeEEecCccccc
Q 037794          154 NLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLE  193 (293)
Q Consensus       154 ~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~  193 (293)
                      +|++|++++|..+++... ..+..+++|++|++++|+.++
T Consensus       115 ~L~~L~Ls~C~~ITD~Gl-~~L~~~~~L~~L~L~~c~~It  153 (176)
T 3e4g_A          115 SMLEMEIISCGNVTDKGI-IALHHFRNLKYLFLSDLPGVK  153 (176)
T ss_dssp             HCCEEEEESCTTCCHHHH-HHGGGCTTCCEEEEESCTTCC
T ss_pred             CCCEEEcCCCCcCCHHHH-HHHhcCCCCCEEECCCCCCCC
Confidence            344444444444433211 112334444444444444443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.46  E-value=5.1e-07  Score=78.67  Aligned_cols=87  Identities=15%  Similarity=0.141  Sum_probs=53.5

Q ss_pred             CCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCccc-EEecCCCCCCceec
Q 037794          152 FNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLF-ILRLIDLPKLKRFC  230 (293)
Q Consensus       152 l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~-~L~l~~~~~l~~~~  230 (293)
                      +++|+++++.++. ++.+ +..++.++++|+++++.+.  ++.|.. ..+..       + ++|+ ++.+.+  +++.+.
T Consensus       225 ~~~L~~l~L~~n~-i~~I-~~~aF~~~~~L~~l~l~~n--i~~I~~-~aF~~-------~-~~L~~~l~l~~--~l~~I~  289 (329)
T 3sb4_A          225 MPNLVSLDISKTN-ATTI-PDFTFAQKKYLLKIKLPHN--LKTIGQ-RVFSN-------C-GRLAGTLELPA--SVTAIE  289 (329)
T ss_dssp             CTTCCEEECTTBC-CCEE-CTTTTTTCTTCCEEECCTT--CCEECT-TTTTT-------C-TTCCEEEEECT--TCCEEC
T ss_pred             cCCCeEEECCCCC-ccee-cHhhhhCCCCCCEEECCcc--cceehH-HHhhC-------C-hhccEEEEEcc--cceEEc
Confidence            4677777777654 4443 6666777777777777652  555542 11112       2 6677 777766  666765


Q ss_pred             cCCCccccCCCcceEeeecCCCcccc
Q 037794          231 NFTGNIIEMPMLWSLTIENCPDMETF  256 (293)
Q Consensus       231 ~~~~~~~~l~~L~~L~i~~C~~L~~l  256 (293)
                      .  ..+..+++|+++++.+. +++.+
T Consensus       290 ~--~aF~~c~~L~~l~l~~n-~i~~I  312 (329)
T 3sb4_A          290 F--GAFMGCDNLRYVLATGD-KITTL  312 (329)
T ss_dssp             T--TTTTTCTTEEEEEECSS-CCCEE
T ss_pred             h--hhhhCCccCCEEEeCCC-ccCcc
Confidence            5  56667777777776543 45555

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.41  E-value=1.5e-06  Score=68.52  Aligned_cols=108  Identities=21%  Similarity=0.282  Sum_probs=59.4

Q ss_pred             CCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccc
Q 037794          125 RDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNAD  204 (293)
Q Consensus       125 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~  204 (293)
                      ++|+.|+++++. ++.++...   +..+++|++|+++++. +..+ +...+.++++|+.|++.+ ..++.++. ..+.  
T Consensus        28 ~~l~~L~l~~n~-l~~~~~~~---~~~l~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~-N~l~~~~~-~~~~--   97 (177)
T 2o6r_A           28 SSATRLELESNK-LQSLPHGV---FDKLTQLTKLSLSQNQ-IQSL-PDGVFDKLTKLTILYLHE-NKLQSLPN-GVFD--   97 (177)
T ss_dssp             TTCSEEECCSSC-CCCCCTTT---TTTCTTCSEEECCSSC-CCCC-CTTTTTTCTTCCEEECCS-SCCCCCCT-TTTT--
T ss_pred             CCCcEEEeCCCc-ccEeCHHH---hcCcccccEEECCCCc-ceEe-ChhHccCCCccCEEECCC-CCccccCH-HHhh--
Confidence            344555554422 33333222   3455677777777664 3332 444456677777777777 34444432 1111  


Q ss_pred             cccCCCCCCcccEEecCCCCCCceeccCCCccccCCCcceEeeecCC
Q 037794          205 KEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCP  251 (293)
Q Consensus       205 ~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~  251 (293)
                            .+++|++|++.+. .++.++.  ..+..+++|++|++++++
T Consensus        98 ------~l~~L~~L~l~~N-~l~~~~~--~~~~~l~~L~~L~l~~N~  135 (177)
T 2o6r_A           98 ------KLTQLKELALDTN-QLKSVPD--GIFDRLTSLQKIWLHTNP  135 (177)
T ss_dssp             ------TCTTCCEEECCSS-CCSCCCT--TTTTTCTTCCEEECCSSC
T ss_pred             ------CCcccCEEECcCC-cceEeCH--HHhcCCcccCEEEecCCC
Confidence                  2367777777764 5655543  334567778888877763

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.40  E-value=1.2e-05  Score=72.07  Aligned_cols=53  Identities=11%  Similarity=0.187  Sum_probs=30.8

Q ss_pred             ccceeeccccccccccccccccccCCCcceEeEcCCCCccccc-cCccCCCCeeEEEecc
Q 037794           38 ELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFS-QGIVSTPKLHEVQVSK   96 (293)
Q Consensus        38 ~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp-~~~~~~~~L~~L~l~~   96 (293)
                      +|+.+.+.+  +++.+.... ..+ .+|+.+.+.+  .++.++ ..+..|++|+.+.+..
T Consensus       136 ~L~~i~l~~--~i~~I~~~a-F~~-~~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~  189 (401)
T 4fdw_A          136 QIAKVVLNE--GLKSIGDMA-FFN-STVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSK  189 (401)
T ss_dssp             CCSEEECCT--TCCEECTTT-TTT-CCCCEEECCT--TCCEECSSTTTTCTTCCEEECTT
T ss_pred             CccEEEeCC--CccEECHHh-cCC-CCceEEEeCC--CccEehHHHhhCcccCCeeecCC
Confidence            577777653  244444331 112 3677777764  566554 3446678888887764

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.39  E-value=1.6e-06  Score=69.58  Aligned_cols=106  Identities=16%  Similarity=0.276  Sum_probs=48.9

Q ss_pred             ccceeeccccccccccccccccccCCCcceEeEcCCCCcccc-ccCccCCCCeeEEEeccccccccccccCccchhhhhh
Q 037794           38 ELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTF-SQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQK  116 (293)
Q Consensus        38 ~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l-p~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~  116 (293)
                      +|++|+++++ .+..++.......+++|+.|+++++ .++.+ |..+..+++|+.|+++++               .+..
T Consensus        30 ~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N---------------~l~~   92 (192)
T 1w8a_A           30 HTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGEN---------------KIKE   92 (192)
T ss_dssp             TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSC---------------CCCE
T ss_pred             CCCEEECCCC-cCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECCCC---------------cCCc
Confidence            5555555554 2333333222345556666666554 23322 444555556666665543               1111


Q ss_pred             hh-hhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCC
Q 037794          117 RY-EEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCA  164 (293)
Q Consensus       117 l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~  164 (293)
                      +. ..+..+++|+.|+++++ .+..+....   +..+++|++|+++++.
T Consensus        93 ~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~---~~~l~~L~~L~L~~N~  137 (192)
T 1w8a_A           93 ISNKMFLGLHQLKTLNLYDN-QISCVMPGS---FEHLNSLTSLNLASNP  137 (192)
T ss_dssp             ECSSSSTTCTTCCEEECCSS-CCCEECTTS---STTCTTCCEEECTTCC
T ss_pred             cCHHHhcCCCCCCEEECCCC-cCCeeCHHH---hhcCCCCCEEEeCCCC
Confidence            11 11234555666666553 244333222   3345556666665554

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.37  E-value=2.2e-06  Score=67.55  Aligned_cols=61  Identities=18%  Similarity=0.284  Sum_probs=29.1

Q ss_pred             cCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCc
Q 037794          123 GFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNC  189 (293)
Q Consensus       123 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c  189 (293)
                      .+++|+.|+++++ .++.++...   +..+++|++|+++++. +..+ +...+..+++|++|++.++
T Consensus        74 ~l~~L~~L~l~~N-~l~~~~~~~---~~~l~~L~~L~l~~N~-l~~~-~~~~~~~l~~L~~L~l~~N  134 (177)
T 2o6r_A           74 KLTKLTILYLHEN-KLQSLPNGV---FDKLTQLKELALDTNQ-LKSV-PDGIFDRLTSLQKIWLHTN  134 (177)
T ss_dssp             TCTTCCEEECCSS-CCCCCCTTT---TTTCTTCCEEECCSSC-CSCC-CTTTTTTCTTCCEEECCSS
T ss_pred             CCCccCEEECCCC-CccccCHHH---hhCCcccCEEECcCCc-ceEe-CHHHhcCCcccCEEEecCC
Confidence            4455555555543 233332221   2344566666665553 2332 4444455566666666553

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.36  E-value=4.6e-07  Score=87.48  Aligned_cols=110  Identities=21%  Similarity=0.220  Sum_probs=55.8

Q ss_pred             ccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCccccccccccccc
Q 037794          122 IGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEEL  201 (293)
Q Consensus       122 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~  201 (293)
                      ..++.|+.|+++++. +..++.+    +..+++|++|+++++..- . +|.. +..+++|+.|+++++ .++.++  ..+
T Consensus       221 ~~l~~L~~L~Ls~n~-l~~l~~~----~~~l~~L~~L~Ls~N~l~-~-lp~~-~~~l~~L~~L~Ls~N-~l~~lp--~~~  289 (727)
T 4b8c_D          221 YDDQLWHALDLSNLQ-IFNISAN----IFKYDFLTRLYLNGNSLT-E-LPAE-IKNLSNLRVLDLSHN-RLTSLP--AEL  289 (727)
T ss_dssp             -CCCCCCEEECTTSC-CSCCCGG----GGGCCSCSCCBCTTSCCS-C-CCGG-GGGGTTCCEEECTTS-CCSSCC--SSG
T ss_pred             ccCCCCcEEECCCCC-CCCCChh----hcCCCCCCEEEeeCCcCc-c-cChh-hhCCCCCCEEeCcCC-cCCccC--hhh
Confidence            445566666666543 3333321    224566666666655433 2 2543 455666666666663 344443  112


Q ss_pred             ccccccCCCCCCcccEEecCCCCCCceeccCCCccccCCCcceEeeecCCCccc
Q 037794          202 NADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMET  255 (293)
Q Consensus       202 ~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~~L~~  255 (293)
                      ..       + ++|++|++.++ .++.++   ..+..+++|+.|+++++ +|+.
T Consensus       290 ~~-------l-~~L~~L~L~~N-~l~~lp---~~~~~l~~L~~L~L~~N-~l~~  330 (727)
T 4b8c_D          290 GS-------C-FQLKYFYFFDN-MVTTLP---WEFGNLCNLQFLGVEGN-PLEK  330 (727)
T ss_dssp             GG-------G-TTCSEEECCSS-CCCCCC---SSTTSCTTCCCEECTTS-CCCS
T ss_pred             cC-------C-CCCCEEECCCC-CCCccC---hhhhcCCCccEEeCCCC-ccCC
Confidence            11       2 56666666654 444443   34556666666666665 3443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.23  E-value=1.1e-08  Score=82.73  Aligned_cols=107  Identities=14%  Similarity=0.104  Sum_probs=57.5

Q ss_pred             cccCCCcceEeEcCCCCccccccCccCCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCCCCc
Q 037794           59 TLEFPSLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRL  138 (293)
Q Consensus        59 ~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l  138 (293)
                      ...+++|+.|+++++ .++.+| .+..+++|+.|+++++               .+..++.....+++|+.|+++++ .+
T Consensus        44 ~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n---------------~l~~l~~~~~~~~~L~~L~L~~N-~l  105 (198)
T 1ds9_A           44 LSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRN---------------LIKKIENLDAVADTLEELWISYN-QI  105 (198)
T ss_dssp             HHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEE---------------EECSCSSHHHHHHHCSEEEEEEE-EC
T ss_pred             HhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCC---------------CcccccchhhcCCcCCEEECcCC-cC
Confidence            345666666666654 344454 4555666666666654               11122222233456666666664 23


Q ss_pred             eEeccCCCCCcccCCCccEEEeccCCCCCccCCh-hHHhccCCCCeEEecCcc
Q 037794          139 KEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPA-NLLRCLSNLRWLEVRNCD  190 (293)
Q Consensus       139 ~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~-~~~~~l~~L~~L~i~~c~  190 (293)
                      +.++  .   +..+++|++|+++++... ++ +. ..+..+++|++|++.+++
T Consensus       106 ~~l~--~---~~~l~~L~~L~l~~N~i~-~~-~~~~~l~~l~~L~~L~l~~N~  151 (198)
T 1ds9_A          106 ASLS--G---IEKLVNLRVLYMSNNKIT-NW-GEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             CCHH--H---HHHHHHSSEEEESEEECC-CH-HHHHHHTTTTTCSEEEECSCH
T ss_pred             CcCC--c---cccCCCCCEEECCCCcCC-ch-hHHHHHhcCCCCCEEEecCCc
Confidence            3332  1   335567777777766432 21 22 346667777777777753

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.21  E-value=1.4e-06  Score=84.03  Aligned_cols=107  Identities=12%  Similarity=0.128  Sum_probs=59.5

Q ss_pred             ccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccCccCCCCeeEEEeccccccccccccCccchhhhh
Q 037794           36 FNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQ  115 (293)
Q Consensus        36 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~  115 (293)
                      +++|+.|+++++. +..++..  .+.+++|+.|+++++ .++.+|..+..+++|+.|+++++               .+.
T Consensus       223 l~~L~~L~Ls~n~-l~~l~~~--~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N---------------~l~  283 (727)
T 4b8c_D          223 DQLWHALDLSNLQ-IFNISAN--IFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHN---------------RLT  283 (727)
T ss_dssp             CCCCCEEECTTSC-CSCCCGG--GGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTS---------------CCS
T ss_pred             CCCCcEEECCCCC-CCCCChh--hcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCC---------------cCC
Confidence            5666666666654 2344433  345666666666664 44466665666666666666654               122


Q ss_pred             hhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCC
Q 037794          116 KRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANM  166 (293)
Q Consensus       116 ~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l  166 (293)
                      .++..+..+++|+.|+++++ .++.++.+    +..+++|+.|+++++...
T Consensus       284 ~lp~~~~~l~~L~~L~L~~N-~l~~lp~~----~~~l~~L~~L~L~~N~l~  329 (727)
T 4b8c_D          284 SLPAELGSCFQLKYFYFFDN-MVTTLPWE----FGNLCNLQFLGVEGNPLE  329 (727)
T ss_dssp             SCCSSGGGGTTCSEEECCSS-CCCCCCSS----TTSCTTCCCEECTTSCCC
T ss_pred             ccChhhcCCCCCCEEECCCC-CCCccChh----hhcCCCccEEeCCCCccC
Confidence            33444455666666666664 34444321    445566666666666533

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.20  E-value=5.3e-05  Score=67.51  Aligned_cols=30  Identities=10%  Similarity=0.258  Sum_probs=15.8

Q ss_pred             ecCCCcccc-ccccchhhccCCCCCcccccc
Q 037794          248 ENCPDMETF-ISNSVLHVTTDNKEPQKLTSE  277 (293)
Q Consensus       248 ~~C~~L~~l-~p~~l~~l~~~~~~~~~l~~~  277 (293)
                      .+|++|+.+ +|.++......-.+|.+|+.+
T Consensus       363 ~~C~~L~~i~lp~~~~~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          363 QGCINLKKVELPKRLEQYRYDFEDTTKFKWI  393 (394)
T ss_dssp             TTCTTCCEEEEEGGGGGGGGGBCTTCEEEEE
T ss_pred             hCCCCCCEEEECCCCEEhhheecCCCCCcEE
Confidence            346666665 566555554444445555443

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.19  E-value=2.7e-06  Score=75.25  Aligned_cols=60  Identities=17%  Similarity=0.254  Sum_probs=32.2

Q ss_pred             cccccceeecccccc--cc-ccc----cccccccCCCcceEeEcCCCCccccccCccCCCCeeEEEeccc
Q 037794           35 AFNELKFLELDDLPR--LT-SFC----LENYTLEFPSLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKK   97 (293)
Q Consensus        35 ~~~~L~~L~l~~~~~--l~-~~~----~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~L~~L~l~~c   97 (293)
                      .|++|+.|.+.+...  .. .|.    .......+|+|++|.+.++..+ .++. + ..++|+.|.+..|
T Consensus       137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~  203 (362)
T 2ra8_A          137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISG  203 (362)
T ss_dssp             HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECS
T ss_pred             hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecC
Confidence            477888887755311  00 000    1111235678888888776333 2332 2 3677788877655

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.13  E-value=7.2e-07  Score=78.91  Aligned_cols=168  Identities=15%  Similarity=0.150  Sum_probs=87.6

Q ss_pred             cccCCCcceEeEcCCCC----c-----cccccCccCCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccE
Q 037794           59 TLEFPSLERVFVTRCPN----M-----KTFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIER  129 (293)
Q Consensus        59 ~~~~~~L~~L~i~~c~~----l-----~~lp~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~  129 (293)
                      ...+++|+.|.|.+...    +     ..+...+..+|+|+.|.+.++..        .       .+..  ..+++|+.
T Consensus       135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~--------l-------~l~~--~~~~~L~~  197 (362)
T 2ra8_A          135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNN--------L-------SIGK--KPRPNLKS  197 (362)
T ss_dssp             HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBT--------C-------BCCS--CBCTTCSE
T ss_pred             hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCC--------c-------eecc--ccCCCCcE
Confidence            34678899988865311    1     11323345678888888876510        0       1111  13678888


Q ss_pred             EEecCCCCceEeccCCCCCcccCCCccEEEeccCCC-------CCccCChhHHhccCCCCeEEecCcccccccccccccc
Q 037794          130 LQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCAN-------MSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELN  202 (293)
Q Consensus       130 L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~-------l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~  202 (293)
                      |.+..+. +....... +....+++|++|+++.+..       ..++-+.-....+|+|+.|++.+|.--.....  .+.
T Consensus       198 L~L~~~~-l~~~~l~~-l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~--~la  273 (362)
T 2ra8_A          198 LEIISGG-LPDSVVED-ILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVE--MFL  273 (362)
T ss_dssp             EEEECSB-CCHHHHHH-HHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHH--HHH
T ss_pred             EEEecCC-CChHHHHH-HHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHH--HHH
Confidence            8887643 32211111 1122568888888863211       11110110013478888888887653221110  000


Q ss_pred             cccccCCCCCCcccEEecCCCCCCceecc--CCCccccCCCcceEeeecCCCcc
Q 037794          203 ADKEHIGPLFPRLFILRLIDLPKLKRFCN--FTGNIIEMPMLWSLTIENCPDME  254 (293)
Q Consensus       203 ~~~~~~~~~f~~L~~L~l~~~~~l~~~~~--~~~~~~~l~~L~~L~i~~C~~L~  254 (293)
                      .     ...+|+|++|+++. ..+.+...  ....+..+++|+.|++++| .+.
T Consensus       274 ~-----a~~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n-~i~  320 (362)
T 2ra8_A          274 E-----SDILPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYN-YLS  320 (362)
T ss_dssp             H-----CSSGGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSB-BCC
T ss_pred             h-----CccCCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEECCCC-cCC
Confidence            0     01348888888865 45655210  0133456788888888887 354

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.05  E-value=3.2e-05  Score=60.83  Aligned_cols=96  Identities=17%  Similarity=0.236  Sum_probs=64.2

Q ss_pred             CCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceeccC
Q 037794          153 NNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNF  232 (293)
Q Consensus       153 ~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~  232 (293)
                      ++|++|+++++. +..+ +...+.++++|+.|++.+ +.++.++. ..+.        .+++|++|++.+ ..++.++. 
T Consensus        33 ~~L~~L~Ls~N~-l~~~-~~~~~~~l~~L~~L~Ls~-N~l~~i~~-~~~~--------~l~~L~~L~L~~-N~l~~l~~-   98 (174)
T 2r9u_A           33 TDKQRLWLNNNQ-ITKL-EPGVFDHLVNLQQLYFNS-NKLTAIPT-GVFD--------KLTQLTQLDLND-NHLKSIPR-   98 (174)
T ss_dssp             TTCSEEECCSSC-CCCC-CTTTTTTCTTCCEEECCS-SCCCCCCT-TTTT--------TCTTCCEEECCS-SCCCCCCT-
T ss_pred             CCCcEEEeCCCC-cccc-CHHHhcCCcCCCEEECCC-CCCCccCh-hHhC--------CcchhhEEECCC-CccceeCH-
Confidence            788888888776 4443 444577888899999888 46666652 1111        238888999887 46776653 


Q ss_pred             CCccccCCCcceEeeecCCCccccccccchhhc
Q 037794          233 TGNIIEMPMLWSLTIENCPDMETFISNSVLHVT  265 (293)
Q Consensus       233 ~~~~~~l~~L~~L~i~~C~~L~~l~p~~l~~l~  265 (293)
                       ..+..+++|++|++++++ +... |..+..+.
T Consensus        99 -~~~~~l~~L~~L~L~~N~-~~c~-~~~~~~l~  128 (174)
T 2r9u_A           99 -GAFDNLKSLTHIYLYNNP-WDCE-CRDIMYLR  128 (174)
T ss_dssp             -TTTTTCTTCSEEECCSSC-BCTT-BGGGHHHH
T ss_pred             -HHhccccCCCEEEeCCCC-cccc-cccHHHHH
Confidence             447778899999998863 5555 54444433

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.01  E-value=3.4e-05  Score=60.43  Aligned_cols=102  Identities=18%  Similarity=0.154  Sum_probs=66.4

Q ss_pred             ccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccc
Q 037794          127 IERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKE  206 (293)
Q Consensus       127 L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~  206 (293)
                      .+.+++++ ..++.++.      .-+++|++|+++++. +..+ +...+.++++|++|++.+ +.++.++. ..+.    
T Consensus        11 ~~~l~~s~-n~l~~ip~------~~~~~l~~L~L~~N~-i~~~-~~~~~~~l~~L~~L~Ls~-N~l~~l~~-~~f~----   75 (170)
T 3g39_A           11 GTTVDCSG-KSLASVPT------GIPTTTQVLYLYDNQ-ITKL-EPGVFDRLTQLTRLDLDN-NQLTVLPA-GVFD----   75 (170)
T ss_dssp             TTEEECTT-SCCSSCCS------CCCTTCSEEECCSSC-CCCC-CTTTTTTCTTCSEEECCS-SCCCCCCT-TTTT----
T ss_pred             CCEEEeCC-CCcCccCc------cCCCCCcEEEcCCCc-CCcc-ChhhhcCcccCCEEECCC-CCcCccCh-hhcc----
Confidence            34566665 33444442      223788888888775 3333 444577788899999888 45666652 1111    


Q ss_pred             cCCCCCCcccEEecCCCCCCceeccCCCccccCCCcceEeeecC
Q 037794          207 HIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENC  250 (293)
Q Consensus       207 ~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C  250 (293)
                          .+++|++|++.+. .++.++.  ..+..+++|++|++++.
T Consensus        76 ----~l~~L~~L~L~~N-~l~~~~~--~~~~~l~~L~~L~L~~N  112 (170)
T 3g39_A           76 ----KLTQLTQLSLNDN-QLKSIPR--GAFDNLKSLTHIWLLNN  112 (170)
T ss_dssp             ----TCTTCCEEECCSS-CCCCCCT--TTTTTCTTCCEEECCSS
T ss_pred             ----CCCCCCEEECCCC-ccCEeCH--HHhcCCCCCCEEEeCCC
Confidence                2388889998884 6777654  45778889999998875

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=97.99  E-value=1.7e-07  Score=75.63  Aligned_cols=127  Identities=20%  Similarity=0.227  Sum_probs=72.2

Q ss_pred             CcceEeEcCC-CCccccccCccCCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCCCCceEec
Q 037794           64 SLERVFVTRC-PNMKTFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRLKEIW  142 (293)
Q Consensus        64 ~L~~L~i~~c-~~l~~lp~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~  142 (293)
                      .|+...+.+. +.++.+|..+..+++|+.|+++++               .+..++ .+..+++|+.|+++++. ++.++
T Consensus        24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n---------------~l~~l~-~~~~l~~L~~L~l~~n~-l~~l~   86 (198)
T 1ds9_A           24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTN---------------NIEKIS-SLSGMENLRILSLGRNL-IKKIE   86 (198)
T ss_dssp             TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEE---------------EESCCC-CHHHHTTCCEEEEEEEE-ECSCS
T ss_pred             chheeEeccccCcHhhhhHHHhcCCCCCEEECCCC---------------CCcccc-ccccCCCCCEEECCCCC-ccccc
Confidence            3444444432 345555556667788888888765               111222 34566788888887753 33332


Q ss_pred             cCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCC
Q 037794          143 HGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLID  222 (293)
Q Consensus       143 ~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~  222 (293)
                      . .   ...+++|++|++++|. +..+ +  .+..+++|+.|++.++ .++.++....+.        .+++|++|++.+
T Consensus        87 ~-~---~~~~~~L~~L~L~~N~-l~~l-~--~~~~l~~L~~L~l~~N-~i~~~~~~~~l~--------~l~~L~~L~l~~  149 (198)
T 1ds9_A           87 N-L---DAVADTLEELWISYNQ-IASL-S--GIEKLVNLRVLYMSNN-KITNWGEIDKLA--------ALDKLEDLLLAG  149 (198)
T ss_dssp             S-H---HHHHHHCSEEEEEEEE-CCCH-H--HHHHHHHSSEEEESEE-ECCCHHHHHHHT--------TTTTCSEEEECS
T ss_pred             c-h---hhcCCcCCEEECcCCc-CCcC-C--ccccCCCCCEEECCCC-cCCchhHHHHHh--------cCCCCCEEEecC
Confidence            1 1   2345778888887774 3332 3  3666788888888873 344433211111        237788888877


Q ss_pred             CC
Q 037794          223 LP  224 (293)
Q Consensus       223 ~~  224 (293)
                      ++
T Consensus       150 N~  151 (198)
T 1ds9_A          150 NP  151 (198)
T ss_dssp             CH
T ss_pred             Cc
Confidence            53

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=97.98  E-value=1.8e-05  Score=62.25  Aligned_cols=61  Identities=20%  Similarity=0.268  Sum_probs=29.4

Q ss_pred             ccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecC
Q 037794          122 IGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRN  188 (293)
Q Consensus       122 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~  188 (293)
                      ..+++|+.|+++++ .++.++.+.   +..+++|++|+++++. ++.+ +...+..+++|+.|++.+
T Consensus        54 ~~l~~L~~L~Ls~N-~l~~i~~~~---~~~l~~L~~L~L~~N~-l~~l-~~~~~~~l~~L~~L~L~~  114 (174)
T 2r9u_A           54 DHLVNLQQLYFNSN-KLTAIPTGV---FDKLTQLTQLDLNDNH-LKSI-PRGAFDNLKSLTHIYLYN  114 (174)
T ss_dssp             TTCTTCCEEECCSS-CCCCCCTTT---TTTCTTCCEEECCSSC-CCCC-CTTTTTTCTTCSEEECCS
T ss_pred             cCCcCCCEEECCCC-CCCccChhH---hCCcchhhEEECCCCc-ccee-CHHHhccccCCCEEEeCC
Confidence            34445555555542 344333222   2345566666665543 2232 444455566666666655

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=97.97  E-value=1.7e-05  Score=62.11  Aligned_cols=61  Identities=21%  Similarity=0.288  Sum_probs=30.2

Q ss_pred             ccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecC
Q 037794          122 IGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRN  188 (293)
Q Consensus       122 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~  188 (293)
                      ..+++|+.|+++++ .++.++.+.   +..+++|++|+++++. ++.+ +...+..+++|+.|++.+
T Consensus        51 ~~l~~L~~L~Ls~N-~l~~l~~~~---f~~l~~L~~L~L~~N~-l~~~-~~~~~~~l~~L~~L~L~~  111 (170)
T 3g39_A           51 DRLTQLTRLDLDNN-QLTVLPAGV---FDKLTQLTQLSLNDNQ-LKSI-PRGAFDNLKSLTHIWLLN  111 (170)
T ss_dssp             TTCTTCSEEECCSS-CCCCCCTTT---TTTCTTCCEEECCSSC-CCCC-CTTTTTTCTTCCEEECCS
T ss_pred             cCcccCCEEECCCC-CcCccChhh---ccCCCCCCEEECCCCc-cCEe-CHHHhcCCCCCCEEEeCC
Confidence            34445555555542 244333222   3345666666665553 3332 444455566666666665

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=97.70  E-value=9.2e-05  Score=64.60  Aligned_cols=93  Identities=13%  Similarity=0.118  Sum_probs=67.0

Q ss_pred             hhhhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCccccc
Q 037794          114 IQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLE  193 (293)
Q Consensus       114 ~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~  193 (293)
                      +..++. +..+++|+.|++++.+.+..++.+.   +..+++|++|+++++. +..+ +...+.++++|+.|++.+ +.++
T Consensus        21 l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~---~~~l~~L~~L~l~~N~-l~~~-~~~~~~~l~~L~~L~l~~-N~l~   93 (347)
T 2ifg_A           21 LDSLHH-LPGAENLTELYIENQQHLQHLELRD---LRGLGELRNLTIVKSG-LRFV-APDAFHFTPRLSRLNLSF-NALE   93 (347)
T ss_dssp             CTTTTT-SCSCSCCSEEECCSCSSCCEECGGG---SCSCCCCSEEECCSSC-CCEE-CTTGGGSCSCCCEEECCS-SCCS
T ss_pred             CCccCC-CCCCCCeeEEEccCCCCCCCcChhH---hccccCCCEEECCCCc-ccee-CHHHhcCCcCCCEEeCCC-Cccc
Confidence            455666 7788899999998766788777655   5678899999998885 5554 555588899999999998 5666


Q ss_pred             ccccccccccccccCCCCCCcccEEecCCC
Q 037794          194 EVLHLEELNADKEHIGPLFPRLFILRLIDL  223 (293)
Q Consensus       194 ~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~  223 (293)
                      .++.  +...       . .+|+.|.+.+.
T Consensus        94 ~~~~--~~~~-------~-~~L~~l~l~~N  113 (347)
T 2ifg_A           94 SLSW--KTVQ-------G-LSLQELVLSGN  113 (347)
T ss_dssp             CCCS--TTTC-------S-CCCCEEECCSS
T ss_pred             eeCH--HHcc-------c-CCceEEEeeCC
Confidence            6652  1111       2 23888888773

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.69  E-value=8.5e-06  Score=72.30  Aligned_cols=37  Identities=16%  Similarity=0.019  Sum_probs=17.1

Q ss_pred             CCCccEEEeccCCCCCccC---ChhHHhccCCCCeEEecCc
Q 037794          152 FNNLFKLVVDDCANMSSAI---PANLLRCLSNLRWLEVRNC  189 (293)
Q Consensus       152 l~~L~~L~i~~c~~l~~~~---p~~~~~~l~~L~~L~i~~c  189 (293)
                      .++|++|++++|. +.+..   ....+...++|++|++++|
T Consensus       182 ~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N  221 (372)
T 3un9_A          182 NTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYN  221 (372)
T ss_dssp             CSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSS
T ss_pred             CCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCC
Confidence            3556666665554 22110   0112344455666666653

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.68  E-value=0.0024  Score=56.71  Aligned_cols=31  Identities=10%  Similarity=0.112  Sum_probs=16.0

Q ss_pred             CcccEEecCCCCCCceeccCCCccccCCCcceEee
Q 037794          213 PRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTI  247 (293)
Q Consensus       213 ~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i  247 (293)
                      .+|+++.+-+  +++.+..  ..+..+.+|+++.|
T Consensus       311 ~~L~~i~lp~--~v~~I~~--~aF~~C~~L~~i~i  341 (394)
T 4gt6_A          311 ISLKSIDIPE--GITQILD--DAFAGCEQLERIAI  341 (394)
T ss_dssp             TTCCEEECCT--TCCEECT--TTTTTCTTCCEEEE
T ss_pred             CCcCEEEeCC--cccEehH--hHhhCCCCCCEEEE
Confidence            4556665542  4555543  44445555555554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=97.67  E-value=0.0001  Score=64.36  Aligned_cols=37  Identities=8%  Similarity=0.254  Sum_probs=20.9

Q ss_pred             ccCCCcceEeEcCCCCccccc-cCccCCCCeeEEEecc
Q 037794           60 LEFPSLERVFVTRCPNMKTFS-QGIVSTPKLHEVQVSK   96 (293)
Q Consensus        60 ~~~~~L~~L~i~~c~~l~~lp-~~~~~~~~L~~L~l~~   96 (293)
                      ..+++|+.|+++++..++.+| ..+..+++|+.|++++
T Consensus        28 ~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~   65 (347)
T 2ifg_A           28 PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK   65 (347)
T ss_dssp             CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCS
T ss_pred             CCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCC
Confidence            345566666666544555554 2345566666666654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.45  E-value=0.0053  Score=54.43  Aligned_cols=104  Identities=8%  Similarity=0.181  Sum_probs=62.0

Q ss_pred             cCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccc
Q 037794          123 GFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELN  202 (293)
Q Consensus       123 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~  202 (293)
                      .+..|+.+.+.+  .+..+..++   +....+|+.+.+.  ..++.+ +..++.++.+|+.+.+..  .++.|.. ....
T Consensus       263 ~c~~L~~i~lp~--~~~~I~~~a---F~~c~~L~~i~l~--~~i~~I-~~~aF~~c~~L~~i~lp~--~v~~I~~-~aF~  331 (394)
T 4gt6_A          263 SCAYLASVKMPD--SVVSIGTGA---FMNCPALQDIEFS--SRITEL-PESVFAGCISLKSIDIPE--GITQILD-DAFA  331 (394)
T ss_dssp             TCSSCCEEECCT--TCCEECTTT---TTTCTTCCEEECC--TTCCEE-CTTTTTTCTTCCEEECCT--TCCEECT-TTTT
T ss_pred             ecccccEEeccc--ccceecCcc---cccccccccccCC--Cccccc-CceeecCCCCcCEEEeCC--cccEehH-hHhh
Confidence            345555555543  133344333   4455677777774  234443 666788888888888863  3555542 2222


Q ss_pred             cccccCCCCCCcccEEecCCCCCCceeccCCCccccCCCcceEeeec
Q 037794          203 ADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIEN  249 (293)
Q Consensus       203 ~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~  249 (293)
                      .       + .+|+++.+-+  +++.+..  ..+..+++|+.+++.+
T Consensus       332 ~-------C-~~L~~i~ip~--sv~~I~~--~aF~~C~~L~~i~~~~  366 (394)
T 4gt6_A          332 G-------C-EQLERIAIPS--SVTKIPE--SAFSNCTALNNIEYSG  366 (394)
T ss_dssp             T-------C-TTCCEEEECT--TCCBCCG--GGGTTCTTCCEEEESS
T ss_pred             C-------C-CCCCEEEECc--ccCEEhH--hHhhCCCCCCEEEECC
Confidence            2       3 7888888853  5667655  5666777788777654

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.35  E-value=1.6e-05  Score=70.50  Aligned_cols=168  Identities=14%  Similarity=0.052  Sum_probs=100.2

Q ss_pred             cCCCcceEeEcCCCCccc-----cccCcc-CCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecC
Q 037794           61 EFPSLERVFVTRCPNMKT-----FSQGIV-STPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSH  134 (293)
Q Consensus        61 ~~~~L~~L~i~~c~~l~~-----lp~~~~-~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~  134 (293)
                      -.++|+.|++++|. ++.     +...+. ..++|+.|++++|. ..     .    .....+.   ..+++|+.|++++
T Consensus        70 ~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-l~-----~----~~~~~l~---~~L~~L~~L~Ls~  135 (372)
T 3un9_A           70 VLSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQ-LD-----P----AGLRTLL---PVFLRARKLGLQL  135 (372)
T ss_dssp             HHTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCC-CC-----H----HHHHHTH---HHHHTEEEEECCS
T ss_pred             HHhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCCC-CC-----H----HHHHHHH---HHHHhccHhhcCC
Confidence            45789999999985 442     222222 34789999999871 00     0    1111222   2345899999999


Q ss_pred             CCCceEeccCCCCC--c-ccCCCccEEEeccCCCCCccC---ChhHHhccCCCCeEEecCccccccccc---cccccccc
Q 037794          135 FPRLKEIWHGQALP--V-SFFNNLFKLVVDDCANMSSAI---PANLLRCLSNLRWLEVRNCDSLEEVLH---LEELNADK  205 (293)
Q Consensus       135 ~~~l~~~~~~~~~~--~-~~l~~L~~L~i~~c~~l~~~~---p~~~~~~l~~L~~L~i~~c~~l~~i~~---~~~~~~~~  205 (293)
                      +. ++...... +.  + ...++|++|++++|. +.+..   ....+...++|++|++++|. +.+...   .+.+..  
T Consensus       136 n~-l~~~~~~~-L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~--  209 (372)
T 3un9_A          136 NS-LGPEACKD-LRDLLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDR--  209 (372)
T ss_dssp             SC-CCHHHHHH-HHHHHHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGG--
T ss_pred             CC-CCHHHHHH-HHHHHHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhc--
Confidence            74 54332211 10  1 234789999999996 33210   11234678999999999964 544211   011111  


Q ss_pred             ccCCCCCCcccEEecCCCCCCceecc--CCCccccCCCcceEeeecCCCcccc
Q 037794          206 EHIGPLFPRLFILRLIDLPKLKRFCN--FTGNIIEMPMLWSLTIENCPDMETF  256 (293)
Q Consensus       206 ~~~~~~f~~L~~L~l~~~~~l~~~~~--~~~~~~~l~~L~~L~i~~C~~L~~l  256 (293)
                           . ++|++|+++++ .+++...  ....+...++|++|++++| .++..
T Consensus       210 -----~-~~L~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N-~i~~~  254 (372)
T 3un9_A          210 -----N-RQLQELNVAYN-GAGDTAALALARAAREHPSLELLHLYFN-ELSSE  254 (372)
T ss_dssp             -----C-SCCCEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTTS-SCCHH
T ss_pred             -----C-CCcCeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccCC-CCCHH
Confidence                 3 78999999997 4654321  0023446789999999998 46544

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.35  E-value=0.013  Score=51.53  Aligned_cols=51  Identities=16%  Similarity=0.272  Sum_probs=28.5

Q ss_pred             CcccEEecCCCCCCceeccCCCccccCCCcceEee------------ecCCCcccc-ccccchhhcc
Q 037794          213 PRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTI------------ENCPDMETF-ISNSVLHVTT  266 (293)
Q Consensus       213 ~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i------------~~C~~L~~l-~p~~l~~l~~  266 (293)
                      ++|+++.+.+ ..++.+..  ..+..+.+|+.+.+            .+|.+|+.+ +|.++..+..
T Consensus       286 ~~L~~i~l~~-~~i~~I~~--~aF~~c~~L~~i~lp~~l~~I~~~aF~~C~~L~~i~ip~~v~~I~~  349 (379)
T 4h09_A          286 SNLTKVVMDN-SAIETLEP--RVFMDCVKLSSVTLPTALKTIQVYAFKNCKALSTISYPKSITLIES  349 (379)
T ss_dssp             TTCCEEEECC-TTCCEECT--TTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCCCCCCTTCCEECT
T ss_pred             cccccccccc-cccceehh--hhhcCCCCCCEEEcCccccEEHHHHhhCCCCCCEEEECCccCEEch
Confidence            5566666543 23445543  44455555555554            357777776 6776665544

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.34  E-value=0.0052  Score=54.45  Aligned_cols=30  Identities=10%  Similarity=0.182  Sum_probs=17.6

Q ss_pred             ecCCCcccc-ccccchhhcc-CCCCCcccccc
Q 037794          248 ENCPDMETF-ISNSVLHVTT-DNKEPQKLTSE  277 (293)
Q Consensus       248 ~~C~~L~~l-~p~~l~~l~~-~~~~~~~l~~~  277 (293)
                      ++|.+|+.+ +|.++..+.. --.+|.+|+.+
T Consensus       340 ~~c~~L~~i~lp~~l~~I~~~aF~~C~~L~~i  371 (394)
T 4fs7_A          340 RGCTSLSNINFPLSLRKIGANAFQGCINLKKV  371 (394)
T ss_dssp             TTCTTCCEECCCTTCCEECTTTBTTCTTCCEE
T ss_pred             cCCCCCCEEEECccccEehHHHhhCCCCCCEE
Confidence            356666665 5666665554 24456666655

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.16  E-value=0.042  Score=48.11  Aligned_cols=61  Identities=13%  Similarity=0.138  Sum_probs=38.9

Q ss_pred             CcccEEecCCCCCCceeccCCCccccCCCcceEee-------------ecCCCcccc-ccccchhhcc-CCCCCcccccc
Q 037794          213 PRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTI-------------ENCPDMETF-ISNSVLHVTT-DNKEPQKLTSE  277 (293)
Q Consensus       213 ~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i-------------~~C~~L~~l-~p~~l~~l~~-~~~~~~~l~~~  277 (293)
                      .+|+.+.+..  +++.+..  ..+..+++|+++.+             .+|.+|+++ +|.+++.+.. --.+|.+|+++
T Consensus       263 ~~l~~i~l~~--~i~~i~~--~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~C~~L~~i  338 (379)
T 4h09_A          263 TALKTLNFYA--KVKTVPY--LLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTALKTIQVYAFKNCKALSTI  338 (379)
T ss_dssp             TTCCEEEECC--CCSEECT--TTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCCC
T ss_pred             ehhccccccc--cceeccc--cccccccccccccccccccceehhhhhcCCCCCCEEEcCccccEEHHHHhhCCCCCCEE
Confidence            5677776643  4555544  44556677776655             358888887 7888777765 24456666655

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=96.09  E-value=0.0047  Score=48.75  Aligned_cols=117  Identities=11%  Similarity=0.080  Sum_probs=59.6

Q ss_pred             cCCCcceEeEcCCCCcc-----ccccCccCCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCC
Q 037794           61 EFPSLERVFVTRCPNMK-----TFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHF  135 (293)
Q Consensus        61 ~~~~L~~L~i~~c~~l~-----~lp~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~  135 (293)
                      ..++|++|++++|..+.     .+...+...++|+.|++++|.-..          .....+...+...++|++|+++++
T Consensus        34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~----------~g~~~l~~~L~~n~~L~~L~L~~N  103 (185)
T 1io0_A           34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSND----------PVAFALAEMLKVNNTLKSLNVESN  103 (185)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCH----------HHHHHHHHHHHHCSSCCEEECCSS
T ss_pred             cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCCh----------HHHHHHHHHHHhCCCcCEEECcCC
Confidence            56777788887764444     233344556778888777661000          112233344455677777777775


Q ss_pred             CCceEeccCCC-CCcccCCCccEEEe--ccCCCCCccC---ChhHHhccCCCCeEEecCc
Q 037794          136 PRLKEIWHGQA-LPVSFFNNLFKLVV--DDCANMSSAI---PANLLRCLSNLRWLEVRNC  189 (293)
Q Consensus       136 ~~l~~~~~~~~-~~~~~l~~L~~L~i--~~c~~l~~~~---p~~~~~~l~~L~~L~i~~c  189 (293)
                      . +++...... -.....++|++|++  +++. +.+-.   ....+...++|++|++.++
T Consensus       104 ~-i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~n  161 (185)
T 1io0_A          104 F-ISGSGILALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYHFT  161 (185)
T ss_dssp             C-CCHHHHHHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             c-CCHHHHHHHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence            3 333211100 01223356777777  4443 22210   1123444567777777664

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=94.60  E-value=0.019  Score=45.19  Aligned_cols=118  Identities=10%  Similarity=0.036  Sum_probs=73.0

Q ss_pred             cccccceeecccccccccccc---ccccccCCCcceEeEcCCCCcc-----ccccCccCCCCeeEEEecccccccccccc
Q 037794           35 AFNELKFLELDDLPRLTSFCL---ENYTLEFPSLERVFVTRCPNMK-----TFSQGIVSTPKLHEVQVSKKEEDELHHWE  106 (293)
Q Consensus        35 ~~~~L~~L~l~~~~~l~~~~~---~~~~~~~~~L~~L~i~~c~~l~-----~lp~~~~~~~~L~~L~l~~c~~~~~~~~~  106 (293)
                      ..+.|++|+++++..+.....   .......++|++|++++|. +.     .+...+...++|+.|++++|.-.      
T Consensus        34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~------  106 (185)
T 1io0_A           34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNFIS------  106 (185)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSCCC------
T ss_pred             cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCCcCC------
Confidence            478899999988744443221   1123356889999999874 43     23344456688999999876100      


Q ss_pred             CccchhhhhhhhhhhccCCCccEEEe--cCCCCceEeccCCC-CCcccCCCccEEEeccCC
Q 037794          107 GNKLNSTIQKRYEEMIGFRDIERLQL--SHFPRLKEIWHGQA-LPVSFFNNLFKLVVDDCA  164 (293)
Q Consensus       107 ~~~~~~~~~~l~~~~~~~~~L~~L~l--~~~~~l~~~~~~~~-~~~~~l~~L~~L~i~~c~  164 (293)
                          ......+...+...++|++|++  ++ ..++....... ..+...++|++|++++|.
T Consensus       107 ----~~g~~~l~~~L~~n~~L~~L~L~~~~-N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          107 ----GSGILALVEALQSNTSLIELRIDNQS-QPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             ----HHHHHHHHHGGGGCSSCCEEECCCCS-SCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             ----HHHHHHHHHHHHhCCCceEEEecCCC-CCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence                0123345566677889999999  54 44665432110 002234789999998875

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=94.59  E-value=0.039  Score=46.21  Aligned_cols=41  Identities=15%  Similarity=0.293  Sum_probs=20.4

Q ss_pred             CCCccEEEeccCCCCC--ccCChhHHhccCCCCeEEecCccccccc
Q 037794          152 FNNLFKLVVDDCANMS--SAIPANLLRCLSNLRWLEVRNCDSLEEV  195 (293)
Q Consensus       152 l~~L~~L~i~~c~~l~--~~~p~~~~~~l~~L~~L~i~~c~~l~~i  195 (293)
                      +++|+.|+++++....  . ++ ..+..+++|+.|++++ +.+..+
T Consensus       169 l~~L~~L~Ls~N~l~~l~~-l~-~~~~~l~~L~~L~Ls~-N~i~~~  211 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDD-MS-SIVQKAPNLKILNLSG-NELKSE  211 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGG-GT-THHHHSTTCCEEECTT-SCCCSG
T ss_pred             CCCCCEEECCCCCCCCCcc-ch-hHHhhCCCCCEEECCC-CccCCc
Confidence            4566666665554222  1 11 2244566666666665 444443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=93.66  E-value=0.054  Score=45.35  Aligned_cols=65  Identities=20%  Similarity=0.210  Sum_probs=44.9

Q ss_pred             hccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceeccCCCccccCC--CcceEeeecCCCc
Q 037794          176 RCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMP--MLWSLTIENCPDM  253 (293)
Q Consensus       176 ~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~--~L~~L~i~~C~~L  253 (293)
                      ..+++|+.|++++ +.++.+........       .+++|+.|+|++ ..++++    ..+..+.  +|++|.++++| +
T Consensus       167 ~~l~~L~~L~Ls~-N~l~~l~~l~~~~~-------~l~~L~~L~Ls~-N~i~~~----~~l~~l~~l~L~~L~L~~Np-l  232 (267)
T 3rw6_A          167 ENIPELLSLNLSN-NRLYRLDDMSSIVQ-------KAPNLKILNLSG-NELKSE----RELDKIKGLKLEELWLDGNS-L  232 (267)
T ss_dssp             HHCTTCCEEECTT-SCCCCCGGGTTHHH-------HSTTCCEEECTT-SCCCSG----GGGGGGTTSCCSEEECTTST-T
T ss_pred             hhCCCCCEEECCC-CCCCCCccchhHHh-------hCCCCCEEECCC-CccCCc----hhhhhcccCCcceEEccCCc-C
Confidence            5689999999999 56666543221111       249999999988 467665    2333334  89999999986 5


Q ss_pred             c
Q 037794          254 E  254 (293)
Q Consensus       254 ~  254 (293)
                      .
T Consensus       233 ~  233 (267)
T 3rw6_A          233 C  233 (267)
T ss_dssp             G
T ss_pred             c
Confidence            4

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=84.28  E-value=1.3  Score=32.30  Aligned_cols=34  Identities=18%  Similarity=0.149  Sum_probs=17.5

Q ss_pred             CcccEEecCCCCCCceeccCCCccccCCCcceEeeec
Q 037794          213 PRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIEN  249 (293)
Q Consensus       213 ~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~  249 (293)
                      ++|++|+|++ +.|+.++.  ..+..+++|+.|++.+
T Consensus        31 ~~l~~L~Ls~-N~l~~l~~--~~f~~l~~L~~L~L~~   64 (130)
T 3rfe_A           31 VDTTELVLTG-NNLTALPP--GLLDALPALRTAHLGA   64 (130)
T ss_dssp             TTCSEEECTT-SCCSSCCT--TTGGGCTTCCEEECCS
T ss_pred             cCCCEEECCC-CcCCccCh--hhhhhccccCEEEecC
Confidence            3555555555 34555443  3444555555555554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	293
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.58
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.58
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.42
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.4
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.4
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.4
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.38
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.33
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.26
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.23
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.22
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.21
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.18
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.16
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.14
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.14
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.12
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.12
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.1
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.07
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.02
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.95
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.72
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.45
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.43
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.43
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.41
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.38
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.12
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.1
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.07
d2ifga3	156	High affinity nerve growth factor receptor, N-term	97.86
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.62
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	96.86
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	95.81
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	95.61
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	95.07
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	94.07
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	93.44
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	92.94
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	92.89
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	90.73

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=5.8e-16  Score=131.24  Aligned_cols=190  Identities=14%  Similarity=0.078  Sum_probs=108.2

Q ss_pred             ccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccCccCCCCeeEEEeccccccccccccCccchhhhh
Q 037794           36 FNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQ  115 (293)
Q Consensus        36 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~  115 (293)
                      ..+|++|++++|. +..-.......++++|++|.+.+|+--...+..+.++++|+.|++++|...            ...
T Consensus        45 ~~~L~~LdLs~~~-i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~i------------td~  111 (284)
T d2astb2          45 PFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGF------------SEF  111 (284)
T ss_dssp             CBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSC------------CHH
T ss_pred             CCCCCEEECCCCc-cCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccc------------ccc
Confidence            4567777777663 222111112346778888888877432233344556777888888777111            011


Q ss_pred             hhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCC-CCCccCChhHHhccCCCCeEEecCcccccc
Q 037794          116 KRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCA-NMSSAIPANLLRCLSNLRWLEVRNCDSLEE  194 (293)
Q Consensus       116 ~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~-~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~  194 (293)
                      .+......+++|++|++++|..+++..... ......++|++|++++|. .+.+......+..+++|++|++.+|..+++
T Consensus       112 ~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd  190 (284)
T d2astb2         112 ALQTLLSSCSRLDELNLSWCFDFTEKHVQV-AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKN  190 (284)
T ss_dssp             HHHHHHHHCTTCCEEECCCCTTCCHHHHHH-HHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCG
T ss_pred             ccchhhHHHHhccccccccccccccccchh-hhcccccccchhhhcccccccccccccccccccccccccccccccCCCc
Confidence            222223456778888888777665322111 001123678888887764 333322233456677888888887776654


Q ss_pred             cccccccccccccCCCCCCcccEEecCCCCCCceeccCCCccccCCCcceEeeecC
Q 037794          195 VLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENC  250 (293)
Q Consensus       195 i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C  250 (293)
                      -.. ..+..       . ++|++|.+.+|.++++-..  ..+..+|+|++|++++|
T Consensus       191 ~~~-~~l~~-------~-~~L~~L~L~~C~~i~~~~l--~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         191 DCF-QEFFQ-------L-NYLQHLSLSRCYDIIPETL--LELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GGG-GGGGG-------C-TTCCEEECTTCTTCCGGGG--GGGGGCTTCCEEECTTS
T ss_pred             hhh-hhhcc-------c-CcCCEEECCCCCCCChHHH--HHHhcCCCCCEEeeeCC
Confidence            321 11111       3 7788888888877765332  34566778888888777

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=8.5e-16  Score=130.16  Aligned_cols=224  Identities=18%  Similarity=0.176  Sum_probs=142.3

Q ss_pred             CCCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccc--cc
Q 037794            3 IPNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKT--FS   80 (293)
Q Consensus         3 ~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~--lp   80 (293)
                      ...+|++|++++|..-.......       ...+++|++|.+++|. +.+.... ....+++|++|++++|.+++.  +.
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l-------~~~c~~L~~L~L~~~~-l~~~~~~-~l~~~~~L~~L~Ls~c~~itd~~l~  114 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGI-------LSQCSKLQNLSLEGLR-LSDPIVN-TLAKNSNLVRLNLSGCSGFSEFALQ  114 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHH-------HTTBCCCSEEECTTCB-CCHHHHH-HHTTCTTCSEEECTTCBSCCHHHHH
T ss_pred             cCCCCCEEECCCCccCHHHHHHH-------HHhCCCcccccccccC-CCcHHHH-HHhcCCCCcCccccccccccccccc
Confidence            45679999999884322211111       1238999999999985 3322221 144789999999999998873  33


Q ss_pred             cCccCCCCeeEEEeccccccccccccCccchhhhhhhhhh-hccCCCccEEEecCCC-CceEeccCCCCCcccCCCccEE
Q 037794           81 QGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEE-MIGFRDIERLQLSHFP-RLKEIWHGQALPVSFFNNLFKL  158 (293)
Q Consensus        81 ~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~L~~L~l~~~~-~l~~~~~~~~~~~~~l~~L~~L  158 (293)
                      .....+++|+.|++++|....            ...+... ....++|+.|.+++|. .+++..... + ...+++|++|
T Consensus       115 ~l~~~~~~L~~L~ls~c~~~~------------~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~-l-~~~~~~L~~L  180 (284)
T d2astb2         115 TLLSSCSRLDELNLSWCFDFT------------EKHVQVAVAHVSETITQLNLSGYRKNLQKSDLST-L-VRRCPNLVHL  180 (284)
T ss_dssp             HHHHHCTTCCEEECCCCTTCC------------HHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHH-H-HHHCTTCSEE
T ss_pred             hhhHHHHhccccccccccccc------------cccchhhhcccccccchhhhcccccccccccccc-c-cccccccccc
Confidence            344678999999999982211            1112111 1346799999999874 333222111 0 2346899999


Q ss_pred             EeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceeccCCCcccc
Q 037794          159 VVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIE  238 (293)
Q Consensus       159 ~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~  238 (293)
                      ++++|..+++.... .+.++++|++|++.+|..+++-.- ..+..       . |+|++|++.+|-.-..+.   .-...
T Consensus       181 ~L~~~~~itd~~~~-~l~~~~~L~~L~L~~C~~i~~~~l-~~L~~-------~-~~L~~L~l~~~~~d~~l~---~l~~~  247 (284)
T d2astb2         181 DLSDSVMLKNDCFQ-EFFQLNYLQHLSLSRCYDIIPETL-LELGE-------I-PTLKTLQVFGIVPDGTLQ---LLKEA  247 (284)
T ss_dssp             ECTTCTTCCGGGGG-GGGGCTTCCEEECTTCTTCCGGGG-GGGGG-------C-TTCCEEECTTSSCTTCHH---HHHHH
T ss_pred             ccccccCCCchhhh-hhcccCcCCEEECCCCCCCChHHH-HHHhc-------C-CCCCEEeeeCCCCHHHHH---HHHHh
Confidence            99999988865333 467799999999999998865321 12222       3 999999999983222221   11134


Q ss_pred             CCCcceEeeecCCCccccccccchhhcc
Q 037794          239 MPMLWSLTIENCPDMETFISNSVLHVTT  266 (293)
Q Consensus       239 l~~L~~L~i~~C~~L~~l~p~~l~~l~~  266 (293)
                      +|+|+   + +|.+++.+.++.++.-..
T Consensus       248 lp~L~---i-~~~~ls~~~~~~~~~~~~  271 (284)
T d2astb2         248 LPHLQ---I-NCSHFTTIARPTIGNKKN  271 (284)
T ss_dssp             STTSE---E-SCCCSCCTTCSSCSSTTC
T ss_pred             Ccccc---c-cCccCCCCCCCccCcccc
Confidence            55554   4 577887775556555443

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.9e-12  Score=107.97  Aligned_cols=207  Identities=17%  Similarity=0.188  Sum_probs=142.8

Q ss_pred             CcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccCccC
Q 037794            6 SLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGIVS   85 (293)
Q Consensus         6 ~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~   85 (293)
                      .+.+++-++ .+++.+|...          .+++++|++++. .+.+++.. ...++++|++|+++++ +++.+|. ...
T Consensus        11 ~~~~v~C~~-~~L~~iP~~l----------p~~l~~L~Ls~N-~i~~l~~~-~f~~l~~L~~L~L~~N-~l~~l~~-~~~   75 (266)
T d1p9ag_          11 SHLEVNCDK-RNLTALPPDL----------PKDTTILHLSEN-LLYTFSLA-TLMPYTRLTQLNLDRA-ELTKLQV-DGT   75 (266)
T ss_dssp             TCCEEECTT-SCCSSCCSCC----------CTTCCEEECTTS-CCSEEEGG-GGTTCTTCCEEECTTS-CCCEEEC-CSC
T ss_pred             CCeEEEccC-CCCCeeCcCc----------CcCCCEEECcCC-cCCCcCHH-Hhhccccccccccccc-ccccccc-ccc
Confidence            334444333 3577777542          357999999886 45566543 2457899999999986 6787764 367


Q ss_pred             CCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCC
Q 037794           86 TPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCAN  165 (293)
Q Consensus        86 ~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~  165 (293)
                      +++|+.|+++++               .+......+..+++|+.|+++++. +..++...   ...+.++++|++.++. 
T Consensus        76 l~~L~~L~Ls~N---------------~l~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~---~~~l~~l~~L~l~~n~-  135 (266)
T d1p9ag_          76 LPVLGTLDLSHN---------------QLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGA---LRGLGELQELYLKGNE-  135 (266)
T ss_dssp             CTTCCEEECCSS---------------CCSSCCCCTTTCTTCCEEECCSSC-CCCCCSST---TTTCTTCCEEECTTSC-
T ss_pred             cccccccccccc---------------cccccccccccccccccccccccc-cceeeccc---cccccccccccccccc-
Confidence            899999999875               112223344678899999998865 44444333   4567899999998875 


Q ss_pred             CCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceeccCCCccccCCCcceE
Q 037794          166 MSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSL  245 (293)
Q Consensus       166 l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L  245 (293)
                      +..+ +...+..+++|+.+++.+ .+++.++. +.+.        .+++|++|++++. .+++++   ..+..+++|+.|
T Consensus       136 l~~l-~~~~~~~l~~l~~l~l~~-N~l~~~~~-~~~~--------~l~~L~~L~Ls~N-~L~~lp---~~~~~~~~L~~L  200 (266)
T d1p9ag_         136 LKTL-PPGLLTPTPKLEKLSLAN-NNLTELPA-GLLN--------GLENLDTLLLQEN-SLYTIP---KGFFGSHLLPFA  200 (266)
T ss_dssp             CCCC-CTTTTTTCTTCCEEECTT-SCCSCCCT-TTTT--------TCTTCCEEECCSS-CCCCCC---TTTTTTCCCSEE
T ss_pred             ccee-ccccccccccchhccccc-ccccccCc-cccc--------cccccceeecccC-CCcccC---hhHCCCCCCCEE
Confidence            4443 666688899999999999 45666542 1122        2489999999985 588876   566788999999


Q ss_pred             eeecCC-----Cccccccccchh
Q 037794          246 TIENCP-----DMETFISNSVLH  263 (293)
Q Consensus       246 ~i~~C~-----~L~~l~p~~l~~  263 (293)
                      ++++.|     ++..+ +.++..
T Consensus       201 ~L~~Np~~CdC~~~~l-~~wl~~  222 (266)
T d1p9ag_         201 FLHGNPWLCNCEILYF-RRWLQD  222 (266)
T ss_dssp             ECCSCCBCCSGGGHHH-HHHHHH
T ss_pred             EecCCCCCCCcchHHH-HHHHHh
Confidence            998743     34444 555543

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.40  E-value=6.5e-13  Score=113.42  Aligned_cols=207  Identities=12%  Similarity=0.081  Sum_probs=113.8

Q ss_pred             CcceEeccccccc--eEeccccccccccccccccccceeecccccccc-ccccccccccCCCcceEeEcCCCCccccccC
Q 037794            6 SLVNLNVSYCEKI--EEIIGHVGEEAKENRIAFNELKFLELDDLPRLT-SFCLENYTLEFPSLERVFVTRCPNMKTFSQG   82 (293)
Q Consensus         6 ~L~~L~l~~c~~l--~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~   82 (293)
                      .+++|+++++..-  ..+|...+.        +++|++|+++++.++. .+|..  +.++++|++|+++++......+..
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~--------L~~L~~L~Ls~~N~l~g~iP~~--i~~L~~L~~L~Ls~N~l~~~~~~~  120 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLAN--------LPYLNFLYIGGINNLVGPIPPA--IAKLTQLHYLYITHTNVSGAIPDF  120 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGG--------CTTCSEEEEEEETTEESCCCGG--GGGCTTCSEEEEEEECCEEECCGG
T ss_pred             EEEEEECCCCCCCCCCCCChHHhc--------Cccccccccccccccccccccc--cccccccchhhhcccccccccccc
Confidence            4677777775222  244443333        7888888887765554 45544  557788888888776443344445


Q ss_pred             ccCCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCc-cE----
Q 037794           83 IVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNL-FK----  157 (293)
Q Consensus        83 ~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L-~~----  157 (293)
                      ...+++|+.+.+..+              .....++..+..+++++.++++++.....++..    +..+..+ +.    
T Consensus       121 ~~~~~~L~~l~l~~N--------------~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~----~~~l~~l~~~l~~~  182 (313)
T d1ogqa_         121 LSQIKTLVTLDFSYN--------------ALSGTLPPSISSLPNLVGITFDGNRISGAIPDS----YGSFSKLFTSMTIS  182 (313)
T ss_dssp             GGGCTTCCEEECCSS--------------EEESCCCGGGGGCTTCCEEECCSSCCEEECCGG----GGCCCTTCCEEECC
T ss_pred             ccchhhhcccccccc--------------cccccCchhhccCcccceeeccccccccccccc----cccccccccccccc
Confidence            566777777777654              222223334455666666666654322222211    1122222 33    


Q ss_pred             -------------------EEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEE
Q 037794          158 -------------------LVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFIL  218 (293)
Q Consensus       158 -------------------L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L  218 (293)
                                         +++.++..... .| .....+++|+.+++.++..-..++.   +        ..+++|+.|
T Consensus       183 ~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~-~~-~~~~~~~~l~~l~~~~~~l~~~~~~---~--------~~~~~L~~L  249 (313)
T d1ogqa_         183 RNRLTGKIPPTFANLNLAFVDLSRNMLEGD-AS-VLFGSDKNTQKIHLAKNSLAFDLGK---V--------GLSKNLNGL  249 (313)
T ss_dssp             SSEEEEECCGGGGGCCCSEEECCSSEEEEC-CG-GGCCTTSCCSEEECCSSEECCBGGG---C--------CCCTTCCEE
T ss_pred             cccccccccccccccccccccccccccccc-cc-ccccccccccccccccccccccccc---c--------ccccccccc
Confidence                               33333322222 12 2234455666666655432111111   1        123788889


Q ss_pred             ecCCCCCCc-eeccCCCccccCCCcceEeeecCCCcc-ccccc
Q 037794          219 RLIDLPKLK-RFCNFTGNIIEMPMLWSLTIENCPDME-TFISN  259 (293)
Q Consensus       219 ~l~~~~~l~-~~~~~~~~~~~l~~L~~L~i~~C~~L~-~l~p~  259 (293)
                      +++++ +++ .++   ..+..+++|++|+++++ +|+ .+ |+
T Consensus       250 ~Ls~N-~l~g~iP---~~l~~L~~L~~L~Ls~N-~l~g~i-P~  286 (313)
T d1ogqa_         250 DLRNN-RIYGTLP---QGLTQLKFLHSLNVSFN-NLCGEI-PQ  286 (313)
T ss_dssp             ECCSS-CCEECCC---GGGGGCTTCCEEECCSS-EEEEEC-CC
T ss_pred             cCccC-eecccCC---hHHhCCCCCCEEECcCC-cccccC-CC
Confidence            98875 455 343   67888899999999987 677 45 74

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=3.7e-12  Score=107.20  Aligned_cols=219  Identities=16%  Similarity=0.166  Sum_probs=145.8

Q ss_pred             CCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccc-cC
Q 037794            4 PNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFS-QG   82 (293)
Q Consensus         4 l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp-~~   82 (293)
                      ++++++|+|+++ .++.++...-       ..+++|++|++++.. +..+... ....++.++++.+.....+..++ ..
T Consensus        31 p~~~~~L~Ls~N-~i~~i~~~~f-------~~l~~L~~L~ls~n~-l~~i~~~-~~~~~~~~~~l~~~~~~~~~~l~~~~  100 (284)
T d1ozna_          31 PAASQRIFLHGN-RISHVPAASF-------RACRNLTILWLHSNV-LARIDAA-AFTGLALLEQLDLSDNAQLRSVDPAT  100 (284)
T ss_dssp             CTTCSEEECTTS-CCCEECTTTT-------TTCTTCCEEECCSSC-CCEECTT-TTTTCTTCCEEECCSCTTCCCCCTTT
T ss_pred             CCCCCEEECcCC-cCCCCCHHHh-------hcccccccccccccc-ccccccc-cccccccccccccccccccccccchh
Confidence            457889999886 6788876431       237889999987753 3434332 23467788888887777777664 45


Q ss_pred             ccCCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEecc
Q 037794           83 IVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDD  162 (293)
Q Consensus        83 ~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~  162 (293)
                      ++.+++|+.|++.++....              --........+|+.+.+.+. .++.++.+.   +..+++|++|++++
T Consensus       101 ~~~l~~L~~L~l~~n~~~~--------------~~~~~~~~~~~L~~l~l~~N-~l~~i~~~~---f~~~~~L~~L~l~~  162 (284)
T d1ozna_         101 FHGLGRLHTLHLDRCGLQE--------------LGPGLFRGLAALQYLYLQDN-ALQALPDDT---FRDLGNLTHLFLHG  162 (284)
T ss_dssp             TTTCTTCCEEECTTSCCCC--------------CCTTTTTTCTTCCEEECCSS-CCCCCCTTT---TTTCTTCCEEECCS
T ss_pred             hcccccCCEEecCCccccc--------------ccccccchhcccchhhhccc-cccccChhH---hccccchhhccccc
Confidence            6778999999998761100              01112345778899999874 466666544   45668899999988


Q ss_pred             CCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceeccCCCccccCCCc
Q 037794          163 CANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPML  242 (293)
Q Consensus       163 c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L  242 (293)
                      +. ++.+ +...+.++++|+.+++.++ .+..+.. ..+..        +++|++|++.+. .++.+..  ..+..+++|
T Consensus       163 N~-l~~l-~~~~f~~l~~L~~l~l~~N-~l~~i~~-~~f~~--------l~~L~~L~l~~N-~i~~~~~--~~~~~~~~L  227 (284)
T d1ozna_         163 NR-ISSV-PERAFRGLHSLDRLLLHQN-RVAHVHP-HAFRD--------LGRLMTLYLFAN-NLSALPT--EALAPLRAL  227 (284)
T ss_dssp             SC-CCEE-CTTTTTTCTTCCEEECCSS-CCCEECT-TTTTT--------CTTCCEEECCSS-CCSCCCH--HHHTTCTTC
T ss_pred             Cc-cccc-chhhhccccccchhhhhhc-cccccCh-hHhhh--------hhhccccccccc-ccccccc--ccccccccc
Confidence            85 5554 5566888999999999984 4444432 22222        389999999884 5666543  567788999


Q ss_pred             ceEeeecCC-----Cccccccccchhhcc
Q 037794          243 WSLTIENCP-----DMETFISNSVLHVTT  266 (293)
Q Consensus       243 ~~L~i~~C~-----~L~~l~p~~l~~l~~  266 (293)
                      ++|++++.|     .++.+ ..++.+...
T Consensus       228 ~~L~l~~N~l~C~C~~~~l-~~~l~~~~~  255 (284)
T d1ozna_         228 QYLRLNDNPWVCDCRARPL-WAWLQKFRG  255 (284)
T ss_dssp             CEEECCSSCEECSGGGHHH-HHHHHHCCS
T ss_pred             CEEEecCCCCCCCccchHH-HHHHHhCcC
Confidence            999998721     23333 455555444

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.40  E-value=3.7e-12  Score=103.66  Aligned_cols=171  Identities=17%  Similarity=0.254  Sum_probs=89.2

Q ss_pred             ccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccCccCCCCeeEEEeccccccccccccCccchhhhh
Q 037794           36 FNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQ  115 (293)
Q Consensus        36 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~  115 (293)
                      +.+|+.|.+.++. ++++..   ..++++|++|+++++ .+..++ .+..+++|+.+.+.++.               ..
T Consensus        40 l~~L~~L~l~~~~-i~~l~~---l~~l~~L~~L~ls~n-~i~~~~-~l~~l~~l~~l~~~~n~---------------~~   98 (227)
T d1h6ua2          40 LDGITTLSAFGTG-VTTIEG---VQYLNNLIGLELKDN-QITDLA-PLKNLTKITELELSGNP---------------LK   98 (227)
T ss_dssp             HHTCCEEECTTSC-CCCCTT---GGGCTTCCEEECCSS-CCCCCG-GGTTCCSCCEEECCSCC---------------CS
T ss_pred             cCCcCEEECCCCC-CCcchh---HhcCCCCcEeecCCc-eeeccc-ccccccccccccccccc---------------cc
Confidence            5667777776653 344321   346777777777665 344332 24566677777666540               00


Q ss_pred             hhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCccccccc
Q 037794          116 KRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEV  195 (293)
Q Consensus       116 ~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i  195 (293)
                      .+ ..+..+++|+.+.++++.... +     .+....+.++.+.++++.....    ..+.++++|+.|++.++. +...
T Consensus        99 ~i-~~l~~l~~L~~l~l~~~~~~~-~-----~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~L~~L~l~~n~-~~~~  166 (227)
T d1h6ua2          99 NV-SAIAGLQSIKTLDLTSTQITD-V-----TPLAGLSNLQVLYLDLNQITNI----SPLAGLTNLQYLSIGNAQ-VSDL  166 (227)
T ss_dssp             CC-GGGTTCTTCCEEECTTSCCCC-C-----GGGTTCTTCCEEECCSSCCCCC----GGGGGCTTCCEEECCSSC-CCCC
T ss_pred             cc-ccccccccccccccccccccc-c-----chhccccchhhhhchhhhhchh----hhhccccccccccccccc-cccc
Confidence            11 122456666677666654221 1     1123345666666655543321    124556666666666542 2222


Q ss_pred             ccccccccccccCCCCCCcccEEecCCCCCCceeccCCCccccCCCcceEeeecCCCcccc
Q 037794          196 LHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETF  256 (293)
Q Consensus       196 ~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l  256 (293)
                      ..   +.        .+++|++|+++++ .++++    ..+..+++|++|++++| +++.+
T Consensus       167 ~~---l~--------~l~~L~~L~Ls~n-~l~~l----~~l~~l~~L~~L~Ls~N-~lt~i  210 (227)
T d1h6ua2         167 TP---LA--------NLSKLTTLKADDN-KISDI----SPLASLPNLIEVHLKNN-QISDV  210 (227)
T ss_dssp             GG---GT--------TCTTCCEEECCSS-CCCCC----GGGGGCTTCCEEECTTS-CCCBC
T ss_pred             hh---hc--------ccccceecccCCC-ccCCC----hhhcCCCCCCEEECcCC-cCCCC
Confidence            11   11        1366666776665 45554    33556666777777666 56666

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.38  E-value=1e-11  Score=105.42  Aligned_cols=216  Identities=19%  Similarity=0.223  Sum_probs=146.4

Q ss_pred             CCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccCc
Q 037794            4 PNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGI   83 (293)
Q Consensus         4 l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~   83 (293)
                      ++++++|+++++ +++.++...       ...+++|+.|+++++... .+... ...++++|+.|++.++ +++.+|.. 
T Consensus        30 ~~~l~~L~Ls~N-~i~~l~~~~-------f~~l~~L~~L~l~~n~~~-~i~~~-~f~~l~~L~~L~l~~n-~l~~l~~~-   97 (305)
T d1xkua_          30 PPDTALLDLQNN-KITEIKDGD-------FKNLKNLHTLILINNKIS-KISPG-AFAPLVKLERLYLSKN-QLKELPEK-   97 (305)
T ss_dssp             CTTCCEEECCSS-CCCCBCTTT-------TTTCTTCCEEECCSSCCC-CBCTT-TTTTCTTCCEEECCSS-CCSBCCSS-
T ss_pred             CCCCCEEECcCC-cCCCcChhH-------hhcccccccccccccccc-ccchh-hhhCCCccCEecccCC-ccCcCccc-
Confidence            578999999997 788888642       123899999999998654 34322 2457899999999987 57777654 


Q ss_pred             cCCCCeeEEEecccccccc--ccccCcc----------chhhhhhhhhhhccCCCccEEEecCCCCceEeccCCCCCccc
Q 037794           84 VSTPKLHEVQVSKKEEDEL--HHWEGNK----------LNSTIQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSF  151 (293)
Q Consensus        84 ~~~~~L~~L~l~~c~~~~~--~~~~~~~----------~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~  151 (293)
                       ..+.++.|......-...  ..+....          ...........+..+++|+.+.+.++. +..+      +...
T Consensus        98 -~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~-l~~l------~~~~  169 (305)
T d1xkua_          98 -MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTI------PQGL  169 (305)
T ss_dssp             -CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSC------CSSC
T ss_pred             -hhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCC-cccc------Cccc
Confidence             346778887765421110  0011110          001111122334667889999998864 3333      3445


Q ss_pred             CCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceecc
Q 037794          152 FNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCN  231 (293)
Q Consensus       152 l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~  231 (293)
                      +++|++|+++++.....  +...+.+++.++.|++.++ .++.++. ..+..        +++|++|++.++ +++.++ 
T Consensus       170 ~~~L~~L~l~~n~~~~~--~~~~~~~~~~l~~L~~s~n-~l~~~~~-~~~~~--------l~~L~~L~L~~N-~L~~lp-  235 (305)
T d1xkua_         170 PPSLTELHLDGNKITKV--DAASLKGLNNLAKLGLSFN-SISAVDN-GSLAN--------TPHLRELHLNNN-KLVKVP-  235 (305)
T ss_dssp             CTTCSEEECTTSCCCEE--CTGGGTTCTTCCEEECCSS-CCCEECT-TTGGG--------STTCCEEECCSS-CCSSCC-
T ss_pred             CCccCEEECCCCcCCCC--ChhHhhccccccccccccc-ccccccc-ccccc--------cccceeeecccc-cccccc-
Confidence            68999999998876654  3445888999999999984 5666542 22222        389999999997 687775 


Q ss_pred             CCCccccCCCcceEeeecCCCcccc
Q 037794          232 FTGNIIEMPMLWSLTIENCPDMETF  256 (293)
Q Consensus       232 ~~~~~~~l~~L~~L~i~~C~~L~~l  256 (293)
                        ..+..+++|++|+++++ +|+.+
T Consensus       236 --~~l~~l~~L~~L~Ls~N-~i~~i  257 (305)
T d1xkua_         236 --GGLADHKYIQVVYLHNN-NISAI  257 (305)
T ss_dssp             --TTTTTCSSCCEEECCSS-CCCCC
T ss_pred             --cccccccCCCEEECCCC-ccCcc
Confidence              57788999999999997 69887

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=1.3e-11  Score=102.94  Aligned_cols=176  Identities=20%  Similarity=0.202  Sum_probs=129.4

Q ss_pred             CCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccCc
Q 037794            4 PNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGI   83 (293)
Q Consensus         4 l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~   83 (293)
                      .+++++|+++++ .++.++...       ...+++|++|+++++ .++.++..   ..+++|+.|+++++ ++..++..+
T Consensus        30 p~~l~~L~Ls~N-~i~~l~~~~-------f~~l~~L~~L~L~~N-~l~~l~~~---~~l~~L~~L~Ls~N-~l~~~~~~~   96 (266)
T d1p9ag_          30 PKDTTILHLSEN-LLYTFSLAT-------LMPYTRLTQLNLDRA-ELTKLQVD---GTLPVLGTLDLSHN-QLQSLPLLG   96 (266)
T ss_dssp             CTTCCEEECTTS-CCSEEEGGG-------GTTCTTCCEEECTTS-CCCEEECC---SCCTTCCEEECCSS-CCSSCCCCT
T ss_pred             CcCCCEEECcCC-cCCCcCHHH-------hhccccccccccccc-cccccccc---cccccccccccccc-ccccccccc
Confidence            368999999996 777877543       123899999999987 46666543   36899999999986 577777788


Q ss_pred             cCCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccC
Q 037794           84 VSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDC  163 (293)
Q Consensus        84 ~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c  163 (293)
                      ..+++|+.|.++++....              ........+.+++.|.+.++ .+..++...   ...+++++.++++++
T Consensus        97 ~~l~~L~~L~l~~~~~~~--------------~~~~~~~~l~~l~~L~l~~n-~l~~l~~~~---~~~l~~l~~l~l~~N  158 (266)
T d1p9ag_          97 QTLPALTVLDVSFNRLTS--------------LPLGALRGLGELQELYLKGN-ELKTLPPGL---LTPTPKLEKLSLANN  158 (266)
T ss_dssp             TTCTTCCEEECCSSCCCC--------------CCSSTTTTCTTCCEEECTTS-CCCCCCTTT---TTTCTTCCEEECTTS
T ss_pred             ccccccccccccccccce--------------eecccccccccccccccccc-ccceecccc---ccccccchhcccccc
Confidence            889999999998761111              01122356789999999885 466665443   456789999999988


Q ss_pred             CCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCC
Q 037794          164 ANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDL  223 (293)
Q Consensus       164 ~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~  223 (293)
                      . +..+ +...+..+++|++|++++ +.++.++.  ++..        +++|+.|.+.+-
T Consensus       159 ~-l~~~-~~~~~~~l~~L~~L~Ls~-N~L~~lp~--~~~~--------~~~L~~L~L~~N  205 (266)
T d1p9ag_         159 N-LTEL-PAGLLNGLENLDTLLLQE-NSLYTIPK--GFFG--------SHLLPFAFLHGN  205 (266)
T ss_dssp             C-CSCC-CTTTTTTCTTCCEEECCS-SCCCCCCT--TTTT--------TCCCSEEECCSC
T ss_pred             c-cccc-Cccccccccccceeeccc-CCCcccCh--hHCC--------CCCCCEEEecCC
Confidence            5 4443 666688899999999999 45888763  2222        388999999863

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.26  E-value=1.2e-10  Score=101.28  Aligned_cols=220  Identities=14%  Similarity=0.150  Sum_probs=125.2

Q ss_pred             CCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccCc
Q 037794            4 PNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGI   83 (293)
Q Consensus         4 l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~   83 (293)
                      +.+|++|+++++ .++.+. +        +..+++|++|+++++ .+++++.   ..++++|++|++++|+ +..++ .+
T Consensus        43 l~~l~~L~l~~~-~I~~l~-g--------l~~L~nL~~L~Ls~N-~l~~l~~---l~~L~~L~~L~L~~n~-i~~i~-~l  106 (384)
T d2omza2          43 LDQVTTLQADRL-GIKSID-G--------VEYLNNLTQINFSNN-QLTDITP---LKNLTKLVDILMNNNQ-IADIT-PL  106 (384)
T ss_dssp             HTTCCEEECCSS-CCCCCT-T--------GGGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSSC-CCCCG-GG
T ss_pred             hCCCCEEECCCC-CCCCcc-c--------cccCCCCCEEeCcCC-cCCCCcc---ccCCcccccccccccc-ccccc-cc
Confidence            467888888886 455542 1        123889999999887 4666653   4478899999998874 44443 35


Q ss_pred             cCCCCeeEEEeccccccccccccCc----------------------------------cchhh---------------h
Q 037794           84 VSTPKLHEVQVSKKEEDELHHWEGN----------------------------------KLNST---------------I  114 (293)
Q Consensus        84 ~~~~~L~~L~l~~c~~~~~~~~~~~----------------------------------~~~~~---------------~  114 (293)
                      ..+++|+.|.+.++...........                                  .....               .
T Consensus       107 ~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (384)
T d2omza2         107 ANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK  186 (384)
T ss_dssp             TTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccc
Confidence            6788888888776531110000000                                  00000               0


Q ss_pred             hhhhh----------------------hhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCCh
Q 037794          115 QKRYE----------------------EMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPA  172 (293)
Q Consensus       115 ~~l~~----------------------~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~  172 (293)
                      .....                      ....+++|+.|.++++. ++.++     .+..+++|+.|+++++. +.++ +.
T Consensus       187 ~~~~~~~~~l~~~~~l~l~~n~i~~~~~~~~~~~L~~L~l~~n~-l~~~~-----~l~~l~~L~~L~l~~n~-l~~~-~~  258 (384)
T d2omza2         187 VSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQ-LKDIG-----TLASLTNLTDLDLANNQ-ISNL-AP  258 (384)
T ss_dssp             CCCCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSC-CCCCG-----GGGGCTTCSEEECCSSC-CCCC-GG
T ss_pred             cccccccccccccceeeccCCccCCCCcccccCCCCEEECCCCC-CCCcc-----hhhcccccchhccccCc-cCCC-Cc
Confidence            00001                      12334566666666542 33322     14466888888888875 4432 22


Q ss_pred             hHHhccCCCCeEEecCccccccccccccccc----------ccc-cCCCCCCcccEEecCCCCCCceeccCCCccccCCC
Q 037794          173 NLLRCLSNLRWLEVRNCDSLEEVLHLEELNA----------DKE-HIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPM  241 (293)
Q Consensus       173 ~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~----------~~~-~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~  241 (293)
                        +.++++|++|++.++ .+..++.......          ... .....+++++.|+++++ +++++    ..+..+++
T Consensus       259 --~~~~~~L~~L~l~~~-~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n-~l~~l----~~l~~l~~  330 (384)
T d2omza2         259 --LSGLTKLTELKLGAN-QISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFN-NISDI----SPVSSLTK  330 (384)
T ss_dssp             --GTTCTTCSEEECCSS-CCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSS-CCSCC----GGGGGCTT
T ss_pred             --ccccccCCEeeccCc-ccCCCCccccccccccccccccccccccccchhcccCeEECCCC-CCCCC----cccccCCC
Confidence              666888888888764 2333321111100          000 01122367888888775 56665    34677889


Q ss_pred             cceEeeecCCCcccc
Q 037794          242 LWSLTIENCPDMETF  256 (293)
Q Consensus       242 L~~L~i~~C~~L~~l  256 (293)
                      |++|++++| +++.+
T Consensus       331 L~~L~L~~n-~l~~l  344 (384)
T d2omza2         331 LQRLFFANN-KVSDV  344 (384)
T ss_dssp             CCEEECCSS-CCCCC
T ss_pred             CCEEECCCC-CCCCC
Confidence            999999988 67776

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.23  E-value=5.7e-11  Score=101.03  Aligned_cols=203  Identities=14%  Similarity=0.140  Sum_probs=131.0

Q ss_pred             cccceeeccccccccccccccccccCCCcceEeEcCCCCcc-ccccCccCCCCeeEEEeccccccccccccCccchhhhh
Q 037794           37 NELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMK-TFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQ  115 (293)
Q Consensus        37 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~-~lp~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~  115 (293)
                      ..++.|++.++..-...+.......+++|++|++++|..+. .+|..+.++++|+.|+++++              ....
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N--------------~l~~  115 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT--------------NVSG  115 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEE--------------CCEE
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccc--------------cccc
Confidence            36888999886332222222236789999999999887776 78999999999999999976              1111


Q ss_pred             hhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCC-CeEEecCcccccc
Q 037794          116 KRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNL-RWLEVRNCDSLEE  194 (293)
Q Consensus       116 ~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L-~~L~i~~c~~l~~  194 (293)
                      .....+..+..|+.+++.++.....++ ..   +..+++++.++++++..... +|.. +..+..+ +.+.+.+ ..+..
T Consensus       116 ~~~~~~~~~~~L~~l~l~~N~~~~~~p-~~---l~~l~~L~~l~l~~n~l~~~-ip~~-~~~l~~l~~~l~~~~-n~l~~  188 (313)
T d1ogqa_         116 AIPDFLSQIKTLVTLDFSYNALSGTLP-PS---ISSLPNLVGITFDGNRISGA-IPDS-YGSFSKLFTSMTISR-NRLTG  188 (313)
T ss_dssp             ECCGGGGGCTTCCEEECCSSEEESCCC-GG---GGGCTTCCEEECCSSCCEEE-CCGG-GGCCCTTCCEEECCS-SEEEE
T ss_pred             cccccccchhhhcccccccccccccCc-hh---hccCcccceeeccccccccc-cccc-ccccccccccccccc-ccccc
Confidence            222334678899999998864333222 11   56789999999998876544 3665 5556666 6676665 33333


Q ss_pred             ccc--ccccc---------ccc---ccCCCCCCcccEEecCCCCCCceeccCCCccccCCCcceEeeecCCCcc-ccccc
Q 037794          195 VLH--LEELN---------ADK---EHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDME-TFISN  259 (293)
Q Consensus       195 i~~--~~~~~---------~~~---~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~~L~-~l~p~  259 (293)
                      ...  .....         ...   ......+++++.+.+.++. +....   ..+..+++|+.|+++++ +++ .+ |.
T Consensus       189 ~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~-l~~~~---~~~~~~~~L~~L~Ls~N-~l~g~i-P~  262 (313)
T d1ogqa_         189 KIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS-LAFDL---GKVGLSKNLNGLDLRNN-RIYGTL-PQ  262 (313)
T ss_dssp             ECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSE-ECCBG---GGCCCCTTCCEEECCSS-CCEECC-CG
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccc-ccccc---cccccccccccccCccC-eecccC-Ch
Confidence            211  00000         000   0011233788899888864 33211   45677899999999998 687 55 98


Q ss_pred             cchhhcc
Q 037794          260 SVLHVTT  266 (293)
Q Consensus       260 ~l~~l~~  266 (293)
                      +++.+..
T Consensus       263 ~l~~L~~  269 (313)
T d1ogqa_         263 GLTQLKF  269 (313)
T ss_dssp             GGGGCTT
T ss_pred             HHhCCCC
Confidence            8877654

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.22  E-value=1.1e-10  Score=93.69  Aligned_cols=165  Identities=13%  Similarity=0.194  Sum_probs=97.9

Q ss_pred             ccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccCccCCCCeeEEEeccccccccccccCccchhhhh
Q 037794           36 FNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQ  115 (293)
Q Consensus        36 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~  115 (293)
                      +.+|+.|++.++. ++.+..   ...+++|++|+++++ +++.++ .+..+++|+.|+++++               .+.
T Consensus        45 L~~L~~L~l~~~~-i~~l~~---l~~l~~L~~L~L~~n-~i~~l~-~~~~l~~L~~L~l~~n---------------~i~  103 (210)
T d1h6ta2          45 LNSIDQIIANNSD-IKSVQG---IQYLPNVTKLFLNGN-KLTDIK-PLANLKNLGWLFLDEN---------------KVK  103 (210)
T ss_dssp             HHTCCEEECTTSC-CCCCTT---GGGCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSS---------------CCC
T ss_pred             hcCccEEECcCCC-CCCchh---HhhCCCCCEEeCCCc-cccCcc-ccccCccccccccccc---------------ccc
Confidence            5667777776653 333321   346778888888776 455554 3456777888887765               111


Q ss_pred             hhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCccccccc
Q 037794          116 KRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEV  195 (293)
Q Consensus       116 ~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i  195 (293)
                      .++ .+..+++|+.|.+.++.. ..+.     +...+++++.++++++.. .+. +  ....+++|+.+++.++ .++++
T Consensus       104 ~l~-~l~~l~~L~~L~l~~~~~-~~~~-----~l~~l~~l~~l~~~~n~l-~~~-~--~~~~l~~L~~l~l~~n-~l~~i  171 (210)
T d1h6ta2         104 DLS-SLKDLKKLKSLSLEHNGI-SDIN-----GLVHLPQLESLYLGNNKI-TDI-T--VLSRLTKLDTLSLEDN-QISDI  171 (210)
T ss_dssp             CGG-GGTTCTTCCEEECTTSCC-CCCG-----GGGGCTTCCEEECCSSCC-CCC-G--GGGGCTTCSEEECCSS-CCCCC
T ss_pred             ccc-cccccccccccccccccc-cccc-----cccccccccccccccccc-ccc-c--cccccccccccccccc-ccccc
Confidence            221 235567777777777542 2221     134556777777766653 321 1  2456777888877774 34444


Q ss_pred             ccccccccccccCCCCCCcccEEecCCCCCCceeccCCCccccCCCcceEeeec
Q 037794          196 LHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIEN  249 (293)
Q Consensus       196 ~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~  249 (293)
                      ..   +.        .+++|++|+++++ .++++    ..+..+++|+.|++++
T Consensus       172 ~~---l~--------~l~~L~~L~Ls~N-~i~~l----~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         172 VP---LA--------GLTKLQNLYLSKN-HISDL----RALAGLKNLDVLELFS  209 (210)
T ss_dssp             GG---GT--------TCTTCCEEECCSS-CCCBC----GGGTTCTTCSEEEEEE
T ss_pred             cc---cc--------CCCCCCEEECCCC-CCCCC----hhhcCCCCCCEEEccC
Confidence            32   11        1377888888775 56665    3566777777777764

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.21  E-value=1e-10  Score=93.06  Aligned_cols=56  Identities=13%  Similarity=0.228  Sum_probs=26.3

Q ss_pred             ccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccCccCCCCeeEEEeccc
Q 037794           36 FNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKK   97 (293)
Q Consensus        36 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~L~~L~l~~c   97 (293)
                      +++++.|++.++. ++++.   ....+++|+.|+++++ +++.++. +..+++|+.|.++++
T Consensus        39 l~~l~~L~l~~~~-i~~l~---~l~~l~nL~~L~Ls~N-~l~~~~~-l~~l~~L~~L~l~~n   94 (199)
T d2omxa2          39 LDQVTTLQADRLG-IKSID---GVEYLNNLTQINFSNN-QLTDITP-LKNLTKLVDILMNNN   94 (199)
T ss_dssp             HTTCCEEECTTSC-CCCCT---TGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS
T ss_pred             hcCCCEEECCCCC-CCCcc---ccccCCCcCcCccccc-cccCccc-ccCCccccccccccc
Confidence            4455555555542 22221   1234555555555554 3444322 445555555555543

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.18  E-value=3.5e-10  Score=91.63  Aligned_cols=187  Identities=18%  Similarity=0.259  Sum_probs=131.0

Q ss_pred             CCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccCc
Q 037794            4 PNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGI   83 (293)
Q Consensus         4 l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~   83 (293)
                      +.+|++|++.+| .++++. ..        ..+++|++|+++++. +..+..   ...+++|+.+.+.++. ++.++ .+
T Consensus        40 l~~L~~L~l~~~-~i~~l~-~l--------~~l~~L~~L~ls~n~-i~~~~~---l~~l~~l~~l~~~~n~-~~~i~-~l  103 (227)
T d1h6ua2          40 LDGITTLSAFGT-GVTTIE-GV--------QYLNNLIGLELKDNQ-ITDLAP---LKNLTKITELELSGNP-LKNVS-AI  103 (227)
T ss_dssp             HHTCCEEECTTS-CCCCCT-TG--------GGCTTCCEEECCSSC-CCCCGG---GTTCCSCCEEECCSCC-CSCCG-GG
T ss_pred             cCCcCEEECCCC-CCCcch-hH--------hcCCCCcEeecCCce-eecccc---cccccccccccccccc-ccccc-cc
Confidence            567899999987 566653 22        239999999999874 344432   3478999999999874 45553 45


Q ss_pred             cCCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccC
Q 037794           84 VSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDC  163 (293)
Q Consensus        84 ~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c  163 (293)
                      ..+++|+.+.+++|....                ...+...+.++.+.+.++.. ...     .++...++|++|.+.+|
T Consensus       104 ~~l~~L~~l~l~~~~~~~----------------~~~~~~~~~~~~l~~~~~~~-~~~-----~~~~~~~~L~~L~l~~n  161 (227)
T d1h6ua2         104 AGLQSIKTLDLTSTQITD----------------VTPLAGLSNLQVLYLDLNQI-TNI-----SPLAGLTNLQYLSIGNA  161 (227)
T ss_dssp             TTCTTCCEEECTTSCCCC----------------CGGGTTCTTCCEEECCSSCC-CCC-----GGGGGCTTCCEEECCSS
T ss_pred             cccccccccccccccccc----------------cchhccccchhhhhchhhhh-chh-----hhhcccccccccccccc
Confidence            678999999998771110                11224567888888877542 211     12456688999999887


Q ss_pred             CCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceeccCCCccccCCCcc
Q 037794          164 ANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLW  243 (293)
Q Consensus       164 ~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~  243 (293)
                      .... . +  .+.++++|++|++.++ .+++++.   +.        .+++|++|+++++ +++++    ..+..+++|+
T Consensus       162 ~~~~-~-~--~l~~l~~L~~L~Ls~n-~l~~l~~---l~--------~l~~L~~L~Ls~N-~lt~i----~~l~~l~~L~  220 (227)
T d1h6ua2         162 QVSD-L-T--PLANLSKLTTLKADDN-KISDISP---LA--------SLPNLIEVHLKNN-QISDV----SPLANTSNLF  220 (227)
T ss_dssp             CCCC-C-G--GGTTCTTCCEEECCSS-CCCCCGG---GG--------GCTTCCEEECTTS-CCCBC----GGGTTCTTCC
T ss_pred             cccc-c-h--hhcccccceecccCCC-ccCCChh---hc--------CCCCCCEEECcCC-cCCCC----cccccCCCCC
Confidence            6432 2 2  2778999999999996 5766643   22        2399999999997 68887    4577899999


Q ss_pred             eEeeec
Q 037794          244 SLTIEN  249 (293)
Q Consensus       244 ~L~i~~  249 (293)
                      .|++++
T Consensus       221 ~L~lsn  226 (227)
T d1h6ua2         221 IVTLTN  226 (227)
T ss_dssp             EEEEEE
T ss_pred             EEEeeC
Confidence            999874

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.16  E-value=8e-10  Score=93.34  Aligned_cols=217  Identities=17%  Similarity=0.160  Sum_probs=132.6

Q ss_pred             ccc--cceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccCccCCCCeeE
Q 037794           14 YCE--KIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGIVSTPKLHE   91 (293)
Q Consensus        14 ~c~--~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~L~~   91 (293)
                      +|.  .++++|...          .+++++|+++++ .+++++.. ...++++|++|+++++......|..+.++++|+.
T Consensus        16 ~C~~~~L~~lP~~l----------~~~l~~L~Ls~N-~i~~l~~~-~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~   83 (305)
T d1xkua_          16 QCSDLGLEKVPKDL----------PPDTALLDLQNN-KITEIKDG-DFKNLKNLHTLILINNKISKISPGAFAPLVKLER   83 (305)
T ss_dssp             ECTTSCCCSCCCSC----------CTTCCEEECCSS-CCCCBCTT-TTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCE
T ss_pred             EecCCCCCccCCCC----------CCCCCEEECcCC-cCCCcChh-HhhccccccccccccccccccchhhhhCCCccCE
Confidence            454  467777643          568999999997 56777653 2457899999999998655544566788999999


Q ss_pred             EEecccccccccc-ccCcc---c---hhhhhhhh-hhhccCCCccEEEecCCCCce-EeccCCCCCcccCCCccEEEecc
Q 037794           92 VQVSKKEEDELHH-WEGNK---L---NSTIQKRY-EEMIGFRDIERLQLSHFPRLK-EIWHGQALPVSFFNNLFKLVVDD  162 (293)
Q Consensus        92 L~l~~c~~~~~~~-~~~~~---~---~~~~~~l~-~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~~~~~l~~L~~L~i~~  162 (293)
                      |.+.++. ..... .....   +   ...+..+. ........+..+......... .....   .+..+++|+.+.+.+
T Consensus        84 L~l~~n~-l~~l~~~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~---~~~~l~~L~~l~l~~  159 (305)
T d1xkua_          84 LYLSKNQ-LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENG---AFQGMKKLSYIRIAD  159 (305)
T ss_dssp             EECCSSC-CSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTT---GGGGCTTCCEEECCS
T ss_pred             ecccCCc-cCcCccchhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCcc---ccccccccCcccccc
Confidence            9999872 11110 00000   0   00011111 112234444455544432111 11111   134567888888887


Q ss_pred             CCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceeccCCCccccCCCc
Q 037794          163 CANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPML  242 (293)
Q Consensus       163 c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L  242 (293)
                      +... . ++..   .+++|++|++.++......+  ..+..       . +.++.|.++++ .++++..  ..+..+++|
T Consensus       160 n~l~-~-l~~~---~~~~L~~L~l~~n~~~~~~~--~~~~~-------~-~~l~~L~~s~n-~l~~~~~--~~~~~l~~L  221 (305)
T d1xkua_         160 TNIT-T-IPQG---LPPSLTELHLDGNKITKVDA--ASLKG-------L-NNLAKLGLSFN-SISAVDN--GSLANTPHL  221 (305)
T ss_dssp             SCCC-S-CCSS---CCTTCSEEECTTSCCCEECT--GGGTT-------C-TTCCEEECCSS-CCCEECT--TTGGGSTTC
T ss_pred             CCcc-c-cCcc---cCCccCEEECCCCcCCCCCh--hHhhc-------c-ccccccccccc-ccccccc--ccccccccc
Confidence            7533 2 2432   35788899888854332221  11111       3 78999999886 6777754  667889999


Q ss_pred             ceEeeecCCCccccccccchhhcc
Q 037794          243 WSLTIENCPDMETFISNSVLHVTT  266 (293)
Q Consensus       243 ~~L~i~~C~~L~~l~p~~l~~l~~  266 (293)
                      ++|++++| +|+.+ |.++..+..
T Consensus       222 ~~L~L~~N-~L~~l-p~~l~~l~~  243 (305)
T d1xkua_         222 RELHLNNN-KLVKV-PGGLADHKY  243 (305)
T ss_dssp             CEEECCSS-CCSSC-CTTTTTCSS
T ss_pred             eeeecccc-ccccc-ccccccccC
Confidence            99999998 79998 877666543

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=9.9e-10  Score=89.54  Aligned_cols=186  Identities=16%  Similarity=0.137  Sum_probs=82.2

Q ss_pred             cccceeeccccccccccccccccccCCCcceEeEcCCCCcccccc-CccCCCCeeEEEeccccccccccccCccchhhhh
Q 037794           37 NELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQ-GIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQ  115 (293)
Q Consensus        37 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~-~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~  115 (293)
                      ++++.|++++. .++.++.. ...++++|++|+++++.....++. .+..+++++.+.+..+.+....            
T Consensus        29 ~~l~~L~Ls~n-~i~~l~~~-~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~------------   94 (242)
T d1xwdc1          29 RNAIELRFVLT-KLRVIQKG-AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYI------------   94 (242)
T ss_dssp             SCCSEEEEESC-CCCEECTT-TTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEE------------
T ss_pred             CCCCEEECcCC-cCCccChh-Hhhccchhhhhhhccccccceeecccccccccccccccccccccccc------------
Confidence            45666666654 24444432 123566666666666544443332 2345566666655544111100            


Q ss_pred             hhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccC-CCCeEEecCcccccc
Q 037794          116 KRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLS-NLRWLEVRNCDSLEE  194 (293)
Q Consensus       116 ~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~-~L~~L~i~~c~~l~~  194 (293)
                       ....+..+++|+.+.+.++. +...+...  ....+..+..+.. ++..+..+ +...+.+++ .++.|++.+ ..++.
T Consensus        95 -~~~~~~~l~~L~~l~l~~~~-l~~~~~~~--~~~~l~~l~~~~~-~n~~l~~i-~~~~~~~~~~~l~~L~l~~-n~l~~  167 (242)
T d1xwdc1          95 -NPEAFQNLPNLQYLLISNTG-IKHLPDVH--KIHSLQKVLLDIQ-DNINIHTI-ERNSFVGLSFESVILWLNK-NGIQE  167 (242)
T ss_dssp             -CTTSEECCTTCCEEEEESCC-CCSCCCCT--TTCBSSCEEEEEE-SCTTCCEE-CTTSSTTSBSSCEEEECCS-SCCCE
T ss_pred             -ccccccccccccccccchhh-hccccccc--ccccccccccccc-cccccccc-cccccccccccceeeeccc-ccccc
Confidence             01112455666666666542 33222111  0112222222222 22223332 322233333 455555554 34444


Q ss_pred             cccccccccccccCCCCCCcccEEecCCCCCCceeccCCCccccCCCcceEeeecCCCcccc
Q 037794          195 VLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETF  256 (293)
Q Consensus       195 i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l  256 (293)
                      +..  ....       . ++++++......++++++.  +.+..+++|++|+++++ +++.+
T Consensus       168 i~~--~~~~-------~-~~l~~~~~l~~n~l~~l~~--~~f~~l~~L~~L~Ls~N-~l~~l  216 (242)
T d1xwdc1         168 IHN--CAFN-------G-TQLDELNLSDNNNLEELPN--DVFHGASGPVILDISRT-RIHSL  216 (242)
T ss_dssp             ECT--TTTT-------T-CCEEEEECTTCTTCCCCCT--TTTTTSCCCSEEECTTS-CCCCC
T ss_pred             ccc--cccc-------c-hhhhccccccccccccccH--HHhcCCCCCCEEECCCC-cCCcc
Confidence            431  1001       1 4455555444455665543  34555666666666665 46655

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=7.5e-10  Score=92.68  Aligned_cols=193  Identities=15%  Similarity=0.171  Sum_probs=132.7

Q ss_pred             cceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccc-cCccCCCCeeEEEec
Q 037794           17 KIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFS-QGIVSTPKLHEVQVS   95 (293)
Q Consensus        17 ~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp-~~~~~~~~L~~L~l~   95 (293)
                      +++.+|...          .+++++|+|+++ .++.++.. ...++++|++|+++++ ++..++ .....++.++.+...
T Consensus        22 ~L~~iP~~i----------p~~~~~L~Ls~N-~i~~i~~~-~f~~l~~L~~L~ls~n-~l~~i~~~~~~~~~~~~~l~~~   88 (284)
T d1ozna_          22 GLQAVPVGI----------PAASQRIFLHGN-RISHVPAA-SFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLS   88 (284)
T ss_dssp             CCSSCCTTC----------CTTCSEEECTTS-CCCEECTT-TTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECC
T ss_pred             CCCccCCCC----------CCCCCEEECcCC-cCCCCCHH-Hhhccccccccccccc-cccccccccccccccccccccc
Confidence            466676532          456889999886 45666643 2457888999999875 455443 334557778887765


Q ss_pred             cccccccccccCccchhhhhhh-hhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhH
Q 037794           96 KKEEDELHHWEGNKLNSTIQKR-YEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANL  174 (293)
Q Consensus        96 ~c~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~  174 (293)
                      ..              ..+..+ +..+..+++|+.|+++++. +..++...   .....+|+.+++.++. ++.+ +...
T Consensus        89 ~~--------------~~~~~l~~~~~~~l~~L~~L~l~~n~-~~~~~~~~---~~~~~~L~~l~l~~N~-l~~i-~~~~  148 (284)
T d1ozna_          89 DN--------------AQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGL---FRGLAALQYLYLQDNA-LQAL-PDDT  148 (284)
T ss_dssp             SC--------------TTCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTT---TTTCTTCCEEECCSSC-CCCC-CTTT
T ss_pred             cc--------------cccccccchhhcccccCCEEecCCcc-cccccccc---cchhcccchhhhcccc-cccc-ChhH
Confidence            43              111122 2234678999999999865 44444333   5567899999998775 4553 6666


Q ss_pred             HhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceeccCCCccccCCCcceEeeecCCCcc
Q 037794          175 LRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDME  254 (293)
Q Consensus       175 ~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~~L~  254 (293)
                      +..+++|++|++.++ .++.++. ..+..       . ++|+.+.+.++ +++.+..  ..+..+++|++|+++++ +++
T Consensus       149 f~~~~~L~~L~l~~N-~l~~l~~-~~f~~-------l-~~L~~l~l~~N-~l~~i~~--~~f~~l~~L~~L~l~~N-~i~  214 (284)
T d1ozna_         149 FRDLGNLTHLFLHGN-RISSVPE-RAFRG-------L-HSLDRLLLHQN-RVAHVHP--HAFRDLGRLMTLYLFAN-NLS  214 (284)
T ss_dssp             TTTCTTCCEEECCSS-CCCEECT-TTTTT-------C-TTCCEEECCSS-CCCEECT--TTTTTCTTCCEEECCSS-CCS
T ss_pred             hccccchhhcccccC-cccccch-hhhcc-------c-cccchhhhhhc-cccccCh--hHhhhhhhccccccccc-ccc
Confidence            888999999999995 5766653 22222       3 89999999985 5666644  67888999999999997 677


Q ss_pred             cc
Q 037794          255 TF  256 (293)
Q Consensus       255 ~l  256 (293)
                      .+
T Consensus       215 ~~  216 (284)
T d1ozna_         215 AL  216 (284)
T ss_dssp             CC
T ss_pred             cc
Confidence            77

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.12  E-value=3.2e-10  Score=90.89  Aligned_cols=165  Identities=19%  Similarity=0.250  Sum_probs=117.3

Q ss_pred             CCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccCc
Q 037794            4 PNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGI   83 (293)
Q Consensus         4 l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~   83 (293)
                      +.+|++|++++| .++.+..         +..+++|++|+++++. +++++.   ...+++|+.|++++| +++.+| .+
T Consensus        45 L~~L~~L~l~~~-~i~~l~~---------l~~l~~L~~L~L~~n~-i~~l~~---~~~l~~L~~L~l~~n-~i~~l~-~l  108 (210)
T d1h6ta2          45 LNSIDQIIANNS-DIKSVQG---------IQYLPNVTKLFLNGNK-LTDIKP---LANLKNLGWLFLDEN-KVKDLS-SL  108 (210)
T ss_dssp             HHTCCEEECTTS-CCCCCTT---------GGGCTTCCEEECCSSC-CCCCGG---GTTCTTCCEEECCSS-CCCCGG-GG
T ss_pred             hcCccEEECcCC-CCCCchh---------HhhCCCCCEEeCCCcc-ccCccc---cccCccccccccccc-cccccc-cc
Confidence            457888888887 5555442         2239999999999874 555543   347899999999987 577775 46


Q ss_pred             cCCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccC
Q 037794           84 VSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDC  163 (293)
Q Consensus        84 ~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c  163 (293)
                      ..+++|+.|.+.++..               .. ...+..+++++.+.+.++. ++...     ....+++|++++++++
T Consensus       109 ~~l~~L~~L~l~~~~~---------------~~-~~~l~~l~~l~~l~~~~n~-l~~~~-----~~~~l~~L~~l~l~~n  166 (210)
T d1h6ta2         109 KDLKKLKSLSLEHNGI---------------SD-INGLVHLPQLESLYLGNNK-ITDIT-----VLSRLTKLDTLSLEDN  166 (210)
T ss_dssp             TTCTTCCEEECTTSCC---------------CC-CGGGGGCTTCCEEECCSSC-CCCCG-----GGGGCTTCSEEECCSS
T ss_pred             cccccccccccccccc---------------cc-ccccccccccccccccccc-ccccc-----cccccccccccccccc
Confidence            7889999999997711               11 1234677899999998754 44322     1456799999999988


Q ss_pred             CCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCC
Q 037794          164 ANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLID  222 (293)
Q Consensus       164 ~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~  222 (293)
                      . +.++ +.  +.++++|++|+++++ .+++++.   +..       + ++|++|++++
T Consensus       167 ~-l~~i-~~--l~~l~~L~~L~Ls~N-~i~~l~~---l~~-------l-~~L~~L~Ls~  209 (210)
T d1h6ta2         167 Q-ISDI-VP--LAGLTKLQNLYLSKN-HISDLRA---LAG-------L-KNLDVLELFS  209 (210)
T ss_dssp             C-CCCC-GG--GTTCTTCCEEECCSS-CCCBCGG---GTT-------C-TTCSEEEEEE
T ss_pred             c-cccc-cc--ccCCCCCCEEECCCC-CCCCChh---hcC-------C-CCCCEEEccC
Confidence            5 4443 32  778999999999996 5776642   222       3 8999998864

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.12  E-value=3.6e-10  Score=89.74  Aligned_cols=151  Identities=15%  Similarity=0.248  Sum_probs=111.6

Q ss_pred             cCCCcceEeEcCCCCccccccCccCCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCCCCceE
Q 037794           61 EFPSLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRLKE  140 (293)
Q Consensus        61 ~~~~L~~L~i~~c~~l~~lp~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~  140 (293)
                      .++++++|.+.++ .++.+ .++..+++|+.|+++++               .+..+. .+..+++|+.|+++++. +..
T Consensus        38 ~l~~l~~L~l~~~-~i~~l-~~l~~l~nL~~L~Ls~N---------------~l~~~~-~l~~l~~L~~L~l~~n~-~~~   98 (199)
T d2omxa2          38 DLDQVTTLQADRL-GIKSI-DGVEYLNNLTQINFSNN---------------QLTDIT-PLKNLTKLVDILMNNNQ-IAD   98 (199)
T ss_dssp             HHTTCCEEECTTS-CCCCC-TTGGGCTTCCEEECCSS---------------CCCCCG-GGTTCTTCCEEECCSSC-CCC
T ss_pred             HhcCCCEEECCCC-CCCCc-cccccCCCcCcCccccc---------------cccCcc-cccCCcccccccccccc-ccc
Confidence            5789999999987 46666 45678999999999986               111222 24678999999999865 333


Q ss_pred             eccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEec
Q 037794          141 IWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRL  220 (293)
Q Consensus       141 ~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l  220 (293)
                      ++     +...+++|++|++++|.....  +  .+..+++|+.|++.++ .+..++.   +.        .+++|++|.+
T Consensus        99 ~~-----~l~~l~~L~~L~l~~~~~~~~--~--~~~~l~~L~~L~l~~n-~l~~~~~---l~--------~~~~L~~L~l  157 (199)
T d2omxa2          99 IT-----PLANLTNLTGLTLFNNQITDI--D--PLKNLTNLNRLELSSN-TISDISA---LS--------GLTSLQQLNF  157 (199)
T ss_dssp             CG-----GGTTCTTCSEEECCSSCCCCC--G--GGTTCTTCSEEECCSS-CCCCCGG---GT--------TCTTCSEEEC
T ss_pred             cc-----ccccccccccccccccccccc--c--ccchhhhhHHhhhhhh-hhccccc---cc--------cccccccccc
Confidence            32     145679999999998876542  2  3677999999999985 3554432   11        2389999999


Q ss_pred             CCCCCCceeccCCCccccCCCcceEeeecCCCcccccc
Q 037794          221 IDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFIS  258 (293)
Q Consensus       221 ~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~p  258 (293)
                      .++ +++++    ..+..+++|++|++++| +++.+ |
T Consensus       158 ~~n-~l~~l----~~l~~l~~L~~L~ls~N-~i~~i-~  188 (199)
T d2omxa2         158 SSN-QVTDL----KPLANLTTLERLDISSN-KVSDI-S  188 (199)
T ss_dssp             CSS-CCCCC----GGGTTCTTCCEEECCSS-CCCCC-G
T ss_pred             ccc-cccCC----ccccCCCCCCEEECCCC-CCCCC-c
Confidence            986 67776    45778999999999998 68887 5

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.10  E-value=9.2e-10  Score=95.50  Aligned_cols=172  Identities=13%  Similarity=0.216  Sum_probs=98.0

Q ss_pred             cccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccCccCCCCeeEEEeccccccccccccCccchhhh
Q 037794           35 AFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTI  114 (293)
Q Consensus        35 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~  114 (293)
                      .+++++.+.++++. +..++.   ...+++|++|.+.++ .++.++ .+..+++|+.+.+.++               .+
T Consensus       195 ~l~~~~~l~l~~n~-i~~~~~---~~~~~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n---------------~l  253 (384)
T d2omza2         195 KLTNLESLIATNNQ-ISDITP---LGILTNLDELSLNGN-QLKDIG-TLASLTNLTDLDLANN---------------QI  253 (384)
T ss_dssp             GCTTCSEEECCSSC-CCCCGG---GGGCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSS---------------CC
T ss_pred             cccccceeeccCCc-cCCCCc---ccccCCCCEEECCCC-CCCCcc-hhhcccccchhccccC---------------cc
Confidence            36677777776642 333322   225667777777775 344443 3456777777777765               01


Q ss_pred             hhhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccc
Q 037794          115 QKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEE  194 (293)
Q Consensus       115 ~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~  194 (293)
                      ..+. .+..+++|+.|+++++. +..+.     +...++.++.+.+.++.. .++ +  .+..+++++.|++.++ ++++
T Consensus       254 ~~~~-~~~~~~~L~~L~l~~~~-l~~~~-----~~~~~~~l~~l~~~~n~l-~~~-~--~~~~~~~l~~L~ls~n-~l~~  321 (384)
T d2omza2         254 SNLA-PLSGLTKLTELKLGANQ-ISNIS-----PLAGLTALTNLELNENQL-EDI-S--PISNLKNLTYLTLYFN-NISD  321 (384)
T ss_dssp             CCCG-GGTTCTTCSEEECCSSC-CCCCG-----GGTTCTTCSEEECCSSCC-SCC-G--GGGGCTTCSEEECCSS-CCSC
T ss_pred             CCCC-cccccccCCEeeccCcc-cCCCC-----cccccccccccccccccc-ccc-c--ccchhcccCeEECCCC-CCCC
Confidence            1111 13456777777776643 33221     133456677777766543 221 2  2566777777777763 4444


Q ss_pred             cccccccccccccCCCCCCcccEEecCCCCCCceeccCCCccccCCCcceEeeecCCCcccc
Q 037794          195 VLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETF  256 (293)
Q Consensus       195 i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l  256 (293)
                      +..   +.        .+++|++|+++++ .++++    ..+..+++|++|++++| +++.+
T Consensus       322 l~~---l~--------~l~~L~~L~L~~n-~l~~l----~~l~~l~~L~~L~l~~N-~l~~l  366 (384)
T d2omza2         322 ISP---VS--------SLTKLQRLFFANN-KVSDV----SSLANLTNINWLSAGHN-QISDL  366 (384)
T ss_dssp             CGG---GG--------GCTTCCEEECCSS-CCCCC----GGGGGCTTCCEEECCSS-CCCBC
T ss_pred             Ccc---cc--------cCCCCCEEECCCC-CCCCC----hhHcCCCCCCEEECCCC-cCCCC
Confidence            431   11        2377777777776 56655    34566777777777766 56666

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=2.2e-09  Score=87.41  Aligned_cols=212  Identities=11%  Similarity=0.135  Sum_probs=132.7

Q ss_pred             CCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCcccccc-C
Q 037794            4 PNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQ-G   82 (293)
Q Consensus         4 l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~-~   82 (293)
                      ++++++|+++++ .++.++...       ...+++|++|+++++.....++. .....+++++++.+..+..+..++. .
T Consensus        28 ~~~l~~L~Ls~n-~i~~l~~~~-------f~~l~~L~~L~ls~n~~~~~i~~-~~f~~l~~l~~l~~~~~n~l~~~~~~~   98 (242)
T d1xwdc1          28 PRNAIELRFVLT-KLRVIQKGA-------FSGFGDLEKIEISQNDVLEVIEA-DVFSNLPKLHEIRIEKANNLLYINPEA   98 (242)
T ss_dssp             CSCCSEEEEESC-CCCEECTTT-------TTTCTTCCEEEEESCTTCCEECS-SSEESCTTCCEEEEECCTTCCEECTTS
T ss_pred             CCCCCEEECcCC-cCCccChhH-------hhccchhhhhhhccccccceeec-ccccccccccccccccccccccccccc
Confidence            358999999986 688888642       12389999999998866554433 2345789999999998888876654 4


Q ss_pred             ccCCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEecc
Q 037794           83 IVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDD  162 (293)
Q Consensus        83 ~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~  162 (293)
                      +..+++|+.+.+.++. .....            ....+..+..+..+...+ ..+..+.... +. +....++.|++.+
T Consensus        99 ~~~l~~L~~l~l~~~~-l~~~~------------~~~~~~~l~~l~~~~~~n-~~l~~i~~~~-~~-~~~~~l~~L~l~~  162 (242)
T d1xwdc1          99 FQNLPNLQYLLISNTG-IKHLP------------DVHKIHSLQKVLLDIQDN-INIHTIERNS-FV-GLSFESVILWLNK  162 (242)
T ss_dssp             EECCTTCCEEEEESCC-CCSCC------------CCTTTCBSSCEEEEEESC-TTCCEECTTS-ST-TSBSSCEEEECCS
T ss_pred             ccccccccccccchhh-hcccc------------cccccccccccccccccc-cccccccccc-cc-cccccceeeeccc
Confidence            5789999999998761 11000            001112334444444433 4566665443 21 1124688888876


Q ss_pred             CCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceeccCCCccccCCCc
Q 037794          163 CANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPML  242 (293)
Q Consensus       163 c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L  242 (293)
                      +. +..+ +.. +...++++++....+..++.++. ....        .+++|+.|++.+. +++.++.  ..+..++.|
T Consensus       163 n~-l~~i-~~~-~~~~~~l~~~~~l~~n~l~~l~~-~~f~--------~l~~L~~L~Ls~N-~l~~l~~--~~~~~l~~L  227 (242)
T d1xwdc1         163 NG-IQEI-HNC-AFNGTQLDELNLSDNNNLEELPN-DVFH--------GASGPVILDISRT-RIHSLPS--YGLENLKKL  227 (242)
T ss_dssp             SC-CCEE-CTT-TTTTCCEEEEECTTCTTCCCCCT-TTTT--------TSCCCSEEECTTS-CCCCCCS--SSCTTCCEE
T ss_pred             cc-cccc-ccc-cccchhhhccccccccccccccH-HHhc--------CCCCCCEEECCCC-cCCccCH--HHHcCCccc
Confidence            54 4443 443 33456777776666677877753 1122        2399999999885 5887764  455566666


Q ss_pred             ceEeeecCCCccccccc
Q 037794          243 WSLTIENCPDMETFISN  259 (293)
Q Consensus       243 ~~L~i~~C~~L~~l~p~  259 (293)
                      +.+++.   +|+++ |+
T Consensus       228 ~~l~~~---~l~~l-p~  240 (242)
T d1xwdc1         228 RARSTY---NLKKL-PT  240 (242)
T ss_dssp             ESSSEE---SSSCS-CC
T ss_pred             ccCcCC---CCCcC-CC
Confidence            665554   45566 63

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.02  E-value=2.8e-09  Score=91.05  Aligned_cols=61  Identities=16%  Similarity=0.051  Sum_probs=39.3

Q ss_pred             CCCcccEEecCCCCCCceeccCCCccccCCCcceEeeecCCCccccccccchhhcc-CCCCCcccccccccc
Q 037794          211 LFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVLHVTT-DNKEPQKLTSEENFL  281 (293)
Q Consensus       211 ~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~p~~l~~l~~-~~~~~~~l~~~~~~~  281 (293)
                      .+++|++|++.++ ++++++.      .+++|++|++++| +|+.+ |..++.+.. ++.+.. ++.+.++|
T Consensus       282 ~~~~L~~L~Ls~N-~l~~lp~------~~~~L~~L~L~~N-~L~~l-~~~~~~L~~L~L~~N~-L~~lp~~~  343 (353)
T d1jl5a_         282 LPPSLEELNVSNN-KLIELPA------LPPRLERLIASFN-HLAEV-PELPQNLKQLHVEYNP-LREFPDIP  343 (353)
T ss_dssp             CCTTCCEEECCSS-CCSCCCC------CCTTCCEEECCSS-CCSCC-CCCCTTCCEEECCSSC-CSSCCCCC
T ss_pred             cCCCCCEEECCCC-ccCcccc------ccCCCCEEECCCC-cCCcc-ccccCCCCEEECcCCc-CCCCCccc
Confidence            3588999999986 5776642      3588999999887 68887 644444332 333332 44555555

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.95  E-value=1.6e-08  Score=86.21  Aligned_cols=32  Identities=16%  Similarity=0.260  Sum_probs=17.5

Q ss_pred             CcceEeEcCCCCccccccCccCCCCeeEEEeccc
Q 037794           64 SLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKK   97 (293)
Q Consensus        64 ~L~~L~i~~c~~l~~lp~~~~~~~~L~~L~l~~c   97 (293)
                      +|++|+++++ .+..+|. ...+++|+.|++.++
T Consensus        99 ~L~~L~L~~n-~l~~lp~-~~~l~~L~~L~l~~~  130 (353)
T d1jl5a_          99 LLEYLGVSNN-QLEKLPE-LQNSSFLKIIDVDNN  130 (353)
T ss_dssp             TCCEEECCSS-CCSSCCC-CTTCTTCCEEECCSS
T ss_pred             cccccccccc-ccccccc-hhhhccceeeccccc
Confidence            4566666554 3444543 345566666666554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=1e-08  Score=78.43  Aligned_cols=106  Identities=19%  Similarity=0.270  Sum_probs=59.3

Q ss_pred             cCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccc
Q 037794          123 GFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELN  202 (293)
Q Consensus       123 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~  202 (293)
                      .+++|+.|+++++ .++.+.  +   +..+++|++|++++|. +..+ +...+.++++|++|++.++ .++.+.....+.
T Consensus        39 ~l~~L~~L~Ls~N-~i~~l~--~---~~~l~~L~~L~ls~N~-i~~l-~~~~~~~l~~L~~L~L~~N-~i~~~~~l~~l~  109 (162)
T d1a9na_          39 TLDQFDAIDFSDN-EIRKLD--G---FPLLRRLKTLLVNNNR-ICRI-GEGLDQALPDLTELILTNN-SLVELGDLDPLA  109 (162)
T ss_dssp             GTTCCSEEECCSS-CCCEEC--C---CCCCSSCCEEECCSSC-CCEE-CSCHHHHCTTCCEEECCSC-CCCCGGGGGGGG
T ss_pred             ccccCCEEECCCC-CCCccC--C---cccCcchhhhhccccc-ccCC-Cccccccccccccceeccc-cccccccccccc
Confidence            3455566666553 344442  1   3456778888887776 3433 5455667888888888874 444443222222


Q ss_pred             cccccCCCCCCcccEEecCCCCCCceeccC-CCccccCCCcceEe
Q 037794          203 ADKEHIGPLFPRLFILRLIDLPKLKRFCNF-TGNIIEMPMLWSLT  246 (293)
Q Consensus       203 ~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~-~~~~~~l~~L~~L~  246 (293)
                      .        +++|++|++.+++ ++..+.. +..+..+|+|+.|+
T Consensus       110 ~--------l~~L~~L~l~~N~-i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_         110 S--------LKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             G--------CTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEET
T ss_pred             c--------ccccchhhcCCCc-cccccchHHHHHHHCCCcCeeC
Confidence            2        3788888888763 3333210 01245566666664

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.45  E-value=2.6e-07  Score=67.05  Aligned_cols=37  Identities=14%  Similarity=0.099  Sum_probs=17.1

Q ss_pred             cCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecC
Q 037794          151 FFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRN  188 (293)
Q Consensus       151 ~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~  188 (293)
                      .+++|++|+++++..- ++-....+..+++|+.|++.+
T Consensus        63 ~l~~L~~L~l~~N~i~-~~~~~~~l~~~~~L~~L~l~~   99 (124)
T d1dcea3          63 NLPRLQELLLCNNRLQ-QSAAIQPLVSCPRLVLLNLQG   99 (124)
T ss_dssp             TCSSCCEEECCSSCCC-SSSTTGGGGGCTTCCEEECTT
T ss_pred             cccccCeEECCCCccC-CCCCchhhcCCCCCCEEECCC
Confidence            4455555555544322 210112344555666666655

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=1.9e-07  Score=71.19  Aligned_cols=57  Identities=9%  Similarity=0.135  Sum_probs=25.8

Q ss_pred             ccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccCccCCCCeeEEEeccc
Q 037794           36 FNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKK   97 (293)
Q Consensus        36 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~L~~L~l~~c   97 (293)
                      ..+++.|+++++. +..++.  ....+++|+.|+++++ .++.+ .++..+++|+.|.+++|
T Consensus        17 ~~~lr~L~L~~n~-I~~i~~--~~~~l~~L~~L~Ls~N-~i~~l-~~~~~l~~L~~L~ls~N   73 (162)
T d1a9na_          17 AVRDRELDLRGYK-IPVIEN--LGATLDQFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNNN   73 (162)
T ss_dssp             TTSCEEEECTTSC-CCSCCC--GGGGTTCCSEEECCSS-CCCEE-CCCCCCSSCCEEECCSS
T ss_pred             cCcCcEEECCCCC-CCccCc--cccccccCCEEECCCC-CCCcc-CCcccCcchhhhhcccc
Confidence            3445555555542 222321  1234555555555553 34444 23344555555555543

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.43  E-value=6.1e-07  Score=70.08  Aligned_cols=68  Identities=13%  Similarity=0.183  Sum_probs=32.4

Q ss_pred             ccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccc
Q 037794          122 IGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVL  196 (293)
Q Consensus       122 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~  196 (293)
                      ..+++|+.|++++.. +..+..+.   +..+++|++|+++++. +..+ +..++.++++|++|++.+ ..++.++
T Consensus        51 ~~l~~L~~L~L~~N~-i~~~~~~~---~~~~~~L~~L~Ls~N~-l~~l-~~~~F~~l~~L~~L~L~~-N~l~~i~  118 (192)
T d1w8aa_          51 GRLPHLVKLELKRNQ-LTGIEPNA---FEGASHIQELQLGENK-IKEI-SNKMFLGLHQLKTLNLYD-NQISCVM  118 (192)
T ss_dssp             GGCTTCCEEECCSSC-CCCBCTTT---TTTCTTCCEEECCSCC-CCEE-CSSSSTTCTTCCEEECCS-SCCCEEC
T ss_pred             CCCceEeeeeccccc-cccccccc---cccccccceeeecccc-cccc-CHHHHhCCCcccccccCC-ccccccC
Confidence            345555555555532 33333222   3344555555555542 3333 333455555555555555 3444443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.41  E-value=6.3e-07  Score=69.98  Aligned_cols=106  Identities=17%  Similarity=0.163  Sum_probs=59.8

Q ss_pred             CCcceEeEcCCCCcc-ccc-cCccCCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCCCCceE
Q 037794           63 PSLERVFVTRCPNMK-TFS-QGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRLKE  140 (293)
Q Consensus        63 ~~L~~L~i~~c~~l~-~lp-~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~  140 (293)
                      +++++|++++. .++ .++ ..+..+++|+.|.+++.              .........+..+++|++|++++. .+..
T Consensus        29 ~~l~~L~Ls~N-~i~~~~~~~~f~~l~~L~~L~L~~N--------------~i~~~~~~~~~~~~~L~~L~Ls~N-~l~~   92 (192)
T d1w8aa_          29 LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRN--------------QLTGIEPNAFEGASHIQELQLGEN-KIKE   92 (192)
T ss_dssp             TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSS--------------CCCCBCTTTTTTCTTCCEEECCSC-CCCE
T ss_pred             CCCCEEEeCCC-CCcccccccccCCCceEeeeecccc--------------ccccccccccccccccceeeeccc-cccc
Confidence            45666666654 332 222 23345666666666543              000111122345666777777663 4666


Q ss_pred             eccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCc
Q 037794          141 IWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNC  189 (293)
Q Consensus       141 ~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c  189 (293)
                      ++.+.   +..+++|++|+++++. ++.+ +...+..+++|++|++.+.
T Consensus        93 l~~~~---F~~l~~L~~L~L~~N~-l~~i-~~~~f~~l~~L~~l~L~~N  136 (192)
T d1w8aa_          93 ISNKM---FLGLHQLKTLNLYDNQ-ISCV-MPGSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             ECSSS---STTCTTCCEEECCSSC-CCEE-CTTSSTTCTTCCEEECTTC
T ss_pred             cCHHH---HhCCCcccccccCCcc-cccc-CHHHhcCCccccccccccc
Confidence            66554   5567778888887764 4443 5555777778888877763

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.38  E-value=5.5e-07  Score=65.25  Aligned_cols=60  Identities=17%  Similarity=0.165  Sum_probs=29.6

Q ss_pred             ccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCC-ccCChhHHhccCCCCeE
Q 037794          122 IGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMS-SAIPANLLRCLSNLRWL  184 (293)
Q Consensus       122 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~-~~~p~~~~~~l~~L~~L  184 (293)
                      ..+++|+.|+++++ .+..++.-  .....+++|+.|++++..... +-.+......+|+|+++
T Consensus        62 ~~l~~L~~L~l~~N-~i~~~~~~--~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          62 ANLPRLQELLLCNN-RLQQSAAI--QPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             TTCSSCCEEECCSS-CCCSSSTT--GGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             ccccccCeEECCCC-ccCCCCCc--hhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            44555555555552 23332210  113456777777777654221 11234456667777765

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.12  E-value=2.1e-08  Score=79.28  Aligned_cols=32  Identities=28%  Similarity=0.263  Sum_probs=16.7

Q ss_pred             CCccEEEeccCCCCCccCChhHHhccCCCCeEEecC
Q 037794          153 NNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRN  188 (293)
Q Consensus       153 ~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~  188 (293)
                      ++|++|+++++. +.++   ..+.++++|+.|++++
T Consensus        93 ~~L~~L~l~~N~-i~~l---~~~~~l~~L~~L~L~~  124 (198)
T d1m9la_          93 DTLEELWISYNQ-IASL---SGIEKLVNLRVLYMSN  124 (198)
T ss_dssp             HHCCEEECSEEE-CCCH---HHHHHHHHSSEEEESE
T ss_pred             cccccccccccc-cccc---cccccccccccccccc
Confidence            456666665553 3321   2245556666666665

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=5.6e-06  Score=62.26  Aligned_cols=43  Identities=26%  Similarity=0.262  Sum_probs=20.7

Q ss_pred             cCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCccccccc
Q 037794          151 FFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEV  195 (293)
Q Consensus       151 ~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i  195 (293)
                      .+++|++|++.+...++.+ +...+.++++|+.|++.+ .+++.+
T Consensus        29 ~l~~l~~L~l~~n~~l~~i-~~~~f~~l~~L~~L~Ls~-N~l~~i   71 (156)
T d2ifga3          29 GAENLTELYIENQQHLQHL-ELRDLRGLGELRNLTIVK-SGLRFV   71 (156)
T ss_dssp             SCSCCSEEECCSCSSCCEE-CGGGSCSCCCCSEEECCS-SCCCEE
T ss_pred             CccccCeeecCCCcccccc-CchhhccccccCcceeec-cccCCc
Confidence            3345555555544444443 333455555555555555 334444

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.07  E-value=3.5e-08  Score=77.96  Aligned_cols=126  Identities=14%  Similarity=0.138  Sum_probs=73.5

Q ss_pred             cceeeccc-cccccccccccccccCCCcceEeEcCCCCccccccCccCCCCeeEEEeccccccccccccCccchhhhhhh
Q 037794           39 LKFLELDD-LPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKR  117 (293)
Q Consensus        39 L~~L~l~~-~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l  117 (293)
                      .+.+.+.+ .+.++.++..  ...+++|++|+++++ +++.++ ++..+++|+.|+++++               .+..+
T Consensus        25 ~~~~~l~~~~~~i~~l~~s--l~~L~~L~~L~Ls~n-~I~~i~-~l~~l~~L~~L~Ls~N---------------~i~~i   85 (198)
T d1m9la_          25 AEKVELHGMIPPIEKMDAT--LSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRN---------------LIKKI   85 (198)
T ss_dssp             CSCEECCBCCTTCCCCHHH--HHHTTTCCEEECSEE-EESCCC-CHHHHTTCCEEECCEE---------------EECSC
T ss_pred             cceeeeecccCchhhhhhH--HhcccccceeECccc-CCCCcc-cccCCccccChhhccc---------------ccccc
Confidence            44444433 3334443322  446778888888765 466663 4567788888888765               11112


Q ss_pred             hhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcc
Q 037794          118 YEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCD  190 (293)
Q Consensus       118 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~  190 (293)
                      ......+++|+.|+++++ .++.+..     +..+++|+.|+++++. +.++.....+.++++|+.|++.+++
T Consensus        86 ~~~~~~~~~L~~L~l~~N-~i~~l~~-----~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~L~~N~  151 (198)
T d1m9la_          86 ENLDAVADTLEELWISYN-QIASLSG-----IEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             SSHHHHHHHCCEEECSEE-ECCCHHH-----HHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSSH
T ss_pred             cccccccccccccccccc-ccccccc-----ccccccccccccccch-hccccccccccCCCccceeecCCCc
Confidence            111223456788888764 3443321     4456888888888774 3332112347778889999988854

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=2.3e-05  Score=58.69  Aligned_cols=86  Identities=14%  Similarity=0.139  Sum_probs=56.0

Q ss_pred             hccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccc
Q 037794          121 MIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEE  200 (293)
Q Consensus       121 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~  200 (293)
                      +..+++|++|++.+.+.++.++.++   +..+++|+.|+++++. ++.+ +..++.++++|++|++++ ++++.++.  +
T Consensus        27 l~~l~~l~~L~l~~n~~l~~i~~~~---f~~l~~L~~L~Ls~N~-l~~i-~~~~f~~l~~L~~L~Ls~-N~l~~l~~--~   98 (156)
T d2ifga3          27 LPGAENLTELYIENQQHLQHLELRD---LRGLGELRNLTIVKSG-LRFV-APDAFHFTPRLSRLNLSF-NALESLSW--K   98 (156)
T ss_dssp             SCSCSCCSEEECCSCSSCCEECGGG---SCSCCCCSEEECCSSC-CCEE-CTTGGGSCSCCCEEECCS-SCCSCCCS--T
T ss_pred             ccCccccCeeecCCCccccccCchh---hccccccCcceeeccc-cCCc-ccccccccccccceeccC-CCCcccCh--h
Confidence            3456677777777666677776555   5567888888887774 5554 555677888888888887 55666542  1


Q ss_pred             cccccccCCCCCCcccEEecCC
Q 037794          201 LNADKEHIGPLFPRLFILRLID  222 (293)
Q Consensus       201 ~~~~~~~~~~~f~~L~~L~l~~  222 (293)
                      ...       . .+|++|++.+
T Consensus        99 ~~~-------~-~~l~~L~L~~  112 (156)
T d2ifga3          99 TVQ-------G-LSLQELVLSG  112 (156)
T ss_dssp             TTC-------S-CCCCEEECCS
T ss_pred             hhc-------c-ccccccccCC
Confidence            111       1 4577777765

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.62  E-value=9.4e-06  Score=68.86  Aligned_cols=90  Identities=16%  Similarity=0.083  Sum_probs=49.6

Q ss_pred             CCCcceEeccccccceEeccccccccccccccccccceeecccccccc--cc-c-----cccccccCCCcceEeEcCCCC
Q 037794            4 PNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLT--SF-C-----LENYTLEFPSLERVFVTRCPN   75 (293)
Q Consensus         4 l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~--~~-~-----~~~~~~~~~~L~~L~i~~c~~   75 (293)
                      ...|++|+++++. +..-..   ..........++|+.+.+.++..-.  .. +     .......+++|++|++++|..
T Consensus        30 ~~~l~~L~Ls~n~-i~~~~~---~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i  105 (344)
T d2ca6a1          30 DDSVKEIVLSGNT-IGTEAA---RWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF  105 (344)
T ss_dssp             CSCCCEEECTTSE-ECHHHH---HHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred             CCCCCEEECcCCc-CCHHHH---HHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccc
Confidence            4668888888752 211110   0001122336788888887653211  00 0     011133578899999988742


Q ss_pred             cc----ccccCccCCCCeeEEEeccc
Q 037794           76 MK----TFSQGIVSTPKLHEVQVSKK   97 (293)
Q Consensus        76 l~----~lp~~~~~~~~L~~L~l~~c   97 (293)
                      -.    .+...+..+++|+.|.+.+|
T Consensus       106 ~~~~~~~l~~~l~~~~~L~~L~l~~n  131 (344)
T d2ca6a1         106 GPTAQEPLIDFLSKHTPLEHLYLHNN  131 (344)
T ss_dssp             CTTTHHHHHHHHHHCTTCCEEECCSS
T ss_pred             ccccccchhhhhcccccchheecccc
Confidence            11    23334456788999999877

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.86  E-value=0.00011  Score=61.94  Aligned_cols=232  Identities=14%  Similarity=0.125  Sum_probs=132.1

Q ss_pred             CCCCCcceEeccccccceEecccc---ccccccccccccccceeeccccccccccc---cccccccCCCcceEeEcCCCC
Q 037794            2 GIPNSLVNLNVSYCEKIEEIIGHV---GEEAKENRIAFNELKFLELDDLPRLTSFC---LENYTLEFPSLERVFVTRCPN   75 (293)
Q Consensus         2 g~l~~L~~L~l~~c~~l~~i~~~~---~~~~~~~~~~~~~L~~L~l~~~~~l~~~~---~~~~~~~~~~L~~L~i~~c~~   75 (293)
                      ...++|+.|+++++.. .......   ..........+++|+.|+++++. +....   ........++|++|++++|. 
T Consensus        56 ~~~~~L~~l~l~~~~~-~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~n~-  132 (344)
T d2ca6a1          56 ASKKDLEIAEFSDIFT-GRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA-FGPTAQEPLIDFLSKHTPLEHLYLHNNG-  132 (344)
T ss_dssp             TTCTTCCEEECCSCCT-TSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC-CCTTTHHHHHHHHHHCTTCCEEECCSSC-
T ss_pred             HhCCCCCEEECCCCcc-cccccccchHHHHHHHHHhhCCCcccccccccc-cccccccchhhhhcccccchheeccccc-
Confidence            4578999999987632 1111110   00011233347899999999874 22221   11123467899999999985 


Q ss_pred             ccc-----c---------ccCccCCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCCCCceEe
Q 037794           76 MKT-----F---------SQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRLKEI  141 (293)
Q Consensus        76 l~~-----l---------p~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~  141 (293)
                      ++.     +         .......+.|+.+.+.++. .     .    ......+...+..++.|+.|.++++. +...
T Consensus       133 l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~-i-----~----~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~  201 (344)
T d2ca6a1         133 LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-L-----E----NGSMKEWAKTFQSHRLLHTVKMVQNG-IRPE  201 (344)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC-C-----T----GGGHHHHHHHHHHCTTCCEEECCSSC-CCHH
T ss_pred             ccccccccccccccccccccccccCcccceeeccccc-c-----c----ccccccccchhhhhhhhccccccccc-cccc
Confidence            321     1         0011356789999887540 0     0    01223444555678899999999864 4332


Q ss_pred             ccCCC--CCcccCCCccEEEeccCCCCCccC--ChhHHhccCCCCeEEecCccccccccc--c-cccccccccCCCCCCc
Q 037794          142 WHGQA--LPVSFFNNLFKLVVDDCANMSSAI--PANLLRCLSNLRWLEVRNCDSLEEVLH--L-EELNADKEHIGPLFPR  214 (293)
Q Consensus       142 ~~~~~--~~~~~l~~L~~L~i~~c~~l~~~~--p~~~~~~l~~L~~L~i~~c~~l~~i~~--~-~~~~~~~~~~~~~f~~  214 (293)
                      +....  ......++|+.|+++++..-....  ....+..+++|++|++++|. +.....  . +.+..      ..+++
T Consensus       202 g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~-i~~~g~~~l~~~l~~------~~~~~  274 (344)
T d2ca6a1         202 GIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL-LSARGAAAVVDAFSK------LENIG  274 (344)
T ss_dssp             HHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHT------CSSCC
T ss_pred             ccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCc-cCchhhHHHHHHhhh------ccCCC
Confidence            11000  114467899999999886322110  12346678999999999975 333210  0 11111      12378


Q ss_pred             ccEEecCCCCCCceecc--CCCccc-cCCCcceEeeecCCCcccc
Q 037794          215 LFILRLIDLPKLKRFCN--FTGNII-EMPMLWSLTIENCPDMETF  256 (293)
Q Consensus       215 L~~L~l~~~~~l~~~~~--~~~~~~-~l~~L~~L~i~~C~~L~~l  256 (293)
                      |++|+++++ ++..-..  ....+. .+++|++|+++++ ++..-
T Consensus       275 L~~L~ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~l~~N-~~~~~  317 (344)
T d2ca6a1         275 LQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGN-RFSEE  317 (344)
T ss_dssp             CCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTS-BSCTT
T ss_pred             CCEEECCCC-cCChHHHHHHHHHHHccCCCCCEEECCCC-cCCCc
Confidence            999999986 4643210  002232 5789999999986 45443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.81  E-value=0.0014  Score=56.36  Aligned_cols=113  Identities=13%  Similarity=0.103  Sum_probs=70.8

Q ss_pred             CCcceEeccccccceEeccccccccccccccccccceeecccccccccccc---ccccccCCCcceEeEcCCCCcc----
Q 037794            5 NSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCL---ENYTLEFPSLERVFVTRCPNMK----   77 (293)
Q Consensus         5 ~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~---~~~~~~~~~L~~L~i~~c~~l~----   77 (293)
                      .+|++|+|++ .++.+......      ...++++++|.+.+|. +.....   ......+++|++|+++++. ++    
T Consensus         2 ~~l~~ld~~~-~~i~~~~~~~l------~~~l~~l~~L~L~~~~-i~~~~~~~l~~~L~~~~~L~~LdLs~N~-i~~~~~   72 (460)
T d1z7xw1           2 LDIQSLDIQC-EELSDARWAEL------LPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNE-LGDVGV   72 (460)
T ss_dssp             EEEEEEEEES-CCCCHHHHHHH------HHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHH
T ss_pred             CCCCEEEeeC-CcCChHHHHHH------HHhCCCCCEEEeCCCC-CCHHHHHHHHHHHhcCCCCCEEECcCCc-CChHHH
Confidence            3688999955 56655332211      1138899999999984 432221   1223578999999999864 54    


Q ss_pred             -ccccCcc-CCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCCC
Q 037794           78 -TFSQGIV-STPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFP  136 (293)
Q Consensus        78 -~lp~~~~-~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~  136 (293)
                       .+...+. ..++|++|++++|. ..         ......+...+..+++|++|+++++.
T Consensus        73 ~~l~~~l~~~~~~L~~L~L~~n~-it---------~~~~~~l~~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1          73 HCVLQGLQTPSCKIQKLSLQNCC-LT---------GAGCGVLSSTLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             HHHHHTTCSTTCCCCEEECTTSC-CB---------GGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred             HHHHHHHhcCCCCCCEEECCCCC-cc---------ccccccccchhhcccccccccccccc
Confidence             1222222 34689999999871 00         01223455566788999999998864

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.61  E-value=0.0026  Score=54.56  Aligned_cols=114  Identities=16%  Similarity=0.195  Sum_probs=68.9

Q ss_pred             cccceeeccccccccccccccccccCCCcceEeEcCCCCcc-----ccccCccCCCCeeEEEeccccccccccccCccch
Q 037794           37 NELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMK-----TFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLN  111 (293)
Q Consensus        37 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~-----~lp~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~  111 (293)
                      ++|+.|++++ .++.+.........+++++.|++.+|. ++     .+...+.++++|+.|+++++. ..         .
T Consensus         2 ~~l~~ld~~~-~~i~~~~~~~l~~~l~~l~~L~L~~~~-i~~~~~~~l~~~L~~~~~L~~LdLs~N~-i~---------~   69 (460)
T d1z7xw1           2 LDIQSLDIQC-EELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNE-LG---------D   69 (460)
T ss_dssp             EEEEEEEEES-CCCCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCC-CH---------H
T ss_pred             CCCCEEEeeC-CcCChHHHHHHHHhCCCCCEEEeCCCC-CCHHHHHHHHHHHhcCCCCCEEECcCCc-CC---------h
Confidence            4688899844 455544333334568899999999984 44     234455678899999998750 00         0


Q ss_pred             hhhhhhhhhhc-cCCCccEEEecCCCCceEeccCCCCC--cccCCCccEEEeccCC
Q 037794          112 STIQKRYEEMI-GFRDIERLQLSHFPRLKEIWHGQALP--VSFFNNLFKLVVDDCA  164 (293)
Q Consensus       112 ~~~~~l~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~--~~~l~~L~~L~i~~c~  164 (293)
                      .....+...+. ...+|++|++++|. +++..... ++  +...++|++|+++++.
T Consensus        70 ~~~~~l~~~l~~~~~~L~~L~L~~n~-it~~~~~~-l~~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1          70 VGVHCVLQGLQTPSCKIQKLSLQNCC-LTGAGCGV-LSSTLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             HHHHHHHHTTCSTTCCCCEEECTTSC-CBGGGHHH-HHHHTTSCTTCCEEECCSSB
T ss_pred             HHHHHHHHHHhcCCCCCCEEECCCCC-cccccccc-ccchhhcccccccccccccc
Confidence            11122222222 34579999998875 55432111 11  3356889999998875

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.07  E-value=0.0046  Score=45.83  Aligned_cols=63  Identities=19%  Similarity=-0.028  Sum_probs=30.0

Q ss_pred             ccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecC
Q 037794          122 IGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRN  188 (293)
Q Consensus       122 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~  188 (293)
                      ..+++|+.|+++++ .++.+..-. .....+++|+.|+++++. ++++ +.-...+...|++|++.+
T Consensus        62 ~~~~~L~~L~Ls~N-~i~~l~~~~-~~~~~l~~L~~L~Ls~N~-i~~l-~~l~~l~~~~L~~L~L~~  124 (162)
T d1koha1          62 ENIPELLSLNLSNN-RLYRLDDMS-SIVQKAPNLKILNLSGNE-LKSE-RELDKIKGLKLEELWLDG  124 (162)
T ss_dssp             HHCTTCCCCCCCSS-CCCCCSGGG-THHHHSTTCCCCCCTTSC-CCCG-GGHHHHTTCCCSSCCCTT
T ss_pred             HhCCCCCEeeCCCc-cccCCchhH-HHHhhCCcccccccccCc-cccc-hhhhhhhccccceeecCC
Confidence            45677777777774 344332100 002345666666665543 2222 221222334555666555

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.07  E-value=0.017  Score=42.80  Aligned_cols=14  Identities=7%  Similarity=-0.054  Sum_probs=7.2

Q ss_pred             ccCCCccEEEecCC
Q 037794          122 IGFRDIERLQLSHF  135 (293)
Q Consensus       122 ~~~~~L~~L~l~~~  135 (293)
                      ...+.|+.|+++++
T Consensus        69 ~~n~~L~~L~L~~n   82 (167)
T d1pgva_          69 ETSPSLRVLNVESN   82 (167)
T ss_dssp             HHCSSCCEEECCSS
T ss_pred             hhcccccceeeehh
Confidence            34455555555554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=93.44  E-value=0.032  Score=41.02  Aligned_cols=14  Identities=14%  Similarity=-0.080  Sum_probs=7.6

Q ss_pred             HhccCCCCeEEecC
Q 037794          175 LRCLSNLRWLEVRN  188 (293)
Q Consensus       175 ~~~l~~L~~L~i~~  188 (293)
                      +...+.|++|++..
T Consensus       128 L~~n~~L~~L~l~~  141 (166)
T d1io0a_         128 LEKNTTLLKFGYHF  141 (166)
T ss_dssp             HHHCSSCCEEECCC
T ss_pred             HHhCCCcCEEeCcC
Confidence            34455666665543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=92.94  E-value=0.032  Score=41.03  Aligned_cols=117  Identities=10%  Similarity=0.039  Sum_probs=59.3

Q ss_pred             ccccceeecccccccccccc---ccccccCCCcceEeEcCCCCcc-----ccccCccCCCCeeEEEeccccccccccccC
Q 037794           36 FNELKFLELDDLPRLTSFCL---ENYTLEFPSLERVFVTRCPNMK-----TFSQGIVSTPKLHEVQVSKKEEDELHHWEG  107 (293)
Q Consensus        36 ~~~L~~L~l~~~~~l~~~~~---~~~~~~~~~L~~L~i~~c~~l~-----~lp~~~~~~~~L~~L~l~~c~~~~~~~~~~  107 (293)
                      .|+|++|.+.++..+..-..   .......++|++|++++| .++     .+-..+...++++.+.+.+|.-.       
T Consensus        16 ~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n-~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~-------   87 (166)
T d1io0a_          16 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNFIS-------   87 (166)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSCCC-------
T ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCC-cccHHHHHHHHHHHhhcccchhhhhcccccc-------
Confidence            46777777766544432211   111235667777777776 333     12223345677777777765110       


Q ss_pred             ccchhhhhhhhhhhccCCCccEEEecCC-CCceEeccCCC-CCcccCCCccEEEeccC
Q 037794          108 NKLNSTIQKRYEEMIGFRDIERLQLSHF-PRLKEIWHGQA-LPVSFFNNLFKLVVDDC  163 (293)
Q Consensus       108 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~l~~~~~~~~-~~~~~l~~L~~L~i~~c  163 (293)
                         ......+...+...++|+.+++..+ ..+++...... -.+...++|++|++...
T Consensus        88 ---~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          88 ---GSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             ---HHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             ---chhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence               0223344555566777777777543 23433211110 00223467788877543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.89  E-value=0.011  Score=43.68  Aligned_cols=62  Identities=16%  Similarity=0.141  Sum_probs=33.6

Q ss_pred             cCCCccEEEeccCCCCCccCC-hhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCC
Q 037794          151 FFNNLFKLVVDDCANMSSAIP-ANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDL  223 (293)
Q Consensus       151 ~l~~L~~L~i~~c~~l~~~~p-~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~  223 (293)
                      .+++|++|+++++.- +++-+ ...++.+++|+.|++++ +.++++.......        . .+|++|++.+-
T Consensus        63 ~~~~L~~L~Ls~N~i-~~l~~~~~~~~~l~~L~~L~Ls~-N~i~~l~~l~~l~--------~-~~L~~L~L~~N  125 (162)
T d1koha1          63 NIPELLSLNLSNNRL-YRLDDMSSIVQKAPNLKILNLSG-NELKSERELDKIK--------G-LKLEELWLDGN  125 (162)
T ss_dssp             HCTTCCCCCCCSSCC-CCCSGGGTHHHHSTTCCCCCCTT-SCCCCGGGHHHHT--------T-CCCSSCCCTTS
T ss_pred             hCCCCCEeeCCCccc-cCCchhHHHHhhCCccccccccc-Cccccchhhhhhh--------c-cccceeecCCC
Confidence            356777777776653 22211 23356677777777777 5555543211111        2 45666776664

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=90.73  E-value=0.082  Score=38.82  Aligned_cols=89  Identities=10%  Similarity=0.149  Sum_probs=48.3

Q ss_pred             ccccceeecccccccccccc---ccccccCCCcceEeEcCCCCcc-----ccccCccCCCCeeEEEeccccccccccccC
Q 037794           36 FNELKFLELDDLPRLTSFCL---ENYTLEFPSLERVFVTRCPNMK-----TFSQGIVSTPKLHEVQVSKKEEDELHHWEG  107 (293)
Q Consensus        36 ~~~L~~L~l~~~~~l~~~~~---~~~~~~~~~L~~L~i~~c~~l~-----~lp~~~~~~~~L~~L~l~~c~~~~~~~~~~  107 (293)
                      .+.|++|+++++..+..-..   .......++|++|++++|. ++     .+...+...+.|+.|.+++|.-.       
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~-l~~~~~~~la~~L~~n~~L~~L~L~~n~i~-------   85 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVESNFLT-------   85 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCSSBCC-------
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccc-cchhHHHHHhhhhhhcccccceeeehhhcc-------
Confidence            46677777766543332211   1112345678888888763 33     12223345677888888876100       


Q ss_pred             ccchhhhhhhhhhhccCCCccEEEecCC
Q 037794          108 NKLNSTIQKRYEEMIGFRDIERLQLSHF  135 (293)
Q Consensus       108 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~  135 (293)
                         ......+...+...+.|++|+++++
T Consensus        86 ---~~g~~~l~~aL~~n~sL~~L~l~~n  110 (167)
T d1pgva_          86 ---PELLARLLRSTLVTQSIVEFKADNQ  110 (167)
T ss_dssp             ---HHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             ---hHHHHHHHHHHHhCCcCCEEECCCC
Confidence               0122344455566667777777653